Query 013644
Match_columns 439
No_of_seqs 801 out of 2324
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 05:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.9E-59 6.2E-64 372.7 28.0 331 5-387 106-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-53 2.3E-58 340.9 27.7 295 3-345 146-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.4E-52 9.5E-57 335.7 22.5 291 6-346 167-459 (459)
4 KOG0286 G-protein beta subunit 100.0 1.8E-48 3.9E-53 300.3 32.1 295 3-345 44-343 (343)
5 KOG0315 G-protein beta subunit 100.0 4.2E-46 9E-51 280.8 28.9 290 27-361 11-303 (311)
6 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-47 1.3E-51 306.0 21.9 282 55-387 173-458 (459)
7 KOG0279 G protein beta subunit 100.0 1.4E-43 3E-48 271.6 31.8 294 3-347 4-313 (315)
8 KOG0265 U5 snRNP-specific prot 100.0 4.2E-44 9E-49 277.3 27.2 295 6-345 39-336 (338)
9 KOG0319 WD40-repeat-containing 100.0 2.8E-44 6.1E-49 310.2 27.6 385 2-423 92-600 (775)
10 KOG0282 mRNA splicing factor [ 100.0 5.5E-45 1.2E-49 299.8 19.3 296 5-345 205-503 (503)
11 KOG0319 WD40-repeat-containing 100.0 2.3E-43 5E-48 304.5 28.1 353 4-392 137-622 (775)
12 KOG0318 WD40 repeat stress pro 100.0 3.6E-41 7.7E-46 280.2 36.3 352 4-389 180-602 (603)
13 KOG0295 WD40 repeat-containing 100.0 7E-43 1.5E-47 277.4 24.8 295 1-346 95-405 (406)
14 KOG0318 WD40 repeat stress pro 100.0 4.9E-41 1.1E-45 279.3 35.9 377 2-394 47-565 (603)
15 KOG0293 WD40 repeat-containing 100.0 1.3E-42 2.7E-47 280.4 24.9 296 5-348 215-514 (519)
16 KOG0273 Beta-transducin family 100.0 7.1E-42 1.5E-46 280.5 28.9 327 8-389 173-523 (524)
17 KOG0645 WD40 repeat protein [G 100.0 2.3E-40 5E-45 252.9 31.8 298 1-347 1-311 (312)
18 KOG0315 G-protein beta subunit 100.0 1.2E-40 2.7E-45 251.3 29.0 278 4-326 30-309 (311)
19 KOG0296 Angio-associated migra 100.0 1.1E-40 2.4E-45 265.1 28.5 340 6-389 56-398 (399)
20 KOG0316 Conserved WD40 repeat- 100.0 1.2E-40 2.6E-45 249.4 26.8 286 6-346 9-298 (307)
21 KOG0284 Polyadenylation factor 100.0 3.3E-42 7.1E-47 277.5 19.3 280 14-346 96-379 (464)
22 KOG0279 G protein beta subunit 100.0 5.4E-40 1.2E-44 252.0 30.3 292 48-389 6-313 (315)
23 KOG0285 Pleiotropic regulator 100.0 3.6E-41 7.8E-46 267.2 24.5 292 4-348 141-440 (460)
24 KOG0286 G-protein beta subunit 100.0 4.1E-40 9E-45 254.3 27.8 290 51-387 49-343 (343)
25 KOG0291 WD40-repeat-containing 100.0 1.4E-39 3.1E-44 281.9 34.1 353 3-394 134-555 (893)
26 KOG0263 Transcription initiati 100.0 1E-40 2.3E-45 290.9 24.2 250 8-349 372-651 (707)
27 KOG0306 WD40-repeat-containing 100.0 4.7E-39 1E-43 278.5 32.8 348 5-394 98-627 (888)
28 KOG0273 Beta-transducin family 100.0 4.2E-39 9.2E-44 264.3 30.8 278 15-347 236-523 (524)
29 KOG0266 WD40 repeat-containing 100.0 3.9E-39 8.4E-44 288.7 33.3 297 6-347 150-454 (456)
30 cd00200 WD40 WD40 domain, foun 100.0 1.5E-38 3.3E-43 273.7 34.7 287 7-345 2-289 (289)
31 KOG1334 WD40 repeat protein [G 100.0 1E-40 2.2E-45 275.0 17.1 370 2-382 130-502 (559)
32 PLN00181 protein SPA1-RELATED; 100.0 1.3E-37 2.7E-42 300.0 39.4 293 10-346 479-792 (793)
33 KOG0291 WD40-repeat-containing 100.0 1.8E-37 3.9E-42 268.9 34.7 333 11-395 262-618 (893)
34 KOG1446 Histone H3 (Lys4) meth 100.0 7E-37 1.5E-41 239.5 33.6 303 1-351 1-307 (311)
35 KOG0295 WD40 repeat-containing 100.0 5.7E-39 1.2E-43 255.2 22.1 286 51-388 102-405 (406)
36 KOG0265 U5 snRNP-specific prot 100.0 3.5E-38 7.7E-43 244.5 25.6 283 52-385 42-334 (338)
37 KOG0282 mRNA splicing factor [ 100.0 8.3E-40 1.8E-44 269.4 16.8 290 50-387 207-503 (503)
38 KOG0281 Beta-TrCP (transducin 100.0 2.4E-39 5.2E-44 256.2 18.3 275 56-393 196-481 (499)
39 KOG0296 Angio-associated migra 100.0 4.1E-37 8.9E-42 244.8 28.2 299 4-347 96-398 (399)
40 KOG0278 Serine/threonine kinas 100.0 9.7E-39 2.1E-43 241.3 17.2 293 5-351 5-301 (334)
41 KOG0276 Vesicle coat complex C 100.0 2.1E-37 4.6E-42 263.0 27.3 290 3-343 2-295 (794)
42 KOG0285 Pleiotropic regulator 100.0 1.3E-37 2.8E-42 247.1 24.3 286 50-388 144-438 (460)
43 KOG0292 Vesicle coat complex C 100.0 6.1E-37 1.3E-41 270.2 30.7 336 9-395 4-354 (1202)
44 KOG0281 Beta-TrCP (transducin 100.0 1.2E-38 2.6E-43 252.2 17.0 276 13-351 196-481 (499)
45 KOG0643 Translation initiation 100.0 3.2E-37 7E-42 235.3 22.9 288 9-348 5-318 (327)
46 KOG0284 Polyadenylation factor 100.0 3E-38 6.5E-43 254.7 17.8 281 56-388 95-379 (464)
47 KOG0275 Conserved WD40 repeat- 100.0 2E-37 4.4E-42 243.3 18.8 287 12-346 211-508 (508)
48 KOG0263 Transcription initiati 100.0 2E-36 4.3E-41 264.3 24.7 208 6-246 443-651 (707)
49 KOG0306 WD40-repeat-containing 100.0 6.6E-36 1.4E-40 259.1 27.4 293 8-348 367-665 (888)
50 KOG0645 WD40 repeat protein [G 100.0 1.6E-34 3.4E-39 221.1 31.5 291 50-389 7-311 (312)
51 KOG0640 mRNA cleavage stimulat 100.0 4.1E-36 8.9E-41 234.3 22.7 296 8-346 106-425 (430)
52 KOG0293 WD40 repeat-containing 100.0 2.2E-36 4.9E-41 244.4 21.1 293 50-391 217-515 (519)
53 KOG0266 WD40 repeat-containing 100.0 3.2E-35 7E-40 263.5 30.9 288 55-388 157-453 (456)
54 KOG1407 WD40 repeat protein [F 100.0 8.3E-35 1.8E-39 221.5 27.8 286 8-346 14-310 (313)
55 KOG0283 WD40 repeat-containing 100.0 8.4E-36 1.8E-40 262.5 23.5 261 3-306 255-577 (712)
56 KOG0772 Uncharacterized conser 100.0 2.8E-35 6E-40 244.7 25.1 302 7-344 160-484 (641)
57 cd00200 WD40 WD40 domain, foun 100.0 2.3E-34 5E-39 247.6 31.4 283 53-387 5-289 (289)
58 KOG0276 Vesicle coat complex C 100.0 4.2E-35 9E-40 249.2 25.9 292 53-395 9-304 (794)
59 KOG0313 Microtubule binding pr 100.0 5.5E-35 1.2E-39 233.9 23.6 294 13-347 104-418 (423)
60 PLN00181 protein SPA1-RELATED; 100.0 5.5E-34 1.2E-38 274.8 34.2 304 35-388 457-792 (793)
61 KOG0288 WD40 repeat protein Ti 100.0 6.9E-36 1.5E-40 241.5 15.6 286 7-345 168-459 (459)
62 KOG0316 Conserved WD40 repeat- 100.0 3.6E-34 7.8E-39 214.8 23.5 258 50-360 10-271 (307)
63 KOG0268 Sof1-like rRNA process 100.0 3.6E-35 7.9E-40 233.6 16.4 285 7-348 59-346 (433)
64 KOG0277 Peroxisomal targeting 100.0 6.6E-34 1.4E-38 215.7 22.3 283 18-346 12-308 (311)
65 KOG0292 Vesicle coat complex C 100.0 3.9E-34 8.5E-39 252.6 23.0 304 53-393 5-325 (1202)
66 KOG0310 Conserved WD40 repeat- 100.0 3.5E-33 7.7E-38 230.8 26.0 285 14-349 26-311 (487)
67 KOG1407 WD40 repeat protein [F 100.0 3.7E-33 8.1E-38 212.5 23.9 249 53-351 16-265 (313)
68 KOG0647 mRNA export protein (c 100.0 1.1E-32 2.4E-37 214.3 26.9 275 13-335 26-311 (347)
69 KOG0275 Conserved WD40 repeat- 100.0 2.7E-34 5.8E-39 225.8 16.6 287 54-387 210-507 (508)
70 KOG0277 Peroxisomal targeting 100.0 3.3E-33 7.1E-38 212.0 21.4 253 6-304 53-308 (311)
71 KOG0289 mRNA splicing factor [ 100.0 7.9E-32 1.7E-36 219.5 28.2 283 15-346 220-505 (506)
72 KOG0274 Cdc4 and related F-box 100.0 4.6E-32 9.9E-37 241.9 29.4 278 13-351 207-486 (537)
73 KOG1036 Mitotic spindle checkp 100.0 1.9E-31 4.2E-36 208.2 28.2 274 14-337 13-294 (323)
74 KOG0973 Histone transcription 100.0 2.6E-32 5.7E-37 246.9 26.9 296 13-351 12-359 (942)
75 KOG0301 Phospholipase A2-activ 100.0 6.5E-31 1.4E-35 226.4 33.3 287 1-348 1-289 (745)
76 KOG1063 RNA polymerase II elon 100.0 8.3E-32 1.8E-36 231.8 26.5 362 3-391 180-650 (764)
77 KOG0300 WD40 repeat-containing 100.0 3.7E-32 7.9E-37 213.2 22.2 298 3-349 137-478 (481)
78 KOG1310 WD40 repeat protein [G 100.0 3.6E-32 7.8E-37 228.2 22.8 247 1-249 37-308 (758)
79 KOG0283 WD40 repeat-containing 100.0 3.2E-32 6.9E-37 240.1 23.4 253 55-349 265-578 (712)
80 KOG0641 WD40 repeat protein [G 100.0 8.1E-30 1.8E-34 190.6 32.6 301 3-347 22-349 (350)
81 KOG0294 WD40 repeat-containing 100.0 3.8E-31 8.2E-36 207.0 26.6 250 4-307 33-283 (362)
82 PTZ00421 coronin; Provisional 100.0 6.5E-31 1.4E-35 234.4 31.7 271 13-328 19-314 (493)
83 KOG0278 Serine/threonine kinas 100.0 4.1E-33 9E-38 211.0 14.8 250 6-310 51-302 (334)
84 KOG0640 mRNA cleavage stimulat 100.0 5.1E-32 1.1E-36 211.5 20.6 295 51-388 106-425 (430)
85 KOG0313 Microtubule binding pr 100.0 1.8E-31 4E-36 213.8 23.5 297 55-388 103-417 (423)
86 KOG0305 Anaphase promoting com 100.0 1E-30 2.2E-35 224.6 28.3 274 20-349 183-463 (484)
87 KOG0264 Nucleosome remodeling 100.0 3.9E-31 8.4E-36 217.0 22.9 252 12-348 122-405 (422)
88 KOG0294 WD40 repeat-containing 100.0 2.2E-30 4.8E-35 202.8 25.8 241 53-349 39-283 (362)
89 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-29 4.1E-34 198.0 30.7 287 53-391 10-305 (311)
90 KOG0308 Conserved WD40 repeat- 100.0 3.4E-31 7.4E-36 226.5 22.5 342 13-394 20-398 (735)
91 KOG1539 WD repeat protein [Gen 100.0 5.9E-30 1.3E-34 225.0 29.7 357 2-390 190-649 (910)
92 KOG0299 U3 snoRNP-associated p 100.0 3E-30 6.4E-35 212.0 25.8 297 7-344 135-453 (479)
93 PTZ00420 coronin; Provisional 100.0 1.5E-29 3.3E-34 226.6 32.7 250 32-329 50-318 (568)
94 KOG0305 Anaphase promoting com 100.0 3.1E-30 6.8E-35 221.6 27.2 243 13-307 216-463 (484)
95 KOG2096 WD40 repeat protein [G 100.0 4.8E-30 1E-34 201.3 25.1 305 7-346 79-401 (420)
96 KOG0643 Translation initiation 100.0 1.6E-29 3.5E-34 193.4 26.8 293 53-391 6-319 (327)
97 KOG0310 Conserved WD40 repeat- 100.0 2.2E-30 4.8E-35 214.3 23.1 247 7-305 61-309 (487)
98 KOG4283 Transcription-coupled 100.0 9.2E-30 2E-34 197.6 24.7 307 11-347 40-365 (397)
99 KOG0772 Uncharacterized conser 100.0 1E-30 2.2E-35 217.8 20.3 312 53-391 163-489 (641)
100 PTZ00421 coronin; Provisional 100.0 8.6E-29 1.9E-33 220.9 32.4 208 9-246 70-292 (493)
101 KOG0274 Cdc4 and related F-box 100.0 7.4E-30 1.6E-34 227.9 25.5 278 56-395 207-488 (537)
102 KOG1408 WD40 repeat protein [F 100.0 3.7E-29 8.1E-34 216.6 28.2 331 17-391 327-715 (1080)
103 KOG0641 WD40 repeat protein [G 100.0 6.4E-28 1.4E-32 180.4 29.5 292 55-389 30-349 (350)
104 KOG0289 mRNA splicing factor [ 100.0 2.9E-29 6.3E-34 204.7 24.1 254 4-304 251-505 (506)
105 KOG1539 WD repeat protein [Gen 100.0 1.2E-27 2.7E-32 210.5 35.7 356 7-395 107-612 (910)
106 KOG0639 Transducin-like enhanc 100.0 1.1E-29 2.3E-34 211.1 20.0 287 6-346 412-703 (705)
107 KOG2055 WD40 repeat protein [G 100.0 8.1E-29 1.8E-33 203.7 24.9 291 14-347 213-512 (514)
108 KOG0308 Conserved WD40 repeat- 100.0 7.3E-30 1.6E-34 218.4 19.5 290 62-390 29-328 (735)
109 KOG1332 Vesicle coat complex C 100.0 1.7E-29 3.6E-34 190.8 18.6 256 10-305 7-286 (299)
110 KOG1274 WD40 repeat protein [G 100.0 3.8E-28 8.2E-33 216.0 30.2 286 11-344 10-297 (933)
111 KOG0268 Sof1-like rRNA process 100.0 3.3E-30 7.1E-35 205.5 15.2 284 53-395 62-351 (433)
112 KOG0321 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 210.3 26.0 309 19-349 54-393 (720)
113 KOG1063 RNA polymerase II elon 100.0 1.3E-28 2.9E-33 212.2 26.0 352 9-390 262-700 (764)
114 KOG0973 Histone transcription 100.0 7.3E-29 1.6E-33 224.8 25.5 304 54-395 10-361 (942)
115 KOG0647 mRNA export protein (c 100.0 3.2E-28 6.9E-33 189.6 25.2 275 54-388 24-312 (347)
116 KOG0288 WD40 repeat protein Ti 100.0 2.1E-30 4.5E-35 210.0 13.2 280 53-386 171-458 (459)
117 KOG0301 Phospholipase A2-activ 100.0 1.2E-28 2.5E-33 212.6 23.8 283 49-391 6-290 (745)
118 KOG1273 WD40 repeat protein [G 100.0 2.3E-28 5.1E-33 191.5 23.1 295 17-348 26-323 (405)
119 PTZ00420 coronin; Provisional 100.0 1.6E-27 3.5E-32 213.7 31.1 236 77-351 50-297 (568)
120 KOG0300 WD40 repeat-containing 100.0 3.3E-28 7.1E-33 191.1 22.3 302 49-391 140-478 (481)
121 KOG2106 Uncharacterized conser 100.0 6.8E-27 1.5E-31 194.6 30.9 348 6-386 96-518 (626)
122 KOG2106 Uncharacterized conser 100.0 3.3E-27 7.1E-32 196.5 28.5 325 8-388 239-625 (626)
123 KOG0269 WD40 repeat-containing 100.0 5.9E-29 1.3E-33 217.0 18.3 292 15-393 40-344 (839)
124 KOG1408 WD40 repeat protein [F 100.0 7E-28 1.5E-32 208.7 23.9 303 4-348 359-714 (1080)
125 KOG0650 WD40 repeat nucleolar 100.0 1.1E-27 2.3E-32 203.4 24.1 291 6-345 392-733 (733)
126 KOG1332 Vesicle coat complex C 100.0 3.3E-28 7E-33 183.9 18.5 257 51-348 5-287 (299)
127 KOG4328 WD40 protein [Function 100.0 2.4E-27 5.2E-32 194.9 24.4 308 3-348 175-496 (498)
128 KOG0299 U3 snoRNP-associated p 100.0 1.4E-27 2.9E-32 196.5 22.4 253 11-302 199-453 (479)
129 KOG2048 WD40 repeat protein [G 100.0 2.9E-25 6.4E-30 191.4 37.2 363 6-396 60-555 (691)
130 KOG1036 Mitotic spindle checkp 100.0 7.6E-27 1.6E-31 182.6 24.9 268 55-388 11-293 (323)
131 KOG0264 Nucleosome remodeling 100.0 2.4E-27 5.2E-32 194.9 22.4 267 99-391 120-406 (422)
132 KOG0646 WD40 repeat protein [G 100.0 2.1E-27 4.6E-32 195.7 21.2 277 31-351 12-311 (476)
133 KOG4227 WD40 repeat protein [G 100.0 5.8E-27 1.3E-31 189.3 22.8 303 7-347 49-387 (609)
134 KOG2048 WD40 repeat protein [G 100.0 1.8E-25 4E-30 192.6 33.1 294 11-348 22-320 (691)
135 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.5E-25 3.2E-30 194.1 32.6 272 26-351 1-283 (300)
136 KOG0646 WD40 repeat protein [G 100.0 5E-27 1.1E-31 193.6 21.4 260 14-346 81-349 (476)
137 KOG1273 WD40 repeat protein [G 100.0 3.3E-26 7.1E-31 179.6 22.6 288 60-395 26-328 (405)
138 KOG2919 Guanine nucleotide-bin 100.0 4.2E-26 9.1E-31 179.6 23.2 285 17-338 52-361 (406)
139 KOG0269 WD40 repeat-containing 100.0 1.9E-27 4.1E-32 207.7 16.3 245 17-307 90-342 (839)
140 KOG2445 Nuclear pore complex c 100.0 4.1E-25 9E-30 172.8 26.2 270 52-347 8-318 (361)
141 KOG1445 Tumor-specific antigen 100.0 1.2E-25 2.5E-30 192.6 25.2 125 216-352 628-755 (1012)
142 KOG1034 Transcriptional repres 99.9 5.8E-26 1.3E-30 179.2 20.6 325 4-346 27-382 (385)
143 KOG0302 Ribosome Assembly prot 99.9 1.1E-25 2.3E-30 180.8 21.3 264 10-299 147-433 (440)
144 KOG2055 WD40 repeat protein [G 99.9 1.7E-25 3.8E-30 184.2 22.6 288 56-389 212-512 (514)
145 KOG0639 Transducin-like enhanc 99.9 4.5E-26 9.8E-31 189.8 19.1 283 55-388 417-703 (705)
146 KOG2445 Nuclear pore complex c 99.9 3.6E-24 7.7E-29 167.7 27.5 289 11-314 10-330 (361)
147 KOG0322 G-protein beta subunit 99.9 1.7E-25 3.6E-30 171.3 18.7 303 5-346 5-322 (323)
148 KOG0267 Microtubule severing p 99.9 4.9E-27 1.1E-31 203.6 11.1 255 26-338 4-259 (825)
149 KOG1274 WD40 repeat protein [G 99.9 3.1E-24 6.8E-29 191.4 28.6 250 55-348 11-263 (933)
150 KOG4328 WD40 protein [Function 99.9 1.1E-24 2.3E-29 179.5 23.5 297 53-389 182-495 (498)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-23 5.1E-28 180.3 32.9 275 3-327 20-300 (300)
152 KOG0650 WD40 repeat nucleolar 99.9 1.2E-24 2.7E-29 184.9 23.5 295 51-386 394-732 (733)
153 KOG0321 WD40 repeat-containing 99.9 8.9E-25 1.9E-29 187.2 22.7 311 62-391 54-393 (720)
154 KOG2096 WD40 repeat protein [G 99.9 2.9E-24 6.4E-29 169.0 23.7 220 97-347 80-308 (420)
155 KOG0270 WD40 repeat-containing 99.9 5.8E-24 1.3E-28 174.5 23.4 288 19-394 130-454 (463)
156 KOG4283 Transcription-coupled 99.9 7.1E-24 1.5E-28 165.1 22.2 260 11-304 98-364 (397)
157 KOG0307 Vesicle coat complex C 99.9 1.3E-25 2.9E-30 204.8 14.7 253 15-350 65-330 (1049)
158 KOG1188 WD40 repeat protein [G 99.9 3.5E-24 7.7E-29 170.1 20.8 289 27-346 41-345 (376)
159 KOG0270 WD40 repeat-containing 99.9 6.2E-24 1.3E-28 174.4 20.7 238 26-310 192-454 (463)
160 KOG1009 Chromatin assembly com 99.9 1.3E-23 2.9E-28 170.5 22.4 321 14-352 13-377 (434)
161 KOG0302 Ribosome Assembly prot 99.9 4.8E-23 1E-27 165.8 22.8 251 54-386 148-435 (440)
162 KOG0267 Microtubule severing p 99.9 3.6E-25 7.8E-30 192.2 10.5 238 8-297 22-260 (825)
163 KOG1538 Uncharacterized conser 99.9 5E-23 1.1E-27 177.8 23.4 275 16-348 14-294 (1081)
164 KOG0307 Vesicle coat complex C 99.9 1E-24 2.2E-29 199.1 12.7 289 19-392 11-330 (1049)
165 KOG1034 Transcriptional repres 99.9 1.8E-23 3.9E-28 165.2 16.7 270 13-305 88-383 (385)
166 KOG1445 Tumor-specific antigen 99.9 1.6E-22 3.4E-27 173.7 22.1 121 274-395 627-756 (1012)
167 KOG4378 Nuclear protein COP1 [ 99.9 9.7E-23 2.1E-27 169.8 20.0 263 16-329 36-305 (673)
168 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-23 8E-28 172.3 17.0 219 17-282 82-301 (673)
169 KOG0644 Uncharacterized conser 99.9 5.4E-24 1.2E-28 187.9 12.0 290 2-349 178-470 (1113)
170 KOG1963 WD40 repeat protein [G 99.9 3.7E-21 8E-26 171.4 29.7 354 12-394 203-588 (792)
171 KOG0642 Cell-cycle nuclear pro 99.9 3.8E-23 8.3E-28 174.9 15.2 266 4-350 284-564 (577)
172 COG2319 FOG: WD40 repeat [Gene 99.9 9.7E-20 2.1E-24 166.7 38.5 335 9-395 60-406 (466)
173 KOG1007 WD repeat protein TSSC 99.9 6.6E-21 1.4E-25 148.3 23.3 282 25-347 25-361 (370)
174 KOG1007 WD repeat protein TSSC 99.9 2.9E-21 6.3E-26 150.2 20.2 267 8-305 57-361 (370)
175 KOG4497 Uncharacterized conser 99.9 2.9E-21 6.2E-26 153.0 19.1 324 19-406 13-408 (447)
176 KOG1587 Cytoplasmic dynein int 99.9 6.9E-20 1.5E-24 162.9 29.3 287 36-349 222-518 (555)
177 PRK11028 6-phosphogluconolacto 99.9 2.9E-19 6.2E-24 155.9 32.5 284 29-347 5-304 (330)
178 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-18 2.7E-23 159.4 37.8 333 6-390 100-443 (466)
179 KOG1517 Guanine nucleotide bin 99.9 2.8E-20 6.1E-25 168.8 25.4 297 15-351 1065-1385(1387)
180 KOG0290 Conserved WD40 repeat- 99.9 4.9E-20 1.1E-24 143.6 23.3 292 7-343 38-361 (364)
181 KOG1188 WD40 repeat protein [G 99.9 4.6E-20 1E-24 146.9 23.2 279 72-389 41-346 (376)
182 KOG0290 Conserved WD40 repeat- 99.9 1.7E-20 3.7E-25 146.1 19.9 246 12-295 94-356 (364)
183 KOG1523 Actin-related protein 99.9 1.3E-19 2.7E-24 143.2 24.9 227 9-246 5-238 (361)
184 KOG1963 WD40 repeat protein [G 99.9 2.8E-19 6.1E-24 159.6 30.1 305 56-391 204-540 (792)
185 KOG0303 Actin-binding protein 99.9 5.9E-21 1.3E-25 154.8 17.6 230 53-328 77-320 (472)
186 KOG2919 Guanine nucleotide-bin 99.9 5.3E-20 1.1E-24 145.5 22.2 264 59-361 51-343 (406)
187 KOG0649 WD40 repeat protein [G 99.9 1.2E-19 2.7E-24 137.8 23.3 284 14-345 10-314 (325)
188 KOG0303 Actin-binding protein 99.9 1.5E-20 3.3E-25 152.4 19.2 209 9-246 76-296 (472)
189 KOG1538 Uncharacterized conser 99.9 1.3E-20 2.9E-25 162.9 18.5 276 59-391 14-295 (1081)
190 KOG1240 Protein kinase contain 99.9 2.4E-19 5.1E-24 165.4 25.8 355 4-387 1038-1431(1431)
191 KOG1587 Cytoplasmic dynein int 99.9 4.9E-19 1.1E-23 157.6 25.0 258 14-306 242-517 (555)
192 KOG1009 Chromatin assembly com 99.9 2.8E-19 6.2E-24 145.6 21.1 270 3-310 54-377 (434)
193 KOG4227 WD40 repeat protein [G 99.8 4.8E-19 1E-23 143.9 19.6 295 53-388 52-386 (609)
194 PRK01742 tolB translocation pr 99.8 5E-19 1.1E-23 158.9 21.5 237 35-328 183-426 (429)
195 KOG0322 G-protein beta subunit 99.8 2.7E-19 5.9E-24 137.6 16.2 302 53-388 10-322 (323)
196 KOG2110 Uncharacterized conser 99.8 1.9E-16 4.2E-21 127.9 31.5 239 14-306 5-249 (391)
197 KOG1523 Actin-related protein 99.8 2.1E-17 4.5E-22 130.9 24.9 245 56-327 9-259 (361)
198 KOG0649 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 127.3 22.2 267 58-361 11-288 (325)
199 KOG2110 Uncharacterized conser 99.8 4.1E-17 8.8E-22 131.7 26.7 237 58-349 6-250 (391)
200 KOG0642 Cell-cycle nuclear pro 99.8 3.4E-19 7.4E-24 151.2 15.6 232 3-317 333-573 (577)
201 KOG1517 Guanine nucleotide bin 99.8 8.4E-18 1.8E-22 153.1 23.7 301 58-392 1065-1384(1387)
202 KOG0644 Uncharacterized conser 99.8 1.1E-19 2.3E-24 161.2 11.3 283 53-394 186-473 (1113)
203 PRK11028 6-phosphogluconolacto 99.8 1E-16 2.3E-21 139.8 30.0 280 74-389 5-304 (330)
204 KOG0771 Prolactin regulatory e 99.8 9.3E-19 2E-23 143.6 15.3 203 18-245 148-355 (398)
205 PF02239 Cytochrom_D1: Cytochr 99.8 1.4E-16 3.1E-21 138.2 29.3 303 3-351 25-351 (369)
206 KOG3881 Uncharacterized conser 99.8 1.8E-17 3.9E-22 134.7 21.5 257 14-351 55-324 (412)
207 KOG1334 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 144.8 14.9 309 52-388 137-465 (559)
208 KOG1354 Serine/threonine prote 99.8 1.4E-17 3E-22 133.1 18.9 272 14-307 25-361 (433)
209 KOG1524 WD40 repeat-containing 99.8 5E-18 1.1E-22 143.5 17.3 207 27-301 76-282 (737)
210 KOG0771 Prolactin regulatory e 99.8 4.9E-18 1.1E-22 139.4 15.9 201 107-348 148-355 (398)
211 PF02239 Cytochrom_D1: Cytochr 99.8 2.6E-16 5.7E-21 136.6 27.4 327 27-395 6-353 (369)
212 KOG2111 Uncharacterized conser 99.8 1.9E-15 4E-20 119.9 28.9 241 59-350 7-259 (346)
213 KOG2321 WD40 repeat protein [G 99.8 5.3E-17 1.1E-21 138.5 21.6 296 3-344 41-340 (703)
214 KOG2139 WD40 repeat protein [G 99.8 3.3E-16 7.1E-21 126.3 24.4 299 15-347 99-431 (445)
215 KOG4497 Uncharacterized conser 99.8 5.2E-17 1.1E-21 129.2 18.1 293 15-355 49-399 (447)
216 KOG1524 WD40 repeat-containing 99.8 5.2E-17 1.1E-21 137.4 19.1 264 55-385 12-282 (737)
217 PRK01742 tolB translocation pr 99.8 2.1E-16 4.6E-21 142.0 21.5 226 80-361 183-418 (429)
218 KOG2394 WD40 protein DMR-N9 [G 99.7 3E-16 6.4E-21 132.9 20.3 291 70-395 134-458 (636)
219 PRK03629 tolB translocation pr 99.7 1.5E-15 3.3E-20 136.1 25.5 236 36-328 179-428 (429)
220 KOG1272 WD40-repeat-containing 99.7 4.1E-17 8.9E-22 135.5 13.3 276 15-349 130-411 (545)
221 KOG1310 WD40 repeat protein [G 99.7 4E-16 8.7E-21 132.5 18.1 237 52-310 45-308 (758)
222 KOG2111 Uncharacterized conser 99.7 5.2E-14 1.1E-18 111.8 28.6 238 16-306 7-257 (346)
223 KOG1409 Uncharacterized conser 99.7 1.4E-15 3.1E-20 121.8 19.7 255 3-306 13-271 (404)
224 KOG1240 Protein kinase contain 99.7 7.9E-15 1.7E-19 136.1 26.5 269 50-352 1041-1339(1431)
225 PRK03629 tolB translocation pr 99.7 1E-14 2.3E-19 130.7 26.2 228 81-361 179-420 (429)
226 PRK04922 tolB translocation pr 99.7 4.1E-15 9E-20 134.0 22.9 235 36-327 184-432 (433)
227 KOG2315 Predicted translation 99.7 2.6E-14 5.7E-19 122.0 24.8 281 16-351 75-394 (566)
228 PRK02889 tolB translocation pr 99.7 1.4E-14 3.1E-19 130.1 24.0 236 36-328 176-425 (427)
229 PRK05137 tolB translocation pr 99.7 3.1E-14 6.7E-19 128.6 26.3 234 36-328 182-433 (435)
230 KOG2139 WD40 repeat protein [G 99.7 5.2E-14 1.1E-18 113.8 24.2 201 14-234 140-364 (445)
231 KOG1272 WD40-repeat-containing 99.7 2.1E-16 4.7E-21 131.4 10.6 229 59-345 131-360 (545)
232 PF10282 Lactonase: Lactonase, 99.7 7.4E-13 1.6E-17 115.6 33.1 287 36-347 13-322 (345)
233 PRK05137 tolB translocation pr 99.7 4.7E-14 1E-18 127.4 26.3 221 81-354 182-419 (435)
234 PRK04922 tolB translocation pr 99.7 2.9E-14 6.2E-19 128.6 23.0 221 81-354 184-418 (433)
235 PRK02889 tolB translocation pr 99.6 8.3E-14 1.8E-18 125.1 23.9 217 81-348 176-404 (427)
236 PF08662 eIF2A: Eukaryotic tra 99.6 3.2E-14 6.9E-19 112.3 18.1 155 160-351 8-183 (194)
237 KOG2394 WD40 protein DMR-N9 [G 99.6 1.9E-14 4.1E-19 122.2 16.5 240 106-364 126-380 (636)
238 PF10282 Lactonase: Lactonase, 99.6 1.1E-11 2.4E-16 108.2 33.3 280 15-325 37-345 (345)
239 KOG2321 WD40 repeat protein [G 99.6 3.2E-13 6.8E-18 115.9 19.6 272 102-423 50-335 (703)
240 TIGR02800 propeller_TolB tol-p 99.6 1.2E-12 2.7E-17 118.5 24.8 233 36-325 170-416 (417)
241 PF08662 eIF2A: Eukaryotic tra 99.6 3E-13 6.5E-18 106.8 17.8 151 18-189 9-180 (194)
242 PRK04792 tolB translocation pr 99.6 1.2E-12 2.7E-17 117.9 23.9 235 37-328 199-447 (448)
243 KOG3881 Uncharacterized conser 99.6 4.4E-13 9.4E-18 109.6 18.6 258 56-395 54-326 (412)
244 COG2706 3-carboxymuconate cycl 99.6 8.1E-11 1.7E-15 96.1 31.1 289 35-351 15-327 (346)
245 TIGR02800 propeller_TolB tol-p 99.6 2.5E-12 5.5E-17 116.5 24.8 217 81-350 170-400 (417)
246 KOG2315 Predicted translation 99.6 1.7E-11 3.6E-16 105.3 27.4 318 15-391 35-392 (566)
247 KOG2314 Translation initiation 99.6 3.9E-12 8.6E-17 108.9 23.3 297 18-351 214-577 (698)
248 KOG0974 WD-repeat protein WDR6 99.5 2E-13 4.4E-18 125.0 16.2 280 14-391 7-290 (967)
249 PRK00178 tolB translocation pr 99.5 4.5E-12 9.8E-17 114.9 24.2 235 37-328 180-428 (430)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.2E-10 2.7E-15 98.9 30.8 274 36-351 27-334 (352)
251 COG4946 Uncharacterized protei 99.5 1E-10 2.3E-15 98.6 29.1 199 113-351 276-481 (668)
252 COG5354 Uncharacterized protei 99.5 3.8E-11 8.3E-16 101.9 26.4 282 13-351 31-399 (561)
253 PRK00178 tolB translocation pr 99.5 1.5E-11 3.3E-16 111.4 25.8 220 82-354 180-413 (430)
254 PRK04792 tolB translocation pr 99.5 1.5E-11 3.2E-16 111.0 25.3 221 82-355 199-433 (448)
255 COG2706 3-carboxymuconate cycl 99.5 2.1E-10 4.5E-15 93.8 29.0 285 12-326 37-345 (346)
256 KOG4190 Uncharacterized conser 99.5 2.6E-13 5.7E-18 116.1 12.8 288 7-343 728-1032(1034)
257 KOG1354 Serine/threonine prote 99.5 4.8E-12 1E-16 101.9 19.0 281 56-351 24-363 (433)
258 KOG0974 WD-repeat protein WDR6 99.5 1.2E-11 2.5E-16 113.8 21.9 152 20-190 139-290 (967)
259 KOG0309 Conserved WD40 repeat- 99.5 1.2E-12 2.7E-17 115.7 14.8 290 14-348 24-340 (1081)
260 PRK01029 tolB translocation pr 99.5 1.3E-10 2.9E-15 104.0 27.1 242 36-329 165-426 (428)
261 COG5170 CDC55 Serine/threonine 99.5 1.6E-12 3.5E-17 103.3 13.0 270 14-305 26-367 (460)
262 PRK01029 tolB translocation pr 99.5 5.2E-11 1.1E-15 106.6 24.4 227 82-354 166-410 (428)
263 KOG2041 WD40 repeat protein [G 99.5 2.8E-11 6E-16 107.1 21.4 306 14-395 14-343 (1189)
264 KOG0280 Uncharacterized conser 99.4 6E-11 1.3E-15 93.7 20.8 164 15-190 70-243 (339)
265 KOG4547 WD40 repeat-containing 99.4 1.3E-11 2.9E-16 106.6 18.7 190 117-348 6-221 (541)
266 KOG1912 WD40 repeat protein [G 99.4 3.4E-11 7.4E-16 107.4 20.7 374 2-395 43-557 (1062)
267 TIGR03300 assembly_YfgL outer 99.4 8.7E-10 1.9E-14 98.3 30.0 310 25-386 64-376 (377)
268 KOG1409 Uncharacterized conser 99.4 1.9E-11 4.1E-16 98.6 16.9 255 50-350 17-273 (404)
269 KOG4547 WD40 repeat-containing 99.4 2.2E-10 4.9E-15 99.2 23.7 193 23-245 2-221 (541)
270 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.2E-09 6.9E-14 90.5 30.2 271 3-314 36-339 (352)
271 KOG0280 Uncharacterized conser 99.4 2.1E-11 4.6E-16 96.2 13.9 206 18-246 125-335 (339)
272 KOG1912 WD40 repeat protein [G 99.4 1.2E-09 2.5E-14 98.0 25.8 160 13-188 14-186 (1062)
273 PLN02919 haloacid dehalogenase 99.4 1.3E-09 2.8E-14 107.7 29.2 283 61-351 571-892 (1057)
274 KOG4714 Nucleoporin [Nuclear s 99.3 4.1E-11 8.9E-16 93.0 13.3 169 6-189 81-255 (319)
275 KOG0309 Conserved WD40 repeat- 99.3 5.7E-11 1.2E-15 105.5 15.5 289 57-391 24-341 (1081)
276 KOG4190 Uncharacterized conser 99.3 6.2E-12 1.3E-16 107.9 9.1 248 53-345 731-986 (1034)
277 KOG1064 RAVE (regulator of V-A 99.3 3E-11 6.6E-16 117.1 14.1 193 10-246 2204-2400(2439)
278 PLN02919 haloacid dehalogenase 99.3 9.4E-09 2E-13 101.8 30.7 282 18-309 571-892 (1057)
279 KOG1064 RAVE (regulator of V-A 99.3 2.4E-11 5.3E-16 117.7 12.1 222 72-355 2181-2407(2439)
280 KOG1832 HIV-1 Vpr-binding prot 99.3 5.6E-12 1.2E-16 114.0 6.4 168 2-191 1089-1258(1516)
281 COG4946 Uncharacterized protei 99.3 1.8E-08 3.8E-13 85.5 26.3 173 22-232 327-505 (668)
282 PRK04043 tolB translocation pr 99.3 1E-08 2.2E-13 91.3 26.3 198 105-354 189-407 (419)
283 PF15492 Nbas_N: Neuroblastoma 99.3 1.6E-08 3.5E-13 80.4 23.9 243 20-316 3-270 (282)
284 TIGR03300 assembly_YfgL outer 99.3 7.4E-09 1.6E-13 92.4 25.2 269 25-344 104-376 (377)
285 KOG4532 WD40-like repeat conta 99.2 1.3E-08 2.8E-13 79.8 22.6 203 19-247 72-285 (344)
286 COG5354 Uncharacterized protei 99.2 1.1E-08 2.5E-13 87.3 23.3 265 15-339 72-421 (561)
287 PF04762 IKI3: IKI3 family; I 99.2 7.6E-08 1.7E-12 93.7 32.0 290 14-349 75-458 (928)
288 KOG0882 Cyclophilin-related pe 99.2 1.6E-09 3.5E-14 90.9 17.7 309 13-344 8-369 (558)
289 PF04762 IKI3: IKI3 family; I 99.2 2E-07 4.3E-12 90.9 34.6 319 13-349 208-566 (928)
290 KOG4532 WD40-like repeat conta 99.2 2.5E-08 5.4E-13 78.2 21.5 272 34-352 50-336 (344)
291 PF08450 SGL: SMP-30/Gluconola 99.2 3.2E-07 6.9E-12 76.5 30.0 224 19-334 4-242 (246)
292 PRK04043 tolB translocation pr 99.2 6.5E-08 1.4E-12 86.3 26.8 212 36-306 169-401 (419)
293 KOG2314 Translation initiation 99.1 7.3E-08 1.6E-12 83.4 23.3 296 59-392 212-576 (698)
294 KOG0882 Cyclophilin-related pe 99.1 3E-09 6.5E-14 89.3 14.7 265 55-351 7-309 (558)
295 PF00400 WD40: WD domain, G-be 99.1 2.4E-10 5.2E-15 64.3 5.6 38 5-42 2-39 (39)
296 COG5170 CDC55 Serine/threonine 99.1 1.8E-09 3.9E-14 86.3 12.3 249 56-350 25-312 (460)
297 PF15492 Nbas_N: Neuroblastoma 99.1 5.8E-07 1.3E-11 71.8 25.8 244 64-351 4-263 (282)
298 KOG2041 WD40 repeat protein [G 99.1 7.6E-09 1.6E-13 92.1 16.1 174 156-349 13-188 (1189)
299 PRK11138 outer membrane biogen 99.0 1.4E-06 3E-11 78.2 29.7 317 25-388 68-393 (394)
300 KOG3914 WD repeat protein WDR4 99.0 7.9E-09 1.7E-13 85.6 13.6 160 17-194 65-229 (390)
301 PF00400 WD40: WD domain, G-be 99.0 1.3E-09 2.8E-14 61.3 5.8 39 307-345 1-39 (39)
302 KOG3914 WD repeat protein WDR4 99.0 9.8E-09 2.1E-13 85.1 13.1 162 218-395 65-229 (390)
303 KOG2695 WD40 repeat protein [G 99.0 2.4E-09 5.1E-14 86.9 8.9 158 120-316 228-387 (425)
304 KOG1645 RING-finger-containing 99.0 1.1E-07 2.5E-12 78.9 17.6 266 38-347 175-461 (463)
305 PF13360 PQQ_2: PQQ-like domai 98.9 8.6E-07 1.9E-11 73.7 22.3 234 35-311 2-236 (238)
306 PF07433 DUF1513: Protein of u 98.9 7.4E-06 1.6E-10 67.7 25.6 208 17-246 7-249 (305)
307 KOG4714 Nucleoporin [Nuclear s 98.9 7.6E-08 1.6E-12 75.2 13.1 198 17-245 39-255 (319)
308 PRK11138 outer membrane biogen 98.8 5.5E-06 1.2E-10 74.4 26.0 268 26-346 120-393 (394)
309 PF07433 DUF1513: Protein of u 98.8 3.7E-06 8.1E-11 69.4 21.3 197 20-243 56-284 (305)
310 KOG2066 Vacuolar assembly/sort 98.8 1.2E-06 2.6E-11 79.6 18.6 192 14-245 39-234 (846)
311 PF06977 SdiA-regulated: SdiA- 98.8 1.4E-05 3E-10 65.1 23.2 220 8-241 15-247 (248)
312 PF13360 PQQ_2: PQQ-like domai 98.8 5.5E-06 1.2E-10 68.9 21.7 222 80-351 2-234 (238)
313 KOG4649 PQQ (pyrrolo-quinoline 98.8 4.7E-05 1E-09 60.2 27.2 110 26-144 23-133 (354)
314 KOG2066 Vacuolar assembly/sort 98.7 1.3E-06 2.7E-11 79.5 18.0 165 10-189 54-234 (846)
315 KOG1008 Uncharacterized conser 98.7 1.5E-08 3.3E-13 89.1 5.7 206 15-246 57-277 (783)
316 KOG1645 RING-finger-containing 98.7 1.6E-06 3.5E-11 72.3 16.7 87 4-93 183-270 (463)
317 KOG1920 IkappaB kinase complex 98.7 5.5E-05 1.2E-09 72.5 27.9 211 58-307 69-324 (1265)
318 KOG2114 Vacuolar assembly/sort 98.7 9.9E-06 2.1E-10 74.5 22.1 220 64-321 30-260 (933)
319 PF08450 SGL: SMP-30/Gluconola 98.7 1.8E-05 3.9E-10 66.0 22.5 195 107-349 3-215 (246)
320 KOG1275 PAB-dependent poly(A) 98.7 6.6E-07 1.4E-11 82.4 14.5 184 26-242 147-340 (1118)
321 KOG2695 WD40 repeat protein [G 98.7 1.5E-07 3.4E-12 76.6 9.1 151 30-197 228-385 (425)
322 PF00930 DPPIV_N: Dipeptidyl p 98.6 5.9E-05 1.3E-09 66.5 25.5 305 23-390 1-348 (353)
323 PF14583 Pectate_lyase22: Olig 98.6 4.9E-05 1.1E-09 65.1 23.5 111 277-389 239-370 (386)
324 KOG3617 WD40 and TPR repeat-co 98.6 4.7E-06 1E-10 76.5 17.5 110 17-134 18-131 (1416)
325 KOG2114 Vacuolar assembly/sort 98.6 2.3E-05 5.1E-10 72.2 21.8 197 21-246 30-245 (933)
326 KOG3621 WD40 repeat-containing 98.6 1.9E-05 4.1E-10 71.1 20.9 120 13-135 32-155 (726)
327 KOG1832 HIV-1 Vpr-binding prot 98.6 6.6E-08 1.4E-12 88.5 5.4 198 97-351 1095-1295(1516)
328 KOG1920 IkappaB kinase complex 98.6 2.3E-05 5.1E-10 75.0 21.6 213 103-350 68-325 (1265)
329 KOG3621 WD40 repeat-containing 98.5 2.3E-05 5E-10 70.6 19.9 124 56-189 32-155 (726)
330 PF08596 Lgl_C: Lethal giant l 98.5 5.4E-05 1.2E-09 66.7 21.3 287 16-346 3-334 (395)
331 PF06433 Me-amine-dh_H: Methyl 98.5 5.4E-05 1.2E-09 63.5 19.7 278 36-351 17-324 (342)
332 KOG1275 PAB-dependent poly(A) 98.5 3.1E-06 6.6E-11 78.2 13.4 154 15-188 178-342 (1118)
333 PRK02888 nitrous-oxide reducta 98.5 9.4E-05 2E-09 67.4 22.1 212 80-336 214-450 (635)
334 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00038 8.3E-09 55.3 26.6 123 8-136 26-167 (354)
335 PF11768 DUF3312: Protein of u 98.4 3.4E-05 7.3E-10 68.4 17.6 130 4-141 196-336 (545)
336 PF00780 CNH: CNH domain; Int 98.4 0.001 2.2E-08 56.7 26.1 246 24-316 5-266 (275)
337 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.0012 2.7E-08 58.3 26.3 271 14-336 42-346 (353)
338 PF06977 SdiA-regulated: SdiA- 98.4 0.00074 1.6E-08 55.3 22.7 223 97-344 15-247 (248)
339 cd00216 PQQ_DH Dehydrogenases 98.3 0.0023 5E-08 59.1 29.3 287 26-351 61-428 (488)
340 PF11768 DUF3312: Protein of u 98.3 1.8E-05 3.9E-10 70.1 14.2 73 13-90 258-330 (545)
341 COG0823 TolB Periplasmic compo 98.3 0.00013 2.8E-09 65.1 19.7 160 54-246 189-360 (425)
342 PRK02888 nitrous-oxide reducta 98.3 0.00012 2.7E-09 66.6 18.6 153 22-189 200-405 (635)
343 PF14655 RAB3GAP2_N: Rab3 GTPa 98.3 0.0023 5E-08 56.5 26.4 92 19-113 6-118 (415)
344 cd00216 PQQ_DH Dehydrogenases 98.3 0.0015 3.3E-08 60.3 26.1 166 27-194 111-325 (488)
345 KOG1008 Uncharacterized conser 98.3 5.5E-07 1.2E-11 79.7 3.2 207 58-305 57-275 (783)
346 PF06433 Me-amine-dh_H: Methyl 98.2 0.0014 3.1E-08 55.3 22.2 256 18-315 39-330 (342)
347 PF04053 Coatomer_WDAD: Coatom 98.2 0.00037 8E-09 62.4 19.8 148 9-189 27-174 (443)
348 COG0823 TolB Periplasmic compo 98.2 0.00015 3.2E-09 64.7 17.1 190 99-337 188-389 (425)
349 KOG1897 Damage-specific DNA bi 98.2 0.006 1.3E-07 58.1 29.2 332 16-395 489-862 (1096)
350 PF03178 CPSF_A: CPSF A subuni 98.2 0.0032 7E-08 54.9 26.1 136 36-188 2-157 (321)
351 PF04053 Coatomer_WDAD: Coatom 98.2 0.0017 3.6E-08 58.4 22.5 232 56-347 31-262 (443)
352 smart00320 WD40 WD40 repeats. 98.1 7.4E-06 1.6E-10 45.5 5.4 39 4-42 2-40 (40)
353 PF00780 CNH: CNH domain; Int 98.1 0.0047 1E-07 52.6 24.1 236 118-395 9-261 (275)
354 KOG1897 Damage-specific DNA bi 98.1 0.011 2.3E-07 56.5 29.6 153 217-389 776-942 (1096)
355 PF04841 Vps16_N: Vps16, N-ter 98.0 0.011 2.3E-07 53.3 28.0 224 82-348 62-288 (410)
356 COG3386 Gluconolactonase [Carb 98.0 0.0082 1.8E-07 51.1 22.7 228 64-336 31-274 (307)
357 COG3204 Uncharacterized protei 98.0 0.006 1.3E-07 49.9 20.1 177 10-190 81-265 (316)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.016 3.4E-07 54.0 29.2 113 26-144 69-199 (527)
359 smart00320 WD40 WD40 repeats. 98.0 3E-05 6.6E-10 42.9 5.4 39 307-345 2-40 (40)
360 PF08596 Lgl_C: Lethal giant l 97.9 0.0017 3.6E-08 57.5 18.1 218 3-244 75-335 (395)
361 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0012 2.7E-08 45.5 13.1 101 17-129 2-109 (111)
362 KOG3617 WD40 and TPR repeat-co 97.9 0.00048 1E-08 63.9 14.2 70 17-89 62-131 (1416)
363 COG3391 Uncharacterized conser 97.9 0.017 3.6E-07 51.6 27.5 265 16-328 32-309 (381)
364 PF03178 CPSF_A: CPSF A subuni 97.9 0.0099 2.1E-07 51.9 22.0 185 127-348 3-203 (321)
365 PF02897 Peptidase_S9_N: Proly 97.9 0.015 3.3E-07 52.8 24.0 250 105-396 125-411 (414)
366 PF08553 VID27: VID27 cytoplas 97.8 0.001 2.2E-08 63.2 15.6 148 70-244 492-647 (794)
367 PF14727 PHTB1_N: PTHB1 N-term 97.8 0.022 4.8E-07 50.6 27.1 292 26-348 37-361 (418)
368 KOG2395 Protein involved in va 97.8 0.0025 5.5E-08 56.1 16.3 148 70-245 344-501 (644)
369 PF02897 Peptidase_S9_N: Proly 97.8 0.027 5.8E-07 51.2 28.0 117 16-136 125-262 (414)
370 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.035 7.5E-07 51.8 27.8 161 27-193 121-338 (527)
371 COG3391 Uncharacterized conser 97.8 0.027 5.9E-07 50.3 28.3 265 38-351 13-287 (381)
372 PF04841 Vps16_N: Vps16, N-ter 97.7 0.029 6.4E-07 50.5 28.6 191 20-244 34-246 (410)
373 PF08553 VID27: VID27 cytoplas 97.7 0.01 2.2E-07 56.8 20.6 197 33-245 501-725 (794)
374 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0033 7.1E-08 43.5 13.0 103 60-183 2-109 (111)
375 PF15390 DUF4613: Domain of un 97.6 0.048 1E-06 49.3 23.8 121 14-138 56-190 (671)
376 COG3490 Uncharacterized protei 97.6 0.0037 8E-08 50.7 13.5 166 21-193 120-315 (366)
377 KOG4640 Anaphase-promoting com 97.6 0.00041 8.9E-09 62.1 8.7 94 15-113 21-115 (665)
378 KOG4640 Anaphase-promoting com 97.6 0.0004 8.6E-09 62.2 8.3 73 277-351 23-96 (665)
379 KOG4441 Proteins containing BT 97.6 0.033 7.1E-07 52.4 21.3 109 24-138 283-408 (571)
380 PF05096 Glu_cyclase_2: Glutam 97.5 0.033 7.2E-07 45.6 21.6 214 3-233 32-249 (264)
381 KOG2395 Protein involved in va 97.5 0.0034 7.4E-08 55.4 13.5 143 171-346 347-499 (644)
382 COG3386 Gluconolactonase [Carb 97.5 0.051 1.1E-06 46.5 22.6 229 21-295 31-275 (307)
383 COG3490 Uncharacterized protei 97.4 0.046 9.9E-07 44.7 19.6 248 106-389 70-348 (366)
384 PRK13616 lipoprotein LpqB; Pro 97.4 0.024 5.3E-07 53.3 18.5 152 15-187 350-524 (591)
385 PHA02713 hypothetical protein; 97.4 0.051 1.1E-06 51.2 20.7 67 286-354 463-540 (557)
386 PF07995 GSDH: Glucose / Sorbo 97.3 0.089 1.9E-06 46.0 29.3 66 277-342 255-330 (331)
387 KOG2444 WD40 repeat protein [G 97.3 0.00095 2.1E-08 52.2 6.4 64 285-348 112-178 (238)
388 PF05694 SBP56: 56kDa selenium 97.2 0.14 3.1E-06 45.0 19.6 211 25-247 86-345 (461)
389 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0018 3.9E-08 37.2 5.4 34 317-350 11-44 (47)
390 KOG4499 Ca2+-binding protein R 97.2 0.084 1.8E-06 41.9 18.4 221 70-326 26-262 (310)
391 PHA02713 hypothetical protein; 97.1 0.075 1.6E-06 50.1 18.6 65 70-137 303-378 (557)
392 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0022 4.7E-08 36.9 5.2 33 14-47 11-43 (47)
393 KOG2079 Vacuolar assembly/sort 97.1 0.033 7.1E-07 53.9 15.4 106 70-188 98-203 (1206)
394 KOG4441 Proteins containing BT 97.0 0.12 2.6E-06 48.8 18.7 190 117-354 286-506 (571)
395 PRK13616 lipoprotein LpqB; Pro 97.0 0.33 7.1E-06 45.9 21.0 167 58-244 350-527 (591)
396 KOG2444 WD40 repeat protein [G 97.0 0.0045 9.9E-08 48.5 7.3 106 26-135 70-178 (238)
397 PF15390 DUF4613: Domain of un 96.8 0.22 4.7E-06 45.4 17.5 187 15-232 20-219 (671)
398 PF10647 Gmad1: Lipoprotein Lp 96.8 0.25 5.5E-06 41.2 20.7 152 16-179 25-186 (253)
399 PF12234 Rav1p_C: RAVE protein 96.7 0.07 1.5E-06 49.9 14.5 115 16-133 31-155 (631)
400 KOG2079 Vacuolar assembly/sort 96.7 0.009 1.9E-07 57.5 8.6 101 226-346 98-202 (1206)
401 PF14870 PSII_BNR: Photosynthe 96.7 0.34 7.3E-06 41.3 23.3 162 53-241 140-301 (302)
402 PF10214 Rrn6: RNA polymerase 96.6 0.86 1.9E-05 45.1 21.6 129 157-306 145-277 (765)
403 COG3204 Uncharacterized protei 96.5 0.37 8.1E-06 39.9 20.8 189 99-313 81-270 (316)
404 COG4257 Vgb Streptogramin lyas 96.5 0.37 8.1E-06 39.4 19.2 202 105-351 63-266 (353)
405 TIGR03118 PEPCTERM_chp_1 conse 96.4 0.45 9.8E-06 39.7 21.6 231 105-351 24-283 (336)
406 KOG2280 Vacuolar assembly/sort 96.1 1.3 2.9E-05 41.8 19.1 88 35-131 63-152 (829)
407 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.77 1.7E-05 38.5 25.6 243 58-327 23-307 (336)
408 KOG4499 Ca2+-binding protein R 96.0 0.61 1.3E-05 37.3 17.6 108 161-292 161-271 (310)
409 KOG3630 Nuclear pore complex, 96.0 0.17 3.8E-06 49.6 12.6 126 105-245 102-229 (1405)
410 PF14727 PHTB1_N: PTHB1 N-term 95.9 1.2 2.6E-05 40.0 28.8 294 70-392 36-363 (418)
411 PHA03098 kelch-like protein; P 95.8 1.1 2.3E-05 42.6 17.5 150 25-193 294-469 (534)
412 PF08728 CRT10: CRT10; InterP 95.6 1.1 2.3E-05 42.9 16.2 151 26-187 49-245 (717)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 95.6 1.6 3.4E-05 39.2 26.0 74 276-350 309-401 (415)
414 PF05694 SBP56: 56kDa selenium 95.6 1.6 3.5E-05 38.8 19.7 171 19-191 134-345 (461)
415 PF10313 DUF2415: Uncharacteri 95.6 0.093 2E-06 29.2 5.6 32 15-46 1-35 (43)
416 PF10313 DUF2415: Uncharacteri 95.4 0.095 2.1E-06 29.1 5.4 33 104-136 1-35 (43)
417 KOG2377 Uncharacterized conser 95.4 0.21 4.6E-06 43.9 9.9 120 13-137 65-188 (657)
418 PRK10115 protease 2; Provision 95.3 3.3 7.1E-05 40.5 31.6 115 15-134 127-255 (686)
419 KOG2377 Uncharacterized conser 95.2 0.81 1.8E-05 40.5 12.9 103 212-331 63-167 (657)
420 PF07569 Hira: TUP1-like enhan 95.2 0.15 3.4E-06 41.2 8.3 75 171-246 23-97 (219)
421 KOG2280 Vacuolar assembly/sort 95.1 3.3 7.1E-05 39.4 19.1 73 276-351 218-291 (829)
422 PF10647 Gmad1: Lipoprotein Lp 95.0 1.8 4E-05 36.2 22.2 160 59-240 25-192 (253)
423 KOG1916 Nuclear protein, conta 95.0 0.029 6.4E-07 53.2 4.1 227 80-346 110-373 (1283)
424 PF14761 HPS3_N: Hermansky-Pud 95.0 1.5 3.2E-05 34.9 16.2 107 27-138 29-167 (215)
425 PHA02790 Kelch-like protein; P 94.9 3.3 7.1E-05 38.6 17.3 108 70-192 271-388 (480)
426 COG4257 Vgb Streptogramin lyas 94.7 2 4.4E-05 35.4 21.6 239 59-355 63-313 (353)
427 PHA03098 kelch-like protein; P 94.7 3.6 7.8E-05 39.1 17.3 67 286-354 389-471 (534)
428 COG5276 Uncharacterized conser 94.7 2.2 4.8E-05 35.6 27.6 155 15-190 87-243 (370)
429 PF14870 PSII_BNR: Photosynthe 94.6 2.6 5.6E-05 36.1 29.8 276 14-344 16-301 (302)
430 PF12234 Rav1p_C: RAVE protein 94.6 2.4 5.3E-05 40.1 15.2 125 104-244 30-156 (631)
431 PRK13684 Ycf48-like protein; P 94.5 3 6.6E-05 36.6 19.8 160 56-243 171-330 (334)
432 TIGR03074 PQQ_membr_DH membran 94.5 5.4 0.00012 39.3 20.9 75 118-195 196-285 (764)
433 KOG3630 Nuclear pore complex, 94.5 5.9 0.00013 39.8 18.9 152 159-335 102-261 (1405)
434 PF10168 Nup88: Nuclear pore c 94.4 4 8.6E-05 39.8 16.7 93 214-307 83-181 (717)
435 PRK10115 protease 2; Provision 94.3 5.9 0.00013 38.8 30.3 73 58-136 127-209 (686)
436 TIGR03074 PQQ_membr_DH membran 94.2 6.2 0.00013 38.9 25.9 114 26-144 194-354 (764)
437 PHA02790 Kelch-like protein; P 94.2 4.8 0.0001 37.5 17.7 146 25-192 271-427 (480)
438 PF11635 Med16: Mediator compl 94.2 6.5 0.00014 39.0 20.8 210 29-239 65-345 (753)
439 PF07569 Hira: TUP1-like enhan 94.2 0.38 8.3E-06 39.0 8.3 68 283-351 18-99 (219)
440 TIGR02604 Piru_Ver_Nterm putat 93.9 4.4 9.6E-05 36.2 23.0 109 59-177 15-142 (367)
441 PF14761 HPS3_N: Hermansky-Pud 93.8 2.8 6E-05 33.4 16.8 163 72-243 29-213 (215)
442 COG5167 VID27 Protein involved 93.6 2.8 6E-05 37.9 12.7 147 70-245 478-633 (776)
443 TIGR02604 Piru_Ver_Nterm putat 93.6 5.2 0.00011 35.8 24.9 104 15-123 14-142 (367)
444 KOG2247 WD40 repeat-containing 93.5 0.013 2.9E-07 51.4 -1.1 146 161-344 38-185 (615)
445 PF14583 Pectate_lyase22: Olig 93.5 5 0.00011 35.4 22.6 185 19-233 85-300 (386)
446 PF05096 Glu_cyclase_2: Glutam 93.4 3.9 8.5E-05 33.9 24.9 115 57-191 44-160 (264)
447 PF11635 Med16: Mediator compl 93.3 9.4 0.0002 37.9 20.9 126 216-342 181-345 (753)
448 COG5167 VID27 Protein involved 93.2 4.3 9.2E-05 36.8 13.3 61 285-346 571-631 (776)
449 PRK13684 Ycf48-like protein; P 93.2 5.5 0.00012 35.0 28.6 156 157-347 172-331 (334)
450 KOG1983 Tomosyn and related SN 92.7 5 0.00011 40.9 14.8 31 15-45 36-66 (993)
451 COG4590 ABC-type uncharacteriz 92.6 0.95 2.1E-05 40.0 8.5 168 53-247 216-389 (733)
452 PF08728 CRT10: CRT10; InterP 92.5 2.9 6.2E-05 40.2 12.1 116 16-133 102-245 (717)
453 COG5276 Uncharacterized conser 92.4 5.8 0.00012 33.3 26.4 157 57-246 86-243 (370)
454 KOG2247 WD40 repeat-containing 92.1 0.024 5.3E-07 49.9 -1.5 143 60-235 37-179 (615)
455 KOG4460 Nuclear pore complex, 91.9 7.1 0.00015 35.6 12.9 89 104-193 104-203 (741)
456 PF11725 AvrE: Pathogenicity f 91.8 20 0.00044 38.0 19.6 154 12-191 360-519 (1774)
457 PF13449 Phytase-like: Esteras 91.0 10 0.00022 33.2 16.5 184 157-347 19-249 (326)
458 PF12657 TFIIIC_delta: Transcr 91.0 2.6 5.6E-05 32.8 8.8 33 104-136 86-123 (173)
459 KOG1916 Nuclear protein, conta 90.9 0.18 3.8E-06 48.3 2.6 64 283-347 191-265 (1283)
460 PF10168 Nup88: Nuclear pore c 90.9 17 0.00037 35.7 24.8 86 104-191 85-182 (717)
461 PLN00033 photosystem II stabil 90.8 12 0.00026 33.7 17.5 159 57-241 238-396 (398)
462 COG4590 ABC-type uncharacteriz 90.8 4.7 0.0001 35.9 10.7 125 212-351 217-350 (733)
463 PF07676 PD40: WD40-like Beta 90.8 1.3 2.9E-05 24.1 5.2 31 101-131 6-38 (39)
464 KOG1900 Nuclear pore complex, 90.7 4.4 9.5E-05 41.3 11.6 34 315-348 240-273 (1311)
465 PF12657 TFIIIC_delta: Transcr 90.5 3.2 6.9E-05 32.3 8.9 31 318-348 86-122 (173)
466 TIGR02276 beta_rpt_yvtn 40-res 90.4 1.6 3.4E-05 24.1 5.5 31 285-315 1-32 (42)
467 PF03022 MRJP: Major royal jel 90.4 11 0.00023 32.4 19.7 197 127-335 35-253 (287)
468 PF14781 BBS2_N: Ciliary BBSom 90.3 5.6 0.00012 29.0 10.6 111 64-190 5-127 (136)
469 PF14781 BBS2_N: Ciliary BBSom 90.1 5.8 0.00013 28.9 12.2 112 19-136 3-127 (136)
470 COG3823 Glutamine cyclotransfe 89.9 8.4 0.00018 30.5 13.7 178 114-335 54-247 (262)
471 PF11715 Nup160: Nucleoporin N 89.1 3.4 7.4E-05 39.3 9.7 28 286-313 229-256 (547)
472 TIGR03606 non_repeat_PQQ dehyd 88.7 19 0.00042 33.0 14.3 55 13-67 28-88 (454)
473 TIGR02276 beta_rpt_yvtn 40-res 88.6 2 4.4E-05 23.7 5.0 31 113-143 1-31 (42)
474 KOG4460 Nuclear pore complex, 88.2 12 0.00027 34.2 11.4 79 59-139 105-203 (741)
475 PF07676 PD40: WD40-like Beta 87.8 2.8 6E-05 22.8 5.1 29 316-344 7-38 (39)
476 PF11715 Nup160: Nucleoporin N 87.6 2.8 6.2E-05 39.9 8.2 74 70-143 157-257 (547)
477 KOG1898 Splicing factor 3b, su 87.6 34 0.00073 34.5 17.1 106 221-347 939-1048(1205)
478 TIGR03606 non_repeat_PQQ dehyd 87.1 25 0.00053 32.4 29.0 57 57-115 29-90 (454)
479 PF07995 GSDH: Glucose / Sorbo 87.0 21 0.00045 31.4 13.6 52 59-114 3-59 (331)
480 KOG3616 Selective LIM binding 87.0 30 0.00066 33.4 16.4 67 14-88 14-82 (1636)
481 KOG1896 mRNA cleavage and poly 86.2 27 0.0006 35.7 13.5 143 27-185 1047-1210(1366)
482 KOG2727 Rab3 GTPase-activating 86.2 10 0.00022 37.3 10.4 32 215-246 321-353 (1244)
483 PF08801 Nucleoporin_N: Nup133 85.3 30 0.00065 31.7 14.4 31 158-189 190-220 (422)
484 PF10395 Utp8: Utp8 family; I 85.1 38 0.00081 32.7 16.0 172 14-197 129-314 (670)
485 KOG1983 Tomosyn and related SN 84.5 37 0.0008 35.0 14.2 68 277-351 201-268 (993)
486 smart00564 PQQ beta-propeller 82.8 3.9 8.4E-05 21.0 3.9 24 289-312 8-31 (33)
487 smart00036 CNH Domain found in 82.7 31 0.00067 29.9 29.4 60 25-89 12-73 (302)
488 PF07250 Glyoxal_oxid_N: Glyox 81.4 28 0.00061 28.8 10.1 144 38-192 48-201 (243)
489 KOG1900 Nuclear pore complex, 81.2 74 0.0016 33.2 16.5 160 78-246 96-274 (1311)
490 TIGR03548 mutarot_permut cycli 81.1 37 0.00081 29.7 16.6 109 25-138 72-198 (323)
491 KOG3616 Selective LIM binding 80.6 34 0.00075 33.1 11.3 111 58-187 15-125 (1636)
492 KOG4659 Uncharacterized conser 80.2 82 0.0018 33.1 24.3 381 18-422 368-827 (1899)
493 KOG3522 Predicted guanine nucl 80.0 30 0.00064 33.9 10.8 151 71-246 547-699 (925)
494 PF12768 Rax2: Cortical protei 79.7 36 0.00078 29.0 10.5 104 26-132 5-121 (281)
495 PF10433 MMS1_N: Mono-function 79.3 58 0.0013 30.8 27.6 259 23-327 219-503 (504)
496 smart00036 CNH Domain found in 78.9 43 0.00092 29.0 23.8 60 118-191 15-76 (302)
497 PF07250 Glyoxal_oxid_N: Glyox 78.3 38 0.00082 28.1 12.8 154 128-314 48-206 (243)
498 KOG3522 Predicted guanine nucl 78.2 42 0.0009 33.0 11.2 141 28-191 549-700 (925)
499 PLN02153 epithiospecifier prot 78.2 48 0.001 29.3 22.6 241 62-340 27-326 (341)
500 PF05935 Arylsulfotrans: Aryls 77.9 61 0.0013 30.3 13.6 118 20-143 153-310 (477)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-59 Score=372.69 Aligned_cols=331 Identities=22% Similarity=0.353 Sum_probs=294.3
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
++...+.||.++|.|++|+|+|..||||+.|.++|+||+.+..+..+ .++|...|.|++|+| |+..||+|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-~KgH~~WVlcvawsP--Dgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-CKGHKNWVLCVAWSP--DGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-ecCCccEEEEEEECC--CcchhhccccCCeEE
Confidence 45567899999999999999999999999999999999999888776 489999999999999 999999999999999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccC-----CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPG-----SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
+||.++++++ ...+.+|...|++++|.|- .+ .|++++.||.++|||+..+.++..+.. |..+
T Consensus 183 lwdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsg-----------HT~~ 249 (480)
T KOG0271|consen 183 LWDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSG-----------HTAS 249 (480)
T ss_pred EecCCCCCcc-cccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEecc-----------Cccc
Confidence 9999888775 3678999999999999873 33 688999999999999999998888876 7788
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc-----------cCC-
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-----------NTS- 227 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~- 227 (439)
|+|+.|--+ .++++|+.|++|++|+...+.+. ..+.+|...|+.++.+ |.+
T Consensus 250 VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~---------------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 250 VTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLC---------------RELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred eEEEEEcCC--ceEEecCCCceEEEEEccchhHH---------------Hhhcccchheeeeeccchhhhhccccccccc
Confidence 999999865 59999999999999999887642 3347888888888876 222
Q ss_pred ------------------------CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe
Q 013644 228 ------------------------ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 282 (439)
Q Consensus 228 ------------------------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 282 (439)
+.|++++ |.++.+|+..... +++..+.+|... |+.+.
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------kpi~rmtgHq~l--Vn~V~- 374 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------KPITRMTGHQAL--VNHVS- 374 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---------------cchhhhhchhhh--eeeEE-
Confidence 3488887 8899999976442 466788899876 99999
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhh
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI 361 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~ 361 (439)
||||++++|+++.|..|++|+..+|+.+..|++|-..|..++|+.|.++|++|+.|.++++|++.+.++ ..+++|...|
T Consensus 375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 375 FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 899999999999999999999999999999999999999999999999999999999999999999988 7899999999
Q ss_pred hhhhccccCcceEEEeCCCcEEEEEE
Q 013644 362 MKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
+.+. +.+++..++++..|..+++|.
T Consensus 455 f~vD-wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVD-WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEE-ecCCCceeecCCCceEEEeec
Confidence 9888 577888999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-53 Score=340.94 Aligned_cols=295 Identities=21% Similarity=0.289 Sum_probs=265.9
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeec---CCCcEEEEecC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF---TDDRKIITSSA 79 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~ 79 (439)
+-.+..+.++|..-|.|++|+|||+.||+|+.||+|++||.++++++...+.+|...|++++|.|. +..++|++++.
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence 445788999999999999999999999999999999999999999999999999999999999884 36679999999
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
||+|+|||+..+.++ ..+.+|+.+|+|+.|-.+| ++++++.|++|++|+...+...+.+.. |...
T Consensus 226 Dg~vrIWd~~~~~~~--~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkG-----------Hahw 290 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCV--RTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKG-----------HAHW 290 (480)
T ss_pred CCCEEEEEccCceEE--EEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcc-----------cchh
Confidence 999999999777666 5689999999999998776 899999999999999999988887766 5666
Q ss_pred eEEEeec-----------CCC------------------------CcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 160 LNAIVID-----------PRN------------------------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 160 v~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
|+.++.+ |.+ +..|++|+.|.++.+|+....+
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k------------- 357 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK------------- 357 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-------------
Confidence 7777765 222 2469999999999999977544
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
.+.....+|..-|+.+.|+||++++|+++ |..|++|+.+++ +.+..|.+|-.. |..++ |
T Consensus 358 -kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG----------------k~lasfRGHv~~--VYqva-w 417 (480)
T KOG0271|consen 358 -KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG----------------KFLASFRGHVAA--VYQVA-W 417 (480)
T ss_pred -cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc----------------chhhhhhhccce--eEEEE-e
Confidence 34445589999999999999999999998 999999999998 788999999986 99999 8
Q ss_pred CCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 284 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 284 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
+.|.++|++|+.|.++++|++++.++...+.+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.4e-52 Score=335.74 Aligned_cols=291 Identities=24% Similarity=0.357 Sum_probs=260.8
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
+...--|-+.+|..+.|++|++.|||||.+|.++||+..+...+. .+.+|...|.++.|+|..++..|++++.||++++
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~-~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ-TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE-EEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 333444667899999999999999999999999999999985544 4689999999999999423678999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|++.+...+ ..+.+|...|..++|+|+|+ +|++++.|.+-++||+++++....... |...|.+++|
T Consensus 246 w~~~~e~~l--~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEG-----------Hs~~v~~iaf 311 (459)
T KOG0272|consen 246 WKLSQETPL--QDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEG-----------HSKGVFSIAF 311 (459)
T ss_pred eccCCCcch--hhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcc-----------cccccceeEe
Confidence 999876655 56899999999999999998 577999999999999999887665544 7888999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
+|+| .++++|+.|..-+|||++++.. ..++.+|..+|.++.|+|+|..||+|+ |++++|||++
T Consensus 312 ~~DG-SL~~tGGlD~~~RvWDlRtgr~---------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 312 QPDG-SLAATGGLDSLGRVWDLRTGRC---------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cCCC-ceeeccCccchhheeecccCcE---------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 9998 8999999999999999999874 234478999999999999999999997 9999999998
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEecCCCceeEeecccccceEEE
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 323 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 323 (439)
.. .....+.+|.+- |..+. |+| .|.+|++++.|+++++|...++.+++.+.||.+.|.++
T Consensus 376 ~r----------------~~ly~ipAH~nl--VS~Vk-~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 376 MR----------------SELYTIPAHSNL--VSQVK-YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred cc----------------ccceecccccch--hhheE-ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence 87 567888999987 89999 787 88999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEecCCeEEEecc
Q 013644 324 EPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
.+++++++++|++.|.++++|..
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred EeccCCceEEEeccCceeeeccC
Confidence 99999999999999999999963
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-48 Score=300.30 Aligned_cols=295 Identities=18% Similarity=0.285 Sum_probs=263.5
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+++..++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+..++..+ .-....|..++|+| .++++|+|+.|+.
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sP--Sg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSP--SGNFVACGGLDNK 120 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECC--CCCeEEecCcCce
Confidence 35667899999999999999999999999999999999999887766654 45678999999999 9999999999999
Q ss_pred EEEEEcccC--c--eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 83 VRLGQIFED--G--RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 83 i~iw~~~~~--~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..||++.+. + ....+.+.+|++.+.|+.|.+|+. |++++.|.+..+||+++++.+..+.. |.+
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~G-----------H~g 187 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFHG-----------HTG 187 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEecC-----------Ccc
Confidence 999999744 1 233456899999999999999764 56999999999999999999888875 788
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
.|.++.+.|..++.|++|+.|+..++||++.+.. .+.+.+|...|+++.|.|+|.-+++|+ |+.
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---------------~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---------------VQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcce---------------eEeecccccccceEEEccCCCeeeecCCCce
Confidence 9999999996669999999999999999998763 233489999999999999999999998 999
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 317 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 317 (439)
+++||++.. +.+..+........|++++ ||..|++|++|..|..+.+||.-.++.+..+.+|.
T Consensus 253 cRlyDlRaD----------------~~~a~ys~~~~~~gitSv~-FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 253 CRLYDLRAD----------------QELAVYSHDSIICGITSVA-FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE 315 (343)
T ss_pred eEEEeecCC----------------cEEeeeccCcccCCceeEE-EcccccEEEeeecCCceeEeeccccceEEEeeccC
Confidence 999999987 5666676665556699999 89999999999999999999999999999999999
Q ss_pred cceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 318 HVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 318 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
+.|+++..+|||..++||+.|.+++||.
T Consensus 316 NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999994
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.2e-46 Score=280.82 Aligned_cols=290 Identities=19% Similarity=0.284 Sum_probs=250.2
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCce
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRV 106 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v 106 (439)
-+|+|+|.|.+||+|...++.+..++ +.....|+.+...| ++..||+++. ..|++||++++...+...+.+|+..|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 57999999999999999999988775 45567899999999 9999988876 58999999998887788899999999
Q ss_pred EEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEe
Q 013644 107 YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 186 (439)
Q Consensus 107 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 186 (439)
+.+.|..+|+ .+++|++||+++|||++.....+.+. +..+|+++..+|.. ..|++|..+|.|++||
T Consensus 87 taVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~------------~~spVn~vvlhpnQ-teLis~dqsg~irvWD 152 (311)
T KOG0315|consen 87 TAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQ------------HNSPVNTVVLHPNQ-TELISGDQSGNIRVWD 152 (311)
T ss_pred EEEEEeecCe-EEEecCCCceEEEEeccCcccchhcc------------CCCCcceEEecCCc-ceEEeecCCCcEEEEE
Confidence 9999999998 68899999999999999976666654 56789999999965 7899999999999999
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEP 265 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
+.... +...........|.++...|+|.+++++. .|.+++|++...... ..+.++
T Consensus 153 l~~~~--------------c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------s~l~P~ 208 (311)
T KOG0315|consen 153 LGENS--------------CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------SELEPV 208 (311)
T ss_pred ccCCc--------------cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc----------ccceEh
Confidence 99765 33444455668899999999999999996 899999999875322 233566
Q ss_pred eeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC-ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEe
Q 013644 266 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 266 ~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
..++.|... +..+. +||++++||+++.|.+++||+.++. +....+.+|+..+...+||.||+||+||+.|+.+++|
T Consensus 209 ~k~~ah~~~--il~C~-lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 209 HKFQAHNGH--ILRCL-LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred hheecccce--EEEEE-ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence 778888876 88888 8999999999999999999999988 6677889999999999999999999999999999999
Q ss_pred ccCCCCC-CCCCCchhhh
Q 013644 345 APMPTDF-PPLPDNAEKI 361 (439)
Q Consensus 345 ~~~~~~~-~~~~~~~~~~ 361 (439)
++..++. ....+|.+..
T Consensus 286 ~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 286 DLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred ccccCceeeecCCccccc
Confidence 9987764 6667766554
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-47 Score=305.99 Aligned_cols=282 Identities=18% Similarity=0.261 Sum_probs=256.5
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC-CCcEEEEeCCCCcEEEEEc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG-SPYIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~ 133 (439)
+-..+|..+.|++ ++..|++|+.+|.+++|+..+...+ ..+.+|...|.++.|+|. ....+++|+.||++++|++
T Consensus 173 gd~rPis~~~fS~--ds~~laT~swsG~~kvW~~~~~~~~--~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSR--DSKHLATGSWSGLVKVWSVPQCNLL--QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeec--CCCeEEEeecCCceeEeecCCccee--EEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 5567899999999 9999999999999999999877554 669999999999999998 3446889999999999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
.+..++..+.. |..+|..++|+|+| ++|++++.|.+-++||++++.. .....+
T Consensus 249 ~~e~~l~~l~g-----------H~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~E---------------lL~QEG 301 (459)
T KOG0272|consen 249 SQETPLQDLEG-----------HLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSE---------------LLLQEG 301 (459)
T ss_pred CCCcchhhhhc-----------chhhheeeeecCCC-ceeeecccccchhhcccccchh---------------hHhhcc
Confidence 99887777765 77889999999987 9999999999999999998763 223379
Q ss_pred CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 214 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
|...|.+++|.++|.++++|+ |..-++||++++ +.+..+.+|... |.++. |+|+|..||+
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg----------------r~im~L~gH~k~--I~~V~-fsPNGy~lAT 362 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG----------------RCIMFLAGHIKE--ILSVA-FSPNGYHLAT 362 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeecccC----------------cEEEEecccccc--eeeEe-ECCCceEEee
Confidence 999999999999999999998 999999999998 788999999886 99999 8999999999
Q ss_pred eCCCCeEEEEecCCCceeEeecccccceEEEeecC-CCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhccccC
Q 013644 293 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRE 370 (439)
Q Consensus 293 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~ 370 (439)
|+.|++++|||++..+.+.++.+|.+-|+.|.|+| .|.+|+|++.|++++||...+..+ +.+.+|...|+... ...+
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d 441 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD-ISPD 441 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE-eccC
Confidence 99999999999999999999999999999999999 678999999999999999988765 88999999998877 6778
Q ss_pred cceEEEeCCCcEEEEEE
Q 013644 371 DHSRITLTPDVIMHVLR 387 (439)
Q Consensus 371 ~~~~~~~s~dg~v~~w~ 387 (439)
+..+++++.|.++++|.
T Consensus 442 ~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQAIATSSFDRTIKLWR 458 (459)
T ss_pred CceEEEeccCceeeecc
Confidence 88999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-43 Score=271.64 Aligned_cols=294 Identities=19% Similarity=0.278 Sum_probs=242.8
Q ss_pred ccceeeeeeccccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCc----ceeeeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRR----EKFSYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
++.+..+|++|++.|+.++..+. .+.+++++.|.++.+|++.... .+.+.+.+|...|..+..++ ++++.+++
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~--dg~~alS~ 81 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS--DGNFALSA 81 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc--CCceEEec
Confidence 46677899999999999999986 5789999999999999986542 23445689999999999999 99999999
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
+.|+++++||+.+++.. +.+.+|...|.+++|++++. .+++|+.|.+|++|++............ +.
T Consensus 82 swD~~lrlWDl~~g~~t--~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~----------~~ 148 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGEST--RRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDS----------HR 148 (315)
T ss_pred cccceEEEEEecCCcEE--EEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCC----------Cc
Confidence 99999999999988554 66899999999999999998 5779999999999998865433322211 25
Q ss_pred eeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C
Q 013644 158 IRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 235 (439)
Q Consensus 158 ~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d 235 (439)
..|.|+.|+|.. ..++++++.|++|++||+++.+. .....+|.+.++.++++|||.++++|+ |
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------------~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------------RTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------hhccccccccEEEEEECCCCCEEecCCCC
Confidence 679999999973 47999999999999999998653 344478999999999999999999997 9
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
|.+.+||++.+ +....+.+. ..|.+++ |+|+.-.|+.+.. ..|+|||+.++.++..+..
T Consensus 214 g~~~LwdL~~~----------------k~lysl~a~---~~v~sl~-fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 214 GEAMLWDLNEG----------------KNLYSLEAF---DIVNSLC-FSPNRYWLCAATA-TSIKIWDLESKAVVEELKL 272 (315)
T ss_pred ceEEEEEccCC----------------ceeEeccCC---CeEeeEE-ecCCceeEeeccC-CceEEEeccchhhhhhccc
Confidence 99999999877 344444333 3499999 8998776666654 5699999999988766542
Q ss_pred ----c-----ccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 316 ----D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 316 ----h-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
. .....+++|+++|..|++|-.|+.|++|.+.
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2 2245678999999999999999999999874
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.2e-44 Score=277.29 Aligned_cols=295 Identities=24% Similarity=0.413 Sum_probs=258.3
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
++..+.||++.|+.+.|+|+|.+||||+.|..|.+|++.....-...+++|.+.|..+.|.+ +++.|++++.|.+|+.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEEE
Confidence 34567899999999999999999999999999999998766655666789999999999999 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
||+++++.. +..++|...|+++.-+.-|..++.+++.|+++++||+++...++.+. .+.+++++.|
T Consensus 117 wD~~tG~~~--rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------~kyqltAv~f 182 (338)
T KOG0265|consen 117 WDAETGKRI--RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------------NKYQLTAVGF 182 (338)
T ss_pred Eecccceee--ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc------------cceeEEEEEe
Confidence 999999887 56889999999999777888899999999999999999988877765 3556999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
..++ ..+.+|+-|+.|++||++..+. ...+.+|...|+.+..+|+|.++.+-+ |.++++||++
T Consensus 183 ~d~s-~qv~sggIdn~ikvWd~r~~d~---------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 183 KDTS-DQVISGGIDNDIKVWDLRKNDG---------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred cccc-cceeeccccCceeeeccccCcc---------------eEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 9876 7899999999999999988653 344589999999999999999999987 9999999997
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcce--eeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT--VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
.-. ...+++..+.+|..... ...+. |+|+++++.+|+.|..+++||..+...+..+.||.+.|++
T Consensus 247 p~~------------p~~R~v~if~g~~hnfeknlL~cs-wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 247 PFA------------PSQRCVKIFQGHIHNFEKNLLKCS-WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred ccC------------CCCceEEEeecchhhhhhhcceee-ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 542 12245677777665433 45556 8999999999999999999999999999999999999999
Q ss_pred EeecCCCcEEEEEecCCeEEEec
Q 013644 323 LEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 323 ~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
++|+|...+|.+++.|.+|.+=+
T Consensus 314 ~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 314 VDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999998633
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-44 Score=310.17 Aligned_cols=385 Identities=18% Similarity=0.225 Sum_probs=284.5
Q ss_pred cccceeeeeec-cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 2 KRINLCGKLHG-HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 2 ~~~~~~~~l~~-h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
++.++++.+++ |++||.-++|+|.|.+|++|+.|+.++|||+..+..... +++|.+.|.++.|+|......|++|..|
T Consensus 92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~-fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS-FKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE-ecCCCceEEEEEeCCccchhheeecCCC
Confidence 44566778888 999999999999999999999999999999999887776 5899999999999995455568999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC---------C
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN---------S 151 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~ 151 (439)
+++++||+++... +...+..|...|++++|.+++.. +++++.|..+.+||+.+-+..+.++..+..+. .
T Consensus 171 ~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~-~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 171 GTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLE-LLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGG 248 (775)
T ss_pred ceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCce-EEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCC
Confidence 9999999986554 34567889999999999999874 66999999999999977655554432211000 0
Q ss_pred C--C---CCcee------------------e-------------------------------------------------
Q 013644 152 K--Q---PMNSI------------------R------------------------------------------------- 159 (439)
Q Consensus 152 ~--~---~~~~~------------------~------------------------------------------------- 159 (439)
+ . .+..+ +
T Consensus 249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence 0 0 00000 0
Q ss_pred ---------------------------------------eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCC
Q 013644 160 ---------------------------------------LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 200 (439)
Q Consensus 160 ---------------------------------------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 200 (439)
|.++....+| .+|++|+.|.++++|.+.+..
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~--------- 398 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC--------- 398 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc---------
Confidence 1111111111 244444444444444442211
Q ss_pred CcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceee
Q 013644 201 PVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 278 (439)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (439)
..........+|...|.+++++..+ .+|++++ |.++++|++........ ...+........|... |+
T Consensus 399 --~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~~~~~~t~~aHdKd--IN 467 (775)
T KOG0319|consen 399 --SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIVLTCRYTERAHDKD--IN 467 (775)
T ss_pred --chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cceehhhHHHHhhccc--cc
Confidence 1111222335788888888887665 5777776 99999999976321111 1111222233455554 99
Q ss_pred eEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCc
Q 013644 279 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN 357 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~ 357 (439)
+++ ++|+.+++|+|+.|.+.+||+++......++.||...|.++.|+|..+.++|+|.|++|+||.+.+... +++.+|
T Consensus 468 ~Va-ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH 546 (775)
T KOG0319|consen 468 CVA-IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH 546 (775)
T ss_pred ceE-ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc
Confidence 999 899999999999999999999999999999999999999999999999999999999999999988765 889999
Q ss_pred hhhhhhhhccccCcceEEEeCCCcEEEEEEecccceeeeecccccccccCCccccceEEEeeeCCC
Q 013644 358 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS 423 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (439)
...|.... +-.++..++++++||-+++|++++.++.. .++.|+|. ++++.....
T Consensus 547 ~~aVlra~-F~~~~~qliS~~adGliKlWnikt~eC~~---------tlD~H~Dr--vWaL~~~~~ 600 (775)
T KOG0319|consen 547 TSAVLRAS-FIRNGKQLISAGADGLIKLWNIKTNECEM---------TLDAHNDR--VWALSVSPL 600 (775)
T ss_pred cceeEeee-eeeCCcEEEeccCCCcEEEEeccchhhhh---------hhhhccce--eEEEeecCc
Confidence 99988776 56678899999999999999999998875 44455555 555544433
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.5e-45 Score=299.75 Aligned_cols=296 Identities=20% Similarity=0.305 Sum_probs=258.3
Q ss_pred ceeeeeeccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 5 NLCGKLHGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.......+.+.+|..+|.+++|++ ++..+++++.|+.|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~--~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN--CGTSFLSASFDRFL 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc--cCCeeeeeecceee
Confidence 45788999999999999999 8999999999999999999886555666789999999999999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
++||++++++..... -...++|+.|+|++.+++++|+.|+.|+.||+++++.++.+.. |-+.|..+
T Consensus 283 KlwDtETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-----------hLg~i~~i 348 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-----------HLGAILDI 348 (503)
T ss_pred eeeccccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-----------hhhheeee
Confidence 999999998875433 2367899999999988999999999999999999998777654 67789999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
.|-+.| ..+++.+.|+.++||+.+..-.++ .....+.....++...|++.++++-+ |+.|.+|.
T Consensus 349 ~F~~~g-~rFissSDdks~riWe~~~~v~ik--------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 349 TFVDEG-RRFISSSDDKSVRIWENRIPVPIK--------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred EEccCC-ceEeeeccCccEEEEEcCCCccch--------------hhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 999987 899999999999999998754221 12233345567889999999999987 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
+... ......+.+.+|...+.-..+. |||||++|++|+.||.+.+||.++.+++..+++|.+++..
T Consensus 414 ~~~~-------------~r~nkkK~feGh~vaGys~~v~-fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 414 TVPP-------------FRLNKKKRFEGHSVAGYSCQVD-FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred cccc-------------cccCHhhhhcceeccCceeeEE-EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 7654 2335567889999888888888 8999999999999999999999999999999999999999
Q ss_pred EeecCCCc-EEEEEecCCeEEEec
Q 013644 323 LEPHPHIP-MFATCGIEKTVKLWA 345 (439)
Q Consensus 323 ~~~s~~~~-~l~s~~~dg~i~iw~ 345 (439)
+.|+|... .+||++.||.|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 99999765 699999999999996
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-43 Score=304.55 Aligned_cols=353 Identities=16% Similarity=0.183 Sum_probs=288.4
Q ss_pred cceeeeeeccccceEEEEECCCC--CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTG--DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
-.+.+.|+||.+.|.++.|+|+- ..|++|..|+++++||+.+.......+..|...|++++|++ ++..+++++.|.
T Consensus 137 ~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDk 214 (775)
T KOG0319|consen 137 GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDK 214 (775)
T ss_pred CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCc
Confidence 34678999999999999999965 45899999999999999976654555689999999999999 999999999999
Q ss_pred cEEEEEcccCceeeeE----------------------------------------------------------------
Q 013644 82 QVRLGQIFEDGRMDTK---------------------------------------------------------------- 97 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~---------------------------------------------------------------- 97 (439)
.+.+||+.+.+.....
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 9999987432211000
Q ss_pred -----------------------------------------------------------------EecCCCCceEEEEEc
Q 013644 98 -----------------------------------------------------------------RLGKHQGRVYKLAVE 112 (439)
Q Consensus 98 -----------------------------------------------------------------~~~~~~~~v~~i~~~ 112 (439)
.+.+|++.|.++...
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 011177888888855
Q ss_pred cCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcc
Q 013644 113 PGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW 192 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 192 (439)
.+|- +|++|+.|.++++|.++.+........ ....|...|.+++++..+..+|++++.|+++++|++...+.
T Consensus 375 ~~g~-llat~sKD~svilWr~~~~~~~~~~~a-------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 375 SSGD-LLATGSKDKSVILWRLNNNCSKSLCVA-------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred ccCc-EEEEecCCceEEEEEecCCcchhhhhh-------hhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 5664 889999999999998854433222211 11237888999999888888999999999999999987331
Q ss_pred cCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC
Q 013644 193 YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH 271 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (439)
. .+...+..+.....|...|++++++|+.+++++++ |.+.++|++... ....++.+|
T Consensus 447 ~------~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----------------~l~~vLsGH 504 (775)
T KOG0319|consen 447 T------AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----------------RLLGVLSGH 504 (775)
T ss_pred c------cccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------------eEEEEeeCC
Confidence 1 11122233445578999999999999999999998 999999999865 688899999
Q ss_pred CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 272 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 272 ~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
... +.++. |+|..+.++++|.|++|+||.+.+..++++|.||...|..+.|-.+++.|++++.||-|++|++++.+.
T Consensus 505 ~RG--vw~V~-Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 505 TRG--VWCVS-FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred ccc--eEEEE-eccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 987 99999 899999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred -CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 352 -PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
..+..|..++..... .+....+++++.||.+.+|.--+.+
T Consensus 582 ~~tlD~H~DrvWaL~~-~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 582 EMTLDAHNDRVWALSV-SPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhhhhhccceeEEEee-cCccceeEecCCCeEEEEeecCcHH
Confidence 889999999988774 4444488999999999999765443
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-41 Score=280.16 Aligned_cols=352 Identities=16% Similarity=0.233 Sum_probs=271.7
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeee--cCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYL--SGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
|+...+++.|..-|.|+.|+|||.++||++.||+|.+||=.+++.+..+- .+|++.|.+++|+| |+..+++++.|.
T Consensus 180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~SaDk 257 (603)
T KOG0318|consen 180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP--DSTQFLTVSADK 257 (603)
T ss_pred eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC--CCceEEEecCCc
Confidence 56677889999999999999999999999999999999999998776642 38999999999999 999999999999
Q ss_pred cEEEEEcccCceeee-----------------------------------------EEecCCCCceEEEEEccCCCcEEE
Q 013644 82 QVRLGQIFEDGRMDT-----------------------------------------KRLGKHQGRVYKLAVEPGSPYIIY 120 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~i~~~~~~~~~l~ 120 (439)
+++|||+.+.+.... +.+.+|...|+++..+|+++ .|+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~ 336 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIY 336 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEE
Confidence 999999976543221 13456999999999999997 577
Q ss_pred EeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCC----
Q 013644 121 SCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI---- 196 (439)
Q Consensus 121 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 196 (439)
+|+.||.|.-|+..++..-+.... .|...|.+++-+.. ..+++.+.|.++++.++.........
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~----------~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGK----------GHTNQIKGMAASES--GELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred eeccCceEEEEecCCccccccccc----------cccceEEEEeecCC--CcEEEEecCCeEEEEecccCcccccceeec
Confidence 999999999999998875544311 16778999998874 36888889999999987544322211
Q ss_pred CCCCC-cccc---------c--cccccc--------CCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCC
Q 013644 197 SSDTP-VDTF---------C--PRHLIG--------KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 197 ~~~~~-~~~~---------~--~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 255 (439)
..++. +... + ...++. .-.....+++++|++..++.|. |+.+++|.+....
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~-------- 476 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE-------- 476 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc--------
Confidence 10000 0000 0 000111 1234567899999999999987 9999999998751
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE-eecccccceEEEeecCCCcEEEE
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFAT 334 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s 334 (439)
......+..|... +++++ +|||+.|||+|...+.+.+||..+.+... .+.-|...|.+++|+|+..++||
T Consensus 477 ------l~ee~~~~~h~a~--iT~va-ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 477 ------LKEEAKLLEHRAA--ITDVA-YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT 547 (603)
T ss_pred ------ccceeeeecccCC--ceEEE-ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe
Confidence 1233345566665 99999 89999999999999999999999887643 34459999999999999999999
Q ss_pred EecCCeEEEeccCCCCC--CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 335 CGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 335 ~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
|+-|-.|.||+++.... .....|...+..+.| .++..+++.+.|..+++|++.
T Consensus 548 GSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w--lde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 548 GSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW--LDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccccceEEEEEccChhhheEeccccccCceeEEE--ecCceEEeccCcceeEEeccc
Confidence 99999999999965432 333346666555543 346689999999999999874
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-43 Score=277.37 Aligned_cols=295 Identities=23% Similarity=0.348 Sum_probs=264.1
Q ss_pred CcccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 1 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 1 ~~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
+.+..+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++. ...+++|...+..++|.. .|.+|++++.|
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-e~~LrGHt~sv~di~~~a--~Gk~l~tcSsD 171 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-ERSLRGHTDSVFDISFDA--SGKYLATCSSD 171 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-hhhhhccccceeEEEEec--CccEEEecCCc
Confidence 346677888999999999999999999999999999999999999987 455799999999999999 99999999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
-.+++||..+. ..+...+.+|...|.+++|-|.|.+ +++++.|.+|+.|++.++-++..+.. |...|
T Consensus 172 l~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~~~-----------h~ewv 238 (406)
T KOG0295|consen 172 LSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTFPG-----------HSEWV 238 (406)
T ss_pred cchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEeccC-----------chHhE
Confidence 99999999763 2333567889999999999999985 66999999999999999999888865 56689
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC--------------
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-------------- 226 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 226 (439)
..+..+.+| .++++++.|.++++|-+.++++ ...+..|..+|.+++|.|.
T Consensus 239 r~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~---------------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 239 RMVRVNQDG-TIIASCSNDQTLRVWVVATKQC---------------KAELREHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred EEEEecCCe-eEEEecCCCceEEEEEeccchh---------------hhhhhccccceEEEEecccccCcchhhccCCCC
Confidence 999999987 8999999999999999998753 2233778888999988653
Q ss_pred -CCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 227 -SELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 227 -~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
+.++.+++ |++|++||+.++ .++.++.+|.+. |..++ |+|.|+||+++.+|+++++||+
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg----------------~cL~tL~ghdnw--Vr~~a-f~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTG----------------MCLFTLVGHDNW--VRGVA-FSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred CccEEEeecccceEEEEeccCC----------------eEEEEEecccce--eeeeE-EcCCCeEEEEEecCCcEEEEEe
Confidence 25888887 999999999998 799999999987 99999 8999999999999999999999
Q ss_pred CCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
+++++...+..|...|+++.|+.+..+++||+-|.++++|.-
T Consensus 364 ~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 364 KNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999963
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-41 Score=279.32 Aligned_cols=377 Identities=15% Similarity=0.161 Sum_probs=276.0
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcE-------
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRK------- 73 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~------- 73 (439)
........+.+|..+++-..|+|.|-|+|+|...|+|||||....+ .+...++.-.++|..++|++ ++..
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~--ds~RI~avGEG 124 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF--DSKRIAAVGEG 124 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC--CCcEEEEEecC
Confidence 3455667788999999999999999999999999999999976532 22222333444555555555 4444
Q ss_pred --------------------------------------EEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCC
Q 013644 74 --------------------------------------IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGS 115 (439)
Q Consensus 74 --------------------------------------l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 115 (439)
+++|+.|++|.+|+=. .......+..|..-|+|+.|+|||
T Consensus 125 rerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP--PFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 125 RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP--PFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred ccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC--CeeeeecccccccceeeEEECCCC
Confidence 4444445555444311 111123455688999999999999
Q ss_pred CcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCC
Q 013644 116 PYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP 195 (439)
Q Consensus 116 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 195 (439)
. ++++++.||.+.+||-.+++.+..+.. ...|++.|.+++|+||+ ..+++++.|.+++|||+.+.+++..
T Consensus 203 ~-~Fat~gsDgki~iyDGktge~vg~l~~--------~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 203 S-RFATAGSDGKIYIYDGKTGEKVGELED--------SDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred C-eEEEecCCccEEEEcCCCccEEEEecC--------CCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEE
Confidence 8 688999999999999999998877753 22389999999999997 8999999999999999999877665
Q ss_pred CCCCCCcccc----------------------------cccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCC
Q 013644 196 ISSDTPVDTF----------------------------CPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMG 246 (439)
Q Consensus 196 ~~~~~~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 246 (439)
+.....+... .+...+.+|...|+++..+|++++|.+++ ||.|.-|+...+
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 3332221110 12345678999999999999999999998 999999998776
Q ss_pred CCCCCC------CC-----Cc-cc---------------------------------------------ccccccceeEe
Q 013644 247 LGPSPL------SL-----SP-ED---------------------------------------------LQKREEPQVYS 269 (439)
Q Consensus 247 ~~~~~~------~~-----~~-~~---------------------------------------------~~~~~~~~~~~ 269 (439)
...... .+ .. .+ +.....+..++
T Consensus 353 ~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~ 432 (603)
T KOG0318|consen 353 TSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ 432 (603)
T ss_pred cccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe
Confidence 422110 00 00 00 00001111122
Q ss_pred CCCC------cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCcee--EeecccccceEEEeecCCCcEEEEEecCCeE
Q 013644 270 GHRN------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEKTV 341 (439)
Q Consensus 270 ~~~~------~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 341 (439)
.+.. .-...+++ ++|++..++.|+.|+.|++|.+..+.+. ..+..|.++|+++++|||+.|||++...+.+
T Consensus 433 ~~~~~~~~~~~y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 433 DQTKVSSIPIGYESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred cCCcceeeccccccceEE-EcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 1111 11245666 8999999999999999999999876543 3456799999999999999999999999999
Q ss_pred EEeccCCCCC--CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 342 KLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 342 ~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
.+|++.+++. ..+.-|..++..+. |.++..+++++|-|-.|.+|.+.+....
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVA-WSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEE-eCCCceEEEeccccceEEEEEccChhhh
Confidence 9999998876 33444888887777 5777889999999999999999876443
No 15
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=280.38 Aligned_cols=296 Identities=21% Similarity=0.301 Sum_probs=248.1
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc--eeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE--KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+..+.|+.|++.|.-+.||++|+|||||+.|.+..+|.+..... +...+.+|..+|..+.|+| |+++|++++.+..
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP--DdryLlaCg~~e~ 292 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP--DDRYLLACGFDEV 292 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC--CCCeEEecCchHh
Confidence 44577899999999999999999999999999999999865543 4455789999999999999 9999999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
+.+||+.++....... .++...+.+.+|.|||.. +++|+.|+++..||+..... ...... ....|.+
T Consensus 293 ~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~-~~W~gv----------r~~~v~d 359 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNIL-GNWEGV----------RDPKVHD 359 (519)
T ss_pred eeeccCCcchhhhhcc-cCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchh-hccccc----------ccceeEE
Confidence 9999999987753322 235688999999999985 67999999999999986542 222211 1235899
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-cCCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~ 241 (439)
++..++| ..+++.+.|..|++|+..+..... .-....+|+++..+.+++++.+. .+..+.+|
T Consensus 360 lait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~----------------lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 360 LAITYDG-KYVLLVTVDKKIRLYNREARVDRG----------------LISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred EEEcCCC-cEEEEEecccceeeechhhhhhhc----------------cccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 9999998 788888899999999988644211 12235679999999999988887 59999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceE
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 321 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 321 (439)
|++.. ..++.+.||.....+..-+|-..+..++++|++|+.|+||+..+++++..+.||...|+
T Consensus 423 Dl~e~----------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 423 DLEEN----------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN 486 (519)
T ss_pred ecchh----------------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence 99866 67889999998878887774445668999999999999999999999999999999999
Q ss_pred EEeecCCCc-EEEEEecCCeEEEeccCC
Q 013644 322 QLEPHPHIP-MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 322 ~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 348 (439)
+++|+|..+ ++|+||+||+||||.+..
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999765 799999999999999864
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.1e-42 Score=280.53 Aligned_cols=327 Identities=18% Similarity=0.258 Sum_probs=264.5
Q ss_pred eeeeccccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcc------eeee-------ecCCcccEEEEEEeecCCCcE
Q 013644 8 GKLHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRRE------KFSY-------LSGHLDNIFQTRIMPFTDDRK 73 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~------~~~~-------~~~h~~~v~~~~~~~~~~~~~ 73 (439)
+.++ |+.+|.+.+|+|-.. .+++|+.|.+.++|++..... ..+. -...+..|++++|+. +|..
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~--~G~~ 249 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN--DGTL 249 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--CCCe
Confidence 3444 999999999999665 899999999999999874110 0000 012346799999999 9999
Q ss_pred EEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 74 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
||+|+.||.+++|+.. +... ..+..|+++|.++.|+..|.| |++++.|+++.+||..++...+.+..
T Consensus 250 LatG~~~G~~riw~~~-G~l~--~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~--------- 316 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD-GNLI--STLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEF--------- 316 (524)
T ss_pred EEEeecCcEEEEEecC-chhh--hhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeee---------
Confidence 9999999999999984 4444 458889999999999999996 56999999999999999988887765
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
|..+-..+.|-.+ .-|++.+.|+.|+++.+.... | ...+.+|.+.|.++.|+|.|.+|+++
T Consensus 317 --~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~---------P------~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 317 --HSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR---------P------VKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred --ccCCccceEEecC--ceEeecCCCceEEEEEecCCC---------c------ceeeecccCceEEEEECCCCceEEEe
Confidence 3444466777664 589999999999999987643 2 23336799999999999999999999
Q ss_pred c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC---------ceEEEeCCCCeEEEEe
Q 013644 234 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---------EYVMSGSDCGHLFIWK 303 (439)
Q Consensus 234 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~---------~~l~~~~~dg~i~iwd 303 (439)
+ |++++||..... .....+.+|... |..+. |+|.| ..+++++.|++|++||
T Consensus 378 SdD~TlkiWs~~~~----------------~~~~~l~~Hske--i~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQS----------------NSVHDLQAHSKE--IYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred cCCCeeEeeecCCC----------------cchhhhhhhccc--eeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 7 999999998765 466677777765 77777 67754 4789999999999999
Q ss_pred cCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEE
Q 013644 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM 383 (439)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v 383 (439)
+..+.++..|..|+.+|.+++|+|+|+++|+|+.||.|.+|+...+++..-......+..+.|.... ..+...-.||.+
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G-~kl~~~~sd~~v 517 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG-DKLGACASDGSV 517 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC-CEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999999998874433344445555544444 555555568888
Q ss_pred EEEEec
Q 013644 384 HVLRLQ 389 (439)
Q Consensus 384 ~~w~~~ 389 (439)
.+.+++
T Consensus 518 cvldlr 523 (524)
T KOG0273|consen 518 CVLDLR 523 (524)
T ss_pred eEEEec
Confidence 888874
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=252.93 Aligned_cols=298 Identities=20% Similarity=0.256 Sum_probs=240.5
Q ss_pred CcccceeeeeeccccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCc---ceeeeecCCcccEEEEEEeecCCCcEEEE
Q 013644 1 MKRINLCGKLHGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRR---EKFSYLSGHLDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 1 ~~~~~~~~~l~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 76 (439)
|.++..++.+++|.+.|..++|+|- |..||||+.|..||+|+...+. +...+-.+|+..|.+++|+| .|++|++
T Consensus 1 m~~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~ 78 (312)
T KOG0645|consen 1 MDRLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLAS 78 (312)
T ss_pred CccceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEE
Confidence 4567889999999999999999997 9999999999999999988532 22233358999999999999 9999999
Q ss_pred ecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 77 SSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 77 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
++.|.++.||.-..++......+.+|...|.|++|+++|. +||+++.|..|-||.+..+......... ..|
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL--------~~H 149 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVL--------QEH 149 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeee--------ccc
Confidence 9999999999988777777788999999999999999998 6899999999999999865543333221 117
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 235 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d 235 (439)
...|..+.|+|.. .+|++++.|.+|++|+-.... .......+.+|...|.+++|+|.|..|++++ |
T Consensus 150 tqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred cccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC------------CeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 7789999999976 799999999999999876211 1233445578888999999999999998887 9
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC------ce
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------KL 309 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~ 309 (439)
++++||-..+. +.... ...+..+.| . ...|++++.|+.|++|..... ++
T Consensus 217 ~tv~Iw~~~~~---------------------~~~~~-sr~~Y~v~W-~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l 271 (312)
T KOG0645|consen 217 GTVSIWRLYTD---------------------LSGMH-SRALYDVPW-D--NGVIASGGGDDAIRLFKESDSPDEPSWNL 271 (312)
T ss_pred cceEeeeeccC---------------------cchhc-ccceEeeee-c--ccceEeccCCCEEEEEEecCCCCCchHHH
Confidence 99999975432 11111 123777774 3 678999999999999986542 12
Q ss_pred e-EeecccccceEEEeecCC-CcEEEEEecCCeEEEeccC
Q 013644 310 V-RLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 310 ~-~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 347 (439)
+ ..-..|...|++++|.|. .++|++++.||.|++|.+.
T Consensus 272 ~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 272 LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 2 233468889999999995 6689999999999999874
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=251.34 Aligned_cols=278 Identities=19% Similarity=0.261 Sum_probs=236.9
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc-eeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE-KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
-.+.++++...+.|+.+...|+++.||+|+. ..||+||+.+..+ ....+.+|+..|+++.|.. +|+.+++|+.||+
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~--dgrWMyTgseDgt 106 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC--DGRWMYTGSEDGT 106 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEee--cCeEEEecCCCce
Confidence 4567888877889999999999999999886 6799999998875 4555689999999999999 9999999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
++|||++.... .+...|..+|+++..+|+... |++|..+|.|++||+....+...+... ....|.+
T Consensus 107 ~kIWdlR~~~~---qR~~~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe----------~~~~i~s 172 (311)
T KOG0315|consen 107 VKIWDLRSLSC---QRNYQHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPE----------DDTSIQS 172 (311)
T ss_pred EEEEeccCccc---chhccCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCC----------CCcceee
Confidence 99999987443 344558899999999999875 569999999999999988766555332 2456999
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+...|+| .+++.+...|.+++|++-+.+. ...+.|...+..|.+.+..+.++|++++|++++ |.+++||
T Consensus 173 l~v~~dg-sml~a~nnkG~cyvW~l~~~~~---------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 173 LTVMPDG-SMLAAANNKGNCYVWRLLNHQT---------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred EEEcCCC-cEEEEecCCccEEEEEccCCCc---------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 9999998 8999999999999999987542 233456666789999999999999999999997 9999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceE
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 321 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 321 (439)
+.++. ++....+.+|... +..++ ||.||+||++|+.|+.+++|++..++.++...+|.....
T Consensus 243 n~~~~---------------~kle~~l~gh~rW--vWdc~-FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~v 304 (311)
T KOG0315|consen 243 NTDDF---------------FKLELVLTGHQRW--VWDCA-FSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAV 304 (311)
T ss_pred ecCCc---------------eeeEEEeecCCce--EEeee-eccCccEEEecCCCCceeecccccCceeeecCCcccccE
Confidence 98753 2455677888765 89999 899999999999999999999999999999999998888
Q ss_pred EEeec
Q 013644 322 QLEPH 326 (439)
Q Consensus 322 ~~~~s 326 (439)
|++..
T Consensus 305 c~~ln 309 (311)
T KOG0315|consen 305 CVALN 309 (311)
T ss_pred EEEee
Confidence 87753
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-40 Score=265.05 Aligned_cols=340 Identities=15% Similarity=0.180 Sum_probs=270.4
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
-+.+|..|+++|.+++.+|+.+++|||+.|..-.||+..++..... +.+|+..|+++.|+. ++.+||+|+.+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-ltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-LTGHKDSVTCCSFSH--DGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-ecCCCCceEEEEEcc--CceEEEecCCCccEEE
Confidence 3568999999999999999999999999999999999999986555 589999999999999 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|+..++..... +...-..+.-+.|+|.+. +|++|+.||.+.+|.+.++...+.+.. |..++++-.|
T Consensus 133 ~~~stg~~~~~--~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~G-----------h~~~ct~G~f 198 (399)
T KOG0296|consen 133 FKVSTGGEQWK--LDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSG-----------HNSPCTCGEF 198 (399)
T ss_pred EEcccCceEEE--eecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecC-----------CCCCcccccc
Confidence 99988876533 445567888999999876 788999999999999998876666655 6778999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
.|+| +.++++..||+|++|++.+++.+..+. ........++.++..+..++.++ ++.+++-+..
T Consensus 199 ~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~--------------~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 199 IPDG-KRILTGYDDGTIIVWNPKTGQPLHKIT--------------QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG 263 (399)
T ss_pred cCCC-ceEEEEecCceEEEEecCCCceeEEec--------------ccccCcCCccccccccceeEeccCCccEEEEccc
Confidence 9997 899999999999999999987433221 22244566777777777777776 7777777766
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCc-ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEE
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 323 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 323 (439)
++.......- ..+.....+... ..|..+. ++..-.+.|+|+-||+|.|||+...++...+. |..+|+.+
T Consensus 264 sgKVv~~~n~--------~~~~l~~~~e~~~esve~~~-~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l 333 (399)
T KOG0296|consen 264 SGKVVNCNNG--------TVPELKPSQEELDESVESIP-SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKL 333 (399)
T ss_pred cceEEEecCC--------CCccccccchhhhhhhhhcc-cccccchhhcccccceEEEEecccchhheecc-CCCceEEE
Confidence 5521100000 000111111111 1234444 45566788999999999999999888777766 88889999
Q ss_pred eecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 324 EPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
.|-+ ..+|++++.+|.|+.||..++.+ ..+.+|...+.... ..++.+++++.|.|++.+||.++
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence 9998 78999999999999999998887 67889999988777 45578899999999999999875
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=249.43 Aligned_cols=286 Identities=23% Similarity=0.339 Sum_probs=247.4
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
.++.|..|+++|.++.|+-||+|.++++.|.+|++|+...+..+.++ .+|...|..++.+. |+..+++++.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~--Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSS--DNSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccc--cccccccCCCCceEEE
Confidence 35678899999999999999999999999999999999998777664 89999999999998 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc--eeeEEeeccCCCCCCCCceeeeEEE
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA--TRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
||+.+++.. +.+.+|.+.|+.++|+.+.. ++++|+.|.++++||-+.... ++.+.. ....|.++
T Consensus 86 wDV~TGkv~--Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde-----------a~D~V~Si 151 (307)
T KOG0316|consen 86 WDVNTGKVD--RRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE-----------AKDGVSSI 151 (307)
T ss_pred EEcccCeee--eecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh-----------hcCceeEE
Confidence 999999887 66999999999999999887 889999999999999987654 444432 24558888
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
.... ..+++|+.||+++.||++.+++.. ..-..+|+++.|+++++....++ ++.+++.|
T Consensus 152 ~v~~---heIvaGS~DGtvRtydiR~G~l~s-----------------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 152 DVAE---HEIVAGSVDGTVRTYDIRKGTLSS-----------------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred Eecc---cEEEeeccCCcEEEEEeecceeeh-----------------hhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 8864 689999999999999999987422 23467899999999999877776 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccc-eE
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VN 321 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~ 321 (439)
-.++ +.++.+++|.+...-..++ +......+++|++||.|++||+.....+..+..+... |.
T Consensus 212 k~tG----------------klL~sYkGhkn~eykldc~-l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~ 274 (307)
T KOG0316|consen 212 KETG----------------KLLKSYKGHKNMEYKLDCC-LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVT 274 (307)
T ss_pred cchh----------------HHHHHhcccccceeeeeee-ecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEE
Confidence 9988 7889999999876666666 7888899999999999999999999999999988876 89
Q ss_pred EEeecCCCcEEEEEecCCeEEEecc
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
+++++|.-..|+++. ++.+..|.-
T Consensus 275 dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 275 DLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred eeecccCccceeEec-CCceeceee
Confidence 999999887777775 445666643
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.3e-42 Score=277.52 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=241.6
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
+-+|..|.|.|+|+.|++|+..|.+.+|+..+-. ...++..|..+|.++.|++ ++.++++|+.+|.|++|+..-...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEecccchhhh
Confidence 3579999999999999999999999999974432 2344679999999999999 999999999999999999854433
Q ss_pred eeeEEecC-CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 94 MDTKRLGK-HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 94 ~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
. .+.. |...|++++|+|+.. .|++++.||+|+|||....+....+.. |.-.|.+++|+|.. .+
T Consensus 173 k---~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~G-----------HgwdVksvdWHP~k-gL 236 (464)
T KOG0284|consen 173 K---IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRG-----------HGWDVKSVDWHPTK-GL 236 (464)
T ss_pred H---HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheecc-----------CCCCcceeccCCcc-ce
Confidence 2 2444 559999999999877 578999999999999999988888765 66779999999986 79
Q ss_pred EEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCC
Q 013644 173 FAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 251 (439)
+++|+.|..|++||.+++.++.. +..|+..|..+.|+|++.+|++++ |..++++|+++.
T Consensus 237 iasgskDnlVKlWDprSg~cl~t---------------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----- 296 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLAT---------------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----- 296 (464)
T ss_pred eEEccCCceeEeecCCCcchhhh---------------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----
Confidence 99999999999999999885332 267899999999999999999998 999999999865
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEecCCCceeEee-cccccceEEEeecCCC
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHI 329 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~ 329 (439)
+.++.+++|... ++++. |+| ...+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|
T Consensus 297 -----------kEl~~~r~Hkkd--v~~~~-WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 297 -----------KELFTYRGHKKD--VTSLT-WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred -----------HHHHHhhcchhh--heeec-cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence 678899999987 99999 566 5578899999999999998855555444 4789999999999999
Q ss_pred cEEEEEecCCeEEEecc
Q 013644 330 PMFATCGIEKTVKLWAP 346 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~ 346 (439)
.+|++|+.|.++++|.-
T Consensus 363 hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTR 379 (464)
T ss_pred eeEeecCCCcceeeecc
Confidence 99999999999999975
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-40 Score=252.00 Aligned_cols=292 Identities=16% Similarity=0.253 Sum_probs=234.6
Q ss_pred ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce---eeeEEecCCCCceEEEEEccCCCcEEEEeCC
Q 013644 48 EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR---MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124 (439)
Q Consensus 48 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 124 (439)
.+..++.+|++.|+.++..+. +.+.+++++.|.++.+|++..... ...+.+.+|...|..++.+++++ ++++++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~sw 83 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASW 83 (315)
T ss_pred eeeeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-eEEeccc
Confidence 345567899999999999983 577899999999999999975543 23577899999999999999998 4669999
Q ss_pred CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 125 DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 125 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
|+++++||+.+++..+.+.. |...|.+++|+|++ ..+++|+.|.+|++|+......
T Consensus 84 D~~lrlWDl~~g~~t~~f~G-----------H~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck------------ 139 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVG-----------HTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK------------ 139 (315)
T ss_pred cceEEEEEecCCcEEEEEEe-----------cCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE------------
Confidence 99999999999988888876 77789999999987 8999999999999999876432
Q ss_pred ccccccccC-CCccEEEEEEccC--CCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeE
Q 013644 205 FCPRHLIGK-NNIHITGLAYSNT--SELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 280 (439)
Q Consensus 205 ~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 280 (439)
...... +...|.++.|+|+ .-++++++ |+.+++||+++. +....+.+|... ++.+
T Consensus 140 ---~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----------------~l~~~~~gh~~~--v~t~ 198 (315)
T KOG0279|consen 140 ---YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----------------QLRTTFIGHSGY--VNTV 198 (315)
T ss_pred ---EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----------------chhhcccccccc--EEEE
Confidence 122122 2788999999998 56788877 999999999876 677788888876 8889
Q ss_pred EeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCch-
Q 013644 281 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA- 358 (439)
Q Consensus 281 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~- 358 (439)
. +||||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.. ..+....
T Consensus 199 ~-vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~ 275 (315)
T KOG0279|consen 199 T-VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGI 275 (315)
T ss_pred E-ECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccc
Confidence 8 89999999999999999999999999988776 67899999999987666555 466799999988764 2222111
Q ss_pred -------hhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 359 -------EKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 359 -------~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
.+......++.++..++++-.|+.|++|.+.
T Consensus 276 g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1111122244456666677777778888764
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.6e-41 Score=267.19 Aligned_cols=292 Identities=18% Similarity=0.326 Sum_probs=254.6
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
.++.+.++||.+-|.|+++.|.+.+|+||+.|++|+|||+.+++.... +.+|...|..+++++ ...||++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-ltGhi~~vr~vavS~--rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-LTGHIETVRGVAVSK--RHPYLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-ecchhheeeeeeecc--cCceEEEecCCCee
Confidence 467788999999999999999999999999999999999999976655 689999999999999 89999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
+.||++..+.+ +.+.+|-..|.|++.+|.-. +|++|+.|.++++||+++...+..+.. |...|..+
T Consensus 218 KCwDLe~nkvI--R~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~G-----------H~~~V~~V 283 (460)
T KOG0285|consen 218 KCWDLEYNKVI--RHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSG-----------HTNPVASV 283 (460)
T ss_pred EEEechhhhhH--HHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecC-----------CCCcceeE
Confidence 99999887766 55889999999999999887 788999999999999999988888776 77789999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEc
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEK 243 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~ 243 (439)
.+.|.+ ..+++|+.|++|++||++.++.. ..+..|...+.+++.+|....+|+++-..|+.|++
T Consensus 284 ~~~~~d-pqvit~S~D~tvrlWDl~agkt~---------------~tlt~hkksvral~lhP~e~~fASas~dnik~w~~ 347 (460)
T KOG0285|consen 284 MCQPTD-PQVITGSHDSTVRLWDLRAGKTM---------------ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL 347 (460)
T ss_pred EeecCC-CceEEecCCceEEEeeeccCcee---------------EeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence 999887 58999999999999999988632 23367889999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc--------
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-------- 315 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------- 315 (439)
..+ ...+.+.+|..- +.++. .. ...++++|+++|.+.+||.++|-..+.++.
T Consensus 348 p~g----------------~f~~nlsgh~~i--intl~-~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~ 407 (460)
T KOG0285|consen 348 PEG----------------EFLQNLSGHNAI--INTLS-VN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE 407 (460)
T ss_pred Ccc----------------chhhccccccce--eeeee-ec-cCceEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence 877 566778888875 77777 33 446888999999999999998865544421
Q ss_pred cccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 316 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
....|.+.+|...|..|+||..|.+|++|.-+.
T Consensus 408 sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 408 SEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 235789999999999999999999999998643
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.1e-40 Score=254.25 Aligned_cols=290 Identities=16% Similarity=0.231 Sum_probs=248.3
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
+++++|.+.|.++.|++ |.++|++++.||.+.|||.-+..... .++-....|..++|+|.++ +++.|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYSPSGN-FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecC--CcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEECCCCC-eEEecCcCceeEE
Confidence 56899999999999999 99999999999999999998877663 4555678999999999998 6889999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
|++.+........... ....|.+.+.|..|-++ ..|++++.|.++.+||+++++. ...
T Consensus 124 y~ls~~d~~g~~~v~r-----~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~---------------~~~ 181 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSR-----ELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQ---------------TQV 181 (343)
T ss_pred Eecccccccccceeee-----eecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceE---------------EEE
Confidence 9998653221111110 12238888999999985 5899999999999999999873 233
Q ss_pred ccCCCccEEEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 211 IGKNNIHITGLAYSN-TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
+.+|.+.|.++.++| +++.+++++ |+..++||++.+ ...+.|.+|... |+++. |.|+|.
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~----------------~c~qtF~ghesD--INsv~-ffP~G~ 242 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----------------QCVQTFEGHESD--INSVR-FFPSGD 242 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc----------------ceeEeecccccc--cceEE-EccCCC
Confidence 479999999999999 889999997 999999999988 788999999988 99999 789999
Q ss_pred eEEEeCCCCeEEEEecCCCceeEeecccc--cceEEEeecCCCcEEEEEecCCeEEEeccCCCC-CCCCCCchhhhhhhh
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN 365 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~ 365 (439)
-+++|++|++.++||++..+.+..+.... .+|++++||..|++|++|..|.++.+||.-.++ ...+.+|..+|..+.
T Consensus 243 afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence 99999999999999999999988887433 589999999999999999999999999975555 477889999887665
Q ss_pred ccccCcceEEEeCCCcEEEEEE
Q 013644 366 KQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 366 ~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
..+++..+.++|.|..+++|.
T Consensus 323 -~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 323 -VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -ECCCCcEEEecchhHheeecC
Confidence 566788899999999999994
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=281.87 Aligned_cols=353 Identities=17% Similarity=0.262 Sum_probs=272.1
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-eeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
.|.+.+++.||...|+++.|+.|.++|++|+.|-+++||.++..+.. ...+.+|.+.|.++-|.. +...+++.+.||
T Consensus 134 pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG 211 (893)
T KOG0291|consen 134 PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDG 211 (893)
T ss_pred cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCc
Confidence 46678899999999999999999999999999999999999876653 334679999999999998 899999999999
Q ss_pred cEEEEEccc-----------------------Cce---------eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 82 QVRLGQIFE-----------------------DGR---------MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 82 ~i~iw~~~~-----------------------~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
.+.+|.... ++. .....+......|++.+|++... +|+++-..|...
T Consensus 212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~ 290 (893)
T KOG0291|consen 212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFG 290 (893)
T ss_pred eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeE
Confidence 999998751 111 00111222335677777777654 666776666666
Q ss_pred EEEccCCCcee----------eE----------------------EeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 130 HFDLRSDSATR----------LF----------------------YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 130 iwd~~~~~~~~----------~~----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
+|++.....+. .. .-....-.-+++.|...+++++++||| .++++|+
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~ 369 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGA 369 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEecc
Confidence 66654322110 00 000000012345588899999999998 8999999
Q ss_pred cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCc
Q 013644 178 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 256 (439)
.||.|++||..++- |... +..|...|+.+.|+..|+.+++++ ||+|+.||+...
T Consensus 370 eDgKVKvWn~~Sgf--------------C~vT-FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY---------- 424 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGF--------------CFVT-FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY---------- 424 (893)
T ss_pred CCCcEEEEeccCce--------------EEEE-eccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------
Confidence 99999999999865 4333 378999999999999999999998 999999999765
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC-eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEE
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 335 (439)
+..+++..... ....+++ ..|.|.++++|+.|. .|++|++++|+++..+.||.++|.+++|+|++..||++
T Consensus 425 ------rNfRTft~P~p-~Qfscva-vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 425 ------RNFRTFTSPEP-IQFSCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred ------ceeeeecCCCc-eeeeEEE-EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence 45556655443 3467777 789999999999885 69999999999999999999999999999999999999
Q ss_pred ecCCeEEEeccCCC--CCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 336 GIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 336 ~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
|.|.+||+|++-.. ...+++ ....+..+. +.+++..++..+-||.|-+|+.+.....
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs-frPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS-FRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred cccceEEEEEeeccCceeeeEe-eccceeEEE-EcCCCCeEEEEEecceEEEEEhhhceee
Confidence 99999999998554 333333 344444444 5567778888888999999998766544
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-40 Score=290.86 Aligned_cols=250 Identities=23% Similarity=0.430 Sum_probs=221.7
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc------------------------------ceeeeecCCc
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR------------------------------EKFSYLSGHL 57 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------------------------------~~~~~~~~h~ 57 (439)
.++.--...++|..|++|+.+||.|-.|..|++|.+...+ .....+.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 3444444679999999999999999999999999986311 1223467999
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS 137 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 137 (439)
++|+.+.|+| +.++|++++.|+++|+|.+.+..... ...+|..+|+.+.|+|.| +.|||++.|++.++|......
T Consensus 452 GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V--~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 452 GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLV--IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred Cceeeeeecc--cccceeeccCCcceeeeecccceeEE--EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC
Confidence 9999999999 99999999999999999999887774 477999999999999998 578999999999999999988
Q ss_pred ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc
Q 013644 138 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 217 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (439)
+.+.+.+ |...|.|+.|+|.. +++++|+.|.++++||+.++.
T Consensus 527 PlRifag-----------hlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~-------------------------- 568 (707)
T KOG0263|consen 527 PLRIFAG-----------HLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN-------------------------- 568 (707)
T ss_pred chhhhcc-----------cccccceEEECCcc-cccccCCCCceEEEEEcCCCc--------------------------
Confidence 8888876 67789999999975 999999999999999998764
Q ss_pred EEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC
Q 013644 218 ITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 297 (439)
Q Consensus 218 i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg 297 (439)
.++.|.||..+ |.+++ |||+|++|++|+.||
T Consensus 569 ----------------------------------------------~VRiF~GH~~~--V~al~-~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 569 ----------------------------------------------SVRIFTGHKGP--VTALA-FSPCGRYLASGDEDG 599 (707)
T ss_pred ----------------------------------------------EEEEecCCCCc--eEEEE-EcCCCceEeecccCC
Confidence 33667788876 99999 899999999999999
Q ss_pred eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 298 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 298 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+||.|.+|++||+...
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999999999998643
No 27
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-39 Score=278.50 Aligned_cols=348 Identities=18% Similarity=0.264 Sum_probs=279.7
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
.+.-+|.||..+|+++.|...|..||+||.|+.|.+||+-......+ +.+|+..|+.+-|.. +.+++++.+.|+.|+
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r-L~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR-LRGHKDSITQALFLN--GDSFLVSVSKDSMIK 174 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE-eecchHHHhHHhccC--CCeEEEEeccCceEE
Confidence 46678999999999999999999999999999999999988776666 589999999999997 789999999999999
Q ss_pred EEEcccCceeeeEEecC---------------------------------------------------------------
Q 013644 85 LGQIFEDGRMDTKRLGK--------------------------------------------------------------- 101 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~--------------------------------------------------------------- 101 (439)
+||+.+..+..+.....
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 99997654432211000
Q ss_pred --------------------------------------------------------------------------------
Q 013644 102 -------------------------------------------------------------------------------- 101 (439)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (439)
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence
Q ss_pred -------------------------------------CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 102 -------------------------------------HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 102 -------------------------------------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
|...|.+++++.+.. ++ ..+..+.+++|+..+.++++++.+
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~-~~-~Sga~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI-LL-ASGAGESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce-ee-eecCCCcEEEEEccCcceeEEecc
Confidence 667788888887764 34 444567899999998888888864
Q ss_pred eccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc
Q 013644 145 SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS 224 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 224 (439)
..+.+..|-|.+ +++++|...|.+.+||+.+...+ ....+|.+.|.+++.+
T Consensus 413 -------------~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~---------------Eti~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 413 -------------GYILASKFVPGD-RYIVLGTKNGELQVFDLASASLV---------------ETIRAHDGAIWSISLS 463 (888)
T ss_pred -------------ccEEEEEecCCC-ceEEEeccCCceEEEEeehhhhh---------------hhhhccccceeeeeec
Confidence 357888899955 89999999999999999876532 2336899999999999
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEe
Q 013644 225 NTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 303 (439)
Q Consensus 225 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd 303 (439)
|+++.+++++ |.+|++||+..... .+. .....-.....+++.-. ..+.|+. +||||++||.+--|++++||-
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~-~~g--t~~k~lsl~~~rtLel~---ddvL~v~-~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVS-VPG--TQKKVLSLKHTRTLELE---DDVLCVS-VSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEec-cCc--ccceeeeeccceEEecc---ccEEEEE-EcCCCcEEEEEeccCeEEEEE
Confidence 9999999987 99999999864311 000 00000111112222222 2489999 899999999999999999999
Q ss_pred cCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcE
Q 013644 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVI 382 (439)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 382 (439)
+.+.+....+.||.-||.||..|||+++++|||.|.+|+||-++=|.. +.+.+|...++.+.. -+...+..+++.|+.
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F-~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF-LPKTHLFFTCGKDGK 615 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE-cccceeEEEecCcce
Confidence 999999999999999999999999999999999999999999986665 778889999888874 447889999999999
Q ss_pred EEEEEeccccee
Q 013644 383 MHVLRLQRRQTL 394 (439)
Q Consensus 383 v~~w~~~~~~~~ 394 (439)
++.||-..-+..
T Consensus 616 vKqWDg~kFe~i 627 (888)
T KOG0306|consen 616 VKQWDGEKFEEI 627 (888)
T ss_pred EEeechhhhhhh
Confidence 999987665543
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-39 Score=264.29 Aligned_cols=278 Identities=21% Similarity=0.315 Sum_probs=242.7
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 94 (439)
..|++++|+.+|..||+|+.||.+++|+.... . ...+..|+++|.++.|+. .|.+|++++.|+++.+||..++...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l-~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-L-ISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch-h-hhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEE
Confidence 57999999999999999999999999997554 3 344689999999999999 9999999999999999999888776
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
.. +.-|..+-..+.|-.+.. |++++.|+.|+++.+....+...+.. |.+.|.++.|+|.+ .+|+
T Consensus 312 q~--f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~G-----------H~g~V~alk~n~tg-~LLa 375 (524)
T KOG0273|consen 312 QQ--FEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTFIG-----------HHGEVNALKWNPTG-SLLA 375 (524)
T ss_pred Ee--eeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcceeeec-----------ccCceEEEEECCCC-ceEE
Confidence 44 555777767888887764 78999999999999999888888876 78889999999987 8999
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC---------CEEEEe-cCCeEEEEEcc
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---------ELLISY-NDELVYLFEKN 244 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~-~d~~i~i~d~~ 244 (439)
+++.|++++||.+..... ..-+.+|...|..+.|+|.| ..++++ .|+.|++||+.
T Consensus 376 S~SdD~TlkiWs~~~~~~---------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQSNS---------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EecCCCeeEeeecCCCcc---------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 999999999999876542 22337889999999999875 255555 49999999999
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEe
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 324 (439)
.+ .++..|..|..+ |.+++ |+|+|+|+|+|+.||.|.+|+.+++++++...+ .+.|..++
T Consensus 441 ~g----------------v~i~~f~kH~~p--Vysva-fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~ 500 (524)
T KOG0273|consen 441 SG----------------VPIHTLMKHQEP--VYSVA-FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELC 500 (524)
T ss_pred CC----------------ceeEeeccCCCc--eEEEE-ecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEE
Confidence 88 678889999887 99999 899999999999999999999999999999886 46699999
Q ss_pred ecCCCcEEEEEecCCeEEEeccC
Q 013644 325 PHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 325 ~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
|+.+|..|..+-.|+.+++-|+.
T Consensus 501 Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 501 WNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999998863
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=288.68 Aligned_cols=297 Identities=24% Similarity=0.454 Sum_probs=251.2
Q ss_pred eeeeeecc-ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 6 LCGKLHGH-KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 6 ~~~~l~~h-~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
+...+.+| ...|.++.|+++|++|++++.++.+++|+..... .....+.+|...|.+++|+| ++.++++++.|++|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~--d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP--DGSYLLSGSDDKTL 227 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC--CCcEEEEecCCceE
Confidence 34556554 7899999999999999999999999999996665 23333479999999999999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
++||+... ....+.+.+|...|++++|+|+++ ++++|+.|++|++||++++++...+.. |...|+++
T Consensus 228 riwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~-----------hs~~is~~ 294 (456)
T KOG0266|consen 228 RIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKG-----------HSDGISGL 294 (456)
T ss_pred EEeeccCC-CeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeec-----------cCCceEEE
Confidence 99999433 223366889999999999999994 899999999999999999999888876 77889999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCc-cEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+|++++ ++|++++.|+.|++||+.++... +.......... .++++.|+|++++++++. |+.+++|
T Consensus 295 ~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 295 AFSPDG-NLLVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred EECCCC-CEEEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 999987 89999999999999999998721 00111111122 699999999999999997 8899999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCc-ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-ccc
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHV 319 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~ 319 (439)
|+..+ .....+.+|... ..+.+.. .++.++++++|+.|+.|++|++.++..+..+.+| ...
T Consensus 362 ~l~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~ 424 (456)
T KOG0266|consen 362 DLRSG----------------KSVGTYTGHSNLVRCIFSPT-LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAA 424 (456)
T ss_pred EccCC----------------cceeeecccCCcceeEeccc-ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCc
Confidence 99877 577788888775 1233444 5789999999999999999999999999999999 889
Q ss_pred eEEEeecCCCcEEEEEe--cCCeEEEeccC
Q 013644 320 VNQLEPHPHIPMFATCG--IEKTVKLWAPM 347 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 347 (439)
+..+.++|..+++++++ .|+.+++|...
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999998 78999999864
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-38 Score=273.69 Aligned_cols=287 Identities=23% Similarity=0.411 Sum_probs=243.4
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
+++|++|.++|++++|+|++++|++++.||.|++|++.++..... +..|...+..+.|+| ++++|++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LKGHTGPVRDVAASA--DGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-EecCCcceeEEEECC--CCCEEEEEcCCCeEEEE
Confidence 467889999999999999999999999999999999988765444 468889999999999 88999999999999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
++.+++.. ..+..|...+.++.|+|++. ++++++.++.|++||+++++....+.. |...+.++.|+
T Consensus 79 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~ 144 (289)
T cd00200 79 DLETGECV--RTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRG-----------HTDWVNSVAFS 144 (289)
T ss_pred EcCcccce--EEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEecc-----------CCCcEEEEEEc
Confidence 99876554 44667888999999999976 677888899999999997776655542 56679999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccC
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNM 245 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 245 (439)
|++ .++++++.++.+++||++.++.. .....+...+.++.|+|+++.+++++ ++.+++||+..
T Consensus 145 ~~~-~~l~~~~~~~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 145 PDG-TFVASSSQDGTIKLWDLRTGKCV---------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CcC-CEEEEEcCCCcEEEEEccccccc---------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 985 78888888999999999865422 12245677899999999997777775 99999999986
Q ss_pred CCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
+ .....+..|... +.++. ++|++.++++++.+|.|++|++.+++....+..|...|.+++|
T Consensus 209 ~----------------~~~~~~~~~~~~--i~~~~-~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 209 G----------------KCLGTLRGHENG--VNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269 (289)
T ss_pred C----------------ceecchhhcCCc--eEEEE-EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence 5 344455455543 88888 7999999999998999999999999999999999999999999
Q ss_pred cCCCcEEEEEecCCeEEEec
Q 013644 326 HPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 326 s~~~~~l~s~~~dg~i~iw~ 345 (439)
+|++++|++++.||.|++|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 99999999999999999996
No 31
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-40 Score=275.04 Aligned_cols=370 Identities=52% Similarity=0.922 Sum_probs=314.7
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
+++++...|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+.....+..+|...|....|.|+.+...+++++.||
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 57888999999999999999999999999999999999999999999989889999999999999988889999999999
Q ss_pred cEEEEEcccCceee-eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 82 QVRLGQIFEDGRMD-TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 82 ~i~iw~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
.+++=.+...+... ...+..|.++|..++.-|+.++-|++++.|+.+.-+|++.+.....+.+....+. .....
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-----~~v~L 284 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-----ERVGL 284 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc-----cceee
Confidence 99998776554443 6778899999999999999999999999999999999999887777765433211 13468
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-CCEEEEecCCeEE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYNDELVY 239 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~d~~i~ 239 (439)
.+++.+|.+.+.+++|+.|..+++||.+..... ....++..+++.++.......|++++|+.+ +.+|++.+|..|+
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 899999999889999999999999999875432 223467788999888888889999999955 5888888999999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccc
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 319 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 319 (439)
++.-..+....+....+. .....+.+++|.+..+|.++.||.|..+|+++|+.-|.|.||+-.+++.+..+.+....
T Consensus 362 LF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~V 438 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHV 438 (559)
T ss_pred EeccccccCCCCCCCcch---hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccce
Confidence 997776665555544443 22344559999999999999999999999999999999999999999999999988889
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhcccc-CcceEEEeCCCcE
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVI 382 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~ 382 (439)
|+|+.-+|.-..||++|-|.-|+||.+.+.+....+.....++..+.... ...+-++...|..
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN~~~~~ed~~~~t~~~d~~ 502 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRNKRERDEDSLTVTDPFDQY 502 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhhccccccccccccCcHHHH
Confidence 99999999999999999999999999988887777778888888777763 4556666666643
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.3e-37 Score=299.96 Aligned_cols=293 Identities=15% Similarity=0.257 Sum_probs=230.6
Q ss_pred eeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc----c---eeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR----E---KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+..|.+.|.+++|+|+|++||+|+.|+.|+||+..... . ....+ .+...+.+++|+|. .+.+|++++.||+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~-~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSY-IKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccC-CCCEEEEEeCCCe
Confidence 45589999999999999999999999999999975421 0 11112 34568999999873 5789999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
|++||+.+++.+ ..+.+|...|++++|+|.+..+|++|+.|+.|++||++++.....+.. ...+.+
T Consensus 557 v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------------~~~v~~ 622 (793)
T PLN00181 557 VQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------------KANICC 622 (793)
T ss_pred EEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------------CCCeEE
Confidence 999999877655 557889999999999974334788999999999999998877665542 335889
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+.|++.++.+|++|+.||.|++||++..+ .+.....+|...|.++.|. ++.++++++ |+.|++|
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~--------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPK--------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCC--------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 99976556899999999999999998643 1122336788899999997 566666665 9999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee--------
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------- 313 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 313 (439)
|+...... .....+..+.+|... +..+. ++|++++|++|+.|+.|++|+......+..+
T Consensus 688 d~~~~~~~----------~~~~~l~~~~gh~~~--i~~v~-~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 688 DLSMSISG----------INETPLHSFMGHTNV--KNFVG-LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred eCCCCccc----------cCCcceEEEcCCCCC--eeEEE-EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 98753110 011345677888765 77777 8999999999999999999997665433221
Q ss_pred -----cccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 314 -----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 314 -----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999986
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=268.89 Aligned_cols=333 Identities=17% Similarity=0.225 Sum_probs=272.7
Q ss_pred eccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC-CcEEEEEcc
Q 013644 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD-GQVRLGQIF 89 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~ 89 (439)
......|+|.+|++.-+.||+|=..|...+|.+.....++.. .-...+|..++|+. .|++|+.|+.. |++.||+..
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L-Sis~~~I~t~~~N~--tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL-SISDQKILTVSFNS--TGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe-ecccceeeEEEecc--cCCEEEEcCCccceEEEEEee
Confidence 334478999999999999999999999999999887766553 44557899999998 89999998774 899999998
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
+...+ ...++|...+++++++|||+ ++++|+.||.|++||...+-+..++.. |...|+.+.|+..+
T Consensus 339 sEsYV--lKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFte-----------Hts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 339 SESYV--LKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTE-----------HTSGVTAVQFTARG 404 (893)
T ss_pred cccee--eeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEecc-----------CCCceEEEEEEecC
Confidence 76665 55789999999999999998 788999999999999999988888876 77889999999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C-CeEEEEEccCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-ELVYLFEKNMGL 247 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~ 247 (439)
+.+++++.||+|+.||+...... +........+..+++..|.|.++++|+ | -.|++|+++++
T Consensus 405 -~~llssSLDGtVRAwDlkRYrNf--------------RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG- 468 (893)
T KOG0291|consen 405 -NVLLSSSLDGTVRAWDLKRYRNF--------------RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG- 468 (893)
T ss_pred -CEEEEeecCCeEEeeeeccccee--------------eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-
Confidence 89999999999999999887633 333344456678999999999999987 4 48999999999
Q ss_pred CCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc-eeEeecccccceEEEeec
Q 013644 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPH 326 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s 326 (439)
+.+..+.||.++ |.+++ |+|++..|++++.|.+|++||+-... .+.++. +...+..++|+
T Consensus 469 ---------------qllDiLsGHEgP--Vs~l~-f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 469 ---------------QLLDILSGHEGP--VSGLS-FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred ---------------eeeehhcCCCCc--ceeeE-EccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEc
Confidence 788999999987 99999 89999999999999999999976543 334443 56789999999
Q ss_pred CCCcEEEEEecCCeEEEeccCCCCCC-CCC---------Cch----------hhhhhhhccccCcceEEEeCCCcEEEEE
Q 013644 327 PHIPMFATCGIEKTVKLWAPMPTDFP-PLP---------DNA----------EKIMKANKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 327 ~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~---------~~~----------~~~~~~~~~~~~~~~~~~~s~dg~v~~w 386 (439)
|+|+-||++..||.|.+||....... .+. ... .........+.++..+++++....+.++
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999999999999998644321 111 011 1112222345577788888888889999
Q ss_pred Eecccceee
Q 013644 387 RLQRRQTLA 395 (439)
Q Consensus 387 ~~~~~~~~~ 395 (439)
++.++-.++
T Consensus 610 ~v~~~vllk 618 (893)
T KOG0291|consen 610 DVPEGVLLK 618 (893)
T ss_pred ECchhheee
Confidence 998887665
No 34
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-37 Score=239.55 Aligned_cols=303 Identities=22% Similarity=0.399 Sum_probs=251.2
Q ss_pred CcccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-
Q 013644 1 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA- 79 (439)
Q Consensus 1 ~~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~- 79 (439)
|++|++.+.|+.-.+.|+++.|+++|.+|++++.|.+++|||..+++++..+ ..++-.+..++|.. ....++.++.
T Consensus 1 l~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth--~~~~~i~sStk 77 (311)
T KOG1446|consen 1 LRSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTH--HSNTVIHSSTK 77 (311)
T ss_pred CcccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEec--CCceEEEccCC
Confidence 5678899999988899999999999999999999999999999999887765 56666788888887 6666666665
Q ss_pred -CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 80 -DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 80 -dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
|.+|+..++.+++.+ +.+.||...|++++.+|-+. .+++++.|++|++||++..++...+...
T Consensus 78 ~d~tIryLsl~dNkyl--RYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------- 141 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYL--RYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS------------- 141 (311)
T ss_pred CCCceEEEEeecCceE--EEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC-------------
Confidence 889999999988877 66999999999999999987 6779999999999999988887776532
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
.-...+|+|+| -++|++.....|++||++... ..|...+... .+.....+.+.|+|+|+++..+. .+.
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~d-------kgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFD-------KGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccC-------CCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 23568999987 888888888899999999864 2344444322 24567899999999999887775 889
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc-c
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-D 316 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h 316 (439)
+++.|.-.| .....+.++.+...+..-++|+||++++++|+.||+|.+|+++++..+..+.+ +
T Consensus 211 ~~~lDAf~G----------------~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 211 IYLLDAFDG----------------TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred EEEEEccCC----------------cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 999999887 56677777776654554455999999999999999999999999999999998 6
Q ss_pred ccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 317 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 317 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
..++.++.|+|.-.++++++ ..+.+|-+...+.
T Consensus 275 ~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 275 GGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL 307 (311)
T ss_pred CCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence 78999999999877777764 5899998765443
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-39 Score=255.19 Aligned_cols=286 Identities=13% Similarity=0.221 Sum_probs=244.2
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
..+.+|..+|+.+-|+| +-..+++++.|++|++||..+++.. ..+.+|...+..++|+..|+ ++++++.|-.+++
T Consensus 102 ~~l~g~r~~vt~v~~hp--~~~~v~~as~d~tikv~D~~tg~~e--~~LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHP--SEALVVSASEDATIKVFDTETGELE--RSLRGHTDSVFDISFDASGK-YLATCSSDLSAKL 176 (406)
T ss_pred hhhhccccceeeeeecc--CceEEEEecCCceEEEEEccchhhh--hhhhccccceeEEEEecCcc-EEEecCCccchhh
Confidence 34568999999999999 8999999999999999999998875 66999999999999999998 6889999999999
Q ss_pred EEccCC-CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 131 FDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 131 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
||..+. ++++.... |...|.+++|-|.| .++++++.|.+|+.|++.++-.++
T Consensus 177 Wd~~~~~~c~ks~~g-----------h~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~--------------- 229 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIG-----------HEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVK--------------- 229 (406)
T ss_pred eeHHHHHHHHHHhcC-----------cccceeeEEEEecC-CeeeecccccceeEEecccceeEE---------------
Confidence 999873 33333332 66779999999987 899999999999999999986432
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC---
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--- 285 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~--- 285 (439)
.+.+|...+..+..+.||.++++++ |.++++|-+.+. .+...+..|... +.+++| -|
T Consensus 230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~ 290 (406)
T KOG0295|consen 230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESS 290 (406)
T ss_pred eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-ccccc
Confidence 2367788999999999999999997 999999999887 566778888876 666663 22
Q ss_pred ------------CCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-C
Q 013644 286 ------------NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-P 352 (439)
Q Consensus 286 ------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~ 352 (439)
.++++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+++++||+++++. .
T Consensus 291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred CcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 236999999999999999999999999999999999999999999999999999999999988765 6
Q ss_pred CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 353 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
.+..|..-+.... ++....++++++-|.++++|.-
T Consensus 371 ~~~ah~hfvt~lD-fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEHFVTSLD-FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcceeEEEe-cCCCCceEEeccccceeeeeec
Confidence 6666665555444 5556669999999999999963
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-38 Score=244.49 Aligned_cols=283 Identities=19% Similarity=0.313 Sum_probs=243.0
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
.+.+|++.|+.+.|+| +|.+|++|+.|..|.+|++.. .+.....+.+|++.|..+.|.++++ .+++++.|.+|+.|
T Consensus 42 ~l~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGS-HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECC--CCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCC-EEEEecCCceEEEE
Confidence 4579999999999999 999999999999999999754 3334456889999999999999998 46799999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
|+++++..+.+.. |..-++++.-...|..++.+|+.|+++++||+++...++.
T Consensus 118 D~~tG~~~rk~k~-----------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t---------------- 170 (338)
T KOG0265|consen 118 DAETGKRIRKHKG-----------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT---------------- 170 (338)
T ss_pred ecccceeeehhcc-----------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----------------
Confidence 9999999888765 6777899887777888999999999999999998664322
Q ss_pred cCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 212 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
.....+++++.|...+..+.++. |+.|++||++.+ .....+.+|... |+.+. .+|+|.++
T Consensus 171 ~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~----------------d~~~~lsGh~Dt--It~ls-ls~~gs~l 231 (338)
T KOG0265|consen 171 FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN----------------DGLYTLSGHADT--ITGLS-LSRYGSFL 231 (338)
T ss_pred cccceeEEEEEecccccceeeccccCceeeeccccC----------------cceEEeecccCc--eeeEE-eccCCCcc
Confidence 22366799999999998888887 999999999877 677899999986 99999 89999999
Q ss_pred EEeCCCCeEEEEecCCC----ceeEeeccccc----ceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhh
Q 013644 291 MSGSDCGHLFIWKKKGG----KLVRLMVGDRH----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI 361 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~----~~~~~~~~h~~----~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~ 361 (439)
.+-+.|.++++||++.. +++..+.+|.. ....++|+|+++.+.+|+.|..+.+||...... ..+++|...|
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsv 311 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSV 311 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeE
Confidence 99999999999997643 45788887653 456789999999999999999999999988554 8899999999
Q ss_pred hhhhccccCcceEEEeCCCcEEEE
Q 013644 362 MKANKQGREDHSRITLTPDVIMHV 385 (439)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~dg~v~~ 385 (439)
.... +++....+.+++.|.++++
T Consensus 312 n~~~-Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 312 NEVD-FHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEee-ecCCCcEEEEeccCceeEe
Confidence 8877 5666678889999988875
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.3e-40 Score=269.37 Aligned_cols=290 Identities=18% Similarity=0.247 Sum_probs=244.0
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
...+.+|+..|+++.|.|. .+.+|++++.|+.|+||++...+ ...+.+.+|..+|..++|+++|.. +++++.|+.|+
T Consensus 207 ~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~-fLS~sfD~~lK 283 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTS-FLSASFDRFLK 283 (503)
T ss_pred eeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCe-eeeeecceeee
Confidence 3446899999999999994 67889999999999999998732 234679999999999999999985 56999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
+||+++|++...+.. ...++|+.|+|++.+.|++|+.|+.|+.||+++++.++
T Consensus 284 lwDtETG~~~~~f~~------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq--------------- 336 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHL------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ--------------- 336 (503)
T ss_pred eeccccceEEEEEec------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---------------
Confidence 999999999888864 44579999999998999999999999999999987432
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
....|-+.|..+.|-++|+.+++++ |+.+++|+...+. ...+.......++.++. .+|++.
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-----------------~ik~i~~~~~hsmP~~~-~~P~~~ 398 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-----------------PIKNIADPEMHTMPCLT-LHPNGK 398 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-----------------cchhhcchhhccCccee-cCCCCC
Confidence 2367888999999999999888887 8999999988762 12222222223467777 899999
Q ss_pred eEEEeCCCCeEEEEecCCC---ceeEeecccc--cceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhh
Q 013644 289 YVMSGSDCGHLFIWKKKGG---KLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM 362 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~ 362 (439)
++++-+.|+.|.+|.+... .....+.+|. +.-..+.|||||.+|++|+.||.+.+||..+.++ ..+..|...++
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 9999999999999986543 3345677886 4567899999999999999999999999988776 77888888888
Q ss_pred hhhccccCcceEEEeCCCcEEEEEE
Q 013644 363 KANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
...|.+..+..+++++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 8888777889999999999999995
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=256.15 Aligned_cols=275 Identities=15% Similarity=0.289 Sum_probs=232.3
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
....|+|+.+ |+..+++|..|++|+|||..+-... ..+.+|++.|.|+.|... ++++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~--~~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECL--KILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe----cchhhhcccccCceEEeccccHHHH--HhhhcCCCcEEeeeccce---EEEecCCCceEEEEeccC
Confidence 4467999998 7789999999999999999776665 558999999999998653 888999999999999999
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
++++..+.. |...|..+.|+. .++++++.|.++.+||+.... ....+..+.+|.
T Consensus 267 ge~l~tlih-----------HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHr 320 (499)
T KOG0281|consen 267 GEPLNTLIH-----------HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHR 320 (499)
T ss_pred CchhhHHhh-----------hcceeEEEEEeC---CEEEEecCCceeEEEeccCch------------HHHHHHHHhhhh
Confidence 999888765 677899999985 699999999999999998633 224556778999
Q ss_pred ccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC
Q 013644 216 IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~ 294 (439)
..|+.+.|+. +++++++ |.+|++|++.+. +.++++.+|... |.|+.+ .|+++++|+
T Consensus 321 AaVNvVdfd~--kyIVsASgDRTikvW~~st~----------------efvRtl~gHkRG--IAClQY---r~rlvVSGS 377 (499)
T KOG0281|consen 321 AAVNVVDFDD--KYIVSASGDRTIKVWSTSTC----------------EFVRTLNGHKRG--IACLQY---RDRLVVSGS 377 (499)
T ss_pred hheeeecccc--ceEEEecCCceEEEEeccce----------------eeehhhhccccc--ceehhc---cCeEEEecC
Confidence 9999999874 4888886 999999999988 788999999877 777664 899999999
Q ss_pred CCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCC----------CCCchhhhhhh
Q 013644 295 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----------LPDNAEKIMKA 364 (439)
Q Consensus 295 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~----------~~~~~~~~~~~ 364 (439)
.|.+|++||+..|.+++.++||..-|.++.| |.+.+++|+.||+|++||+..+..+. +..|.+++...
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 9999999999999999999999999999999 56689999999999999997765432 22344454333
Q ss_pred hccccCcceEEEeCCCcEEEEEEecccce
Q 013644 365 NKQGREDHSRITLTPDVIMHVLRLQRRQT 393 (439)
Q Consensus 365 ~~~~~~~~~~~~~s~dg~v~~w~~~~~~~ 393 (439)
. .+...+++.+.|.+|.+|++.++-.
T Consensus 456 Q---FD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 456 Q---FDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred e---ecceEEEeccCCCeEEEEEcCCCCc
Confidence 2 2455889999999999999977643
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-37 Score=244.79 Aligned_cols=299 Identities=15% Similarity=0.218 Sum_probs=245.1
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
-.....+.||++.|+++.|+.+|.+||||+-+|.|+||...++.....+. ..-+.+.-+.|+| .+..|+.|+.||.+
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp--~a~illAG~~DGsv 172 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHP--RAHILLAGSTDGSV 172 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecc--cccEEEeecCCCcE
Confidence 34567899999999999999999999999999999999999998776654 4556788899999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
-+|.+.++... +.+.+|..++++=.|.|+|++ ++++..||+|++|++.++++...+.... .....++
T Consensus 173 Wmw~ip~~~~~--kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e----------~~~~~~~ 239 (399)
T KOG0296|consen 173 WMWQIPSQALC--KVMSGHNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAE----------GLELPCI 239 (399)
T ss_pred EEEECCCccee--eEecCCCCCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccc----------cCcCCcc
Confidence 99999876444 568899999999999999995 6699999999999999998877765432 2335677
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc---CCCEEEEec-CCeEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSELLISYN-DELVY 239 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~-d~~i~ 239 (439)
.++..+ ..++.|..++.+++-+..+++.+.......+ .+...+...+.++.+.| .=.+.|+++ ||+|.
T Consensus 240 ~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~-------~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~ 311 (399)
T KOG0296|consen 240 SLNLAG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVP-------ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA 311 (399)
T ss_pred cccccc-ceeEeccCCccEEEEccccceEEEecCCCCc-------cccccchhhhhhhhhcccccccchhhcccccceEE
Confidence 777765 7889999999999998888876554332111 11123344455555544 446778887 99999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccc
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 319 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 319 (439)
|||+... .++..-.|... |+.+. |-+ ..+|++++.+|.|+.||.++|+++..+.||...
T Consensus 312 iyD~a~~-----------------~~R~~c~he~~--V~~l~-w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 312 IYDLAAS-----------------TLRHICEHEDG--VTKLK-WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred EEecccc-----------------hhheeccCCCc--eEEEE-EcC-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 9999765 33444455554 99999 455 789999999999999999999999999999999
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
|.+++++|+.++++|+|.|++.+||+..
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999864
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.7e-39 Score=241.34 Aligned_cols=293 Identities=17% Similarity=0.255 Sum_probs=246.3
Q ss_pred ceeeeeeccccceEEEEECC---CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 5 NLCGKLHGHKGCVNAVEFNS---TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
+.-.+-.||+.+|-.++||| +|-+|++++.||.-.+-+-+++.-+-++ .+|++.|+...... +....++++.|-
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~--na~~aasaaadf 81 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNK--NATRAASAAADF 81 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCc--hhhhhhhhcccc
Confidence 34456789999999999986 8889999999999999888888877775 79999999999987 777888999999
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
+-++||.-++..+. .+ .|..-|..++|+.|.++ |++|+.+..+++||++..+....- ...|.+.|.
T Consensus 82 takvw~a~tgdelh--sf-~hkhivk~~af~~ds~~-lltgg~ekllrvfdln~p~App~E----------~~ghtg~Ir 147 (334)
T KOG0278|consen 82 TAKVWDAVTGDELH--SF-EHKHIVKAVAFSQDSNY-LLTGGQEKLLRVFDLNRPKAPPKE----------ISGHTGGIR 147 (334)
T ss_pred hhhhhhhhhhhhhh--hh-hhhheeeeEEecccchh-hhccchHHHhhhhhccCCCCCchh----------hcCCCCcce
Confidence 99999998887763 34 38899999999999986 559999999999999876532211 112778899
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
.+.|.... +.+++++.|++||+||.+++..++.+ ....+|+++.++++|+++..+..+.|..|
T Consensus 148 ~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL----------------~~~s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 148 TVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSL----------------EFNSPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred eEEEeccC-ceEEeeccCCceEEEEeccCcEEEEE----------------ecCCCCcceeeccCCCEEEEecCceeEEe
Confidence 99998866 78888899999999999998754332 22567899999999999999999999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee-cccccce
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVV 320 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v 320 (439)
|..+- ..++.++ .+..|.+.. .+|+...+++|++|..++.||..+++.+..+ ++|.++|
T Consensus 211 daksf----------------~~lKs~k---~P~nV~SAS-L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV 270 (334)
T KOG0278|consen 211 DAKSF----------------GLLKSYK---MPCNVESAS-LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV 270 (334)
T ss_pred ccccc----------------cceeecc---Ccccccccc-ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCce
Confidence 98754 3333333 333477777 8999999999999999999999999999886 8999999
Q ss_pred EEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.|+.|+|+|...|+|+.||+|++|....++.
T Consensus 271 hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 271 HCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999876654
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=263.02 Aligned_cols=290 Identities=21% Similarity=0.314 Sum_probs=253.6
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+++..++|..|+..|.++.|+|...+++++-..|.|.||+.++...+..+ .-...+|.+..|.+ ..+++++|+.|..
T Consensus 2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfia--RknWiv~GsDD~~ 78 (794)
T KOG0276|consen 2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIA--RKNWIVTGSDDMQ 78 (794)
T ss_pred cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeee--ccceEEEecCCce
Confidence 56677888889999999999999999999999999999999998766554 66778999999999 8999999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
|+||+..+.+.+ ..+..|.+-|++++.+|..++ +++++.|.+|++||.+.+- +.+.+.. |...|.
T Consensus 79 IrVfnynt~ekV--~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeG-----------H~HyVM 144 (794)
T KOG0276|consen 79 IRVFNYNTGEKV--KTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEG-----------HEHYVM 144 (794)
T ss_pred EEEEecccceee--EEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcC-----------cceEEE
Confidence 999999998887 568899999999999999995 5699999999999998753 3344433 778899
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEec-CCeE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYN-DELV 238 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~-d~~i 238 (439)
+++|+|.+.+.|++++-|++|++|.+.+.. +...+.+|...|+++.+-+.| -+|++++ |..+
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPH---------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCC---------------CceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 999999999999999999999999998643 233447999999999998876 5888886 8899
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
++||.++. .+++++.||.+. |..+. |+|.-..+++|++||+++||+..+-++..++.-.-.
T Consensus 210 KvWDyQtk----------------~CV~TLeGHt~N--vs~v~-fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 210 KVWDYQTK----------------SCVQTLEGHTNN--VSFVF-FHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred EEeecchH----------------HHHHHhhccccc--ceEEE-ecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 99999877 799999999987 77777 899999999999999999999999988888876678
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEE
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
.|+|++-.+.++.++.|.+.|.|.+
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999998888888887776643
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=247.06 Aligned_cols=286 Identities=21% Similarity=0.327 Sum_probs=241.9
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
.+.+.+|.+.|.|+++.| .+.+|++|+.|++++|||+.+++.. ..+.+|...|..+++++-.+| +++++.|+.|+
T Consensus 144 ~rVi~gHlgWVr~vavdP--~n~wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vavS~rHpY-lFs~gedk~VK 218 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAVSKRHPY-LFSAGEDKQVK 218 (460)
T ss_pred hhhhhhccceEEEEeeCC--CceeEEecCCCceeEEEEcccCeEE--EeecchhheeeeeeecccCce-EEEecCCCeeE
Confidence 345679999999999999 8999999999999999999998876 558999999999999999996 55999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
.||++.++.++.+.. |-..|.|++.+|.- ..|++|+.|..+++||+++.. ...
T Consensus 219 CwDLe~nkvIR~YhG-----------HlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~---------------~V~ 271 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHG-----------HLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRA---------------SVH 271 (460)
T ss_pred EEechhhhhHHHhcc-----------ccceeEEEeccccc-eeEEecCCcceEEEeeecccc---------------eEE
Confidence 999999999888876 67789999999987 899999999999999999864 234
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
.+.+|..+|.++.+.|-.-.+++++ |++|++||+..+ +....+..|... +.+++ .+|...
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag----------------kt~~tlt~hkks--vral~-lhP~e~ 332 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG----------------KTMITLTHHKKS--VRALC-LHPKEN 332 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC----------------ceeEeeecccce--eeEEe-cCCchh
Confidence 5589999999999998777777776 999999999988 566677777764 89999 899999
Q ss_pred eEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCC-----CCchh--h
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-----PDNAE--K 360 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~-----~~~~~--~ 360 (439)
.+|+++.| .|+-|++..|..+..+.+|...|++++...|+ ++++|++.|.+.+||..++-. +.. ++... .
T Consensus 333 ~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa 410 (460)
T KOG0285|consen 333 LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA 410 (460)
T ss_pred hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence 99999886 68999999999999999999999999998775 778999999999999987643 222 22211 1
Q ss_pred hhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 361 IMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 361 ~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
-+....+......++++..|.+|++|.-
T Consensus 411 gI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 411 GIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred ceeEEeecccCceEEeccCCcceEEEec
Confidence 2223334556778999999999999974
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-37 Score=270.18 Aligned_cols=336 Identities=15% Similarity=0.233 Sum_probs=275.0
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
.|...+..|..++|+|...+++++-..|.|++||++-+..+.++ ..|.++|..++|+| ...++++|+.|-.|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~--~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHP--TQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecC--CCCeEEecCCccEEEEEec
Confidence 45566788999999999999999999999999999988777775 79999999999999 9999999999999999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
.+.+++ .++.+|-+-|..+.|++.-+ .+++++.|.+|+||+..+++++..+.. |...|.|..|+|.
T Consensus 81 k~rrcl--ftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltG-----------HnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 81 KTRRCL--FTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTG-----------HNHYVMCAQFHPT 146 (1202)
T ss_pred ccceeh--hhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEec-----------CceEEEeeccCCc
Confidence 887776 66999999999999999998 567999999999999999999999987 7778999999997
Q ss_pred CCcEEEEeecCceEEEEeCcCCcccCCCCCC-----------CCc---ccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 169 NPNYFAVGGSDEYARVYDIRKCHWYSPISSD-----------TPV---DTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 169 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
. .++++++-|.+||+||+...+.....+.. ..+ .......++.+|...|+-++|.|.-.++++|+
T Consensus 147 E-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 147 E-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred c-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 6 79999999999999998765433322210 000 01224556789999999999999999999997
Q ss_pred -CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 235 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 235 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
|..|++|.+.... .-.+.+..+|.+. |.++. |+|..+++++.++|++|++||+...+.+.++
T Consensus 226 DDRqVKlWrmnetK--------------aWEvDtcrgH~nn--Vssvl-fhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETK--------------AWEVDTCRGHYNN--VSSVL-FHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CcceeeEEEecccc--------------ceeehhhhcccCC--cceEE-ecCccceeEecCCCccEEEEecccccceeee
Confidence 8899999986541 1245667889887 99999 8999999999999999999999999999999
Q ss_pred cccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccce
Q 013644 314 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 393 (439)
Q Consensus 314 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~ 393 (439)
+-..+..+.++-+|..+++|+| .|+-+.+|.++..++... + ++..+.-.. |..++.+|+.+.+.
T Consensus 289 rrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErpa~~---------v-----~~n~LfYvk-d~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERPAYA---------V-----NGNGLFYVK-DRFIRSYDLRTQKD 352 (1202)
T ss_pred eccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCceEE---------E-----cCCEEEEEc-cceEEeeecccccc
Confidence 8777899999999999988766 566777888875443111 0 111222222 67778888777544
Q ss_pred ee
Q 013644 394 LA 395 (439)
Q Consensus 394 ~~ 395 (439)
..
T Consensus 353 ~~ 354 (1202)
T KOG0292|consen 353 TA 354 (1202)
T ss_pred ce
Confidence 33
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-38 Score=252.24 Aligned_cols=276 Identities=20% Similarity=0.361 Sum_probs=231.1
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
....|+|+++. ...+++|..|.+|+|||..+..+... +.+|++.|.|+.| +...|++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~-L~GHtGSVLCLqy----d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI-LTGHTGSVLCLQY----DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHh-hhcCCCcEEeeec----cceEEEecCCCceEEEEeccCCc
Confidence 34679999985 45699999999999999888766544 6899999999999 56799999999999999999998
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
.+ ..+.+|.+.|..+.|+.. ++++++.|.++.+||+.....+..... ..+|...|+.+.|+. ++
T Consensus 269 ~l--~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrV--------LvGHrAaVNvVdfd~---ky 332 (499)
T KOG0281|consen 269 PL--NTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRV--------LVGHRAAVNVVDFDD---KY 332 (499)
T ss_pred hh--hHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHH--------Hhhhhhheeeecccc---ce
Confidence 87 448899999999999864 678999999999999987653322111 112778899999975 69
Q ss_pred EEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCC
Q 013644 173 FAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 251 (439)
+++++.|.+|++|++.+++.+ ..+.+|...|.|+.+ .++++++|+ |.+|++||+..+
T Consensus 333 IVsASgDRTikvW~~st~efv---------------Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G----- 390 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFV---------------RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG----- 390 (499)
T ss_pred EEEecCCceEEEEeccceeee---------------hhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-----
Confidence 999999999999999998743 334788888888876 578999986 999999999988
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc---------eeEeecccccceEE
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---------LVRLMVGDRHVVNQ 322 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~ 322 (439)
.+++.+.||..- |.++.| +.+.+++|+.||+|++||+..+. ++..+..|.+.|..
T Consensus 391 -----------~cLRvLeGHEeL--vRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 391 -----------ACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred -----------HHHHHHhchHHh--hhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 788999999986 899885 78999999999999999988763 34555678899999
Q ss_pred EeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 323 LEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 323 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+.| |...+++++.|.+|.|||+..+..
T Consensus 455 LQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 455 LQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred Eee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 999 556899999999999999876544
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=235.32 Aligned_cols=288 Identities=20% Similarity=0.268 Sum_probs=233.9
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
.|+||+.+++-+.|+.+|.+|.+++.|.+..||-..+++.+-++ .+|++.|+|+.... +..++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~--~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDW--DSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecC--CcceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999998888877764 89999999999998 9999999999999999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEe----CCCCcEEEEEccCC-------CceeeEEeeccCCCCCCCCce
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSC----GEDGFVQHFDLRSD-------SATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~----~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~ 157 (439)
++++++.... ...+|..+.|+++|..++++. +..+.|.++|++.. ++...+.. +.
T Consensus 82 ~tGk~la~~k---~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-----------~~ 147 (327)
T KOG0643|consen 82 ETGKQLATWK---TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-----------PD 147 (327)
T ss_pred CCCcEEEEee---cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-----------Cc
Confidence 9999875533 457899999999998655443 34578999999843 33333332 45
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 236 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~ 236 (439)
..++.+.|.|-+ ..|++|..+|.|.+||+++++. .......|...|+.++++++..++++++ |.
T Consensus 148 skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~--------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 148 SKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE--------------LVDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred cceeeeeecccC-CEEEEecCCCcEEEEEcccCce--------------eeechhhhccccccccccCCcceEEecccCc
Confidence 668999999987 8999999999999999999762 2233366788999999999999999998 99
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEE--------------EE
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF--------------IW 302 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~--------------iw 302 (439)
+-++||+.+- ..++++.... ++++.+ ++|...+++.|+.....- +|
T Consensus 213 takl~D~~tl----------------~v~Kty~te~---PvN~aa-isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 213 TAKLVDVRTL----------------EVLKTYTTER---PVNTAA-ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred cceeeeccce----------------eeEEEeeecc---ccccee-cccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 9999999765 4555555443 488888 899888888776533222 22
Q ss_pred ecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 303 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 303 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
++-..+.+..+++|-++|++++|||+|+..++|+.||.|++...+.
T Consensus 273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 2222345667789999999999999999999999999999986643
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-38 Score=254.74 Aligned_cols=281 Identities=18% Similarity=0.261 Sum_probs=237.6
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
-+..|..+.|.| +|+.|++|+..|.+.+|+...-.. ...+..|..+|+++.|++++. .+++|..+|.|++|+...
T Consensus 95 vkc~V~~v~WtP--eGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTP--EGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcC--CCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccch
Confidence 345899999999 999999999999999999733222 234678999999999999998 567999999999999876
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
..... +..+ |...|.+++|+|.+ ..|++++.||+|+|||....+ ....+.+|.
T Consensus 170 nnVk~-~~ah----------h~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~k---------------ee~vL~GHg 222 (464)
T KOG0284|consen 170 NNVKI-IQAH----------HAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPK---------------EERVLRGHG 222 (464)
T ss_pred hhhHH-hhHh----------hhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCc---------------hhheeccCC
Confidence 54332 2221 45789999999966 899999999999999998754 233448999
Q ss_pred ccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC
Q 013644 216 IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~ 294 (439)
-.|.++.|+|...++++++ |..|++||.+++ .++.++.+|.+. |..+. |++++++|++++
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg----------------~cl~tlh~HKnt--Vl~~~-f~~n~N~Llt~s 283 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG----------------SCLATLHGHKNT--VLAVK-FNPNGNWLLTGS 283 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCc----------------chhhhhhhccce--EEEEE-EcCCCCeeEEcc
Confidence 9999999999999999998 889999999998 688888888875 99999 899999999999
Q ss_pred CCCeEEEEecCCCceeEeecccccceEEEeecCCC-cEEEEEecCCeEEEeccCCCCC-CCC-CCchhhhhhhhccccCc
Q 013644 295 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIMKANKQGRED 371 (439)
Q Consensus 295 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 371 (439)
.|..++++|+++.+.+..+++|...|++++|+|-. .+|.+|+.||.|..|.+...++ ..+ ..|...+.... +++-+
T Consensus 284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~-~hPlG 362 (464)
T KOG0284|consen 284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLA-YHPLG 362 (464)
T ss_pred CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeee-ccccc
Confidence 99999999999999999999999999999999964 4899999999999999974444 333 35666666655 67778
Q ss_pred ceEEEeCCCcEEEEEEe
Q 013644 372 HSRITLTPDVIMHVLRL 388 (439)
Q Consensus 372 ~~~~~~s~dg~v~~w~~ 388 (439)
..+.+++.|.++++|.-
T Consensus 363 hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTR 379 (464)
T ss_pred eeEeecCCCcceeeecc
Confidence 89999999999999964
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-37 Score=243.28 Aligned_cols=287 Identities=21% Similarity=0.321 Sum_probs=240.7
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee-------eecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS-------YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
|...-+-|..|+|||+||++|+.||.|-+|++.+++.... .+.-+..+|.|+.|+. |...|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 3456788999999999999999999999999988863221 2345778999999999 999999999999999
Q ss_pred EEEcccCceeeeEEec-CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 85 LGQIFEDGRMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
+|.++++.++. .+. .|+..|+|+.|+.|+.. +++++.|.++++--++++++++.+.. |...|+..
T Consensus 289 vWri~tG~ClR--rFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfrG-----------HsSyvn~a 354 (508)
T KOG0275|consen 289 VWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFRG-----------HSSYVNEA 354 (508)
T ss_pred EEEEecchHHH--HhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHHhcC-----------ccccccce
Confidence 99999998874 344 79999999999999986 55999999999999999999888876 77889999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLF 241 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~ 241 (439)
.|.++| +.+++++.||+|++|+..+.+++..... .+...+|+++..-|.+ ..+++++ .+++++.
T Consensus 355 ~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~-------------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 355 TFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKP-------------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred EEcCCC-CeEEEecCCccEEEecCcchhhhhhccC-------------CCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 999987 8999999999999999999886544322 2346678888877765 5666665 8899999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeC-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccce
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 320 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 320 (439)
++... .++.+.. ........+.+ .||.|.++++.++|+.++.|...+|++...+.-|...|
T Consensus 421 n~qGQ-----------------vVrsfsSGkREgGdFi~~~-lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 421 NMQGQ-----------------VVRSFSSGKREGGDFINAI-LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred eccce-----------------EEeeeccCCccCCceEEEE-ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 98653 4455543 22222344444 79999999999999999999999999999999999999
Q ss_pred EEEeecCCCcEEEEEecCCeEEEecc
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
..++-+|..++||+-+.||.+++|..
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred cccccCcccchhhhhcccchhhhcCC
Confidence 99999999999999999999999963
No 48
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-36 Score=264.27 Aligned_cols=208 Identities=23% Similarity=0.369 Sum_probs=189.6
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
..++|.||.++|..+.|+|+.++|+++|.|+++|+|.+.+...+..+ .+|..+|+.+.|+| .|-++||++.|++.++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P--~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAP--RGYYFATASHDQTARL 519 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecC--CceEEEecCCCceeee
Confidence 45679999999999999999999999999999999999999887775 69999999999999 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|........ +.+.+|...|.|+.|+|+..| +++|+.|.+|++||+.++..++.+.. |..+|.+++|
T Consensus 520 Ws~d~~~Pl--RifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF~G-----------H~~~V~al~~ 585 (707)
T KOG0263|consen 520 WSTDHNKPL--RIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIFTG-----------HKGPVTALAF 585 (707)
T ss_pred eecccCCch--hhhcccccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEecC-----------CCCceEEEEE
Confidence 998775555 558899999999999999985 78999999999999999999999865 7889999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
+|.| .+|++|+.||.|.+||+.+++.+ ..+.+|.+.|.++.|+.+|..||+++ |..|++||+.
T Consensus 586 Sp~G-r~LaSg~ed~~I~iWDl~~~~~v---------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 586 SPCG-RYLASGDEDGLIKIWDLANGSLV---------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCC-ceEeecccCCcEEEEEcCCCcch---------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9987 99999999999999999997643 23367899999999999999999997 9999999987
Q ss_pred CC
Q 013644 245 MG 246 (439)
Q Consensus 245 ~~ 246 (439)
..
T Consensus 650 ~~ 651 (707)
T KOG0263|consen 650 KV 651 (707)
T ss_pred hh
Confidence 64
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-36 Score=259.13 Aligned_cols=293 Identities=16% Similarity=0.308 Sum_probs=250.6
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
.++.||...|.+++++.+...+++|+. +.|++|+..+.+++.++- .+.+.+..|.| .++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~---~~y~l~~~Fvp--gd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT---CGYILASKFVP--GDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec---cccEEEEEecC--CCceEEEeccCCceEEEE
Confidence 357799999999999999988888865 689999999999888763 23889999999 999999999999999999
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-----ceeeEEeeccCCCCCCCCceeeeEE
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-----ATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
+.+...+.. +..|.+.|++++.+||++. +++|+.|.+|++||..-.. ..+.+..... ....-...|.|
T Consensus 441 laS~~l~Et--i~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~----rtLel~ddvL~ 513 (888)
T KOG0306|consen 441 LASASLVET--IRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT----RTLELEDDVLC 513 (888)
T ss_pred eehhhhhhh--hhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccc----eEEeccccEEE
Confidence 988777644 6789999999999999996 6699999999999976321 1111111100 00012456999
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+.++|++ .+|+++--|.++++|-+.+.+. .-.+.+|.-+|.++.++|+++++++|+ |.+|++|
T Consensus 514 v~~Spdg-k~LaVsLLdnTVkVyflDtlKF---------------flsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 514 VSVSPDG-KLLAVSLLDNTVKVYFLDTLKF---------------FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEEcCCC-cEEEEEeccCeEEEEEecceee---------------eeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 9999987 8999999999999999998653 233479999999999999999999998 9999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceE
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 321 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 321 (439)
-++-| .+.+.+-+|... |.++. |-|...++++++.|+.|+-||-...+.++.+.+|...|+
T Consensus 578 GLdFG----------------DCHKS~fAHdDS--vm~V~-F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~ 638 (888)
T KOG0306|consen 578 GLDFG----------------DCHKSFFAHDDS--VMSVQ-FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW 638 (888)
T ss_pred ccccc----------------hhhhhhhcccCc--eeEEE-EcccceeEEEecCcceEEeechhhhhhheeeccchheee
Confidence 99887 678888899876 99999 788999999999999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
|++.+|+|.+++++|.|.+|++|.-..
T Consensus 639 cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 639 CLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999755
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=221.12 Aligned_cols=291 Identities=16% Similarity=0.196 Sum_probs=233.1
Q ss_pred eeeecCCcccEEEEEEeecCC-CcEEEEecCCCcEEEEEcccCce-eeeEE-ecCCCCceEEEEEccCCCcEEEEeCCCC
Q 013644 50 FSYLSGHLDNIFQTRIMPFTD-DRKIITSSADGQVRLGQIFEDGR-MDTKR-LGKHQGRVYKLAVEPGSPYIIYSCGEDG 126 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~-~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg 126 (439)
.+.+.+|.+.+..++|+| . |..|++++.|..|++|+...+.. ..... -.+|+..|++++|+|.|+ +|++++.|.
T Consensus 7 ~~~~~gh~~r~W~~awhp--~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~ 83 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHP--GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA 83 (312)
T ss_pred EEeecCCCCcEEEEEecc--CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence 345689999999999999 5 77999999999999999974322 22222 247999999999999998 688999999
Q ss_pred cEEEEEccCCCce--eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 127 FVQHFDLRSDSAT--RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 127 ~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
++.||.-..+... ..+.. |...|.+++|+++| ++||+++.|..|-||.+.... .
T Consensus 84 t~~Iw~k~~~efecv~~lEG-----------HEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~dedd------------E 139 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEG-----------HENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDD------------E 139 (312)
T ss_pred eEEEeecCCCceeEEeeeec-----------cccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCC------------c
Confidence 9999987655433 33322 77889999999987 899999999999999988543 3
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
+....++..|...|..+.|+|...+|++++ |++|++|.-..+ ....+.+++.+|.+ +|.++. |
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-------------ddW~c~~tl~g~~~--TVW~~~-F 203 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-------------DDWECVQTLDGHEN--TVWSLA-F 203 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC-------------CCeeEEEEecCccc--eEEEEE-e
Confidence 345566789999999999999999999998 999999987632 23467889999987 599999 8
Q ss_pred CCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC----C----CCCC
Q 013644 284 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----F----PPLP 355 (439)
Q Consensus 284 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~----~~~~ 355 (439)
++.|..|++++.|++++||...+.- -..|...+..+.|. ...|++++.|+.|+++.-...- . ..-.
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 9999999999999999999865221 12367889999997 4589999999999999865321 1 1122
Q ss_pred CchhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 356 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
.|...+..+.+.+..+..+++++.||.+++|.+.
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4556666666666567899999999999999875
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-36 Score=234.30 Aligned_cols=296 Identities=17% Similarity=0.315 Sum_probs=237.8
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCC-----------------CcceeeeecCCcccEEEEEEeecCC
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD-----------------RREKFSYLSGHLDNIFQTRIMPFTD 70 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~ 70 (439)
..+..|++++.+.+|+|||.++|||+.|-.|+|.|++. ..++.+.+-.|...|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--R 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--h
Confidence 45778999999999999999999999999999999851 1245556678999999999999 9
Q ss_pred CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 71 DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 71 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
...|++++.|++|+++|+................+|.++.|+|.|.+ ++.|..-.++++||+++-++...-.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan------- 255 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN------- 255 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC-------
Confidence 99999999999999999975543333333446689999999999984 6689999999999999876532221
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCC-CccEEEEEEccCCCE
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSEL 229 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 229 (439)
+...|...|+++.+++.+ ++.++|+.||.|++||--+++ |...+-.+| ...|.+..|..+|++
T Consensus 256 -Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 256 -PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred -cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccCCeE
Confidence 222388899999999987 899999999999999988776 334444444 456899999999999
Q ss_pred EEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcc--e-eeeEEeeCCCCceEEEeCC-CCeEEEEec
Q 013644 230 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ--T-VKGVNFFGPNDEYVMSGSD-CGHLFIWKK 304 (439)
Q Consensus 230 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-v~~~~~~s~~~~~l~~~~~-dg~i~iwd~ 304 (439)
+.+++ |..+++|++.++ +.++.+.|..... . -+... |.....|++.-.+ .+.+.-||.
T Consensus 320 iLsSG~DS~vkLWEi~t~----------------R~l~~YtGAg~tgrq~~rtqAv-FNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTG----------------RMLKEYTGAGTTGRQKHRTQAV-FNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred EeecCCcceeeeeeecCC----------------ceEEEEecCCcccchhhhhhhh-hcCccceEEccccccCceeeccc
Confidence 99887 999999999988 6677777653211 1 12223 6677778777655 478999999
Q ss_pred CCCceeEee-cccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 305 KGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 305 ~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
+++..+..+ .+|.+.+..+.-||.+.-+.+|+.|-.+|+|--
T Consensus 383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 988766555 489999999999999999999999999999964
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-36 Score=244.41 Aligned_cols=293 Identities=13% Similarity=0.238 Sum_probs=240.9
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
.+++..|.+.|+-+.|++ +|++||+++.|.+..+|.+..... ...+++.+|..+|..+.|+||.++ |++|+.|..+
T Consensus 217 ~qil~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdry-LlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRY-LLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCe-EEecCchHhe
Confidence 445679999999999999 999999999999999999865443 334678899999999999999996 5588999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
.+||+.++.....+... +...+.+.+|.|++ ..+++|+.|+.+..||+...... .+
T Consensus 294 ~lwDv~tgd~~~~y~~~----------~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~----------~W--- 349 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSG----------LGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILG----------NW--- 349 (519)
T ss_pred eeccCCcchhhhhcccC----------cCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhh----------cc---
Confidence 99999999887766432 24568999999998 88999999999999999864311 01
Q ss_pred ccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
.......|.+++.++||++++... |..|++|+..+. ........+. .+++++ .|.++
T Consensus 350 --~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~----------------~dr~lise~~---~its~~-iS~d~ 407 (519)
T KOG0293|consen 350 --EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR----------------VDRGLISEEQ---PITSFS-ISKDG 407 (519)
T ss_pred --cccccceeEEEEEcCCCcEEEEEecccceeeechhhh----------------hhhccccccC---ceeEEE-EcCCC
Confidence 012235689999999998877665 999999998764 1222233332 388888 89999
Q ss_pred ceEEEeCCCCeEEEEecCCCceeEeeccccc--ceEEEeec-CCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhh
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK 363 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~ 363 (439)
+++++.-.+..+++||++..+.++.+.||.. .|..-+|. -+..++++|+.|+.|+||+..++++ ..+.+|...+..
T Consensus 408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 9999999999999999999999999999975 34444553 3447999999999999999998887 889999999999
Q ss_pred hhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 364 ANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 364 ~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+.|.+.++..++++|.||+|++|.....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999987643
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=263.46 Aligned_cols=288 Identities=19% Similarity=0.311 Sum_probs=237.0
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc-
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL- 133 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~- 133 (439)
.+...|.++.|+| +|..+++++.++.+++|+....+......+.+|...|..++|+|+++ ++++++.|++|++||+
T Consensus 157 ~~~~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcC--CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEeecc
Confidence 3478899999999 99999999999999999996555222345688999999999999998 6789999999999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
..+..++.+.. |...|++++|+|++ +++++|+.|++|++||+++++. ...+.+
T Consensus 234 ~~~~~~~~l~g-----------H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~---------------~~~l~~ 286 (456)
T KOG0266|consen 234 DDGRNLKTLKG-----------HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC---------------VRKLKG 286 (456)
T ss_pred CCCeEEEEecC-----------CCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---------------EEeeec
Confidence 44466677765 78889999999998 9999999999999999998653 334488
Q ss_pred CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 214 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
|...|++++|++++.+|++++ |+.|++||+.++.. .....+.++.....+..+. |+|++.++++
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~-fsp~~~~ll~ 351 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK--------------LCLKLLSGAENSAPVTSVQ-FSPNGKYLLS 351 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce--------------eeeecccCCCCCCceeEEE-ECCCCcEEEE
Confidence 999999999999999999998 99999999998720 0234555555433477777 8999999999
Q ss_pred eCCCCeEEEEecCCCceeEeecccccc---eEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCc-hhhhhhhhcc
Q 013644 293 GSDCGHLFIWKKKGGKLVRLMVGDRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN-AEKIMKANKQ 367 (439)
Q Consensus 293 ~~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~-~~~~~~~~~~ 367 (439)
++.|+.+++||+..+..+..+.+|... +.+...++.++++++|+.|+.|.+|++.++.. ..+.+| ...+...+ .
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~-~ 430 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLS-S 430 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccc-c
Confidence 999999999999999999999999864 44555678999999999999999999987554 777777 44444444 4
Q ss_pred ccCcceEEEeC--CCcEEEEEEe
Q 013644 368 GREDHSRITLT--PDVIMHVLRL 388 (439)
Q Consensus 368 ~~~~~~~~~~s--~dg~v~~w~~ 388 (439)
+.....+++.+ .|+.+++|..
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecC
Confidence 55566666666 7999999974
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-35 Score=221.48 Aligned_cols=286 Identities=20% Similarity=0.225 Sum_probs=236.5
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee-eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS-YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
+.+++|...|.+|+|+.+|..|++|+.|+++++|++........ ...+|.+.|-.++|.|. ..+++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEE
Confidence 56889999999999999999999999999999999987643322 24689999999999984 77899999999999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
|++.+++... +....+. .-+.|+|+|.+ ++++..|..|.+.|.++.+...... ....++.++|+
T Consensus 93 d~r~~k~~~~--i~~~~en-i~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~------------~~~e~ne~~w~ 156 (313)
T KOG1407|consen 93 DIRSGKCTAR--IETKGEN-INITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQ------------FKFEVNEISWN 156 (313)
T ss_pred EeccCcEEEE--eeccCcc-eEEEEcCCCCE-EEEecCcccEEEEEecccceeehhc------------ccceeeeeeec
Confidence 9999887644 3323333 45789999985 6689999999999999877655443 23457888998
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccC
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNM 245 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 245 (439)
.++ ++|+.....|.|.|......+ +...+.+|.....|+.|+|+|++||+|+ |..+.+||+..
T Consensus 157 ~~n-d~Fflt~GlG~v~ILsypsLk---------------pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 157 NSN-DLFFLTNGLGCVEILSYPSLK---------------PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred CCC-CEEEEecCCceEEEEeccccc---------------cccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 766 677777777999999887644 3344488999999999999999999997 99999999875
Q ss_pred CCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
- -+.+.+..+.-+ |..+. ||.+|++||+|++|..|-|=++++|..+..++ +.++...++|
T Consensus 221 L----------------iC~R~isRldwp--VRTlS-FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAW 280 (313)
T KOG1407|consen 221 L----------------ICERCISRLDWP--VRTLS-FSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAW 280 (313)
T ss_pred h----------------hhheeeccccCc--eEEEE-eccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEe
Confidence 4 566777777765 99999 89999999999999999999999999999887 6788999999
Q ss_pred cCCCcEEEEEecC---------CeEEEecc
Q 013644 326 HPHIPMFATCGIE---------KTVKLWAP 346 (439)
Q Consensus 326 s~~~~~l~s~~~d---------g~i~iw~~ 346 (439)
+|...+||-++.| |.++++-+
T Consensus 281 HPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 281 HPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred cCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999999988765 46666654
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-36 Score=262.54 Aligned_cols=261 Identities=21% Similarity=0.353 Sum_probs=209.7
Q ss_pred ccceeeeee-ccccceEEEEECCCCCEEEEecCCCeEEEEeCCC--------------------------------Cc--
Q 013644 3 RINLCGKLH-GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD--------------------------------RR-- 47 (439)
Q Consensus 3 ~~~~~~~l~-~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~--------------------------------~~-- 47 (439)
.+...+.++ +|.+.|.++.||+||+|||+||.|+.|+||.+.. ..
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 355667788 8999999999999999999999999999998754 00
Q ss_pred -------------------------ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCC
Q 013644 48 -------------------------EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKH 102 (439)
Q Consensus 48 -------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 102 (439)
.....+.+|.+.|..+.|+ .+++|++++.|.+|+||++....++.. + .|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~--F-~H 408 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV--F-SH 408 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccc---cCCeeEeccccccEEeecCCCcceeeE--E-ec
Confidence 0111257899999999999 688999999999999999987777643 3 49
Q ss_pred CCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceE
Q 013644 103 QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA 182 (439)
Q Consensus 103 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 182 (439)
.+-|+|++|+|-+..+|++|+-|+.|+||++...+......+ ..-|++++|.|+| +..++|+.+|.+
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl------------~~lITAvcy~PdG-k~avIGt~~G~C 475 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL------------RDLITAVCYSPDG-KGAVIGTFNGYC 475 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh------------hhhheeEEeccCC-ceEEEEEeccEE
Confidence 999999999997777889999999999999998876655543 3459999999997 899999999999
Q ss_pred EEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEecCCeEEEEEccCCCCCCCCCCCccccc
Q 013644 183 RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
++|+....+....... ............|+.+.|.|.. ++|++..|..|+|||.+..
T Consensus 476 ~fY~t~~lk~~~~~~I-------~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-------------- 534 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHI-------RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-------------- 534 (712)
T ss_pred EEEEccCCeEEEeeeE-------eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch--------------
Confidence 9999988764332111 0000001122389999999765 4888889999999999665
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
..+..|++..+...-.... |+.||++|+++++|..|++|++..
T Consensus 535 --~lv~KfKG~~n~~SQ~~As-fs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 535 --DLVHKFKGFRNTSSQISAS-FSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred --hhhhhhcccccCCcceeee-EccCCCEEEEeecCceEEEEeCCC
Confidence 5778888887766656666 788999999999999999999743
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.8e-35 Score=244.70 Aligned_cols=302 Identities=16% Similarity=0.180 Sum_probs=236.6
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce----eeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK----FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
-..|++|+..|+++++.|.|-.|++|+.|-+|++||+...... ..+.......|.+++|++ .+..|++.+....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--TGDQILVVSGSAQ 237 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC--CCCeEEEEecCcc
Confidence 3468899999999999999999999999999999999765322 222234456899999999 8999998888889
Q ss_pred EEEEEcccCceee----------eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCC
Q 013644 83 VRLGQIFEDGRMD----------TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSK 152 (439)
Q Consensus 83 i~iw~~~~~~~~~----------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 152 (439)
.+|+|-....... ....++|...++|.+|+|..+..|++++.||++++||+...+....+......
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~---- 313 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA---- 313 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC----
Confidence 9999875333221 12346799999999999999989999999999999999876543333222111
Q ss_pred CCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCc--cEEEEEEccCCCEE
Q 013644 153 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI--HITGLAYSNTSELL 230 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l 230 (439)
......++.++|+|++ .+||+|..||.|.+|+..+.... ....+..+|.. .|+++.|+++|++|
T Consensus 314 -~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~------------p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 314 -GGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR------------PVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred -CCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc------------cceEeeeccCCCCceeEEEeccccchh
Confidence 1245678999999998 78999999999999998653310 11223356666 89999999999999
Q ss_pred EEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC------CCeEEEEe
Q 013644 231 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWK 303 (439)
Q Consensus 231 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~------dg~i~iwd 303 (439)
++-+ |+.+++||++... +++....+-...-.-+.++ |||+.++|++|+. .|.+.+||
T Consensus 380 lSRg~D~tLKvWDLrq~k---------------kpL~~~tgL~t~~~~tdc~-FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFK---------------KPLNVRTGLPTPFPGTDCC-FSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred hhccCCCceeeeeccccc---------------cchhhhcCCCccCCCCccc-cCCCceEEEecccccCCCCCceEEEEe
Confidence 9986 9999999998763 3444444444443456666 8999999999964 47899999
Q ss_pred cCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEe
Q 013644 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
..+.+.+..+.-....|..+.|+|.-+.|..++.||++++|
T Consensus 444 ~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 444 RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99999888887777889999999998889999999999986
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-34 Score=247.59 Aligned_cols=283 Identities=18% Similarity=0.336 Sum_probs=235.3
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+.+|..+|.+++|+| ++++|++++.+|.+++|++.+++.. ..+..|...+..+.|+|+++ .+++++.++.|++|+
T Consensus 5 ~~~h~~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCC-EEEEEcCCCeEEEEE
Confidence 468999999999999 9999999999999999999876644 45677889999999999996 577999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
+..++....+.. |...+.++.|+|++ .++++++.++.+++||+++++.. ....
T Consensus 80 ~~~~~~~~~~~~-----------~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~ 132 (289)
T cd00200 80 LETGECVRTLTG-----------HTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL---------------TTLR 132 (289)
T ss_pred cCcccceEEEec-----------cCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE---------------EEec
Confidence 998766655543 45579999999985 78888888999999999865421 1224
Q ss_pred CCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE
Q 013644 213 KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~ 291 (439)
.|...+.++.|+|++.+++++. ++.+++||+..+ +....+..|... +.++. ++|+++.++
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----------------~~~~~~~~~~~~--i~~~~-~~~~~~~l~ 193 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----------------KCVATLTGHTGE--VNSVA-FSPDGEKLL 193 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc----------------ccceeEecCccc--cceEE-ECCCcCEEE
Confidence 5677899999999999999998 999999999765 455566666544 88898 899999999
Q ss_pred EeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhccccC
Q 013644 292 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRE 370 (439)
Q Consensus 292 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~ 370 (439)
+++.++.|++||+.+++.+..+..|...+.+++|+|++.++++++.||.|++|++..++. ..+..+...+.... +..+
T Consensus 194 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 272 (289)
T cd00200 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA-WSPD 272 (289)
T ss_pred EecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEE-ECCC
Confidence 999999999999999999999988999999999999988999888899999999986554 45555555555544 3445
Q ss_pred cceEEEeCCCcEEEEEE
Q 013644 371 DHSRITLTPDVIMHVLR 387 (439)
Q Consensus 371 ~~~~~~~s~dg~v~~w~ 387 (439)
+..+++++.||.+++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 67899999999999995
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-35 Score=249.19 Aligned_cols=292 Identities=15% Similarity=0.239 Sum_probs=241.8
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+..+...|.++.++| ...+++++-.+|.|.||+.++...+ ..+.-..-+|++..|-+..+ .+++|+.|..|++|+
T Consensus 9 ~~~rSdRVKsVd~HP--tePw~la~LynG~V~IWnyetqtmV--ksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHP--TEPWILAALYNGDVQIWNYETQTMV--KSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCC--CCceEEEeeecCeeEEEecccceee--eeeeecccchhhheeeeccc-eEEEecCCceEEEEe
Confidence 456889999999999 9999999999999999999887766 44555678999999998776 688999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
..+++.+..+.. |...|.+++.+|.. .++++++.|-.|++||....= ...+.+.
T Consensus 84 ynt~ekV~~FeA-----------H~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w--------------a~~qtfe 137 (794)
T KOG0276|consen 84 YNTGEKVKTFEA-----------HSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW--------------ACEQTFE 137 (794)
T ss_pred cccceeeEEeec-----------cccceeeeeecCCC-CeEEecCCccEEEEeeccCce--------------eeeeEEc
Confidence 999999988876 78889999999987 799999999999999998643 4455669
Q ss_pred CCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCce
Q 013644 213 KNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEY 289 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~ 289 (439)
+|...|.+++|+|.. ..+++++ |++|++|.+... .+..++.+|... |+++.|++. |..|
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~----------------~~nfTl~gHekG--VN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP----------------HPNFTLEGHEKG--VNCVDYYTGGDKPY 199 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------CCceeeeccccC--cceEEeccCCCcce
Confidence 999999999999964 7888888 999999999877 677899999987 999997653 3459
Q ss_pred EEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhccc
Q 013644 290 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQG 368 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~ 368 (439)
|++|++|..|+|||.++..|++++.||...|+.+.|+|.-++++||+.||++|||+..+-++ ..+.-..+++..+.. .
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~-~ 278 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA-H 278 (794)
T ss_pred EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEee-c
Confidence 99999999999999999999999999999999999999999999999999999999988766 444444555555542 2
Q ss_pred cCcceEEEeCCCcEEEEEEecccceee
Q 013644 369 REDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 369 ~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
..+..++.+. |.-..+.++.++++..
T Consensus 279 k~~~~i~vG~-Deg~i~v~lgreeP~v 304 (794)
T KOG0276|consen 279 KGDGKIAVGF-DEGSVTVKLGREEPAV 304 (794)
T ss_pred CCCCeEEEec-cCCcEEEEccCCCCce
Confidence 2233333444 4444555666665543
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.5e-35 Score=233.88 Aligned_cols=294 Identities=19% Similarity=0.257 Sum_probs=231.9
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeec-CCCcEEEEecCCCcEEEEEcccC
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF-TDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
|.+-|.++... +++|+||+.||.+++||.... .... ..+|.++|.+++|.-. +....|++++.|.++++|.++.+
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~~-~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIKT-IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEEE-EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 77888888887 789999999999999997554 4444 4799999999888651 12235999999999999998776
Q ss_pred ceeee--EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEee---------------ccCCCCCCC
Q 013644 92 GRMDT--KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCS---------------SFSENSKQP 154 (439)
Q Consensus 92 ~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~ 154 (439)
..... ..-.+|...|.+++..+++. .+++|+.|..|.+|+..+... ..+... ...+.....
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCceEEec
Confidence 54322 22349999999999999998 578999999999999332211 111000 001111124
Q ss_pred CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 155 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
+|..+|.++.|++. ..+++++.|.+|+.||+.++.....+ .....+.++.++|..++|++++
T Consensus 258 GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~----------------~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTL----------------TTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred ccccceeeEEEcCC--CceEeecccceEEEEEeecccceeee----------------ecCcceeEeecccccceeeecC
Confidence 68899999999984 68999999999999999998743322 2255689999999999999997
Q ss_pred -CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEEeCCCCeEEEEecCCCc-eeE
Q 013644 235 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGK-LVR 311 (439)
Q Consensus 235 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~ 311 (439)
|..+++||.+++... -..+.+.+|.+. |.++. |+|... .|++|+.|+++++||+++.+ ++.
T Consensus 320 sdr~irl~DPR~~~gs-------------~v~~s~~gH~nw--Vssvk-wsp~~~~~~~S~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGS-------------VVSQSLIGHKNW--VSSVK-WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred CCCceeecCCCCCCCc-------------eeEEeeecchhh--hhhee-cCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence 999999999987433 355788999986 99999 677654 67899999999999999887 899
Q ss_pred eecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 312 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 312 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.+.+|...|.++.|. ++.+|++||.|.+|+|+.-.
T Consensus 384 dI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 384 DIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999996 46799999999999998753
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.5e-34 Score=274.81 Aligned_cols=304 Identities=14% Similarity=0.137 Sum_probs=232.2
Q ss_pred CCeEEEEeCCCCcceeee----ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc----e--eeeEEecCCCC
Q 013644 35 DKLVIFWDWKDRREKFSY----LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG----R--MDTKRLGKHQG 104 (439)
Q Consensus 35 dg~i~iw~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~----~--~~~~~~~~~~~ 104 (439)
+|.+++|+.......... +..|.+.|.+++|+| ++++|++|+.|+.|+||++.... . .....+. +..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRS 533 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccC
Confidence 677888887765432221 235899999999999 99999999999999999975321 0 1112233 346
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
.+.+++|+|.....|++++.||+|++||+.+++.+..+.. |...|.+++|+|.++.+|++|+.|+.|++
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-----------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i 602 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-----------HEKRVWSIDYSSADPTLLASGSDDGSVKL 602 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-----------CCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence 7999999986555788999999999999998876665543 67789999999855589999999999999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc-cCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKR 262 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (439)
||++++..+. .+ . +...+.++.|+ +++.+|++++ |+.|++||++...
T Consensus 603 Wd~~~~~~~~--------------~~-~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------------- 651 (793)
T PLN00181 603 WSINQGVSIG--------------TI-K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------------- 651 (793)
T ss_pred EECCCCcEEE--------------EE-e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---------------
Confidence 9998765321 11 2 23468899995 5688999887 9999999997641
Q ss_pred ccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC------CceeEeecccccceEEEeecCCCcEEEEEe
Q 013644 263 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 263 ~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 336 (439)
.....+.+|... |.++. |. ++.+|++++.|+.|++||+.. .+++..+.+|...+.+++|+|++++|++|+
T Consensus 652 ~~~~~~~~h~~~--V~~v~-f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 652 LPLCTMIGHSKT--VSYVR-FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred ccceEecCCCCC--EEEEE-Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 134566677765 88998 54 788999999999999999874 357788999999999999999999999999
Q ss_pred cCCeEEEeccCCCCCC--------------CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 337 IEKTVKLWAPMPTDFP--------------PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 337 ~dg~i~iw~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
.|+.|++|+....... ....+...+..+. +..++..+++++.||.|++|++
T Consensus 728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~-ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC-WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE-EcCCCCeEEEecCCCcEEEEec
Confidence 9999999997543211 0111222233333 4567778999999999999986
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.9e-36 Score=241.53 Aligned_cols=286 Identities=24% Similarity=0.340 Sum_probs=237.1
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .....+.+..++|+++.|.+ ++.++++++.|+.+++
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~--~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS--DNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC--CCceEEeecCCCceee
Confidence 45678899999999999998899999999999999987765 23445678889999999999 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|++.+.+.. .++.+|++.|+++.|...... +++|+.|.+|++||+....+.+.+.. ...++.++.
T Consensus 246 Wnvd~~r~~--~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~------------~S~cnDI~~ 310 (459)
T KOG0288|consen 246 WNVDSLRLR--HTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLP------------GSQCNDIVC 310 (459)
T ss_pred eeccchhhh--hhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccc------------cccccceEe
Confidence 999877766 558899999999999988764 78999999999999999777665542 334666776
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
++ ..+++|..|+.|++||+++...... ..-.+.|+++..++++..+.+++ |..+.+.|++
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~s----------------v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSADKTRS----------------VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred cc---eeeeecccccceEEEeccCCceeeE----------------eecCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 63 6799999999999999998763221 12245899999999997777776 9999999998
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCC--CcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc--ce
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VV 320 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v 320 (439)
+. .....+.... ...-.+.+. |||++.|+++|+.||.|+||++.++++...+..... .|
T Consensus 372 t~----------------eI~~~~sA~g~k~asDwtrvv-fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI 434 (459)
T KOG0288|consen 372 TK----------------EIRQTFSAEGFKCASDWTRVV-FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAI 434 (459)
T ss_pred cc----------------cEEEEeeccccccccccceeE-ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcce
Confidence 76 3444444322 122267777 899999999999999999999999999988876554 59
Q ss_pred EEEeecCCCcEEEEEecCCeEEEec
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
++++|+|.|..|++++.++.+.+|.
T Consensus 435 ~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 435 TSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999994
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-34 Score=214.78 Aligned_cols=258 Identities=19% Similarity=0.271 Sum_probs=215.7
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
...+..++++|..+.|+- +|++.++++.|.+|++|+...+..+ +.+.+|...|..++.+.|+. -|++|+.|..+.
T Consensus 10 ~~~l~~~qgaV~avryN~--dGnY~ltcGsdrtvrLWNp~rg~li--ktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNV--DGNYCLTCGSDRTVRLWNPLRGALI--KTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEcc--CCCEEEEcCCCceEEeeccccccee--eeecCCCceeeecccccccc-ccccCCCCceEE
Confidence 445678999999999999 9999999999999999999877766 66899999999999999987 488999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
+||+.+++..+.+.. |...|+.+.|+.+. ..+++|+.|..+++||.++.. +.|.+
T Consensus 85 vwDV~TGkv~Rr~rg-----------H~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s-------------~ePiQ 139 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRG-----------HLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS-------------FEPIQ 139 (307)
T ss_pred EEEcccCeeeeeccc-----------ccceeeEEEecCcc-eEEEeccccceeEEEEcccCC-------------CCccc
Confidence 999999999998876 78899999999976 899999999999999999855 24555
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
++......|.++..+ +..+++|+ ||+++.||++.+ .....+-+| +|+++. |+++++
T Consensus 140 ildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G----------------~l~sDy~g~----pit~vs-~s~d~n 196 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG----------------TLSSDYFGH----PITSVS-FSKDGN 196 (307)
T ss_pred hhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc----------------eeehhhcCC----cceeEE-ecCCCC
Confidence 556677788888775 44566666 999999999987 233333333 499999 899999
Q ss_pred eEEEeCCCCeEEEEecCCCceeEeecccccceE--EEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhh
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN--QLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEK 360 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~ 360 (439)
..++++.|+++++.|-.+|+++..+++|...-. ..+++.....+++|+.||.|.+||+..... ..++.+...
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 999999999999999999999999999986433 445666667899999999999999977765 444434333
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=233.57 Aligned_cols=285 Identities=16% Similarity=0.239 Sum_probs=231.0
Q ss_pred eeeeeccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+... +..|.+.|..+++. ...+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-f~AH~G~V~Gi~v~----~~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-FKAHEGLVRGICVT----QTSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-eecccCceeeEEec----ccceEEecCCcceee
Confidence 45689999999999999976 7899999999999999998877666 58999999999996 378899999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|.+... ....+. ....+..+.-+..+. .++|+|.+ |.|||.....++..+.- ....|.++.|
T Consensus 134 wk~~~~---p~~til-g~s~~~gIdh~~~~~-~FaTcGe~--i~IWD~~R~~Pv~smsw-----------G~Dti~svkf 195 (433)
T KOG0268|consen 134 WKIDGP---PLHTIL-GKSVYLGIDHHRKNS-VFATCGEQ--IDIWDEQRDNPVSSMSW-----------GADSISSVKF 195 (433)
T ss_pred eeccCC---cceeee-ccccccccccccccc-cccccCce--eeecccccCCccceeec-----------CCCceeEEec
Confidence 998652 223333 335566777666665 68888764 99999998888777754 2445899999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
+|-...+|++++.|+.|.+||++....+..... ....+.|+|+|++-.+++++ |..++.||++
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----------------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVIL----------------TMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeee----------------eccccceecCccccceeeccccccceehhhh
Confidence 999888999999999999999998774332211 33457899999887777776 9999999998
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-ccceEEE
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQL 323 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~ 323 (439)
.-. .++..+.+|... |..+. |||.|+-+++|+.|.+|+||....+.....+... -..|.++
T Consensus 260 ~l~---------------~p~~v~~dhvsA--V~dVd-fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 260 NLS---------------RPLNVHKDHVSA--VMDVD-FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred hhc---------------ccchhhccccee--EEEec-cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEE
Confidence 653 566778888875 99999 8999999999999999999999877654443221 2479999
Q ss_pred eecCCCcEEEEEecCCeEEEeccCC
Q 013644 324 EPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
.||.|.+++++||+|+.|++|....
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEeccccEEEecCCCcceeeeecch
Confidence 9999999999999999999998753
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-34 Score=215.74 Aligned_cols=283 Identities=19% Similarity=0.259 Sum_probs=228.0
Q ss_pred EEEEECC--CCCEEEE-e-----cCCCeEEEEeCCCCcceeeee-cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 18 NAVEFNS--TGDFLVS-G-----SDDKLVIFWDWKDRREKFSYL-SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 18 ~~~~~s~--~~~~l~t-~-----~~dg~i~iw~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
.++.||| ++++.+. + ...|.+.|-++...+.+.... -.-...+..++|++. ..+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 6789999 4544322 2 235889999986444333221 245678999999983 6678889999999999996
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
. ....++..++.|...|.++.|++..++.+++++.|++|++|+...++.++++.. |...|...+|+|.
T Consensus 91 ~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-----------h~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 91 T-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-----------HNSCIYQAAFSPH 158 (311)
T ss_pred C-CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-----------CccEEEEEecCCC
Confidence 4 334456778899999999999998888888999999999999999988888765 6788999999999
Q ss_pred CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCC
Q 013644 169 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMG 246 (439)
Q Consensus 169 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~ 246 (439)
.++++++++.|+.+++||++... . ...+..|...|.++.|+.-. .+|++++ |+.|+.||+++-
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~g--------------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPG--------------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCC--------------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 99999999999999999988632 1 12247788999999999755 6777876 999999999875
Q ss_pred CCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-ceEEEeCCCCeEEEEecCCC-ceeEeecccccceEEEe
Q 013644 247 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLE 324 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~ 324 (439)
. .++..+.+|.-. |+.+. +||.. ..|++++.|-+++|||...+ ..+.+...|..-|..+.
T Consensus 224 r---------------~pl~eL~gh~~A--VRkvk-~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 224 R---------------TPLFELNGHGLA--VRKVK-FSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLD 285 (311)
T ss_pred c---------------ccceeecCCceE--EEEEe-cCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccc
Confidence 3 356677888765 99999 67755 68899999999999998754 45566677888999999
Q ss_pred ecCC-CcEEEEEecCCeEEEecc
Q 013644 325 PHPH-IPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 325 ~s~~-~~~l~s~~~dg~i~iw~~ 346 (439)
||+. ..++|+++.|+.+.||++
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 9985 458999999999999986
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-34 Score=252.57 Aligned_cols=304 Identities=16% Similarity=0.259 Sum_probs=245.7
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+......|..++|+| ...+++++-..|.|++||.+-+..+ ..+..|.++|..++|+|+++ ++++||.|-.|++|+
T Consensus 5 fEskSsRvKglsFHP--~rPwILtslHsG~IQlWDYRM~tli--~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHP--KRPWILTSLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCC--CCCEEEEeecCceeeeehhhhhhHH--hhhhccCCccceeeecCCCC-eEEecCCccEEEEEe
Confidence 345567899999999 9999999999999999999876665 55889999999999999998 799999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
.++.+++..+.. |-..|..+.|++.- .++++++.|.+|+||+..+.+++ ..+.
T Consensus 80 Yk~rrclftL~G-----------HlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~i---------------avlt 132 (1202)
T KOG0292|consen 80 YKTRRCLFTLLG-----------HLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCI---------------AVLT 132 (1202)
T ss_pred cccceehhhhcc-----------ccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceE---------------EEEe
Confidence 999998887765 77889999999976 79999999999999999987743 3448
Q ss_pred CCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccc-----------c--cccccceeEeCCCCcceee
Q 013644 213 KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPED-----------L--QKREEPQVYSGHRNSQTVK 278 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~v~ 278 (439)
+|...|.|..|+|...++++++ |.+|++||+..-..........++ + ...-....+.||... |+
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG--VN 210 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG--VN 210 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc--cc
Confidence 9999999999999999999999 999999998754322222111111 0 122234567788876 88
Q ss_pred eEEeeCCCCceEEEeCCCCeEEEEecCCCc--eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCC
Q 013644 279 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP 355 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~ 355 (439)
-++ |+|.-.+|++|++|..|++|.+...+ .+.+..+|.+.|.++-|+|...++++.|.|++|+|||++.++. ..++
T Consensus 211 waA-fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 211 WAA-FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eEE-ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 888 89999999999999999999987554 3567789999999999999999999999999999999987765 5554
Q ss_pred CchhhhhhhhccccCcceEEEeCCCcEEEEEEecccce
Q 013644 356 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 393 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~ 393 (439)
....+..... .+....+.+.+.|+-+.|+.+++.+.
T Consensus 290 rendRFW~la--ahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 290 RENDRFWILA--AHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred ccCCeEEEEE--ecCCcceeeeecCCceEEEEEcccCc
Confidence 3334333322 12233667777788899999986654
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=230.77 Aligned_cols=285 Identities=16% Similarity=0.167 Sum_probs=235.5
Q ss_pred ccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 14 KGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 14 ~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
.++|++++|+|... -+|+++. -.+.||+..+...... +......+.++.|-. ||.+|++|...|.|+|+|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-~srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r- 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-FSRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR- 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-HHhhccceeEEEeec--CCeEEEccCCcCcEEEeccccH-
Confidence 37899999999543 3555544 4699999887765444 356778999999998 9999999999999999996542
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
.....+.+|+.+|..+.|+|+++.++++|+.|+.+++||+.+......+.. |...|.|.+|+|.++.+
T Consensus 101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-----------htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-----------HTDYVRCGDISPANDHI 168 (487)
T ss_pred -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-----------CcceeEeeccccCCCeE
Confidence 223568899999999999999999999999999999999998874223322 78899999999998889
Q ss_pred EEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCC
Q 013644 173 FAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPL 252 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~ 252 (439)
+++|+.||.|++||++... .......|..+|..+.+.|.|.++++++...+++||+.++.
T Consensus 169 vvtGsYDg~vrl~DtR~~~---------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~----- 228 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLT---------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG----- 228 (487)
T ss_pred EEecCCCceEEEEEeccCC---------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc-----
Confidence 9999999999999999742 12223568899999999999999999999999999998662
Q ss_pred CCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEE
Q 013644 253 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 332 (439)
+.+..+..|.. +|+|++ +..++..|++|+-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.+
T Consensus 229 ----------qll~~~~~H~K--tVTcL~-l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 229 ----------QLLTSMFNHNK--TVTCLR-LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred ----------eehhhhhcccc--eEEEEE-eecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceE
Confidence 33344444555 499999 67799999999999999999999899988887 46899999999999999
Q ss_pred EEEecCCeEEEeccCCC
Q 013644 333 ATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 333 ~s~~~dg~i~iw~~~~~ 349 (439)
+.|..+|.+.+=+....
T Consensus 295 viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEecccceeeeehhhcc
Confidence 99999999887654433
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=212.52 Aligned_cols=249 Identities=18% Similarity=0.223 Sum_probs=213.9
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+.+|...+.+++|+. +|..|++|+.|+++.+|++...+........+|.+.|..++|+|..+.+|++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcc--cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 468999999999999 999999999999999999987766555567889999999999999888999999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
++.+++...+.. ...-.-+.|+|++ .++++++.|..|.+.|.++.+.... .
T Consensus 94 ~r~~k~~~~i~~------------~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~----------------~ 144 (313)
T KOG1407|consen 94 IRSGKCTARIET------------KGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNE----------------E 144 (313)
T ss_pred eccCcEEEEeec------------cCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeeh----------------h
Confidence 999998877753 2334558899987 8999999999999999998663321 2
Q ss_pred CCCccEEEEEEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE
Q 013644 213 KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~ 291 (439)
.....+.-++|+.++.++... +.|.|.|.....- ++++.+++|... ..|+. |+|+|+|+|
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL----------------kpv~si~AH~sn--CicI~-f~p~GryfA 205 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL----------------KPVQSIKAHPSN--CICIE-FDPDGRYFA 205 (313)
T ss_pred cccceeeeeeecCCCCEEEEecCCceEEEEecccc----------------ccccccccCCcc--eEEEE-ECCCCceEe
Confidence 234557788888777665555 5799999886543 788899999876 88999 899999999
Q ss_pred EeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 292 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 292 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+|+.|..+.+||++..-+++.+.-+.-+|..+.||.+|++||+|+.|..|-|=+++++..
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 999999999999999999999999999999999999999999999999999988887764
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=214.27 Aligned_cols=275 Identities=14% Similarity=0.165 Sum_probs=221.2
Q ss_pred cccceEEEEECC-CCCEEEEecCCCeEEEEeCCCC-cceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 13 HKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDR-REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 13 h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
-.+.|.+|+||| ...+++.+|.|++||+|+++.. ...-+....|.++|.+++|+. +|..+++|+.|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEEccC
Confidence 457899999999 5566778999999999999873 444455668999999999999 999999999999999999998
Q ss_pred CceeeeEEecCCCCceEEEEEccCCC-cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEPGSP-YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
++. ..+..|.++|..+.|-+... .+|++|+.|.+|+.||.+...++..+.. ..+++++..-.
T Consensus 104 ~Q~---~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------------PeRvYa~Dv~~-- 166 (347)
T KOG0647|consen 104 GQV---SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------------PERVYAADVLY-- 166 (347)
T ss_pred CCe---eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec------------cceeeehhccC--
Confidence 854 45677999999999987654 3788999999999999999888877764 44577776653
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 248 (439)
.+++++..++.|.+|++++.... .......-...+++++..++....+.|+ +|.+.+..+..+..
T Consensus 167 -pm~vVata~r~i~vynL~n~~te-------------~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 167 -PMAVVATAERHIAVYNLENPPTE-------------FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred -ceeEEEecCCcEEEEEcCCCcch-------------hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 58889999999999999875421 1111123456789999999887777777 99999999887522
Q ss_pred CCCCCCCcccccccccceeEeCCCC-------cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceE
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRN-------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 321 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 321 (439)
..-..++.|.. --.|.+++ |+|.-..|++++.||++.+||-+....+.....|..+|+
T Consensus 233 --------------~~nFtFkCHR~~~~~~~~VYaVNsi~-FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpIt 297 (347)
T KOG0647|consen 233 --------------KDNFTFKCHRSTNSVNDDVYAVNSIA-FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPIT 297 (347)
T ss_pred --------------cCceeEEEeccCCCCCCceEEecceE-eecccceEEEecCCceEEEecchhhhhhhccCcCCCccc
Confidence 12234444442 12478889 899999999999999999999988888888888999999
Q ss_pred EEeecCCCcEEEEE
Q 013644 322 QLEPHPHIPMFATC 335 (439)
Q Consensus 322 ~~~~s~~~~~l~s~ 335 (439)
+.+|+.+|.++|-+
T Consensus 298 cc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 298 CCSFNRNGSIFAYA 311 (347)
T ss_pred eeEecCCCCEEEEE
Confidence 99999999987765
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=225.79 Aligned_cols=287 Identities=12% Similarity=0.189 Sum_probs=242.5
Q ss_pred cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee------EEecCCCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT------KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
.+....+.|..|+| |+++|++|+.||.|.+|+..+++.... ..+.-+..+|.|+.|+.|.. ++++|+.||.
T Consensus 210 Fg~KSh~EcA~FSP--DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGk 286 (508)
T KOG0275|consen 210 FGQKSHVECARFSP--DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGK 286 (508)
T ss_pred cccccchhheeeCC--CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCc
Confidence 35667789999999 999999999999999999987764321 12344778999999999997 7999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
|++|.++++.+++.+... |...|+|+.|+.++ ..+++++.|.++++.-+.+++.++
T Consensus 287 IKvWri~tG~ClRrFdrA----------HtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LK------------- 342 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRA----------HTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLK------------- 342 (508)
T ss_pred EEEEEEecchHHHHhhhh----------hccCeeEEEEccCc-chhhcccccceEEEeccccchhHH-------------
Confidence 999999999999887643 67789999999998 789999999999999999988432
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
.+.+|...|+...|.++|..+++++ ||+|++|+..+. ++..+++......+|.++..+..+
T Consensus 343 --EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt----------------eC~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 343 --EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT----------------ECLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred --HhcCccccccceEEcCCCCeEEEecCCccEEEecCcch----------------hhhhhccCCCCcccceeEEEcCCC
Confidence 2288999999999999999988886 999999999887 566777766666668888766777
Q ss_pred CceEEEeCCCCeEEEEecCCCceeEeeccc---ccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhh
Q 013644 287 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM 362 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~ 362 (439)
...++.+...++|+|.+++ |+.++.+..- .+...+.+.||.|.++.+.+.|+.+..+.+.++++ ..++.|...++
T Consensus 405 peh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 405 PEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI 483 (508)
T ss_pred CceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccc
Confidence 8899999999999999987 7888887632 24566778999999999999999999999988887 67777888887
Q ss_pred hhhccccCcceEEEeCCCcEEEEEE
Q 013644 363 KANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
... .++....+++.+.||.+++|.
T Consensus 484 Gl~-HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 484 GLT-HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccc-cCcccchhhhhcccchhhhcC
Confidence 765 456777899999999999995
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=211.98 Aligned_cols=253 Identities=19% Similarity=0.278 Sum_probs=207.2
Q ss_pred eeeeeeccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
..+.+.- .+.+..++|++.. +.+++++.||+++|||+.........++.|+..|.++.|++. +...+++++-|++|+
T Consensus 53 e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 53 ECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIK 130 (311)
T ss_pred EEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceE
Confidence 3444432 5779999999954 678889999999999977666666667899999999999984 677788889999999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+|+...++.+ .++.+|...|...+|+|..+.++++++.|+++++||++.......+.. |...+.++.
T Consensus 131 LW~~~r~~Sv--~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-----------h~~Eil~cd 197 (311)
T KOG0277|consen 131 LWDPNRPNSV--QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-----------HNSEILCCD 197 (311)
T ss_pred eecCCCCcce--EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-----------ccceeEeec
Confidence 9999776666 558899999999999999888999999999999999987654444544 667799999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEE
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFE 242 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d 242 (439)
|+.-+.+++++|+.|+.|+.||+++.+ .+...+.+|.-.|+.++|+|.. .+|++++ |-++++||
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r--------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLR--------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhcc--------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 999888999999999999999999866 3344558999999999999986 6788888 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
...+. ..+.+...|.. .+..+.|-..++.++|+.+.|+.++||+.
T Consensus 264 ~~~~d---------------s~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQD---------------SAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccch---------------hhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence 87542 23444555554 37888842336789999999999999984
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=219.55 Aligned_cols=283 Identities=17% Similarity=0.258 Sum_probs=238.4
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 94 (439)
..|+++...|....++||+.|..+.++|..+++.+ .++.+|...|+.+.|+| +...+++++.|..|+||........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEecc--chhheeecCCcceEEeeccccccCc
Confidence 56888888888788999999999999998887654 44689999999999999 9999999999999999998766654
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
.....|..+|+.+..+|.|.| |++++.|++..+.|++++.......... ....+++.+|+||| .+|.
T Consensus 297 --~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~---------s~v~~ts~~fHpDg-Lifg 363 (506)
T KOG0289|consen 297 --TSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDET---------SDVEYTSAAFHPDG-LIFG 363 (506)
T ss_pred --cccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeecc---------ccceeEEeeEcCCc-eEEe
Confidence 447789999999999999996 5599999999999999998877665321 24568999999998 9999
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCC
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLS 253 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 253 (439)
+|..|+.+++||+.++.. ...+.+|.++|..++|+.+|.+|+++. |+.|++||++..
T Consensus 364 tgt~d~~vkiwdlks~~~---------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl------- 421 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTN---------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL------- 421 (506)
T ss_pred ccCCCceEEEEEcCCccc---------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-------
Confidence 999999999999998652 122377999999999999999999997 778999999865
Q ss_pred CCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEe--cCCCceeEeecccccceEEEeecCCCcE
Q 013644 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK--KKGGKLVRLMVGDRHVVNQLEPHPHIPM 331 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 331 (439)
+..+++.-.... .+.++. |.+.|.+|+.++.+=+|++++ .+++.++..+..|.+..+++.|....++
T Consensus 422 ---------~n~kt~~l~~~~-~v~s~~-fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 422 ---------KNFKTIQLDEKK-EVNSLS-FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred ---------cccceeeccccc-cceeEE-EcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence 344444444332 488888 899999999998876777776 3356788888889989999999999999
Q ss_pred EEEEecCCeEEEecc
Q 013644 332 FATCGIEKTVKLWAP 346 (439)
Q Consensus 332 l~s~~~dg~i~iw~~ 346 (439)
++++|.|..++++.+
T Consensus 491 l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 491 LASTSMDAILRLYAL 505 (506)
T ss_pred EeeccchhheEEeec
Confidence 999999999988764
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.6e-32 Score=241.94 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=240.9
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
|...+.+..|. ..++++++.|++|++|+..++..+...+.+|.+.|+++++.. .+.+|++|+.|.++++||..++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCc
Confidence 56778888888 557999999999999999999888776789999999999986 68999999999999999999988
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
+. ..+.+|...|.++...+. .+++|+.|.+|++|++.++..+..+.. |..+|+++..+ + .+
T Consensus 283 C~--~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~-----------h~~~V~~v~~~--~-~~ 343 (537)
T KOG0274|consen 283 CT--HSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRG-----------HTGPVNCVQLD--E-PL 343 (537)
T ss_pred EE--EEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEecc-----------ccccEEEEEec--C-CE
Confidence 87 558899999999988664 577899999999999999998888865 67789999998 2 79
Q ss_pred EEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCC
Q 013644 173 FAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 251 (439)
+++|+.|++|++||+.+++++. .+.+|...|.++.+.+. ..+++++ |+.|++||+.+..
T Consensus 344 lvsgs~d~~v~VW~~~~~~cl~---------------sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---- 403 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKCLK---------------SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---- 403 (537)
T ss_pred EEEEecCceEEEEEhhhceeee---------------eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----
Confidence 9999999999999999877432 33779999999988877 7777776 9999999998751
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc-cccceEEEeecCCCc
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIP 330 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~ 330 (439)
++...+.+|..- +..+. ..+++|++++.|+.|++||..+++++..+.+ |...|..+++. ..
T Consensus 404 -----------~c~~tl~~h~~~--v~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~ 465 (537)
T KOG0274|consen 404 -----------KCIHTLQGHTSL--VSSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KE 465 (537)
T ss_pred -----------hhhhhhcCCccc--ccccc---cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cc
Confidence 477888888875 55544 4789999999999999999999999999998 67889999886 45
Q ss_pred EEEEEecCCeEEEeccCCCCC
Q 013644 331 MFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 331 ~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+++++.||.+++||+.+++.
T Consensus 466 ~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eEEEEecCCeeEEEecccCch
Confidence 788999999999999988776
No 73
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-31 Score=208.17 Aligned_cols=274 Identities=17% Similarity=0.197 Sum_probs=219.1
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
++.|++|.|+|.+..|+.++.||++++|++........ -.|..++.+++|. +...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~--~~~~~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK--FKHGAPLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh--eecCCceeeeecc---CCceEEEeccCceEEEEEecCCcc
Confidence 57899999999998999999999999999988754444 3788999999998 578999999999999999988765
Q ss_pred eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEE
Q 013644 94 MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYF 173 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 173 (439)
..+..|..+|.||.+++... .+++|+.|++|++||.+.......+. ....|.++.... +.|
T Consensus 88 ---~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d------------~~kkVy~~~v~g---~~L 148 (323)
T KOG1036|consen 88 ---DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFD------------QGKKVYCMDVSG---NRL 148 (323)
T ss_pred ---eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccc------------cCceEEEEeccC---CEE
Confidence 34677999999999998766 57799999999999999744443332 233688888763 789
Q ss_pred EEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCC
Q 013644 174 AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPL 252 (439)
Q Consensus 174 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 252 (439)
++|+.+..+.+||+++..... ......-+..+.++++.|++.-+++++ +|+|.+=.++.....
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~-------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--- 212 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPF-------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--- 212 (323)
T ss_pred EEeecCceEEEEEcccccchh-------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH---
Confidence 999999999999999865211 111133466799999999887777776 999988776654111
Q ss_pred CCCcccccccccceeEeCCCC-------cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee
Q 013644 253 SLSPEDLQKREEPQVYSGHRN-------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
......|+.|.. -.+|++++ |+|-.+.||+|+.||.|.+||+.+.+.+..+......|.+++|
T Consensus 213 ---------~skkyaFkCHr~~~~~~~~~yPVNai~-Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 213 ---------QSKKYAFKCHRLSEKDTEIIYPVNAIA-FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred ---------hhhceeEEeeecccCCceEEEEeceeE-eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 012234444432 23589999 8999999999999999999999999999999887788999999
Q ss_pred cCCCcEEEEEec
Q 013644 326 HPHIPMFATCGI 337 (439)
Q Consensus 326 s~~~~~l~s~~~ 337 (439)
+.+|..||.++.
T Consensus 283 s~dG~~LAia~s 294 (323)
T KOG1036|consen 283 SMDGSLLAIASS 294 (323)
T ss_pred ccCCCeEEEEec
Confidence 999999999874
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.6e-32 Score=246.89 Aligned_cols=296 Identities=17% Similarity=0.243 Sum_probs=234.6
Q ss_pred cccceEEEEECCCCCEEEEec--CCCeEEEEeCCCC-----------cceeeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 13 HKGCVNAVEFNSTGDFLVSGS--DDKLVIFWDWKDR-----------REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
+...|.++..+|||..+|||+ .|+.++||+.+.- .........|.+.|+|+.|+| ||.+||+|+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~--dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP--DGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC--CCCeEeeccC
Confidence 456799999999999999999 8999999986431 112223468999999999999 9999999999
Q ss_pred CCcEEEEEccc----------C------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEE
Q 013644 80 DGQVRLGQIFE----------D------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFY 143 (439)
Q Consensus 80 dg~i~iw~~~~----------~------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 143 (439)
|+.|.||.... + .......+.+|...|..++|+|++. +|++++.|++|.+|+.++.+.+..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeee
Confidence 99999999873 0 0123456788999999999999997 78999999999999999998887777
Q ss_pred eeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEE
Q 013644 144 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 223 (439)
. |...|..+.|.|-| ++||+-+.|++|++|+..+....+.+.. |... ......+..+.|
T Consensus 169 ~-----------H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~--pf~~-------~~~~T~f~RlSW 227 (942)
T KOG0973|consen 169 G-----------HQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITK--PFEE-------SPLTTFFLRLSW 227 (942)
T ss_pred c-----------ccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeecc--chhh-------CCCcceeeeccc
Confidence 6 78889999999988 8999999999999999766443322211 1100 122456889999
Q ss_pred ccCCCEEEEec-----CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC------------
Q 013644 224 SNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN------------ 286 (439)
Q Consensus 224 ~~~~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~------------ 286 (439)
+|||++|++.. ...+.|.+-.+. +.-..+-||..+ +.++. |+|.
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tW----------------k~~~~LvGH~~p--~evvr-FnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTW----------------KVDKDLVGHSAP--VEVVR-FNPKLFERNNKNGTST 288 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCc----------------eeeeeeecCCCc--eEEEE-eChHHhccccccCCcc
Confidence 99999999873 236777765544 456778899986 77777 5551
Q ss_pred -Cc----eEEEeCCCCeEEEEecCCCceeEeecc-cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 287 -DE----YVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 287 -~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.. .+|+|+.|++|.||.....+++..... ....|..++|+|||-.|+.+|.||+|.+..++..++
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 11 578999999999999877777654432 346899999999999999999999999999876554
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=6.5e-31 Score=226.40 Aligned_cols=287 Identities=19% Similarity=0.235 Sum_probs=238.5
Q ss_pred CcccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCccee-eeecCCcccEEE-EEEeecCCCcEEEEec
Q 013644 1 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKF-SYLSGHLDNIFQ-TRIMPFTDDRKIITSS 78 (439)
Q Consensus 1 ~~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~-~~~~~~~~~~~l~s~~ 78 (439)
|..+++.+.+.||...|..+++.+.. .++++|.||++++|+-...+-+. ..+.+|.+-|.. ++|.+ .++..|++|+
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~ 78 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGG 78 (745)
T ss_pred CCcceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeec
Confidence 46788999999999999999987554 79999999999999976655433 345678888877 88886 3667799999
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.|.+|.+|.+.+.... ..+.+|...|.+++...++. +++|+.|.++++|-..... ..+. +|..
T Consensus 79 ~D~~i~v~~~~~~~P~--~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~--~~l~-----------gH~a 141 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPL--YTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELV--YSLQ-----------GHTA 141 (745)
T ss_pred ccceEEEEecCCCCch--hhhhccccceeeeecCCcCc--eEecccccceEEecchhhh--cccC-----------Ccch
Confidence 9999999999776665 56999999999999888774 6799999999999765433 2222 2888
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeE
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 238 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i 238 (439)
.|.+++.-|++ .+++|+.|.+|++|.-.+ ....+.+|..-|+.+++-+++.++.+++||.|
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~~~-----------------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~I 202 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKGGT-----------------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSI 202 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccCCc-----------------hhhhhccchhheeeeEEecCCCeEeecCCceE
Confidence 99999999974 899999999999998643 12334789999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
++|++.. ..+..+.+|.+. +.++. ..+++..++++++|++++||+.. ++.+.+.-...
T Consensus 203 r~w~~~g-----------------e~l~~~~ghtn~--vYsis-~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt 260 (745)
T KOG0301|consen 203 RLWDLDG-----------------EVLLEMHGHTNF--VYSIS-MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT 260 (745)
T ss_pred EEEeccC-----------------ceeeeeeccceE--EEEEE-ecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc
Confidence 9999954 477888888876 88887 67889999999999999999976 77777776666
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
.|+++.+-++|.. ++|+.||.||||....
T Consensus 261 siWsa~~L~NgDI-vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 261 SIWSAKVLLNGDI-VVGGSDGRVRVFTVDK 289 (745)
T ss_pred ceEEEEEeeCCCE-EEeccCceEEEEEecc
Confidence 8999999888864 6788899999998763
No 76
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.3e-32 Score=231.79 Aligned_cols=362 Identities=17% Similarity=0.237 Sum_probs=265.3
Q ss_pred ccceeeeeeccccceEEEEECCCCC---EEEEecCCCeEEEEeCCCCc------------------------cee-----
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGD---FLVSGSDDKLVIFWDWKDRR------------------------EKF----- 50 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~------------------------~~~----- 50 (439)
+++.+..+.||.+.|.+++|...+. +||++|.|..||||.+.-.. .+.
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 5778899999999999999987554 79999999999999863221 011
Q ss_pred -eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee--eeEE---ecCCCCceEEEEEccCCCcEEEEeCC
Q 013644 51 -SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM--DTKR---LGKHQGRVYKLAVEPGSPYIIYSCGE 124 (439)
Q Consensus 51 -~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~---~~~~~~~v~~i~~~~~~~~~l~s~~~ 124 (439)
..+.+|.+.|+++.|+| .+..|++++.|.++.+|...+...+ .... ..+.........|+|++. .+++-+.
T Consensus 260 eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~ 336 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGR 336 (764)
T ss_pred hhhhcCcccceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-EEEEecc
Confidence 23469999999999999 8999999999999999988665322 2222 334456688999999997 5668889
Q ss_pred CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 125 DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 125 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
-|..++|..+... ...... ...+|-..|..++|+|.| .+|++.+.|.+-|+|-.-..+ ..
T Consensus 337 ~Gg~hlWkt~d~~--~w~~~~------~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q-----------~~ 396 (764)
T KOG1063|consen 337 TGGFHLWKTKDKT--FWTQEP------VISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQ-----------QE 396 (764)
T ss_pred cCcEEEEeccCcc--ceeecc------ccccccccceeeeecCCC-CEEEEeccccceeeecccccc-----------cc
Confidence 9999999832221 111111 122378889999999987 799999999999998755221 11
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCC-------------C----C----------CCCCCCc
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGL-------------G----P----------SPLSLSP 256 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~-------------~----~----------~~~~~~~ 256 (439)
+-....+.-|...++|+++-+....+++|. ...+++|+..... . + ......+
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 222223366888999999998655555554 7788999864210 0 0 0000000
Q ss_pred --------------------------cc-------ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC-----Ce
Q 013644 257 --------------------------ED-------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GH 298 (439)
Q Consensus 257 --------------------------~~-------~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-----g~ 298 (439)
++ .......+.+-||... |.+++ .+|+++++|+++.. ..
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE--v~~l~-~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE--VYALA-ISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee--EEEEE-ecCCCCEEeehhhhCCccceE
Confidence 00 1112334556677765 99999 89999999999764 46
Q ss_pred EEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-----CCCCCchhhhhhhhccccCcce
Q 013644 299 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHS 373 (439)
Q Consensus 299 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 373 (439)
|++|+..+......+.+|+-.|+.++||||+++|++.+.|.++.+|....... .....|.. ++-.+.+.++...
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccce-EEEEcccCcccce
Confidence 99999999999999999999999999999999999999999999999854433 22344544 4444456777888
Q ss_pred EEEeCCCcEEEEEEeccc
Q 013644 374 RITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 374 ~~~~s~dg~v~~w~~~~~ 391 (439)
++++|.|.+|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999998877
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=213.16 Aligned_cols=298 Identities=16% Similarity=0.238 Sum_probs=245.8
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
.+++++.|.||++.|..++.......+.+++.|.+.+||.++++.++.++ .+|.+.|+++.|++ .+.++++++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~--s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHN--SGLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEecc--ccceEEEccCCcc
Confidence 35678899999999999999887789999999999999999999998886 79999999999999 9999999999999
Q ss_pred EEEEEc------ccC--------------------------------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCC
Q 013644 83 VRLGQI------FED--------------------------------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124 (439)
Q Consensus 83 i~iw~~------~~~--------------------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 124 (439)
-.||.. ... -.++...+.+|...|.+..|...++. +++++.
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeec
Confidence 999962 110 01233457789999999999999985 669999
Q ss_pred CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 125 DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 125 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
|.+..+||++++..+..+.. |....+.++-+|.. +++++++.|.+.++||++..
T Consensus 293 DRTAnlwDVEtge~v~~LtG-----------Hd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea-------------- 346 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTG-----------HDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA-------------- 346 (481)
T ss_pred cccceeeeeccCceeccccC-----------cchhccccccCCcc-eEEEEeccCceeEeccchhh--------------
Confidence 99999999999999888876 66678888999975 89999999999999999842
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 284 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 284 (439)
+.....+.+|...|+++.|.-+.+.+.++.|.+|++||+++.. .++.++.... +++.++ .+
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMR---------------splATIRtdS---~~NRva-vs 407 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMR---------------SPLATIRTDS---PANRVA-VS 407 (481)
T ss_pred cceeeeecccccceeEEEEecCCceeecCCCceEEEeeecccc---------------CcceeeecCC---ccceeE-ee
Confidence 1334566899999999999998887766679999999998763 2333443332 377777 78
Q ss_pred CCCceEEEeCCCCeEEEEecCCCceeE----eecccccceEEEeecCCCc--EEEEEecCCeEEEeccCCC
Q 013644 285 PNDEYVMSGSDCGHLFIWKKKGGKLVR----LMVGDRHVVNQLEPHPHIP--MFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 285 ~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 349 (439)
..+..|+.--.+..|++||++..++.+ .-++|...|+|++|..+.. -|++++.|..+.-|.+...
T Consensus 408 ~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 408 KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 788899999999999999998544332 3358999999999986654 4889999999999998643
No 78
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=228.18 Aligned_cols=247 Identities=33% Similarity=0.601 Sum_probs=183.3
Q ss_pred CcccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 1 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 1 ~~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
|+++.+.+.|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+-.+|...|.++.|.|.+++..+++|+.|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 45678889999999999999999999999999999999999999888888888899999999999998888999999999
Q ss_pred CcEEEEEcccC--------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceee-EEeeccCCCC
Q 013644 81 GQVRLGQIFED--------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRL-FYCSSFSENS 151 (439)
Q Consensus 81 g~i~iw~~~~~--------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~ 151 (439)
..|+++|+... -......+..|...|..++..|++++.+.++++||+|+-+|++....-.. ..+.... .
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l--~ 194 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL--V 194 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH--H
Confidence 99999999742 12334557789999999999999999999999999999999997421110 0000000 0
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcc-cC---CCCCCCC-----cccccccccccC---CC---c
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-YS---PISSDTP-----VDTFCPRHLIGK---NN---I 216 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~---~~~~~~~-----~~~~~~~~~~~~---~~---~ 216 (439)
.....-....++.++|..+.+|++|+.+-..++||.+.... .. ......| +..+++.++... .. .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 00001234789999999999999999999999999643221 11 1111112 333443333110 11 1
Q ss_pred cEEEEEEccCCC-EEEEecCCeEEEEEccCCCCC
Q 013644 217 HITGLAYSNTSE-LLISYNDELVYLFEKNMGLGP 249 (439)
Q Consensus 217 ~i~~~~~~~~~~-~l~~~~d~~i~i~d~~~~~~~ 249 (439)
-++-+.|+|+|. +|+.-+...|+++|+..+..+
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 256678999995 555557889999999876543
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=240.11 Aligned_cols=253 Identities=15% Similarity=0.216 Sum_probs=200.5
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc----------------------------e-------------
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG----------------------------R------------- 93 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~----------------------------~------------- 93 (439)
.|.+.|+++.|++ ||+|||+|+.|+.|+||.+...+ .
T Consensus 265 ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 8999999999999 99999999999999999886500 0
Q ss_pred -----------------eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 94 -----------------MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 94 -----------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
.+...+.+|.+.|..+.|+.++ +|++++-|.+|++|++....++..+. |
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~------------H 408 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS------------H 408 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe------------c
Confidence 0012356799999999999986 67799999999999999999999887 7
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 235 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d 235 (439)
..-|+|++|+|-+.++|++|+-||.|+||++...+...- ..-..-|++++|.|+|++.+.|+ +
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W----------------~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW----------------NDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee----------------hhhhhhheeEEeccCCceEEEEEec
Confidence 888999999999889999999999999999987653211 22246699999999999999998 9
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
|.+++|+.....-.....+.. +..+... + ..|+++.|+..+...+++.+.|..|||||..+.+++..|+|
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~------~~~Kk~~---~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRL------HNKKKKQ---G-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred cEEEEEEccCCeEEEeeeEee------ccCcccc---C-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence 999999987652111110000 0001111 1 14999996655555677888999999999999999999987
Q ss_pred ccc--ceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 316 DRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 316 h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+.. .=....|+.||++|++++.|..|+||+....
T Consensus 543 ~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 543 FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 653 3345678999999999999999999998543
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.1e-30 Score=190.57 Aligned_cols=301 Identities=20% Similarity=0.249 Sum_probs=232.6
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCC--------------cceeeeecCCcccEEEEEEeec
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDR--------------REKFSYLSGHLDNIFQTRIMPF 68 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~ 68 (439)
.|+.+.+|. .+..|.+++|+|.|.+.|+|+...+.+|--+..- ..+.+.-+.|.+.|+|.+|+|
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~- 99 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP- 99 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-
Confidence 355555665 4678999999999999999999999998754221 112223357899999999999
Q ss_pred CCCcEEEEecCCCcEEEEEcccCcee---eeEEecCCCCceEEEEEccC---CCcEEEEeC-CCCcEEEEEccCCCceee
Q 013644 69 TDDRKIITSSADGQVRLGQIFEDGRM---DTKRLGKHQGRVYKLAVEPG---SPYIIYSCG-EDGFVQHFDLRSDSATRL 141 (439)
Q Consensus 69 ~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 141 (439)
+|.+|++|+.|.+|++.-.+...+. ....+.-|.+.|..++|..+ +..+|++++ .|..|++-|-.+++....
T Consensus 100 -~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 -CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred -ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999876543321 11346678999999999653 334666655 467788888888877666
Q ss_pred EEeeccCCCCCCCCceeeeEEEe-ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEE
Q 013644 142 FYCSSFSENSKQPMNSIRLNAIV-IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 220 (439)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (439)
+.. |.+-|.++- |+ +.++++|+.|.+|++||++-...+..+.....-. .-....|.+
T Consensus 179 ~sg-----------htghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~--------glessavaa 236 (350)
T KOG0641|consen 179 LSG-----------HTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG--------GLESSAVAA 236 (350)
T ss_pred ecC-----------CcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCC--------CcccceeEE
Confidence 654 566676663 43 3799999999999999999876554433221110 113467999
Q ss_pred EEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeE
Q 013644 221 LAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 299 (439)
Q Consensus 221 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i 299 (439)
++..|.|++|+++. |....+||++.+ +.++.+..|... |.++. |+|...|+++++.|..|
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~----------------r~iq~f~phsad--ir~vr-fsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGG----------------RMIQRFHPHSAD--IRCVR-FSPGAHYLLTCSYDMKI 297 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCC----------------ceeeeeCCCccc--eeEEE-eCCCceEEEEecccceE
Confidence 99999999999997 999999999988 678888888876 99999 89999999999999999
Q ss_pred EEEecCCC----ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 300 FIWKKKGG----KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 300 ~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
++-|++.. -.+.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 298 kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 298 KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99998732 1233445688889999999998889999999999999874
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-31 Score=207.03 Aligned_cols=250 Identities=20% Similarity=0.375 Sum_probs=203.8
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
|.++..++.|.++|++++.+ +.++|+||.|-+|+|||+....++..+ ..|.+.|+++.|.+....+.|++|+.||.|
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCCcE
Confidence 45567789999999999987 999999999999999999998877665 589999999999983233499999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
.+|+...- .....+.+|.+.|+.++.+|.++ +.++.+.|+.++.||+-+++.-....... ....+
T Consensus 110 ~iw~~~~W--~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~------------~at~v 174 (362)
T KOG0294|consen 110 IIWRVGSW--ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN------------KATLV 174 (362)
T ss_pred EEEEcCCe--EEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC------------cceee
Confidence 99998554 44577999999999999999998 77899999999999999998776665432 23449
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEc
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEK 243 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~ 243 (439)
.|+|.| .+|+.+..+ .|-+|.+.+.+....+. ....+.++.|...+.+++.+.++.|.+||.
T Consensus 175 ~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~----------------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 175 SWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIE----------------NPKRILCATFLDGSELLVGGDNEWISLKDT 236 (362)
T ss_pred EEcCCC-CEEEEEecc-EEEEEecccHhHhhhhh----------------ccccceeeeecCCceEEEecCCceEEEecc
Confidence 999988 666666654 68899988765332211 124577888888888887778999999998
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe-eCCCCceEEEeCCCCeEEEEecCCC
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
... .+...+.+|.+. |..+.+ -.|++.||++++.||.|++||+...
T Consensus 237 ds~----------------~~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 237 DSD----------------TPLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCC----------------ccceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 865 577888999987 888773 4578899999999999999998755
No 82
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.5e-31 Score=234.44 Aligned_cols=271 Identities=17% Similarity=0.208 Sum_probs=200.9
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCccee------------eeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKF------------SYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
|-..|+....++++..+++++.+.....|+...+..+. ..+.+|.+.|++++|+|+ ++++|++++.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 33556667777887777888888878888764432211 135689999999999984 57799999999
Q ss_pred CcEEEEEcccCce-----eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCC
Q 013644 81 GQVRLGQIFEDGR-----MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 81 g~i~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
++|++||+.+... .....+.+|...|.+++|+|++..+|++++.|++|++||+++++....+..
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----------- 166 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----------- 166 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-----------
Confidence 9999999976532 123568899999999999998766889999999999999999876655543
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCc-cEEEEEEccCCCEEEEe-
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELLISY- 233 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~- 233 (439)
|...|.+++|+|++ .+|++++.|+.|++||+++++.+. ....|.. ....+.|.+++..++++
T Consensus 167 h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~---------------tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 167 HSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVS---------------SVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred CCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEE---------------EEecCCCCcceEEEEcCCCCeEEEEe
Confidence 56679999999987 899999999999999999865321 1134443 34567788887666543
Q ss_pred ----cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-CCCeEEEEecCCCc
Q 013644 234 ----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGK 308 (439)
Q Consensus 234 ----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 308 (439)
.|+.|++||+++.. ........+... ...+.+|++++++|++++ .|+.|++||+.+++
T Consensus 231 ~s~s~Dr~VklWDlr~~~---------------~p~~~~~~d~~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMA---------------SPYSTVDLDQSS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred cCCCCCCeEEEEeCCCCC---------------CceeEeccCCCC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 27899999997642 122222222221 233344899999998887 59999999999998
Q ss_pred eeEeecc-cccceEEEeecCC
Q 013644 309 LVRLMVG-DRHVVNQLEPHPH 328 (439)
Q Consensus 309 ~~~~~~~-h~~~v~~~~~s~~ 328 (439)
++..... +..++..++|.|.
T Consensus 294 ~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 294 LTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eEEEeeccCCCCCcceEeccc
Confidence 7766543 3457888888885
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-33 Score=210.99 Aligned_cols=250 Identities=20% Similarity=0.314 Sum_probs=212.5
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
-+.+|.||++.|.+..++.+...-|+++.|-+-+|||.-++..+..+ .|+..|.+++|+. |.++|++|+.+..++|
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~--ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQ--DSNYLLTGGQEKLLRV 126 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecc--cchhhhccchHHHhhh
Confidence 36789999999999999999988999999999999999999888775 7888999999999 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
+|++..+.. ...+.+|++.|..+.|....+ .+++.+.|++||+||.+++..++.+.. ...|+++.+
T Consensus 127 fdln~p~Ap-p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~------------~s~VtSlEv 192 (334)
T KOG0278|consen 127 FDLNRPKAP-PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEF------------NSPVTSLEV 192 (334)
T ss_pred hhccCCCCC-chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEec------------CCCCcceee
Confidence 999776554 356889999999999998887 455889999999999999999888874 556999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
+++| .++ +-...+.|.+||..+...++.+.. ...|.+...+|+..++++|+ |..++.||..
T Consensus 193 s~dG-~il-Tia~gssV~Fwdaksf~~lKs~k~----------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 193 SQDG-RIL-TIAYGSSVKFWDAKSFGLLKSYKM----------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred ccCC-CEE-EEecCceeEEeccccccceeeccC----------------ccccccccccCCCceEEecCcceEEEEEecc
Confidence 9987 444 445567899999998775543322 34578888999988888876 9999999999
Q ss_pred CCCCCCCCCCCcccccccccceeE-eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCcee
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 310 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 310 (439)
++ ..+..+ ++|..+ |.|+. |+|+|...++|++||+|++|.+..++..
T Consensus 255 Tg----------------eEi~~~nkgh~gp--VhcVr-FSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TG----------------EEIGSYNKGHFGP--VHCVR-FSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CC----------------ceeeecccCCCCc--eEEEE-ECCCCceeeccCCCceEEEEEecCCCch
Confidence 88 444454 777776 99999 8999999999999999999998766543
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=211.54 Aligned_cols=295 Identities=18% Similarity=0.254 Sum_probs=232.2
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc----------------CceeeeEEecCCCCceEEEEEccC
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE----------------DGRMDTKRLGKHQGRVYKLAVEPG 114 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~~~v~~i~~~~~ 114 (439)
.++..|+.++.+.+|+| ||.++++|+.|..|+|.|++. .....++.+..|.+.|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 45678999999999999 999999999999999999861 011334667889999999999999
Q ss_pred CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccC
Q 013644 115 SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS 194 (439)
Q Consensus 115 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 194 (439)
.. +|++++.|++|+++|+......+.++..+ ...+|.++.|+|.| .++++|..-..+++||+.+.++..
T Consensus 184 e~-ILiS~srD~tvKlFDfsK~saKrA~K~~q---------d~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 184 ET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQ---------DTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred hh-eEEeccCCCeEEEEecccHHHHHHHHHhh---------ccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEee
Confidence 86 89999999999999998765444333222 34569999999987 899999999999999999876432
Q ss_pred CCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC
Q 013644 195 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 273 (439)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (439)
. ......|...|+++.+++.+++.++++ ||.|++||--.+ +++.++.....
T Consensus 253 s------------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----------------rCv~t~~~AH~ 304 (430)
T KOG0640|consen 253 S------------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----------------RCVRTIGNAHG 304 (430)
T ss_pred e------------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH----------------HHHHHHHhhcC
Confidence 2 222367899999999999999999998 999999997666 67777776666
Q ss_pred cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-----cceEEEeecCCCcEEEEEec-CCeEEEeccC
Q 013644 274 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-----HVVNQLEPHPHIPMFATCGI-EKTVKLWAPM 347 (439)
Q Consensus 274 ~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 347 (439)
...|.+.. |..+|+|+++.+.|..+++|.+.+++++..+.|.. ..-+...|.....+++.-.. .+.+.-||..
T Consensus 305 gsevcSa~-Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 305 GSEVCSAV-FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred CceeeeEE-EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 66788888 89999999999999999999999999998887642 12344557777777665543 4688999987
Q ss_pred CCCCCCC--CCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 348 PTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 348 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
+.....+ .+|.+.+-.+. .++.....+++|.|-..++|--
T Consensus 384 tadr~~l~slgHn~a~R~i~-HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 384 TADRVALLSLGHNGAVRWIV-HSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred chhhhhhcccCCCCCceEEE-eCCCCCceeeecccceeeeeee
Confidence 7654222 24555554333 3445668899999999999963
No 85
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-31 Score=213.79 Aligned_cols=297 Identities=14% Similarity=0.235 Sum_probs=226.5
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCC--cEEEEeCCCCcEEEEE
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSP--YIIYSCGEDGFVQHFD 132 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd 132 (439)
.|...|.++... +..|++|+.||.+++|+.. ++.. ..+.+|.++|.+++|.-.+. ..|++++.|.++++|.
T Consensus 103 ~hdDWVSsv~~~----~~~IltgsYDg~~riWd~~-Gk~~--~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 103 LHDDWVSSVKGA----SKWILTGSYDGTSRIWDLK-GKSI--KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cchhhhhhhccc----CceEEEeecCCeeEEEecC-CceE--EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 466666666653 5899999999999999984 4444 56889999999888854332 2588999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc--ccCCCC--------CCCCc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH--WYSPIS--------SDTPV 202 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~--------~~~~~ 202 (439)
++.+........ ...+|...|.++...+++ ..+++|+.|..|.+|+..+.. .+.... .....
T Consensus 176 ~~~~~~~~~~~~-------~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 176 WNVGENKVKALK-------VCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred ecCchhhhhHHh-------HhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 987764332211 111388899999999987 899999999999999933211 111100 11112
Q ss_pred ccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe
Q 013644 203 DTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 282 (439)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 282 (439)
....|...+.+|..+|.++.|++.+..+.++-|.+|+.||+.++ .....+.+... +.++.
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~ks---l~~i~- 307 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNKS---LNCIS- 307 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc----------------cceeeeecCcc---eeEee-
Confidence 22344556789999999999999544444444999999999988 44455555443 78888
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCc---eeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCCC--CCCCCC
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPD 356 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~--~~~~~~ 356 (439)
++|..++|++|+.|..|++||.+++. ....|.+|.+.|.++.|+|... +|++++.|+++++||+.+.+ +..+.+
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 79999999999999999999987763 4578899999999999999776 68999999999999998765 366778
Q ss_pred chhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 357 NAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
|...+..+.|.. +..+++++.|.+++++.-
T Consensus 388 h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 388 HNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 888888777643 568999999999999864
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-30 Score=224.56 Aligned_cols=274 Identities=19% Similarity=0.276 Sum_probs=222.5
Q ss_pred EEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe
Q 013644 20 VEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL 99 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 99 (439)
+.|+. ...||+|.. ..|.+|+..++... .....+...|+++.|++ +|.+|++|..+|.|.|||..+.+.+ ..+
T Consensus 183 ldWss-~n~laValg-~~vylW~~~s~~v~-~l~~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~--~~~ 255 (484)
T KOG0305|consen 183 LDWSS-ANVLAVALG-QSVYLWSASSGSVT-ELCSFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKT--RTL 255 (484)
T ss_pred hhccc-CCeEEEEec-ceEEEEecCCCceE-EeEecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhhcccc--ccc
Confidence 56673 346777653 57999999888633 32334489999999999 9999999999999999999877666 446
Q ss_pred cC-CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec
Q 013644 100 GK-HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS 178 (439)
Q Consensus 100 ~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 178 (439)
.+ |...|-+++|.. ..+.+|+.++.|..+|++..+..... ...|...|..+.|++++ +++|+|+.
T Consensus 256 ~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~----------~~~H~qeVCgLkws~d~-~~lASGgn 321 (484)
T KOG0305|consen 256 RGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVST----------LQGHRQEVCGLKWSPDG-NQLASGGN 321 (484)
T ss_pred cCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhh----------hhcccceeeeeEECCCC-CeeccCCC
Confidence 66 999999999993 36889999999999999987755441 11278889999999998 99999999
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec---CCeEEEEEccCCCCCCCCCC
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN---DELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~---d~~i~i~d~~~~~~~~~~~~ 254 (439)
|+.+.|||.... .+...+..|...|..++|+|-. .+||+|+ |+.|++||..++
T Consensus 322 DN~~~Iwd~~~~---------------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-------- 378 (484)
T KOG0305|consen 322 DNVVFIWDGLSP---------------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-------- 378 (484)
T ss_pred ccceEeccCCCc---------------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC--------
Confidence 999999999543 2334458899999999999965 6778773 999999999877
Q ss_pred CcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe--CCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEE
Q 013644 255 SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 332 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 332 (439)
..+.... ....|..+. |++..+-|+++ ..++.|.||+..+.+.+..+.+|...|..++++|||..+
T Consensus 379 --------~~i~~vd---tgsQVcsL~-Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 379 --------ARIDSVD---TGSQVCSLI-WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred --------cEecccc---cCCceeeEE-EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 2333332 223499999 78887656553 457899999999999999999999999999999999999
Q ss_pred EEEecCCeEEEeccCCC
Q 013644 333 ATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 333 ~s~~~dg~i~iw~~~~~ 349 (439)
++|+.|.++++|++-+.
T Consensus 447 ~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFDE 463 (484)
T ss_pred EEecccCcEEeccccCC
Confidence 99999999999998664
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-31 Score=217.04 Aligned_cols=252 Identities=19% Similarity=0.306 Sum_probs=191.7
Q ss_pred ccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCccee---------eeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 12 GHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKF---------SYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
-|.+.|+.+.+-|.. .++|+++..+.|.|||+....... ..+.+|+..-+.++|++. ....|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cceeEeeccCCC
Confidence 389999999999965 667778888999999986532211 146799988899999985 667899999999
Q ss_pred cEEEEEcccCce-----eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC--CceeeEEeeccCCCCCCC
Q 013644 82 QVRLGQIFEDGR-----MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD--SATRLFYCSSFSENSKQP 154 (439)
Q Consensus 82 ~i~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 154 (439)
+|++||+..... .....+.+|...|..++|++....+|++++.|+.+.|||++++ +..... .
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~-----------~ 269 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV-----------K 269 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-----------c
Confidence 999999975433 2345688999999999999999889999999999999999963 222222 2
Q ss_pred CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 155 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
.|...++|++|+|.+..+||+|+.|++|.+||+|+.. .+...+.+|...|.++.|+|..
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------~~lh~~e~H~dev~~V~WSPh~------- 328 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------------KPLHTFEGHEDEVFQVEWSPHN------- 328 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------------cCceeccCCCcceEEEEeCCCC-------
Confidence 2788999999999999999999999999999999865 1222234444444444444443
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC--------
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------- 306 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------- 306 (439)
...||+++.|+.+.+||+..
T Consensus 329 ----------------------------------------------------etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 329 ----------------------------------------------------ETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred ----------------------------------------------------CceeEecccCCcEEEEeccccccccChh
Confidence 23445555555555555432
Q ss_pred ------CceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCC
Q 013644 307 ------GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 307 ------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 348 (439)
.+++..-.||...|..+.|+|+.. .|++++.|+.+.||.+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 123344568999999999999988 488999999999999864
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-30 Score=202.78 Aligned_cols=241 Identities=13% Similarity=0.217 Sum_probs=197.6
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCC--cEEEEeCCCCcEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSP--YIIYSCGEDGFVQH 130 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~i 130 (439)
+..|.++|++++. ++.++|+|+.|-+|+|||++..... ..+-.|.+.|+++.|.+.-. + |++|+.||.|.+
T Consensus 39 ~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~ql--g~ll~HagsitaL~F~~~~S~sh-LlS~sdDG~i~i 111 (362)
T KOG0294|consen 39 FSAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQL--GILLSHAGSITALKFYPPLSKSH-LLSGSDDGHIII 111 (362)
T ss_pred ccccccceeEEEe----cceeEeccCCCCcEEEEeccchhhh--cceeccccceEEEEecCCcchhh-eeeecCCCcEEE
Confidence 4689999999998 5799999999999999999876655 45778999999999998753 4 559999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
|+...-.....+.. |..+|+.++.+|.+ ++.++.+.|+.+++|++-.++.-...
T Consensus 112 w~~~~W~~~~slK~-----------H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~-------------- 165 (362)
T KOG0294|consen 112 WRVGSWELLKSLKA-----------HKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVL-------------- 165 (362)
T ss_pred EEcCCeEEeeeecc-----------cccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceee--------------
Confidence 99998877777765 77789999999987 88889999999999999987732111
Q ss_pred ccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 211 IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
.-....+.+.|+|.|.+++......|-+|.+.+. ..+..-..+..+.++.| -++.+|
T Consensus 166 --~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A-------------------~v~~~i~~~~r~l~~~~--l~~~~L 222 (362)
T KOG0294|consen 166 --NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA-------------------SVFREIENPKRILCATF--LDGSEL 222 (362)
T ss_pred --ccCCcceeeEEcCCCCEEEEEeccEEEEEecccH-------------------hHhhhhhccccceeeee--cCCceE
Confidence 1122234499999999999999999999998764 12222222233666664 478899
Q ss_pred EEeCCCCeEEEEecCCCceeEeecccccceEEEee--cCCCcEEEEEecCCeEEEeccCCC
Q 013644 291 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP--HPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
++|.+|+.|.+||..+..+...+.+|...|.++.+ .|++.+|+|+|.||.|+|||+...
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999999999999999999999999984 567889999999999999999654
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-29 Score=198.02 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=222.6
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC--CCcEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE--DGFVQH 130 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~i 130 (439)
+....+.|.++.|++ +|.+|++++.|.+++|||..++... ..+..+.-.+..++|......++ .++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~--~ti~skkyG~~~~~Fth~~~~~i-~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQV--KTINSKKYGVDLACFTHHSNTVI-HSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCcee--eEeecccccccEEEEecCCceEE-EccCCCCCceEE
Confidence 445678899999999 9999999999999999999888876 44666777888888877766444 4444 889999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
.++.+++.++.+.. |...|++++.+|-+ ..+++++.|++|++||++..++...+
T Consensus 85 Lsl~dNkylRYF~G-----------H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l-------------- 138 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPG-----------HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL-------------- 138 (311)
T ss_pred EEeecCceEEEcCC-----------CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE--------------
Confidence 99999999998876 78889999999987 89999999999999999976532221
Q ss_pred ccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC-CCcceeeeEEeeCCCCc
Q 013644 211 IGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~s~~~~ 288 (439)
+...-..++|.|+|-++|++. .+.|++||++.-.. .+...+.-. ......+.+. |||||+
T Consensus 139 ---~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~-FS~dGK 200 (311)
T KOG1446|consen 139 ---NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLE-FSPDGK 200 (311)
T ss_pred ---ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCC--------------CCceeEccCCCCccceeeeE-EcCCCC
Confidence 112234578999999999997 44999999986421 122333322 2223478888 899999
Q ss_pred eEEEeCCCCeEEEEecCCCceeEeecccccc---eEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCC-chhhhhh
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMK 363 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~-~~~~~~~ 363 (439)
+|+.++..+.+++.|.-+|..+..+.++... -...+|+||++++++|+.||+|.+|+++++.. ..+.+ +...+..
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~ 280 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSC 280 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccc
Confidence 9999999999999999999999999877642 25678999999999999999999999988765 44444 3333333
Q ss_pred hhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 364 ANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 364 ~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
.. .++...+-.+.+..+.+|-....
T Consensus 281 ~~---fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 281 VR---FNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred cc---cCCceeeeeecCceEEEEecccc
Confidence 32 34556666777788999965433
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=226.48 Aligned_cols=342 Identities=16% Similarity=0.242 Sum_probs=254.1
Q ss_pred cccceE---EEEECC-CCCEEEEecCCCeEEEEeCCCCcc-----eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 13 HKGCVN---AVEFNS-TGDFLVSGSDDKLVIFWDWKDRRE-----KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 13 h~~~I~---~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
|...|. ++..+. .+++|.|||.||.|++|++..... -...++.|...|..+.... +++.|++++.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~--~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG--NGKTLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc--CCCceEEecCCceE
Confidence 455555 555554 678899999999999999865432 1233578999999999988 89999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEE-ccCCCcEEEEeCCCCcEEEEEccCCCc--eeeEEeeccCCCCCCCCceeee
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAV-EPGSPYIIYSCGEDGFVQHFDLRSDSA--TRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~v 160 (439)
++|+...+...+...+..|.+.|.|++. .++. .++|+||-|+.|.+||+.++.. +..+.. ........++...|
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~--~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNN--VTVNSLGSGPKDSI 174 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccc--cccccCCCCCccce
Confidence 9999987754555678899999999999 5555 4899999999999999998843 222211 11111112467889
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 239 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~ 239 (439)
++++.++.+ ..+++|+..+.+++||.++.+.+ ..+.+|...|..+..+++|..+++++ ||+|+
T Consensus 175 YSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki---------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 175 YSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI---------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred eeeecCCcc-eEEEecCcccceEEeccccccce---------------eeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 999999977 89999999999999999987632 22369999999999999998888775 99999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccc
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 319 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 319 (439)
+||+... +++.++..|... +.++. .+|+=.++++|+.||.|..=|+.+......+-....+
T Consensus 239 lWdLgqQ----------------rCl~T~~vH~e~--VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daP 299 (735)
T KOG0308|consen 239 LWDLGQQ----------------RCLATYIVHKEG--VWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAP 299 (735)
T ss_pred eeecccc----------------ceeeeEEeccCc--eEEEe-eCCCcceEEecCCCCcEEecccCCchhheEeecCCCc
Confidence 9999876 788889999887 89988 7899999999999999999999885333323234567
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEeccCCCC-------CCC-CC---C-------------chhhhhhhhccccCcceEE
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPP-LP---D-------------NAEKIMKANKQGREDHSRI 375 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~-~~---~-------------~~~~~~~~~~~~~~~~~~~ 375 (439)
|..+..+...+-+-+++.|+.|+-|.....- ... .. . +.+..+.....-.+.+.++
T Consensus 300 v~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVl 379 (735)
T KOG0308|consen 300 VLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVL 379 (735)
T ss_pred hhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEe
Confidence 7777777554544667788999999653211 100 00 0 0011111111112456788
Q ss_pred EeCCCcEEEEEEeccccee
Q 013644 376 TLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 376 ~~s~dg~v~~w~~~~~~~~ 394 (439)
+-..+|.+.+||+-+....
T Consensus 380 TkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 380 TKDAKGNVALWDILACVKV 398 (735)
T ss_pred eecCCCCEEEEEeeeeeeh
Confidence 9999999999999776555
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-30 Score=224.98 Aligned_cols=357 Identities=14% Similarity=0.184 Sum_probs=261.3
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCC
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSAD 80 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d 80 (439)
++-+.+++|+++...|+++.=+|-=+.+|.|..+|+|.+++++.++.+..+. ...+.|+.++|.. ||..+ ++|+..
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrt--DG~p~las~~~~ 266 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRT--DGNPLLASGRSN 266 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEecc--CCCeeEEeccCC
Confidence 5567899999999999999999988899999999999999999998887763 2259999999997 77754 566667
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
|.+.+||++..+.. ......|.+.|....|.|..+ ++++++.|..+++|-..++.....+... ..+|..+.
T Consensus 267 G~m~~wDLe~kkl~-~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~-------R~GHs~Pp 337 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLI-NVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRS-------RGGHSAPP 337 (910)
T ss_pred ceEEEEEcCCCeee-eeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheee-------ccCCCCCc
Confidence 99999999765543 344557889999999999887 7889999999999977755433222111 12277788
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCC------------C-------CCccccccc-------------
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS------------D-------TPVDTFCPR------------- 208 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~-------~~~~~~~~~------------- 208 (439)
.++.|.-..+..+.+++.|++++.+++.....-..+.. . +++..+...
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 89999866668999999999888887654221111000 0 000000000
Q ss_pred -------------------c-----cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 209 -------------------H-----LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 209 -------------------~-----~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
. .+......+++++.++.|++.+.|. .|.|-+|+++.+ .
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG----------------i 481 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG----------------I 481 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC----------------e
Confidence 0 0011236788999999999988885 999999999988 2
Q ss_pred cceeE---eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc--------------------------------
Q 013644 264 EPQVY---SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-------------------------------- 308 (439)
Q Consensus 264 ~~~~~---~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------- 308 (439)
....+ ..|..+ |++++ ...-++.+++++.+|.+++||.....
T Consensus 482 ~r~sf~~~~ah~~~--V~gla-~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I 558 (910)
T KOG1539|consen 482 HRKSFGDSPAHKGE--VTGLA-VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI 558 (910)
T ss_pred eecccccCccccCc--eeEEE-ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence 33344 345544 88888 67777889999999999999977633
Q ss_pred ---------eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCC
Q 013644 309 ---------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP 379 (439)
Q Consensus 309 ---------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (439)
.++.|.+|.+.|++++|||||++|++++.|++|++||+.++.+.....-..+.. ....++.+.++++..-
T Consensus 559 ~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~-sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCT-SLSFSPNGDFLATVHV 637 (910)
T ss_pred EEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcce-eeEECCCCCEEEEEEe
Confidence 233456899999999999999999999999999999998887633322222222 2235666777777777
Q ss_pred C-cEEEEEEecc
Q 013644 380 D-VIMHVLRLQR 390 (439)
Q Consensus 380 d-g~v~~w~~~~ 390 (439)
| .-|.+|.-+.
T Consensus 638 d~~gIylWsNks 649 (910)
T KOG1539|consen 638 DQNGIYLWSNKS 649 (910)
T ss_pred cCceEEEEEchh
Confidence 7 5688886543
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-30 Score=212.00 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=229.0
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee----------------ee-cCCcccEEEEEEeecC
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS----------------YL-SGHLDNIFQTRIMPFT 69 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~----------------~~-~~h~~~v~~~~~~~~~ 69 (439)
.+.+..|.-+|.+++++|++++.++++.+++|.=|++.+++.... .- ..|...+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 456778999999999999999999999999999999987753210 01 26888999999999
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
|+.+|++|+.|..|.||+..+.+.+ +.+.+|.+.|.+++|-.... -+++++.|+.|++|++.....+..+..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetlyG----- 284 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHV--KVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETLYG----- 284 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchh--hcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHHhC-----
Confidence 9999999999999999999988776 44899999999999987665 477999999999999999888877765
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
|+..|.++...... +.+-+|+.|+++++|++... .+.++.++.+.+-|++|-.+..+
T Consensus 285 ------Hqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ee----------------sqlifrg~~~sidcv~~In~~Hf 341 (479)
T KOG0299|consen 285 ------HQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEE----------------SQLIFRGGEGSIDCVAFINDEHF 341 (479)
T ss_pred ------Cccceeeechhccc-ceEEeccccceeEEEecccc----------------ceeeeeCCCCCeeeEEEecccce
Confidence 77788888877654 66667779999999999652 23344677889999999988877
Q ss_pred EEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC--
Q 013644 230 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-- 307 (439)
Q Consensus 230 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-- 307 (439)
+..+.+|.|.+|++....+............. +..-..+..|++++ ..|...++|+|+.+|.|++|.+..+
T Consensus 342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~------~~~~~~~~Witsla-~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE------LDPVNGNFWITSLA-VIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred eeccCCceEEEeeecccCceeEeeccccccCC------ccccccccceeeeE-ecccCceEEecCCCCceEEEEecCCcc
Confidence 77777999999999776322211110000000 00111112588998 7899999999999999999998877
Q ss_pred --ceeEeecccccceEEEeecCCCcEEEEE-ecCCeEEEe
Q 013644 308 --KLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLW 344 (439)
Q Consensus 308 --~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iw 344 (439)
+++..+. -.+.|++++|+++|+.|++| +....+-=|
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 3444444 45789999999999955544 444444334
No 93
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.5e-29 Score=226.62 Aligned_cols=250 Identities=14% Similarity=0.119 Sum_probs=184.7
Q ss_pred ecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCC-CcEEEEecCCCcEEEEEcccCce------eeeEEecCCCC
Q 013644 32 GSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD-DRKIITSSADGQVRLGQIFEDGR------MDTKRLGKHQG 104 (439)
Q Consensus 32 ~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~ 104 (439)
|+.++.|++|+...... ...+.+|.+.|.+++|+| + +.+|++|+.|++|++|++.++.. .....+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~-v~~L~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP-VIKLKGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCce-EEEEcCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 56678999999876544 344689999999999999 5 78999999999999999976432 12235778999
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
.|.+++|+|++..++++++.|++|++||+++++....+. +...|.+++|+|++ .+|++++.|+.|++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------------~~~~V~SlswspdG-~lLat~s~D~~IrI 193 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------------MPKKLSSLKWNIKG-NLLSGTCVGKHMHI 193 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------------cCCcEEEEEECCCC-CEEEEEecCCEEEE
Confidence 999999999998778899999999999999987655443 23469999999987 79999999999999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEE-----EEEEccCCCEEEEec-C----CeEEEEEccCCCCCCCCCC
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-----GLAYSNTSELLISYN-D----ELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~ 254 (439)
||+++++.+. .+.+|.+.+. ...|++++.++++++ + +.|++||++...
T Consensus 194 wD~Rsg~~i~---------------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~------- 251 (568)
T PTZ00420 194 IDPRKQEIAS---------------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT------- 251 (568)
T ss_pred EECCCCcEEE---------------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-------
Confidence 9999876321 1244554432 234568887777754 4 379999998532
Q ss_pred CcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec--ccccceEEEeecCCC
Q 013644 255 SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHI 329 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~~~ 329 (439)
..+..+..+.....+.... .+++|.++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 252 --------~pl~~~~ld~~~~~L~p~~-D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 252 --------SALVTMSIDNASAPLIPHY-DESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred --------CceEEEEecCCccceEEee-eCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 2333333333222233332 456789999999999999999987643 2222 145688899999974
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-30 Score=221.56 Aligned_cols=243 Identities=19% Similarity=0.279 Sum_probs=210.8
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
+.+.|+++.|+++|++||+|..+|.|.|||..+.+.+..+...|...|-+++|. +..+.+|+.++.|..+|++..+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecch
Confidence 478999999999999999999999999999998887777644499999999995 6789999999999999998877
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
.... .+.+|...|..+.|++++. .+++|+.|+.+.|||.....+...+.. |...|.+++|+|....+
T Consensus 292 ~~~~-~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~-----------H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 292 HVVS-TLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTE-----------HTAAVKALAWCPWQSGL 358 (484)
T ss_pred hhhh-hhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEec-----------cceeeeEeeeCCCccCc
Confidence 6544 5889999999999999998 688999999999999977666666654 78899999999998889
Q ss_pred EEEee--cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe---cCCeEEEEEccCCC
Q 013644 173 FAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY---NDELVYLFEKNMGL 247 (439)
Q Consensus 173 l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~d~~i~i~d~~~~~ 247 (439)
||+|+ .|+.|++||..+++.+..+ .....|.+|.|++..+-|+++ +++.|.||...+.
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~v----------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~- 421 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSV----------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM- 421 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEeccc----------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-
Confidence 99975 6899999999988754332 236789999999998666655 3789999998765
Q ss_pred CCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC
Q 013644 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
.....+.+|... |..++ ++|||..+++|+.|.++++|++-..
T Consensus 422 ---------------~~~~~l~gH~~R--Vl~la-~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 ---------------KLVAELLGHTSR--VLYLA-LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------------ceeeeecCCcce--eEEEE-ECCCCCEEEEecccCcEEeccccCC
Confidence 677889999987 99999 8999999999999999999998764
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.8e-30 Score=201.26 Aligned_cols=305 Identities=16% Similarity=0.225 Sum_probs=218.8
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-eeee--cCCcccEEEEEEeecCCCcEEE-EecCCCc
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FSYL--SGHLDNIFQTRIMPFTDDRKII-TSSADGQ 82 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~--~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~ 82 (439)
+..|+||.+.|++++|+.||++|||++.|++|+||+++..... .+.+ .-.-+..+.+.|.| |-.-++ +.-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence 3568999999999999999999999999999999999764321 1111 01123457889999 766554 4555678
Q ss_pred EEEEEcccCc---eeee-------EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCC
Q 013644 83 VRLGQIFEDG---RMDT-------KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSK 152 (439)
Q Consensus 83 i~iw~~~~~~---~~~~-------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 152 (439)
+++|.+...+ .... ..-..|.-.+..+-....+. ++++++.|..|.+|+++ |+.+..+...
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtn------- 227 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTN------- 227 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccc-------
Confidence 9999874321 1100 01223566677777766666 68899999999999999 7777766543
Q ss_pred CCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 153 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
+..-+..+.+|+| +++++++-...|++|.+--.+ +..++.......+.+|...|..++|+++.+.+++
T Consensus 228 ----q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~k-------dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 228 ----QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTK-------DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred ----cccccceeeCCCC-cEEEEecCCCCceEEEEEecc-------CcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 3335667889987 899999988999999976443 2333444444556899999999999999999998
Q ss_pred ec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE--eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce
Q 013644 233 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 233 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 309 (439)
.+ ||.+++||++-...... ....++.. .-|........+. .+|+|+.||.... ..+++|..++|+.
T Consensus 296 vSkDG~wriwdtdVrY~~~q---------Dpk~Lk~g~~pl~aag~~p~RL~-lsP~g~~lA~s~g-s~l~~~~se~g~~ 364 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQ---------DPKILKEGSAPLHAAGSEPVRLE-LSPSGDSLAVSFG-SDLKVFASEDGKD 364 (420)
T ss_pred EecCCcEEEeeccceEecCC---------CchHhhcCCcchhhcCCCceEEE-eCCCCcEEEeecC-CceEEEEcccCcc
Confidence 87 99999999865421100 00111111 1122222344777 8999999987654 5799999999987
Q ss_pred eEeec-ccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 310 VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 310 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
...+. .|...|.+++|+++|++++|++ |..+++..-
T Consensus 365 ~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred chhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 76665 5889999999999999999997 677887763
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=1.6e-29 Score=193.42 Aligned_cols=293 Identities=13% Similarity=0.186 Sum_probs=231.3
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+++|+.+++.+.|+. +|++|++++.|.+..+|--.+++.+ -.+.+|++.|+|+....+.++ +++|+.|.++++||
T Consensus 6 l~GHERplTqiKyN~--eGDLlFscaKD~~~~vw~s~nGerl--Gty~GHtGavW~~Did~~s~~-liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNR--EGDLLFSCAKDSTPTVWYSLNGERL--GTYDGHTGAVWCCDIDWDSKH-LITGSADQTAKLWD 80 (327)
T ss_pred cccCccccceEEecC--CCcEEEEecCCCCceEEEecCCcee--eeecCCCceEEEEEecCCcce-eeeccccceeEEEE
Confidence 579999999999999 9999999999999999988778777 558999999999999999885 66999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-----CceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
+++++.+..+.. ..+|..+.|++.+ ++++.... .+.|.++|++.... ......|
T Consensus 81 v~tGk~la~~k~------------~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~--------~~~s~ep 139 (327)
T KOG0643|consen 81 VETGKQLATWKT------------NSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSS--------DIDSEEP 139 (327)
T ss_pred cCCCcEEEEeec------------CCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChh--------hhcccCc
Confidence 999999988873 6679999999987 66665543 46799999985331 0111122
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
...+..+...++.+.|.|-++++++|. +|.|.+||++++. +.+..-..|.. .|+.+. ++++
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---------------~~v~s~~~h~~--~Ind~q-~s~d 201 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---------------ELVDSDEEHSS--KINDLQ-FSRD 201 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------------eeeechhhhcc--cccccc-ccCC
Confidence 333355678899999999999999997 9999999999873 23333344555 499999 8999
Q ss_pred CceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeE--------------EEeccC-CCCC
Q 013644 287 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTV--------------KLWAPM-PTDF 351 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i--------------~iw~~~-~~~~ 351 (439)
..++++++.|.+-++||..+.++++++.. ..||++.+++|....++.|+.-... ++|++- ..+.
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 99999999999999999999999999874 5799999999987776666532211 222221 2234
Q ss_pred CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 352 PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
..+.+|.+++..+. +++++....+++.||.|++..+...
T Consensus 281 grvkGHFGPINsvA-fhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 281 GRVKGHFGPINSVA-FHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccccccCcceeE-ECCCCcccccCCCCceEEEEEeccc
Confidence 55667888887666 6778888889999999998866543
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.2e-30 Score=214.33 Aligned_cols=247 Identities=22% Similarity=0.287 Sum_probs=202.0
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.+++.-....|.++.|-.||++||.|+..|.|+|+|+.+ +.+.+.+.+|+.++..+.|+|. ++..|++|+.|+.+++|
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEeccc-CCeEEEecCCCceEEEE
Confidence 344555678899999999999999999999999999655 4455557899999999999994 66778889999999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|+.+... ...+.+|++.|.|.+|+|...+++++|+.||.|++||++.. ..+..+. |..+|..+.+
T Consensus 139 d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln------------hg~pVe~vl~ 204 (487)
T KOG0310|consen 139 DLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN------------HGCPVESVLA 204 (487)
T ss_pred EcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec------------CCCceeeEEE
Confidence 9977653 46789999999999999999999999999999999999987 4444443 7888999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN 244 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~ 244 (439)
-|.| .++++++. ..+++||+.++.. .......|...|+|+.+..++..|++++ |+.+++||+.
T Consensus 205 lpsg-s~iasAgG-n~vkVWDl~~G~q--------------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 205 LPSG-SLIASAGG-NSVKVWDLTTGGQ--------------LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred cCCC-CEEEEcCC-CeEEEEEecCCce--------------ehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 9976 67777764 5899999996652 2222345899999999999999999888 9999999975
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
+- +...+-..+.+|.+++ .+|+++.++.|..||.+.+-+..
T Consensus 269 ~~-------------------Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 269 NY-------------------KVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ce-------------------EEEEeeecccceeeEE-ecCCCceEEEecccceeeeehhh
Confidence 43 3333334445699999 89999999999999998877543
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=9.2e-30 Score=197.58 Aligned_cols=307 Identities=18% Similarity=0.228 Sum_probs=230.4
Q ss_pred eccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCcc------e----e----eeecCCcccEEEEEEeecCCCcEEE
Q 013644 11 HGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRRE------K----F----SYLSGHLDNIFQTRIMPFTDDRKII 75 (439)
Q Consensus 11 ~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~------~----~----~~~~~h~~~v~~~~~~~~~~~~~l~ 75 (439)
+-|.+.|+++...+ .|+|+++|+.||.|.+||++.... + . ....+|+-.|..+.|.|. |...+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCceee
Confidence 46899999999988 789999999999999999976431 0 1 112467888999999996 778889
Q ss_pred EecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCC--cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 76 TSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSP--YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 76 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+++.|.++++||..+.+....+. ..+.|.+-+++|-.. .++++|..+-.|++-|+..|.....+..
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG--------- 186 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG--------- 186 (397)
T ss_pred cccccceEEEeecccceeeEEee---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc---------
Confidence 99999999999998877654443 447788888888432 3778888899999999999998888876
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc-ccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
|...|.++.|+|.....|++|+.||.|++||++... +...+....... .+.......|.+.+..++|+.++.++++
T Consensus 187 --Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 --HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-PPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred --ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-Cccccccccccceeeeeeecccchhhhh
Confidence 788899999999988899999999999999998752 222111111111 1111234678999999999999999988
Q ss_pred ec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE
Q 013644 233 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 311 (439)
Q Consensus 233 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 311 (439)
.+ |..+++|+...+........+. ...-+.+.. ..+.+ .+...++---.++.+.++++-.+..+.
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~g~~--------~~n~~~~~~-~~~~~-----~~s~vfv~~p~~~~lall~~~sgs~ir 329 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREFGPI--------IHNQTTSFA-VHIQS-----MDSDVFVLFPNDGSLALLNLLEGSFVR 329 (397)
T ss_pred ccCccceEEeecccCcccccccccc--------cccccccce-EEEee-----cccceEEEEecCCeEEEEEccCceEEE
Confidence 86 9999999998874332111100 000000100 01221 222333333345899999999999999
Q ss_pred eecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 312 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 312 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.+..|-..|.|.++-|+-+...++..|+.|..|.+.
T Consensus 330 ~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 330 RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 999998899999999999999999999999999984
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1e-30 Score=217.76 Aligned_cols=312 Identities=13% Similarity=0.113 Sum_probs=229.8
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee---eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM---DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
+.+|+..|.++++.| .|..|++|+.|.+|++||+...... ...........|+++.|++.+..+| +.+.....+
T Consensus 163 l~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL-vvsg~aqak 239 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL-VVSGSAQAK 239 (641)
T ss_pred ccCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE-EEecCccee
Confidence 568889999999999 9999999999999999999654321 1112334567899999999998655 566677899
Q ss_pred EEEccCCCceeeEEeeccC-CCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFS-ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
++|-.............+- ......+|-..++|.+|+|.+...|++++.||++++||+...+. ..+.+.++
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------q~qVik~k 311 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------QLQVIKTK 311 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--------heeEEeec
Confidence 9997665555444433322 12334568899999999999999999999999999999987541 11111111
Q ss_pred ccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
...+...+++.++|+++|+++|++. ||.|.+|+..... .......-.+|.....|+++. ||++|
T Consensus 312 -~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-------------v~p~~~vk~AH~~g~~Itsi~-FS~dg 376 (641)
T KOG0772|consen 312 -PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-------------VRPVMKVKDAHLPGQDITSIS-FSYDG 376 (641)
T ss_pred -cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc-------------cccceEeeeccCCCCceeEEE-ecccc
Confidence 1135567899999999999999886 9999999985431 112334556788766799999 89999
Q ss_pred ceEEEeCCCCeEEEEecCCC-ceeEeecccc--cceEEEeecCCCcEEEEEec------CCeEEEeccCCCCC-CCCCCc
Q 013644 288 EYVMSGSDCGHLFIWKKKGG-KLVRLMVGDR--HVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF-PPLPDN 357 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~-~~~~~~ 357 (439)
++|++-+.|+++++||++.. +++....+-. -+-+.++|||+.++|++|.. .|.+.+|+..+-.. ..+.-.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 99999999999999999875 4555544432 35678999999999999864 57899999876554 333333
Q ss_pred hhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 358 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
...|.... |++.-..++.++.||.++++--++.
T Consensus 457 ~aSvv~~~-WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 457 TASVVRCL-WHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred CceEEEEe-ecchhhheeeecCCCceEEEECccc
Confidence 44454444 5555667888899999998754443
No 100
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.6e-29 Score=220.94 Aligned_cols=208 Identities=15% Similarity=0.207 Sum_probs=162.9
Q ss_pred eeeccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCc------ceeeeecCCcccEEEEEEeecCCC-cEEEEecCC
Q 013644 9 KLHGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRR------EKFSYLSGHLDNIFQTRIMPFTDD-RKIITSSAD 80 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d 80 (439)
.+.||.+.|++++|+| ++++|++|+.|++|++||+.++. .....+.+|...|.+++|+| ++ ++|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P--~~~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHP--SAMNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCc--CCCCEEEEEeCC
Confidence 5789999999999999 88999999999999999997653 12334679999999999999 64 699999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee-e
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI-R 159 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (439)
++|+|||+.++... ..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.. |.. .
T Consensus 148 gtVrIWDl~tg~~~--~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~-----------H~~~~ 213 (493)
T PTZ00421 148 MVVNVWDVERGKAV--EVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEA-----------HASAK 213 (493)
T ss_pred CEEEEEECCCCeEE--EEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEec-----------CCCCc
Confidence 99999999887654 45788999999999999997 688999999999999999887665543 222 2
Q ss_pred eEEEeecCCCCcEEEEe---ecCceEEEEeCcCCcccCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCEEEEec-
Q 013644 160 LNAIVIDPRNPNYFAVG---GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYN- 234 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~- 234 (439)
...+.|.+++..++.+| +.|+.|++||+++... +.... ......+....|++++.+|++++
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--------------p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--------------PYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--------------ceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 44667888764444444 2478999999986541 11111 12234466677899998877663
Q ss_pred -CCeEEEEEccCC
Q 013644 235 -DELVYLFEKNMG 246 (439)
Q Consensus 235 -d~~i~i~d~~~~ 246 (439)
|+.|++||+..+
T Consensus 280 gDg~Iriwdl~~~ 292 (493)
T PTZ00421 280 GEGNIRCFELMNE 292 (493)
T ss_pred CCCeEEEEEeeCC
Confidence 999999999876
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.4e-30 Score=227.86 Aligned_cols=278 Identities=18% Similarity=0.253 Sum_probs=230.0
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
+...+.+..|. +.++++++.+.+|++|+..++..+ ...+.+|.+.|+++++...+ .++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~----~~~~~~~s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH----DGFFKSGSDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee----cCeEEecCCCceeEEeecccceEE-EeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCC
Confidence 45567777775 578999999999999999876655 23488999999999998744 4788999999999999999
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
+++...+.. |...+.++...+ ..+++|+.|.+|++|++.++..+ .++.+|.
T Consensus 281 g~C~~~l~g-----------h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l---------------~l~~~h~ 331 (537)
T KOG0274|consen 281 GECTHSLQG-----------HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL---------------NLLRGHT 331 (537)
T ss_pred CcEEEEecC-----------CCceEEEEEccC---ceEeeccCCceEEEEeccCcceE---------------EEecccc
Confidence 999999875 677799998876 68889999999999999987632 2335599
Q ss_pred ccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC
Q 013644 216 IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~ 294 (439)
.+|.++..+ +.++++++ |+.|++|++.++ +.+..+.+|... |.++. +.+. ..+++|+
T Consensus 332 ~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------------~cl~sl~gH~~~--V~sl~-~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 332 GPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------------KCLKSLSGHTGR--VYSLI-VDSE-NRLLSGS 389 (537)
T ss_pred ccEEEEEec--CCEEEEEecCceEEEEEhhhc----------------eeeeeecCCcce--EEEEE-ecCc-ceEEeee
Confidence 999999998 66777776 999999999877 799999999886 99887 4443 9999999
Q ss_pred CCCeEEEEecCCC-ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCC-chhhhhhhhccccCc
Q 013644 295 DCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGRED 371 (439)
Q Consensus 295 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~-~~~~~~~~~~~~~~~ 371 (439)
.|+.|++||+.+. +++..+.+|...+..+.+ .+++|++++.|+.|++||..+++. ..+.+ +...+..... ..
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~---~~ 464 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL---GK 464 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeec---Cc
Confidence 9999999999999 999999999998877665 567999999999999999987765 45554 3444443332 24
Q ss_pred ceEEEeCCCcEEEEEEecccceee
Q 013644 372 HSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 372 ~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
..+++.+.||++.+|++++++...
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ceEEEEecCCeeEEEecccCchhh
Confidence 578889999999999999997764
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.7e-29 Score=216.55 Aligned_cols=331 Identities=17% Similarity=0.217 Sum_probs=253.9
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee--ecCCcccEEEEEEeecC---------CCcEEEEecCCCcEEE
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY--LSGHLDNIFQTRIMPFT---------DDRKIITSSADGQVRL 85 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--~~~h~~~v~~~~~~~~~---------~~~~l~s~~~dg~i~i 85 (439)
-.++.|+|....|...-.|..++|||+..-..+.+. +.-|...|+.+.-.|.+ ....+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 347889999999999999999999999876544322 23688888888776621 1245899999999999
Q ss_pred EEcccCce--eee-E--------------------------------EecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 86 GQIFEDGR--MDT-K--------------------------------RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 86 w~~~~~~~--~~~-~--------------------------------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
|++..... +.. . ..-.....+.+++.+|++++ |++|..-|.+++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh-LAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH-LASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce-ecccCccCceEE
Confidence 99964211 100 0 00113346899999999995 789999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC--CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
|++...+....+.. |...|.|+.|+.. +..+||+++.|..|.+||.... +.+.
T Consensus 486 y~Lq~l~~~~~~eA-----------HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------------y~l~ 540 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEA-----------HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------------YDLV 540 (1080)
T ss_pred EEehhhhhhhheec-----------ccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------------cchh
Confidence 99998777666654 7888999999753 3468999999999999998753 3555
Q ss_pred ccccCCCccEEEEEEccCC--CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC---CcceeeeEEe
Q 013644 209 HLIGKNNIHITGLAYSNTS--ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVNF 282 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~ 282 (439)
..+.+|...|+++.|.-+| ..+++++ |..|.+--.+.. .....+..|. ...++..+.
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~----------------~~g~~f~r~t~t~~ktTlYDm~- 603 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA----------------SSGRLFPRHTQTLSKTTLYDMA- 603 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc----------------cCceeccccccccccceEEEee-
Confidence 6668999999999998877 4555555 665544332211 1112222221 234588888
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCceeEeecc---cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCch
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA 358 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~ 358 (439)
..|..+++++++.|..|+||++++++..+.|++ |.+....+...|.|.|||+...|.++.++|+.+++. ..+.+|.
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 899999999999999999999999999999975 556788899999999999999999999999988776 7888898
Q ss_pred hhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 359 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
..|..+. +..+-+.+++.+.||-|.+|.+...
T Consensus 684 E~VTG~k-F~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 684 EAVTGVK-FLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hheeeee-ecccchhheeecCCceEEEEECchh
Confidence 8876665 5667788999999999999999654
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.4e-28 Score=180.44 Aligned_cols=292 Identities=17% Similarity=0.212 Sum_probs=220.2
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc------cC----c---eeeeEEecCCCCceEEEEEccCCCcEEEE
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF------ED----G---RMDTKRLGKHQGRVYKLAVEPGSPYIIYS 121 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~------~~----~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 121 (439)
.....|.+++|+| .|.+.+.|+...+++|.... .. . .+..+.-+.|.+.|.|.+|+|+|. ++++
T Consensus 30 ~dsqairav~fhp--~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP--AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIAT 106 (350)
T ss_pred cchhheeeEEecC--CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEe
Confidence 4556899999999 99999999999999986432 11 1 122234556899999999999998 8999
Q ss_pred eCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC---CCcEEEEee-cCceEEEEeCcCCcccCCCC
Q 013644 122 CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGG-SDEYARVYDIRKCHWYSPIS 197 (439)
Q Consensus 122 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 197 (439)
|+.|.+|++...+...+...-... ....|.+.|..++|..+ ++.+|++++ .|..|++-|...++.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dl------e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~----- 175 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDL------EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG----- 175 (350)
T ss_pred cCCCceEEEEecccccccccCcce------eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-----
Confidence 999999999877654332211111 11237888999999643 446677665 466777778776652
Q ss_pred CCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeC--C---
Q 013644 198 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--H--- 271 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 271 (439)
.+.+.+|.+.|.++ ++-+|-++++++ |.+|++||++-+ ..+.++.. |
T Consensus 176 ----------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 176 ----------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGG 228 (350)
T ss_pred ----------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc----------------ceeeeccCcccCCC
Confidence 23337888888776 455678889987 999999999865 23333321 1
Q ss_pred CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 272 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 272 ~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
-....|.+++ ..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+|...||++++.|..|++=|+.+...
T Consensus 229 lessavaav~-vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 229 LESSAVAAVA-VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred cccceeEEEE-ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 1224588888 899999999999999999999999999999999999999999999999999999999999999976544
Q ss_pred CCCC-----CchhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 352 PPLP-----DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 352 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
..++ .|...++... |+...-..++.|.|.++.+|-+.
T Consensus 308 ~el~~~vv~ehkdk~i~~r-wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCR-WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEE-ecCccceeeeccCcceEEEeccC
Confidence 4433 4666666555 45566678899999999999763
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=204.67 Aligned_cols=254 Identities=20% Similarity=0.302 Sum_probs=206.2
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
-+++.+|+||...|+.+.|+|+...+++++.|..|+||.......... ...|.++|+.+..+| .|.||++++.|++.
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-~~~h~~~V~~ls~h~--tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-SRPHEEPVTGLSLHP--TGEYLLSASNDGTW 327 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc-cccccccceeeeecc--CCcEEEEecCCceE
Confidence 356788999999999999999999999999999999999877765443 579999999999999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
.+.|++++..+....-....-.+++.+|+|||- +|.+|..|+.|++||+..+.....+.. |.++|..+
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpg-----------ht~~vk~i 395 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPG-----------HTGPVKAI 395 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCC-----------CCCceeEE
Confidence 999999988775544333334689999999996 899999999999999998876555543 78899999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
+|+.+| .+|++++.|+.|++||+|..+....+ .......+.++.|.+.|.+|+.++ +=+|++++
T Consensus 396 ~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~--------------~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 396 SFSENG-YWLATAADDGSVKLWDLRKLKNFKTI--------------QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EeccCc-eEEEEEecCCeEEEEEehhhccccee--------------eccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 999976 99999999999999999986633221 122334799999999999999885 65677666
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
-.+. .+.....+..|.+. .+++. |....+++++++.|..++++.+
T Consensus 461 k~~k--------------~W~~~~~~~~~sg~--st~v~-Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTK--------------SWTEIKELADHSGL--STGVR-FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccc--------------cceeeehhhhcccc--cceee-ecccceEEeeccchhheEEeec
Confidence 4432 23445555555533 56666 8889999999999999888764
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=210.53 Aligned_cols=356 Identities=15% Similarity=0.186 Sum_probs=263.5
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCC-cce---eeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDR-REK---FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
.+.+.+|.+.|.-+. |=|.+++++..++.+.||+..+. .+. ..+++.....|+++. +|.+-=+.++.|+.+|.
T Consensus 107 ~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~ 183 (910)
T KOG1539|consen 107 RHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGR 183 (910)
T ss_pred EEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCc
Confidence 445666776776665 34788999999999999998874 221 122233333377764 55345567899999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
+++|++++++.+ ..++++...|+++.-+|-=. +++.|..+|+|.+++++.++.+..+.. ..++|++
T Consensus 184 lql~Nvrt~K~v--~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dkil~sFk~-----------d~g~Vts 249 (910)
T KOG1539|consen 184 LQLWNVRTGKVV--YTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKILMSFKQ-----------DWGRVTS 249 (910)
T ss_pred EEEEEeccCcEE--EEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCcEEEEEEc-----------cccceeE
Confidence 999999999887 55888899999999999765 789999999999999999999888873 2478999
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
++|..||..++++|+..|.+.+||+...+... .....|.+.+..+.|.|....+++.+ |+.+++|
T Consensus 250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~--------------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN--------------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEeccCCCeeEEeccCCceEEEEEcCCCeeee--------------eeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99999998999999999999999999876432 22246777888888888888888776 7776666
Q ss_pred EccCCCCC--------------CCCCCCccc-------------------------------------------------
Q 013644 242 EKNMGLGP--------------SPLSLSPED------------------------------------------------- 258 (439)
Q Consensus 242 d~~~~~~~--------------~~~~~~~~~------------------------------------------------- 258 (439)
=.+++.+. ..+.+....
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 55533210 000000000
Q ss_pred ---------------------------------cccccc-ceeEeCC---CCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 259 ---------------------------------LQKREE-PQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 259 ---------------------------------~~~~~~-~~~~~~~---~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
.++... ...+... .....+++++ .++.|++.+.|+..|.|-+
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~-vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC-VSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE-EeccCceEEEeccCCeEEE
Confidence 000000 0001100 0223478888 8999999999999999999
Q ss_pred EecCCCceeEee---cccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC-C------------------------
Q 013644 302 WKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-P------------------------ 353 (439)
Q Consensus 302 wd~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-~------------------------ 353 (439)
|++++|-....+ ..|.++|+.++...-++.+++++.+|-+++|+.....+. .
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 999999998888 589999999999888899999999999999998765421 1
Q ss_pred -----------------CCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 354 -----------------LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 354 -----------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+.+|...+.... ++++++++++.+.|++|++||+.++...-
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 114444444443 67789999999999999999999987654
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-29 Score=211.15 Aligned_cols=287 Identities=19% Similarity=0.258 Sum_probs=232.7
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc--eeeee--cCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE--KFSYL--SGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
.+.+| .|..-|.++.+|...+++.||+. |.|+|||+..... ....+ ....+.|.++..+| |++.|++|+.-.
T Consensus 412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeas 487 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEAS 487 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccc
Confidence 34444 48888999999999999999986 8899999965421 11111 12456789999999 999999999999
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
++.|||+..........+.........++.+||.+ +.+++..||.|.|||+.+...++.+.. |...+.
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqG-----------htDGas 555 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQG-----------HTDGAS 555 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccC-----------CCCCce
Confidence 99999998765544444554455677899999998 677999999999999999988888766 677899
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 240 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i 240 (439)
|+.++++| ..|.+|+-|.+||.||++.+..+.. ......|.++.++|++.++++|- ++.+.+
T Consensus 556 cIdis~dG-tklWTGGlDntvRcWDlregrqlqq----------------hdF~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 556 CIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQ----------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eEEecCCC-ceeecCCCccceeehhhhhhhhhhh----------------hhhhhhheecccCCCccceeeecccCcEEE
Confidence 99999988 8999999999999999998763221 22367799999999999999996 888888
Q ss_pred EEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccce
Q 013644 241 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 320 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 320 (439)
...... ..+.-|....-|.++. |.+.|+++++.+.|+.+..|.+.-|..+...+ ....|
T Consensus 619 lh~skp-------------------~kyqlhlheScVLSlK-Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsV 677 (705)
T KOG0639|consen 619 LHTSKP-------------------EKYQLHLHESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSV 677 (705)
T ss_pred EecCCc-------------------cceeecccccEEEEEE-ecccCceeeecCchhhhhhccCccccceeecc-ccCcc
Confidence 877543 3334444444599999 89999999999999999999999888877665 35789
Q ss_pred EEEeecCCCcEEEEEecCCeEEEecc
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
.++.+|.|.++++||+.|....+|.+
T Consensus 678 lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 678 LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999998888875
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.1e-29 Score=203.66 Aligned_cols=291 Identities=13% Similarity=0.167 Sum_probs=230.5
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-eeeecCCcccEEEEEEeecCCCc-EEEEecCCCcEEEEEcccC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FSYLSGHLDNIFQTRIMPFTDDR-KIITSSADGQVRLGQIFED 91 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~ 91 (439)
.+.|++|.|+|....|++|+.|++++||.++..... .+.+.-...+|.+.+|.| +|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC--CCceEEEecccceEEEEeecccc
Confidence 478999999999999999999999999998765322 222234457899999999 888 8899999999999999888
Q ss_pred ceeeeEEecCCC-CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 92 GRMDTKRLGKHQ-GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 92 ~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
+........++. ..+.....+|+++ +++..|..|.|.+....+++.+..+.. .+.|..++|+.++
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Ki------------eG~v~~~~fsSds- 356 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKI------------EGVVSDFTFSSDS- 356 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeee------------ccEEeeEEEecCC-
Confidence 776666666655 4567888999998 677999999999999999998888764 6679999999887
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGP 249 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 249 (439)
..|++.+.+|.|.+||++... +...........-++++.++++.+||+|+ .|.|.|||.++....
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~--------------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNS--------------CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred cEEEEEcCCceEEEEecCCcc--------------eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 777777888999999999875 33333344444567888899999999998 899999997654211
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC--CCeEEEEecCCCceeEeecccc---cceEEEe
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLMVGDR---HVVNQLE 324 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h~---~~v~~~~ 324 (439)
.. .+++..+..-.. .|+++. |+++.+.||.++. +..+++-.+.+......+.... +.|+||+
T Consensus 423 ~~----------PkPik~~dNLtt--~Itsl~-Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 423 TN----------PKPIKTVDNLTT--AITSLQ-FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMA 489 (514)
T ss_pred CC----------CCchhhhhhhhe--eeeeee-eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEE
Confidence 10 123333333332 389999 8999999988875 6789999988877776665433 5799999
Q ss_pred ecCCCcEEEEEecCCeEEEeccC
Q 013644 325 PHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 325 ~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
|||.+.+||.|..+|.+.+|.+.
T Consensus 490 FSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999874
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.3e-30 Score=218.39 Aligned_cols=290 Identities=14% Similarity=0.194 Sum_probs=224.2
Q ss_pred EEEEeecCCCcEEEEecCCCcEEEEEcccCcee----eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC
Q 013644 62 QTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM----DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS 137 (439)
Q Consensus 62 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 137 (439)
.+..++ +++++|++|+.||.|++|++...... ....+..|.+.|+.++...+++ .|++++.|-+|++|+...+.
T Consensus 29 ~Lq~da-~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDA-PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccC-CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence 344443 37788999999999999998754432 2456788999999999999998 47799999999999998873
Q ss_pred --ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcc--cCCCCCCCCcccccccccccC
Q 013644 138 --ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW--YSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 213 (439)
+...+.. |...|.|+++-..+..++|+|+-|+.|.+||+.++.. +.... .........+
T Consensus 107 ~~c~stir~-----------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------~~t~~sl~sG 169 (735)
T KOG0308|consen 107 TFCMSTIRT-----------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN------NVTVNSLGSG 169 (735)
T ss_pred chhHhhhhc-----------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc------ccccccCCCC
Confidence 3444433 7888999999333448999999999999999998732 11111 1111222237
Q ss_pred CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 214 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
+...|++++.++.|..+++|+ .+.+++||.++. +....+.+|... |..+. .++||..+++
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~----------------~kimkLrGHTdN--Vr~ll-~~dDGt~~ls 230 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC----------------KKIMKLRGHTDN--VRVLL-VNDDGTRLLS 230 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccc----------------cceeeeeccccc--eEEEE-EcCCCCeEee
Confidence 888999999999999999887 999999999988 677888999987 88888 8999999999
Q ss_pred eCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC-CCCCCCchhhhhhhhccccCc
Q 013644 293 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRED 371 (439)
Q Consensus 293 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 371 (439)
++.||+|++||+...+++.++..|...|+++..+|+-..+++|+.||.|..=++.+.. ...+.....++........+.
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~ 310 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN 310 (735)
T ss_pred cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC
Confidence 9999999999999999999999999999999999999999999999999998887743 222222333343333222222
Q ss_pred ceEEEeCCCcEEEEEEecc
Q 013644 372 HSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 372 ~~~~~~s~dg~v~~w~~~~ 390 (439)
. .-..+.|+.|+-|...-
T Consensus 311 ~-~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 311 S-VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred C-ceeeeccccceecCCcc
Confidence 2 24456678888887643
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=190.84 Aligned_cols=256 Identities=15% Similarity=0.262 Sum_probs=203.5
Q ss_pred eeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
-..|.+.|..+...-.|+.|||++.|++|+|+.+.+.. .+...+.+|.++|+.++|....-|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 45799999999999999999999999999999998765 4555678999999999997545799999999999999999
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCC-cEEEEeCCCCcEEEEEccCCC---ceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSP-YIIYSCGEDGFVQHFDLRSDS---ATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
-.+++.........|...|++++|.|.+- .+|++++.||.|.+.+.+... ..++..+ |...|+++
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a-----------H~~GvnsV 155 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA-----------HEIGVNSV 155 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-----------ccccccee
Confidence 98886665566778999999999999642 368889999999999988751 1122222 67789999
Q ss_pred eecCC---C----------CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC---
Q 013644 164 VIDPR---N----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--- 227 (439)
Q Consensus 164 ~~~~~---~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 227 (439)
+|.|. | .+.|++|+.|..|+||+....+. .....+.+|...|+.++|.|.-
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-------------~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-------------KLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-------------hhhhhhhhcchhhhhhhhccccCCC
Confidence 99986 2 14699999999999999988643 3334468999999999999974
Q ss_pred -CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 228 -ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 228 -~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
..+++++ ||++.||.......+ -....+.. -+..+..+. ||+.|+.|+.++.|+.|.+|.-.
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~-------------wk~tll~~--f~~~~w~vS-WS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEP-------------WKKTLLEE--FPDVVWRVS-WSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCc-------------cccccccc--CCcceEEEE-EeccccEEEEecCCcEEEEEEeC
Confidence 4778887 999999987643211 11112222 223488888 89999999999999999999743
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=216.00 Aligned_cols=286 Identities=15% Similarity=0.208 Sum_probs=226.8
Q ss_pred eccccceEEEEECCCCCEEEEecCCCeEEEEeCCCC-cceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDR-REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
-+|+..-+.|+|.|+|.+|++++.||.|++|+..+. ..... +..+...|.+++. .+.+|++++.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-i~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-IDISGELVSSIAC----YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch-hhccCceeEEEee----cccceEEeeccceEEEeeCC
Confidence 368999999999999999999999999999998776 33333 2337778888776 45699999999999999998
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
+++.- ..+...+-++++++|+.+|+ +++.|+.|-.|++.++........+.. |..+|.++.|+|.+
T Consensus 85 s~~~~--~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrg-----------h~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 85 SGEED--TILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRG-----------HDAPVLQLSYDPKG 150 (933)
T ss_pred CCCcc--ceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecc-----------cCCceeeeeEcCCC
Confidence 77654 23555678999999999998 688999999999999998888777765 78889999999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEecCCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~d~~i~i~d~~~~~~ 248 (439)
++||+.+.||.|++||+.++.+...+..-.+...+ .....+..++|+|+| .+++.+.|+.|++|+..+.
T Consensus 151 -~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-- 220 (933)
T KOG1274|consen 151 -NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-- 220 (933)
T ss_pred -CEEEEEecCceEEEEEcccchhhhhcccCCccccc-------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCc--
Confidence 89999999999999999998876655433322222 114567889999995 6666667999999998877
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
.....+........+..+. |+|+|+|||+++.||.|.|||.++.+. ......|.+++|.|+
T Consensus 221 --------------e~~f~Lr~~~~ss~~~~~~-wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 221 --------------ELQFKLRDKLSSSKFSDLQ-WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred --------------eeheeecccccccceEEEE-EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence 4556666655554577888 899999999999999999999998332 222368999999999
Q ss_pred CcEEEEEecCCeEEEe
Q 013644 329 IPMFATCGIEKTVKLW 344 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw 344 (439)
.+.+-....-|...+|
T Consensus 282 ~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 282 ANAITLITALGTLGVS 297 (933)
T ss_pred CCeeEEEeeccccccC
Confidence 8876555555554444
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=205.52 Aligned_cols=284 Identities=13% Similarity=0.221 Sum_probs=218.0
Q ss_pred ecCCcccEEEEEEeecCCC-cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDD-RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
+.+|.+.|.+++=+| .. ..+++|+.||.|++||+.+..+. ..+..|.+.|..|++.. + -+++++.|.+|+.|
T Consensus 62 L~gHrdGV~~lakhp--~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~AH~G~V~Gi~v~~-~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHP--NKLSTVASGSCDGEVKIWNLSQRECI--RTFKAHEGLVRGICVTQ-T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCc--chhhhhhccccCceEEEEehhhhhhh--heeecccCceeeEEecc-c--ceEEecCCcceeee
Confidence 579999999999998 55 78999999999999999876665 56889999999999987 2 35699999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
-+... ....+.+ ...+..+.-+..+ ..++++++ .|.|||......+ +.+
T Consensus 135 k~~~~-p~~tilg------------~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv---------~sm------ 183 (433)
T KOG0268|consen 135 KIDGP-PLHTILG------------KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPV---------SSM------ 183 (433)
T ss_pred eccCC-cceeeec------------ccccccccccccc-ccccccCc--eeeecccccCCcc---------cee------
Confidence 98763 4444432 3345566655544 78888886 6999998764422 221
Q ss_pred cCCCccEEEEEEccCC-CEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 212 GKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
.-....|.++.|+|.. .+|+++ +|+.|.+||++... +++.+.-... -+.++ |+|.+-.
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~----------------Pl~KVi~~mR---TN~Is-wnPeafn 243 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS----------------PLKKVILTMR---TNTIC-WNPEAFN 243 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccCC----------------ccceeeeecc---cccee-cCccccc
Confidence 3345678999999986 566666 59999999999873 3333222211 35566 8998888
Q ss_pred EEEeCCCCeEEEEecCCC-ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCC--Cchhhhhhhhc
Q 013644 290 VMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANK 366 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~ 366 (439)
+++|++|..++.||+... .++....+|.+.|.++.|||.|+-+++||.|.+|+||....+.-...- .....|..+.
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk- 322 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK- 322 (433)
T ss_pred eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE-
Confidence 999999999999998865 467788899999999999999999999999999999999876543322 1122333333
Q ss_pred cccCcceEEEeCCCcEEEEEEecccceee
Q 013644 367 QGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 367 ~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
++.+..+++++|.|+.|++|.....+.+.
T Consensus 323 ~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 323 YSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EeccccEEEecCCCcceeeeecchhhhcC
Confidence 67788999999999999999987776654
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=210.28 Aligned_cols=309 Identities=20% Similarity=0.281 Sum_probs=220.3
Q ss_pred EEEECC---CCCEEEEecCCCeEEEEeCCCCcce-----eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 19 AVEFNS---TGDFLVSGSDDKLVIFWDWKDRREK-----FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 19 ~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
+..|++ ....|+.+..||.|.++|.....-. ......|.+.|..+.|.| ....|++++.|.++++||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeecc
Confidence 366765 3467999999999999998654321 234468999999999999 889999999999999999998
Q ss_pred CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCcee-------eEEeecc--CC-------CCCCC
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATR-------LFYCSSF--SE-------NSKQP 154 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~--~~-------~~~~~ 154 (439)
.+..-...+.+|...|.+++|.|.++.+|++|+.||.|.|||++....-. ....... .+ .....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 88776666889999999999999999999999999999999998654110 0000000 00 00112
Q ss_pred CceeeeEE---EeecCCCCcEEEEeec-CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE-
Q 013644 155 MNSIRLNA---IVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL- 229 (439)
Q Consensus 155 ~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 229 (439)
.+...|.+ +.+..|+ ..||+++. |+.|++||+++............ ..+. ........+.++.....|.+
T Consensus 212 A~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~-~~~~---t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGS-DKYP---THSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcc-cCcc---CcccceeeeEEEEecCCCCeE
Confidence 23333443 4444444 68888777 99999999998664332211110 0000 00122446777888777755
Q ss_pred EEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc-
Q 013644 230 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK- 308 (439)
Q Consensus 230 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~- 308 (439)
+|.+.|+.|+.|++.... ..+...+.++........-. .+|++.++++|+.|...++|.+.+.+
T Consensus 287 ~AsCtD~sIy~ynm~s~s--------------~sP~~~~sg~~~~sf~vks~-lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLS--------------ISPVAEFSGKLNSSFYVKSE-LSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCcEEEEeccccC--------------cCchhhccCcccceeeeeee-cCCCCceEeccCCCcceeeeeecCccC
Confidence 555679999999997642 23445556655443222222 78999999999999999999998765
Q ss_pred eeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCC
Q 013644 309 LVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 309 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 349 (439)
....+.+|.-.|++++|.|... -+++++.|.+++||++..+
T Consensus 352 ~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 4567789999999999987543 3677899999999998554
No 113
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.3e-28 Score=212.25 Aligned_cols=352 Identities=18% Similarity=0.223 Sum_probs=258.4
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCccee----e--eecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKF----S--YLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~----~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
.+.||.+-|+++.|+|.+..|++++.|.++.+|...+...+- + ...+.....+...|+| +++.+++-+..|.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGG 339 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCc
Confidence 356999999999999999999999999999999987653221 1 1234456689999999 9999999999999
Q ss_pred EEEEEccc-CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFE-DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.++|...+ ........+.+|.+.|..++|+|.|.+ |++.+.|.+-|++-.-..+.. . .+....+.|...++
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~--w-----HEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQE--W-----HEIARPQIHGYDLT 411 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccc--e-----eeecccccccccce
Confidence 99998332 223334457899999999999999995 669999999999865522221 1 11223345888899
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcc-----------cCC-------------CCC-------------------
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-----------YSP-------------ISS------------------- 198 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~-------------~~~------------------- 198 (439)
|++|-+. ...|++|.....+|+|+....-. ... +..
T Consensus 412 c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 412 CLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999985 37899999999999998653200 000 000
Q ss_pred ----CCCcc--------------cccccccccCCCccEEEEEEccCCCEEEEec------CCeEEEEEccCCCCCCCCCC
Q 013644 199 ----DTPVD--------------TFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 199 ----~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~ 254 (439)
..|.. .++..+.+.+|...|.+++.+|+++++|++. -..|++|+..+.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-------- 562 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-------- 562 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--------
Confidence 00000 0111224567999999999999999999974 236999998876
Q ss_pred CcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc----eeEeecccccceEEEeecCCCc
Q 013644 255 SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHIP 330 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~s~~~~ 330 (439)
...+.+.+|.-. |+.++ |||||++|++.+.|.++.+|...... .....+.|..-|.+..|+|++.
T Consensus 563 --------~~~~~L~~HsLT--VT~l~-FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~ 631 (764)
T KOG1063|consen 563 --------LQVQELEGHSLT--VTRLA-FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK 631 (764)
T ss_pred --------hhhheecccceE--EEEEE-ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc
Confidence 566678888875 99999 89999999999999999999875432 2344678999999999999999
Q ss_pred EEEEEecCCeEEEeccCCCCCC-----CCCCchhhhhhhhcccc---Ccc-eEEEeCCCcEEEEEEecc
Q 013644 331 MFATCGIEKTVKLWAPMPTDFP-----PLPDNAEKIMKANKQGR---EDH-SRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 331 ~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~-~~~~~s~dg~v~~w~~~~ 390 (439)
++||+|.|.+|++|........ ........+..+...+. +.. .++.+-..|.|.+|+.++
T Consensus 632 ~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 632 YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 9999999999999998766221 12223444444443322 233 455666789999999763
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.3e-29 Score=224.79 Aligned_cols=304 Identities=12% Similarity=0.158 Sum_probs=229.3
Q ss_pred cCCcccEEEEEEeecCCCcEEEEec--CCCcEEEEEcccCc----------eeeeEEecCCCCceEEEEEccCCCcEEEE
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSS--ADGQVRLGQIFEDG----------RMDTKRLGKHQGRVYKLAVEPGSPYIIYS 121 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 121 (439)
..+...|.++..+| ++..+++|+ .|+.++||+...-- .........|.+.|+|+.|+|||+ .||+
T Consensus 10 ~H~~~~IfSIdv~p--dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAs 86 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHP--DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLAS 86 (942)
T ss_pred ccCCeeEEEEEecC--CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEee
Confidence 34556799999999 999999999 89999999874210 112234667999999999999998 5889
Q ss_pred eCCCCcEEEEEccCCCceeeEEee--------ccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCccc
Q 013644 122 CGEDGFVQHFDLRSDSATRLFYCS--------SFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193 (439)
Q Consensus 122 ~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 193 (439)
|+.|+.|.+|..... ........ ..........|...|..++|+|++ .+|++++.|++|.+|+.++.+.
T Consensus 87 GSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~- 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL- 163 (942)
T ss_pred ccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee-
Confidence 999999999998741 00000000 000000112378889999999977 8999999999999999998653
Q ss_pred CCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC-
Q 013644 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH- 271 (439)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (439)
...+.+|.+.|..+.|.|-|++||+-+ |++|++|.+... ...+.+..+
T Consensus 164 --------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----------------~i~k~It~pf 213 (942)
T KOG0973|consen 164 --------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----------------GIEKSITKPF 213 (942)
T ss_pred --------------eeeeecccccccceEECCccCeeeeecCCceEEEEEcccc----------------eeeEeeccch
Confidence 334588999999999999999999987 999999996653 122222222
Q ss_pred ---CCcceeeeEEeeCCCCceEEEeCC----CCeEEEEecCCCceeEeecccccceEEEeecCC-----Cc---------
Q 013644 272 ---RNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-----IP--------- 330 (439)
Q Consensus 272 ---~~~~~v~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-----~~--------- 330 (439)
........+. |||||++|++... -..+.|.+..+.+.-..|.||.+++.++.|+|. .+
T Consensus 214 ~~~~~~T~f~RlS-WSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 214 EESPLTTFFLRLS-WSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhCCCcceeeecc-cCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 2223477888 8999999998743 357899999989988999999999999999872 11
Q ss_pred ---EEEEEecCCeEEEeccCCCCCCCCCCc--hhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 331 ---MFATCGIEKTVKLWAPMPTDFPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 331 ---~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
.+|+|+.|++|.||.....++.....+ ...+.... |..++..++++|-||+|.+..++..+.-.
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms-WspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMS-WSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeee-EcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 689999999999999866655332221 23444444 67788899999999999999998876543
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-28 Score=189.62 Aligned_cols=275 Identities=16% Similarity=0.177 Sum_probs=200.1
Q ss_pred cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 133 (439)
....+.|.+++|+| ....++++++.|++||+|+++.......+....|.++|.+++|+.+|. .+++|+.|+.+++||+
T Consensus 24 ~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEc
Confidence 45678899999999 355666788999999999998754444456778999999999999997 5779999999999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
.+++....-. |..+|.++.|-+.. ...|++|+.|.+|+.||++....+..+..
T Consensus 102 ~S~Q~~~v~~------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------- 155 (347)
T KOG0647|consen 102 ASGQVSQVAA------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------- 155 (347)
T ss_pred cCCCeeeeee------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------------
Confidence 9996554433 78889999987743 13889999999999999997653322211
Q ss_pred CCCccEEEEEEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE
Q 013644 213 KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~ 291 (439)
...+.++.. ...+++++ .++.|.+|+++++... .+..... ..-.++++++| ++.+..+
T Consensus 156 --PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te---------------~k~~~Sp-Lk~Q~R~va~f-~d~~~~a 214 (347)
T KOG0647|consen 156 --PERVYAADV--LYPMAVVATAERHIAVYNLENPPTE---------------FKRIESP-LKWQTRCVACF-QDKDGFA 214 (347)
T ss_pred --cceeeehhc--cCceeEEEecCCcEEEEEcCCCcch---------------hhhhcCc-ccceeeEEEEE-ecCCceE
Confidence 112333222 23455555 4999999999876311 1111111 11237788844 5666669
Q ss_pred EeCCCCeEEEEecCCC--ceeEeeccccc---------ceEEEeecCCCcEEEEEecCCeEEEeccCCCC-CCCCCCchh
Q 013644 292 SGSDCGHLFIWKKKGG--KLVRLMVGDRH---------VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE 359 (439)
Q Consensus 292 ~~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~ 359 (439)
.|+-+|.+.+..+..+ +.-..|+.|.. .|++|+|+|....|+|+|.||++.+||-+.+. +...+.+..
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 9999999999998876 33445666652 58899999999999999999999999986543 344444444
Q ss_pred hhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 360 KIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
++ ..-+++.+|.+.++-+
T Consensus 295 pI-----------tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 295 PI-----------TCCSFNRNGSIFAYAL 312 (347)
T ss_pred cc-----------ceeEecCCCCEEEEEe
Confidence 43 4667888899888866
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=209.98 Aligned_cols=280 Identities=10% Similarity=0.165 Sum_probs=223.8
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+..|.+.+..+.|-+ +...|++|+.|..|++|++...+......+.+..+.|+.+.|.+++.+ +++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~-~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKH-VIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEcc--CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCce-EEeecCCCceeeee
Confidence 568999999999998 889999999999999999977765555678888899999999999986 55889999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
+...+...++.. |...|+++.|.... ..+++|+.|.+|++||+.+..+.+ ..+.
T Consensus 248 vd~~r~~~TLsG-----------HtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~k--------------t~l~ 301 (459)
T KOG0288|consen 248 VDSLRLRHTLSG-----------HTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSK--------------TVLP 301 (459)
T ss_pred ccchhhhhhhcc-----------cccceeeehhhccc-cceeeccccchhhhhhhhhhheec--------------cccc
Confidence 999888877765 78889999998865 459999999999999999866332 2222
Q ss_pred CCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE
Q 013644 213 KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~ 291 (439)
...+..|..+ ...++++. |++|++||.+.. ........+. .|+++. .+++|..|.
T Consensus 302 --~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~----------------~~~~sv~~gg---~vtSl~-ls~~g~~lL 357 (459)
T KOG0288|consen 302 --GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA----------------DKTRSVPLGG---RVTSLD-LSMDGLELL 357 (459)
T ss_pred --cccccceEec--ceeeeecccccceEEEeccCC----------------ceeeEeecCc---ceeeEe-eccCCeEEe
Confidence 2223344443 45566776 999999999877 4555555554 499999 899999999
Q ss_pred EeCCCCeEEEEecCCCceeEeecccc----cceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCc-hh-hhhhh
Q 013644 292 SGSDCGHLFIWKKKGGKLVRLMVGDR----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN-AE-KIMKA 364 (439)
Q Consensus 292 ~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~-~~-~~~~~ 364 (439)
+.+.|..+.+.|+.+.+....+.+.. ...+.+.|||++.|+++||.||.|+||++.++++ ..+... .. .+...
T Consensus 358 sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~ 437 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL 437 (459)
T ss_pred eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence 99999999999999988887776432 3588999999999999999999999999999886 333322 22 34444
Q ss_pred hccccCcceEEEeCCCcEEEEE
Q 013644 365 NKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 365 ~~~~~~~~~~~~~s~dg~v~~w 386 (439)
. |...+..+++++.++.+.+|
T Consensus 438 ~-W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 438 S-WNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred E-EcCCCchhhcccCCcceEec
Confidence 4 45567788888888888888
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-28 Score=212.63 Aligned_cols=283 Identities=17% Similarity=0.240 Sum_probs=230.0
Q ss_pred eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEE-EEEccCCCcEEEEeCCCCc
Q 013644 49 KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYK-LAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 49 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~l~s~~~dg~ 127 (439)
+...+.+|...|..+++. ++..+++++.||++++|+-..++.+....+.+|.+-|.. +++.+..+..+++|+.|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eEEEeccCccchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 445578999999999887 577899999999999999988887777778888888887 8888744445789999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
|.+|......+...+.. |+..|.++....++ .+++|+.|.++++|......
T Consensus 83 i~v~~~~~~~P~~~Lkg-----------H~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~---------------- 133 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKG-----------HKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV---------------- 133 (745)
T ss_pred EEEEecCCCCchhhhhc-----------cccceeeeecCCcC--ceEecccccceEEecchhhh----------------
Confidence 99999999998888876 78889999987765 49999999999999876532
Q ss_pred cccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
....+|...|.+++.-|++.++..+.|..|++|.-. +..+++.+|... |+.++. - ++
T Consensus 134 -~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~------------------~~l~tf~gHtD~--VRgL~v-l-~~ 190 (745)
T KOG0301|consen 134 -YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG------------------TLLKTFSGHTDC--VRGLAV-L-DD 190 (745)
T ss_pred -cccCCcchheeeeeecCCCcEEeccCcceeeeccCC------------------chhhhhccchhh--eeeeEE-e-cC
Confidence 224899999999999999966666679999999864 577899999986 999984 3 44
Q ss_pred ceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCC-CCCCCCCchhhhhhhhc
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANK 366 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~ 366 (439)
..+++++.||.|++|++ +|+++..+.+|...|.++...+++..+++++.|++++||+...- +...+|.. .+....
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPtt--siWsa~- 266 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTT--SIWSAK- 266 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCcc--ceEEEE-
Confidence 56789999999999999 79999999999999999998888899999999999999998621 11333332 222221
Q ss_pred cccCcceEEEeCCCcEEEEEEeccc
Q 013644 367 QGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 367 ~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
.....-+++++.||.|++|-....
T Consensus 267 -~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 267 -VLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -EeeCCCEEEeccCceEEEEEeccc
Confidence 123446889999999999987643
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=191.54 Aligned_cols=295 Identities=21% Similarity=0.291 Sum_probs=216.1
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
-.|+.|++-|.+||+|+.||.|.|||+.+.. +.+.+.+|..+|.+++|++ +|+.|++++.|..|.+||+..+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecC--CCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999999876 5566789999999999999 999999999999999999998886644
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
.. ...+|+...|+|.....+++.--+..-.+.++..++.. .+.... ... -.....+..|++.| +++++|
T Consensus 103 ir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~---d~d---ln~sas~~~fdr~g-~yIitG 171 (405)
T KOG1273|consen 103 IR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDD---DGD---LNSSASHGVFDRRG-KYIITG 171 (405)
T ss_pred EE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCC---ccc---cccccccccccCCC-CEEEEe
Confidence 44 45899999999977666655555555555555542211 111110 000 01112334678876 899999
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCC
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 255 (439)
...|.+.+||..+.+++.... -.....|..+.++..|++|+.-. |..|+.|++..-......
T Consensus 172 tsKGkllv~~a~t~e~vas~r--------------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~--- 234 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFR--------------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD--- 234 (405)
T ss_pred cCcceEEEEecchheeeeeee--------------echheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc---
Confidence 999999999999877543221 11136788999999999888875 999999998632111000
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEEecCCCceeEeecccc-cceEEEeecCCCcEEE
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFA 333 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~ 333 (439)
...+..+.+..--+...-.+++ ||.+|.|+++++. ...++||....|.+++.+.|.. .....+.|+|-...++
T Consensus 235 ----~e~e~~~K~qDvVNk~~Wk~cc-fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~ 309 (405)
T KOG1273|consen 235 ----GEVEPEHKLQDVVNKLQWKKCC-FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIA 309 (405)
T ss_pred ----CCcChhHHHHHHHhhhhhhhee-ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeee
Confidence 0011112222222222345566 8999999988875 4689999999999999999887 5778899999988888
Q ss_pred EEecCCeEEEeccCC
Q 013644 334 TCGIEKTVKLWAPMP 348 (439)
Q Consensus 334 s~~~dg~i~iw~~~~ 348 (439)
+- ..|.++||....
T Consensus 310 si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 310 SI-ASGVVYIWAVVQ 323 (405)
T ss_pred ec-cCCceEEEEeec
Confidence 87 679999999754
No 119
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.6e-27 Score=213.66 Aligned_cols=236 Identities=13% Similarity=0.163 Sum_probs=173.1
Q ss_pred ecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc-eeeEEeeccCCCCCCCC
Q 013644 77 SSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA-TRLFYCSSFSENSKQPM 155 (439)
Q Consensus 77 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 155 (439)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+...+|++|+.|++|++||+.++.. ...+.. +......
T Consensus 50 GG~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~----p~~~L~g 123 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD----PQCILKG 123 (568)
T ss_pred CCceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc----ceEEeec
Confidence 5668899999986543 34668899999999999998545899999999999999986532 110000 0000112
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 234 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 234 (439)
|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+ .+...|.+++|+|+|.+|++++
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~i--~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQI--NMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EEE--ecCCcEEEEEECCCCCEEEEEec
Confidence 67789999999988667789999999999999986521 111 2346799999999999999886
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCccee---eeEEeeCCCCceEEEeCCCC----eEEEEecCC-
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV---KGVNFFGPNDEYVMSGSDCG----HLFIWKKKG- 306 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~- 306 (439)
|+.|++||++++ .....+.+|...... .... |++++.+|++++.++ +|+|||+++
T Consensus 188 D~~IrIwD~Rsg----------------~~i~tl~gH~g~~~s~~v~~~~-fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 188 GKHMHIIDPRKQ----------------EIASSFHIHDGGKNTKNIWIDG-LGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred CCEEEEEECCCC----------------cEEEEEecccCCceeEEEEeee-EcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999887 466778888764222 1222 468999999877664 799999985
Q ss_pred CceeEeecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 307 GKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 307 ~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+++..+.. +.+.+......+++.++++|+.|++|++|++..+.+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 556655433 233444444456688999999999999999976643
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-28 Score=191.10 Aligned_cols=302 Identities=16% Similarity=0.183 Sum_probs=235.8
Q ss_pred eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 49 KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 49 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
+.+.+.+|...|+.++... ....+.+++.|.+.+||.++++.++ ..+.+|.+.|+++.|++.+. ++++++.|++-
T Consensus 140 lvre~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Esg~CL--~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLESGACL--ATYTGHTGSVNSIKFHNSGL-LLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhc--CCcceeecccccceeEEeeccccce--eeecccccceeeEEeccccc-eEEEccCCcch
Confidence 3445689999999999876 6678899999999999999999987 55889999999999999987 78899999999
Q ss_pred EEEEccC----CCc--ee------eEEeec----c------CC-------CCCCCCceeeeEEEeecCCCCcEEEEeecC
Q 013644 129 QHFDLRS----DSA--TR------LFYCSS----F------SE-------NSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 129 ~iwd~~~----~~~--~~------~~~~~~----~------~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
.||...- .+. .. ...... . .. ......|...|.+..|...+ ..+++++.|
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWD 293 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWD 293 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecc
Confidence 9997221 110 00 000000 0 00 00112466677788887754 899999999
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccc
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPED 258 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~ 258 (439)
.+..+||+.+++.+ ..+.+|....+.++-.|..+++++++ |.+.++||++..
T Consensus 294 RTAnlwDVEtge~v---------------~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea------------ 346 (481)
T KOG0300|consen 294 RTANLWDVETGEVV---------------NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA------------ 346 (481)
T ss_pred ccceeeeeccCcee---------------ccccCcchhccccccCCcceEEEEeccCceeEeccchhh------------
Confidence 99999999998743 34488999999999999999999998 999999999843
Q ss_pred ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc-eeEeecccccceEEEeecCCCcEEEEEec
Q 013644 259 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGI 337 (439)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 337 (439)
+..+..|.+|... |+++. |. .+..+++|+.|.+|++||+++.+ ++.++. -..+++.++.+..++.||.--.
T Consensus 347 ---I~sV~VFQGHtdt--VTS~v-F~-~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhD 418 (481)
T KOG0300|consen 347 ---IQSVAVFQGHTDT--VTSVV-FN-TDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHD 418 (481)
T ss_pred ---cceeeeecccccc--eeEEE-Ee-cCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccC
Confidence 2567889999976 99998 55 45668899999999999998874 566666 3578999999998889999988
Q ss_pred CCeEEEeccCCCCCCCCC-----CchhhhhhhhccccCcc-eEEEeCCCcEEEEEEeccc
Q 013644 338 EKTVKLWAPMPTDFPPLP-----DNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 338 dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~s~dg~v~~w~~~~~ 391 (439)
+..|++||+.+.++..++ +|..-+....|....+. .+++++-|..+.-|++...
T Consensus 419 NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 419 NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999999999999887776 45555666655444333 7889999999999998643
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=6.8e-27 Score=194.58 Aligned_cols=348 Identities=11% Similarity=0.133 Sum_probs=246.8
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCC--------eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDK--------LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg--------~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
..+.+.||...|.|++.+|+.-.+++|-.-| .+++||..+...+..+ ......|.+++|++...|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEe
Confidence 3566789999999999999988888764433 5999998776655443 456678999999997677777665
Q ss_pred --cCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCC
Q 013644 78 --SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 78 --~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
+.+..+.+||...+... .......+.|....|+|.++.++++++ .+.+.+|+++.+...+........
T Consensus 175 D~s~~h~lSVWdWqk~~~~--~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~------- 244 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKL--GPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKR------- 244 (626)
T ss_pred cCCCccccchhhchhhhcc--CcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccc-------
Confidence 34667889999765544 234455678899999999998887765 578999999998876655443332
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecC
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 235 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d 235 (439)
.+.-|.|++|.+++ -+++|..+|.|.||+..+.+ ..++. ..|.+.|.+++...+|.+|..+.|
T Consensus 245 ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------~~k~~-~aH~ggv~~L~~lr~GtllSGgKD 307 (626)
T KOG2106|consen 245 EKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------ISKQV-HAHDGGVFSLCMLRDGTLLSGGKD 307 (626)
T ss_pred cceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------EEeEe-eecCCceEEEEEecCccEeecCcc
Confidence 23679999999976 68999999999999987654 22233 389999999999999999994459
Q ss_pred CeEEEEEccCCCCCCCCCCCccc-------------------------ccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPED-------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
..|..||-.-. ......++... .-.........+|... ...++ .+|+.+.+
T Consensus 308 Rki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de--lwgla-~hps~~q~ 383 (626)
T KOG2106|consen 308 RKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE--LWGLA-THPSKNQL 383 (626)
T ss_pred ceEEecccccc-ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc--eeeEE-cCCChhhe
Confidence 99999993221 11211111111 0000111122334432 56666 67777888
Q ss_pred EEeCCCCeEEEEecC--------------------------------------CCceeEeecccccceEEEeecCCCcEE
Q 013644 291 MSGSDCGHLFIWKKK--------------------------------------GGKLVRLMVGDRHVVNQLEPHPHIPMF 332 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~--------------------------------------~~~~~~~~~~h~~~v~~~~~s~~~~~l 332 (439)
++++.|+.+++|+-. +...+. +.....++++++|+|+|.+|
T Consensus 384 ~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 384 LTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred eeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEE
Confidence 888888888888722 111111 11225789999999999999
Q ss_pred EEEecCCeEEEeccCCCCC--CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEE
Q 013644 333 ATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 333 ~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w 386 (439)
|.|+.|+.|.||.+..... .....+....+.-..++.++.++++-|-|-.+..|
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 9999999999999864332 33332333444445578889999999999999999
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.3e-27 Score=196.47 Aligned_cols=325 Identities=16% Similarity=0.212 Sum_probs=240.4
Q ss_pred eeeecc-ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGH-KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h-~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
..|.++ +.-|.|++|.++|+ ++||..+|.|.||+..+.+...+.. .|.+.|.+++... +| .|++|+.|..|..|
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr--~G-tllSGgKDRki~~W 313 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLR--DG-TLLSGGKDRKIILW 313 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEec--Cc-cEeecCccceEEec
Confidence 344443 36799999999997 7899999999999997776666655 9999999999996 55 45559999999999
Q ss_pred EcccCce--e------------------------------------eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 87 QIFEDGR--M------------------------------------DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 87 ~~~~~~~--~------------------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
|-.-.+. . ......+|.+..+.++.+|+.+ ++++++.|+.+
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceE
Confidence 8321000 0 0112345888899999999987 57799999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
++|+ ..+.+.... -..++.|+.|+|.| .++.|+..|...+.|..+...+
T Consensus 393 ~lW~--~~k~~wt~~------------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv--------------- 441 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKI------------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLV--------------- 441 (626)
T ss_pred EEcc--CCceeEEEE------------ecCceeEeeccCcc--eEEEeeccceEEEEecccceeE---------------
Confidence 9999 334333322 24458899999986 8999999999999999885432
Q ss_pred ccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
.+ .....+++.++|+|+|.+||.++ |+.|++|-+.... ........+.. .+|+.+. ||+|+
T Consensus 442 ~~-~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g---------------~~y~r~~k~~g-s~ithLD-wS~Ds 503 (626)
T KOG2106|consen 442 TI-HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG---------------RKYSRVGKCSG-SPITHLD-WSSDS 503 (626)
T ss_pred EE-EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC---------------cEEEEeeeecC-ceeEEee-ecCCC
Confidence 11 22277899999999999999998 9999999987652 22233333333 5799999 89999
Q ss_pred ceEEEeCCCCeEEEEecCCCceeEee------------------cccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLVRLM------------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~~~~------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+++.+-+.|-.|..|.....+.+... ..|...|..++-+...+++|+|...|.|++|...-.
T Consensus 504 ~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC
Confidence 99999999999999953322211111 134456777777888899999999999999987433
Q ss_pred CC----CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 350 DF----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 350 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
.+ ..+.+|...+..+.. ..+...+++...|.++..|++
T Consensus 584 s~rA~~he~~ghs~~vt~V~F-l~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 584 SPRAPSHEYGGHSSHVTNVAF-LCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CCcccceeeccccceeEEEEE-eeCCceEEecCCCceEEEEEe
Confidence 22 445567766666653 334556666669999999986
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.9e-29 Score=217.04 Aligned_cols=292 Identities=17% Similarity=0.248 Sum_probs=227.4
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCccee--ee-ecCC---cccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKF--SY-LSGH---LDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~-~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
....+|...++-..++.++. ..++|+.+....... .. .... .-.+..+.|... +.++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEec
Confidence 45677888898888888876 478888775443211 11 1111 123556778753 7889999999999999999
Q ss_pred ccC-ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 89 FED-GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 89 ~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
... +......+..|...++++.|++..+++|++|++||+|++||++..+....+.. ....|..+.|+|
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----------nSESiRDV~fsp 186 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----------NSESIRDVKFSP 186 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-----------cchhhhceeecc
Confidence 752 22223457889999999999999999999999999999999999888777765 355699999999
Q ss_pred CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCC
Q 013644 168 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 247 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 247 (439)
..++.|+++...|.+++||++...
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~-------------------------------------------------------- 210 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPD-------------------------------------------------------- 210 (839)
T ss_pred CCCceEEEecCCceEEEeeccCch--------------------------------------------------------
Confidence 888999999999999999999633
Q ss_pred CCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-ccceEEEeec
Q 013644 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPH 326 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s 326 (439)
++...+.+|.+. |.++. |+|++.+||+|+.|+.|+||++.+.+......-+ ..+|.+|.|-
T Consensus 211 ---------------r~~~k~~AH~Gp--V~c~n-whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 211 ---------------RCEKKLTAHNGP--VLCLN-WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred ---------------hHHHHhhcccCc--eEEEe-ecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 344667778776 88888 8999999999999999999999876543333223 3689999999
Q ss_pred CCCcE-EEEEe--cCCeEEEeccCCCCC--CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccce
Q 013644 327 PHIPM-FATCG--IEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 393 (439)
Q Consensus 327 ~~~~~-l~s~~--~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~ 393 (439)
|..++ ||+++ .|-.|+|||+...-+ ..+..|...+..+.|.+.+...+.+++.||.+..-.+++...
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 98775 66665 478999999976544 556678888888888888888999999999988776665533
No 124
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7e-28 Score=208.74 Aligned_cols=303 Identities=15% Similarity=0.218 Sum_probs=231.6
Q ss_pred cceeeeeeccccceEEEEECCC-----------CCEEEEecCCCeEEEEeCCCCcc--e-ee------------------
Q 013644 4 INLCGKLHGHKGCVNAVEFNST-----------GDFLVSGSDDKLVIFWDWKDRRE--K-FS------------------ 51 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~-----------~~~l~t~~~dg~i~iw~~~~~~~--~-~~------------------ 51 (439)
......+--|...|+.+.--|- ...|+|++.|++||+|++..... + .+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 3444556678888888876551 12489999999999999865210 0 00
Q ss_pred e---------------ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC--
Q 013644 52 Y---------------LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG-- 114 (439)
Q Consensus 52 ~---------------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 114 (439)
+ .-.....+.+++.+| ++++|++|..-|+++||++.+.+.. ..+..|...|.|+.++.-
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~--~~~eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYT--CFMEAHESEILCLEYSFPVL 514 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhh--hheecccceeEEEeecCchh
Confidence 0 011234689999999 9999999999999999999877665 447889999999999852
Q ss_pred CCcEEEEeCCCCcEEEEEccCCCc-eeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcc
Q 013644 115 SPYIIYSCGEDGFVQHFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHW 192 (439)
Q Consensus 115 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 192 (439)
+..+|++++.|..|++||+...-. .+.+.. |...|+++.|.-.+ ...+++++.|..|.+--.+...
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~-----------HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~- 582 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDG-----------HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS- 582 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcc-----------cccceeEEEEeecCCceEEEeccCchhhheehhcccc-
Confidence 335899999999999999876532 233322 78889999997654 3578888888776543222110
Q ss_pred cCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC
Q 013644 193 YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH 271 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (439)
.. ..-++....-....+..++..|..++++++. |..|+||++..+ +..+.|++.
T Consensus 583 --------~g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg----------------Kq~k~FKgs 637 (1080)
T KOG1408|consen 583 --------SG-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG----------------KQVKSFKGS 637 (1080)
T ss_pred --------Cc-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc----------------ceeeeeccc
Confidence 00 0111222233456789999999999988886 999999999988 677788775
Q ss_pred CCc-ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 272 RNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 272 ~~~-~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
... .....+. ..|.|.||++...|.++.++|.-+|+++..+.||...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 638 ~~~eG~lIKv~-lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 638 RDHEGDLIKVI-LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccCCCceEEEE-ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 543 4567777 799999999999999999999999999999999999999999999999999999999999998753
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-27 Score=203.36 Aligned_cols=291 Identities=18% Similarity=0.261 Sum_probs=216.6
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
+...++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++.++. ..+.|.|++|+|..+-..||++-... +.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 345689999999999999999999999999999999999999988763 45689999999954444455443332 333
Q ss_pred EEc---------------------------------ccCcee--eeEEecCCCCceEEEEEccCCCcEEEEeCC--CCcE
Q 013644 86 GQI---------------------------------FEDGRM--DTKRLGKHQGRVYKLAVEPGSPYIIYSCGE--DGFV 128 (439)
Q Consensus 86 w~~---------------------------------~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i 128 (439)
-+. ...... .....-.|...|..+.|+..|.|+..++.. ...|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 322 111000 011233478899999999999975433332 3468
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
.|.++.......-+.. ..+.+.++.|+|.. .+|++++. ..|++||+..+.+++
T Consensus 549 liHQLSK~~sQ~PF~k-----------skG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvK-------------- 601 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRK-----------SKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVK-------------- 601 (733)
T ss_pred EEEecccccccCchhh-----------cCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHH--------------
Confidence 8888877654433322 35568999999987 56666654 689999998765322
Q ss_pred ccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
.+......|..++++|.|.-|+.++ |+.+..||+.... ++.+++.-|... +++++ |++.-
T Consensus 602 -kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va-~H~ry 662 (733)
T KOG0650|consen 602 -KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVA-FHKRY 662 (733)
T ss_pred -HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc---------------chhHHhhhhhhh--hhhhh-hcccc
Confidence 2234567899999999998777776 9999999997653 456677777765 89999 89999
Q ss_pred ceEEEeCCCCeEEEEec-------CCC--ceeEeecccccc----eEEEeecCCCcEEEEEecCCeEEEec
Q 013644 288 EYVMSGSDCGHLFIWKK-------KGG--KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~-------~~~--~~~~~~~~h~~~----v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
.++++|+.||++.||.- ++. -++..+.+|... |..+.|+|...+|++++.||+|++|.
T Consensus 663 PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 99999999999999852 111 245678888754 89999999999999999999999983
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-28 Score=183.93 Aligned_cols=257 Identities=21% Similarity=0.303 Sum_probs=202.1
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-eeeEEecCCCCceEEEEEcc--CCCcEEEEeCCCCc
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-MDTKRLGKHQGRVYKLAVEP--GSPYIIYSCGEDGF 127 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~ 127 (439)
++...|+..|..+...- .|..|++++.|++|+|+.++.+.. .....+.+|.++|..++|.. .|. +|++++.||.
T Consensus 5 ~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgk 81 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGK 81 (299)
T ss_pred ehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc-EeeEeecCce
Confidence 34467888888887776 899999999999999999987765 55678999999999999965 555 8999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
|.||.-..+.-.+... ...|...|++++|.|.+ +..|++++.||.|.+.+.+... ...
T Consensus 82 VIiWke~~g~w~k~~e---------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------------~w~ 140 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYE---------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------------GWT 140 (299)
T ss_pred EEEEecCCCchhhhhh---------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------------Ccc
Confidence 9999988875433221 22278899999999964 3678999999999999988641 113
Q ss_pred ccccccCCCccEEEEEEccC---C-----------CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC
Q 013644 207 PRHLIGKNNIHITGLAYSNT---S-----------ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH 271 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (439)
...+...|...+++++|.|. | +.|++++ |..|++|+...+ .....+.+.+|
T Consensus 141 t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--------------~w~~e~~l~~H 206 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--------------SWKLERTLEGH 206 (299)
T ss_pred chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--------------chhhhhhhhhc
Confidence 34455789999999999986 4 4577776 999999998875 22344558889
Q ss_pred CCcceeeeEEeeCCCC----ceEEEeCCCCeEEEEecCCC--c-eeEeecccccceEEEeecCCCcEEEEEecCCeEEEe
Q 013644 272 RNSQTVKGVNFFGPND----EYVMSGSDCGHLFIWKKKGG--K-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 272 ~~~~~v~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
... |+.++ +.|.- .+||+++.||++.||-.... . ....+......+..+.||+.|++|+.++.|+.|.+|
T Consensus 207 ~dw--VRDVA-waP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 207 KDW--VRDVA-WAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred chh--hhhhh-hccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 876 89999 67754 58999999999999976521 1 122333345789999999999999999999999999
Q ss_pred ccCC
Q 013644 345 APMP 348 (439)
Q Consensus 345 ~~~~ 348 (439)
....
T Consensus 284 ke~~ 287 (299)
T KOG1332|consen 284 KENV 287 (299)
T ss_pred EeCC
Confidence 8653
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=194.91 Aligned_cols=308 Identities=16% Similarity=0.239 Sum_probs=224.1
Q ss_pred ccceeeeeeccccceEEEEECCCC--CEEEEecCCCeEEEEeCCCC---cceeeeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTG--DFLVSGSDDKLVIFWDWKDR---REKFSYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+.....++-|.++|++++|+|.. +++|+|..-|+|-+||+.+. ..-...+..|..+|.++.|+|. +...+++.
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ss 253 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSS 253 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-Chhheeee
Confidence 345566778899999999999954 68899999999999999532 2334456789999999999995 77889999
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCcee-eEEeeccCCCCCCCCc
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATR-LFYCSSFSENSKQPMN 156 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (439)
+.||+|++-|++.........+......+.++.|+.+... ++.+..=|...+||++++.... .+.. |
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~l-----------h 321 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRL-----------H 321 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhh-----------h
Confidence 9999999999976654333334334556778888888775 5567666799999999876532 2222 5
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-cC
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 235 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d 235 (439)
...|.+++++|..+.+|++++.|++++|||++....... +.-....|...|.++.|+|.+-.|++. .|
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecccccceeeeeEEcCCCCceEeeccC
Confidence 668999999999999999999999999999997552211 112235789999999999987545555 59
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC----cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 311 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 311 (439)
..|++||..--.. . -++...-.|.. ..+..... |.|+..++++|..-..|-|+|-..++.+.
T Consensus 391 ~~IRv~dss~~sa------------~-~~p~~~I~Hn~~t~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 391 NEIRVFDSSCISA------------K-DEPLGTIPHNNRTGRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred CceEEeecccccc------------c-CCccceeeccCcccccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEee
Confidence 9999999841000 0 01111111211 11233344 89999999999999999999999888888
Q ss_pred eeccccc-ceEE-EeecCCCc-EEEEEecCCeEEEeccCC
Q 013644 312 LMVGDRH-VVNQ-LEPHPHIP-MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 312 ~~~~h~~-~v~~-~~~s~~~~-~l~s~~~dg~i~iw~~~~ 348 (439)
.+..... .|.+ ..|+|-+. +++.++..|.|.||.-+.
T Consensus 457 el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 457 ELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 7765443 4554 46999888 454555678888886543
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=196.48 Aligned_cols=253 Identities=19% Similarity=0.216 Sum_probs=196.6
Q ss_pred eccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
++|...|.+++.++||+|||+|+.|..|.||+.++.+.+.. +.+|.+.|.+++|-. ....|++++.|++|++|++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~-~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV-FKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc-ccccccceeeeeeec--CccceeeeecCCceEEEehhH
Confidence 48999999999999999999999999999999999987665 589999999999998 888999999999999999987
Q ss_pred CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
...+ ..+.+|.+.|..|.-..-++ ++.+|+.|+++++|++..... .++.. +.+.+-|++|-.+
T Consensus 276 ~s~v--etlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesq-lifrg-----------~~~sidcv~~In~-- 338 (479)
T KOG0299|consen 276 LSYV--ETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQ-LIFRG-----------GEGSIDCVAFIND-- 338 (479)
T ss_pred hHHH--HHHhCCccceeeechhcccc-eEEeccccceeEEEeccccce-eeeeC-----------CCCCeeeEEEecc--
Confidence 7666 44889999999999888776 676777999999999943322 22222 4567899999875
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGP 249 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 249 (439)
..|++|+.+|.|.+|++.+.+.+-......++.... -...+..+|++++..|...++++|+ +|.|++|-+..+.
T Consensus 339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~-- 413 (479)
T KOG0299|consen 339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-- 413 (479)
T ss_pred cceeeccCCceEEEeeecccCceeEeeccccccCCc---cccccccceeeeEecccCceEEecCCCCceEEEEecCCc--
Confidence 689999999999999999887665443333322211 0122346899999999999999998 9999999998773
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe-CCCCeEEEE
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIW 302 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~-~~dg~i~iw 302 (439)
..+.++..+. ....|++++ |+++|+.|++| +....+--|
T Consensus 414 ----------r~i~~l~~ls---~~GfVNsl~-f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 414 ----------RAINLLYSLS---LVGFVNSLA-FSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ----------cccceeeecc---cccEEEEEE-EccCCCEEEEeccccccccee
Confidence 1222333333 334599999 78999966665 444444344
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-25 Score=191.35 Aligned_cols=363 Identities=13% Similarity=0.143 Sum_probs=253.6
Q ss_pred eeeeeeccc-cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 6 LCGKLHGHK-GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 6 ~~~~l~~h~-~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
+...+.||. ..|-+++|++.+ .|.+.+.+|.|.-||+.+.++.... ....+.|++++.+| .+..++.|+.||.+.
T Consensus 60 ~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p--~~~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINP--ENTILAIGCDDGVLY 135 (691)
T ss_pred eeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCC--ccceEEeecCCceEE
Confidence 345566654 679999999555 5777788999999999999887664 67788999999999 899999999999888
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
.++...+.......+...++.|.+++|+|++.+ +++|+.||.|++||...+.........-.. .......-|.++.
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~---l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDR---LSKREPTIVWSVL 211 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeecccc---cccCCceEEEEEE
Confidence 888877666666667778899999999999974 779999999999999999877633322111 1111345588888
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEc
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEK 243 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~ 243 (439)
|-.+ ..+++|...|.|.+||...+.+++ ....|...|.+++..+++..+.+++ |+.|..|..
T Consensus 212 ~Lrd--~tI~sgDS~G~V~FWd~~~gTLiq---------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 212 FLRD--STIASGDSAGTVTFWDSIFGTLIQ---------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred Eeec--CcEEEecCCceEEEEcccCcchhh---------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 8865 589999999999999999876432 2266788999999999987777766 998888877
Q ss_pred cCCCCC----CCCCCCccc-------------------------------------------------------------
Q 013644 244 NMGLGP----SPLSLSPED------------------------------------------------------------- 258 (439)
Q Consensus 244 ~~~~~~----~~~~~~~~~------------------------------------------------------------- 258 (439)
.+.... ........+
T Consensus 275 ~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~ 354 (691)
T KOG2048|consen 275 TTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHG 354 (691)
T ss_pred cCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccc
Confidence 655220 000000000
Q ss_pred ----------cc---ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC-------------------
Q 013644 259 ----------LQ---KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG------------------- 306 (439)
Q Consensus 259 ----------~~---~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------------------- 306 (439)
.+ ....+..+... ....|.+.+ .||+|++|+.+.- ...++|.++.
T Consensus 355 v~lwrlGS~~~~g~~~~~~Llkl~~k-~~~nIs~~a-iSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a 431 (691)
T KOG2048|consen 355 VDLWRLGSVILQGEYNYIHLLKLFTK-EKENISCAA-ISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDA 431 (691)
T ss_pred ccceeccCcccccccChhhheeeecC-Cccceeeec-cCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccc
Confidence 00 00000111111 112266666 8999999998873 2333333322
Q ss_pred -------------------------------CceeEeec--ccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCC
Q 013644 307 -------------------------------GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP 353 (439)
Q Consensus 307 -------------------------------~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 353 (439)
.+.+..+. +....|..+..||+|++||+.+.+|.|.+|++++.+...
T Consensus 432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~ 511 (691)
T KOG2048|consen 432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHL 511 (691)
T ss_pred eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeec
Confidence 00010111 123578999999999999999999999999999988755
Q ss_pred CCCch-hhhhhhhccccCcceEEEeCCCcEEEEEEecccceeee
Q 013644 354 LPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 396 (439)
Q Consensus 354 ~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~~ 396 (439)
+.... ..+......+.....++...+|+++.-++++.++..++
T Consensus 512 l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 512 LKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRW 555 (691)
T ss_pred chhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhh
Confidence 55222 33333333335566788888899999999976664443
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.6e-27 Score=182.63 Aligned_cols=268 Identities=19% Similarity=0.176 Sum_probs=200.0
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.....|.++.|+| .++.|++++.||++++|++...... ....|..++.+++|.++.. +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~---~~~~~~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLK---LKFKHGAPLLDCAFADEST--IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhh---hheecCCceeeeeccCCce--EEEeccCceEEEEEec
Confidence 4567899999998 8888888899999999999876443 2334889999999998763 6799999999999999
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCC
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 214 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
+++....-. |...+.|+.+.+.. ..+++|+.|++|++||.+....... ...
T Consensus 84 ~~~~~~igt------------h~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~----------------~d~ 134 (323)
T KOG1036|consen 84 TGNEDQIGT------------HDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGT----------------FDQ 134 (323)
T ss_pred CCcceeecc------------CCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccc----------------ccc
Confidence 987665544 78889999999865 7999999999999999996332111 112
Q ss_pred CccEEEEEEccCCCEEEE-ecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 215 NIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 215 ~~~i~~~~~~~~~~~l~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
...|.++... +..|++ +.+..+.+||+++...+ .......-...++++++ -|++.-.+++
T Consensus 135 ~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~----------------~q~reS~lkyqtR~v~~-~pn~eGy~~s 195 (323)
T KOG1036|consen 135 GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEP----------------FQRRESSLKYQTRCVAL-VPNGEGYVVS 195 (323)
T ss_pred CceEEEEecc--CCEEEEeecCceEEEEEcccccch----------------hhhccccceeEEEEEEE-ecCCCceEEE
Confidence 3356666554 445555 56999999999876321 21222222234888884 4688889999
Q ss_pred CCCCeEEEEecCCC----ceeEeecccc---------cceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchh
Q 013644 294 SDCGHLFIWKKKGG----KLVRLMVGDR---------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAE 359 (439)
Q Consensus 294 ~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~ 359 (439)
+-||+|.+=.++.. +....|+.|. -+|++|+|+|-.+.||||+.||.|.+||+.+++. ..+....
T Consensus 196 SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~- 274 (323)
T KOG1036|consen 196 SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE- 274 (323)
T ss_pred eecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-
Confidence 99999988666554 3445566664 2899999999999999999999999999987654 4443322
Q ss_pred hhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 360 KIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
.+...++++.||.......
T Consensus 275 ----------~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 275 ----------TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ----------CceEEEEeccCCCeEEEEe
Confidence 2235778888988776644
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.4e-27 Score=194.88 Aligned_cols=267 Identities=16% Similarity=0.221 Sum_probs=207.5
Q ss_pred ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec
Q 013644 99 LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS 178 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 178 (439)
...|.+.|+.+...|+.+.++++.+..+.|+|||..+......... ...+.....+|...-.+++|++...-.|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccC
Confidence 3458999999999999999999999999999999876543332211 222222233356657789999988789999999
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCc
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 256 (439)
|+.|.+||+...... -....+...+.+|...|..++|++-. .++++.+ |+.+.|||++++ .
T Consensus 199 d~~i~lwdi~~~~~~--------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~-------- 261 (422)
T KOG0264|consen 199 DHTICLWDINAESKE--------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T-------- 261 (422)
T ss_pred CCcEEEEeccccccC--------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C--------
Confidence 999999999875421 12235566778999999999999876 4455554 999999999963 1
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEecCCC-ceeEeecccccceEEEeecCCCc-EEE
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIP-MFA 333 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~-~l~ 333 (439)
.+......+|... +.+++ |+| ++..||+|+.|++|++||+++. +++..+.+|...|.+|.|+|... .||
T Consensus 262 -----~~~~~~~~ah~~~--vn~~~-fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 262 -----SKPSHSVKAHSAE--VNCVA-FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred -----CCCcccccccCCc--eeEEE-eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 1455666777776 99999 565 5567899999999999999876 56789999999999999999754 899
Q ss_pred EEecCCeEEEeccCCCC-C--------------CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 334 TCGIEKTVKLWAPMPTD-F--------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 334 s~~~dg~i~iw~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+++.|+.+.|||+..-. . -.-.||...|....|...++-.+++.+.|+.+.||.+...
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 99999999999985321 1 1123788888888887778889999999999999987543
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=195.72 Aligned_cols=277 Identities=14% Similarity=0.200 Sum_probs=208.7
Q ss_pred EecCC-CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-CCcEEEEEcccCceeeeEEecCCCCceEE
Q 013644 31 SGSDD-KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-DGQVRLGQIFEDGRMDTKRLGKHQGRVYK 108 (439)
Q Consensus 31 t~~~d-g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~ 108 (439)
+++.| .++.+||+.++....++-.+....-.++... .+.+++++.. ...|.+|.+....... ...--.++|.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhh--hhcccccceee
Confidence 34444 4599999999988777633313333333333 4567766654 5678999986544432 12234578999
Q ss_pred EEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc
Q 013644 109 LAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188 (439)
Q Consensus 109 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 188 (439)
++-+|.|. +|+.|+..|.|++|.+.+|..+..+.. |-..|+++.|+.++ .+|++|+.||.|.+|.+.
T Consensus 87 l~s~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~a-----------HYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 87 LASSNLGY-FLLAGTISGNLYLWELSSGILLNVLSA-----------HYQSITCLKFSDDG-SHIITGSKDGAVLVWLLT 153 (476)
T ss_pred eecCCCce-EEEeecccCcEEEEEeccccHHHHHHh-----------hccceeEEEEeCCC-cEEEecCCCccEEEEEEE
Confidence 99999996 566777999999999999998887754 67789999999987 899999999999999986
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccc
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEP 265 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
..-.-. +-....+...+..|.-+|+.+...+.| ..+++++ |.++++||+..+ ..+
T Consensus 154 ~lv~a~------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------~LL 211 (476)
T KOG0646|consen 154 DLVSAD------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------VLL 211 (476)
T ss_pred eecccc------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----------------eee
Confidence 532110 111234556668999999999988764 4566665 999999999887 333
Q ss_pred eeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC----------------ceeEeeccccc--ceEEEeecC
Q 013644 266 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----------------KLVRLMVGDRH--VVNQLEPHP 327 (439)
Q Consensus 266 ~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~h~~--~v~~~~~s~ 327 (439)
..+.. +..+.+++ .+|-++.+++|+.+|.|.+.++... ..+..+.||.+ .|+|++.+-
T Consensus 212 lti~f---p~si~av~-lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 212 LTITF---PSSIKAVA-LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred EEEec---CCcceeEE-EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 33333 33488888 8999999999999999999876432 34566788987 999999999
Q ss_pred CCcEEEEEecCCeEEEeccCCCCC
Q 013644 328 HIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 328 ~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
||.+|++|+.||.|+|||+.+.+.
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHH
Confidence 999999999999999999987665
No 133
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-27 Score=189.28 Aligned_cols=303 Identities=22% Similarity=0.313 Sum_probs=226.0
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCC------CcceeeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD------RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
.+.+.+|.+.|+++.|+.++++||+|+.|..+++|++.. .+++...-..|...|.|++|.. .+.++++|..+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCc
Confidence 345789999999999999999999999999999999853 3444444456778999999998 88999999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
++|.+.|+++.+.+....-....+.|..+..+|..+ +|++.+.++.|.+||.+.......+.+... .....
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--------~~~~F 197 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPAN--------SGKNF 197 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecC--------CCccc
Confidence 999999999887765544444556999999999976 788999999999999998763333333222 23457
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 239 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~ 239 (439)
..+.|+|..+.+|++.+..+-+-+||.+..+. ++.......-+........++.|+|+|..|.+-. ...-.
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--------~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQAR--------PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccc--------hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 88999999999999999999999999987541 1111110011111223346788999998777665 55666
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEe------CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC------
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------ 307 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------ 307 (439)
+||+-.. ++ ..++ +..+..++.+++| - +..-+++|+.+-.|++|.+...
T Consensus 270 ~~D~~S~----------------R~-~V~k~D~N~~GY~N~~T~KS~~F-~-~D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 270 YFDFISQ----------------RC-FVLKSDHNPNGYCNIKTIKSMTF-I-DDYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred Eeeeecc----------------cc-eeEeccCCCCcceeeeeeeeeee-e-cceeeeccCcccceEEEecCCCccccCc
Confidence 7777553 11 1222 2223345777774 3 4455999999999999986531
Q ss_pred -----------------ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 308 -----------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 308 -----------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
+.+..+++|...++.+.|+|...+|++.+....++||..-
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1345678999999999999999999999999999999753
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-25 Score=192.58 Aligned_cols=294 Identities=14% Similarity=0.173 Sum_probs=231.8
Q ss_pred eccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCC-cccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGH-LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
.--..+|.+++|+.+.+.||.+-.+|.|-||++...-.....+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecc
Confidence 3345899999999999999999999999999999876555555554 4679999999 57889999999999999999
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
+.+.. ..+....+.|++++.+|.+. .++.|+.||.+..++...++......... ..+++.++.|+|++
T Consensus 99 ~lk~~--~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~r---------q~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 99 TLKQK--YNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMR---------QKSRVLSLSWNPTG 166 (691)
T ss_pred cCcee--EEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccc---------ccceEEEEEecCCc
Confidence 88776 44667789999999999997 67889999988888777766544332221 35789999999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 249 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~ 249 (439)
..+++|+.||.|++||..+++.+.... ......-+....-|.++.+..++.++.+-+.|.|.+||...+
T Consensus 167 -~~i~~Gs~Dg~Iriwd~~~~~t~~~~~-------~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g--- 235 (691)
T KOG2048|consen 167 -TKIAGGSIDGVIRIWDVKSGQTLHIIT-------MQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG--- 235 (691)
T ss_pred -cEEEecccCceEEEEEcCCCceEEEee-------ecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---
Confidence 789999999999999999877443111 011111122345688888887776665557999999999887
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce----eEeecccccceEEEee
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEP 325 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~ 325 (439)
...+.+..|... |.+++ ..+++.++++++.|+.|..|...+.+. ......|...|.+++.
T Consensus 236 -------------TLiqS~~~h~ad--Vl~La-v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 236 -------------TLIQSHSCHDAD--VLALA-VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred -------------chhhhhhhhhcc--eeEEE-EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeee
Confidence 677788888877 99999 789999999999999999998776543 2334567889999999
Q ss_pred cCCCcEEEEEecCCeEEEeccCC
Q 013644 326 HPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 326 s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
.++ .|++|+.|..+.+=....
T Consensus 300 ~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 300 IEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ecc--eEEecceeeEEEEccccc
Confidence 877 899999999988766544
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.5e-25 Score=194.12 Aligned_cols=272 Identities=10% Similarity=0.091 Sum_probs=194.7
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCCCcEEEEEcccCceeeeEEecCCCC
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSADGQVRLGQIFEDGRMDTKRLGKHQG 104 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 104 (439)
++.+++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+| ++..+ ++++.++.|++||+.+++... .+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC-
Confidence 357889999999999999888765554 444 3467899999 88876 567788999999998776542 344333
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc-eEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-YAR 183 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~ 183 (439)
.+..++|+|+++.++++++.++.|++||+++.+.+..+.. ...+.+++|+|++ .+++++..++ .+.
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------------~~~~~~~~~~~dg-~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------------GVEPEGMAVSPDG-KIVVNTSETTNMAH 140 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------------CCCcceEEECCCC-CEEEEEecCCCeEE
Confidence 3567899999986666777789999999998765554431 2235779999987 6777777654 567
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
+||..+++.... . .....+..++|+|++++|+.+ . ++.|++||+.++.
T Consensus 141 ~~d~~~~~~~~~--------------~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-------------- 190 (300)
T TIGR03866 141 FIDTKTYEIVDN--------------V--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-------------- 190 (300)
T ss_pred EEeCCCCeEEEE--------------E--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--------------
Confidence 789876542110 0 012235678999999877544 4 8999999998762
Q ss_pred cccceeEeCC-----CCcceeeeEEeeCCCCceEEE-eCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEE
Q 013644 262 REEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 262 ~~~~~~~~~~-----~~~~~v~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 335 (439)
....+..+ ........+. ++|+++++++ .+.++.+.+||+++++.+..+. +...+.+++|+|++++|+++
T Consensus 191 --~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 191 --VIKKITFEIPGVHPEAVQPVGIK-LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred --eeeeeeecccccccccCCccceE-ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEE
Confidence 22222211 1111234566 7999998654 4556789999999888776554 34578999999999998876
Q ss_pred -ecCCeEEEeccCCCCC
Q 013644 336 -GIEKTVKLWAPMPTDF 351 (439)
Q Consensus 336 -~~dg~i~iw~~~~~~~ 351 (439)
+.+|.|++||+.+++.
T Consensus 267 ~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKV 283 (300)
T ss_pred cCCCCeEEEEECCCCcE
Confidence 5689999999988764
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5e-27 Score=193.56 Aligned_cols=260 Identities=17% Similarity=0.237 Sum_probs=205.3
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc---
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE--- 90 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~--- 90 (439)
.++|.|++-+|+|.+|+.|+..|.|++|.+.++..+.. +.+|-..|+|+.|+. |+.+|++|+.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-~~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-LSAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-HHhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeecc
Confidence 57899999999999999998999999999999976655 489999999999999 999999999999999998742
Q ss_pred ----CceeeeEEecCCCCceEEEEEccCC-CcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 91 ----DGRMDTKRLGKHQGRVYKLAVEPGS-PYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 91 ----~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
....+...+..|+-+|+.+...+.+ +..+++++.|.++++||+..+..+..+.. ...+.+++.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------------p~si~av~l 225 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------------PSSIKAVAL 225 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------------CCcceeEEE
Confidence 2334556788999999999987753 22578999999999999999988777653 556999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccC
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM 245 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~ 245 (439)
+|.+ ..+++|+.+|.|.+.++..... ....+..=.+++.
T Consensus 226 Dpae-~~~yiGt~~G~I~~~~~~~~~~---------------------~~~~v~~k~~~~~------------------- 264 (476)
T KOG0646|consen 226 DPAE-RVVYIGTEEGKIFQNLLFKLSG---------------------QSAGVNQKGRHEE------------------- 264 (476)
T ss_pred cccc-cEEEecCCcceEEeeehhcCCc---------------------ccccccccccccc-------------------
Confidence 9976 8999999999999998875320 0111110011111
Q ss_pred CCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
......+.+|.+...|+|++ ++-||.+|++|+.||.+.|||+.+.++++++....++|+.+.+
T Consensus 265 ----------------~t~~~~~~Gh~~~~~ITcLa-is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 265 ----------------NTQINVLVGHENESAITCLA-ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ----------------cceeeeeccccCCcceeEEE-EecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 13556788888866799999 8999999999999999999999999999998866789999999
Q ss_pred cCCCcEEEE-EecCCeEEEecc
Q 013644 326 HPHIPMFAT-CGIEKTVKLWAP 346 (439)
Q Consensus 326 s~~~~~l~s-~~~dg~i~iw~~ 346 (439)
.|-.+-... -.....+-.|++
T Consensus 328 ~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 328 NPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred eccccceecccccCccCCchHh
Confidence 775443322 233334455554
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=179.59 Aligned_cols=288 Identities=9% Similarity=0.060 Sum_probs=206.0
Q ss_pred EEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce
Q 013644 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 60 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 139 (439)
..|+.|++ .|.+||+|+.||.|.|||+.+...- ..+.+|..+|.+++|+++|. .|++++.|..|.+||+..+.+.
T Consensus 26 a~~~~Fs~--~G~~lAvGc~nG~vvI~D~~T~~ia--r~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSR--WGDYLAVGCANGRVVIYDFDTFRIA--RMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEecc--CcceeeeeccCCcEEEEEccccchh--hhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCce
Confidence 78999999 9999999999999999999876644 55889999999999999998 5779999999999999999988
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEE
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (439)
+.+. ...+|....|+|...+.+++.-.+..-.+.++....... +..+.+ ..-.....
T Consensus 101 ~rir------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d----------~dln~sas 157 (405)
T KOG1273|consen 101 KRIR------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDD----------GDLNSSAS 157 (405)
T ss_pred eEEE------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCc----------cccccccc
Confidence 7776 366799999999876766666555555555554322100 000000 01111122
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCe
Q 013644 220 GLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 298 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~ 298 (439)
+..|.+.|+++++|. .|.+.+++..+- +++..++-.. ...|..+. ++..|++|+.-+.|..
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~----------------e~vas~rits-~~~IK~I~-~s~~g~~liiNtsDRv 219 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETL----------------ECVASFRITS-VQAIKQII-VSRKGRFLIINTSDRV 219 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchh----------------eeeeeeeech-heeeeEEE-EeccCcEEEEecCCce
Confidence 336889999999996 999999998765 3444444333 12478888 8999999999999999
Q ss_pred EEEEecCCC-------c--eeEeecc--cccceEEEeecCCCcEEEEEec-CCeEEEeccCCCCC-CCCCCchhh-hhhh
Q 013644 299 LFIWKKKGG-------K--LVRLMVG--DRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMPTDF-PPLPDNAEK-IMKA 364 (439)
Q Consensus 299 i~iwd~~~~-------~--~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~-~~~~~~~~~-~~~~ 364 (439)
||.|+++.- + +.+.++. ....=.+++|+.+|.|++.++. -..++||.-..|.+ +.+.+..+. ...+
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV 299 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV 299 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence 999997631 1 1122211 1123457889999999877764 46899999988877 666666533 3333
Q ss_pred hccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 365 NKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 365 ~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+ +++-...+++. ..|.+.+|.....+...
T Consensus 300 ~-whp~rp~i~si-~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 300 N-WHPVRPIIASI-ASGVVYIWAVVQVENWS 328 (405)
T ss_pred c-cccceeeeeec-cCCceEEEEeecccchh
Confidence 3 44444455666 56999999987766654
No 138
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=4.2e-26 Score=179.62 Aligned_cols=285 Identities=18% Similarity=0.283 Sum_probs=212.3
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCc-------c-----eeeeecCCcccEEEEEEeec-----CCCcEEEEecC
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-------E-----KFSYLSGHLDNIFQTRIMPF-----TDDRKIITSSA 79 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-------~-----~~~~~~~h~~~v~~~~~~~~-----~~~~~l~s~~~ 79 (439)
...+.|+|||..|++-+.|..+++|++.... . ...+.......|+..+|-+. ++..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568999999999999999999999974211 0 01111123456788888631 27789999999
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCce---EEEEEccCCCcEEEEeCCCCcEEEEEc-cCCCceeeEEeeccCCCCCCCC
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRV---YKLAVEPGSPYIIYSCGEDGFVQHFDL-RSDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
+.-|++||.-+++.........|.+.+ .+++|+|||.+++ ++....|+++|+ +.+............ ...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~----k~g 205 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKG----KFG 205 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcc----ccc
Confidence 999999999998876555544555544 5899999999644 567889999999 555433332221110 111
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 234 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 234 (439)
..+-+.+++|+|.....++.|+....+-||.-..+. +..++.+|.+.|+.+.|.++|+.|.+|.
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------PLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------------ceeeecccCCCeeeEEeccCcCeeccccc
Confidence 356689999999988899999998888888766543 3445579999999999999999888886
Q ss_pred -CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe-eCCCCceEEEeCCCCeEEEEecCC-CceeE
Q 013644 235 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSDCGHLFIWKKKG-GKLVR 311 (439)
Q Consensus 235 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 311 (439)
+..|..||++... .++..+..|... +-..+.| ..|++++|++|+.||.|++||+++ +..+.
T Consensus 271 k~dkIl~WDiR~~~---------------~pv~~L~rhv~~-TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 271 KDDKILCWDIRYSR---------------DPVYALERHVGD-TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred CCCeEEEEeehhcc---------------chhhhhhhhccC-ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 8899999998652 344455555442 1122221 568999999999999999999998 77788
Q ss_pred eecccccceEEEeecCCCcEEEEEecC
Q 013644 312 LMVGDRHVVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 312 ~~~~h~~~v~~~~~s~~~~~l~s~~~d 338 (439)
.+..|...++.++++|--+++|+++..
T Consensus 335 v~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccceecCcccceeeeccCc
Confidence 888899999999999998888888753
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=207.69 Aligned_cols=245 Identities=15% Similarity=0.251 Sum_probs=194.5
Q ss_pred eEEEEECC-CCCEEEEecCCCeEEEEeCCC--CcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 17 VNAVEFNS-TGDFLVSGSDDKLVIFWDWKD--RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 17 I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
+..|.|.. +.++|||++..|.|.+||+.. .......+..|+..++++.|++. ...+|++|+.||+|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeecccc
Confidence 44567765 567899999999999999987 33444456899999999999984 778999999999999999998776
Q ss_pred eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc-eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 94 MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
. ..+.+..+.|..+.|+|...+.|+++...|.+++||++.... ...+.. |.++|.|+.|+|+ +.+
T Consensus 169 ~--~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-----------H~GpV~c~nwhPn-r~~ 234 (839)
T KOG0269|consen 169 K--STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-----------HNGPVLCLNWHPN-REW 234 (839)
T ss_pred c--ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-----------ccCceEEEeecCC-Cce
Confidence 6 346678899999999998888899999999999999997543 222222 8899999999995 599
Q ss_pred EEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEec---CCeEEEEEccCCCC
Q 013644 173 FAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN---DELVYLFEKNMGLG 248 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~---d~~i~i~d~~~~~~ 248 (439)
||+|+.|+.|+|||+.+.+... ...-....++.++.|-|... .|++++ |-.|++||++.+.
T Consensus 235 lATGGRDK~vkiWd~t~~~~~~--------------~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY- 299 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRAKP--------------KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY- 299 (839)
T ss_pred eeecCCCccEEEEeccCCCccc--------------eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc-
Confidence 9999999999999998754211 11122356799999999874 566664 8899999998653
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
-+..++..|... ++.++|-+.|...+.+++.||.|..-.++++
T Consensus 300 --------------IP~~t~~eH~~~--vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 300 --------------IPYATFLEHTDS--VTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred --------------ccceeeeccCcc--ccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 455778888876 8888865666788999999998876655544
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.1e-25 Score=172.84 Aligned_cols=270 Identities=18% Similarity=0.227 Sum_probs=198.4
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC--ceeeeEEecCCCCceEEEEEcc-CCCcEEEEeCCCCcE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED--GRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFV 128 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i 128 (439)
+..+|..-|+++.|.+ .|+.+|+++.|++|+|||.+.. ........+.|.+.|..+.|.+ .-..++++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 4468999999999999 9999999999999999997543 3445566888999999999954 433489999999999
Q ss_pred EEEEccCCCc----eeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcc
Q 013644 129 QHFDLRSDSA----TRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 203 (439)
Q Consensus 129 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 203 (439)
.||.-...+. .+........ .....|+.+.|.|.. +-.||+++.||.+|||+....-.+........++
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLV------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred eeeeecccccccccceeEEEEEee------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 9997632111 1111111111 145679999999962 3689999999999999977644333322222111
Q ss_pred cccccccccCCCccEEEEEEccCC---CEEEEecCC------eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc
Q 013644 204 TFCPRHLIGKNNIHITGLAYSNTS---ELLISYNDE------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 274 (439)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (439)
.. ...+..+..+..|+.|+|.. .+|+.+++. .++||...... .+......+.+|..+
T Consensus 160 ~~--~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------------rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 160 NV--IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG------------RKWLKVAELPDHTDP 225 (361)
T ss_pred hc--cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc------------ceeeeehhcCCCCCc
Confidence 11 11224566778899999763 688888766 89999876542 233445566677766
Q ss_pred ceeeeEEeeCCCC----ceEEEeCCCCeEEEEecCCC--------------------ceeEeecccccceEEEeecCCCc
Q 013644 275 QTVKGVNFFGPND----EYVMSGSDCGHLFIWKKKGG--------------------KLVRLMVGDRHVVNQLEPHPHIP 330 (439)
Q Consensus 275 ~~v~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~h~~~v~~~~~s~~~~ 330 (439)
|+.++ |.|+- ..||+++.|| |+||++... +.+..+.+|++.|..+.|.-.|.
T Consensus 226 --I~di~-wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 226 --IRDIS-WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred --ceeee-eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee
Confidence 99999 67753 5789999999 999998731 24556778999999999999999
Q ss_pred EEEEEecCCeEEEeccC
Q 013644 331 MFATCGIEKTVKLWAPM 347 (439)
Q Consensus 331 ~l~s~~~dg~i~iw~~~ 347 (439)
.|++.|.||.||+|...
T Consensus 302 iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCCCceeeehhhh
Confidence 99999999999999864
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=1.2e-25 Score=192.65 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=102.9
Q ss_pred ccEEEEEEccC-CCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEE
Q 013644 216 IHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMS 292 (439)
Q Consensus 216 ~~i~~~~~~~~-~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~ 292 (439)
..|+.+.|.|- .+.|+++ .||.|++|.+..+..+.... .....+..|... |+++. |+| -...|++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~---------tPe~~lt~h~eK--I~slR-fHPLAadvLa~ 695 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM---------TPEKILTIHGEK--ITSLR-FHPLAADVLAV 695 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC---------Ccceeeecccce--EEEEE-ecchhhhHhhh
Confidence 45777888874 3555555 59999999998765443322 345677788775 99999 566 4578999
Q ss_pred eCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC
Q 013644 293 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP 352 (439)
Q Consensus 293 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 352 (439)
++.|.+|++||+.+++....+.+|.+.|..++|||+|+.+|+.+.||+|++|+...++..
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999876653
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=5.8e-26 Score=179.15 Aligned_cols=325 Identities=12% Similarity=0.186 Sum_probs=228.0
Q ss_pred cceeeee-eccccceEEEEECC-----CCCEEEEecCCCeEEEEeCCCCc--c-eeeeec-CCcccEEEEEEeecC--CC
Q 013644 4 INLCGKL-HGHKGCVNAVEFNS-----TGDFLVSGSDDKLVIFWDWKDRR--E-KFSYLS-GHLDNIFQTRIMPFT--DD 71 (439)
Q Consensus 4 ~~~~~~l-~~h~~~I~~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~--~-~~~~~~-~h~~~v~~~~~~~~~--~~ 71 (439)
++....+ ..|..+|..++|++ .-+.+||++. ..+.+|...... . +..+.. .|....+.++|+-.. .+
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 3444444 46889999999986 2356787776 578888876543 2 222222 477888899998632 24
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENS 151 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 151 (439)
.++|.++.-|.|+|.|+.+++.. ..+.+|...|+.+.++|+.+.++++++.|..|++|++++..++..+-...
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~--~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e----- 178 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCS--KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE----- 178 (385)
T ss_pred eeEEeecceeEEEEEecchhhhc--cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc-----
Confidence 58899999999999999877765 56889999999999999999999999999999999999999988875432
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC------C-------CcccccccccccCCCccE
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD------T-------PVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~i 218 (439)
.|...|.++.|++++ .++++++.|..|++|++...+....++.. . +...+..-....-|...|
T Consensus 179 ---gHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 179 ---GHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ---cccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 278889999999998 79999999999999999965433322111 1 111111111234566677
Q ss_pred EEEEEccCCCEEEEec-CCeEEEEEcc-CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC
Q 013644 219 TGLAYSNTSELLISYN-DELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 296 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d 296 (439)
-|+.|- |.++++-+ ++.|..|... -..... ...+++. .......+.-..........+ +.|-++.||.|...
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~-~vkp~es--~~Ti~~~~~~~~c~iWfirf~-~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIH-NVKPPES--ATTILGEFDYPMCDIWFIRFA-FDPWQKMLALGNQS 328 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhh-ccCCCcc--ceeeeeEeccCccceEEEEEe-ecHHHHHHhhccCC
Confidence 777765 46777766 8899999873 221100 0000000 001222333333332233344 67888999999999
Q ss_pred CeEEEEecCCCcee--Eeeccc--ccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 297 GHLFIWKKKGGKLV--RLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 297 g~i~iwd~~~~~~~--~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
|.|++||++..++. .++..+ ...|...+|+.|+.+|+....|++|.-||.
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 99999999887653 222222 257999999999999999999999999985
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=180.82 Aligned_cols=264 Identities=20% Similarity=0.290 Sum_probs=194.2
Q ss_pred eeccccceEEEEECCCC--CEEEEecCCCeEEEEeCCCC----------------cceeeeecCCcccEEEEEEeecCCC
Q 013644 10 LHGHKGCVNAVEFNSTG--DFLVSGSDDKLVIFWDWKDR----------------REKFSYLSGHLDNIFQTRIMPFTDD 71 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~----------------~~~~~~~~~h~~~v~~~~~~~~~~~ 71 (439)
.-+|.+.|+.+..++-| .+.|+-+..|.|.||++... +++.+ +.+|...-+.++|+|. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t-~~ghk~EGy~LdWSp~-~~ 224 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFT-FNGHKGEGYGLDWSPI-KT 224 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEE-ecccCccceeeecccc-cc
Confidence 34688888888888754 55666678899999997421 23333 4789999999999995 44
Q ss_pred cEEEEecCCCcEEEEEcccCcee-eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRM-DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
..|++|..-+.|++|...++... -...+.+|+..|..++|+|....+|++|+.||+|+|||++.+.....+....
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA---- 300 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA---- 300 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec----
Confidence 56888888899999999887643 2234678999999999999998899999999999999999985444443211
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--C
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--E 228 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 228 (439)
|...|+.+.|+..- .+||+|+.||+++|||++..+. . .+...+..|..+|+++.|+|.. .
T Consensus 301 -----h~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~------~------~pVA~fk~Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 301 -----HNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS------G------QPVATFKYHKAPITSIEWHPHEDSV 362 (440)
T ss_pred -----cCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC------C------CcceeEEeccCCeeEEEeccccCce
Confidence 77889999999987 4999999999999999998652 1 2334448899999999999865 4
Q ss_pred EEEEecCCeEEEEEccCCCCCCCCCCC-cccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeE
Q 013644 229 LLISYNDELVYLFEKNMGLGPSPLSLS-PEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHL 299 (439)
Q Consensus 229 ~l~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i 299 (439)
+++++.|.+|.+||+............ ...++. -+++.+--|.....+..+. |++ ...++++.+.||.-
T Consensus 363 iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d-lPpQLLFVHqGQke~Kevh-WH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQD-LPPQLLFVHQGQKEVKEVH-WHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred EEeccCCCcEEEEEeeccCChhhhccccccchhc-CCceeEEEecchhHhhhhe-eccCCCCeEEEeccccee
Confidence 555556999999999765432111111 111121 2345556666666688888 454 44678888877743
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=184.22 Aligned_cols=288 Identities=13% Similarity=0.204 Sum_probs=219.5
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
..+.|+++.|+| ....|++++.|++++||.+........+.+.-...+|.+.+|.|+|...+++++....++.||+.+
T Consensus 212 s~~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecC--CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 347899999999 999999999999999999976554444555556789999999999986788999999999999998
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
.+..+.-..... ....+.....+|++ ++++..+..|.|.+.-..+++.+..+. -.
T Consensus 290 ak~~k~~~~~g~--------e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K----------------ie 344 (514)
T KOG2055|consen 290 AKVTKLKPPYGV--------EEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK----------------IE 344 (514)
T ss_pred cccccccCCCCc--------ccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee----------------ec
Confidence 876544322111 12346677889987 799999999999999999887654322 25
Q ss_pred ccEEEEEEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC
Q 013644 216 IHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~ 294 (439)
+.+..++|+.+++.|+++ ++|.|++||++.. .+...+..... ..-++++ .|+++.|||+|+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----------------~~~~rf~D~G~-v~gts~~-~S~ng~ylA~GS 406 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----------------SCLHRFVDDGS-VHGTSLC-ISLNGSYLATGS 406 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCc----------------ceEEEEeecCc-cceeeee-ecCCCceEEecc
Confidence 678999999999766655 5999999999876 45555554332 2346666 789999999999
Q ss_pred CCCeEEEEecCC------CceeEeecccccceEEEeecCCCcEEEEEec--CCeEEEeccCCCCC-CCCCCch---hhhh
Q 013644 295 DCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPMPTDF-PPLPDNA---EKIM 362 (439)
Q Consensus 295 ~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iw~~~~~~~-~~~~~~~---~~~~ 362 (439)
..|.|.|||.++ .+++..+..-...|++++|+|++++||.+|. +..+++-.+.+... ..+|... +.+.
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 999999999654 3566666666678999999999999887764 67899988876654 3444322 2232
Q ss_pred hhhccccCcceEEEeCCCcEEEEEEec
Q 013644 363 KANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
++ .+++.+.+++.+..+|.+.+|.+.
T Consensus 487 c~-aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CM-AFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EE-EecCCCceEEeecCCCceeeEeec
Confidence 22 256667788888889999999874
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=4.5e-26 Score=189.76 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=219.1
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee-eeEEec--CCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM-DTKRLG--KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
.|..-|.++..+. ..+++++|+. |.|+|||+...... ....+. .....|.++.++|||+. |++|+.-.++.||
T Consensus 417 ~HGEvVcAvtIS~--~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt-LivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISN--PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT-LIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecC--CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce-EEeccccceeeee
Confidence 6778888888887 7888888875 78999999754321 112222 23467899999999985 5699999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
|+............. ..-.+.+++.+|+. ++.+++..||.|.|||+.+... ...+
T Consensus 493 DLAapTprikaelts---------sapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~---------------Vrqf 547 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTS---------SAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL---------------VRQF 547 (705)
T ss_pred eccCCCcchhhhcCC---------cchhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee---------------eecc
Confidence 998765432222111 12347889999987 8999999999999999998653 2334
Q ss_pred cCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 212 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
.+|...+.||.++++|..|.+|+ |++|+.||++.+ +.+..|.-...|.++. +.|.+.++
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlreg-------------------rqlqqhdF~SQIfSLg-~cP~~dWl 607 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG-------------------RQLQQHDFSSQIFSLG-YCPTGDWL 607 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhh-------------------hhhhhhhhhhhheecc-cCCCccce
Confidence 88999999999999999999998 999999999876 4444555555688888 79999999
Q ss_pred EEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccC
Q 013644 291 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE 370 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (439)
+.|-.++.+.+.... +.....+.-|...|.++.|.+.|+++++.+.|..+..|...-+....-......|.... .+.+
T Consensus 608 avGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCD-IS~d 685 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD-ISFD 685 (705)
T ss_pred eeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeee-eccC
Confidence 999999999888765 44455667789999999999999999999999999999986655433333444554433 6778
Q ss_pred cceEEEeCCCcEEEEEEe
Q 013644 371 DHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 371 ~~~~~~~s~dg~v~~w~~ 388 (439)
++++|++|.|....|+.+
T Consensus 686 dkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 686 DKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceEEEecCCCcceEEEEE
Confidence 899999999988777754
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-24 Score=167.66 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=200.8
Q ss_pred eccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc---eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE---KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
.+|.+-|+++.|.+.|+.+|||+.|++|+|||..+... .....+.|.+.|..+.|.+..-|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47999999999999999999999999999999755432 223346899999999998877899999999999999997
Q ss_pred ccc-------CceeeeEEecCCCCceEEEEEccCCC-cEEEEeCCCCcEEEEEccCCCceeeEEeec-cCCC-CCCCCce
Q 013644 88 IFE-------DGRMDTKRLGKHQGRVYKLAVEPGSP-YIIYSCGEDGFVQHFDLRSDSATRLFYCSS-FSEN-SKQPMNS 157 (439)
Q Consensus 88 ~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~-~~~~~~~ 157 (439)
=.. .+.+....+......|+.+.|.|... ..+++++.||.+|||+.-....+....... +... .....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 12334455777888999999999643 357899999999999876543333222111 0000 0111245
Q ss_pred eeeEEEeecCCC--CcEEEEeecC-----ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC---
Q 013644 158 IRLNAIVIDPRN--PNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--- 227 (439)
Q Consensus 158 ~~v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 227 (439)
.+..|+.|+|.. ..+||+|+.+ +.++||....... .......+..|..+|+.++|.|+-
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----------Kw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----------KWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----------eeeeehhcCCCCCcceeeeeccccCCc
Confidence 567889998742 3578888765 4788887654321 112222335889999999999973
Q ss_pred -CEEEEec-CCeEEEEEccCCCCCC--CCCCCccccc--ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 228 -ELLISYN-DELVYLFEKNMGLGPS--PLSLSPEDLQ--KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 228 -~~l~~~~-d~~i~i~d~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
.+||++. || |+||.+.....+. .....+.... ..+.+..+..|... |..+. |.-.|..|++.+.||.||+
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~--VWrv~-wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE--VWRVR-WNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc--eEEEE-EeeeeeEEeecCCCceeee
Confidence 5778876 77 9999998532111 1111111111 22344556777765 99999 7889999999999999999
Q ss_pred EecCC---CceeEeec
Q 013644 302 WKKKG---GKLVRLMV 314 (439)
Q Consensus 302 wd~~~---~~~~~~~~ 314 (439)
|...- .++...+.
T Consensus 315 Wkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 315 WKANYNNLWKCTSVLK 330 (361)
T ss_pred hhhhhhhhheeeeEEe
Confidence 98542 34444444
No 147
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=171.29 Aligned_cols=303 Identities=14% Similarity=0.125 Sum_probs=207.5
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
.+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+-..|...|+.+.-.| + +.|.+-+.|+.+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLI 80 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEE
Confidence 45678889999999999998876 888999999999999998877665336788899999987 4 7889999999999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC-cEEEEEcc-----------CCCceeeEEeeccCCCCC
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG-FVQHFDLR-----------SDSATRLFYCSSFSENSK 152 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-~i~iwd~~-----------~~~~~~~~~~~~~~~~~~ 152 (439)
+|++..+..+.. |.-.++++-|.+.. +...+... .+-.|+-+ ....++......
T Consensus 81 lw~ia~s~~i~i-----~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~------ 146 (323)
T KOG0322|consen 81 LWTIAYSAFISI-----HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSE------ 146 (323)
T ss_pred EEEccCcceEEE-----eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchh------
Confidence 999976554433 34455666665532 11222111 11122111 111111111111
Q ss_pred CCCceeeeEEEeecCC--CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEE
Q 013644 153 QPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 230 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 230 (439)
....+.+.+..+.-+ ...++++|.++|.+.+||+.++..+-.+....+ .......|..++.++.+.+.-..=
T Consensus 147 -~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k-----v~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 147 -RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK-----VESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred -ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc-----cccchhhccCcceeeeechhhcCC
Confidence 112344666554322 224677888999999999998743322221111 111225678899999998664443
Q ss_pred EEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce
Q 013644 231 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 231 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 309 (439)
++++ +..+..|.++..... .+......-.... +..+. +-||++.+|+++.|++||||+.++.++
T Consensus 221 isgga~dkl~~~Sl~~s~gs------------lq~~~e~~lknpG--v~gvr-IRpD~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGS------------LQIRKEITLKNPG--VSGVR-IRPDGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred cCCCccccceeeeeccccCc------------ccccceEEecCCC--ccceE-EccCCcEEeecccCCcEEEEEeccCCc
Confidence 4444 778888988654211 1112222222222 56666 789999999999999999999999999
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
+..++-|...|++++|+|+..++|+++.|++|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999986
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.9e-27 Score=203.63 Aligned_cols=255 Identities=18% Similarity=0.294 Sum_probs=215.3
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCc
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGR 105 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 105 (439)
+.+++....+-.+++|+.+. ...|...+.++..-. .++.+++|+.|..+.+|.+.....+ ..+.+|..+
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~-------~~~hsaav~~lk~~~--s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~~hesp 72 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE-------FVAHSAAVGCLKIRK--SSRSLVTGGEDEKVNLWAIGKPNAI--TSLTGHESP 72 (825)
T ss_pred ccccceeeeeeccccccchh-------hhhhhhhhceeeeec--cceeeccCCCceeeccccccCCchh--heeeccCCc
Confidence 34455555666788888643 246778888888755 7889999999999999998554444 458899999
Q ss_pred eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEE
Q 013644 106 VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 185 (439)
|.++.|++... +|++|+.+|+|++||++..+.++.+.+ |...+.++.|+|.+ .+++.|+.|+.+++|
T Consensus 73 IeSl~f~~~E~-LlaagsasgtiK~wDleeAk~vrtLtg-----------h~~~~~sv~f~P~~-~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 73 IESLTFDTSER-LLAAGSASGTIKVWDLEEAKIVRTLTG-----------HLLNITSVDFHPYG-EFFASGSTDTDLKIW 139 (825)
T ss_pred ceeeecCcchh-hhcccccCCceeeeehhhhhhhhhhhc-----------cccCcceeeeccce-EEeccccccccceeh
Confidence 99999999886 789999999999999999998888877 56678999999987 788999999999999
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccccccccc
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
|++...+ .....+|...+..+.|+|+|++++.++ |..+++||+..+ +.
T Consensus 140 D~Rk~Gc---------------~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----------------k~ 188 (825)
T KOG0267|consen 140 DIRKKGC---------------SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----------------KL 188 (825)
T ss_pred hhhccCc---------------eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc----------------cc
Confidence 9996542 223356888899999999999999997 799999999887 67
Q ss_pred ceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecC
Q 013644 265 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 265 ~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 338 (439)
...|..|... +..+. |+|..-++++|+.|+++++||+++.+.+.........|.+.+|+|++..+++|...
T Consensus 189 ~~ef~~~e~~--v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 189 SKEFKSHEGK--VQSLE-FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccc--ccccc-cCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 7788888876 88888 89999999999999999999999999998888778899999999999998887654
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-24 Score=191.35 Aligned_cols=250 Identities=13% Similarity=0.196 Sum_probs=197.1
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.|+...+.++|.| +|.+|++++.||.|++|+.......+ ..+..+...|.+++.... .|++|+.+++|.+|.+.
T Consensus 11 aht~G~t~i~~d~--~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDP--DGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcC--CCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEeeccc---ceEEeeccceEEEeeCC
Confidence 7888999999999 99999999999999999986652221 223337788888887554 47799999999999999
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCC
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 214 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
.++.-..+... ..++++++|+-+| .++|.|+.|-.|++.++..... ...+.+|
T Consensus 85 s~~~~~iL~Rf-----------tlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~---------------~~~lrgh 137 (933)
T KOG1274|consen 85 SGEEDTILARF-----------TLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQ---------------EKVLRGH 137 (933)
T ss_pred CCCccceeeee-----------eccceEEEEecCC-cEEEeecCceeEEEEeccccch---------------heeeccc
Confidence 88876666543 3458999999976 8999999999999999887542 2344889
Q ss_pred CccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 215 NIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 215 ~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
..+|.++.|+|++.+||+.+ ||.|++|++..+....... .+..-........+..++ |+|+|..++..
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~----------~v~k~n~~~~s~i~~~~a-W~Pk~g~la~~ 206 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT----------GVDKDNEFILSRICTRLA-WHPKGGTLAVP 206 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc----------cCCccccccccceeeeee-ecCCCCeEEee
Confidence 99999999999999999997 9999999998763221111 000001111122356666 89998888888
Q ss_pred CCCCeEEEEecCCCceeEeecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 294 SDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 294 ~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
..|+.|++|+..+++....+.. +...+..++|+|+|+|||+++.||.|.|||.++
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8999999999999988877764 334599999999999999999999999999986
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=179.46 Aligned_cols=297 Identities=13% Similarity=0.132 Sum_probs=216.3
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc--eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG--RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
..-+.++|++++|+|..+-+++++|..-|+|-+||+.+.+ ......+..|..+|.++.|+|.+...+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 3567889999999996445788999999999999995322 22334577899999999999988878889999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
-|++.......+.... ....+..+.|+.+. ..++.+..=|.+.+||+++... ....
T Consensus 262 ~D~~~~i~e~v~s~~~---------d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s--------------~~~~ 317 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDT---------DNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGS--------------EYEN 317 (498)
T ss_pred eeecchhhHHHhhcCc---------cceeeeeccccCCC-ccEEEeecccceEEEEeecCCc--------------cchh
Confidence 9999876554443311 24457788888877 4556666666999999998652 1222
Q ss_pred ccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 211 IGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
..-|...|.+++++|.. .+|++++ |++.+|||++.-.... .+......|.. .|.+.. |||.+-
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~------------sp~lst~~Hrr--sV~sAy-FSPs~g 382 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA------------SPFLSTLPHRR--SVNSAY-FSPSGG 382 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC------------Ccceecccccc--eeeeeE-EcCCCC
Confidence 35567799999999987 5677777 9999999998652211 01122234444 377777 899998
Q ss_pred eEEEeCCCCeEEEEecC----CCceeEeecccc------cceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCC-CC
Q 013644 289 YVMSGSDCGHLFIWKKK----GGKLVRLMVGDR------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-PD 356 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~----~~~~~~~~~~h~------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~-~~ 356 (439)
.|++.+.|..|+|||.. .-.+...+. |. -......|.|+..+++.|-.-..|-|++.+.++. ..+ ..
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 89999999999999973 233333333 32 1345678999999999999999999999998883 333 33
Q ss_pred chhhhhhhhccccCcc-eEEEeCCCcEEEEEEec
Q 013644 357 NAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 357 ~~~~~~~~~~~~~~~~-~~~~~s~dg~v~~w~~~ 389 (439)
....|..++.+++-.. +++.++.-|.+.+|--+
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccceeecccccceeccCCccceEEEEecC
Confidence 4446667776777555 55555667888888543
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.4e-23 Score=180.30 Aligned_cols=275 Identities=11% Similarity=0.118 Sum_probs=188.3
Q ss_pred ccceeeeeeccccceEEEEECCCCCEE-EEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEe-cCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFL-VSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITS-SAD 80 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d 80 (439)
+.++++.+.+|.. +.+++|+|+|+.+ ++++.++.|++||..+++....+ ..+. .+..++|+| +++.++++ +.+
T Consensus 20 t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~~~--~g~~l~~~~~~~ 94 (300)
T TIGR03866 20 TLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFALHP--NGKILYIANEDD 94 (300)
T ss_pred CCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEECC--CCCEEEEEcCCC
Confidence 3456677776644 6789999999876 56778899999999887665443 3333 356789999 88877654 568
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC-cEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG-FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
+.|++||+.+.+.+. .+. +...+.+++|+|++.. ++++..++ .+.+||.++++....... ...
T Consensus 95 ~~l~~~d~~~~~~~~--~~~-~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~d~~~~~~~~~~~~------------~~~ 158 (300)
T TIGR03866 95 NLVTVIDIETRKVLA--EIP-VGVEPEGMAVSPDGKI-VVNTSETTNMAHFIDTKTYEIVDNVLV------------DQR 158 (300)
T ss_pred CeEEEEECCCCeEEe--Eee-CCCCcceEEECCCCCE-EEEEecCCCeEEEEeCCCCeEEEEEEc------------CCC
Confidence 999999998765442 232 2244688999999984 55665554 577889887765443321 123
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe--cCCe
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDEL 237 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~ 237 (439)
..+++|+|++..+++++..++.|++||+.+++.+..+....+ .. .........++|+|++++++.+ .++.
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-------~~-~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-------GV-HPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-------cc-ccccCCccceEECCCCCEEEEEcCCCCe
Confidence 567899998844445556789999999998764332211100 00 0011234468899999875543 4778
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe-CCCCeEEEEecCCCceeEeeccc
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
+.+||..++ +....+.. .. .+.++. |+|+|++|+++ ..+|.|++||+.+++++..+...
T Consensus 231 i~v~d~~~~----------------~~~~~~~~-~~--~~~~~~-~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 231 VAVVDAKTY----------------EVLDYLLV-GQ--RVWQLA-FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEEEECCCC----------------cEEEEEEe-CC--CcceEE-ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 999998765 22222221 12 377888 89999999886 46899999999999999888754
Q ss_pred ccceEEEeecC
Q 013644 317 RHVVNQLEPHP 327 (439)
Q Consensus 317 ~~~v~~~~~s~ 327 (439)
...+.++++|
T Consensus 291 -~~~~~~~~~~ 300 (300)
T TIGR03866 291 -RLPWGVVVRP 300 (300)
T ss_pred -cccceeEeCC
Confidence 5558888875
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-24 Score=184.95 Aligned_cols=295 Identities=13% Similarity=0.133 Sum_probs=220.3
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
..+.+|++.|.++...| .|.+|++|+.||+|+||.+.++.++....+. +.|.|++|+|.+...++++.....+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceEE
Confidence 34679999999999999 9999999999999999999999998665554 689999999988765555555555666
Q ss_pred EEccCCCceee------EEee---cc--------CCC-----C----CCCCceeeeEEEeecCCCCcEEEEeecC---ce
Q 013644 131 FDLRSDSATRL------FYCS---SF--------SEN-----S----KQPMNSIRLNAIVIDPRNPNYFAVGGSD---EY 181 (439)
Q Consensus 131 wd~~~~~~~~~------~~~~---~~--------~~~-----~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~ 181 (439)
.+..-|..+.. +... .. ... . ..-.|...|..+.|+..| .+|++...+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcce
Confidence 65443311110 0000 00 000 0 001255678999999987 788887654 46
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
|.|+++...... .-+....+.+.++.|+|...+|++++...|++||+...
T Consensus 548 VliHQLSK~~sQ---------------~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq--------------- 597 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ---------------SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ--------------- 597 (733)
T ss_pred EEEEeccccccc---------------CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---------------
Confidence 889998875421 11134567899999999999999999999999999754
Q ss_pred cccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC-ceeEeecccccceEEEeecCCCcEEEEEecCCe
Q 013644 262 REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT 340 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 340 (439)
..++.+..... .+..++ .+|.|..|+.|+.|+.+..||+.-. ++.+.+..|...+++|+|++.-.++++|+.||+
T Consensus 598 -elvKkL~tg~k--wiS~ms-ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 598 -ELVKKLLTGSK--WISSMS-IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred -HHHHHHhcCCe--eeeeee-ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 34444443333 388888 8999999999999999999998754 677888999999999999999999999999999
Q ss_pred EEEecc-------CCCC---CCCCCCchhh----hhhhhccccCcceEEEeCCCcEEEEE
Q 013644 341 VKLWAP-------MPTD---FPPLPDNAEK----IMKANKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 341 i~iw~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~v~~w 386 (439)
+.|+.- ++.. +..+++|... |+... |++...++++.++||++++|
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~-wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI-WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec-ccCCCceEEecCCCceEEee
Confidence 998852 1111 2456666655 44444 67777899999999999998
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=8.9e-25 Score=187.15 Aligned_cols=311 Identities=13% Similarity=0.146 Sum_probs=217.1
Q ss_pred EEEEeecC-CCcEEEEecCCCcEEEEEcccCcee----eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC
Q 013644 62 QTRIMPFT-DDRKIITSSADGQVRLGQIFEDGRM----DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 62 ~~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
+..|++.. ....|+.+..+|.|.++|....... .......|...|..+.|-| ++.+|++++.|.++++||+++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc
Confidence 35666533 3456788889999999998643211 1234667999999999999 6668999999999999999998
Q ss_pred CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCC----------CCC-CCCcccc
Q 013644 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP----------ISS-DTPVDTF 205 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~-~~~~~~~ 205 (439)
.....-... .|...+.+++|.|.++..|++|+.||.|.|||++....-.. ... ..+.+..
T Consensus 133 ~l~G~~~~~---------GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 133 RLVGGRLNL---------GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeecceeec---------ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 876652111 17888999999999999999999999999999986541110 000 0111111
Q ss_pred c-ccccccCCCccEEE---EEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC-CCcceee
Q 013644 206 C-PRHLIGKNNIHITG---LAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVK 278 (439)
Q Consensus 206 ~-~~~~~~~~~~~i~~---~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 278 (439)
. ......++...|.+ +.+..|...||+++ |+.|++||++.........- .....+..+ .....+.
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep--------~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP--------RGSDKYPTHSKRSVGQV 275 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC--------CcccCccCcccceeeeE
Confidence 0 01112344455555 55666777777664 99999999987643322110 011111111 1122366
Q ss_pred eEEeeCCCCceEEEeCCCCeEEEEecCCC--ceeEeecccccc--eEEEeecCCCcEEEEEecCCeEEEeccCCCCC--C
Q 013644 279 GVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--P 352 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--~ 352 (439)
++. ....|.+|++.+.|+.|++|++.+. .++..+.++... -..-..+|++.+|++|+.|....+|.+..-+. .
T Consensus 276 nL~-lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 276 NLI-LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEE-ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 776 6777888888888999999998764 344555555421 12234689999999999999999999987654 6
Q ss_pred CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 353 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
.+.+|...|..+.|.......+++++.|..+++|++.++
T Consensus 355 ~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 677899999999988888888899999999999999544
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=168.98 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=162.2
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
..+.+|.+.|++++|+.+|++ |++++.|+.|++|+++.......-...... ...-.+.+.|.|+-..+++..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-------e~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNV-------EYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred hhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccc-------cCCCceEEEECCCcceEEEEE
Confidence 347899999999999999995 789999999999999874321110000000 122357899999986777777
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCC
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 255 (439)
-....+++|.+...+--... .+....-...+...|...+..+-...+++++++++ |..|.+|+++ +
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~---~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G--------- 218 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGS---HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G--------- 218 (420)
T ss_pred ccCCEEEEEEeeecccCCCC---cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C---------
Confidence 77779999998765431111 01111111234466788888898899999999997 9999999998 3
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec---CCC-----ceeEeecccccceEEEeecC
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK---KGG-----KLVRLMVGDRHVVNQLEPHP 327 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~---~~~-----~~~~~~~~h~~~v~~~~~s~ 327 (439)
+.+..+...... -...+ .||+|+++++++----|++|.. +.| ..+..++||+..|..++|++
T Consensus 219 -------q~L~~idtnq~~--n~~aa-vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 219 -------QLLQSIDTNQSS--NYDAA-VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred -------ceeeeecccccc--cccee-eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 345555544443 33334 8999999999999888999984 223 34567889999999999999
Q ss_pred CCcEEEEEecCCeEEEeccC
Q 013644 328 HIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 328 ~~~~l~s~~~dg~i~iw~~~ 347 (439)
+.+.++|.+.||+++|||.+
T Consensus 289 ~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CcceeEEEecCCcEEEeecc
Confidence 99999999999999999975
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.8e-24 Score=174.51 Aligned_cols=288 Identities=12% Similarity=0.184 Sum_probs=200.2
Q ss_pred EEEECCCCCEEEEecC-C--CeEEEEeCCCCcceeeeecCCc----ccEEEEEEeec-----CCCcEEEEecCCCcEEEE
Q 013644 19 AVEFNSTGDFLVSGSD-D--KLVIFWDWKDRREKFSYLSGHL----DNIFQTRIMPF-----TDDRKIITSSADGQVRLG 86 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~-d--g~i~iw~~~~~~~~~~~~~~h~----~~v~~~~~~~~-----~~~~~l~s~~~dg~i~iw 86 (439)
.+..-|+..+++.|-. | ..+-+|=+.....- ++..|. ..-.|+.|... ..|+++|.|+.|..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n--lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN--LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc--eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 4455675566665532 2 33444433332211 111221 22346666542 146899999999999999
Q ss_pred EcccCcee-eeE------------------EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeecc
Q 013644 87 QIFEDGRM-DTK------------------RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 87 ~~~~~~~~-~~~------------------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 147 (439)
|+.-...+ +.. .-.+|+..|..++|+..-+++|++|+.|.+|++||+.++++...+..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~--- 284 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH--- 284 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh---
Confidence 98532211 111 12369999999999999888999999999999999999999888864
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 227 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (439)
|...|.++.|+|..+.+|++|+.|+++.++|.|.... . ..
T Consensus 285 --------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----------------------s----~~------ 324 (463)
T KOG0270|consen 285 --------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----------------------S----GK------ 324 (463)
T ss_pred --------cCCceeEEEecCCCceEEEeccccceEEeeeccCccc----------------------c----Cc------
Confidence 6778999999999999999999999999999985210 0 00
Q ss_pred CEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC-CceEEEeCCCCeEEEEecCC
Q 013644 228 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 228 ~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~ 306 (439)
-|.+.. .|-.++ |.|. ...+++++.||.++-+|++.
T Consensus 325 ------------~wk~~g------------------------------~VEkv~-w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 325 ------------EWKFDG------------------------------EVEKVA-WDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred ------------eEEecc------------------------------ceEEEE-ecCCCceeEEEecCCceEEeeecCC
Confidence 111110 155555 4443 35677888999999999876
Q ss_pred C-ceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccc---cCcceEEEeCCCc
Q 013644 307 G-KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG---REDHSRITLTPDV 381 (439)
Q Consensus 307 ~-~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg 381 (439)
. +++.++++|.++|.++++++.-+ +|+|++.|+.|++|++..........|.-.+-....+. .....++.++..+
T Consensus 362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc
Confidence 5 89999999999999999987655 79999999999999997666544444433222222222 2334666667777
Q ss_pred EEEEEEeccccee
Q 013644 382 IMHVLRLQRRQTL 394 (439)
Q Consensus 382 ~v~~w~~~~~~~~ 394 (439)
.+++|++.+....
T Consensus 442 ~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 442 VLRVWDIFTNSPV 454 (463)
T ss_pred eEEEeecccChhH
Confidence 8999999877554
No 156
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=7.1e-24 Score=165.08 Aligned_cols=260 Identities=19% Similarity=0.310 Sum_probs=194.8
Q ss_pred eccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCC-CcEEEEecCCCcEEEEEc
Q 013644 11 HGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD-DRKIITSSADGQVRLGQI 88 (439)
Q Consensus 11 ~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~~ 88 (439)
.+|+-.|.++.|-| |.-.+.+++-|.+++|||..+.+....+ ..++.|++-+++|..- ..++|+|..+-.|++.|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 57889999999999 6668899999999999999998766654 4667899999998543 456778888999999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeec--cCC-CCCCCCceeeeEEEe
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSS--FSE-NSKQPMNSIRLNAIV 164 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~v~~~~ 164 (439)
.++... +.+.+|.+.|.++.|+|...++|++|+.||.|++||++.- .+...+..++ .++ ......|.+.++.++
T Consensus 176 ~SGs~s--H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 176 ASGSFS--HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred cCCcce--eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 988776 6699999999999999999999999999999999999875 3444443332 111 122456889999999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE-ecCCeEEEEEc
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEK 243 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~d~~i~i~d~ 243 (439)
|..++ .++++.+.|..+++|+..+++.... .+.+..........+. +. +.+...++. -.++.+.++++
T Consensus 254 ~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~--------~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~ 322 (397)
T KOG4283|consen 254 WTSDA-RYLASCGTDDRIRVWNMESGRNTLR--------EFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNL 322 (397)
T ss_pred ecccc-hhhhhccCccceEEeecccCccccc--------ccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEc
Confidence 99987 8999999999999999998763211 1111100011111111 22 223333333 34788888888
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
-.+ ..++.+..|.. .+.+.. +.|+=+...+|..|+.|..|-.
T Consensus 323 ~sg----------------s~ir~l~~h~k--~i~c~~-~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 323 LEG----------------SFVRRLSTHLK--RINCAA-YRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCc----------------eEEEeeecccc--eeeEEe-ecCchhhhhccccCCccccccc
Confidence 776 57778888843 477666 7889899999999999999975
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=204.82 Aligned_cols=253 Identities=14% Similarity=0.269 Sum_probs=202.3
Q ss_pred cceEEEEECCCCCE----EEEecCCCeEEEEeCCCC-----cceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 15 GCVNAVEFNSTGDF----LVSGSDDKLVIFWDWKDR-----REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 15 ~~I~~~~~s~~~~~----l~t~~~dg~i~iw~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
..-+.++|.+.|.. ||.|..||.|.+||...- ..+......|++.|..+.|+++ .+++||+|+.||.|.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEE
Confidence 45678999987755 888999999999998652 1233345789999999999994 5669999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
||+...+......-....+.|.+++|+..-.++|++++.+|++.|||++..+.+..+.... ....+..++|
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~---------~~~~~S~l~W 214 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP---------GRMHCSVLAW 214 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC---------Cccceeeeee
Confidence 9998754432211223567899999999988999999999999999999987665554321 1245788999
Q ss_pred cCCCCcEEEEeecCc---eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEE
Q 013644 166 DPRNPNYFAVGGSDE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFE 242 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d 242 (439)
+|++...+++++.|. .|.+||+|...
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~as--------------------------------------------------- 243 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFAS--------------------------------------------------- 243 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeecccccC---------------------------------------------------
Confidence 999888888888764 57788877532
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
...+.+.+|... |.++.|-..|.++|++++.|++|.+|+.++++.+..+......+..
T Consensus 244 --------------------sP~k~~~~H~~G--ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 244 --------------------SPLKILEGHQRG--ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred --------------------Cchhhhcccccc--eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 244666777776 8888844445589999999999999999999999999887789999
Q ss_pred EeecCCCc-EEEEEecCCeEEEeccCCCC
Q 013644 323 LEPHPHIP-MFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 323 ~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 350 (439)
+.|.|... .++.++.||.|.|+.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999877 78899999999999987654
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-24 Score=170.06 Aligned_cols=289 Identities=15% Similarity=0.150 Sum_probs=200.7
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCC-Cc
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ-GR 105 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~ 105 (439)
..+|++-..|.|++||..+++.+.. ++++...++.+.|........+.+++.||+|++||++...........++. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 4588888899999999999766555 588999999999986324567889999999999999988877767777776 56
Q ss_pred eEEEEEccCCCcEEEEeCC----CCcEEEEEccCCCc-eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc
Q 013644 106 VYKLAVEPGSPYIIYSCGE----DGFVQHFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE 180 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 180 (439)
..+++..-.+. ++++|+. +-.|.+||++..+. +..+... |...|+++.|+|.++++|++|+.||
T Consensus 120 f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS----------H~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 120 FICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNES----------HNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred ceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhh----------ccCcceeEEecCCCCCeEEeecccc
Confidence 77777765554 6766653 66799999998876 4444322 7888999999999999999999999
Q ss_pred eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEecCCeEEEEEccCCCCCCCCCCCccc
Q 013644 181 YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLGPSPLSLSPED 258 (439)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 258 (439)
.|.+||+..... +. .....-.+...|.++.|..++ +++.....+...+|+++.+........+...
T Consensus 189 LvnlfD~~~d~E------eD------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~ 256 (376)
T KOG1188|consen 189 LVNLFDTKKDNE------ED------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS 256 (376)
T ss_pred eEEeeecCCCcc------hh------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence 999999986421 00 011113456779999999888 6555666999999999887422211111000
Q ss_pred ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEEecC---C---CceeEeecc-cccceEEEeecCCCc
Q 013644 259 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKK---G---GKLVRLMVG-DRHVVNQLEPHPHIP 330 (439)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~~~~s~~~~ 330 (439)
.. ......+...+.... ...+...++.++. -|...++-+. + .+.+..+++ |...|+++.|...+.
T Consensus 257 ~~------d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 257 AD------DLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND 329 (376)
T ss_pred hh------hHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc
Confidence 00 000000111122221 1234445544444 4555554432 2 345566776 667889999988888
Q ss_pred EEEEEecCCeEEEecc
Q 013644 331 MFATCGIEKTVKLWAP 346 (439)
Q Consensus 331 ~l~s~~~dg~i~iw~~ 346 (439)
++.|||.||.+.+|..
T Consensus 330 ~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeeccCCCceEEEEec
Confidence 9999999999999996
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.2e-24 Score=174.37 Aligned_cols=238 Identities=21% Similarity=0.278 Sum_probs=179.6
Q ss_pred CCEEEEecCCCeEEEEeCCCCcce--e------------------eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREK--F------------------SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~--~------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
|+|+|.|..|..|.|||+.-...+ . ....+|+..|.+++|... -.+.||+|+.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEE
Confidence 689999999999999998422110 0 012368889999999862 4568999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce-eeEEeeccCCCCCCCCceeeeEEEe
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
||+.++++. ..+..|.+.|.++.|+|..+.+|++|+.|++|.+.|.+..... ..+. ..+.|-.++
T Consensus 271 WD~~~g~p~--~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk------------~~g~VEkv~ 336 (463)
T KOG0270|consen 271 WDVDTGKPK--SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK------------FDGEVEKVA 336 (463)
T ss_pred EEcCCCCcc--eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE------------eccceEEEE
Confidence 999998887 4477899999999999999989999999999999999953222 2222 255689999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEE
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFE 242 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d 242 (439)
|+|...+.+++++.||.|+-+|+|... .+.....+|..+|.++++++.- .++++++ ++.+++|+
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--------------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--------------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 999998999999999999999999854 3344558899999999999876 4566665 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcce-eeeEEeeCCCC-ceEEEeCCCCeEEEEecCCCcee
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT-VKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLV 310 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 310 (439)
+.... ......|..... ..|.+ +.|+- -+++.|+..+.+++||+.+...+
T Consensus 403 ~~~~~-----------------~~~v~~~~~~~~rl~c~~-~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDS-----------------PKSVKEHSFKLGRLHCFA-LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCC-----------------Ccccccccccccceeecc-cCCCcceEEEecCccceEEEeecccChhH
Confidence 87642 122222222111 23333 34444 46788888889999998876544
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=1.3e-23 Score=170.51 Aligned_cols=321 Identities=18% Similarity=0.230 Sum_probs=213.9
Q ss_pred ccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcc--------eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 14 KGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRRE--------KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 14 ~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
..+|..+.|.++.. .||||+.|..|++|.+..... ....+..|...|+++.|+| +|++|++|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceEE
Confidence 46899999999765 999999999999998864321 2334678999999999999 999999999999999
Q ss_pred EEEcc--------c------CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 85 LGQIF--------E------DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 85 iw~~~--------~------~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
+|... + ...+....+.+|...|..++|+|++. ++++++-|..+++||+..++....+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~d------ 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDD------ 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeeccc------
Confidence 99876 1 12344566788999999999999998 577999999999999999998887765
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC-CCccccc-----ccccc--cCCCccEEEEE
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD-TPVDTFC-----PRHLI--GKNNIHITGLA 222 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~-----~~~~~--~~~~~~i~~~~ 222 (439)
|...+..++|.|-+ +++++-+.|...+.+.+...+.+...... .+..... ...++ ..-..-...++
T Consensus 164 -----h~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 164 -----HEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred -----cccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 67779999999987 88999888887777777655443322100 0000000 00000 11123456788
Q ss_pred EccCCCEEEEec-----CCeE-----EEEEccCCCCCCCCCCCccc--ccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 223 YSNTSELLISYN-----DELV-----YLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 223 ~~~~~~~l~~~~-----d~~i-----~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
|+|+|.+|++.. .+.+ ++|+-..-..|....-.+.. +.-.-.+..+.-.... .....+.-|.+-.+
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~--~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLS--SEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccc--ccccccccccceEE
Confidence 999999888642 3333 33332211111000000000 0000000000000000 00001012344445
Q ss_pred EEeCCCCeEEEEecCCCceeEeecc-cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC
Q 013644 291 MSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP 352 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 352 (439)
|.++. +.|++||.++..++..... |-..|+.++|++||..|+..|.||...+-.++..++-
T Consensus 316 aiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 316 AIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 55554 6899999998888766543 6689999999999999999999999888877776654
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=4.8e-23 Score=165.76 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=183.7
Q ss_pred cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC--------------ceeeeEEecCCCCceEEEEEccCCCcEE
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED--------------GRMDTKRLGKHQGRVYKLAVEPGSPYII 119 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~--------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l 119 (439)
.+|.+.++.+.-.+..+..+.++-+..|.|+||++... +..+...+.+|...=..++|+|-....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 46788888888887545667777788999999998521 1233466788999999999999433346
Q ss_pred EEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC
Q 013644 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 199 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 199 (439)
++|..-+.|++|...++.-.. ....+ ..|...|-.++|+|.....|++++.||+|+|||+|.+..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~v--d~~Pf------~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------- 292 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKV--DQRPF------TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------- 292 (440)
T ss_pred ccCccccceEeeeeccCceee--cCccc------cccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------
Confidence 688888899999998864321 11111 127888999999999889999999999999999998531
Q ss_pred CCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeee
Q 013644 200 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 279 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (439)
+.....+.|... |+.
T Consensus 293 ---------------------------------------------------------------~~~~~~kAh~sD--VNV 307 (440)
T KOG0302|consen 293 ---------------------------------------------------------------KAAVSTKAHNSD--VNV 307 (440)
T ss_pred ---------------------------------------------------------------cceeEeeccCCc--eee
Confidence 011122455554 666
Q ss_pred EEeeCCCCceEEEeCCCCeEEEEecCC---CceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCCCC----
Q 013644 280 VNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF---- 351 (439)
Q Consensus 280 ~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~---- 351 (439)
+. |+..-.+||+|+.||+++|||+++ ++++..|+-|..+|++|.|+|... .|+++|.|..|.|||+.-..-
T Consensus 308 IS-Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 308 IS-WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EE-ccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 66 676667999999999999999764 578899999999999999999654 788889999999999853221
Q ss_pred --------CCCC-------CchhhhhhhhccccCcceEEEeCCCcEEEEE
Q 013644 352 --------PPLP-------DNAEKIMKANKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 352 --------~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w 386 (439)
..++ .....+-.+.|....+.++|+-+-||- .||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 1122 123444455555556778999999984 444
No 162
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.6e-25 Score=192.21 Aligned_cols=238 Identities=18% Similarity=0.316 Sum_probs=200.8
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
+.+..|...|.++..-..++.+++|+.|-.+-+|.+.....+.. +.+|..+|.++.|++ +..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S-~~~hespIeSl~f~~--~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS-LTGHESPIESLTFDT--SERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe-eeccCCcceeeecCc--chhhhcccccCCceeeee
Confidence 45667999999999977889999999999999999887766655 579999999999999 999999999999999999
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
+++.+.+ +.+.+|...+.++.|+|-+.+ +++|+.|+.+++||++...+...+.. |...+..+.|+|
T Consensus 99 leeAk~v--rtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s-----------~~~vv~~l~lsP 164 (825)
T KOG0267|consen 99 LEEAKIV--RTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKS-----------HTRVVDVLRLSP 164 (825)
T ss_pred hhhhhhh--hhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecC-----------CcceeEEEeecC
Confidence 9877665 569999999999999999984 68999999999999998877777654 566799999999
Q ss_pred CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCC
Q 013644 168 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMG 246 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 246 (439)
+| .+++.|++|..++|||+..++... .+..|...+..+.|+|..-+++.|+ |+.+++||+++-
T Consensus 165 ~G-r~v~~g~ed~tvki~d~~agk~~~---------------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 165 DG-RWVASGGEDNTVKIWDLTAGKLSK---------------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred CC-ceeeccCCcceeeeeccccccccc---------------ccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence 87 899999999999999999887432 2266788999999999999999997 999999999753
Q ss_pred CCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC
Q 013644 247 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 297 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg 297 (439)
+.+...... ...|.+.. |+|+++.+++|....
T Consensus 229 ----------------e~I~s~~~~--~~~v~~~~-fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 229 ----------------EVISSGKPE--TDGVRSLA-FNPDGKIVLSGEQIS 260 (825)
T ss_pred ----------------EEeeccCCc--cCCceeee-ecCCceeeecCchhh
Confidence 222222222 33488888 899999999987653
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=5e-23 Score=177.76 Aligned_cols=275 Identities=15% Similarity=0.206 Sum_probs=209.1
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
.|..++|-|||..|+.+.. ..+.+||...+..+.. +++|++.|++++|+. +|..+++|+.|..|.+|+-.-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt-LKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP-LKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccc-cccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee-
Confidence 7999999999988877754 4799999999876655 689999999999999 9999999999999999986543332
Q ss_pred eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE
Q 013644 96 TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV 175 (439)
Q Consensus 96 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 175 (439)
-..|.+.|.|+.|+|-.. .|++++-. ..-+|........+.- ...++.+.+|..+| .+|+.
T Consensus 89 ---kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V~K~k-------------ss~R~~~CsWtnDG-qylal 149 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSVSKHK-------------SSSRIICCSWTNDG-QYLAL 149 (1081)
T ss_pred ---eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhHHhhh-------------hheeEEEeeecCCC-cEEEE
Confidence 235999999999999886 56677643 4677877655433221 25578999999987 89999
Q ss_pred eecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-----CEEEEec-CCeEEEEEccCCCCC
Q 013644 176 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-----ELLISYN-DELVYLFEKNMGLGP 249 (439)
Q Consensus 176 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~-d~~i~i~d~~~~~~~ 249 (439)
|-.+|+|.+-+-...+. .......+...+|.+++|+|.. ..+++.. ..++..|.+...
T Consensus 150 G~~nGTIsiRNk~gEek-------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--- 213 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNGEEK-------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--- 213 (1081)
T ss_pred eccCceEEeecCCCCcc-------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence 99999999875433221 1122235678899999999874 4666666 777777776543
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCC
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 329 (439)
.+.. ...-.-...|+. +-++|.|+..|+.|+.+.+|-.+ |-.+.++......|+.++..|++
T Consensus 214 --------------~Igk--~r~L~FdP~Cis-Yf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 214 --------------QIGK--DRALNFDPCCIS-YFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred --------------eecc--cccCCCCchhhe-eccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCC
Confidence 1110 011111145666 56899999999999999999754 66777776667799999999999
Q ss_pred cEEEEEecCCeEEEeccCC
Q 013644 330 PMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~~~ 348 (439)
++++.|+.||+|..|++..
T Consensus 276 Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ceEEEEEccCeeehhhhHH
Confidence 9999999999999998753
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1e-24 Score=199.14 Aligned_cols=289 Identities=14% Similarity=0.173 Sum_probs=213.3
Q ss_pred EEEECCCCC-EEEEe----------cCCCeEEEEeCCCCcce-----eeeecCCcccEEEEEEeecCCCc----EEEEec
Q 013644 19 AVEFNSTGD-FLVSG----------SDDKLVIFWDWKDRREK-----FSYLSGHLDNIFQTRIMPFTDDR----KIITSS 78 (439)
Q Consensus 19 ~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~----~l~s~~ 78 (439)
.++|+|.+. ++|+| +.+.++-||.+.-.... ... ..-....+.++|.+ .+. +|+.|.
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s-~~s~~rF~kL~W~~--~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS-LQSSNRFNKLAWGS--YGSHSHGLIAGGL 87 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccc-ccccccceeeeecc--cCCCccceeeccc
Confidence 478999886 56654 33556667765432211 111 13345788999998 444 488899
Q ss_pred CCCcEEEEEcccC----ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCC
Q 013644 79 ADGQVRLGQIFED----GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQP 154 (439)
Q Consensus 79 ~dg~i~iw~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 154 (439)
.||.|.+||...- ..........|.+.|..+.|++....+|++|+.||.|.|||+...+....... .
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~---------~ 158 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS---------Q 158 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC---------C
Confidence 9999999998642 22223456789999999999999888999999999999999998554433321 1
Q ss_pred CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 155 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
.....|.+++|+..-.++|++++.+|.+.|||++..+.+ .
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-------------------------i--------------- 198 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-------------------------I--------------- 198 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-------------------------c---------------
Confidence 135669999999988889999999999999999975421 1
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-ceEEEeCCC---CeEEEEecCCC-ce
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDC---GHLFIWKKKGG-KL 309 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-~~l~~~~~d---g~i~iwd~~~~-~~ 309 (439)
.+..+.....+..+. |+|+. ..|++++.| -.|.+||++.. ..
T Consensus 199 --------------------------------~ls~~~~~~~~S~l~-WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 199 --------------------------------KLSDTPGRMHCSVLA-WHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred --------------------------------ccccCCCccceeeee-eCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 111111111255566 67765 344455443 36999998754 56
Q ss_pred eEeecccccceEEEeecCCC-cEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 310 VRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
++++++|...|.++.|++.+ .+|+|++.|+.|.+|+.++++. ..++.....+..+.|...++..+.+.+-||.|-++.
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 78889999999999999977 7999999999999999999886 677777778888888888888888999999999999
Q ss_pred ecccc
Q 013644 388 LQRRQ 392 (439)
Q Consensus 388 ~~~~~ 392 (439)
+....
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 97665
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=1.8e-23 Score=165.22 Aligned_cols=270 Identities=15% Similarity=0.191 Sum_probs=194.0
Q ss_pred cccceEEEEECCC----CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 13 HKGCVNAVEFNST----GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 13 h~~~I~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
|...-..++|+-+ ..++|.|+.-|.|+|.|+.+++.... +.+|...|+.+.+.|. +.+++++++.|.+|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-YRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-eeccCccchhhhcCCC-CCcEEEEecCCceEEEEec
Confidence 6777888888764 35789999999999999999876655 5799999999999993 5678999999999999999
Q ss_pred ccCceeeeE-EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEee-----------------ccCCC
Q 013644 89 FEDGRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCS-----------------SFSEN 150 (439)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~ 150 (439)
++..++... -+.+|.+.|.++.|++++. .+++++.|.+|++|++...+....+... .++..
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 998877543 2568999999999999998 5779999999999999854332222111 11111
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc-CCcccCCCCCCCCcccccccccccCCCccEE--EEEEccCC
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHIT--GLAYSNTS 227 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~ 227 (439)
.....|...|.|+.|-- +++++=+.++.|..|..- -.+.+.....+....+.. ..+.-....|. ..+|.|-+
T Consensus 245 st~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~--~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL--GEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeee--eEeccCccceEEEEEeecHHH
Confidence 13345777777777763 688888888999999873 222211111111111111 11122233344 44566778
Q ss_pred CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 228 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 228 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
+.||.+. .|.+++||++...++ ...++..+.....|...+ |+.||.+|+...+|+.|.-||.-
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~--------------~~ttl~~s~~~~tVRQ~s-fS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPP--------------KCTTLTHSKSGSTVRQTS-FSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCc--------------cCceEEeccccceeeeee-ecccCcEEEEEeCCCcEEEEEee
Confidence 9999997 999999999876322 223444455555688888 89999999999999999999853
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=1.6e-22 Score=173.67 Aligned_cols=121 Identities=16% Similarity=0.292 Sum_probs=100.2
Q ss_pred cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC-------ceeEeecccccceEEEeecCC-CcEEEEEecCCeEEEec
Q 013644 274 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-------KLVRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWA 345 (439)
Q Consensus 274 ~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~ 345 (439)
...|+.+.|-.-|.+.||.+++||.|++|.+..+ .+...+..|...|+++.|+|- ...|++++.|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 3446777733336789999999999999998754 345678889999999999995 35899999999999999
Q ss_pred cCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 346 PMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+.+.+. ..+.+|...+..+. |+.++..+++.+.||++++++-..++.-.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~A-WSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIA-WSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred hhhhhhhheeccCcCceeEEE-ECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 988876 78889999998887 67889999999999999999876665443
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=9.7e-23 Score=169.82 Aligned_cols=263 Identities=14% Similarity=0.210 Sum_probs=199.4
Q ss_pred ceEEEEECCCCC-EEEEecCCCeEEEEeCCCCc---ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 16 CVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRR---EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 16 ~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
.+.++.|+.... .+++.+.|..+++|.-.... ++.....+. .-.|++... ...++++|+..+.|+|||++.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~- 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS--QSLYEISGGQSGCVKIWDLRA- 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh--cceeeeccCcCceeeehhhHH-
Confidence 488999987664 23344578899999754431 222222222 334444444 457999999999999999973
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
....+.+.+|...|+++.++.... .+++++..|.|.+..+.++.....+.... ...|.-+.|+|....
T Consensus 111 -kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~s----------gqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 111 -KLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDS----------GQSVRLLRYSPSKRF 178 (673)
T ss_pred -HHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCC----------CCeEEEeecccccce
Confidence 334467899999999999998887 47899999999999999987766665421 234678999998888
Q ss_pred EEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEE-EEec-CCeEEEEEccCCCCC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISYN-DELVYLFEKNMGLGP 249 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~ 249 (439)
+|.+++.+|.|.+||+.... ........|..+...++|+|.+..| ++.+ |..|.+||....
T Consensus 179 lL~~asd~G~VtlwDv~g~s--------------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--- 241 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMS--------------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--- 241 (673)
T ss_pred eeEeeccCCeEEEEeccCCC--------------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc---
Confidence 89999999999999998765 2233447889999999999988544 4445 999999999764
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC-ceeEeecccccceEEEeecCC
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~ 328 (439)
.....+.... +...++ |+++|.+|++|+..|.|..||++.. .++..+..|...|++++|-|.
T Consensus 242 -------------~s~~~l~y~~---Plstva-f~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 242 -------------ASTDRLTYSH---PLSTVA-FSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred -------------cccceeeecC---Ccceee-ecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 2233333222 377888 8999999999999999999999854 578889999999999999765
Q ss_pred C
Q 013644 329 I 329 (439)
Q Consensus 329 ~ 329 (439)
-
T Consensus 305 ~ 305 (673)
T KOG4378|consen 305 P 305 (673)
T ss_pred c
Confidence 3
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.7e-23 Score=172.30 Aligned_cols=219 Identities=19% Similarity=0.231 Sum_probs=179.5
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
-.|++......|+++|+..+.|+|||++ .+.+++.+++|+..|+++.|.. .+.+||+++..|.|.|..+.++.....
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEEecccCccccc
Confidence 3455555556899999999999999998 4566777899999999999998 899999999999999999987765433
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
+.. +....|.-+.|+|..+++|.+++.+|.|.+||+....+...+.. .|..+...++|+|.++.+|++.
T Consensus 159 f~~-~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~----------~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 159 FTI-DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE----------AHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred eec-CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh----------hccCCcCcceecCCccceEEEe
Confidence 222 22456779999999999999999999999999988776554432 2788899999999999999999
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCC
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 255 (439)
+.|..|.+||.+....... -....+...++|.++|.+|+.|+ .|.|..||++...
T Consensus 228 G~Dkki~~yD~~s~~s~~~----------------l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-------- 283 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDR----------------LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-------- 283 (673)
T ss_pred cccceEEEeecccccccce----------------eeecCCcceeeecCCceEEEeecCCceEEEEecccCC--------
Confidence 9999999999997553221 12356788999999999999996 9999999998753
Q ss_pred cccccccccceeEeCCCCcceeeeEEe
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNF 282 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~ 282 (439)
.++.++..|... |++++|
T Consensus 284 -------~Pv~v~sah~~s--Vt~vaf 301 (673)
T KOG4378|consen 284 -------APVAVRSAHDAS--VTRVAF 301 (673)
T ss_pred -------CCceEeeecccc--eeEEEe
Confidence 566778888876 999984
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=5.4e-24 Score=187.90 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=218.8
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
+.++-++.|.||..+|+|+.|...|.++++|+.|..++||..++..++.. ..+|.+.|+.++.+. +..++++++.|.
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs-~rGhs~ditdlavs~--~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS-CRGHSGDITDLAVSS--NNTMIAAASNDK 254 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc-CCCCccccchhccch--hhhhhhhcccCc
Confidence 45666788999999999999999999999999999999999999887766 489999999999998 888999999999
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.|++|.+..+..+. .+.+|++.|++++|+|-. +.+.||++++||.+-...+..-....+. ...-+.
T Consensus 255 vIrvWrl~~~~pvs--vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~-------~~~~~~ 320 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVS--VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFT-------EKDLVD 320 (1113)
T ss_pred eEEEEecCCCchHH--HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcc-------ccccee
Confidence 99999998887764 489999999999999953 7789999999999821111110001111 233456
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEe-cCCeEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVY 239 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~ 239 (439)
++.|...+ .-+++|+.|+.-..|.+.... .+...+.-+..+.+- .+.+++ .+-.++
T Consensus 321 s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~---------------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 321 SILFENNG-DRFLTGSRDGEARNHEFEQLA---------------------WRSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred eeeccccc-cccccccCCcccccchhhHhh---------------------hhccceEEEeccccccccceeeeeeeEee
Confidence 66666655 789999999988888766422 112222222222222 334444 478899
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
+|++.++ .....+.+|... +..+. ++| +.+...+++.||...|||+-.|.+++...-...
T Consensus 379 vwnl~~g----------------~l~H~l~ghsd~--~yvLd-~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 379 VWNLYTG----------------QLLHNLMGHSDE--VYVLD-VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred eeecccc----------------hhhhhhcccccc--eeeee-ecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 9999887 567788888877 44455 455 446667889999999999998877765443345
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
.+..-+||++|+.++....-|.+.|.....+
T Consensus 440 kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred eeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 6777899999999988888899999876443
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-21 Score=171.43 Aligned_cols=354 Identities=14% Similarity=0.178 Sum_probs=238.2
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCC---CcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD---RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
.|...++|.++||.++++|+|..||.|.+|.--. .....+.+.-|...|.+++|++ +|.+|++|+..|.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS--DGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec--CCceEeecccceEEEEEee
Confidence 4677799999999999999999999999997433 2344566788999999999999 9999999999999999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
.+++. +.++.-.++|..+.++||+. +.+....|..|.+....+......+................-.+.++++|.
T Consensus 281 ~T~~k---qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 281 ETGKK---QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred cCCCc---ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 98874 34666779999999999998 466777899999998877666555554433322212223445678889994
Q ss_pred CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc---cCCCccEEEEEEccCCCEEEEec---------C-
Q 013644 169 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI---GKNNIHITGLAYSNTSELLISYN---------D- 235 (439)
Q Consensus 169 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~---------d- 235 (439)
- +.++-.+..|.|.+||+.+.+.+..+.. +..... ..+...++.++.+-.|.++++.. |
T Consensus 357 ~-~~~vln~~~g~vQ~ydl~td~~i~~~~v-------~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 357 T-NSLVLNGHPGHVQFYDLYTDSTIYKLQV-------CDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred C-CceeecCCCceEEEEeccccceeeeEEE-------EeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 3 6788888899999999988765433211 000000 12345677888888899998852 2
Q ss_pred -CeEEEEEccCCCCCCCCCCCcccccccccce-eEeCCCCcceeeeEEeeCCCCc-eEEEeCCCCeEEEEecCCC-----
Q 013644 236 -ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGG----- 307 (439)
Q Consensus 236 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~----- 307 (439)
-.+++|-..... +...... ....|... +...++.++... .+++++.||.+++|-+...
T Consensus 429 e~~LKFW~~n~~~------------kt~~L~T~I~~PH~~~--~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k 494 (792)
T KOG1963|consen 429 EVSLKFWQYNPNS------------KTFILNTKINNPHGNA--FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK 494 (792)
T ss_pred eEEEEEEEEcCCc------------ceeEEEEEEecCCCce--eEEEEEecCcccceeEEeccCCeEEEEEEecccccCc
Confidence 257788766542 1111222 22345544 333333444444 8899999999999987432
Q ss_pred -----ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCC-CCCCCCCCchhhhhhhhcccc--CcceEEEeCC
Q 013644 308 -----KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDFPPLPDNAEKIMKANKQGR--EDHSRITLTP 379 (439)
Q Consensus 308 -----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~ 379 (439)
.+...-.-|..+++.++|+.||..| +.+.|++|.+||..+ .++....+............. ..........
T Consensus 495 ~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (792)
T KOG1963|consen 495 KSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHAT 573 (792)
T ss_pred CccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeecc
Confidence 2222222377899999999999665 456789999999987 444333322222111111111 1112233334
Q ss_pred CcEEEEEEeccccee
Q 013644 380 DVIMHVLRLQRRQTL 394 (439)
Q Consensus 380 dg~v~~w~~~~~~~~ 394 (439)
.+.+.+|++-+....
T Consensus 574 ~~~l~~WNll~~~l~ 588 (792)
T KOG1963|consen 574 QQRLSVWNLLSMSLI 588 (792)
T ss_pred CceEehHhhhhhhee
Confidence 578899998777544
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.8e-23 Score=174.88 Aligned_cols=266 Identities=18% Similarity=0.287 Sum_probs=189.4
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-------ceeeeecCCcccEEEEEEeecCCCcEEEE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-------EKFSYLSGHLDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 76 (439)
..+..++..|.+.|++++|.|....|++++.||+|++|+++... .....+.+|.++|.|+++.+ ++..+++
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--n~~~~ys 361 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--NGEHCYS 361 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--CceEEEe
Confidence 44556889999999999999999999999999999999993211 12233579999999999999 9999999
Q ss_pred ecCCCcEEEEEcccCc--------eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC
Q 013644 77 SSADGQVRLGQIFEDG--------RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148 (439)
Q Consensus 77 ~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 148 (439)
|+.||+|+.|++.... ......+.||.+.|+.+++++...+ |++++.||+++.|+...... ..+....
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~-- 437 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPK-- 437 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCcc--
Confidence 9999999999775221 1223457799999999999998875 67999999999999877665 2221111
Q ss_pred CCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 013644 149 ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 228 (439)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (439)
..+.-.++.+-.....+.++ +.....+++...+.. ..
T Consensus 438 -------e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~-------------------------s~-------- 474 (577)
T KOG0642|consen 438 -------EHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVV-------------------------SD-------- 474 (577)
T ss_pred -------ccCCcceEeeccchhHhhhh---hcccccccchhhhhh-------------------------hh--------
Confidence 11222344443322122222 223333333332210 00
Q ss_pred EEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc
Q 013644 229 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308 (439)
Q Consensus 229 ~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 308 (439)
+.++... ...+......+..+. ..|.+.+.+++..|+.|+++|..+++
T Consensus 475 ---------~~~~~s~----------------------~~~~~~~~~~in~vV-s~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 475 ---------LLIFESS----------------------ASPGPRRYPQINKVV-SHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ---------eeecccc----------------------CCCcccccCccceEE-ecCCCCeeEecccCCceecccccccc
Confidence 0011000 000111111245555 68888999999999999999999999
Q ss_pred eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 309 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
++.....|...++++++.|+|.+|++++.|+.+++|.+....
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 999999999999999999999999999999999999986543
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=9.7e-20 Score=166.68 Aligned_cols=335 Identities=21% Similarity=0.365 Sum_probs=240.3
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCc-ccEEEEEE-eecCCCc-EEEEecC-CCcE
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHL-DNIFQTRI-MPFTDDR-KIITSSA-DGQV 83 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~-~~v~~~~~-~~~~~~~-~l~s~~~-dg~i 83 (439)
.+.+|...|.++.+.+.+..++.++.|+.+.+|+..... ....+ ..+. ..+..+.+ .+ ++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSP--DGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECC--CcceEEeccCCCCccE
Confidence 467899999999999999999999999999999998876 34333 3433 36777777 65 777 5555444 9999
Q ss_pred EEEEccc-CceeeeEEecCCCCceEEEEEccCCCcEEEEeCC-CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 84 RLGQIFE-DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE-DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 84 ~iw~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.+|++.. .... ..+..|...|..++|+|++. .+++++. |+.+++|++..+.....+.. |...+.
T Consensus 137 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~ 202 (466)
T COG2319 137 KLWDLSTPGKLI--RTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAG-----------HTDPVS 202 (466)
T ss_pred EEEEecCCCeEE--EEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeecc-----------CCCceE
Confidence 9999976 3333 55778999999999999998 5667775 99999999998666666554 567799
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 240 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i 240 (439)
+++|+|++..++++++.|+.+++||...+.... .....|.... ...|+|++.++++++ ++.+++
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR--------------STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRL 267 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEe--------------eecCCCCcce-eEeECCCCCEEEEecCCCcEEE
Confidence 999999874355555899999999877544221 0224444443 338999997777665 999999
Q ss_pred EEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec--cccc
Q 013644 241 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRH 318 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~ 318 (439)
|+...... ....+.+|.. .+.++. +.|++..+++++.|+.+.+|+..+........ .|..
T Consensus 268 ~~~~~~~~---------------~~~~~~~~~~--~v~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (466)
T COG2319 268 WDLRSSSS---------------LLRTLSGHSS--SVLSVA-FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329 (466)
T ss_pred eeecCCCc---------------EEEEEecCCc--cEEEEE-ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC
Confidence 99986521 1223344533 488887 78888888889889899999998887776665 7877
Q ss_pred ceEEEeecCCCcEEEEE-ecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEE-eCCCcEEEEEEecccceee
Q 013644 319 VVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~v~~w~~~~~~~~~ 395 (439)
.+..+.|.+++..++.+ ..|+.+.+|+...............+....... . ...+. ...++.+.+|+........
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred ceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeee
Confidence 89999994332455555 688999999987765211111111123333223 3 34444 6888999999998887664
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=6.6e-21 Score=148.25 Aligned_cols=282 Identities=18% Similarity=0.192 Sum_probs=200.5
Q ss_pred CCCEEEEec----CCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCcEEEEecCC-------CcEEEEEcccC
Q 013644 25 TGDFLVSGS----DDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD-------GQVRLGQIFED 91 (439)
Q Consensus 25 ~~~~l~t~~----~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iw~~~~~ 91 (439)
+.-.|++|. .|+.|.+-+++.+. .....+..|.+.|+.++-+|+ +...|+++-.+ ..+.||.+...
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccc
Confidence 444566664 46788887776543 344556688899999999995 66666665442 24679998654
Q ss_pred cee-------eeEEec-CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce-eeEEeeccCCCCCCCCceeeeEE
Q 013644 92 GRM-------DTKRLG-KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 92 ~~~-------~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
... ....+. .+-+.|.|+.|.|++.. +++- .|..|.+|++..+..+ ..+......+ +....++
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~vaev~ss~s~e------~~~~fts 175 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVAEVLSSESAE------MRHSFTS 175 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchheeeccccccc------ccceecc
Confidence 321 011122 35568999999999885 4343 4889999999987763 3332211111 4556788
Q ss_pred EeecC-CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEec-CCeEE
Q 013644 163 IVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DELVY 239 (439)
Q Consensus 163 ~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-d~~i~ 239 (439)
-+|+| .+++.+++. .|+++..||+++.+. ...+..+|...+..+.|+|+.+ +|++++ |+.|+
T Consensus 176 g~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--------------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvr 240 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--------------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVR 240 (370)
T ss_pred cccCCCCccceEEEe-CCCcEEEEEccchhh--------------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEE
Confidence 89999 344666554 578999999998763 3334478889999999999975 566665 99999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC------------
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------------ 307 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------------ 307 (439)
+||.+... .+++.+.+|... +.++.|-....++|++|+.|..|.+|...+-
T Consensus 241 iWD~R~tk---------------~pv~el~~HsHW--vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de 303 (370)
T KOG1007|consen 241 IWDTRKTK---------------FPVQELPGHSHW--VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE 303 (370)
T ss_pred EEeccCCC---------------ccccccCCCceE--EEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence 99998753 466778888876 9999954446688999999999999975431
Q ss_pred -----------------ceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccC
Q 013644 308 -----------------KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPM 347 (439)
Q Consensus 308 -----------------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~ 347 (439)
..+.++..|...|.+++||.-.+ .+|+-+.||.+.|=.+.
T Consensus 304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345667899999999998777 57888999999886654
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2.9e-21 Score=150.20 Aligned_cols=267 Identities=17% Similarity=0.213 Sum_probs=191.4
Q ss_pred eeeeccccceEEEEECC-CCCEEEEecCC-------CeEEEEeCCCCcc---------eeeeecCCcccEEEEEEeecCC
Q 013644 8 GKLHGHKGCVNAVEFNS-TGDFLVSGSDD-------KLVIFWDWKDRRE---------KFSYLSGHLDNIFQTRIMPFTD 70 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~-~~~~l~t~~~d-------g~i~iw~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~ 70 (439)
+.|..|.+.|..++-+| +.++|+|+-.+ ..+.||.+..... +...-..+-+.|.|+.|.| +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--n 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--N 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC--C
Confidence 35667889999999999 55667775432 2578999865422 2222224556899999999 9
Q ss_pred CcEEEEecCCCcEEEEEcccCceeee----EEecCCCCceEEEEEcc--CCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 71 DRKIITSSADGQVRLGQIFEDGRMDT----KRLGKHQGRVYKLAVEP--GSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 71 ~~~l~s~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
+..+++-. |..|.+|++.++..+.. ..-..+....++-+|+| ++. .+ ....|+++..||+++.+....+..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv-~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QV-ATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eE-EEeCCCcEEEEEccchhhhcchhh
Confidence 99998876 78999999987765211 11123567788899999 444 34 556789999999998877665543
Q ss_pred eccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc
Q 013644 145 SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS 224 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 224 (439)
. |...+..+.|+|....+|++++.||.|++||.+.-+ .+...+.+|...+.++.|+
T Consensus 212 A----------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------------~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 212 A----------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------------FPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred h----------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------ccccccCCCceEEEEEEec
Confidence 2 677799999999988899999999999999999755 4445558999999999999
Q ss_pred cCC-CEEEEe-cCCeEEEEEccCCCCCCCCCCC-------ccc------ccccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 225 NTS-ELLISY-NDELVYLFEKNMGLGPSPLSLS-------PED------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 225 ~~~-~~l~~~-~d~~i~i~d~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
|.. +++.++ +|..|.+|....-.....+... ..+ .-....+.++..|... |.+++|-+.+.-.
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS--VY~~aWSsadPWi 345 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS--VYALAWSSADPWI 345 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc--eEEEeeccCCCee
Confidence 975 455555 4999999987654321111110 000 1111234567777765 9999966667778
Q ss_pred EEEeCCCCeEEEEecC
Q 013644 290 VMSGSDCGHLFIWKKK 305 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~ 305 (439)
+|+-+.||++.|=.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 8899999999886654
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.89 E-value=2.9e-21 Score=153.05 Aligned_cols=324 Identities=14% Similarity=0.183 Sum_probs=212.6
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEe-cCCCcEEEEEcccCceeeeE
Q 013644 19 AVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITS-SADGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~ 97 (439)
-..|||+|+++|+++.- .+.|-|..+.+....+ ..-..|.-+.|.. +..+++++ ..++.|.+|++...+.. .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~--c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWY--C 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeE--E
Confidence 36899999999999875 7888888776543322 2245677888987 77776655 55889999999877765 3
Q ss_pred EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 98 RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 98 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
.+......+.+++|+|+|+++|.+...+-+|.+|.+.+.+....-. -+..+..++|+|++ ++.+..+
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------pK~~~kg~~f~~dg-~f~ai~s 152 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------PKTNVKGYAFHPDG-QFCAILS 152 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc------------cccCceeEEECCCC-ceeeeee
Confidence 4667778999999999999999999999999999999876544322 13346889999987 6777665
Q ss_pred cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec---CCeEEEEEccCCCCCCCCCC
Q 013644 178 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~ 254 (439)
.-.....+.+...+ ...............+.+.|+|||..|++-. +-.|+.|.-..|
T Consensus 153 RrDCkdyv~i~~c~------------~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG-------- 212 (447)
T KOG4497|consen 153 RRDCKDYVQISSCK------------AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG-------- 212 (447)
T ss_pred cccHHHHHHHHhhH------------HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc--------
Confidence 43111111111100 0011111133345578899999999888653 344444443322
Q ss_pred CcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE-----------------------
Q 013644 255 SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----------------------- 311 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------- 311 (439)
+..+. |+|.+++|+.|+.|+.+|+.+--+.+...
T Consensus 213 ----------------------~k~v~-wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 213 ----------------------LKFVE-WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred ----------------------eeEEE-eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence 67777 89999999999999999886533211100
Q ss_pred -------------------------------------eec------ccccceEEEeecCCCcEEEEEecC--CeEEEecc
Q 013644 312 -------------------------------------LMV------GDRHVVNQLEPHPHIPMFATCGIE--KTVKLWAP 346 (439)
Q Consensus 312 -------------------------------------~~~------~h~~~v~~~~~s~~~~~l~s~~~d--g~i~iw~~ 346 (439)
.++ ...-.+.-++|++|..+++|-.+. ..+-+||+
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl 349 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDL 349 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEec
Confidence 001 112246779999999999886543 58999999
Q ss_pred CCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceeeeeccccccccc
Q 013644 347 MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADF 406 (439)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~~~~~~~~~~~~ 406 (439)
...++...-....++....|.+..++ ++.+.....+.+|............+.+...++
T Consensus 350 q~l~l~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V~vP~~GF~i~~l 408 (447)
T KOG4497|consen 350 QNLKLHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKL 408 (447)
T ss_pred hhhhhhhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEEecCCCCceeeeE
Confidence 98887555445556655554443444 444444467889987654444333333333333
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=6.9e-20 Score=162.91 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=202.3
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee----eEEecCCCCceEEEEE
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD----TKRLGKHQGRVYKLAV 111 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~v~~i~~ 111 (439)
+.+.||++.........+ .-...|+++.|+|+ +..+++.|+.+|+|.+||++.+.... ......|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 479999998874444433 45678999999996 78889999999999999998766521 1224568899999999
Q ss_pred ccCCCc-EEEEeCCCCcEEEEEccCCCceeeEEeeccCC-CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 112 EPGSPY-IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE-NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 112 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
..+-.. -+++++.||.|..|+++.-............. ..........++++.|.+..++.|++|+..|.|.--.-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 764322 26688899999999887654422221111111 0111123556899999999999999999999987733332
Q ss_pred CcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeE
Q 013644 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 268 (439)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
.+. .+...+........|.++|+++.++|-+ +++.+++|.+++||...... .++..+
T Consensus 380 ~~~-------~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---------------~Pl~~~ 437 (555)
T KOG1587|consen 380 YTP-------APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---------------SPLLSL 437 (555)
T ss_pred Ccc-------cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC---------------Ccchhh
Confidence 221 0001122233446789999999999987 45556669999999876221 233344
Q ss_pred eCCCCcceeeeEEeeCCCC-ceEEEeCCCCeEEEEecCCC--ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 269 SGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 269 ~~~~~~~~v~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
..+.. .+++++ |||.. ..++++..+|.|.+||+... .++....-+....+.+.|++.|+.|+.|...|++.+|+
T Consensus 438 ~~~~~--~v~~va-WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 438 DSSPD--YVTDVA-WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhccc--eeeeeE-EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 44443 389999 78865 57788888999999997644 34444444556778889999999999999999999999
Q ss_pred cCCC
Q 013644 346 PMPT 349 (439)
Q Consensus 346 ~~~~ 349 (439)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 9643
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=2.9e-19 Score=155.87 Aligned_cols=284 Identities=10% Similarity=0.120 Sum_probs=177.3
Q ss_pred EEEecCCCeEEEEeCCCCcc--eeeeecCCcccEEEEEEeecCCCcEEEEec-CCCcEEEEEcccCcee-eeEEecCCCC
Q 013644 29 LVSGSDDKLVIFWDWKDRRE--KFSYLSGHLDNIFQTRIMPFTDDRKIITSS-ADGQVRLGQIFEDGRM-DTKRLGKHQG 104 (439)
Q Consensus 29 l~t~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~-~~~~~~~~~~ 104 (439)
.++...++.|.+|++.+... ....+ .+.+....++++| ++++|++++ .++.|.+|++.....+ ...... ...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 34446789999999964322 22222 3345677899999 999887664 5789999999633222 122221 234
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 183 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 183 (439)
....++++|+++.++++...++.|.+|++.+.. ......... +.....+++++|++..++++...++.|.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE---------GLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc---------CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 567899999999766666668999999997432 211111100 1123566889998855556666779999
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
+||+.+...+..... .... .........+.|+|+|+++++.+ ++.|.+|++......
T Consensus 152 v~d~~~~g~l~~~~~-------~~~~--~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~------------ 210 (330)
T PRK11028 152 LFTLSDDGHLVAQEP-------AEVT--TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE------------ 210 (330)
T ss_pred EEEECCCCcccccCC-------Ccee--cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC------------
Confidence 999976321110000 0000 01123456789999999887774 899999999742110
Q ss_pred cccceeEeCCC----CcceeeeEEeeCCCCceEEEeCC-CCeEEEEecCCCceeEeecccc---cceEEEeecCCCcEEE
Q 013644 262 REEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDR---HVVNQLEPHPHIPMFA 333 (439)
Q Consensus 262 ~~~~~~~~~~~----~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~ 333 (439)
.+..+.+.... .......+. ++|++++++++.. ++.|.+|++........+.++. .....+.++|+|++|+
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~-~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIH-ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI 289 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEE-ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence 01112221110 111233566 7999999988854 6899999986543222222221 2456789999999988
Q ss_pred EEec-CCeEEEeccC
Q 013644 334 TCGI-EKTVKLWAPM 347 (439)
Q Consensus 334 s~~~-dg~i~iw~~~ 347 (439)
++.. +++|.+|+++
T Consensus 290 va~~~~~~v~v~~~~ 304 (330)
T PRK11028 290 AAGQKSHHISVYEID 304 (330)
T ss_pred EEEccCCcEEEEEEc
Confidence 7765 8999999875
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=1.2e-18 Score=159.36 Aligned_cols=333 Identities=23% Similarity=0.374 Sum_probs=233.2
Q ss_pred eeeeeeccc-cceEEEEE-CCCCC-EEEEecC-CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-C
Q 013644 6 LCGKLHGHK-GCVNAVEF-NSTGD-FLVSGSD-DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-D 80 (439)
Q Consensus 6 ~~~~l~~h~-~~I~~~~~-s~~~~-~l~t~~~-dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d 80 (439)
....+.++. ..+..+.+ ++++. +++..+. |+.+.+|+..........+..|...|..++|+| ++..+++++. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~ 177 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLD 177 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCC
Confidence 345555544 37777777 88887 5555444 899999999873334444679999999999999 8888888885 9
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceee-EEeeccCCCCCCCCceee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRL-FYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (439)
+.+++|++...... ..+.+|...|.+++|+|++..++++++.|+.|++||...+..... +.. |...
T Consensus 178 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~-----------~~~~ 244 (466)
T COG2319 178 GTIKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG-----------HSDS 244 (466)
T ss_pred CceEEEEcCCCceE--EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC-----------CCcc
Confidence 99999999875544 446679999999999999874555669999999998886655542 222 2333
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeE
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 238 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i 238 (439)
. ...|+|++ ..+++++.++.+++|+++.... ..... ..|...+.++.|.|++..+++++ ++.+
T Consensus 245 ~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~ 308 (466)
T COG2319 245 V-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS-------------LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTV 308 (466)
T ss_pred e-eEeECCCC-CEEEEecCCCcEEEeeecCCCc-------------EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcE
Confidence 2 22899987 7888999999999999987542 01111 45688899999999887777765 8889
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEe--CCCCcceeeeEEeeCCCCceEEEe-CCCCeEEEEecCCCceeEeecc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.+|+.... ....... .|.. .+..+.+ .+++..++.+ ..|+.+.+|+............
T Consensus 309 ~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 369 (466)
T COG2319 309 RLWDLETG----------------KLLSSLTLKGHEG--PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369 (466)
T ss_pred EEEEcCCC----------------ceEEEeeecccCC--ceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecC
Confidence 99988765 2222332 4444 4888885 5553555555 6789999999887773333332
Q ss_pred cccceEEEeecCCCcEEEE-EecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 316 DRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
. ..+..+.+++ ...++. +..++.+.+|+............................+++.+.++.+.+|+...
T Consensus 370 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 370 H-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred C-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2 2288899988 544444 68899999999987665322211101122222344555666778889999999888
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.8e-20 Score=168.82 Aligned_cols=297 Identities=18% Similarity=0.225 Sum_probs=209.4
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeec--CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLS--GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
.+-..+.|+|-...++++...-.|+|||.+.++.+..+-. .....|+.+.+....|..++++|+.||.|+||+-....
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 4566788999888899988778999999998876554322 23457899998865567789999999999999754332
Q ss_pred --eee-eEE---ecC----CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 93 --RMD-TKR---LGK----HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 93 --~~~-~~~---~~~----~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
... ... +.+ ..+.=.-+.|.....+++ ++|.-..|+|||.........+... ....+++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~diP~~----------s~t~vTa 1213 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVADIPYG----------SSTLVTA 1213 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEeecccC----------CCcccee
Confidence 111 111 111 111124466777776555 5566789999999987776665433 2345777
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc--EEEEEEccCCC-EEEEec-CCeE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH--ITGLAYSNTSE-LLISYN-DELV 238 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~-d~~i 238 (439)
+.-+..+++++++|..||.|++||.+..... +.......|... |..+.+.+.|- -|++++ +|.|
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCcc------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7766666799999999999999999864311 223333556665 99999998773 366665 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcc-eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD- 316 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h- 316 (439)
++||++.... ........|...+ ..+++. .++....+|+|+. +.|+||++. |+.+..++.+
T Consensus 1282 ~~~DlR~~~~--------------e~~~~iv~~~~yGs~lTal~-VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1282 QLLDLRMSSK--------------ETFLTIVAHWEYGSALTALT-VHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNP 1344 (1387)
T ss_pred EEEecccCcc--------------cccceeeeccccCccceeee-eccCCCeeeecCc-ceEEEEecC-hhhhcccccCc
Confidence 9999987411 1122223333222 378888 8999999999999 999999987 5544444322
Q ss_pred ------ccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 317 ------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 317 ------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+.+.|++|||..-+||+|+.|.+|.||.......
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 24689999999999999999999999999866543
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=4.9e-20 Score=143.57 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=203.6
Q ss_pred eeeeeccccceEEEEECC--C-CCEEEEecC----CCeEEEEeCC--CCcceeeeecCCcccEEEEEEeecCCC---cEE
Q 013644 7 CGKLHGHKGCVNAVEFNS--T-GDFLVSGSD----DKLVIFWDWK--DRREKFSYLSGHLDNIFQTRIMPFTDD---RKI 74 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~--~-~~~l~t~~~----dg~i~iw~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l 74 (439)
+..+..+ -+++++.|+. + +.+||.|+- .+.|.|-.+. +++.+..-...|.-+++.+.|.|...| ++|
T Consensus 38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 4444443 4688999984 2 456888863 3566666554 333333322478899999999993211 355
Q ss_pred EEecCCCcEEEEEcccCc--eeee-----EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc---eeeEEe
Q 013644 75 ITSSADGQVRLGQIFEDG--RMDT-----KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA---TRLFYC 144 (439)
Q Consensus 75 ~s~~~dg~i~iw~~~~~~--~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~ 144 (439)
|+.+ ..+++|.+...+ .... ..-..+..++++..|+.-.++++.+++-|-+..|||++++.. ...+..
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 5543 489999987422 1111 112346679999999998888999999999999999999733 122222
Q ss_pred eccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc
Q 013644 145 SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS 224 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 224 (439)
|...|..++|...+..+||+.+.||.+|+||++..+....+ ........+...++|+
T Consensus 195 -----------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII------------YE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 195 -----------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII------------YEDPSPSTPLLRLSWN 251 (364)
T ss_pred -----------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE------------ecCCCCCCcceeeccC
Confidence 78889999999988889999999999999999986532111 0001225567889998
Q ss_pred cCC-CEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 225 NTS-ELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 225 ~~~-~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
+.. +++|+-. ...|.+.|++.+. ..+..+.+|... |++++|.......|++++.|.++.+
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~---------------tpva~L~~H~a~--VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPC---------------TPVARLRNHQAS--VNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCC---------------cceehhhcCccc--ccceEecCCCCceeeecCCcceEEE
Confidence 765 6777663 6789999998764 466788899887 9999954446679999999999999
Q ss_pred EecCCCce------eEeecccccceEEEeecCC-CcEEEEEecCCeEEE
Q 013644 302 WKKKGGKL------VRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKL 343 (439)
Q Consensus 302 wd~~~~~~------~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~i 343 (439)
||+.+.-. +..+. ..+.|+.+.|++. ..+++.+. ++.+.+
T Consensus 315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99875422 22222 4568999999964 44777665 344444
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.6e-20 Score=146.92 Aligned_cols=279 Identities=17% Similarity=0.216 Sum_probs=194.2
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC-CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG-SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
..+|++...|+|++||..+++.+ ..+.++...++.+.|..+ +.+.+.+|+.||+|++||++.......+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC--
Confidence 56888888999999999987776 458889999999999774 6678899999999999999987766555433221
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeec----CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 226 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 226 (439)
..+..+++.+-.+ +++++|+. +-.|.+||+|..+. ........|...|+++.|.|.
T Consensus 117 ------~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq-------------~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 117 ------GTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQ-------------LLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred ------CCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccc-------------hhhhhhhhccCcceeEEecCC
Confidence 2346777776544 68888763 56799999998662 244556789999999999997
Q ss_pred C-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 227 S-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 227 ~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
. .+|++|+ ||.+.+||+..... ......++ .+. ..|.++.|.++.-+.|.+-+......+|++
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~E------------eDaL~~vi-N~~--sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNE------------EDALLHVI-NHG--SSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcc------------hhhHHHhh-ccc--ceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 6 7888887 99999999976510 00111222 222 348899966665567888889999999999
Q ss_pred CCCceeEeecccc------------cceEEEeecCCCcEEEEEec-CCeEEEeccC---CC----CCCCCCCchhhhhhh
Q 013644 305 KGGKLVRLMVGDR------------HVVNQLEPHPHIPMFATCGI-EKTVKLWAPM---PT----DFPPLPDNAEKIMKA 364 (439)
Q Consensus 305 ~~~~~~~~~~~h~------------~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~---~~----~~~~~~~~~~~~~~~ 364 (439)
+.+.+...+.... ..+...-...+...++.++. -+...++-+. ++ .+..+.++...+...
T Consensus 242 e~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 242 EDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred cCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence 9887554433210 11111111223445555554 4555555443 22 235566656666666
Q ss_pred hccccCcceEEEeCCCcEEEEEEec
Q 013644 365 NKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 365 ~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
..+...+..+.+++.||.+.+|..+
T Consensus 322 i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 322 ILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HhhhcccceeeccCCCceEEEEecC
Confidence 5566778899999999999999963
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=1.7e-20 Score=146.07 Aligned_cols=246 Identities=21% Similarity=0.258 Sum_probs=181.9
Q ss_pred ccccceEEEEECCCC-----CEEEEecCCCeEEEEeCCCCccee---ee-----ecCCcccEEEEEEeecCCCcEEEEec
Q 013644 12 GHKGCVNAVEFNSTG-----DFLVSGSDDKLVIFWDWKDRREKF---SY-----LSGHLDNIFQTRIMPFTDDRKIITSS 78 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~-----~~l~t~~~dg~i~iw~~~~~~~~~---~~-----~~~h~~~v~~~~~~~~~~~~~l~s~~ 78 (439)
.|.-+++.+.|.|+. ++|||.+ ..+|+|.+....... .. -..+..++++..|... +.++|.+.+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 478899999999975 4577765 379999987432111 11 1356678999999874 788999999
Q ss_pred CCCcEEEEEcccCce-eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 79 ADGQVRLGQIFEDGR-MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
-|-+..|||++++.. .....+-.|...|..++|...+..+|++.|.||.||++|++..+...++..... ..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--------~~ 242 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--------PS 242 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC--------CC
Confidence 999999999988622 123456789999999999998888999999999999999998877666654332 14
Q ss_pred eeeEEEeecCCCCcEEEEeecC-ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN- 234 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~- 234 (439)
.+...++|++++.+++|+-..| ..|.|.|++... .+...+.+|.+.|+.++|.|.. ..+++++
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------TPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------------cceehhhcCcccccceEecCCCCceeeecCC
Confidence 5688899999998999987655 479999999744 3444558999999999999976 5666665
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 295 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~ 295 (439)
|..+.+||+........ ..++..+. ....|..+.|-+..+.+++.+..
T Consensus 309 D~qaliWDl~q~~~~~~----------~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENG----------EDPILAYT---AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cceEEEEecccccccCC----------CCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence 88999999986532100 01222222 23358999954456678877764
No 183
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.88 E-value=1.3e-19 Score=143.24 Aligned_cols=227 Identities=12% Similarity=0.043 Sum_probs=170.3
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.+.--..+|+|.+|++|+..+|.+-....|.||...... .....+..|...|+.+.|+| ..+.|++++.|..-++|
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap--~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP--KSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC--CCCceeEccCCCCcccc
Confidence 344446899999999999999999999999999987665 34556789999999999999 99999999999999999
Q ss_pred Ec-ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 87 QI-FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 87 ~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
.. ..+...+...+..+....+++.|+|.++ .|++|+.-..|.+|-++....--.-+. ....+...|+++.|
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKh-------ikkPirStv~sldW 154 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKH-------IKKPIRSTVTSLDW 154 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhh-------hCCccccceeeeec
Confidence 98 5555555566777899999999999997 688999999999998776543211111 11114667999999
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc---cccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH---LIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+|.+ -++++|+.|+..++|..--...-.......--..+.... ......+.+..+.|+|+|..|+-.+ |..+.+-
T Consensus 155 hpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 HPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9976 899999999999999755333222211111111111111 1125578899999999998887664 9999999
Q ss_pred EccCC
Q 013644 242 EKNMG 246 (439)
Q Consensus 242 d~~~~ 246 (439)
|...+
T Consensus 234 da~~p 238 (361)
T KOG1523|consen 234 DAAGP 238 (361)
T ss_pred ecCCC
Confidence 98765
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-19 Score=159.63 Aligned_cols=305 Identities=14% Similarity=0.176 Sum_probs=199.9
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc--CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE--DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 133 (439)
|.-.+++.+++| ++++++++..||.|.+|.--. +.......+.-|...|++++|+++|.+ |++||..+.+.+|.+
T Consensus 204 Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 204 HTFNITCVALSP--NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY-LLSGGREGVLVLWQL 280 (792)
T ss_pred hcccceeEEecc--ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce-EeecccceEEEEEee
Confidence 344578899999 999999999999999997543 333344567789999999999999995 669999999999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
.+++ .+.++. -..+|..+.++|++ .+.+....|..|.+....+......+..-.+.. ......
T Consensus 281 ~T~~-kqfLPR-----------Lgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~----~~~k~~ 343 (792)
T KOG1963|consen 281 ETGK-KQFLPR-----------LGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT----PSTKTR 343 (792)
T ss_pred cCCC-cccccc-----------cCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCC----cccccc
Confidence 9988 333322 35679999999987 788888889999999887765444333222210 011123
Q ss_pred CCccEEEEEEccCC-CEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC-CCcceeeeEEeeCCCCceEE
Q 013644 214 NNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 214 ~~~~i~~~~~~~~~-~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~s~~~~~l~ 291 (439)
...-.+.+.++|.- ..+..+..+.|.+||+.+........+...... .+. .....+++++ .+..|.+++
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~--------~~~~n~~v~itav~-~~~~gs~ma 414 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS--------DGDVNIQVGITAVA-RSRFGSWMA 414 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeeccc--------CCcceeEEeeeeeh-hhccceEEE
Confidence 35567788999954 455555699999999987632211111110000 011 1112366666 677899999
Q ss_pred EeC--------CC--CeEEEEecCCCc----eeE-eecccccceEEEeec-CCCc-EEEEEecCCeEEEeccCCCCCCCC
Q 013644 292 SGS--------DC--GHLFIWKKKGGK----LVR-LMVGDRHVVNQLEPH-PHIP-MFATCGIEKTVKLWAPMPTDFPPL 354 (439)
Q Consensus 292 ~~~--------~d--g~i~iwd~~~~~----~~~-~~~~h~~~v~~~~~s-~~~~-~l~s~~~dg~i~iw~~~~~~~~~~ 354 (439)
|+- .| -.+++|-..... +.. ....|...+...++. +... ..++++.||.++||-+.+.+-..-
T Consensus 415 T~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k 494 (792)
T KOG1963|consen 415 TLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK 494 (792)
T ss_pred EeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc
Confidence 873 22 357889754432 222 234576655555543 3333 899999999999999854332111
Q ss_pred C-----------CchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 355 P-----------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 355 ~-----------~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
. -|..++...+ ++.++ .+++.+.|++|.+||..+.
T Consensus 495 ~~s~W~c~~i~sy~k~~i~a~~-fs~dG-slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 495 KSSNWTCKAIGSYHKTPITALC-FSQDG-SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CccceEEeeeeccccCcccchh-hcCCC-cEEEEecCCEEEEecCCCh
Confidence 1 1222222222 33333 7788888999999999883
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=5.9e-21 Score=154.79 Aligned_cols=230 Identities=18% Similarity=0.245 Sum_probs=172.3
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee-----eeEEecCCCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM-----DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
..+|+++|..++|+|+ ++..||+|+.|.+|.||.+..+... +...+.+|...|.-++|+|.-..+|++++.|.+
T Consensus 77 v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4699999999999997 8889999999999999999765432 245688999999999999998889999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
|.+||+.+++....+. |...|.++.|+.+| .+|++.+.|..|+|||.++++.+..-
T Consensus 156 v~iWnv~tgeali~l~------------hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----------- 211 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD------------HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----------- 211 (472)
T ss_pred EEEEeccCCceeeecC------------CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-----------
Confidence 9999999998776654 68889999999987 89999999999999999998754321
Q ss_pred cccccCCCccEEEEEEccCCCEEEEe----cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISY----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
.......-..+.|..++.++.+| ++.++-+||..+-..+ -....+....+ |. +-|+
T Consensus 212 ---~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-------------~~~~elDtSnG---vl-~PFy 271 (472)
T KOG0303|consen 212 ---VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-------------IALQELDTSNG---VL-LPFY 271 (472)
T ss_pred ---ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-------------ceeEEeccCCc---eE-Eeee
Confidence 01123334567788889977777 3789999998764211 11222222222 22 3458
Q ss_pred CCCCceEE-EeCCCCeEEEEecCCCce----eEeecccccceEEEeecCC
Q 013644 284 GPNDEYVM-SGSDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 284 s~~~~~l~-~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~ 328 (439)
.+|.+.++ +|-.|+.|+.|.+..-.+ +.+|+. ..+=..+.|-|.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQRG~g~mPK 320 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQRGMGFMPK 320 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-CCcccccccccc
Confidence 88888775 556699999999886553 223331 234455666664
No 186
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=5.3e-20 Score=145.53 Aligned_cols=264 Identities=13% Similarity=0.176 Sum_probs=184.2
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-------e-----eeEEecCCCCceEEEEEc-------cCCCcEE
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-------M-----DTKRLGKHQGRVYKLAVE-------PGSPYII 119 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-------~-----~~~~~~~~~~~v~~i~~~-------~~~~~~l 119 (439)
-...+.|+| ||..|++-+.|..+++|++...-. . ..... .....|...+|- |+.. ++
T Consensus 51 f~kgckWSP--DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~-l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSP--DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTN-LF 126 (406)
T ss_pred hhccceeCC--CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccc-ee
Confidence 355689999 999999999999999999853211 0 00011 123556677775 4554 78
Q ss_pred EEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeC-cCCcccCCCCC
Q 013644 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI-RKCHWYSPISS 198 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~ 198 (439)
++.+.+.-|++||.-+++....+....... .-....+++|+|+| ..|++|. ...|++||+ +.+.....+..
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~d------e~taAhsL~Fs~DG-eqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQD------EYTAAHSLQFSPDG-EQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHH------hhhhheeEEecCCC-CeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 899999999999999998876665432111 11235689999998 6666654 579999999 54442111100
Q ss_pred CCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcce
Q 013644 199 DTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 276 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (439)
.. .-..+..+-|.+++|+|.. +.++.++ ..++-||.-... .+...+-+|.+.
T Consensus 199 -------~~-~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----------------~pl~llggh~gG-- 252 (406)
T KOG2919|consen 199 -------VT-KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----------------RPLQLLGGHGGG-- 252 (406)
T ss_pred -------hh-cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----------------CceeeecccCCC--
Confidence 00 0012346678899999976 5888887 667777766555 577888889887
Q ss_pred eeeEEeeCCCCceEEEeCC-CCeEEEEecCC-CceeEeeccccc-ceE--EEeecCCCcEEEEEecCCeEEEeccCC-CC
Q 013644 277 VKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG-GKLVRLMVGDRH-VVN--QLEPHPHIPMFATCGIEKTVKLWAPMP-TD 350 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~~~~h~~-~v~--~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~ 350 (439)
|+.++ |.++|+.|++|+. +-.|..||++. ..++..+..|.. .-. -....|++++|++|+.||.|++||++. +.
T Consensus 253 vThL~-~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 253 VTHLQ-WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred eeeEE-eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 99999 8999999999986 67899999875 456667776654 222 345578999999999999999999976 44
Q ss_pred -CCCCCCchhhh
Q 013644 351 -FPPLPDNAEKI 361 (439)
Q Consensus 351 -~~~~~~~~~~~ 361 (439)
...+..+...+
T Consensus 332 ~~sv~~~~sd~v 343 (406)
T KOG2919|consen 332 EVSVTGNYSDTV 343 (406)
T ss_pred cccccccccccc
Confidence 34444444444
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=137.79 Aligned_cols=284 Identities=17% Similarity=0.189 Sum_probs=196.4
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCC---------cceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDR---------REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
...|.+-+++|.+++|+.|..+|.|-+..+.+. +......++|.++|+.++|. ..+|++++. |.|+
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGGD-GLVY 84 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeeccC-ceEE
Confidence 345777889999999999999999999988532 22222347999999999997 456777654 9999
Q ss_pred EEEcccCcee------eeEEecCC-----CCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 85 LGQIFEDGRM------DTKRLGKH-----QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 85 iw~~~~~~~~------~~~~~~~~-----~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
-|..++.... .....+.| -..|+++...|..+.++ .++.|+.++-||+++++..+.+..
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~rG--------- 154 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYRG--------- 154 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEcC---------
Confidence 9987643320 00111122 24689999999887666 555899999999999999888876
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
|...+.+++-...+ ..+++|++||++|+||.++++..+.++....... ........|.+++. +..+|++|
T Consensus 155 --HtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~-----lRp~~g~wigala~--~edWlvCG 224 (325)
T KOG0649|consen 155 --HTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL-----LRPDWGKWIGALAV--NEDWLVCG 224 (325)
T ss_pred --CcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhh-----cCcccCceeEEEec--cCceEEec
Confidence 77789999885544 5899999999999999999987665543222111 11223445666655 45689999
Q ss_pred cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 234 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 234 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
....+.+|.++.. +....+.-.. .+..+.| ....+++++..+.+.-|.+. |.+....
T Consensus 225 gGp~lslwhLrss----------------e~t~vfpipa---~v~~v~F---~~d~vl~~G~g~~v~~~~l~-Gvl~a~i 281 (325)
T KOG0649|consen 225 GGPKLSLWHLRSS----------------ESTCVFPIPA---RVHLVDF---VDDCVLIGGEGNHVQSYTLN-GVLQANI 281 (325)
T ss_pred CCCceeEEeccCC----------------CceEEEeccc---ceeEeee---ecceEEEeccccceeeeeec-cEEEEec
Confidence 9999999999876 3444444322 2555554 45777888887889999876 5555555
Q ss_pred cccccceEEEeecCC-CcEEEEEecCCeEEEec
Q 013644 314 VGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWA 345 (439)
Q Consensus 314 ~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~ 345 (439)
.......++..|+.. -++|-.++....+.|+.
T Consensus 282 p~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 282 PVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cCCccceeeecccCCceEEEEecccceeeeeee
Confidence 443334444444322 34566667777776653
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1.5e-20 Score=152.39 Aligned_cols=209 Identities=16% Similarity=0.228 Sum_probs=159.1
Q ss_pred eeeccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCc------ceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 9 KLHGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRR------EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+. .....+.+|...|--++|+|. ..+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-APNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-chhhHhhccCCc
Confidence 4679999999999999 56789999999999999986543 234557899999999999994 677899999999
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
+|.+|++.+++.+.. +. |.+-|.++.|+.+|. ++++++.|..|++||.++++.+..-..+. ...-.
T Consensus 155 ~v~iWnv~tgeali~--l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~he----------G~k~~ 220 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT--LD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHE----------GAKPA 220 (472)
T ss_pred eEEEEeccCCceeee--cC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeeccccc----------CCCcc
Confidence 999999999887744 55 999999999999998 68899999999999999998776553322 11233
Q ss_pred EEeecCCCCcEEEEee---cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe--cCC
Q 013644 162 AIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE 236 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~ 236 (439)
.+.|-.++ .++-+|. .+..+-+||..+.+. |. ... . ......|.---|.++..++..+ +|+
T Consensus 221 Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~e--------P~---~~~-e-lDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 221 RAIFLASG-KIFTTGFSRMSERQIALWDPNNLEE--------PI---ALQ-E-LDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred eeEEeccC-ceeeeccccccccceeccCcccccC--------cc---eeE-E-eccCCceEEeeecCCCCEEEEEecCCc
Confidence 44555555 5555543 466899999876541 11 000 1 1234556666778888776655 499
Q ss_pred eEEEEEccCC
Q 013644 237 LVYLFEKNMG 246 (439)
Q Consensus 237 ~i~i~d~~~~ 246 (439)
.|+.|++...
T Consensus 287 ~IRYyEit~d 296 (472)
T KOG0303|consen 287 SIRYFEITNE 296 (472)
T ss_pred ceEEEEecCC
Confidence 9999999765
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=162.94 Aligned_cols=276 Identities=11% Similarity=0.092 Sum_probs=205.3
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
.|..++|-| ||..|+.+.. ..+.+||...+..+ ..+++|.+.|++++|+.+|+ .+++|+.|..|.+|.-+-...
T Consensus 14 ci~d~afkP--DGsqL~lAAg-~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKP--DGTQLILAAG-SRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECC--CCceEEEecC-CEEEEEeCCCcccc--cccccccceEEEEEEccCCc-eeccCCCceeEEEecccccce
Confidence 899999999 9999888755 47899999988877 55999999999999999998 689999999999998654333
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
.+.- |...|.|+.|+|-+ +.|++++-. ..-+|........+ ......+
T Consensus 88 LkYS-------------H~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-----------------~kss~R~ 135 (1081)
T KOG1538|consen 88 LKYS-------------HNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-----------------HKSSSRI 135 (1081)
T ss_pred eeec-------------cCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-----------------hhhheeE
Confidence 2221 78889999999976 788887753 56778766533110 2235678
Q ss_pred EEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-----ceEEE
Q 013644 219 TGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMS 292 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-----~~l~~ 292 (439)
.+.+|..||++|+.|. +|+|.+-+.... +....-.......+|.+++ |+|.. ..++.
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gE----------------ek~~I~Rpgg~Nspiwsi~-~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGE----------------EKVKIERPGGSNSPIWSIC-WNPSSGEGRNDILAV 198 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCC----------------cceEEeCCCCCCCCceEEE-ecCCCCCCccceEEE
Confidence 9999999999999996 999999865433 1222222222233599999 56643 46778
Q ss_pred eCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcc
Q 013644 293 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDH 372 (439)
Q Consensus 293 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (439)
.....++.+|.+. |+.+..-+.-.-...|+.+.++|.++..||.|+.+++|.-++-.+.++......+..+. ..+++.
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~-~~PNsQ 276 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQ-AKPNSQ 276 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEE-EccCCc
Confidence 8888888888776 55544323223345688999999999999999999999887766666655455555544 466777
Q ss_pred eEEEeCCCcEEEEEEeccc
Q 013644 373 SRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 373 ~~~~~s~dg~v~~w~~~~~ 391 (439)
..+.++.||++--+++--.
T Consensus 277 ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred eEEEEEccCeeehhhhHHh
Confidence 8899999999998887443
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.86 E-value=2.4e-19 Score=165.35 Aligned_cols=355 Identities=15% Similarity=0.151 Sum_probs=214.4
Q ss_pred cceeeeeeccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcc-------eeeeecCCcccEEEEEEeecCCCcEEE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRRE-------KFSYLSGHLDNIFQTRIMPFTDDRKII 75 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~ 75 (439)
..++..|..|+..|..++.++.. .+|+|||.||+|++|+...... ..+ +......+.++...+ .++.+|
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lt-ys~~~sr~~~vt~~~--~~~~~A 1114 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELT-YSPEGSRVEKVTMCG--NGDQFA 1114 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEE-EeccCCceEEEEecc--CCCeEE
Confidence 45788899999999999998754 9999999999999999864321 112 223567888999998 999999
Q ss_pred EecCCCcEEEEEcccCcee-----eeEEecC-CCCce-EEEEEccCCC-cEEEEeCCCCcEEEEEccCCCceeeEEeecc
Q 013644 76 TSSADGQVRLGQIFEDGRM-----DTKRLGK-HQGRV-YKLAVEPGSP-YIIYSCGEDGFVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 76 s~~~dg~i~iw~~~~~~~~-----~~~~~~~-~~~~v-~~i~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 147 (439)
.++.||.|++.++...... ....... ..+.+ ..-+|....+ ..++.+...+.|..||++.......+....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~- 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL- 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-
Confidence 9999999999998752111 0111111 12233 3334443333 377788889999999999876655543221
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT- 226 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 226 (439)
..+.|++++.+|.+ +++++|+..|.+.+||++-+..+.... ..+..+|+.+..+|-
T Consensus 1194 --------~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~--------------~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1194 --------RHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWE--------------HPARAPIRHVWLCPTY 1250 (1431)
T ss_pred --------cccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeeccc--------------CcccCCcceEEeeccC
Confidence 45679999999976 899999999999999999766433222 233456666666653
Q ss_pred --CCEEEEe---cCCeEEEEEccCCCCCCCCCCC-cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEE
Q 013644 227 --SELLISY---NDELVYLFEKNMGLGPSPLSLS-PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 300 (439)
Q Consensus 227 --~~~l~~~---~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~ 300 (439)
....+++ +.+.|.+|++.++......... ....-....+..-............. +...+.++.+|+.|..|+
T Consensus 1251 ~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~-~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG-VCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeee-cccCCceeeecCCcccee
Confidence 2344443 2678999999988544333222 11100000000000001111122222 344567889999999999
Q ss_pred EEecCCCcee-EeecccccceEEEeecCCCcEEEEEec--CC------------eEE-EeccCCCCCCCCCCchhhhhhh
Q 013644 301 IWKKKGGKLV-RLMVGDRHVVNQLEPHPHIPMFATCGI--EK------------TVK-LWAPMPTDFPPLPDNAEKIMKA 364 (439)
Q Consensus 301 iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg------------~i~-iw~~~~~~~~~~~~~~~~~~~~ 364 (439)
.||....+.. ....+..........+.+ ..++.++. |- ..+ .=.+..+....-..|...+...
T Consensus 1330 ~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1330 KWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 9998765443 222222222222222211 11222221 00 000 0001111111122467777777
Q ss_pred hccccCcceEEEeCCCcEEEEEE
Q 013644 365 NKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 365 ~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
.....+..++++.+.||.|++|.
T Consensus 1409 a~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCccEEEEecCCCeeeecC
Confidence 76666777999999999999994
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=4.9e-19 Score=157.56 Aligned_cols=258 Identities=16% Similarity=0.136 Sum_probs=180.8
Q ss_pred ccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCcce-----eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 14 KGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREK-----FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 14 ~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
...|+|+.|+| +..++|.|..+|.|.+||+..+... ......|..+++.+.|.....+.-+++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 57899999999 6688899999999999999876542 22235799999999998733345599999999999998
Q ss_pred cccCceee-eEE---ec------CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 88 IFEDGRMD-TKR---LG------KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 88 ~~~~~~~~-~~~---~~------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
++.-.... ... .. .....+++++|.+..++.++.|+.+|.|..=+......... ..+.+......|.
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~---~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE---VSYKGHSTFITHI 398 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc---ccccccccccccC
Confidence 76432210 000 00 12346899999999998999999999988744333222110 0111111223378
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-C
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-D 235 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d 235 (439)
+.|+++.++|-....|++++ |.+++||...... .+......+...+++++|||.. ..++++. +
T Consensus 399 g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~--------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA--------------SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred cceEeeecCCCccceeeeec-cceeEeccccCCC--------------CcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence 89999999999877777776 8999999977322 2223334556669999999986 5566665 9
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
|.+.+||+..... .+....... ..+....++++.|+.|++|...|.+.+|++..
T Consensus 464 G~l~iWDLl~~~~--------------~Pv~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDE--------------EPVLSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred Cceehhhhhcccc--------------CCccccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999976521 222222222 12444444899999999999999999999863
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2.8e-19 Score=145.64 Aligned_cols=270 Identities=16% Similarity=0.254 Sum_probs=184.9
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCC--------C-----C--cceeeeecCCcccEEEEEEee
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWK--------D-----R--REKFSYLSGHLDNIFQTRIMP 67 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~--------~-----~--~~~~~~~~~h~~~v~~~~~~~ 67 (439)
+.+.+..|..|...|+++.|+|+|.+||+|+.+|.|.+|... + . ..+...+.+|...|+.++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 355677899999999999999999999999999999999865 2 1 124455778999999999999
Q ss_pred cCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeecc
Q 013644 68 FTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 68 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 147 (439)
++.++++++.|.++++||+..+... ..+..|...+..++|.|-+++ +++-+.|...+.+.+...+..........
T Consensus 134 --d~~~l~s~s~dns~~l~Dv~~G~l~--~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m 208 (434)
T KOG1009|consen 134 --DSNFLVSGSVDNSVRLWDVHAGQLL--AILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIM 208 (434)
T ss_pred --CCceeeeeeccceEEEEEeccceeE--eeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEe
Confidence 9999999999999999999988776 458899999999999999985 66888888777777766554443331111
Q ss_pred CCC--CCC------CCc----eeeeEEEeecCCCCcEEEEeec----Cce-----EEEEeCcCCcccCCCCCCCCccccc
Q 013644 148 SEN--SKQ------PMN----SIRLNAIVIDPRNPNYFAVGGS----DEY-----ARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 148 ~~~--~~~------~~~----~~~v~~~~~~~~~~~~l~~~~~----dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
... ... ..| ..-...++|+|+| .++++... .+. .++|+-...+ .|
T Consensus 209 ~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP----- 274 (434)
T KOG1009|consen 209 PAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RP----- 274 (434)
T ss_pred eecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeecccccc--------Cc-----
Confidence 000 000 001 1224567889987 67776542 122 2333322111 11
Q ss_pred ccccccCCCccEEEEEE------------------ccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeE
Q 013644 207 PRHLIGKNNIHITGLAY------------------SNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 268 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~------------------~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
...+.....+...+.+ .|-+-.++.+..+.+++||.++. .+....
T Consensus 275 -~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~----------------~P~~~v 337 (434)
T KOG1009|consen 275 -AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL----------------EPLAVV 337 (434)
T ss_pred -eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc----------------cceEEE
Confidence 1111112222223332 23445677788999999998765 233333
Q ss_pred eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCcee
Q 013644 269 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 310 (439)
Q Consensus 269 ~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 310 (439)
.... ...++.++ |+++|.+|+..+.||...+--++..++-
T Consensus 338 ~nih-y~~iTDia-ws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 338 DNIH-YSAITDIA-WSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eeee-eeeeccee-ecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 3222 23599999 8999999999999999888777765543
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.8e-19 Score=143.87 Aligned_cols=295 Identities=12% Similarity=0.147 Sum_probs=201.6
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG 126 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg 126 (439)
+.+|.+.|.++.|+. ++++|++|+.|..+++|++... +.+. ..-..|...|.|++|...+. .+++|+.++
T Consensus 52 ~~~H~GCiNAlqFS~--N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHTGCINALQFSH--NDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDLENR-FLYSGERWG 127 (609)
T ss_pred hhhhccccceeeecc--CCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEccCCe-eEecCCCcc
Confidence 458999999999999 9999999999999999998632 1211 11234668999999998776 688999999
Q ss_pred cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 127 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
+|..-|+++.+.+....... ..+.|+.+..+|.. +.|++.+.++.|.+||.+... .+...++
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~---------~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~--------~~~~~~~ 189 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENN---------NRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQ--------NPISLVL 189 (609)
T ss_pred eeEeeecccceeeeeecccC---------cccceeecccCCCC-ceEEEEecCceEEEEeccCCC--------CCCceee
Confidence 99999999988777665322 35579999999986 899999999999999998754 1222222
Q ss_pred ccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-cceeeeEEee
Q 013644 207 PRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFF 283 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 283 (439)
+ .........+.|+|.. .+|++.+ .+.+-+||.+....+.- ....+.+-.. .....++. |
T Consensus 190 ~----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~------------~~~~~~~L~~~~~~~M~~~-~ 252 (609)
T KOG4227|consen 190 P----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY------------QRSMFKGLPQENTEWMGSL-W 252 (609)
T ss_pred e----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH------------hhhccccCcccchhhhhee-e
Confidence 2 3345567888999976 5666665 88999999987532100 0001111111 11124455 8
Q ss_pred CCCCceEEEeCCCCeEEEEecCCCceeEeecccc-------cceEEEeecCCCcEEEEEecCCeEEEeccCCCC------
Q 013644 284 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD------ 350 (439)
Q Consensus 284 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------ 350 (439)
+|+|..+++--....-.+||+-+.++...-..|. ..+.+++|--|- -+++|+.+-.|.+|.+....
T Consensus 253 ~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 253 SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred CCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCcc
Confidence 9999988877665566778877655432222232 256778886554 48999999999999874211
Q ss_pred ------------------CCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 351 ------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 351 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
+..+.+|..-+..+. +.....++++.+-...+++|.-
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR-F~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR-FSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCcchhhCchhheecceeEEEeccccccccee-ecCCcceEeccchhhheecccc
Confidence 112234433333332 4455667777777888999963
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=5e-19 Score=158.90 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=162.4
Q ss_pred CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---CcEEEEEcccCceeeeEEecCCCCceEEEEE
Q 013644 35 DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAV 111 (439)
Q Consensus 35 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 111 (439)
+..|.+||...... . .+..|...+..++|+| +++.|+.++.+ ..|.+||+.+++......+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~~-~-~lt~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQ-F-IVNRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCc-e-EeccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 47899999876543 2 3457788899999999 99999887653 4699999987765433334433 346899
Q ss_pred ccCCCcEEEEeCCCCcEEEE--EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 112 EPGSPYIIYSCGEDGFVQHF--DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 112 ~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
+|+|+.++++...+|.+.+| |+.++.... +.. +...+....|+|++..+++++..++...+|++..
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~-----------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS-----------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc-----------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99999766666678876655 555554322 221 2334678999999855555666778888888754
Q ss_pred CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEe
Q 013644 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS 269 (439)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (439)
... . .... .+.. ....|+|+|+.++..+...+.+||+.++. . ..+.
T Consensus 324 ~~~-------------~-~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~----------------~-~~lt 369 (429)
T PRK01742 324 SGG-------------G-ASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGS----------------T-EVLS 369 (429)
T ss_pred CCC-------------C-eEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCC----------------e-EEec
Confidence 221 0 0011 1122 35689999999988775667779987762 1 1121
Q ss_pred CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec--CCCceeEeecccccceEEEeecCC
Q 013644 270 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK--KGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 270 ~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
.... ..... |+|+|++|+.++.++.+.+|.+ .+|+.+..+.+|.+.+...+|+|-
T Consensus 370 ~~~~---~~~~~-~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 370 STFL---DESPS-ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCC---CCCce-ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1111 23445 8999999999999998888875 357888888888888999999985
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=137.55 Aligned_cols=302 Identities=11% Similarity=0.117 Sum_probs=198.7
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEec-CCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
+.+|.+.++++.|-. +.+|++|..-|.|++|.+.+...... +. .+...|+.+.--|++. +.+-+.|+.+.+|
T Consensus 10 LRp~~~~v~s~~fqa---~~rL~sg~~~G~V~~w~lqt~r~~~~--~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQA---NERLMSGLSVGIVKMWVLQTERDLPL--IRLFGRLFITNLQSIPNDS--LDTQGRDPLLILW 82 (323)
T ss_pred eccccchheehhhcc---chhhhcccccceEEEEEeecCccchh--hhhhccceeeceeecCCcc--hhhcCCCceEEEE
Confidence 568999999999985 55699999999999999988777654 44 4778999999999864 5699999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc-eEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
++.-+..+.. |...++++.|.+. -+...+... .+-.|+-+............+.+...+...
T Consensus 83 ~ia~s~~i~i--------------~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 83 TIAYSAFISI--------------HSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred EccCcceEEE--------------eeeeccccccccc---eeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 9987654433 4455777777763 233333222 233333332222111122222222222222
Q ss_pred ccCCCccEEEEEEccC-C-C-EEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 211 IGKNNIHITGLAYSNT-S-E-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~-~-~-~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
.....+.+.+..+... + . +|++| .+|.+.+||+.++....... +..+.......|..+ +.++. +.+.
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~------~~~kv~~~~ash~qp--vlsld-yas~ 216 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP------QSSKVESPNASHKQP--VLSLD-YASS 216 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc------cccccccchhhccCc--ceeee-echh
Confidence 2344556777665432 3 3 33444 49999999998862211111 011222233345444 88888 5555
Q ss_pred CceEEEeCCCCeEEEEecCCC--c--eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhh
Q 013644 287 DEYVMSGSDCGHLFIWKKKGG--K--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI 361 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~--~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~ 361 (439)
-..=++|+.+-.+..|+++.. . ......-.+-.|..+..-||++.+||+|.|+.||||+..+..+ ..+..|...+
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv 296 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV 296 (323)
T ss_pred hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence 555567777778888887643 2 2222222345788899999999999999999999999988775 7777888777
Q ss_pred hhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 362 MKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
.... ++.+...++++|.|++|-+|++
T Consensus 297 n~vA-fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVA-FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEE-eCCCCchhhhccCCceEEeeec
Confidence 7766 5666778889999999999986
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.9e-16 Score=127.88 Aligned_cols=239 Identities=15% Similarity=0.244 Sum_probs=176.7
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC--cEEEEEcccC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG--QVRLGQIFED 91 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~ 91 (439)
...+..+.|+.+...|..|+.|| -++|+.......... ......|.-+-|+ ..++|..+.+. .+++.+.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeecc----cceeEEEecCCCceEEEEEcccC
Confidence 45677888999999999999988 688887765542222 1223345556665 46776666543 4889998776
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
..++...+ ..+|.++.++.+. ++ ++-.+ .|+|||+++.+.+..+..... +...+.++.+++.+ .
T Consensus 79 ~~ICe~~f---pt~IL~VrmNr~R--Lv-V~Lee-~IyIydI~~MklLhTI~t~~~--------n~~gl~AlS~n~~n-~ 142 (391)
T KOG2110|consen 79 TTICEIFF---PTSILAVRMNRKR--LV-VCLEE-SIYIYDIKDMKLLHTIETTPP--------NPKGLCALSPNNAN-C 142 (391)
T ss_pred ceEEEEec---CCceEEEEEccce--EE-EEEcc-cEEEEecccceeehhhhccCC--------CccceEeeccCCCC-c
Confidence 66655443 4789999998763 44 44443 499999999998877754311 34457777777765 5
Q ss_pred EEEEee--cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC-eEEEEEccCCC
Q 013644 172 YFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-LVYLFEKNMGL 247 (439)
Q Consensus 172 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~-~i~i~d~~~~~ 247 (439)
+++.-+ ..|.|.+||..+.+ +...+..|.+.+.+++|+++|.+||+++ .| .|++|.+..+
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~---------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G- 206 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQ---------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG- 206 (391)
T ss_pred eEEecCCCCCceEEEEEcccce---------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-
Confidence 666532 46899999998754 3344579999999999999999999998 33 6899999887
Q ss_pred CCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC
Q 013644 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
+....|+.......|.+++ |+|++++|++.+..++|++|.++.
T Consensus 207 ---------------~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 ---------------QKLYEFRRGTYPVSIYSLS-FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ---------------cEeeeeeCCceeeEEEEEE-ECCCCCeEEEecCCCeEEEEEecc
Confidence 5666676665577799999 899999999999999999998764
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=2.1e-17 Score=130.89 Aligned_cols=245 Identities=15% Similarity=0.117 Sum_probs=177.4
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc-eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc-
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG-RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL- 133 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~- 133 (439)
-..+|+|.+|++ +...+|.+.....|.||.....+ ......+..|...|+.++|+|..++ |++|+.|..-++|..
T Consensus 9 ~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecC--CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc-eeEccCCCCccccccC
Confidence 347899999999 99999999999999999988776 5566788999999999999999985 679999999999998
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
..++-...+.... +....+++.|+|.. +.|++|+.-..|.||-++..+. -....++...
T Consensus 86 ~~~~WkptlvLlR---------iNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENd-----------WWVsKhikkP 144 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR---------INRAATCVKWSPKE-NKFAVGSGARLISVCYYEQEND-----------WWVSKHIKKP 144 (361)
T ss_pred CCCeeccceeEEE---------eccceeeEeecCcC-ceEEeccCccEEEEEEEecccc-----------eehhhhhCCc
Confidence 4444333333222 56779999999976 8999999999999998876431 1122233355
Q ss_pred CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccc--cccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 214 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQK--REEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
+...|+++.|.|++-+|+.|+ |+.+++|..--........-.++.... ......+. .....+..+. |+|+|..|
T Consensus 145 irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~-fs~sG~~l 221 (361)
T KOG1523|consen 145 IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVL-FSPSGNRL 221 (361)
T ss_pred cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeE-eCCCCCEe
Confidence 678899999999999999997 999999976433222222222222111 11122222 3334589999 89999999
Q ss_pred EEeCCCCeEEEEecCCCc-eeEeecccccceEEEeecC
Q 013644 291 MSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHP 327 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~ 327 (439)
+-.+.|..+.+-|..... .+..+....-+..++.|-.
T Consensus 222 awv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred eEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence 999999999999876554 3333333335666666643
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-17 Score=127.26 Aligned_cols=267 Identities=13% Similarity=0.206 Sum_probs=177.9
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC--------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED--------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
..|.+-+++| .+++|++|..+|+|.+..+.+- .........+|.++|+.++|..+ +|++|+ ||.|+
T Consensus 11 ~tvf~qa~sp--~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 11 NTVFAQAISP--SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVY 84 (325)
T ss_pred HHHHHHhhCC--cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEE
Confidence 3466678899 9999999999999999988532 22333456789999999999843 455665 59999
Q ss_pred EEEccCCCcee-eEEeecc-CCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 130 HFDLRSDSATR-LFYCSSF-SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 130 iwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
-|..+...... .-..... .+.......--.|+++-..|.. +-++.++.|+.++.||+++++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i--------------- 148 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI--------------- 148 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE---------------
Confidence 99876543210 0000000 0000001122358999999987 4555555899999999999863
Q ss_pred cccccCCCccEEEEEE-ccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 208 RHLIGKNNIHITGLAY-SNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~-~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
...+.+|...+.++.- +.++++|..+.||++++||.++.+....+.. .+....++.|.. ..|-+++ -+
T Consensus 149 ~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~-------yk~~~~lRp~~g-~wigala---~~ 217 (325)
T KOG0649|consen 149 QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP-------YKNPNLLRPDWG-KWIGALA---VN 217 (325)
T ss_pred EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc-------ccChhhcCcccC-ceeEEEe---cc
Confidence 3445899999999988 5667777777799999999998732211110 011111222222 2355555 46
Q ss_pred CceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhh
Q 013644 287 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI 361 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 361 (439)
..+|++|+. ..+.+|.+++.++...|. -..++..+.|-.| .+++++....|.-|.+.+.-....+......
T Consensus 218 edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 218 EDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTAC 288 (325)
T ss_pred CceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccce
Confidence 788988876 578999999998887776 3456778888544 7788888889999998654444444333333
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=4.1e-17 Score=131.75 Aligned_cols=237 Identities=12% Similarity=0.149 Sum_probs=175.4
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--CcEEEEEccC
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--GFVQHFDLRS 135 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~ 135 (439)
..+..+.|.. +...|..|+.||. ++++....... .........|..+-|+.. +++..+.+ ..+++++++.
T Consensus 6 ~ti~~~~~Nq--d~~~lsvGs~~Gy-k~~~~~~~~k~--~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQ--DSTLLSVGSKDGY-KIFSCSPFEKC--FSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeecc--ceeEEEccCCCce-eEEecCchHHh--hcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEccc
Confidence 4566666877 7777888888874 77777544332 112223345666667654 55554444 3499999988
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
+..+..+. ....|.++.++. +.|++.-.+ .|+|||+++.+++..+... ..+.
T Consensus 78 ~~~ICe~~------------fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~------------~~n~ 129 (391)
T KOG2110|consen 78 KTTICEIF------------FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETT------------PPNP 129 (391)
T ss_pred CceEEEEe------------cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhcc------------CCCc
Confidence 87766655 245689999976 345555544 4999999998876544321 2345
Q ss_pred ccEEEEEEccCCCEEEEe---cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 216 IHITGLAYSNTSELLISY---NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
..+..+.+++.+.+++.- ..|.|.+||..+- +....+..|... +.+++ |+++|.+||+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----------------~~v~~I~aH~~~--lAala-fs~~G~llAT 190 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----------------QPVNTINAHKGP--LAALA-FSPDGTLLAT 190 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccc----------------eeeeEEEecCCc--eeEEE-ECCCCCEEEE
Confidence 557777777777788864 3789999998766 677888889886 99999 8999999999
Q ss_pred eCCCCe-EEEEecCCCceeEeecccc--cceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 293 GSDCGH-LFIWKKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 293 ~~~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+++.|+ ||||.+.+|+.+.+|+--. ..|.+++|+|++++|++.|..++|+||.++..
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 999997 6999999999999987322 47899999999999999999999999988643
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.4e-19 Score=151.23 Aligned_cols=232 Identities=22% Similarity=0.291 Sum_probs=155.3
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCC---------cceeeeecCCcccEEEEEEeecCCCcE
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDR---------REKFSYLSGHLDNIFQTRIMPFTDDRK 73 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~ 73 (439)
.++++.+|++|.++|.|+++.++++.+.+|+.||+|+.|++... ..+...+.||.+.|+.+++++ ....
T Consensus 333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~ 410 (577)
T KOG0642|consen 333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDR 410 (577)
T ss_pred ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccc
Confidence 56789999999999999999999999999999999999965421 234455679999999999999 8889
Q ss_pred EEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 74 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
|++++.||++++|+...... ..+......+.-.++.+-.....+.++...-+.-.+++++.......+.....+.
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~---- 485 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG---- 485 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc----
Confidence 99999999999999865444 2222222223445666655442233333333444444544444444333221111
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
+.....++-+.++|.+ .+.+++..|+.|+++|..+++.
T Consensus 486 ~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~----------------------------------------- 523 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI----------------------------------------- 523 (577)
T ss_pred ccccCccceEEecCCC-CeeEecccCCceeccccccccc-----------------------------------------
Confidence 1122346667777765 6777777777777777776542
Q ss_pred cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 234 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 234 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
+.....|... +++++ +.|+|-+|++++.|+.+++|.+....++...
T Consensus 524 -------------------------------l~s~~a~~~s--vtsla-i~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 524 -------------------------------LHSMVAHKDS--VTSLA-IDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred -------------------------------chheeeccce--eccee-ecCCCceEEeecCCceeehhhccchheeecc
Confidence 2223333332 67777 7788888888888888888887776666666
Q ss_pred cccc
Q 013644 314 VGDR 317 (439)
Q Consensus 314 ~~h~ 317 (439)
..|.
T Consensus 570 ~~~r 573 (577)
T KOG0642|consen 570 TAHR 573 (577)
T ss_pred cccc
Confidence 5554
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8.4e-18 Score=153.08 Aligned_cols=301 Identities=13% Similarity=0.141 Sum_probs=198.7
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEec-CCCCceEEEEEcc-CCCcEEEEeCCCCcEEEEEccC
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLG-KHQGRVYKLAVEP-GSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
.+-..+.|+| -...++++...-.|++||.+.++....+... .....|+.+.+-. +...++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hp--f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHP--FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecC--CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3456688888 6778888887889999999887765332211 1235677777644 3445788999999999997443
Q ss_pred C--CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 136 D--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
. +....+....... ...+...+.-.-+.|....+ .|++++.-..|+|||......... +..+
T Consensus 1143 ~~~~~~eLVTaw~~Ls-~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~d--------------iP~~ 1206 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLS-DQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVAD--------------IPYG 1206 (1387)
T ss_pred cccCCceeEEeecccc-ccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEee--------------cccC
Confidence 3 2222222211111 11111111114467777664 455555578999999987664322 2233
Q ss_pred CCccEEEEEEc-cCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eE
Q 013644 214 NNIHITGLAYS-NTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YV 290 (439)
Q Consensus 214 ~~~~i~~~~~~-~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l 290 (439)
...-++++.-+ ..|.++++| .||.|++||.+..... ..+..++.|.....|..+. +.+.|- .|
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------------s~v~~~R~h~~~~~Iv~~s-lq~~G~~el 1272 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------------SLVCVYREHNDVEPIVHLS-LQRQGLGEL 1272 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCcc-------------ccceeecccCCcccceeEE-eecCCCcce
Confidence 45556666554 346777777 5999999999876321 3556777787766688877 566554 59
Q ss_pred EEeCCCCeEEEEecCCCcee--Eeecccc--c-ceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCc-------h
Q 013644 291 MSGSDCGHLFIWKKKGGKLV--RLMVGDR--H-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN-------A 358 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~--~~~~~h~--~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-------~ 358 (439)
++|+.+|.|++||++..... .....|. + ..+++..|++...+|+|+. +.|+||++.+.++..+..+ .
T Consensus 1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRI 1351 (1387)
T ss_pred eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcC
Confidence 99999999999999864222 2223333 3 5899999999999999998 9999999988776444322 2
Q ss_pred hhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 359 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
..+ ....+++....+++++.|..|.++.....+
T Consensus 1352 gs~-scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1352 GSV-SCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CCc-ceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 222 223355566678888999999999876654
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=161.17 Aligned_cols=283 Identities=19% Similarity=0.261 Sum_probs=202.5
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+.+|.+.|+|+.|.. .|.++++|+.|..++||.+++..+. ....+|.+.|+.++.+.++. ++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDr--tg~~Iitgsdd~lvKiwS~et~~~l--As~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR--TGRYIITGSDDRLVKIWSMETARCL--ASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeecc--ccceEeecCccceeeeeeccchhhh--ccCCCCccccchhccchhhh-hhhhcccCceEEEEe
Confidence 468999999999998 9999999999999999998887776 56899999999999988875 688999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
+..+.++..+.. |.+.|++++|+|. .+.+.||++++||.+-.-. .+.++....
T Consensus 261 l~~~~pvsvLrg-----------htgavtaiafsP~-----~sss~dgt~~~wd~r~~~~-----------~y~prp~~~ 313 (1113)
T KOG0644|consen 261 LPDGAPVSVLRG-----------HTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPR-----------IYVPRPLKF 313 (1113)
T ss_pred cCCCchHHHHhc-----------cccceeeeccCcc-----ccCCCCCceEecccccccc-----------ccCCCCCCc
Confidence 999999888876 7889999999994 2778999999999982111 111222222
Q ss_pred CCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE
Q 013644 213 KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~ 291 (439)
.....+.++.|...+.-+++++ ++.-..|.+... ..+... +.-+.+.+....+.+
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----------------------~~~~~~--lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----------------------AWRSNL--LIFVTRSSDLSSIVV 369 (1113)
T ss_pred ccccceeeeeccccccccccccCCcccccchhhHh----------------------hhhccc--eEEEeccccccccce
Confidence 3345677778888887777776 777666665321 111111 111110111224566
Q ss_pred EeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcE-EEEEecCCeEEEeccCCCCCCC--CCCchhhhhhhhccc
Q 013644 292 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQG 368 (439)
Q Consensus 292 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~ 368 (439)
++-.+-.+.+|++.+|.+.+.+.+|...+..+.++|-... ..+++.||...|||+..+.+.. ..+|..-+ ...++
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~--d~kFS 447 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV--DGKFS 447 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee--ccccC
Confidence 6667788999999999999999999999999999997764 5588999999999997765422 22322222 11133
Q ss_pred cCcceEEEeCCC-cEEEEEEeccccee
Q 013644 369 REDHSRITLTPD-VIMHVLRLQRRQTL 394 (439)
Q Consensus 369 ~~~~~~~~~s~d-g~v~~w~~~~~~~~ 394 (439)
.++. .++.++| |.+.+.....++.+
T Consensus 448 qdgt-s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 448 QDGT-SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCc-eEecCCCCCceEEeccCCCccc
Confidence 3332 3333433 66777765544443
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1e-16 Score=139.82 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=165.0
Q ss_pred EEEecCCCcEEEEEcccCce-eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCC
Q 013644 74 IITSSADGQVRLGQIFEDGR-MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSK 152 (439)
Q Consensus 74 l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 152 (439)
+++...++.|.+|++.+... .....+. +.+....++++|+++++++++..++.|.+|++.............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence 34446789999999964332 2223333 345677899999999766666678999999997322222221111
Q ss_pred CCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 153 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
.......++++|++..++++...++.|.+|++........ .... ..+......++++|+++++++
T Consensus 78 ---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----------~~~~-~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 78 ---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-----------PIQI-IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred ---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----------ceee-ccCCCcccEeEeCCCCCEEEE
Confidence 1123567999998844444444588999999864221100 0000 011234667889999988866
Q ss_pred ec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEEecCC--C
Q 013644 233 YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--G 307 (439)
Q Consensus 233 ~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~ 307 (439)
++ ++.|.+||+.+...... ........... .....+. |+|+|++++++.. ++.|.+|++.. +
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~-----------~~~~~~~~~~g-~~p~~~~-~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVA-----------QEPAEVTTVEG-AGPRHMV-FHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred eeCCCCEEEEEEECCCCcccc-----------cCCCceecCCC-CCCceEE-ECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 64 79999999975311000 00000111111 1245667 8999999988876 89999999873 3
Q ss_pred c--eeEeeccc------ccceEEEeecCCCcEEEEEe-cCCeEEEeccCCCC-CCCCCCchh---hhhhhhccccCcceE
Q 013644 308 K--LVRLMVGD------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAE---KIMKANKQGREDHSR 374 (439)
Q Consensus 308 ~--~~~~~~~h------~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~ 374 (439)
+ .+..+..+ ......+.++|++++|+++. .++.|.+|++.... ...+.++.. ...... ...++..+
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~-~~~dg~~l 288 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFN-IDHSGKYL 288 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceE-ECCCCCEE
Confidence 2 23333221 11234688999999988875 47899999985432 111111111 111111 33445555
Q ss_pred EE-eCCCcEEEEEEec
Q 013644 375 IT-LTPDVIMHVLRLQ 389 (439)
Q Consensus 375 ~~-~s~dg~v~~w~~~ 389 (439)
++ ...+++|.+|++.
T Consensus 289 ~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 289 IAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEccCCcEEEEEEc
Confidence 44 4447888888875
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=9.3e-19 Score=143.61 Aligned_cols=203 Identities=17% Similarity=0.224 Sum_probs=152.8
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeE
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 97 (439)
.+++|+.+|..|++|+.||++|||++.+...+... ..|...|.++.|+| |+.+|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCC--CCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998887666553 68889999999999 99999999999 9999999988555433
Q ss_pred EecCCCCceEEEEEccCC---Cc-EEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEE
Q 013644 98 RLGKHQGRVYKLAVEPGS---PY-IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYF 173 (439)
Q Consensus 98 ~~~~~~~~v~~i~~~~~~---~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 173 (439)
.-.........+.|+.++ .. +++....-+.|+.|++.....-..+...+... ....|.+++.+++| +++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~------~~~siSsl~VS~dG-kf~ 296 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK------RFKSISSLAVSDDG-KFL 296 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh------ccCcceeEEEcCCC-cEE
Confidence 323344556677887776 32 33333445667777765433221111111110 23359999999987 999
Q ss_pred EEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccC
Q 013644 174 AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNM 245 (439)
Q Consensus 174 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 245 (439)
+.|+.+|.|-|++..+.+ +.......|...|+.+.|+|+.++++..+ +.+..+..+..
T Consensus 297 AlGT~dGsVai~~~~~lq--------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQ--------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeccCCcEEEEEeceee--------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999998876 33445578999999999999999888765 77777776654
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.81 E-value=1.4e-16 Score=138.18 Aligned_cols=303 Identities=13% Similarity=0.125 Sum_probs=182.5
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec-CCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS-ADG 81 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg 81 (439)
+.+++.++......-..+.|+|||+++.+++.||.|.++|+.+.+.+.++..+ .....+++++ +|++++++. ..+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~--DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSP--DGKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE----TTTEEEEEEEETT
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcC--CCCEEEEEecCCC
Confidence 45677888765554455789999999999999999999999999877766433 3568899999 999998776 589
Q ss_pred cEEEEEcccCceeeeEEecC-----CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 82 QVRLGQIFEDGRMDTKRLGK-----HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
.+.++|.++.+.+......+ ....+..+..+|..+.++++.-..+.|.+.|....+....-... .
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~----------~ 170 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK----------V 170 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----------
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec----------c
Confidence 99999998877664432222 23467888888988866666666688888888776544322211 1
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-CCEEEEec-
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYN- 234 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~- 234 (439)
........|+|++..++++...+..|-++|..+++....+.... ..|..+...+- +|. |...++..
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-----------~p~~~~~~~~p-hp~~g~vw~~~~~ 238 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-----------KPHPGPGANFP-HPGFGPVWATSGL 238 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS-----------SBEETTEEEEE-ETTTEEEEEEEBS
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc-----------ccccccccccc-CCCcceEEeeccc
Confidence 22356789999885455556677899999998876543222111 11222233221 121 12222222
Q ss_pred ---------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe----CCCCeEEE
Q 013644 235 ---------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG----SDCGHLFI 301 (439)
Q Consensus 235 ---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~----~~dg~i~i 301 (439)
.+.+.+|+... .+.++.+.....+ .-+. .+|+++++.+. ...+.|.+
T Consensus 239 ~~~~~~~ig~~~v~v~d~~~----------------wkvv~~I~~~G~g---lFi~-thP~s~~vwvd~~~~~~~~~v~v 298 (369)
T PF02239_consen 239 GYFAIPLIGTDPVSVHDDYA----------------WKVVKTIPTQGGG---LFIK-THPDSRYVWVDTFLNPDADTVQV 298 (369)
T ss_dssp SSSEEEEEE--TTT-STTTB----------------TSEEEEEE-SSSS-----EE---TT-SEEEEE-TT-SSHT-EEE
T ss_pred cceecccccCCccccchhhc----------------CeEEEEEECCCCc---ceee-cCCCCccEEeeccCCCCCceEEE
Confidence 22333344333 3666777765543 3334 68999999887 44589999
Q ss_pred EecCCCceeEeecccc-cceEEEeecCCCcEEEEEe--cCCeEEEeccCCCCC
Q 013644 302 WKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF 351 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~ 351 (439)
+|.++.+.+..+.... ..+..+.|+++|+.+..+. .++.|.+||..+.++
T Consensus 299 iD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 299 IDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp EECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred EECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 9999998887775332 3588999999999644443 344799999987654
No 206
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.8e-17 Score=134.72 Aligned_cols=257 Identities=17% Similarity=0.291 Sum_probs=176.8
Q ss_pred ccceEEEEECCCC--CEEEEecCCCeEEEEeCCCCcceee-----eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 14 KGCVNAVEFNSTG--DFLVSGSDDKLVIFWDWKDRREKFS-----YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 14 ~~~I~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
...|++++|.-++ ..|...+.+..+..+.+........ .......+|..++.. +..|++|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEEE
Confidence 4567788887655 3455554666677776655443222 223455677777764 4577778889999999
Q ss_pred EcccCc--eeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 87 QIFEDG--RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
..+.+. ......+..+ ..+..+.-++..++++++||.. ..+.+||++.. .+++.....+...-...-...+++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeecc
Confidence 987433 1111223323 5677888889899999999999 88999999987 344443333322221122334556
Q ss_pred EeecCC-CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 163 IVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 163 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
+.|-+. ....|++++.-+.+++||.+.++
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------------------------------------------------- 237 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR-------------------------------------------------- 237 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC--------------------------------------------------
Confidence 666553 02566677766777777766432
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe-ecccccce
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHVV 320 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v 320 (439)
+++..+.-..+. +.++. ..|+++++++|..-|.+..||++.++.+.. +.+-.+.|
T Consensus 238 ---------------------RPV~~fd~~E~~--is~~~-l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 238 ---------------------RPVAQFDFLENP--ISSTG-LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred ---------------------cceeEeccccCc--ceeee-ecCCCcEEEEecccchhheecccCceeeccccCCccCCc
Confidence 122222222332 77777 789999999999999999999999998876 88889999
Q ss_pred EEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+++..+|.+++||++|-|..|||+|+++.++
T Consensus 294 rsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 9999999999999999999999999998654
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=144.76 Aligned_cols=309 Identities=13% Similarity=0.136 Sum_probs=216.0
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCC-CcEEEEeCCCCcEEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGS-PYIIYSCGEDGFVQH 130 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~i 130 (439)
.|..|.+.|..+.|.. .|..|++|+.|..|.+||........ ....+|...|....|-|.. ..-+++++.||.+++
T Consensus 137 kL~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l-~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKL-SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred cccCCCCccceeeecc--cCceeeccCccceEEeehhhccCccc-ccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 4678999999999999 99999999999999999998766543 3456788888888888742 235779999999998
Q ss_pred EEccCCCcee-eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 131 FDLRSDSATR-LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 131 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
=.+....... .... ..|.++|.-++..|+.+..|.+++.|+.+.-+|++....... +..+.
T Consensus 214 s~i~~t~~~e~t~rl---------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~---------~~cr~ 275 (559)
T KOG1334|consen 214 SEILETGYVENTKRL---------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK---------FVCRE 275 (559)
T ss_pred eeeccccceecceec---------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccce---------eeeec
Confidence 7665433322 2211 127888999999999999999999999999999987653221 11111
Q ss_pred cccCCCccEEEEEEccCCC-EEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 210 LIGKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
...........++..|... .++++. |..+++||.+.-....... .+.. -++..+.. .....|++++ |+.++
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~----~~~~-f~p~hl~~-d~~v~ITgl~-Ysh~~ 348 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG----VLDK-FCPHHLVE-DDPVNITGLV-YSHDG 348 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc----hhhh-cCCccccc-cCcccceeEE-ecCCc
Confidence 1111123677888888764 666665 9999999987542111000 0011 11222222 3344599999 78777
Q ss_pred ceEEEeCCCCeEEEEecC--CC----------ceeE-eeccccc--ceEEEee-cCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 288 EYVMSGSDCGHLFIWKKK--GG----------KLVR-LMVGDRH--VVNQLEP-HPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~--~~----------~~~~-~~~~h~~--~v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.-|.+.-.|-.|++|.-. .| ..+. .+++|.. .|..+-| -|...|+++|+.=|.|.||+-.++++
T Consensus 349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 766666777889999532 22 2222 3778874 5777764 78889999999999999999999887
Q ss_pred CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 352 PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
..+......|+.....++.-..+++.+-|-.|++|--
T Consensus 429 i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 429 IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred HHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 4443333336555556666778889999999999976
No 208
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-17 Score=133.12 Aligned_cols=272 Identities=18% Similarity=0.251 Sum_probs=182.4
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc----eeeeecCCc------------ccEEEEEEeecCCCcEEEEe
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE----KFSYLSGHL------------DNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+-|.++.|..+|.+||||..+|.|.++.-..... ....++.|. ..|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46789999999999999999999999997544332 233334443 56889999985566678888
Q ss_pred cCCCcEEEEEcccCceee------------------e----------------EEecCCCCceEEEEEccCCCcEEEEeC
Q 013644 78 SADGQVRLGQIFEDGRMD------------------T----------------KRLGKHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~------------------~----------------~~~~~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
+.|.+|++|.+....... . ..-..|+-.|++|.++.|... ++ ..
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~l-SA 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FL-SA 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Ee-ec
Confidence 899999999986432211 0 001247788999999999874 43 45
Q ss_pred CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCC--CCC
Q 013644 124 EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS--DTP 201 (439)
Q Consensus 124 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~ 201 (439)
.|-.|.+|+++--.....+. ...+.. ...-..-|++..|+|...++|+-.+..|+|++-|++...+-..... ..|
T Consensus 183 DdLRINLWnlei~d~sFnIV--DIKP~n-mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIV--DIKPAN-MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred cceeeeeccccccCCceeEE--EccccC-HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 68899999987544322222 111110 0001234788999999889999999999999999995432211000 000
Q ss_pred cccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc-------
Q 013644 202 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS------- 274 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 274 (439)
.. ...+..+.+--..|..+.|+++|+++++-.--+|++||+.... +++..+..|...
T Consensus 260 ed-p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~---------------~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 260 ED-PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA---------------KPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred cC-CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC---------------CcceEEeehHhHHHHHHHH
Confidence 00 0112222334567889999999999999999999999996653 233344333210
Q ss_pred ---ce---eeeEEeeCCCCceEEEeCCCCeEEEEecCCC
Q 013644 275 ---QT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 275 ---~~---v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
.. -..++ |+.++.++++|+..+.+++|+...|
T Consensus 324 YEnD~IfdKFec~-~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 324 YENDAIFDKFECS-WSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhccchhheeEEE-EcCCcceEecccccceEEEecCCCC
Confidence 00 12344 7888899999999999999996554
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=5e-18 Score=143.46 Aligned_cols=207 Identities=15% Similarity=0.230 Sum_probs=157.6
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCce
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRV 106 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v 106 (439)
..|+.++.||.+.|-+-. + .+......|.+.+.+-.|+| +|.-|++++.||.|++|.-. +-. ...+.....+|
T Consensus 76 d~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-GML--RStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-A-RVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-GML--RSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEeccc-c-hhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEecc-chH--HHHHhhcCcee
Confidence 468888999999998743 3 23344578999999999999 99999999999999999852 222 13355567899
Q ss_pred EEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEe
Q 013644 107 YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 186 (439)
Q Consensus 107 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 186 (439)
.|++|.|+.+.++++.+ +.+.|=.+.....+..... |.+-|.++.|++.+ +++++|++|-..++||
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA-----------HDGiiL~~~W~~~s-~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA-----------HDGLVLSLSWSTQS-NIIASGGEDFRFKIWD 214 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeecccccceeEEec-----------cCcEEEEeecCccc-cceeecCCceeEEeec
Confidence 99999999988776654 4566655555544444443 78889999999987 8999999999999999
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccce
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ 266 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
-....+ .....|..+|++++|+|+ +.++.++-+.+++=..+.
T Consensus 215 ~~G~~L----------------f~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~--------------------- 256 (737)
T KOG1524|consen 215 AQGANL----------------FTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV--------------------- 256 (737)
T ss_pred ccCccc----------------ccCChhccceeeeeeccc-cceeeeeeeeeeecCCCc---------------------
Confidence 775332 122567889999999999 666666655555322222
Q ss_pred eEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 267 VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 267 ~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
..|..+. ||+||..+++|+..|.+.+
T Consensus 257 --------GSifnls-WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 --------GSIFNLS-WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred --------cceEEEE-EcCCCceeeccccCceEEE
Confidence 2488888 8999999999999998765
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.9e-18 Score=139.41 Aligned_cols=201 Identities=13% Similarity=0.139 Sum_probs=150.3
Q ss_pred EEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEe
Q 013644 107 YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 186 (439)
Q Consensus 107 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 186 (439)
..++|+++|. .+++++.||++|+|+......+..... |...|.++.|+|++ .+|++-+.| ..+||+
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~-----------~~~eV~DL~FS~dg-k~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIA-----------HHAEVKDLDFSPDG-KFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHh-----------hcCccccceeCCCC-cEEEEecCC-ceEEEE
Confidence 6899999987 689999999999999776655544433 67789999999997 899999988 999999
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC---C--EEEEec-CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E--LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
.+++..+..... .........+.|+.++ . +++... .+.|..|++........
T Consensus 214 ~~~g~~~a~~t~-------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~--------- 271 (398)
T KOG0771|consen 214 VNTGAALARKTP-------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF--------- 271 (398)
T ss_pred eccCchhhhcCC-------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc---------
Confidence 999854433221 2223445667777666 2 222333 66778877765421100
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee-cccccceEEEeecCCCcEEEEEecCC
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
.+..+....+. .+.+++ .+++|++++.|+.||.|.|++..+.+.++.. +.|...|+.+.|+|+.+++++.+.|.
T Consensus 272 -l~~~~~~~~~~---siSsl~-VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 272 -LRLRKKIKRFK---SISSLA-VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred -cchhhhhhccC---cceeEE-EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 01112222222 389999 8999999999999999999999988877655 47889999999999999999999999
Q ss_pred eEEEeccCC
Q 013644 340 TVKLWAPMP 348 (439)
Q Consensus 340 ~i~iw~~~~ 348 (439)
.+.+..+.-
T Consensus 347 ~~~v~~l~v 355 (398)
T KOG0771|consen 347 EAAVTKLAV 355 (398)
T ss_pred ceeEEEEee
Confidence 999988754
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.79 E-value=2.6e-16 Score=136.56 Aligned_cols=327 Identities=13% Similarity=0.125 Sum_probs=189.9
Q ss_pred CEE-EEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCc
Q 013644 27 DFL-VSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGR 105 (439)
Q Consensus 27 ~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 105 (439)
+++ ++-..++.|.+.|..+.+.+.++-.+. ..-..+.|+| |++++++++.||.|.++|+.+.+.+.. +.. ...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~~-G~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVAT--IKV-GGN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEE--EE--SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEE--Eec-CCC
Confidence 344 455678999999999987777653333 3334577898 999999999999999999998886643 432 245
Q ss_pred eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEE
Q 013644 106 VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 185 (439)
..+++++++|++++++....+.+.++|.++.+.++.+......... ...++.++..+|....++++--..+.|.+.
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG----PESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT----S---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc----cCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 6889999999988878888999999999999998888765433211 244577888788764455555666888888
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
|....+. +...............|+|++++++++ . .+.|.++|..++ +
T Consensus 156 dy~d~~~--------------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----------------k 205 (369)
T PF02239_consen 156 DYSDPKN--------------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----------------K 205 (369)
T ss_dssp ETTTSSC--------------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----------------E
T ss_pred Eeccccc--------------cceeeecccccccccccCcccceeeecccccceeEEEeeccc----------------e
Confidence 8776431 111111224456678999999987765 3 779999998765 2
Q ss_pred cceeEeCCCCcceeeeEEeeCC----------CCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEE
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGP----------NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 333 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 333 (439)
....+.............+.+| .+...++.-....+.+|+..+.+.++.+.....+ .-+..||+++++.
T Consensus 206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEE
T ss_pred EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEE
Confidence 2222221111111111111122 2233322222235667898999999999877666 7788899999998
Q ss_pred EE----ecCCeEEEeccCCCCC-CCCCCchh-hhhhhhccccCcc-eEE-EeCCCcEEEEEEecccceee
Q 013644 334 TC----GIEKTVKLWAPMPTDF-PPLPDNAE-KIMKANKQGREDH-SRI-TLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 334 s~----~~dg~i~iw~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~-~~s~dg~v~~w~~~~~~~~~ 395 (439)
.. ...+.|.++|.++.+. ..+..... .+.... +..++. ..+ ....+|.|.++|.++.+...
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e-f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME-FNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE-E-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE-ECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 87 4458999999987643 22221111 122222 222333 333 33444578888887776664
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1.9e-15 Score=119.91 Aligned_cols=241 Identities=13% Similarity=0.148 Sum_probs=161.8
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC------CcEEEEE
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED------GFVQHFD 132 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd 132 (439)
...+++|.. |...+++|..+| .+||+.+--+...........-.+..+-|- .+++.++||.+ ..|.|||
T Consensus 7 ~~lsvs~NQ--D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQ--DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEcc--CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 345589998 888888877665 799988653332111121111223333332 23455566554 5799999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
-....++..+. ...+|.++.+.++ .+++. ..+.|++|.... .+.+.. ...
T Consensus 82 D~k~~~i~el~------------f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~------------~et- 132 (346)
T KOG2111|consen 82 DLKERCIIELS------------FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHV------------IET- 132 (346)
T ss_pred cccCcEEEEEE------------eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheee------------eec-
Confidence 66665555554 3567999999884 34444 356899999873 222111 111
Q ss_pred cCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 212 GKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
........++.-..+..+||.-+ -|.|.+-|+.... ...+..+.+|... |.+++ .+.+|..
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~-Ln~~Gt~ 195 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVA-LNLQGTL 195 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEE-EcCCccE
Confidence 11122244444334445566544 7899999987641 1145788899887 88888 8999999
Q ss_pred EEEeCCCCe-EEEEecCCCceeEeecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 290 VMSGSDCGH-LFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 290 l~~~~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
+|+++..|+ |||||..+|+++.+++- ....|.+|+|||++.+||.+|+.|+++|+.+....
T Consensus 196 vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999999997 79999999999999863 23589999999999999999999999999986543
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.3e-17 Score=138.48 Aligned_cols=296 Identities=17% Similarity=0.223 Sum_probs=204.2
Q ss_pred ccceeeeeeccccceEEEEECCCCCEE-EEecCCCeEEEEeCCCCcceeeeecCCc--ccEEEEEEeecCCCcEEEEecC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFL-VSGSDDKLVIFWDWKDRREKFSYLSGHL--DNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
+.++++.| +|...-+.|..+|||+|+ |||..-..|++||+....... ..|. ..|.-.-.+. |-..++.-..
T Consensus 41 rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---ERhlDae~V~feiLsD--D~SK~v~L~~ 114 (703)
T KOG2321|consen 41 RIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---ERHLDAEVVDFEILSD--DYSKSVFLQN 114 (703)
T ss_pred HHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---eecccccceeEEEecc--chhhheEeec
Confidence 34455555 377888999999999985 567778899999998754322 2332 2333333443 5556666677
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
|.+|.+... ........++ ..-..++++.-.--++ .++....|+-++++.|..+..+.. ....
T Consensus 115 DR~IefHak--~G~hy~~RIP---~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~-----------~~~~ 177 (703)
T KOG2321|consen 115 DRTIEFHAK--YGRHYRTRIP---KFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFET-----------DSGE 177 (703)
T ss_pred Cceeeehhh--cCeeeeeecC---cCCccccccCCCccEE-EeecCcceEEEEcccccccccccc-----------cccc
Confidence 777766432 1111111222 2234455554333344 555566789999999987776654 3466
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeE
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 238 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i 238 (439)
++++..++-. .+|++|+.+|.|..||.+.......+.....+... ........|+++.|+.+|-.+++|. +|.+
T Consensus 178 lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 178 LNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccCCcE
Confidence 9999999977 79999999999999999988766554433222111 1122234599999999999999986 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
.+||+++. .+...+.|....+|..+.|...+++--+.......++|||-.+|+....+.. ..
T Consensus 253 ~iyDLRa~-----------------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~ 314 (703)
T KOG2321|consen 253 LIYDLRAS-----------------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TS 314 (703)
T ss_pred EEEEcccC-----------------CceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cC
Confidence 99999985 4456677877778999995444443333334457899999999999888774 34
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEe
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
.++.+++-|++.+++++-.++.+..|
T Consensus 315 ~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 315 DLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred CcCceeeecCCceEEEecCCCcceeE
Confidence 59999999999999999888877665
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.3e-16 Score=126.27 Aligned_cols=299 Identities=10% Similarity=0.088 Sum_probs=191.1
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR- 93 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~- 93 (439)
-.+..++|++.-..+|++..|-.|++|+-.. .....+.......|++++|-|. ....|+.|+. +-|.+|.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCccccc
Confidence 4577899998766788999999999999766 4444444456678999999994 4456666665 4689998643211
Q ss_pred -----------eeeEEecCCCCceEEEEEccCCCcEEEEeC-CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 94 -----------MDTKRLGKHQGRVYKLAVEPGSPYIIYSCG-EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 94 -----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.....-.+| .+|+++.|.+||.. +++++ .|..|.|||..++..+..... ..+.+.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~~~pL~~~-----------glgg~s 242 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQKIPLIPK-----------GLGGFS 242 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCCccccccc-----------CCCcee
Confidence 112223445 68999999999985 54554 577899999999987765522 245588
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
-+.|+|++ .+|++++-|+..++|....... +.+.. -..+.|....|+|+|++|.....+.-.+|
T Consensus 243 lLkwSPdg-d~lfaAt~davfrlw~e~q~wt-------------~erw~--lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 243 LLKWSPDG-DVLFAATCDAVFRLWQENQSWT-------------KERWI--LGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eEEEcCCC-CEEEEecccceeeeehhcccce-------------eccee--ccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 89999998 8999999999999996554221 11111 12348999999999998877766666666
Q ss_pred EccCCCCCCCCCCCcccc------cccccceeEeCCC-CcceeeeEEeeCCCCceEEEeCCC--------CeEEEEecCC
Q 013644 242 EKNMGLGPSPLSLSPEDL------QKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKG 306 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~v~~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~ 306 (439)
.+.-......... +... ..+.......+.. -.....+++ |.|.|.+||+.-.. ..|.+||...
T Consensus 307 sl~f~~~~~~~~~-~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la-wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 307 SLTFDGEDSVFLR-PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA-WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEeecCCCccccC-cccceeeeeeccchhhhhhcCcccccCccceee-ECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 6544322211110 1111 1111111111211 123478888 89999999986543 3466777664
Q ss_pred CceeEee-ccc--ccceEEEeecC---CCcEEEEEecCCeEEEeccC
Q 013644 307 GKLVRLM-VGD--RHVVNQLEPHP---HIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 307 ~~~~~~~-~~h--~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~ 347 (439)
.-.+... -+. ......+.|+| ++.+|..+=.-|.+.-|.+.
T Consensus 385 sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 385 SPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 4332221 011 11244566665 45677777777888877764
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=5.2e-17 Score=129.17 Aligned_cols=293 Identities=17% Similarity=0.252 Sum_probs=184.5
Q ss_pred cceEEEEECCCCCEEE-EecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCCCcEEEEEcccCc
Q 013644 15 GCVNAVEFNSTGDFLV-SGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~ 92 (439)
+.|.-+.|..|..+++ ....++.|.+|++...+-..++ ..-...+.+++|+| +|+.| .+...+-.|.+|.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccce
Confidence 6688889998886654 4578899999999887766665 45567899999999 99655 456668999999998776
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc---CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR---SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
... ++-.+..+..++|+|+|++. +.++.......+++. .-...+.+.. .....+.+.|+|+|
T Consensus 126 ~~~---~~~pK~~~kg~~f~~dg~f~-ai~sRrDCkdyv~i~~c~~W~ll~~f~~-----------dT~DltgieWsPdg 190 (447)
T KOG4497|consen 126 GYL---LPHPKTNVKGYAFHPDGQFC-AILSRRDCKDYVQISSCKAWILLKEFKL-----------DTIDLTGIEWSPDG 190 (447)
T ss_pred eEE---ecccccCceeEEECCCCcee-eeeecccHHHHHHHHhhHHHHHHHhcCC-----------CcccccCceECCCC
Confidence 543 33334567899999999853 333332111111111 1111111111 23346789999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 248 (439)
+.+++ ||-.-.- ........-.+..+.|+|.+++|+.|+ |+.+++.+--+...
T Consensus 191 -~~laV---------wd~~Ley----------------kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 191 -NWLAV---------WDNVLEY----------------KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred -cEEEE---------ecchhhh----------------eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 55554 4421100 000011234578899999999999997 88887765322210
Q ss_pred CC-----------------------------CCCCCccc---------------------ccccccceeEeCCCCcceee
Q 013644 249 PS-----------------------------PLSLSPED---------------------LQKREEPQVYSGHRNSQTVK 278 (439)
Q Consensus 249 ~~-----------------------------~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~ 278 (439)
-. ...+.+.+ ++..+++..+... ...+-
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP--k~g~g 322 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP--KCGAG 322 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc--ccccc
Confidence 00 00000000 1111111111111 12255
Q ss_pred eEEeeCCCCceEEEeCCC--CeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCC
Q 013644 279 GVNFFGPNDEYVMSGSDC--GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP 355 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 355 (439)
-++ |++|..|+++-.+. +.+.+||++..++...+. ...+|....|+|....|+.+.....+.+|.+........+
T Consensus 323 ~la-fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 323 KLA-FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred eee-ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 667 89999999998664 789999999877665554 3468999999999998888887888999999775443333
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=5.2e-17 Score=137.43 Aligned_cols=264 Identities=11% Similarity=0.150 Sum_probs=177.9
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCce-EEEEEcc------CCCcEEEEeCCCCc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRV-YKLAVEP------GSPYIIYSCGEDGF 127 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v-~~i~~~~------~~~~~l~s~~~dg~ 127 (439)
.|...+.++.|+. +...+. ++.|..+.+|.-.+........+. ..-| +.+..-+ .+...|+.++.||.
T Consensus 12 r~~e~vc~v~w~~--~eei~~-~~dDh~~~~~~~~~~~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS--NEEIYF-VSDDHQIFKWSDVSRDSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccc--cceEEE-eccCceEEEeecccchhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCce
Confidence 5667777888985 444444 455555555543232222111111 1111 1111111 11235778899999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
+.+.+- .++..+.+.. |.+.+.+-.|+|+| .-|+++++||.|++|.-.. . .
T Consensus 87 f~il~k-~~rVE~sv~A-----------H~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsG-M---------------L 137 (737)
T KOG1524|consen 87 FVILNK-SARVERSISA-----------HAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSG-M---------------L 137 (737)
T ss_pred EEEecc-cchhhhhhhh-----------hhhhhhhcccCCCC-ceeeeecCCceEEEEeccc-h---------------H
Confidence 988863 3444443332 78889999999998 7899999999999999543 2 2
Q ss_pred cccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
+........+|.|++|.|+..-++.+..+.+.+=.+... ..+...+.|.+- |.++. |++..
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~-W~~~s 198 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN----------------SKIIRWRAHDGL--VLSLS-WSTQS 198 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc----------------cceeEEeccCcE--EEEee-cCccc
Confidence 333345577899999999998888888888888777654 455677888876 99999 89999
Q ss_pred ceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhcc
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ 367 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 367 (439)
+++++|++|-..++||.. |..+..-..|..+|++++|.|+ +.++.++. .++|+=.+ ..+.++... |
T Consensus 199 ~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p----------~~GSifnls-W 264 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP----------RVGSIFNLS-W 264 (737)
T ss_pred cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC----------CccceEEEE-E
Confidence 999999999999999976 7777777789999999999999 66666654 35552222 233444444 4
Q ss_pred ccCcceEEEeCCCcEEEE
Q 013644 368 GREDHSRITLTPDVIMHV 385 (439)
Q Consensus 368 ~~~~~~~~~~s~dg~v~~ 385 (439)
+.++..+..+...|.+.+
T Consensus 265 S~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 265 SADGTQATCGTSTGQLIV 282 (737)
T ss_pred cCCCceeeccccCceEEE
Confidence 555556666666666554
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2.1e-16 Score=142.03 Aligned_cols=226 Identities=12% Similarity=0.040 Sum_probs=145.2
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC--CCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE--DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
+..|.+||..... . ..+..|...+...+|+|+|++++++... +..|++||+.+++....... .
T Consensus 183 ~~~i~i~d~dg~~-~--~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~------------~ 247 (429)
T PRK01742 183 PYEVRVADYDGFN-Q--FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF------------R 247 (429)
T ss_pred eEEEEEECCCCCC-c--eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC------------C
Confidence 4689999985443 2 3466678889999999999976544432 34799999988764332211 1
Q ss_pred eeeEEEeecCCCCcEEEE-eecCceEEEE--eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 158 IRLNAIVIDPRNPNYFAV-GGSDEYARVY--DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
.....++|+|++ +.|+. ...+|.+.|| |+.+++. . .+..+...+....|+|+|+.|+..+
T Consensus 248 g~~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~---------------~-~lt~~~~~~~~~~wSpDG~~i~f~s 310 (429)
T PRK01742 248 GHNGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP---------------S-QLTSGAGNNTEPSWSPDGQSILFTS 310 (429)
T ss_pred CccCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe---------------E-eeccCCCCcCCEEECCCCCEEEEEE
Confidence 123468999998 55554 4567765555 5554331 1 1133445677899999999776553
Q ss_pred --CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe
Q 013644 235 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 312 (439)
Q Consensus 235 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 312 (439)
++...+|++.... .....+ .+.. .... |+|+|++|+..+.++ +.+||+.+++....
T Consensus 311 ~~~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~-~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l 368 (429)
T PRK01742 311 DRSGSPQVYRMSASG---------------GGASLV-GGRG----YSAQ-ISADGKTLVMINGDN-VVKQDLTSGSTEVL 368 (429)
T ss_pred CCCCCceEEEEECCC---------------CCeEEe-cCCC----CCcc-CCCCCCEEEEEcCCC-EEEEECCCCCeEEe
Confidence 6778888765431 111112 2221 2345 899999998887754 56699988876533
Q ss_pred ecccccceEEEeecCCCcEEEEEecCCeEEEecc---CCCCCCCCCCchhhh
Q 013644 313 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKI 361 (439)
Q Consensus 313 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~---~~~~~~~~~~~~~~~ 361 (439)
...+ ....+.|+|+|++|+.++.++.+.+|.+ .+.....+..+...+
T Consensus 369 t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 369 SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred cCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 3222 2356789999999999999998888775 343445555444433
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=3e-16 Score=132.91 Aligned_cols=291 Identities=13% Similarity=0.130 Sum_probs=175.5
Q ss_pred CCcEEEEecCCCcEEEEEcccCcee----eeEEecCCCCceEEEEE-----ccCCCcEEEEeCCCCcEEEEEccCCCcee
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRM----DTKRLGKHQGRVYKLAV-----EPGSPYIIYSCGEDGFVQHFDLRSDSATR 140 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~v~~i~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 140 (439)
.+++|+..-. ..+.+|+.+..... ....+. .. ...|-+| .|.+-. ++.|-.-|.|.+.|....+..+
T Consensus 134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~-gt-~P~cHdfn~~~a~~~g~d-llIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYK-GT-SPTCHDFNSFTATPKGLD-LLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEecC-CeEEEEEccCcchhccchhhhccc-CC-CCceecccccccCCCCcc-eEEeeccCceEEecchhhHHHH
Confidence 5666655433 35778887632221 111111 11 1223333 234433 4477778889998887744433
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCC-----CCCCCCcc--------cccc
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-----ISSDTPVD--------TFCP 207 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~--------~~~~ 207 (439)
.+...... .+..++++.|-|-+...|+++-.+|.+++||......... +....... .-.+
T Consensus 210 lfne~r~i-------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 210 LFNEERLI-------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hhhhcccc-------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 33322222 4567999999998888999999999999998632211100 00000000 0001
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
.....-....|...+|+|||++||+.+ ||.++|||+.+. +.+..++..-.. ..|++ ||||
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----------------eLlg~mkSYFGG--LLCvc-WSPD 343 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----------------ELLGVMKSYFGG--LLCVC-WSPD 343 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH----------------HHHHHHHhhccc--eEEEE-EcCC
Confidence 111112345789999999999999987 999999999765 344444444333 88999 8999
Q ss_pred CceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEec-------CCeE----EEeccCCCCCCCCC
Q 013644 287 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-------EKTV----KLWAPMPTDFPPLP 355 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~i----~iw~~~~~~~~~~~ 355 (439)
|+||++|++|-.|.||.+...+.+..-++|...|+.|+|.| |..+.-. |+.. .-.+....- ...
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~--~~S 418 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDFEIRANG--TGS 418 (636)
T ss_pred ccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc---cccccccccccccccccccchhcccccccCC--CCC
Confidence 99999999999999999999999999999999999999987 2222221 1111 000000000 000
Q ss_pred CchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 356 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
....+.............+-+.+.|-++.+||+.......
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0000111111111123466788999999999998876655
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.5e-15 Score=136.11 Aligned_cols=236 Identities=11% Similarity=0.063 Sum_probs=154.0
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec---CCCcEEEEEcccCceeeeEEecCCCCceEEEEEc
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS---ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVE 112 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 112 (439)
..|.+||.+..... . +..+...+...+|+| ||+.|+..+ .+..|.+|++.+++......+. +.+..++|+
T Consensus 179 ~~l~~~d~dg~~~~-~-lt~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQF-V-VHRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCCE-E-eecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEEC
Confidence 37999998765432 2 235667899999999 999998654 2457999999876544333333 344568999
Q ss_pred cCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce--EEEEeCc
Q 013644 113 PGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY--ARVYDIR 188 (439)
Q Consensus 113 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~ 188 (439)
|+|+.++++...+| .|++||+.+++..+... +...+....|+|++..++++...++. |.++|+.
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence 99997776666555 48889998876543321 12246778999998444444444444 4444655
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C--CeEEEEEccCCCCCCCCCCCccccccccc
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D--ELVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
+++.. .+ ...........|+|+|++++... + ..|++||+.++.
T Consensus 320 ~g~~~---------------~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------------- 366 (429)
T PRK03629 320 GGAPQ---------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------------- 366 (429)
T ss_pred CCCeE---------------Ee-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----------------
Confidence 54310 11 11223355688999999887653 2 368889987651
Q ss_pred ceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCe---EEEEecCCCceeEeecccccceEEEeecCC
Q 013644 265 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH---LFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 265 ~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
...+..... ..... |+|||++|+..+.++. +.++++ +|+....+.+|.+.+...+|+|-
T Consensus 367 ~~~Lt~~~~---~~~p~-~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 367 VQVLTDTFL---DETPS-IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEEeCCCCC---CCCce-ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 222222111 22344 8999999998887754 677777 46666777788888999999883
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=4.1e-17 Score=135.54 Aligned_cols=276 Identities=13% Similarity=0.186 Sum_probs=201.0
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 94 (439)
..-+.+.|+.+|++|+.|+..|.|-.+|+.++.....+ .-...|.++.|.. +.+++|++- ...+.|||-.. ..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LH--neq~~AVAQ-K~y~yvYD~~G-tE- 202 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLH--NEQFFAVAQ-KKYVYVYDNNG-TE- 202 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhc--chHHHHhhh-hceEEEecCCC-cE-
Confidence 34567899999999999999999999999998766554 3456899999987 777777664 46889998643 22
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
.+.+..| ..|..+.|.|.. ++|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|-+ ..+-
T Consensus 203 -lHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t-----------~~G~~~vm~qNP~N-aVih 267 (545)
T KOG1272|consen 203 -LHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRT-----------GAGRTDVMKQNPYN-AVIH 267 (545)
T ss_pred -Eeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHc-----------cCCccchhhcCCcc-ceEE
Confidence 2455544 578999999987 5899999999999999999998877765 35567888889987 7899
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCC
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLS 253 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 253 (439)
+|...|+|.+|.....+. ...+..|.++|.++++.++|+++++++ |..++|||+++-
T Consensus 268 ~GhsnGtVSlWSP~skeP---------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~------- 325 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEP---------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF------- 325 (545)
T ss_pred EcCCCceEEecCCCCcch---------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-------
Confidence 999999999999887542 223367899999999999999999998 999999999865
Q ss_pred CCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEe-cCC--CceeEeeccc--ccceEEEeecCC
Q 013644 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK-KKG--GKLVRLMVGD--RHVVNQLEPHPH 328 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd-~~~--~~~~~~~~~h--~~~v~~~~~s~~ 328 (439)
..+.++.. +.....++ +|..| +++.+....+.||. .-. +.....+..| .++|..+.|.|-
T Consensus 326 ---------~ql~t~~t---p~~a~~ls-~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 326 ---------YQLHTYRT---PHPASNLS-LSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred ---------cccceeec---CCCccccc-ccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 23333332 11244555 55433 33344445799996 222 1121222223 258999999998
Q ss_pred CcEEEEEecCCeEEEeccCCC
Q 013644 329 IPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw~~~~~ 349 (439)
...|-.|-..|.-.|-=+..+
T Consensus 391 EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 391 EDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred HHeeeccccCCceeEeccCCC
Confidence 777776666654444433333
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4e-16 Score=132.54 Aligned_cols=237 Identities=22% Similarity=0.296 Sum_probs=158.5
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC-CCcEEEEeCCCCcEEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG-SPYIIYSCGEDGFVQH 130 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~i 130 (439)
.+.+|++.|+++.|+. +|.+|++|+.|-.+.|||....+.+ ...-.+|...|.++.|-|. ++.++++|..|..|++
T Consensus 45 eL~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kll-hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLL-HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhccccceecceeecC--CCCEEeecCCcceEEeecchhccee-eeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 4689999999999999 9999999999999999999755444 3345689999999999984 4458889999999999
Q ss_pred EEccCCC----------ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCC
Q 013644 131 FDLRSDS----------ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 200 (439)
Q Consensus 131 wd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 200 (439)
+|+...+ ....+.+ |..+|..++..|.+++.+.++++||+++-||++....-..-.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~c-----------ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--- 187 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSC-----------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--- 187 (758)
T ss_pred EecccccccccccCccchhhhhhh-----------hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc---
Confidence 9998522 2222222 667788999999999999999999999999999744211110
Q ss_pred Cccccccccc--ccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCC--CcccccccccceeEe-CCC-
Q 013644 201 PVDTFCPRHL--IGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSL--SPEDLQKREEPQVYS-GHR- 272 (439)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~- 272 (439)
-++... .........++.++|.. .+|++|+ +-..++||.+...++....- .+.+...-.+++.+. +|.
T Consensus 188 ----~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 188 ----DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred ----cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 011111 01122456788999876 6677775 88999999654332221110 000010111111111 111
Q ss_pred -----Ccce---eeeEEeeCCCCceEEEeCCCCeEEEEecCCCcee
Q 013644 273 -----NSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 310 (439)
Q Consensus 273 -----~~~~---v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 310 (439)
.... ++-+. |+|+|.-|+..-..-.|+++|+..++..
T Consensus 264 n~~gn~~~~~~~~t~vt-fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVT-FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CcccccccceeeeEEEE-ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0011 33444 8999976666555568999998876544
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=5.2e-14 Score=111.82 Aligned_cols=238 Identities=13% Similarity=0.168 Sum_probs=162.4
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCc--ccEEEEEEeecCCCcEEE-EecCC------CcEEEE
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL--DNIFQTRIMPFTDDRKII-TSSAD------GQVRLG 86 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~-s~~~d------g~i~iw 86 (439)
...+++|+.|...++.|..+| .+||+.+.-++.... ..+. -.+..+-| ..++|+ .|+.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhh----hhceEEEecCCCCCCCCCceEEEE
Confidence 345699999999999988766 899998764332211 1111 22333334 234554 33332 579999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc-CCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR-SDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|=.....+.. +. ...+|.++.+.++. ++ +. ..+.|++|... ..+.+..+..... ...+.+++-
T Consensus 81 DD~k~~~i~e--l~-f~~~I~~V~l~r~r--iV-vv-l~~~I~VytF~~n~k~l~~~et~~N---------PkGlC~~~~ 144 (346)
T KOG2111|consen 81 DDLKERCIIE--LS-FNSEIKAVKLRRDR--IV-VV-LENKIYVYTFPDNPKLLHVIETRSN---------PKGLCSLCP 144 (346)
T ss_pred ecccCcEEEE--EE-eccceeeEEEcCCe--EE-EE-ecCeEEEEEcCCChhheeeeecccC---------CCceEeecC
Confidence 9544444433 32 45899999999873 33 33 46789999988 4444444443221 112333333
Q ss_pred cCCCCcEEEE-eecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC-eEEEEE
Q 013644 166 DPRNPNYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-LVYLFE 242 (439)
Q Consensus 166 ~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~-~i~i~d 242 (439)
+... .+||. |-.-|.|+|-|+...+. .+...+.+|...|.+++.+-+|.++|+++ .| -|+|||
T Consensus 145 ~~~k-~~LafPg~k~GqvQi~dL~~~~~-------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 145 TSNK-SLLAFPGFKTGQVQIVDLASTKP-------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred CCCc-eEEEcCCCccceEEEEEhhhcCc-------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 3222 34443 44678999999987542 13455689999999999999999999997 55 689999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
..++ ..++.+........+.+++ |||+..+||++|+.|++.||.++.
T Consensus 211 t~~g----------------~~l~E~RRG~d~A~iy~ia-FSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 211 TEDG----------------TLLQELRRGVDRADIYCIA-FSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCCC----------------cEeeeeecCCchheEEEEE-eCCCccEEEEEcCCCeEEEEEeec
Confidence 9988 5677777666667799999 899999999999999999998765
No 223
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.73 E-value=1.4e-15 Score=121.81 Aligned_cols=255 Identities=17% Similarity=0.189 Sum_probs=178.3
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCC-CCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWK-DRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
+..+++.++||.+.|++...-|...-+++.+.|.++|||--. .++.-..+......+++++.+.+ +...|+.|-..|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ng 90 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNG 90 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecc
Confidence 345678899999999999999988889999999999999643 33333333334567889999998 899999999999
Q ss_pred cEEEEEcccC--ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 82 QVRLGQIFED--GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 82 ~i~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
++.-+.+... +....+....|...+..+.|+.... .+++.+.|..+.---.+.+..+..+.... .
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------------~ 157 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFET------------P 157 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeec------------c
Confidence 9988877542 2233345667999999999988776 56688888776655555554433322110 0
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeE
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 238 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i 238 (439)
..++.+.- .+...|...|.+.+-.+.... ..+.....+|...+.+++|.+..++|.++. |..+
T Consensus 158 ~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~-------------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 158 ASALQFDA---LYAFVGDHSGQITMLKLEQNG-------------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred CCCCceee---EEEEecccccceEEEEEeecC-------------CceEEEEcCcccceEEEEEcCCCcEEEeccccCce
Confidence 11111111 134445555665555444322 133445578999999999999999999886 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
.+||+.... .....+.+|... +..+. .-+--+.+++++.||.|.+|+++.
T Consensus 222 i~wdigg~~---------------g~~~el~gh~~k--V~~l~-~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 222 IMWDIGGRK---------------GTAYELQGHNDK--VQALS-YAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEeccCCc---------------ceeeeeccchhh--hhhhh-hhhhheeeeeccCCCeEEEEeccc
Confidence 999997652 233455666655 66666 455668899999999999999764
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=7.9e-15 Score=136.12 Aligned_cols=269 Identities=11% Similarity=0.119 Sum_probs=171.5
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-----eeeEEecCCCCceEEEEEccCCCcEEEEeCC
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-----MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 124 (439)
...+..|...+..++.++ +.+.++++|+.||+|++|+.+.-.. ....++......+.++...+.+.. +|.++.
T Consensus 1041 VAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~-~Av~t~ 1118 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ-FAVSTK 1118 (1431)
T ss_pred eehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe-EEEEcC
Confidence 344678999999999887 1449999999999999999864321 112223335678899999998884 778899
Q ss_pred CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc-EEEEeecCceEEEEeCcCCcccCCCCCCCCcc
Q 013644 125 DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN-YFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 203 (439)
Q Consensus 125 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 203 (439)
||.|++.++...............+.... ....+..-+|...... .++.+...+.|..||++..........
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~--~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~----- 1191 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKK--DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN----- 1191 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccC--CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-----
Confidence 99999999887322221111111111110 1112333344433333 788889999999999998653322211
Q ss_pred cccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEE-
Q 013644 204 TFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN- 281 (439)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 281 (439)
....+.|++++.+|.+.+++.|+ .|.+.+||++-+. ++..+. |.....+..+.
T Consensus 1192 --------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~----------------~i~sw~-~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1192 --------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV----------------PILSWE-HPARAPIRHVWL 1246 (1431)
T ss_pred --------CccccceeEEEecCCceEEEEecCCceEEEEEeecCc----------------eeeccc-CcccCCcceEEe
Confidence 33467899999999999999996 9999999997551 111111 11112233333
Q ss_pred -eeCCCCceEEEeC--CCCeEEEEecCCCceeEeeccc-------------------ccceEEEeecCCCcEEEEEecCC
Q 013644 282 -FFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGD-------------------RHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 282 -~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h-------------------~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
.+.|...+.++++ ..+.|.+|++.+|.+...+... .-......+...+.++.+|+.|+
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence 2334334554444 4789999999998766555322 01112233333456899999999
Q ss_pred eEEEeccCCCCCC
Q 013644 340 TVKLWAPMPTDFP 352 (439)
Q Consensus 340 ~i~iw~~~~~~~~ 352 (439)
.|+.||....+..
T Consensus 1327 kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEIS 1339 (1431)
T ss_pred ceeeccCCCcccc
Confidence 9999999766543
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1e-14 Score=130.75 Aligned_cols=228 Identities=11% Similarity=0.059 Sum_probs=144.6
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeC--CCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG--EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..|.+||...... ..+..+...+...+|+|+|+.++++.. .+..|.+|++.+++....... ..
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~------------~~ 243 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF------------PR 243 (429)
T ss_pred eeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC------------CC
Confidence 3688888864433 224446678999999999997665432 345799999988764332211 12
Q ss_pred eeEEEeecCCCCcEEEEeecCc--eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 234 (439)
......|+|++..++++.+.+| .|++||+.+++... + ..+...+....|+|+|+.|+..+
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---------------l-t~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---------------V-TDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------c-cCCCCCcCceEECCCCCEEEEEeCC
Confidence 2446899999854555545555 58889998764211 1 22234567889999999887664
Q ss_pred CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCce
Q 013644 235 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL 309 (439)
Q Consensus 235 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~ 309 (439)
++ .|+++++.++ ....+...... ..... |+|+|++|+..+.+ ..|.+||+.+++.
T Consensus 308 ~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~-~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 308 AGRPQVYKVNINGG-----------------APQRITWEGSQ--NQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CCCceEEEEECCCC-----------------CeEEeecCCCC--ccCEE-ECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 33 4555565543 12222222221 34455 89999998776543 4688999988865
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecCCe---EEEeccCCCCCCCCCCchhhh
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPPLPDNAEKI 361 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~---i~iw~~~~~~~~~~~~~~~~~ 361 (439)
.. +... .......|+|||++|+.++.++. +.+++++++....+..+...+
T Consensus 368 ~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 368 QV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 420 (429)
T ss_pred EE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCc
Confidence 43 3321 22346789999999999888764 677888776666665544443
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=4.1e-15 Score=134.02 Aligned_cols=235 Identities=13% Similarity=0.080 Sum_probs=151.2
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC---CCcEEEEEcccCceeeeEEecCCCCceEEEEEc
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVE 112 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 112 (439)
..|.+||..... ... +..+...+.+.+|+| +++.|+..+. ...|.+|++.+++... +....+...+.+|+
T Consensus 184 ~~l~i~D~~g~~-~~~-lt~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYN-PQT-ILRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCC-ceE-eecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceEC
Confidence 469999986543 333 346677899999999 9999988764 3469999998766533 33334455678999
Q ss_pred cCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce--EEEEeCc
Q 013644 113 PGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY--ARVYDIR 188 (439)
Q Consensus 113 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~ 188 (439)
|+|+.++++.+.+| .|++||+.+++...... +.......+|+|++..++++...+|. |+++++.
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~------------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN------------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECcc------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99997776766665 59999998876433221 12224567999998444444444554 6666665
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C---CeEEEEEccCCCCCCCCCCCccccccccc
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D---ELVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
+++.. .+ ..........+|+|+|+.++..+ + ..|.+||+.++.
T Consensus 325 ~g~~~---------------~l-t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~----------------- 371 (433)
T PRK04922 325 GGSAE---------------RL-TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS----------------- 371 (433)
T ss_pred CCCeE---------------Ee-ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC-----------------
Confidence 54311 00 11122344689999999887653 2 269999987651
Q ss_pred ceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCceeEeecccccceEEEeecC
Q 013644 265 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 327 (439)
Q Consensus 265 ~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 327 (439)
...+..... ..... |+|||++|+..+.+ +.|.++++. +.....+..+.+.+...+|+|
T Consensus 372 ~~~Lt~~~~---~~~p~-~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 372 VRTLTPGSL---DESPS-FAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEECCCCCC---CCCce-ECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 122221111 23345 89999988776553 468888885 445566655666777888887
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.6e-14 Score=122.03 Aligned_cols=281 Identities=11% Similarity=0.174 Sum_probs=187.0
Q ss_pred ceEEEEECCCCCEEEEe-----c-----CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 16 CVNAVEFNSTGDFLVSG-----S-----DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~-----~-----~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
.++++.|+|-|.+|.|= . ....+++|++.++.....+....+.. ++..|++ |.. |++--..+.+.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~--dEs-l~arlv~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI--DES-LAARLVSNEVQF 150 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc--chh-hhhhhhcceEEE
Confidence 67899999999998862 1 12468899999854444433333333 6889997 554 443344578999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCC-CcEEEE-----eCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGS-PYIIYS-----CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
|++...+.. ...+ |...|+.+.++|.. ...+++ .|.-+.|++|..........+....+. ...
T Consensus 151 ~~~~~f~~~-~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--------kad 219 (566)
T KOG2315|consen 151 YDLGSFKTI-QHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--------KAD 219 (566)
T ss_pred EecCCccce-eeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--------ccc
Confidence 998764333 2222 56789999999984 333332 355567999987744333333322222 222
Q ss_pred eEEEeecCCCCcEEEEeecC-----------ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 013644 160 LNAIVIDPRNPNYFAVGGSD-----------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 228 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (439)
-..+.|++.+..+|+.++.| ..++++++.... ..+.....++|.++.|+|+++
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----------------~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----------------VSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----------------EEEecCCCCCceEEEECCCCC
Confidence 34577888776666655432 356777766322 112234478999999999997
Q ss_pred EEEEe-c--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC---CCeEEEE
Q 013644 229 LLISY-N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIW 302 (439)
Q Consensus 229 ~l~~~-~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~---dg~i~iw 302 (439)
-+++. + -..+.+||++.. ..+.-..++ -+++- |+|.|++|+.++- .|.|-||
T Consensus 284 EF~VvyGfMPAkvtifnlr~~-------------------~v~df~egp--RN~~~-fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRGK-------------------PVFDFPEGP--RNTAF-FNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred EEEEEEecccceEEEEcCCCC-------------------EeEeCCCCC--ccceE-ECCCCCEEEEeecCCCCCceEEE
Confidence 66554 3 678999998653 233333322 34444 8999999988765 4899999
Q ss_pred ecCCCceeEeecccccceEEEeecCCCcEEEEEec------CCeEEEeccCCCCC
Q 013644 303 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 351 (439)
Q Consensus 303 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~ 351 (439)
|..+.+++..+.... -+-+.|+|||++++|+.. |+.++||+..+..+
T Consensus 342 Dv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred eccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 999999988887543 355889999999998875 78899999987655
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.4e-14 Score=130.07 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=147.6
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---CcEEEEEcccCceeeeEEecCCCCceEEEEEc
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVE 112 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 112 (439)
..|.++|.... .... +..+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++... +....+.+...+|+
T Consensus 176 ~~L~~~D~dG~-~~~~-l~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQ-NAQS-ALSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCC-CceE-eccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEEC
Confidence 46777776443 3233 346778899999999 99999877643 459999998776543 22233556789999
Q ss_pred cCCCcEEEEeCCCCcEEEEEcc--CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc--
Q 013644 113 PGSPYIIYSCGEDGFVQHFDLR--SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-- 188 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-- 188 (439)
|+|+.++++.+.++...+|.+. .+.. ..+.. +........|+|++..+++++..++...+|.+.
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~-----------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ-----------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc-EECCC-----------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 9999777778888876666553 3332 22211 122345678999985444454445666666553
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC---eEEEEEccCCCCCCCCCCCccccccccc
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE---LVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
+++. ..+ ...........|+|+|++++..+ ++ .|.+||+.++.
T Consensus 317 ~g~~---------------~~l-t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----------------- 363 (427)
T PRK02889 317 GGAA---------------QRV-TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ----------------- 363 (427)
T ss_pred CCce---------------EEE-ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC-----------------
Confidence 3221 000 11112234578999999888664 32 69999987651
Q ss_pred ceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC---eEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 265 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 265 ~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
...+..... ..... |+|||++|+..+.++ .+.+.+. +++....+..+.+.+...+|+|-
T Consensus 364 ~~~lt~~~~---~~~p~-~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VTALTDTTR---DESPS-FAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEccCCCC---ccCce-ECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 122222111 23445 899999988776543 3556666 46666666666677888889874
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.1e-14 Score=128.58 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=151.7
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC---CCcEEEEEcccCceeeeEEecCCCCceEEEEEc
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVE 112 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 112 (439)
..|.+||...... .. +..|...+...+|+| |++.|+..+. +..|.+|++.+++.. .+..+.+.+...+|+
T Consensus 182 ~~l~~~d~dg~~~-~~-lt~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANV-RY-LTDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCc-EE-EecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEEC
Confidence 4788898765433 23 457788999999999 9999887754 468999999876553 244456677889999
Q ss_pred cCCCcEEEEeCCCCc--EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-cCc--eEEEEeC
Q 013644 113 PGSPYIIYSCGEDGF--VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDE--YARVYDI 187 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~ 187 (439)
|+|+.++++.+.++. |++||+.+++..+... +........|+|++ +.++..+ .+| .|+++|+
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~------------~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD------------SPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceEEccC------------CCCccCceeEcCCC-CEEEEEECCCCCCeEEEEEC
Confidence 999987777776665 7777888776433221 22235568999998 4554444 443 6778887
Q ss_pred cCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C--CeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 188 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D--ELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
..++. ..+ ......+....|+|+|+.++... . ..|.+|++..+
T Consensus 322 ~g~~~---------------~~l-t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~----------------- 368 (435)
T PRK05137 322 DGSNP---------------RRI-SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS----------------- 368 (435)
T ss_pred CCCCe---------------EEe-ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-----------------
Confidence 65431 111 11234456688999999887763 2 36888887543
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCC------CeEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
..+.+... . .+.... |+|||+.|+..+.+ ..++++++..+.. ..+. ..+.+...+|+|-
T Consensus 369 ~~~~lt~~-~--~~~~p~-~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 369 GERILTSG-F--LVEGPT-WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEeccCC-C--CCCCCe-ECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 11222211 1 144556 89999988765442 3688888876544 3443 2345667788763
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.2e-14 Score=113.76 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=133.3
Q ss_pred ccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcceee-----------e--ecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 14 KGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFS-----------Y--LSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 14 ~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~-----------~--~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
+..|+|++|-|. +.-|+.|+.. -|.+|..+......+ + -.+| .+|++|+|.+ |+..+++++.
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~ 215 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASF 215 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeeccc
Confidence 467999999995 4678888874 599998753211110 1 1345 6899999999 9999999886
Q ss_pred -CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 80 -DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 80 -dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
|..|.|||..++..++.. ....+.+.-+.|+||+.+ |++++-|+..++|+............ ..+
T Consensus 216 gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw~l-----------gsg 281 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSPDGDV-LFAATCDAVFRLWQENQSWTKERWIL-----------GSG 281 (445)
T ss_pred CcceEEEEcCCCCCccccc--ccCCCceeeEEEcCCCCE-EEEecccceeeeehhcccceecceec-----------cCC
Confidence 678999999988877553 234577889999999985 55888999999996554332222222 345
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc------cccccc---ccCCCccEEEEEEccCCCE
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT------FCPRHL---IGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~i~~~~~~~~~~~ 229 (439)
.|...+|+|.|..+|++.+.... +|.+.....-........... ...... ...-.+.+.+++|.|.|.+
T Consensus 282 rvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence 79999999999777777765544 444332211111000000000 000001 0122678899999999999
Q ss_pred EEEec
Q 013644 230 LISYN 234 (439)
Q Consensus 230 l~~~~ 234 (439)
|++.-
T Consensus 360 Lav~f 364 (445)
T KOG2139|consen 360 LAVIF 364 (445)
T ss_pred EEEEE
Confidence 99874
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.1e-16 Score=131.35 Aligned_cols=229 Identities=10% Similarity=0.134 Sum_probs=179.2
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
.-+.+.|+. +|.+|+.|+..|.|..+|..+........ -...|..+.|..+.+ ++ +......+++||-. |..
T Consensus 131 GPY~~~ytr--nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---v~Etv~Dv~~LHneq-~~-AVAQK~y~yvYD~~-GtE 202 (545)
T KOG1272|consen 131 GPYHLDYTR--NGRHLLLGGRKGHLAAFDWVTKKLHFEIN---VMETVRDVTFLHNEQ-FF-AVAQKKYVYVYDNN-GTE 202 (545)
T ss_pred CCeeeeecC--CccEEEecCCccceeeeecccceeeeeee---hhhhhhhhhhhcchH-HH-HhhhhceEEEecCC-CcE
Confidence 346788888 99999999999999999998877654433 336788999988876 34 55677889999954 444
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
+..+. ....|..+.|-|.. .+|++++..|.++.-|+.+++.+..+ ....+.+
T Consensus 203 lHClk------------~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~---------------~t~~G~~ 254 (545)
T KOG1272|consen 203 LHCLK------------RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASI---------------RTGAGRT 254 (545)
T ss_pred Eeehh------------hcCchhhhcccchh-heeeecccCCceEEEeechhhhhHHH---------------HccCCcc
Confidence 44443 24568899999976 78889999999999999998864432 3346677
Q ss_pred EEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC
Q 013644 219 TGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 297 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg 297 (439)
..+.-+|-+..+-.|. .|+|.+|..... +++..+..|... |.+++ +.++|+|++|.+.|.
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~sk----------------ePLvKiLcH~g~--V~siA-v~~~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSK----------------EPLVKILCHRGP--VSSIA-VDRGGRYMATTGLDR 315 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCc----------------chHHHHHhcCCC--cceEE-ECCCCcEEeeccccc
Confidence 8888899888888885 999999998766 566777788876 99999 899999999999999
Q ss_pred eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 298 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 298 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
.++|||++....+.++.. .-+...+++|..| +| +++....|.||.
T Consensus 316 ~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lL-A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 316 KVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LL-ALSYGDHVQIWK 360 (545)
T ss_pred ceeEeeeccccccceeec-CCCcccccccccc-ce-eeecCCeeeeeh
Confidence 999999998876666554 3466788887665 33 344455899996
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=7.4e-13 Score=115.58 Aligned_cols=287 Identities=14% Similarity=0.159 Sum_probs=174.1
Q ss_pred CeEEEEeCCCCcceeeee--cCCcccEEEEEEeecCCCcEEEEecC----CCcEEEEEcccC--ceeeeEEecCCCCceE
Q 013644 36 KLVIFWDWKDRREKFSYL--SGHLDNIFQTRIMPFTDDRKIITSSA----DGQVRLGQIFED--GRMDTKRLGKHQGRVY 107 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iw~~~~~--~~~~~~~~~~~~~~v~ 107 (439)
+.|.+|+++......... .........++++| ++++|+++.. ++.|..|.+... ................
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 689999883332222111 12334556788999 9999988766 579999998764 3333333332445667
Q ss_pred EEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccC--CCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 108 KLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFS--ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 108 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
.++++|++++++++...+|.|.++++... ............ .............++.++|++..++++.-....|.+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 89999999988877788999999999874 333322211110 000001123346789999998444444444568999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKR 262 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (439)
|++...... +.. ............+.+.|+|+++++.+.. ++.|.++++..... ..
T Consensus 171 ~~~~~~~~~--------l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g------------~~ 228 (345)
T PF10282_consen 171 YDIDDDTGK--------LTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG------------SL 228 (345)
T ss_dssp EEE-TTS-T--------EEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT------------EE
T ss_pred EEEeCCCce--------EEE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC------------ce
Confidence 998764410 000 0111123456688999999999887764 88999999873211 11
Q ss_pred ccceeEeCC----CCcceeeeEEeeCCCCceEEEeC-CCCeEEEEecC--CCce--eEeecccccceEEEeecCCCcEEE
Q 013644 263 EEPQVYSGH----RNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK--GGKL--VRLMVGDRHVVNQLEPHPHIPMFA 333 (439)
Q Consensus 263 ~~~~~~~~~----~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~h~~~v~~~~~s~~~~~l~ 333 (439)
...+..... ........+. ++|||++|+++. ..+.|.+|++. ++++ +..+.......+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~-ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIA-ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEE-E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEE-EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 112222211 1111366777 899999987765 46789999983 3433 334433344578999999999888
Q ss_pred EEe-cCCeEEEeccC
Q 013644 334 TCG-IEKTVKLWAPM 347 (439)
Q Consensus 334 s~~-~dg~i~iw~~~ 347 (439)
++. .++.|.+|+++
T Consensus 308 Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 308 VANQDSNTVSVFDID 322 (345)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 776 56799999874
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.7e-14 Score=127.42 Aligned_cols=221 Identities=11% Similarity=0.021 Sum_probs=142.8
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeC--CCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG--EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..|.++|...... ..+..+...+.+.+|+|+|+.++++.. .+..|++||+.+++...... ...
T Consensus 182 ~~l~~~d~dg~~~---~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~------------~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANV---RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN------------FPG 246 (435)
T ss_pred eEEEEECCCCCCc---EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec------------CCC
Confidence 3788888754332 335567789999999999997665543 34689999998876543221 233
Q ss_pred eeEEEeecCCCCcEEEEeecCce--EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 234 (439)
.+....|+|++..++++.+.++. |++||+.+++... +..+........|+|+|+.++..+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----------------LTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----------------ccCCCCccCceeEcCCCCEEEEEECC
Confidence 46678999998555566666654 7777887654211 122334456789999999887664
Q ss_pred C--CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCce
Q 013644 235 D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL 309 (439)
Q Consensus 235 d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~ 309 (439)
+ ..|+++|+..+ ..+.+..... .+.... |+|+|++|+..+.+ ..|.+|++.++..
T Consensus 311 ~g~~~Iy~~d~~g~-----------------~~~~lt~~~~--~~~~~~-~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 311 SGSPQLYVMNADGS-----------------NPRRISFGGG--RYSTPV-WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred CCCCeEEEEECCCC-----------------CeEEeecCCC--cccCeE-ECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 2 36888887654 2223332222 244556 89999999876543 4688899865543
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecC------CeEEEeccCCCCCCCC
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPTDFPPL 354 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~ 354 (439)
..+.. ...+..+.|+|||++|+..+.+ ..+.++++.++....+
T Consensus 371 -~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 371 -RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred -EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 33332 2346778999999987765543 2577778776655433
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.9e-14 Score=128.59 Aligned_cols=221 Identities=10% Similarity=0.010 Sum_probs=140.5
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC--CCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE--DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..|.+||...... ..+..+...+.+.+|+|++++++++... +..|++||+.+++...... ...
T Consensus 184 ~~l~i~D~~g~~~---~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~------------~~g 248 (433)
T PRK04922 184 YALQVADSDGYNP---QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS------------FRG 248 (433)
T ss_pred EEEEEECCCCCCc---eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc------------CCC
Confidence 4688898854332 3355577789999999999976655433 3469999998876533221 122
Q ss_pred eeEEEeecCCCCcEEEEeecCc--eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 234 (439)
...+..|+|++..++++.+.+| .|++||+.+++... +..+........|+|+|+.|+..+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----------------lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----------------LTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------CccCCCCccceEECCCCCEEEEEECC
Confidence 2456899999855556666555 59999998765211 122233345689999999887664
Q ss_pred CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC---eEEEEecCCCce
Q 013644 235 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL 309 (439)
Q Consensus 235 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~ 309 (439)
++ .|+++++.++ ....+..... ...... |+|+|++|+..+.++ .|.+||+.+++.
T Consensus 313 ~g~~~iy~~dl~~g-----------------~~~~lt~~g~--~~~~~~-~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 313 GGRPQIYRVAASGG-----------------SAERLTFQGN--YNARAS-VSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCCceEEEEECCCC-----------------CeEEeecCCC--CccCEE-ECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 33 4666676554 1122222211 133456 899999998765432 699999988776
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecC---CeEEEeccCCCCCCCC
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL 354 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~ 354 (439)
. .+. +........|+|||++|+..+.+ +.|.++++.++....+
T Consensus 373 ~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 373 R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 5 333 22234567899999987776653 4677788866544434
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.3e-14 Score=125.14 Aligned_cols=217 Identities=11% Similarity=0.026 Sum_probs=131.6
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--CcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..|.++|... ... ..+..+...+.+.+|+|+++.++++...+ ..|.+||+.+++...... ...
T Consensus 176 ~~L~~~D~dG-~~~--~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~------------~~g 240 (427)
T PRK02889 176 YQLQISDADG-QNA--QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN------------FKG 240 (427)
T ss_pred cEEEEECCCC-CCc--eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec------------CCC
Confidence 3566666632 222 23445778899999999998766554333 459999999886543321 122
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeC--cCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDI--RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 234 (439)
...+..|+|++..++++.+.++...+|.+ ..+.. .. +..+........|+|+|+.++..+
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---------------~~-lt~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---------------RR-LTQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCc---------------EE-CCCCCCCCcCeEEcCCCCEEEEEecC
Confidence 35678999998555556777877666654 33221 11 122333455678999999877654
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC---eEEEEecCCCceeE
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVR 311 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~ 311 (439)
++...+|.+.... .....+..... ...... |+|+|++|+..+.++ .|.+||+.+++...
T Consensus 305 ~g~~~Iy~~~~~~---------------g~~~~lt~~g~--~~~~~~-~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 305 GGAPQIYRMPASG---------------GAAQRVTFTGS--YNTSPR-ISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CCCcEEEEEECCC---------------CceEEEecCCC--CcCceE-ECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 4555666543210 01112221111 123445 899999998776544 69999998887554
Q ss_pred eecccccceEEEeecCCCcEEEEEecCC---eEEEeccCC
Q 013644 312 LMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMP 348 (439)
Q Consensus 312 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 348 (439)
...+ .......|+|||++|+.++.++ .+.+.++.+
T Consensus 367 lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 367 LTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred ccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 3322 2346789999999888777554 344445543
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=3.2e-14 Score=112.26 Aligned_cols=155 Identities=13% Similarity=0.185 Sum_probs=107.3
Q ss_pred eEEEeecCCCCcEEEEeec---------CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEE
Q 013644 160 LNAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 230 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 230 (439)
-..+.|+|+|..+++.... -+...+|.++.... +. ..+.....++|..++|+|+|+.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--------~~-----~~i~l~~~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--------PV-----ESIELKKEGPIHDVAWSPNGNEF 74 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--------cc-----ceeeccCCCceEEEEECcCCCEE
Confidence 3457889988555554441 13455665543220 11 11112234569999999999876
Q ss_pred EEe--c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC---CCeEEEEec
Q 013644 231 ISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKK 304 (439)
Q Consensus 231 ~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~---dg~i~iwd~ 304 (439)
++. . +..+.+||++. +.+..+.. . .+..+. |+|+|++|++++. .|.|.+||.
T Consensus 75 avi~g~~~~~v~lyd~~~-----------------~~i~~~~~--~--~~n~i~-wsP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 75 AVIYGSMPAKVTLYDVKG-----------------KKIFSFGT--Q--PRNTIS-WSPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEEEccCCcccEEEcCcc-----------------cEeEeecC--C--CceEEE-ECCCCCEEEEEEccCCCcEEEEEEC
Confidence 554 2 67999999863 23344432 2 266777 8999999999864 477999999
Q ss_pred CCCceeEeecccccceEEEeecCCCcEEEEEec------CCeEEEeccCCCCC
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 351 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~ 351 (439)
++.+.+.... | ..++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 133 ~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 133 RKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 9888887765 3 35789999999999998874 78899999977655
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=1.9e-14 Score=122.19 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=148.4
Q ss_pred eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEE
Q 013644 106 VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 185 (439)
+....++-.|.++.+-.+. .+++|+.+.+.....-.......... ......+...-.|.+ .-++.|-..|.+.++
T Consensus 126 ~~~~~~~~~gd~lcFnvg~--~lyv~~~~g~~~~~~pi~k~~y~gt~--P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR--ELYVYSYRGAADLSKPIDKREYKGTS--PTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCC--eEEEEEccCcchhccchhhhcccCCC--CceecccccccCCCC-cceEEeeccCceEEe
Confidence 4445555566665555544 47778777432221111100000000 001112222223444 567788888999999
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEecCCeEEEEEccCCCCCCCCCCCccc-----
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLGPSPLSLSPED----- 258 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~----- 258 (439)
|....+......... .-.+..++++.|-|.+ .+|++-.+|.+++||..............-.
T Consensus 201 dp~~~~~sklfne~r-----------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 201 DPINFEVSKLFNEER-----------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQF 269 (636)
T ss_pred cchhhHHHHhhhhcc-----------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCee
Confidence 987633221111111 1234779999999865 4555556999999987543322222111110
Q ss_pred -------ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcE
Q 013644 259 -------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM 331 (439)
Q Consensus 259 -------~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 331 (439)
.....++..+.-- ...|...+ |+|||++||+.+.||.+||||..+.+++..++..-+...|++|||||+|
T Consensus 270 ~i~t~ksk~~rNPv~~w~~~--~g~in~f~-FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 270 AILTSKSKKTRNPVARWHIG--EGSINEFA-FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred EEeeeeccccCCccceeEec--ccccccee-EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE
Confidence 0001112222211 22477888 7999999999999999999999999999888877789999999999999
Q ss_pred EEEEecCCeEEEeccCCCCC-CCCCCchhhhhhh
Q 013644 332 FATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKA 364 (439)
Q Consensus 332 l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~ 364 (439)
|++|+.|--|.||.+..+++ ..-.+|..+|..+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V 380 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV 380 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence 99999999999999988876 5556777766443
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=1.1e-11 Score=108.20 Aligned_cols=280 Identities=11% Similarity=0.089 Sum_probs=170.8
Q ss_pred cceEEEEECCCCCEEEEecC----CCeEEEEeCCCC-cceee--eecCCcccEEEEEEeecCCCcEEEEecC-CCcEEEE
Q 013644 15 GCVNAVEFNSTGDFLVSGSD----DKLVIFWDWKDR-REKFS--YLSGHLDNIFQTRIMPFTDDRKIITSSA-DGQVRLG 86 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~----dg~i~iw~~~~~-~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw 86 (439)
....-++++|++++|.+... ++.|..|.+... ..+.. ...........++++| ++++|+++.. +|+|.++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~--~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP--DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT--TSSEEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec--CCCEEEEEEccCCeEEEE
Confidence 44567889999999888765 579999998765 22211 1111233456788999 9999988875 8999999
Q ss_pred EcccCceeeeE-Eec-----------CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc-eeeEEeeccCCCCCC
Q 013644 87 QIFEDGRMDTK-RLG-----------KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA-TRLFYCSSFSENSKQ 153 (439)
Q Consensus 87 ~~~~~~~~~~~-~~~-----------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~ 153 (439)
++.....+... ... .......++.++|++++++++.-....|.+|++..... +.........
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~----- 189 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP----- 189 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS-----
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc-----
Confidence 99875433221 111 12345678999999998777766677899999987652 2221211222
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc--CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEE
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 231 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 231 (439)
.......++|+|++...+++...++.|.+|++. .+.... .+.................++++|+|++|.
T Consensus 190 --~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 190 --PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE-------IQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp --TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE-------EEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred --cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE-------EEEeeeccccccccCCceeEEEecCCCEEE
Confidence 233468899999986666777778899999988 322100 000000000011123678899999999998
Q ss_pred Eec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-CCCeEEEEec--CC
Q 013644 232 SYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKK--KG 306 (439)
Q Consensus 232 ~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~ 306 (439)
++. .+.|.+|++.... ..+.....+.... ...+.+. ++|+|++|+++. .++.|.+|++ ++
T Consensus 261 vsnr~~~sI~vf~~d~~~------------g~l~~~~~~~~~G--~~Pr~~~-~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPAT------------GTLTLVQTVPTGG--KFPRHFA-FSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEECTTTEEEEEEECTTT------------TTEEEEEEEEESS--SSEEEEE-E-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEeccCCEEEEEEEecCC------------CceEEEEEEeCCC--CCccEEE-EeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 885 7899999984321 0112223333222 2267788 899999998776 4678999876 46
Q ss_pred CceeEeecc-cccceEEEee
Q 013644 307 GKLVRLMVG-DRHVVNQLEP 325 (439)
Q Consensus 307 ~~~~~~~~~-h~~~v~~~~~ 325 (439)
|.+...-.. .-....||.|
T Consensus 326 G~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 326 GKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TEEEEEEEEEESSSEEEEEE
T ss_pred CcEEEecccccCCCCEEEeC
Confidence 665443321 2234556655
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.2e-13 Score=115.86 Aligned_cols=272 Identities=12% Similarity=0.102 Sum_probs=176.1
Q ss_pred CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce
Q 013644 102 HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY 181 (439)
Q Consensus 102 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 181 (439)
+...-+.|..+|||+|++++|...-.|++||+........-.. ....|.-..++.+- ..++.-..|.+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-----------Dae~V~feiLsDD~-SK~v~L~~DR~ 117 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-----------DAEVVDFEILSDDY-SKSVFLQNDRT 117 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-----------cccceeEEEeccch-hhheEeecCce
Confidence 6677889999999999999999999999999987543221110 11123322333322 33334445666
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc-cCCCEEEEecCCeEEEEEccCCCCCCCCCCCccccc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
|.+...-..... ..-...-..++++ |...++++++...|+-+++..|
T Consensus 118 IefHak~G~hy~------------------~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-------------- 165 (703)
T KOG2321|consen 118 IEFHAKYGRHYR------------------TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-------------- 165 (703)
T ss_pred eeehhhcCeeee------------------eecCcCCccccccCCCccEEEeecCcceEEEEcccc--------------
Confidence 655433221100 0001122344554 4556777888889999999887
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec------cccc-----ceEEEeecCCC
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------GDRH-----VVNQLEPHPHI 329 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~-----~v~~~~~s~~~ 329 (439)
..+..+...... ++++. .++...+|++|+.+|.|.+||.++...+..+. .|.+ .|+++.|+.+|
T Consensus 166 --rfL~P~~~~~~~--lN~v~-in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g 240 (703)
T KOG2321|consen 166 --RFLNPFETDSGE--LNVVS-INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG 240 (703)
T ss_pred --cccccccccccc--ceeee-ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence 455555555444 77777 78889999999999999999998876655543 2333 49999999999
Q ss_pred cEEEEEecCCeEEEeccCCCCCCCCCCchh--hhhhhhccccCcceEEEeCCCcEEEEEEecccceeeeecccccccccC
Q 013644 330 PMFATCGIEKTVKLWAPMPTDFPPLPDNAE--KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFE 407 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~~~~~~~~~~~~~ 407 (439)
-.++.|..+|.+.|||+...++.....|.. ++..+.|...+....+.......+++|+-.+++.....++....-++.
T Consensus 241 L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C 320 (703)
T KOG2321|consen 241 LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFC 320 (703)
T ss_pred eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCcee
Confidence 999999999999999999888755554433 344444433333333333334679999999998877655555444444
Q ss_pred CccccceEEEeeeCCC
Q 013644 408 SDEEEGETYLLGFSDS 423 (439)
Q Consensus 408 ~~~~~~~~~~~~~~~~ 423 (439)
.-.+. ++|.++.++.
T Consensus 321 ~~p~s-Gm~f~Ane~~ 335 (703)
T KOG2321|consen 321 FVPGS-GMFFTANESS 335 (703)
T ss_pred eecCC-ceEEEecCCC
Confidence 44443 3555655543
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=1.2e-12 Score=118.50 Aligned_cols=233 Identities=13% Similarity=0.110 Sum_probs=144.2
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---CcEEEEEcccCceeeeEEecCCCCceEEEEEc
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVE 112 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~ 112 (439)
..|.++|..... ... +..+...+....|+| ++++|+.+... ..|.+|++.+++... +..+...+.+++|+
T Consensus 170 ~~l~~~d~~g~~-~~~-l~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGAN-PQT-ITRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCC-CEE-eecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEEC
Confidence 468888875443 233 345666789999999 99999887643 479999998765432 33345566779999
Q ss_pred cCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--eEEEEeCc
Q 013644 113 PGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIR 188 (439)
Q Consensus 113 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~ 188 (439)
|+++.++++.+.++ .|++||+.+++...... +........|+|++..++++....+ .|+++|+.
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEEECCC------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99997777766555 58888988765433221 1122345689998744444444444 57777776
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC---eEEEEEccCCCCCCCCCCCccccccccc
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE---LVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
+++.. .+..+........|+|+|++++... ++ .|.+||+.++ .
T Consensus 311 ~~~~~----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-----------------~ 357 (417)
T TIGR02800 311 GGEVR----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-----------------G 357 (417)
T ss_pred CCCEE----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-----------------C
Confidence 54311 1122234466788999999888775 43 7888888764 1
Q ss_pred ceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC---eEEEEecCCCceeEeecccccceEEEee
Q 013644 265 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 265 ~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
...+..... ..... |+|+|++|+..+.++ .+++.+.. ++....+..+.+.+..+.|
T Consensus 358 ~~~l~~~~~---~~~p~-~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 358 ERVLTDTGL---DESPS-FAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred eEEccCCCC---CCCce-ECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 122222111 22334 899999888776653 45555543 4445555444444555544
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=3e-13 Score=106.76 Aligned_cols=151 Identities=12% Similarity=0.216 Sum_probs=103.9
Q ss_pred EEEEECCCCCEEEEecC----------CCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEe--cCCCcEE
Q 013644 18 NAVEFNSTGDFLVSGSD----------DKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITS--SADGQVR 84 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~dg~i~ 84 (439)
-.+.|+|+|++|+.-.. -+...+|.++... ....+.....++|.+++|+| +++.|++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP--~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP--NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc--CCCEEEEEEccCCcccE
Confidence 35789999988775322 2346666664332 22222223456799999999 99887554 4577999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEe--CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSC--GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
+||++ .+.+ ..+ +...++.+.|+|+|++++++| ...|.|.+||+++.+.+.... ...+..
T Consensus 87 lyd~~-~~~i--~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-------------~~~~t~ 148 (194)
T PF08662_consen 87 LYDVK-GKKI--FSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-------------HSDATD 148 (194)
T ss_pred EEcCc-ccEe--Eee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-------------cCcEEE
Confidence 99996 3332 333 356788999999999655443 234779999999776665543 234789
Q ss_pred EeecCCCCcEEEEeec------CceEEEEeCcC
Q 013644 163 IVIDPRNPNYFAVGGS------DEYARVYDIRK 189 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~------dg~i~i~d~~~ 189 (439)
++|+|+| ++|+++.. |..++||+...
T Consensus 149 ~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 149 VEWSPDG-RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEcCCC-CEEEEEEeccceeccccEEEEEecC
Confidence 9999998 67777764 67889999864
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.2e-12 Score=117.93 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=144.6
Q ss_pred eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---CcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 37 LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 37 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
.|.++|...... . .+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++......+ .+.....+|+|
T Consensus 199 ~l~i~d~dG~~~-~-~l~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE-Q-MLLRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc-e-EeecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECC
Confidence 677778755433 2 2345677889999999 99998876542 3588889877665332222 23345789999
Q ss_pred CCCcEEEEeCCCCc--EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--eEEEEeCcC
Q 013644 114 GSPYIIYSCGEDGF--VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRK 189 (439)
Q Consensus 114 ~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~ 189 (439)
+|+.++++...++. |+++|+.+++...... +........|+|++..++++...++ .|.++|+.+
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITR------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECcc------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 99987777777775 7777887765433221 1223456789999855555554444 466667765
Q ss_pred CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CC--eEEEEEccCCCCCCCCCCCcccccccccc
Q 013644 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEP 265 (439)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
++... + ...........|+|+|++++..+ ++ .|.++|+.++. .
T Consensus 340 g~~~~---------------L-t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-----------------~ 386 (448)
T PRK04792 340 GKVSR---------------L-TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-----------------M 386 (448)
T ss_pred CCEEE---------------E-ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-----------------e
Confidence 54210 0 01111223468999998887764 33 56667766541 1
Q ss_pred eeEeCCCCcceeeeEEeeCCCCceEEEeCCC-C--eEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 266 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 266 ~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
..+..... ..... |+|+|+.|+..+.+ + .+++++. +|.....+..+.+.+...+|+|-
T Consensus 387 ~~lt~~~~---d~~ps-~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 387 QVLTSTRL---DESPS-VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEccCCCC---CCCce-ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 22221111 11224 89999988765543 3 4777776 46666667666667788888873
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.4e-13 Score=109.61 Aligned_cols=258 Identities=12% Similarity=0.075 Sum_probs=173.1
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeE----EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK----RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
....+..++|.-......|...+.+..+....+......... .......+|..++... + .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g--~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G--TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C--EEEEEecCCcEEEE
Confidence 345678888875223334555556767777776655443221 3344556777776543 3 46688999999999
Q ss_pred EccCCCc----eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC--ceEEEEeCcCCcccCCCCCCCCcccc
Q 013644 132 DLRSDSA----TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTF 205 (439)
Q Consensus 132 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~ 205 (439)
..+.+.. ...+.. ...+..+.-++..+.++++|+.. ..+.+||+...+.
T Consensus 131 ~~k~~d~hss~l~~la~------------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q------------- 185 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLAT------------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ------------- 185 (412)
T ss_pred eccCCccccccceeeec------------CCceeeeccCCCCCceEecCchhcccceeeeeccccee-------------
Confidence 9985431 111211 23466666677777788889988 7899999886431
Q ss_pred cccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC
Q 013644 206 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 285 (439)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 285 (439)
+|...+. +...-+-..+..++.+. |-+
T Consensus 186 ----------------------------------iw~aKNv------------------pnD~L~LrVPvW~tdi~-Fl~ 212 (412)
T KOG3881|consen 186 ----------------------------------IWSAKNV------------------PNDRLGLRVPVWITDIR-FLE 212 (412)
T ss_pred ----------------------------------eeeccCC------------------CCccccceeeeeeccce-ecC
Confidence 1211110 00111111222356666 444
Q ss_pred C--CceEEEeCCCCeEEEEecCCC-ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC--CCCCchhh
Q 013644 286 N--DEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEK 360 (439)
Q Consensus 286 ~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~ 360 (439)
. ...||+++.-+.+++||.+.+ +++..+.--..+|+++...|.++++++|..-|.+..+|+..+++. .+.+-.+.
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 4 678999999999999998876 567788777789999999999999999999999999999988762 24555555
Q ss_pred hhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 361 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 361 ~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+..+. .++....+++++-|..++|+|+++++.+.
T Consensus 293 irsih-~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 293 IRSIH-CHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cceEE-EcCCCceEEeeccceeEEEeecccchhhh
Confidence 54443 34455689999999999999999976554
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=8.1e-11 Score=96.11 Aligned_cols=289 Identities=12% Similarity=0.217 Sum_probs=181.3
Q ss_pred CCeEEEEeCCCCcce--eeeecCCcccEEEEEEeecCCCcEEEEecC---CCcEEEEEccc--CceeeeEEecCCCCceE
Q 013644 35 DKLVIFWDWKDRREK--FSYLSGHLDNIFQTRIMPFTDDRKIITSSA---DGQVRLGQIFE--DGRMDTKRLGKHQGRVY 107 (439)
Q Consensus 35 dg~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~v~ 107 (439)
+.-|.+|++.+.... ...+..+.+..+-|+|+| +.+.|.++-. +|.|..|.+.. +.............+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 467999999744321 112235677889999999 9989988755 47788888764 33322222222223448
Q ss_pred EEEEccCCCcEEEEeCCCCcEEEEEccC-CCceeeEEeeccCCCCCC-CCceeeeEEEeecCCCCcEEEEee-cCceEEE
Q 013644 108 KLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSATRLFYCSSFSENSKQ-PMNSIRLNAIVIDPRNPNYFAVGG-SDEYARV 184 (439)
Q Consensus 108 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i 184 (439)
.+++++++++++.+...-|.|.++-++. +............+.... .....-+....+.|++ +++++.. ..-.|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEE
Confidence 8999999998777777789999999976 333322222221111110 0011226778899998 5666654 3347999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKR 262 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (439)
|++..+++... .+.. -......+.|.|+|+++++.... +++|.+|........ +..+
T Consensus 172 y~~~dg~L~~~----------~~~~--v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~---------~~~l 230 (346)
T COG2706 172 YDLDDGKLTPA----------DPAE--VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK---------FEEL 230 (346)
T ss_pred EEcccCccccc----------cccc--cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce---------EEEe
Confidence 99997664211 1111 13456678899999999887775 999999998764111 1111
Q ss_pred cc----ceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEEecCC--Cce--eEeecccccceEEEeecCCCcEEE
Q 013644 263 EE----PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GKL--VRLMVGDRHVVNQLEPHPHIPMFA 333 (439)
Q Consensus 263 ~~----~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~~h~~~v~~~~~s~~~~~l~ 333 (439)
+. +..+.+.. ....+. +++||++|.++.. ...|.+|.+.. +++ +.....+....+...++|.+++|+
T Consensus 231 Q~i~tlP~dF~g~~---~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 231 QTIDTLPEDFTGTN---WAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred eeeccCccccCCCC---ceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 11 11222222 355666 8999999988765 34788887653 322 222223444578899999999988
Q ss_pred EEecC-CeEEEeccC--CCCC
Q 013644 334 TCGIE-KTVKLWAPM--PTDF 351 (439)
Q Consensus 334 s~~~d-g~i~iw~~~--~~~~ 351 (439)
++..+ ..|.+|..+ ++++
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 307 AANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEccCCCcEEEEEEcCCCceE
Confidence 88765 478888764 4444
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=2.5e-12 Score=116.49 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=135.3
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--CcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..|.++|...... ..+..+...+...+|+|++++++++...+ ..|++||+.+++...... +..
T Consensus 170 ~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~------------~~~ 234 (417)
T TIGR02800 170 YELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS------------FPG 234 (417)
T ss_pred ceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec------------CCC
Confidence 3577777743332 33445666788999999999766554333 579999998876543321 123
Q ss_pred eeEEEeecCCCCcEEEEeecCc--eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 234 (439)
.+.+++|+|++..++++.+.++ .|++||+.+++.... ..+........|+|+|+.|+..+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l----------------~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL----------------TNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC----------------CCCCCCCCCEEECCCCCEEEEEECC
Confidence 3556899999855555555544 588888876542110 11222334568999998776553
Q ss_pred CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC---eEEEEecCCCce
Q 013644 235 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL 309 (439)
Q Consensus 235 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~ 309 (439)
.+ .|+++++.++ ....+..+.. ...... |+|+|++++.++.++ .|.+||+.++..
T Consensus 299 ~g~~~iy~~d~~~~-----------------~~~~l~~~~~--~~~~~~-~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 299 GGSPQIYMMDADGG-----------------EVRRLTFRGG--YNASPS-WSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCceEEEEECCCC-----------------CEEEeecCCC--CccCeE-ECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 23 6777887654 1222322222 245556 899999998887765 889999887654
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecCC---eEEEeccCCCC
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTD 350 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~ 350 (439)
.. +... .......|+|++++|+..+.++ .+.+.+..+..
T Consensus 359 ~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 359 RV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred EE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 32 3222 2234568999999888777654 45555554433
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.7e-11 Score=105.26 Aligned_cols=318 Identities=13% Similarity=0.151 Sum_probs=199.4
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEe-----cC-----CCcEE
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITS-----SA-----DGQVR 84 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-----~~-----dg~i~ 84 (439)
.+.+..+++++|+++|.+. +..++|++..+...+.... - ..++++.|+| -+.+|.+= .. .-.++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~--~-~~~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE--L-KKTYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec--c-ceeeeeeecc--cccccccccccccccCCCCCCCcee
Confidence 3467889999999999875 4689999998886444432 2 2789999999 88888762 11 24577
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+|+++++........ ..... ++..|++|.. +++--..+.+++|++...+.+..-. |...++.+.
T Consensus 109 v~~vet~~~~s~~q~-k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl------------~~~~i~~f~ 172 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQK-KMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKL------------SVSGITMLS 172 (566)
T ss_pred eeeeccceehhheeh-hhhcC-cccccccchh--hhhhhhcceEEEEecCCccceeeee------------eccceeeEE
Confidence 999988433322112 22222 6899999985 3344456789999988744332211 455688899
Q ss_pred ecCCCCc-EEEE-----eecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE-EE--Eec-
Q 013644 165 IDPRNPN-YFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LI--SYN- 234 (439)
Q Consensus 165 ~~~~~~~-~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~--~~~- 234 (439)
++|.... .+|+ .+.-+.++||.......-.. ...+.+ ....-..+.|++-|.- |+ +..
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~---------~a~ksF---Fkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP---------VANKSF---FKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccch---------hhhccc---cccceeEEEeccCCceEEEEEEEee
Confidence 9986333 3333 34556899998873221110 011111 1223345778877742 22 221
Q ss_pred CC---------eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE--EeCCCCeEEEEe
Q 013644 235 DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM--SGSDCGHLFIWK 303 (439)
Q Consensus 235 d~---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~--~~~~dg~i~iwd 303 (439)
|. .+++++++.. . ..+.... ..+|.++. |+|+++-++ .|-.-..+.|||
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~----------------s--~~V~L~k-~GPVhdv~-W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGE----------------S--VSVPLLK-EGPVHDVT-WSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred cCCCccccccceEEEEEecCc----------------e--EEEecCC-CCCceEEE-ECCCCCEEEEEEecccceEEEEc
Confidence 33 6777777622 1 2222221 12499999 899997554 455577899999
Q ss_pred cCCCceeEeecccccceEEEeecCCCcEEEEEecC---CeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCC-
Q 013644 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP- 379 (439)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 379 (439)
++ +.++..+. .++=+++-|+|.|++|+.+|-+ |.|-|||+.+.+...-..... .....|++++.++++++-
T Consensus 301 lr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 301 LR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence 87 66666653 5677889999999999988865 789999998866532221111 122335666666654432
Q ss_pred -----CcEEEEEEeccc
Q 013644 380 -----DVIMHVLRLQRR 391 (439)
Q Consensus 380 -----dg~v~~w~~~~~ 391 (439)
|..+++|+....
T Consensus 376 PRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccEEecCCeEEEEecCc
Confidence 678999997655
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=3.9e-12 Score=108.86 Aligned_cols=297 Identities=10% Similarity=0.118 Sum_probs=177.4
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-----------CCcEEEE
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-----------DGQVRLG 86 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----------dg~i~iw 86 (439)
+-+.|||.|.||+|--..| |.+|--.+-..+.++ .|. .|.-+.||| +.+||++-+. ...++||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCC--ccceEEEecCCccccCcccCCCceEEEE
Confidence 5689999999999987755 899987666666665 454 588899999 9999998654 2579999
Q ss_pred EcccCceeeeEEecCCCCceE-EEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 87 QIFEDGRMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
|+.++.....+........++ -+.||.|+++ +|--.. ..|.||+.....+... ... .-..|....|
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~~-~sisIyEtpsf~lld~---Ksl--------ki~gIr~Fsw 354 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMTG-NSISIYETPSFMLLDK---KSL--------KISGIRDFSW 354 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCce-eEEecc-ceEEEEecCceeeecc---ccc--------CCccccCccc
Confidence 999987764433322223333 4679999985 544433 5688887665322111 000 2233666667
Q ss_pred cCCCCcEEEEeecC-----ceEEEEeCcCCcccCCCC--------------------------C---CCCccccccccc-
Q 013644 166 DPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPIS--------------------------S---DTPVDTFCPRHL- 210 (439)
Q Consensus 166 ~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~--------------------------~---~~~~~~~~~~~~- 210 (439)
+|.+ ++||--... ..+.+..+.+++.+.... . ......+..-.+
T Consensus 355 sP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 355 SPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred CCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 7754 555533211 122333333222221100 0 000000000000
Q ss_pred -------ccCCCccEEEEEEccCCCEEEEec----CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeee
Q 013644 211 -------IGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 279 (439)
Q Consensus 211 -------~~~~~~~i~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (439)
.-.-...|...+|-|.|..+++-+ ..++.+|.+.+.. .....+..+... ..+.
T Consensus 434 eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~------------~~~~lVk~~dk~----~~N~ 497 (698)
T KOG2314|consen 434 EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI------------KKPSLVKELDKK----FANT 497 (698)
T ss_pred ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC------------Cchhhhhhhccc----ccce
Confidence 011244577889999997665542 4578888887421 111233333331 2555
Q ss_pred EEeeCCCCceEEEe---CCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEec------CCeEEEeccCCCC
Q 013644 280 VNFFGPNDEYVMSG---SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTD 350 (439)
Q Consensus 280 ~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 350 (439)
+. |+|.|++++.+ +..|.+.++|+.-..+...-.......+.+.|.|.|+|++|++. |..-+||++.+..
T Consensus 498 vf-wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 498 VF-WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EE-EcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 65 89999999776 45789999998754443332222345688999999999999885 4556788877654
Q ss_pred C
Q 013644 351 F 351 (439)
Q Consensus 351 ~ 351 (439)
+
T Consensus 577 l 577 (698)
T KOG2314|consen 577 L 577 (698)
T ss_pred H
Confidence 3
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=2e-13 Score=125.02 Aligned_cols=280 Identities=15% Similarity=0.143 Sum_probs=178.4
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEE---EEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIF---QTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
-+++++.++-. +||+.|.. ..|.+||+.++..+..+...+...+. ...-. .+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l---~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL---LSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhccccccccccccee---ccceEEEEEeecceeecchhh
Confidence 34555555543 67776643 57999999887644332211111111 00000 334555555444433322111
Q ss_pred CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
.......+.|....+..+.+ .++.+..+..+.+||...+.....+....... -....-+.++++ .
T Consensus 81 ------~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------l~~~~~~g~s~~-~ 145 (967)
T KOG0974|consen 81 ------QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------LYSSLIIGDSAE-E 145 (967)
T ss_pred ------hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEE-------EEeEEEEeccCc-E
Confidence 11112233444455555555 46677778889999988776554443211100 000111122332 2
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 250 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 250 (439)
-++++|+.-+.|.+|+... .
T Consensus 146 ~~i~~gsv~~~iivW~~~~--------------------------------------------------------d---- 165 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE--------------------------------------------------------D---- 165 (967)
T ss_pred EEEEeccccccEEEEeccc--------------------------------------------------------c----
Confidence 4555555555555555441 1
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE-eecccccceEEEeecCCC
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~ 329 (439)
+....+.+|.+. +.++. ++-||+++++.++|.++++|++.+.+... ..-+|...|..+.|+|+
T Consensus 166 ------------n~p~~l~GHeG~--iF~i~-~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 166 ------------NKPIRLKGHEGS--IFSIV-TSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ------------CCcceecccCCc--eEEEE-EccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 122257788776 88888 79999999999999999999999988776 66689999999999998
Q ss_pred cEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 330 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
.++|++.|.+.++|+.+...+..+.+|...-+.....+......+++..||.+++|++..+
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999998888877777787776666556777789999999999999998655
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.5e-12 Score=114.86 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=146.4
Q ss_pred eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---CcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 37 LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 37 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
.|.++|.+.... .. +..+...+....|+| +++.|+..+.+ ..|.+|++.+++... +....+.+....|+|
T Consensus 180 ~l~~~d~~g~~~-~~-l~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VT-LLQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eE-EecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECC
Confidence 477788765543 33 345677889999999 99999876543 468899998775533 333334455789999
Q ss_pred CCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--eEEEEeCcC
Q 013644 114 GSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRK 189 (439)
Q Consensus 114 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~ 189 (439)
+|+.++++...++ .|++||+.+++...... +........|+|++..++++...++ .|+++++.+
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEccc------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9997776776665 58888998876443221 1222455789999855555554444 577777766
Q ss_pred CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CC--eEEEEEccCCCCCCCCCCCcccccccccc
Q 013644 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEP 265 (439)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
++... + ...........|+|+|+.++... ++ .|.++|+.++. .
T Consensus 321 g~~~~---------------l-t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-----------------~ 367 (430)
T PRK00178 321 GRAER---------------V-TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS-----------------V 367 (430)
T ss_pred CCEEE---------------e-ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC-----------------E
Confidence 54211 0 00111233568999999887764 33 58888887651 1
Q ss_pred eeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 266 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 266 ~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
..+..... ..... |+|+|++++..+.+ ..|.++++. +.....+..+.+.+...+|+|-
T Consensus 368 ~~lt~~~~---~~~p~-~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 368 RILTDTSL---DESPS-VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEccCCCC---CCCce-ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 22221111 11234 89999998776543 357777775 4444455555566777888774
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=1.2e-10 Score=98.92 Aligned_cols=274 Identities=14% Similarity=0.078 Sum_probs=163.3
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC----------CCcEEEEEcccCceeeeEEecCC---
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA----------DGQVRLGQIFEDGRMDTKRLGKH--- 102 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~~--- 102 (439)
++|.+.|..+.+.+..+-.+..... + ++| |++.|+.+.. +..|.+||..+.+......+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 8999999999876666544443332 4 898 9998877655 78999999998887644333211
Q ss_pred --CCceEEEEEccCCCcEEEEeCC-CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC
Q 013644 103 --QGRVYKLAVEPGSPYIIYSCGE-DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 103 --~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
......++++|+|++++++--. +..|.+.|+.+++.+..+.... ...-...++.. ++ +-+.|
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------------~~~vy~t~e~~-~~--~~~~D 166 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------------CYHIFPTANDT-FF--MHCRD 166 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------------CcEEEEecCCc-cE--EEeec
Confidence 1233478999999976655534 8999999999999887775421 01111121111 11 22233
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEecCCeEEEEEccCCCCCCCCCCCccc
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPED 258 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 258 (439)
|......+........ ...++ +..... .-...+ .|.+ +|+++..+..|.|.+.|+........
T Consensus 167 g~~~~v~~d~~g~~~~--~~~~v--f~~~~~-~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~------- 230 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKI--KPTEV--FHPEDE-YLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL------- 230 (352)
T ss_pred CceEEEEecCCCceEE--eeeee--ecCCcc-ccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceec-------
Confidence 4333322222110000 00000 000000 000111 3455 88888888779999999755421100
Q ss_pred ccccccceeEeC-----CCCcceeeeEEeeCCCCceEEEeC----------CCCeEEEEecCCCceeEeecccccceEEE
Q 013644 259 LQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGDRHVVNQL 323 (439)
Q Consensus 259 ~~~~~~~~~~~~-----~~~~~~v~~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 323 (439)
.....+.. .-.+..+.-++ ++++++.++... ..+.|.++|..+++.+..+.. ...+..+
T Consensus 231 ----~~~~~~~~~~~~~~wrP~g~q~ia-~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~i 304 (352)
T TIGR02658 231 ----PAIEAFTEAEKADGWRPGGWQQVA-YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSI 304 (352)
T ss_pred ----ceeeeccccccccccCCCcceeEE-EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeE
Confidence 11111110 11111233366 899998887742 225899999999999988764 3578899
Q ss_pred eecCCCc-EEEEEe-cCCeEEEeccCCCCC
Q 013644 324 EPHPHIP-MFATCG-IEKTVKLWAPMPTDF 351 (439)
Q Consensus 324 ~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~ 351 (439)
+++||++ +|++.. .++.|.+.|..+++.
T Consensus 305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999 777665 678899999988765
No 251
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.53 E-value=1e-10 Score=98.55 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=132.6
Q ss_pred cCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe-ecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 113 PGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV-IDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
.||+.+++. .-|.|.+||..+.+....-.........+++....+..-+. |++.++.+++..+. |...+.+...+-
T Consensus 276 sDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 355555443 34668899888776544332212211111111111111122 44445578887775 556665544322
Q ss_pred ccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC-eEEEEEccCCCCCCCCCCCcccccccccceeEe
Q 013644 192 WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS 269 (439)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (439)
. +.-++...|.-..+..+++-++.+. || .+-+||..++ ..+.+.
T Consensus 353 ~-----------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----------------e~kr~e 398 (668)
T COG4946 353 S-----------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----------------EVKRIE 398 (668)
T ss_pred e-----------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----------------eEEEee
Confidence 1 1134556677777777776666665 66 9999999886 334444
Q ss_pred CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCC----eEEEec
Q 013644 270 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK----TVKLWA 345 (439)
Q Consensus 270 ~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg----~i~iw~ 345 (439)
..-+. |.++. .+++|++++.+.....|.+.|+.+++....-+...+-|+.+.|||+++++|-+--+| .|+++|
T Consensus 399 ~~lg~--I~av~-vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 399 KDLGN--IEAVK-VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred CCccc--eEEEE-EcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 44443 88888 899999999999999999999999988766666668899999999999999887665 789999
Q ss_pred cCCCCC
Q 013644 346 PMPTDF 351 (439)
Q Consensus 346 ~~~~~~ 351 (439)
+.+++.
T Consensus 476 m~~~Ki 481 (668)
T COG4946 476 MDGGKI 481 (668)
T ss_pred cCCCeE
Confidence 998775
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=3.8e-11 Score=101.92 Aligned_cols=282 Identities=12% Similarity=0.129 Sum_probs=180.0
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC------------
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD------------ 80 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------------ 80 (439)
-.-++..++|||.|.+|++.... .|.+|.......+.++ .| ..|..+.|+| ++.+|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSP--NEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCc--ccceeeeeccCCccChhhccCCc
Confidence 45678899999999999987764 5999998877655544 23 5789999999 99999986543
Q ss_pred ---CcEEEEEcccCceeeeEEecC----------------------------C---------------CCceEEEEEccC
Q 013644 81 ---GQVRLGQIFEDGRMDTKRLGK----------------------------H---------------QGRVYKLAVEPG 114 (439)
Q Consensus 81 ---g~i~iw~~~~~~~~~~~~~~~----------------------------~---------------~~~v~~i~~~~~ 114 (439)
..+.+||+.++..+....... | ...|....|+|.
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence 359999998765443211111 1 134555566665
Q ss_pred CCc-EEEE-----eCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee----------c
Q 013644 115 SPY-IIYS-----CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------S 178 (439)
Q Consensus 115 ~~~-~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~ 178 (439)
+++ .|+. .+..+.+++|.+..+..+....... ..=..+.|++.|..+++-.- .
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-----------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-----------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-----------ecccEEEEecCCceEEEEEEEeeecccceec
Confidence 332 1111 3456667777776555544433322 12234667776633333221 1
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec---CCeEEEEEccCCCCCCCCCCC
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~ 255 (439)
...+++++++.... +.. ..-.++|...+|.|.++.+++.+ ...+.++|++..
T Consensus 254 esnLyl~~~~e~~i--------------~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--------- 308 (561)
T COG5354 254 ESNLYLLRITERSI--------------PVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--------- 308 (561)
T ss_pred cceEEEEeeccccc--------------cee--ccccccceeeeecccCCceeEEecccccceeecccccc---------
Confidence 23577777774331 111 13478899999999987665543 778999998764
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCceeE-eecccccceEEEeecCCCcE
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPM 331 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~ 331 (439)
..+...... -..+. |+|.+++++.++-| |.|-+|+......+. .+.+. ..+-+.|+||+++
T Consensus 309 ----------l~~~~Pe~~--rNT~~-fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF 373 (561)
T COG5354 309 ----------LRFYFPEQK--RNTIF-FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQF 373 (561)
T ss_pred ----------eEEecCCcc--ccccc-ccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceE
Confidence 222222221 23344 89999999987665 789999987654433 56544 3355789999998
Q ss_pred EEEEe------cCCeEEEeccCCCCC
Q 013644 332 FATCG------IEKTVKLWAPMPTDF 351 (439)
Q Consensus 332 l~s~~------~dg~i~iw~~~~~~~ 351 (439)
+.+.. .|..|.||++.+...
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEecCCCcccccCcceEEEEecCchh
Confidence 77664 378899999977654
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.5e-11 Score=111.42 Aligned_cols=220 Identities=12% Similarity=0.015 Sum_probs=133.7
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--CcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
.|.++|...... ..+..+...+....|+|+|++++++...+ ..|.+||+.+++...... ....
T Consensus 180 ~l~~~d~~g~~~---~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARA---VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------FEGL 244 (430)
T ss_pred EEEEECCCCCCc---eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC------------CCCC
Confidence 466777754332 33445677889999999999766665443 368899998876543221 1122
Q ss_pred eEEEeecCCCCcEEEEeecCc--eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C
Q 013644 160 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D 235 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d 235 (439)
.....|+|++..++++...+| .|++||+.+++... +..+........|+|+|+.++..+ +
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----------------VTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----------------cccCCCCcCCeEECCCCCEEEEEECCC
Confidence 446889999854555555555 68888988765211 112233345678999998776554 3
Q ss_pred C--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC-C--eEEEEecCCCcee
Q 013644 236 E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKLV 310 (439)
Q Consensus 236 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~ 310 (439)
+ .|+++++.++. ...+..... ...... |+|+|++|+..+.+ + .|.+||+.+++..
T Consensus 309 g~~~iy~~d~~~g~-----------------~~~lt~~~~--~~~~~~-~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 309 GKPQIYKVNVNGGR-----------------AERVTFVGN--YNARPR-LSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCceEEEEECCCCC-----------------EEEeecCCC--CccceE-ECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 3 57777776551 111111111 122334 89999999876543 3 5888999887653
Q ss_pred EeecccccceEEEeecCCCcEEEEEecC---CeEEEeccCCCCCCCC
Q 013644 311 RLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL 354 (439)
Q Consensus 311 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~ 354 (439)
..... .......|+|+|++++..+.+ ..|.++++.++....+
T Consensus 369 ~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 369 ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 32222 222356899999988776644 3466777755443333
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.5e-11 Score=111.02 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=132.1
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
.|.++|...... ..+..+...+.+..|+|+|+.++++...++ .|++||+.+++....... ...
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~------------~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF------------PGI 263 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC------------CCC
Confidence 566667644332 234456678899999999997666654444 588889888764332211 112
Q ss_pred eEEEeecCCCCcEEEEeecCce--EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D 235 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d 235 (439)
.....|+|++..++++...++. |+++|+.+++... +..+........|+|+|+.++..+ +
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----------------lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR----------------ITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE----------------CccCCCCccceEECCCCCEEEEEECCC
Confidence 3467899998555556666664 7777887654211 122233456778999998877654 3
Q ss_pred C--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CC--eEEEEecCCCcee
Q 013644 236 E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLV 310 (439)
Q Consensus 236 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~ 310 (439)
+ .|+++|+.++ ....+...... ..... |+|+|++|+..+. ++ .|.++|+.+++..
T Consensus 328 g~~~Iy~~dl~~g-----------------~~~~Lt~~g~~--~~~~~-~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 328 GKPQIYRVNLASG-----------------KVSRLTFEGEQ--NLGGS-ITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCceEEEEECCCC-----------------CEEEEecCCCC--CcCee-ECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 3 5666777654 11222211111 22345 8999999877654 33 5666788877653
Q ss_pred EeecccccceEEEeecCCCcEEEEEecC-C--eEEEeccCCCCCCCCC
Q 013644 311 RLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLP 355 (439)
Q Consensus 311 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g--~i~iw~~~~~~~~~~~ 355 (439)
. +... .......|+|+|++|+..+.+ | .+.+++.+++....+.
T Consensus 388 ~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 388 V-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred E-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 3 3222 122345799999987765543 3 3667777655444443
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.1e-10 Score=93.79 Aligned_cols=285 Identities=13% Similarity=0.141 Sum_probs=176.4
Q ss_pred ccccceEEEEECCCCCEEEEecC---CCeEEEEeCCCCcceeeee---cCCcccEEEEEEeecCCCcEEEEecC-CCcEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSD---DKLVIFWDWKDRREKFSYL---SGHLDNIFQTRIMPFTDDRKIITSSA-DGQVR 84 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~ 84 (439)
.+.+.++-|+|+|++++|.++-. +|.|..|.++......+++ .....+-..+++++ ++++++++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence 35677888999999999988754 5788888877531111211 11122337789998 9999998876 58999
Q ss_pred EEEcccCcee-eeEEecCCCCc----------eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 85 LGQIFEDGRM-DTKRLGKHQGR----------VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 85 iw~~~~~~~~-~~~~~~~~~~~----------v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
++-++....+ .......|.+. +....+.|+++++++..-.--.|.+|++..++....-... ..
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~----- 188 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VK----- 188 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cC-----
Confidence 9999664332 22233345554 8889999999976665555567999999977654433221 12
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
....-..|.|+|++.-..++.--+++|.+|...... ..+. .++.......-.........|.++++|++|.++
T Consensus 189 --~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~---~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 189 --PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFE---ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred --CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEE---EeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 233467899999885445555678999999988731 0000 001100000012235567789999999999999
Q ss_pred c--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC-CeEEEEec--CCCc
Q 013644 234 N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-GHLFIWKK--KGGK 308 (439)
Q Consensus 234 ~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-g~i~iwd~--~~~~ 308 (439)
+ ...|.+|.+..... .+........+.. ..+... ++++|++|+++..+ ..|.+|.. ++|+
T Consensus 262 NRg~dsI~~f~V~~~~g------------~L~~~~~~~teg~--~PR~F~-i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 262 NRGHDSIAVFSVDPDGG------------KLELVGITPTEGQ--FPRDFN-INPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred cCCCCeEEEEEEcCCCC------------EEEEEEEeccCCc--CCccce-eCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 6 55788887764311 0111122222222 256666 78999999888775 46778764 4565
Q ss_pred eeEeec-ccccceEEEeec
Q 013644 309 LVRLMV-GDRHVVNQLEPH 326 (439)
Q Consensus 309 ~~~~~~-~h~~~v~~~~~s 326 (439)
+-.... .......||.|.
T Consensus 327 L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 327 LTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEecccccCCCCcEEEEEc
Confidence 544333 223344566653
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.6e-13 Score=116.13 Aligned_cols=288 Identities=16% Similarity=0.189 Sum_probs=183.2
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-------ceeeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-------EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
+..|.||+..|.+++--.+.+-+++++.|.+|++|.++... +.. ....|+.+|.++.|.. +.+++++ .
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQf-TY~aHkk~i~~igfL~--~lr~i~S--c 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQF-TYQAHKKPIHDIGFLA--DLRSIAS--C 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeee-EhhhccCcccceeeee--ccceeee--c
Confidence 35688999999999888788889999999999999986532 222 3478999999999998 7777766 4
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccC-CCcEEEEe-CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG-SPYIIYSC-GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
||-|.+||.--++.+.........+.+..+...|+ .+.++.++ +...+|+++|.+..+....+.....+. ..
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~------Pn 876 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG------PN 876 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC------Cc
Confidence 78999999876655432222222233444444443 33445444 788999999999998877776553332 23
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 236 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~ 236 (439)
.-+.+++..+.| +.++++-.+|.|.+.|.++++.+.....-. -....++ .|..+.|+... |.
T Consensus 877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpme---------------cdllqla-apsdq~L~~saldH 939 (1034)
T KOG4190|consen 877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPME---------------CDLLQLA-APSDQALAQSALDH 939 (1034)
T ss_pred hheeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCccc---------------chhhhhc-CchhHHHHhhcccc
Confidence 458899999987 899999999999999999998655432110 0111111 23444555543 77
Q ss_pred eEEE-EEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC----CceeE
Q 013644 237 LVYL-FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVR 311 (439)
Q Consensus 237 ~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~ 311 (439)
.+.+ |....+. ..+.....+.+.. |...-|..+++....+.+.+|.-.. ...+.
T Consensus 940 slaVnWhaldgi------------------mh~q~kpppepah---flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stit 998 (1034)
T KOG4190|consen 940 SLAVNWHALDGI------------------MHLQDKPPPEPAH---FLQSVGPSLVTAQNGNILGVYADSAELHAESTIT 998 (1034)
T ss_pred eeEeeehhcCCe------------------eeeccCCCCcchh---hhhccCceeEEeccCcEEEEEecchhhhhhhhhc
Confidence 7776 6554331 1111111110111 1223455666766666777775211 11111
Q ss_pred eec--ccccceEEEeecCCCcEEEEEecCCeEEE
Q 013644 312 LMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 312 ~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
.++ ...+..++++.-|-+.-+..|...|.|.+
T Consensus 999 KiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 999 KIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cccccccCCccceeeeccccchhhccCCCCceee
Confidence 222 12356788888887777778888888875
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=4.8e-12 Score=101.94 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=170.2
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce---eeeEEecCCC------------CceEEEEEccCCCc-EE
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR---MDTKRLGKHQ------------GRVYKLAVEPGSPY-II 119 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~------------~~v~~i~~~~~~~~-~l 119 (439)
....|.++.|.. .|.+|++|..+|.|.++.-..... .....++.|. ..|+.+.|.++++. .+
T Consensus 24 eadiis~vef~~--~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDH--YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeec--ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 346789999998 999999999999999986543221 1112233332 46889999887653 45
Q ss_pred EEeCCCCcEEEEEccCCCcee---------------eEEeeccCCC----------CCCCCceeeeEEEeecCCCCcEEE
Q 013644 120 YSCGEDGFVQHFDLRSDSATR---------------LFYCSSFSEN----------SKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
+..+.|.+|++|-+....... .+......+. .-...|.--|+++.++.+. ..++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEe
Confidence 577889999999887543222 1111110000 0113577789999999986 4555
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEE-EEecCCeEEEEEccCCCCCCCC
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELL-ISYNDELVYLFEKNMGLGPSPL 252 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l-~~~~d~~i~i~d~~~~~~~~~~ 252 (439)
++ .|-.|.+|.+.-....-.+. ...| .....-..-|++..|+|.. .++ .+++.|.|++.|++...-....
T Consensus 181 SA-DdLRINLWnlei~d~sFnIV------DIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQSFNIV------DIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred ec-cceeeeeccccccCCceeEE------Eccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 44 56789999987532100000 0000 0001113347888899875 333 4445999999999854211100
Q ss_pred CCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec-CCCceeEeecccc------------cc
Q 013644 253 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGKLVRLMVGDR------------HV 319 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~------------~~ 319 (439)
.--.+.........-+..... .|..+. |+++|+|+++-.. -+|++||+ ...+++.+++-|. ..
T Consensus 253 sKlfEepedp~~rsffseiIs--SISDvK-Fs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIIS--SISDVK-FSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhhccccCCcchhhHHHHhh--hhhceE-EccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 000000000001111111112 377788 8999999998765 68999998 4456666665543 12
Q ss_pred e---EEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 320 V---NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 320 v---~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
| ..++|+-++.+++||+....++++++..+..
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 2 4578998899999999999999999765543
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=1.2e-11 Score=113.79 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=122.5
Q ss_pred EEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe
Q 013644 20 VEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL 99 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 99 (439)
+.++++.-++++|+.-+.|.+|+........ .+.+|.+.|.++.|+- +|.++++.+.|.++++|++.+.+... ...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~ 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLG-CTG 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEcc--CCcEEEEEecCcceeeeecccccccC-ccc
Confidence 3456677789999999999999988444333 4689999999999998 99999999999999999999877664 345
Q ss_pred cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC
Q 013644 100 GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 100 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
.+|+..|+.+.|+|. .+++++.|-+.++|+....+.. .+..+ ....+..++..+.. .+.++++.|
T Consensus 215 fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~-~y~~h----------~g~~iw~~~~~~~~-~~~vT~g~D 279 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE-VYDEH----------SGKGIWKIAVPIGV-IIKVTGGND 279 (967)
T ss_pred ccccceeEEEEeccc---eeEEeccceEEEEEecccceeh-hhhhh----------hhcceeEEEEcCCc-eEEEeeccC
Confidence 689999999999998 4779999999999966543332 33222 13347888888865 899999999
Q ss_pred ceEEEEeCcCC
Q 013644 180 EYARVYDIRKC 190 (439)
Q Consensus 180 g~i~i~d~~~~ 190 (439)
+.+++|++...
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999998654
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=1.2e-12 Score=115.67 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=189.0
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCc--ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL--DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
.+.+.++..+|.|+-+|.++.-| +.+-|+.........+ .|. -.|-.+.|+|.+.-.+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46788999999999999999876 5566776654444433 232 2466778887544445444444555668988643
Q ss_pred c-eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 92 G-RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 92 ~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
. ......+.+|...|+.+.|+|+.+-++++++.|..+..||++........... -......+.|+..++
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~----------w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS----------WRSAASQVKWNYKDP 171 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec----------ccccCceeeecccCc
Confidence 2 22235678999999999999999999999999999999999986543222111 123456788988776
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC--CCEEEEecCCeEEEEEccCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYNDELVYLFEKNMGLG 248 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~d~~i~i~d~~~~~~ 248 (439)
+.+|+ +....|.+||.+.+. .+...+++|...|+.+.|+.- ++++.+..|++|+.||......
T Consensus 172 ~vlas-shg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 172 NVLAS-SHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred chhhh-ccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 66655 455689999999876 444455678888888888753 4555566799999999876521
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc--eEEEeC---------CCCeEEEEecCC-CceeEeeccc
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGS---------DCGHLFIWKKKG-GKLVRLMVGD 316 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~--~l~~~~---------~dg~i~iwd~~~-~~~~~~~~~h 316 (439)
.. ..... ... .+..-+ +-|-|+ ++.--- -++....|+..+ .+++..|.||
T Consensus 237 e~--------------~~~vt-t~~--piw~~r-~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 237 ES--------------KRTVT-TNF--PIWRGR-YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH 298 (1081)
T ss_pred cc--------------ceecc-ccC--cceecc-ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence 10 01111 000 122222 223222 111111 122223344333 3678999999
Q ss_pred ccceEEEeecCCCc----------EEEEEecCCeEEEeccCC
Q 013644 317 RHVVNQLEPHPHIP----------MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 317 ~~~v~~~~~s~~~~----------~l~s~~~dg~i~iw~~~~ 348 (439)
...|....|-..+. .|+|-+.|..+++|-+..
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99988877744222 599999999999998753
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.3e-10 Score=104.03 Aligned_cols=242 Identities=12% Similarity=0.105 Sum_probs=140.8
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcE--E-EEecCC--CcEEEEEcccCceeeeEEecCCCCceEEEE
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRK--I-ITSSAD--GQVRLGQIFEDGRMDTKRLGKHQGRVYKLA 110 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--l-~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~ 110 (439)
..|.+.|.+..... . +.........-+|+| ||+. + ++...+ ..|.+.++.+++...... ..+.....+
T Consensus 165 ~~l~~~d~dG~~~~-~-lt~~~~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~---~~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNLR-P-LTQEHSLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA---LQGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCce-E-cccCCCCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceEeec---CCCCccceE
Confidence 46777777655432 2 334555677889999 9875 2 233333 357777887665543333 334455689
Q ss_pred EccCCCcEEEEeCCCC----cEEEEEccCCC--ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 111 VEPGSPYIIYSCGEDG----FVQHFDLRSDS--ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 111 ~~~~~~~~l~s~~~dg----~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
|+|||++++++...+| .+..|++..+. ....+... ........+|+|+|..++++...+|...+
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----------~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----------AFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----------CCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 9999998777665433 34446766531 11222110 01123567999998545555555665555
Q ss_pred Ee--CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec----CCeEEEEEccCCCCCCCCCCCccc
Q 013644 185 YD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPED 258 (439)
Q Consensus 185 ~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~ 258 (439)
|. +..... .. ..+......+....|+|+|+.|+... ...|.+||+.++.
T Consensus 308 y~~~~~~~g~-------------~~-~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------- 362 (428)
T PRK01029 308 YIMQIDPEGQ-------------SP-RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------- 362 (428)
T ss_pred EEEECccccc-------------ce-EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-----------
Confidence 54 332110 00 11122234567789999999887653 2479999988762
Q ss_pred ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC---CCeEEEEecCCCceeEeecccccceEEEeecCCC
Q 013644 259 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 329 (439)
...+..... .+.... |+|||++|+..+. ...|+++++.+++...... ..+.+...+|+|..
T Consensus 363 ------~~~Lt~~~~--~~~~p~-wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 ------DYQLTTSPE--NKESPS-WAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred ------eEEccCCCC--CccceE-ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 222322211 245566 8999998875432 3578899998776654443 34556778888753
No 261
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-12 Score=103.30 Aligned_cols=270 Identities=16% Similarity=0.236 Sum_probs=172.9
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ce---eeeecCCc------------ccEEEEEEeecCCCcEEEEe
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EK---FSYLSGHL------------DNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~---~~~~~~h~------------~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+.|+++.|...|.||++|...|.|.++.-.... +. .+.+++|. ..|..+.|...+.-..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999865433 11 11234443 46888888863344567777
Q ss_pred cCCCcEEEEEcccCceee----------------------------------------eE-EecCCCCceEEEEEccCCC
Q 013644 78 SADGQVRLGQIFEDGRMD----------------------------------------TK-RLGKHQGRVYKLAVEPGSP 116 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~----------------------------------------~~-~~~~~~~~v~~i~~~~~~~ 116 (439)
+.|.+|++|.+....... .+ .-..|.-.|+++.|..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999886431000 00 0134777789999999887
Q ss_pred cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCC
Q 013644 117 YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI 196 (439)
Q Consensus 117 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 196 (439)
. + ....|-.|.+|++........+. ...+.. ...-..-|++..|+|...+.+...+..|.|++-|++...+....
T Consensus 186 t-~-lSaDdLrINLWnl~i~D~sFnIV--DiKP~n-meeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 T-L-LSADDLRINLWNLEIIDGSFNIV--DIKPHN-MEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred e-e-eeccceeeeeccccccCCceEEE--eccCcc-HHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 4 4 34567889999987544322221 111100 00012347889999998889999999999999999954321100
Q ss_pred CC-C-CCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-
Q 013644 197 SS-D-TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN- 273 (439)
Q Consensus 197 ~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (439)
.. . ..... .....+.+-...|..+.|+++|+++++-.--++++||.+....+ +.+..-|..
T Consensus 261 ~klfe~~~D~-v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~p---------------ikTi~~h~~l 324 (460)
T COG5170 261 KKLFELTIDG-VDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNP---------------IKTIPMHCDL 324 (460)
T ss_pred hhhhhhccCc-ccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCC---------------ceeechHHHH
Confidence 00 0 00000 00112233456788999999999999999999999999876432 222221110
Q ss_pred ---------cce---eeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 274 ---------SQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 274 ---------~~~---v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
... -..+. ||.+.+.+.+|+..+..-+|-..
T Consensus 325 ~~~l~d~YEnDaifdkFeis-fSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 325 MDELNDVYENDAIFDKFEIS-FSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHHhhhhccceeeeEEEE-ecCCcccccccccccceeeeccc
Confidence 000 12344 78888999999988888887643
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=5.2e-11 Score=106.61 Aligned_cols=227 Identities=8% Similarity=0.033 Sum_probs=131.7
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCc--EEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY--IIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
.|.+.|...... ..+........+-+|+|||+. ++++...+| .|.+.++.+++..+.... .
T Consensus 166 ~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~------------~ 230 (428)
T PRK01029 166 ELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL------------Q 230 (428)
T ss_pred eEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC------------C
Confidence 566666644333 234445566778899999976 333554444 577888887765443321 2
Q ss_pred eeeEEEeecCCCCcEEEEeecCc----eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
.......|+|+|..++++...+| .+..|++..+... .+..+............|+|||+.|+..
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 22446789999855555543333 3444666543100 0111111222234567999999977765
Q ss_pred c--CCeEEEE--EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCC
Q 013644 234 N--DELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKG 306 (439)
Q Consensus 234 ~--d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 306 (439)
+ ++...+| ++.... .....+..... .+.... |||||+.|+..+.+ ..|.+||+.+
T Consensus 299 s~~~g~~~ly~~~~~~~g---------------~~~~~lt~~~~--~~~~p~-wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 299 SNKDGRPRIYIMQIDPEG---------------QSPRLLTKKYR--NSSCPA-WSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred ECCCCCceEEEEECcccc---------------cceEEeccCCC--Ccccee-ECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 4 5544444 443210 11233333322 245556 89999988866543 4799999998
Q ss_pred CceeEeecccccceEEEeecCCCcEEEEEec---CCeEEEeccCCCCCCCC
Q 013644 307 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPL 354 (439)
Q Consensus 307 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~ 354 (439)
++...... ....+....|+|||++|+.... ...|.+|++.+++...+
T Consensus 361 g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 361 GRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 87654333 2345678999999998765433 35688888877665333
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.8e-11 Score=107.06 Aligned_cols=306 Identities=13% Similarity=0.158 Sum_probs=195.8
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc--------------ceeeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR--------------EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
.....|+.|+....++|.|+.||.++|-.+.+.. .+-+.+.+|++.|.-+.|.. +.+.|-+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NNQKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--ccccccccCC
Confidence 3568899999999999999999999999875432 12234689999999999998 8889999999
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
+|-|.+|-+-.+.......-......|.+++|+.+|.. ++....||.|.+=.+..+..-.. .. ....
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgK----eL--------kg~~ 158 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGK----EL--------KGQL 158 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecch----hc--------chhe
Confidence 99999999987765443333445678999999999985 56778888887766554321110 00 1122
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEE-EEccCCCEEEEecCCeE
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL-AYSNTSELLISYNDELV 238 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~d~~i 238 (439)
...+.|+++. ..++.+-..|.+.+||....-..+ + . ....|+.- .++.-+..++
T Consensus 159 l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~K-l---------------~-~~c~Vn~tg~~s~~~~kia------- 213 (1189)
T KOG2041|consen 159 LAHVLWSEDL-EQALFKKANGETHLYDNQGNFERK-L---------------E-KDCEVNGTGIFSNFPTKIA------- 213 (1189)
T ss_pred ccceeecccH-HHHHhhhcCCcEEEecccccHHHh-h---------------h-hceEEeeeeeecCCCcccc-------
Confidence 4578899987 677778888999999976432100 0 0 00001100 0111110000
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
.+.-+.+.... ..|+...|+.+-.+|.+.+-.-.+......+. -.-
T Consensus 214 -------------------------~i~w~~g~~~~--------v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm 259 (1189)
T KOG2041|consen 214 -------------------------EIEWNTGPYQP--------VPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGM 259 (1189)
T ss_pred -------------------------ceeeccCcccc--------CCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-ccc
Confidence 01111111111 45788889999999999887654433322332 225
Q ss_pred ceEEEeecCCCcEEEEEecC---------CeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 319 VVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
.|....|+++|..||.+|.+ +.|.++.+-+.-...+......+....|.+ ..+-++...|+.+.+=+++
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg--~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEG--TGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcC--CceEEEEEecceEEEEeec
Confidence 78899999999999999865 367788776655555554444555554433 2344555556676666665
Q ss_pred ccceee
Q 013644 390 RRQTLA 395 (439)
Q Consensus 390 ~~~~~~ 395 (439)
..-...
T Consensus 338 P~ykWg 343 (1189)
T KOG2041|consen 338 PEYKWG 343 (1189)
T ss_pred ccceEE
Confidence 554443
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=6e-11 Score=93.71 Aligned_cols=164 Identities=19% Similarity=0.270 Sum_probs=120.0
Q ss_pred cceEEEEECC---CCC-EEEEecCCCeEEEEeCCCCcceeeeecCC---c---ccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 15 GCVNAVEFNS---TGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGH---L---DNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 15 ~~I~~~~~s~---~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h---~---~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
..+..+.|.. +|. .++-+..+|.|.++..........+ .+- . ....++.|++ .+..++++..+|.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSIS 146 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeec--cCceEEEEcCCCcEE
Confidence 4566666653 455 4566677889999876554332221 111 1 1245778888 888899999999998
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+-+.........+.++.|.-+.+...|+...+.++++|+.|+.+..||++..+ ...+.. ...|...|.++.
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n--------~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHN--------SKVHTSGVVSIY 217 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeec--------ceeeecceEEEe
Confidence 66654444444457889999999999999888899999999999999999443 222221 112777899999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCC
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKC 190 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~ 190 (439)
-+|..+.++++|+.|-.|++||.++.
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcc
Confidence 99888899999999999999999964
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.3e-11 Score=106.60 Aligned_cols=190 Identities=11% Similarity=0.120 Sum_probs=142.5
Q ss_pred cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee------cC-------------CCCcEEEEee
Q 013644 117 YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI------DP-------------RNPNYFAVGG 177 (439)
Q Consensus 117 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~-------------~~~~~l~~~~ 177 (439)
.++|....||.+++|+...++....+...... .+...+..| +| .+...++-|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~--------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASL--------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhc--------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 36888899999999999998776655432211 111222222 22 1235788899
Q ss_pred cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCc
Q 013644 178 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 256 (439)
..|.|.+|+...++.... .....|.+.|.++.++.+-..|.+++ |..+..|+....
T Consensus 78 ~~g~v~~ys~~~g~it~~-------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------- 134 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAK-------------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------- 134 (541)
T ss_pred CCccEEEEEecCCeEEEE-------------EecCCCCCcceeeecccccCceEecCCceeEEEEecccc----------
Confidence 999999999998874221 22267889999999998888888776 999999998776
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCC-----CcE
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-----IPM 331 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~ 331 (439)
...+.+...... +.+++ ++|||..+++++ ++|++||+++++.+..|.||.++|+++.|..+ |.+
T Consensus 135 ------~~~~~~~~~~~~--~~sl~-is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 135 ------VIIRIWKEQKPL--VSSLC-ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred ------eeeeeeccCCCc--cceEE-EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 455566655554 78888 899999999988 68999999999999999999999999999876 555
Q ss_pred -EEEEecCCeEEEeccCC
Q 013644 332 -FATCGIEKTVKLWAPMP 348 (439)
Q Consensus 332 -l~s~~~dg~i~iw~~~~ 348 (439)
|.++..+.-+.+|-+..
T Consensus 204 vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeccccccceeEEEEEc
Confidence 44555566788887644
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.4e-11 Score=107.39 Aligned_cols=374 Identities=13% Similarity=0.079 Sum_probs=218.4
Q ss_pred cccceeeeeeccccceEEEEECCCC------------CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecC
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTG------------DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~------------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 69 (439)
++++.++.+..|+..|+.+.|.|-. -+||++...|.|.+||...+..+.. +..|..++..++|.|..
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-LSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-hcCCCcchhheeeeecc
Confidence 4678889999999999999998731 2577888889999999988866555 57889999999999864
Q ss_pred CC--cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC----ceeeEE
Q 013644 70 DD--RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS----ATRLFY 143 (439)
Q Consensus 70 ~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~ 143 (439)
+. ..|++-....++.+|+..+++.... .........|+.+.|-...-+..-+..|.+.+-+.-..+ ..+.+.
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 33 3566667778999999998887643 333345667789988655555556666776666543211 111111
Q ss_pred eecc-CC-----------C--CCCCCcee---eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 144 CSSF-SE-----------N--SKQPMNSI---RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 144 ~~~~-~~-----------~--~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
.... .. . ...+.... ....++|+|.-.+.++.. ....+.++|++-...+...
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vv---------- 268 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVV---------- 268 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEE----------
Confidence 1100 00 0 00000000 022456788765555544 4567899998865533221
Q ss_pred ccccccCCCccEEEEEEccCC--CEEEEec-CCeEEEEEccCCCCCCCCC---------------------------CCc
Q 013644 207 PRHLIGKNNIHITGLAYSNTS--ELLISYN-DELVYLFEKNMGLGPSPLS---------------------------LSP 256 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~---------------------------~~~ 256 (439)
.-..+.+.-+.+-|++ ..|.+.. +|.+.+|--+......... ..|
T Consensus 269 -----pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP 343 (1062)
T KOG1912|consen 269 -----PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP 343 (1062)
T ss_pred -----EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC
Confidence 1123334445555554 4566664 8888887654321111000 000
Q ss_pred c-c----------------ccc-------------------------------cccceeEeCCCCcceeeeE--------
Q 013644 257 E-D----------------LQK-------------------------------REEPQVYSGHRNSQTVKGV-------- 280 (439)
Q Consensus 257 ~-~----------------~~~-------------------------------~~~~~~~~~~~~~~~v~~~-------- 280 (439)
. + +.. +..+..-.+|..+.....+
T Consensus 344 s~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 344 STPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred CChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccce
Confidence 0 0 000 0000000011111110000
Q ss_pred EeeCCCC-------ceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEe----------cCCeEEE
Q 013644 281 NFFGPND-------EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG----------IEKTVKL 343 (439)
Q Consensus 281 ~~~s~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~i 343 (439)
.--.|.+ .++|.|+..|+|.++|+.++...+.+..|...|.++.|.-...++ +.+ .-+.+.+
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv-Sfsys~~n~~sg~vrN~l~v 502 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV-SFSYSHVNSASGGVRNDLVV 502 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE-EeeeccccccccceeeeEEE
Confidence 0011222 367889999999999999999999999999999999997655443 332 2245677
Q ss_pred eccCCCCCCCCC---CchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 344 WAPMPTDFPPLP---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 344 w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
-++.+|.-+.++ +.....+.....+.-..+++..-.|--+.+|++++-..++
T Consensus 503 tdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 503 TDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred EEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 788887654444 3333333333334445566666667778888886655443
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=8.7e-10 Score=98.32 Aligned_cols=310 Identities=10% Similarity=0.041 Sum_probs=174.2
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCC
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQG 104 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 104 (439)
.+..+++++.+|.|..+|..+++.+.+.. -. ..+..- ... ++..++.++.++.+..+|..+++......+. .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~-~~~~~~-p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-LD-ERLSGG-VGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---S 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-CC-CCcccc-eEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---c
Confidence 35678888889999999999987665432 11 122111 112 6778888889999999999888776433322 2
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
.+.+.-...++ .++.++.++.|+.||.++++.+........... ... ..+.... + ..++.+..++.+..
T Consensus 136 ~~~~~p~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-----~~~-~~sp~~~--~-~~v~~~~~~g~v~a 204 (377)
T TIGR03300 136 EVLSPPLVANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-----LRG-SASPVIA--D-GGVLVGFAGGKLVA 204 (377)
T ss_pred eeecCCEEECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-----ecC-CCCCEEE--C-CEEEEECCCCEEEE
Confidence 22211111233 355777899999999999987665543210000 000 0011111 2 36777888899999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEE-EEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
+|.++++.+.......+......... ..+. ...+ .++.++++..++.++.||..++.
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~-----~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~---------------- 262 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERL-----VDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGR---------------- 262 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhh-----hccCCccEE-ECCEEEEEEcCCEEEEEECCCCc----------------
Confidence 99998875432211110000000000 0000 0111 24455555569999999998762
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-cceEEEeecCCCcEEEEEecCCeEE
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVK 342 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~ 342 (439)
..-.... .. .... ...+..++.++.+|.+..+|..+++.+....... ........ .+..|++++.+|.|.
T Consensus 263 ~~W~~~~-~~---~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 263 VLWKRDA-SS---YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred EEEeecc-CC---ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence 2111111 01 1111 1246778888899999999999998876553211 12222222 356888899999999
Q ss_pred EeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEE
Q 013644 343 LWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 343 iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w 386 (439)
+++..+++. ..++.+...+.... .. .+..++..+.||.|..|
T Consensus 334 ~~d~~tG~~~~~~~~~~~~~~~sp-~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 334 WLSREDGSFVARLKTDGSGIASPP-VV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEECCCCCEEEEEEcCCCccccCC-EE-ECCEEEEEeCCceEEEe
Confidence 999988775 22222221121111 11 22357777788888765
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.9e-11 Score=98.60 Aligned_cols=255 Identities=17% Similarity=0.273 Sum_probs=172.4
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
...+++|.+.+++....| ...-+++.+.|.+++||--++..+...........+++++.+.++.. .|+.|-..|++.
T Consensus 17 l~~~eG~~d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt 93 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT 93 (404)
T ss_pred hhhhcCchhhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence 344679999999999988 88889999999999999765544332222333557889999999886 677898899998
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
-+.+...-....+. .....|..++..+.|+-.. ..+++.+.|..+.---.+.+..+..+....+.
T Consensus 94 efs~sedfnkm~~~-------r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~------- 158 (404)
T KOG1409|consen 94 EFALSEDFNKMTFL-------KDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPA------- 158 (404)
T ss_pred EEEhhhhhhhcchh-------hhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccC-------
Confidence 88665422111111 1112278889999998754 78888888877665555554433221110000
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
+.+.+.-. +...|. .+.+.+..+... ....+..+.+|... +.++. |.+..+
T Consensus 159 ---------t~~~~d~~--~~fvGd~~gqvt~lr~~~~--------------~~~~i~~~~~h~~~--~~~l~-Wd~~~~ 210 (404)
T KOG1409|consen 159 ---------SALQFDAL--YAFVGDHSGQITMLKLEQN--------------GCQLITTFNGHTGE--VTCLK-WDPGQR 210 (404)
T ss_pred ---------CCCceeeE--EEEecccccceEEEEEeec--------------CCceEEEEcCcccc--eEEEE-EcCCCc
Confidence 00000000 122222 344333333211 12466778888876 88888 799999
Q ss_pred eEEEeCCCCeEEEEecCCCc-eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 289 YVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
.|++|..|..+.+||+.-.+ ....+.+|...|..+..-+--+.|.+++.||.|.+|+++..+
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 99999999999999987554 346778999999999988888899999999999999986543
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2.2e-10 Score=99.17 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=147.3
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCCcceeeeec--CCcccEEEEEEe------ec------------CCCcEEEEecCCCc
Q 013644 23 NSTGDFLVSGSDDKLVIFWDWKDRREKFSYLS--GHLDNIFQTRIM------PF------------TDDRKIITSSADGQ 82 (439)
Q Consensus 23 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~~------~~------------~~~~~l~s~~~dg~ 82 (439)
.|-+.++|....||.+|+|+...++....+.. .-.+..++..|. |. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34568999999999999999988765444321 112333344443 21 14457788888999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
|.+|++..++......-..|.+.|+++.++.+-. +|++++.|+.+..|+....+..+.+.+. ...+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~-----------~~~~~s 149 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQ-----------KPLVSS 149 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccC-----------CCccce
Confidence 9999998887766555678999999999988776 7999999999999999999888888764 334889
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-----CCEEEEec--C
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-----SELLISYN--D 235 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~--d 235 (439)
++++|++ .++++++ +.|++||+.+++. ...+.+|.++|+++.|... |.++.++. +
T Consensus 150 l~is~D~-~~l~~as--~~ik~~~~~~kev---------------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 150 LCISPDG-KILLTAS--RQIKVLDIETKEV---------------VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred EEEcCCC-CEEEecc--ceEEEEEccCceE---------------EEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 9999996 7888876 5899999999764 2334899999999999876 66666653 6
Q ss_pred CeEEEEEccC
Q 013644 236 ELVYLFEKNM 245 (439)
Q Consensus 236 ~~i~i~d~~~ 245 (439)
..+.+|-...
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 6777787654
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=3.2e-09 Score=90.48 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=153.4
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecC----------CCeEEEEeCCCCcceeeeecCC------cccEEEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSD----------DKLVIFWDWKDRREKFSYLSGH------LDNIFQTRIM 66 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~h------~~~v~~~~~~ 66 (439)
+.+.+.++..-..+- .+ ++|||+.|+++.. +..|.+||..+.+.+..+..+- ...-..++++
T Consensus 36 ~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 345555555433322 24 9999998887655 6899999999998776653221 1223468899
Q ss_pred ecCCCcEEEEec-C-CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 67 PFTDDRKIITSS-A-DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 67 ~~~~~~~l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
| +|++|+... . +..|.+.|+.+++.+...... +...-+..+++.. + +-+.||......+........-..
T Consensus 114 ~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp---~~~~vy~t~e~~~--~-~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 114 P--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP---DCYHIFPTANDTF--F-MHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred C--CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC---CCcEEEEecCCcc--E-EEeecCceEEEEecCCCceEEeee
Confidence 9 999998765 3 789999999888776433321 1222222222221 1 223344444433332221111110
Q ss_pred eccCCCCCCCCceeeeEEEeecC-CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc-ccCCCccEEEEE
Q 013644 145 SSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLA 222 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 222 (439)
.-+.. ...+....+ .|.+ ++ .++++..+ |.|.+.|+......... +...+..... ..-....+..++
T Consensus 186 ~vf~~-~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~----~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 186 EVFHP-EDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLP----AIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred eeecC-CccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceecc----eeeeccccccccccCCCcceeEE
Confidence 00000 000001111 3455 55 66666665 99999997654321100 0000000000 011233444599
Q ss_pred EccCCCEEEEec-----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eE
Q 013644 223 YSNTSELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YV 290 (439)
Q Consensus 223 ~~~~~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l 290 (439)
++++++.+.+.. .+.|.++|..+. +....+.... .+..++ ++||++ +|
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----------------kvi~~i~vG~---~~~~ia-vS~Dgkp~l 314 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----------------KRLRKIELGH---EIDSIN-VSQDAKPLL 314 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----------------eEEEEEeCCC---ceeeEE-ECCCCCeEE
Confidence 999998777631 258999998876 4444444322 378888 899999 77
Q ss_pred EEeC-CCCeEEEEecCCCceeEeec
Q 013644 291 MSGS-DCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 291 ~~~~-~dg~i~iwd~~~~~~~~~~~ 314 (439)
++.. .++.|.++|..+++.+..+.
T Consensus 315 yvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEEeeec
Confidence 7666 57889999999999988873
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=2.1e-11 Score=96.18 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=141.7
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
.++.|++.+..++++-.+|.+.+-+..... +..+..+.|.-+++...|+.. +.+++.+|+.|+.+..||++..+....
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCcceee
Confidence 467788888889998888988855543332 222356899999999999873 567899999999999999985443333
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV 175 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 175 (439)
...+.|...|.+|.-+|..++.+++|+.|..|++||.+.. +++..-. ..+.|..+..+|.....++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~------------v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK------------VGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc------------cccceEEEEecchhhhHHHH
Confidence 3356689999999999988888999999999999999953 3332221 24679999999975444444
Q ss_pred eecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEE-EEEccCC
Q 013644 176 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVY-LFEKNMG 246 (439)
Q Consensus 176 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~-i~d~~~~ 246 (439)
+..-.-.+|-+....... . .........|.+-...-.|.....++++++ |+.++ +|-.-++
T Consensus 272 ~CMh~G~ki~~~~~~~~e--------~--~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLE--------F--QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHhcCceEEEecccccc--------h--heeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 444445677776654311 0 011122245666666666655556788875 77755 7755443
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.2e-09 Score=97.95 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=119.7
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecC----------CCcEEEEecCCCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT----------DDRKIITSSADGQ 82 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~~~l~s~~~dg~ 82 (439)
|...-.++.|+|.| +||.|+. ..|.+-|..+-+.+.. +.-|...|+.+.|.|.+ ..-.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs-ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS-IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc-cccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34446788999988 6788876 5788889888766655 47899999999999842 1235677778899
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEcc---CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP---GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
|.+||....... ..+..|.+++..++|-+ +.+++|++-....+|.+|+..+|+....... ....
T Consensus 91 Iil~d~~~~s~~--~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-----------s~~i 157 (1062)
T KOG1912|consen 91 IILVDFVLASVI--NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-----------SHEI 157 (1062)
T ss_pred EEEEEehhhhhh--hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-----------CCcc
Confidence 999999876665 34778889999999876 3446777878889999999999987655443 2334
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCc
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIR 188 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 188 (439)
..|+.+.|-+.+.+..-+..|.+.+-+.-
T Consensus 158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred eeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 67788888877777777777777766543
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.37 E-value=1.3e-09 Score=107.70 Aligned_cols=283 Identities=10% Similarity=0.028 Sum_probs=162.5
Q ss_pred EEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecC------------CCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 61 FQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGK------------HQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 61 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
..+++.+. ++.++++-..++.|++||... .......-.+ .-.....+++.+++..++++-...+.|
T Consensus 571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECC-CCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35677651 355667777788999999853 3321111101 112357899999887556566667889
Q ss_pred EEEEccCCCceeeEEeec-----cCCCCCCC-CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCc
Q 013644 129 QHFDLRSDSATRLFYCSS-----FSENSKQP-MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 202 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 202 (439)
+.+|+.++.. ..+.... ........ ..-..-..++++|+++.++++...++.|++||..++....... ....
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G-~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG-DGYE 726 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec-CCcc
Confidence 9999877643 2222110 00000000 0011235789999665788888888999999987764321100 0000
Q ss_pred ccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC------Cc
Q 013644 203 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR------NS 274 (439)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 274 (439)
............-.....++++|++..|+++ . ++.|++||+.++.........+ .. ......+.... ..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~--~~-~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP--TF-SDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc--cc-CcccccccCCCCchhhhhc
Confidence 0000000000112345679999999855544 3 7899999987652100000000 00 00000000000 00
Q ss_pred ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec-------------ccccceEEEeecCCCcEEEEEecCCeE
Q 013644 275 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-------------GDRHVVNQLEPHPHIPMFATCGIEKTV 341 (439)
Q Consensus 275 ~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~s~~~~~l~s~~~dg~i 341 (439)
....+++ ++++|+++++-+.+++|++||..++....... +.-.....|+++++|+++++-+.++.|
T Consensus 804 ~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 804 QHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred cCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 1245677 78999999999999999999998776543221 111356789999999999998999999
Q ss_pred EEeccCCCCC
Q 013644 342 KLWAPMPTDF 351 (439)
Q Consensus 342 ~iw~~~~~~~ 351 (439)
++|++.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999987654
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.34 E-value=4.1e-11 Score=92.96 Aligned_cols=169 Identities=13% Similarity=0.120 Sum_probs=110.5
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee-eecCCcccEEEEEEeecCCCcEEEEecC-----
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS-YLSGHLDNIFQTRIMPFTDDRKIITSSA----- 79 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~----- 79 (439)
.++.+.-|+++=.+-+.+-.+..++++..||.+.+++.+....+.. +...|.+. .+.++.. .++.+.++..
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~--~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR--HGNSILSGGCGNWNA 157 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee--cccEEecCCcceEee
Confidence 3444444554444444444567799999999999999866322211 11122222 1222332 4455554432
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
-+..+.|+++..+....... ....|.+++-+|..++++++|+.||.+.+||.+.......+. ..|+.+
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l----------~ahk~~ 225 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL----------KAHKAE 225 (319)
T ss_pred ccceeeeccccccccccccc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH----------HHhhhh
Confidence 24566777654443322111 224499999999998999999999999999999874333222 227888
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
+..+.|+|.++..|+++++||.+..||..+
T Consensus 226 i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999999999999999764
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=5.7e-11 Score=105.46 Aligned_cols=289 Identities=17% Similarity=0.218 Sum_probs=186.9
Q ss_pred cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCC--CceEEEEEccCC--CcEEEEeCCCCcEEEEE
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ--GRVYKLAVEPGS--PYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd 132 (439)
.+.+.++..+| .|+-++.++.-|- .+.|+...-..+. .-.|. -.|-.+.|+|.. ++.+++ .....-.+|+
T Consensus 24 ~~~~~a~si~p--~grdi~lAsr~gl-~i~dld~p~~ppr--~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINP--SGRDIVLASRQGL-YIIDLDDPFTPPR--WLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWN 97 (1081)
T ss_pred cCcccceeecc--ccchhhhhhhcCe-EEEeccCCCCCce--eeeccCcchhcceecccCCCCceeEEe-cCcchhhhhh
Confidence 35677888999 8888888887764 4557654433222 11122 235566676643 334434 3444556788
Q ss_pred ccCCCceee-EEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 133 LRSDSATRL-FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 133 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
+.......+ +..+ .|...++.+.|+|+.+..+++++.|-.+..||+++.. .+....
T Consensus 98 lA~ss~~aIef~lh---------ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------------~p~ys~ 154 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLH---------GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------------RPFYST 154 (1081)
T ss_pred hhcCCccceEEEEe---------cCccceeccccCCCCCcceeeccccccceeeeccCCC--------------cceeee
Confidence 765433222 1111 1778899999999999999999999999999999754 112222
Q ss_pred cCCCccEEEEEEcc-CCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 212 GKNNIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 212 ~~~~~~i~~~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
..-......++|+. ++..+|+...+.|.+||.+.+. .++..+++|... +..+.|.......+
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEI 217 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhh
Confidence 33344566788885 5677888889999999999874 455667776554 77777534444577
Q ss_pred EEeCCCCeEEEEecCCCcee-EeecccccceEEEeecCCCcEEEE--EecCCeEE---------EeccCCC--CCCCCCC
Q 013644 291 MSGSDCGHLFIWKKKGGKLV-RLMVGDRHVVNQLEPHPHIPMFAT--CGIEKTVK---------LWAPMPT--DFPPLPD 356 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s--~~~dg~i~---------iw~~~~~--~~~~~~~ 356 (439)
.+.+.||+|++||....... ........+|..-.+.|-|.-... .-.+..+. .|+..++ .+..+.+
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 88999999999997644221 111223456777777776552111 11112333 3444332 2367789
Q ss_pred chhhhhhhhccccC---------cceEEEeCCCcEEEEEEeccc
Q 013644 357 NAEKIMKANKQGRE---------DHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 357 ~~~~~~~~~~~~~~---------~~~~~~~s~dg~v~~w~~~~~ 391 (439)
|...|....|.... +-.+|++|.|..+++|.+...
T Consensus 298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 99999988886542 348999999999999988553
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=6.2e-12 Score=107.91 Aligned_cols=248 Identities=13% Similarity=0.181 Sum_probs=165.7
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc-----eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG-----RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
+.+|+..|..++-.. +.+-+++++.|.+|++|.++... ..+..++..|+.+|..+-|..+.++ + ++.||.
T Consensus 731 f~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~-i--~ScD~g 805 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS-I--ASCDGG 805 (1034)
T ss_pred ccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce-e--eeccCc
Confidence 468999999888776 88899999999999999987432 2244668899999999999998764 3 356899
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe-ecCceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
|.+||.-.+............ .....|.++.-- ...++++| +...+|+++|.+..+....+..
T Consensus 806 iHlWDPFigr~Laq~~dapk~------~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kV-------- 869 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKE------GAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKV-------- 869 (1034)
T ss_pred ceeecccccchhHhhhcCccc------CCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEe--------
Confidence 999998777665533221110 022334444321 22445444 7788999999998775432211
Q ss_pred ccccccCCCccEEEEEEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC
Q 013644 207 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 285 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 285 (439)
....+...-+.+++..+.|+.++.+ +.|.|.+.|.+++. .+..+...... ...++ .|
T Consensus 870 --cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------vINswrpmecd--llqla--ap 927 (1034)
T KOG4190|consen 870 --CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------VINSWRPMECD--LLQLA--AP 927 (1034)
T ss_pred --ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------eeccCCcccch--hhhhc--Cc
Confidence 0113445678999999999999888 69999999999882 22222221111 33333 47
Q ss_pred CCceEEEeCCCCeEEE-EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 286 NDEYVMSGSDCGHLFI-WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 286 ~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
..+.++....|.++.+ |..-++....+.+....+..-+ -.-|..|+++.....+.+|.
T Consensus 928 sdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 928 SDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 7788888888999988 9877776555554333322111 12356778887777788875
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=3e-11 Score=117.08 Aligned_cols=193 Identities=13% Similarity=0.207 Sum_probs=149.7
Q ss_pred eeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
++.|-..|.++.=+|...+-+||+.||.|++|....+..+...-..-...|+.+.|+. .|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH--QGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc--cCCceeeeccCCceeecccC
Confidence 3445567888888898899999999999999999988887766555558999999999 99999999999999999985
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeC---CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG---EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
.......+.|......+.|-.. ++++++ .++.+.+||.........+... |...++++++-
T Consensus 2282 ---pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----------H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2282 ---PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----------HDGGATVLAYA 2345 (2439)
T ss_pred ---CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeee----------cCCCceEEEEc
Confidence 2233557789988899988773 456654 4678999997654433333211 77889999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccC
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNM 245 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 245 (439)
|.. .+|++|+.+|.|++||++..+++.. -+. +. ...++++++ .|.++||++..
T Consensus 2346 P~~-qllisggr~G~v~l~D~rqrql~h~--------------------~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2346 PKH-QLLISGGRKGEVCLFDIRQRQLRHT--------------------FQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred Ccc-eEEEecCCcCcEEEeehHHHHHHHH--------------------hhh----hh-hhheeeccCcccceEEEEccc
Confidence 976 8999999999999999997653221 111 33 456777775 99999999876
Q ss_pred C
Q 013644 246 G 246 (439)
Q Consensus 246 ~ 246 (439)
.
T Consensus 2400 ~ 2400 (2439)
T KOG1064|consen 2400 F 2400 (2439)
T ss_pred c
Confidence 4
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=9.4e-09 Score=101.75 Aligned_cols=282 Identities=8% Similarity=0.100 Sum_probs=160.4
Q ss_pred EEEEECCC-CCEEEEecCCCeEEEEeCCCCcceeeeec-C------------CcccEEEEEEeecCCCcEEEEec-CCCc
Q 013644 18 NAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFSYLS-G------------HLDNIFQTRIMPFTDDRKIITSS-ADGQ 82 (439)
Q Consensus 18 ~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~------------h~~~v~~~~~~~~~~~~~l~s~~-~dg~ 82 (439)
..++++++ ++++++-+..+.|++||.... .+..+-. + +-.....+++.+ +++.|+++. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 35788874 667777778889999997643 2222211 1 112357889988 777665554 4678
Q ss_pred EEEEEcccCceeeeEE-------ecCC-------CCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC
Q 013644 83 VRLGQIFEDGRMDTKR-------LGKH-------QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~-------~~~~-------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 148 (439)
|+++|+.++....... ..+. -.....++++|++..++++.+.++.|++||..++.... +......
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999986543221100 0000 12346799999665678888889999999988765422 1110000
Q ss_pred ----CCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC----CCcccccccc--cccCCCccE
Q 013644 149 ----ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD----TPVDTFCPRH--LIGKNNIHI 218 (439)
Q Consensus 149 ----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~i 218 (439)
........-.....++++|++..++++-+.++.|++||+.++......... .....+.... .....-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 000000011235679999988557777778899999999875421100000 0000000000 000011234
Q ss_pred EEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC
Q 013644 219 TGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 297 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg 297 (439)
..++++++|.++++.. ++.|++||..++................ ....+.- .....++ ++++|+++++-+.++
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG---~~~~a~l--~~P~GIa-vd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG---KALKAQL--SEPAGLA-LGENGRLFVADTNNS 880 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC---ccccccc--CCceEEE-EeCCCCEEEEECCCC
Confidence 5889999998777765 8999999987652100000000000000 0001111 1256777 799999999999999
Q ss_pred eEEEEecCCCce
Q 013644 298 HLFIWKKKGGKL 309 (439)
Q Consensus 298 ~i~iwd~~~~~~ 309 (439)
.|++||+.+++.
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999998765
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=117.71 Aligned_cols=222 Identities=15% Similarity=0.249 Sum_probs=160.6
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENS 151 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 151 (439)
+.+.....++...-|..+..... +..+-..|.++.-+|..++ .++|+.||.+++|....++.+..+...
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~----~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~------ 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM----IKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTA------ 2249 (2439)
T ss_pred ccCCcccCCccccceecccceeE----eecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeecc------
Confidence 33444444555555655433322 4446678899999999985 459999999999999988877766543
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEE
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 231 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 231 (439)
....++.+.|+.+| +.+..+..||.+.+|..... +......|......+.|-. ..++
T Consensus 2250 ----g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk----------------~~~s~qchnk~~~Df~Fi~--s~~~ 2306 (2439)
T KOG1064|consen 2250 ----GNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK----------------PYTSWQCHNKALSDFRFIG--SLLA 2306 (2439)
T ss_pred ----CcchhhhhhhcccC-CceeeeccCCceeecccCCc----------------ceeccccCCccccceeeee--hhhh
Confidence 23568899999987 78999999999999998731 1112245666677777765 4444
Q ss_pred Ee--c--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC
Q 013644 232 SY--N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 232 ~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
++ + ++.+.+||..... ..-..-..|... +++++ +-|..+.|++|+.+|.|++||++..
T Consensus 2307 tag~s~d~~n~~lwDtl~~~---------------~~s~v~~~H~~g--aT~l~-~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2307 TAGRSSDNRNVCLWDTLLPP---------------MNSLVHTCHDGG--ATVLA-YAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ccccCCCCCcccchhcccCc---------------ccceeeeecCCC--ceEEE-EcCcceEEEecCCcCcEEEeehHHH
Confidence 43 2 6799999976541 111222667766 78888 7899999999999999999999988
Q ss_pred ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCC
Q 013644 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP 355 (439)
Q Consensus 308 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~ 355 (439)
++++.++. +. ...++++++..|.|+||++..-.+ ..++
T Consensus 2369 ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2369 QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 88877764 44 556899999999999999976543 4444
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=5.6e-12 Score=113.98 Aligned_cols=168 Identities=13% Similarity=0.137 Sum_probs=120.6
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
.+|+..++|+.|...-+|++|+-+.++|+.|+-.|.|+++++.++.....+ .+|..+|+-+.-+. +|..+++.+.-.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~--dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSV--DGSTQLTSSSSS 1165 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccC--Ccceeeeecccc
Confidence 367888999999999999999999999999999999999999999766654 79999999998887 888887765533
Q ss_pred --cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 82 --QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 82 --~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
-..+|++.+.... .+.+ ..-.++.|+..... -+.|+......+||++++.....+...... .+..
T Consensus 1166 ~PlsaLW~~~s~~~~-~Hsf----~ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~-------~~y~ 1232 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGP-RHSF----DEDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVT-------SSYS 1232 (1516)
T ss_pred CchHHHhccccccCc-cccc----cccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchh-------hhhh
Confidence 4678998652221 1222 23457788776543 234555567899999999887764332221 1222
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
-++..|+|.+ .+++ .|| .+||.+..+
T Consensus 1233 ~n~a~FsP~D-~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1233 NNLAHFSPCD-TLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred ccccccCCCc-ceEe---eCc--eeeeeccHH
Confidence 3678899976 4544 344 478988643
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=1.8e-08 Score=85.47 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=125.1
Q ss_pred ECC-CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC-cEEEEEcccCceeeeEEe
Q 013644 22 FNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG-QVRLGQIFEDGRMDTKRL 99 (439)
Q Consensus 22 ~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~ 99 (439)
|++ +|.+++..|. |..-|.+...+-. .+ .+|...|.-..+.. +++-++.|..|| .+-|+|..+++. ..+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-iq--v~~~~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~e~---kr~ 397 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-IQ--VGKKGGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGGEV---KRI 397 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-EE--cCCCCceEEEEEcc--CCcceEEeccCCceEEEEecCCceE---EEe
Confidence 444 6788888876 7777777655432 22 37788888888887 888999999999 899999977654 335
Q ss_pred cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC
Q 013644 100 GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 100 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
...-+.|.++..+|+|++ ++++-....|.+.|+.+++....-.. ..+-|+.+.|+|++ +++|-+--+
T Consensus 398 e~~lg~I~av~vs~dGK~-~vvaNdr~el~vididngnv~~idkS-----------~~~lItdf~~~~ns-r~iAYafP~ 464 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKK-VVVANDRFELWVIDIDNGNVRLIDKS-----------EYGLITDFDWHPNS-RWIAYAFPE 464 (668)
T ss_pred eCCccceEEEEEcCCCcE-EEEEcCceEEEEEEecCCCeeEeccc-----------ccceeEEEEEcCCc-eeEEEecCc
Confidence 566789999999999985 55777778899999999876443322 34569999999986 888887666
Q ss_pred c----eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 180 E----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 180 g----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
| .|++||+..++..... .....=.+-+|.|++++|.-
T Consensus 465 gy~tq~Iklydm~~~Kiy~vT----------------T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVT----------------TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ceeeeeEEEEecCCCeEEEec----------------CCcccccCcccCCCCcEEEE
Confidence 5 6899999987643211 11122234567888876654
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1e-08 Score=91.31 Aligned_cols=198 Identities=7% Similarity=-0.009 Sum_probs=120.9
Q ss_pred ceEEEEEccCCCc-EEEEeCC--CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC--
Q 013644 105 RVYKLAVEPGSPY-IIYSCGE--DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-- 179 (439)
Q Consensus 105 ~v~~i~~~~~~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 179 (439)
......|+|+++. ++++... +..|.++|+.+++...... .........|+|++..++++.+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~------------~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS------------SQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec------------CCCcEEeeEECCCCCEEEEEEccCCC
Confidence 6778999999986 4433333 4569999998887655442 122345677999986666665544
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCC----eEEEEEccCCCCCCCCCCC
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE----LVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~----~i~i~d~~~~~~~~~~~~~ 255 (439)
..|.++|+.+++... + ..+........|+|||+.++..++. .|++.++.++.
T Consensus 257 ~~Iy~~dl~~g~~~~---------------L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-------- 312 (419)
T PRK04043 257 PDIYLYDTNTKTLTQ---------------I-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-------- 312 (419)
T ss_pred cEEEEEECCCCcEEE---------------c-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--------
Confidence 467788887654211 1 1111122345799999877766532 78888887652
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---------CeEEEEecCCCceeEeecccccceEEEeec
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 326 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 326 (439)
. +.+...... ... |+|+|++|+..+.. ..|.+.|+.+++... +... .......|+
T Consensus 313 --------~-~rlt~~g~~----~~~-~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~S 376 (419)
T PRK04043 313 --------V-EQVVFHGKN----NSS-VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFS 376 (419)
T ss_pred --------e-EeCccCCCc----Cce-ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEEC
Confidence 1 111111111 124 89999988766543 378888988876543 3322 223358899
Q ss_pred CCCcEEEEEecCC---eEEEeccCCCCCCCC
Q 013644 327 PHIPMFATCGIEK---TVKLWAPMPTDFPPL 354 (439)
Q Consensus 327 ~~~~~l~s~~~dg---~i~iw~~~~~~~~~~ 354 (439)
|||++|+....++ .+.+.++++.....+
T Consensus 377 PDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 377 SDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9999776655432 466667766544333
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.26 E-value=1.6e-08 Score=80.39 Aligned_cols=243 Identities=15% Similarity=0.155 Sum_probs=137.0
Q ss_pred EEECCCCCEEEEecCCCeEEEEeCCCCcc----eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 20 VEFNSTGDFLVSGSDDKLVIFWDWKDRRE----KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
++.+.+|++||.- .|..|-|-..++.-. ...+.+.....=..++|+| |+.+||.+...|+|+++|+.......
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccceeEE
Confidence 5678899988875 567888877655421 1222233344567899999 99999999999999999996433221
Q ss_pred eEE----ecCCCCceEEEEEccCC-----CcEEEEeCCCCcEEEEEccCC--CceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 96 TKR----LGKHQGRVYKLAVEPGS-----PYIIYSCGEDGFVQHFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 96 ~~~----~~~~~~~v~~i~~~~~~-----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+.. ...-...|..+.|.+.. .+.|++-..+|.++-|-+..+ +.-+......+... ....|.++.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-----yp~Gi~~~v 154 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-----YPHGINSAV 154 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-----CCCceeEEE
Confidence 100 11123567777776543 234556677888887776433 22222222222111 245699999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc---cCCCEEEEecCC-----
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS---NTSELLISYNDE----- 236 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~d~----- 236 (439)
++|.. ++|++|+.... ..+.. .+....+++-... |..+.+....++
T Consensus 155 y~p~h-~LLlVgG~~~~------~~~~s-------------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~ 208 (282)
T PF15492_consen 155 YHPKH-RLLLVGGCEQN------QDGMS-------------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASS 208 (282)
T ss_pred EcCCC-CEEEEeccCCC------CCccc-------------------cccccCceEEEEcCCCCcEEEccccCccccccc
Confidence 99986 66666654321 00000 0111112221111 111221111111
Q ss_pred -eEEEEEccCCCCCCCCCCCcccccccccceeEeC-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 237 -LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 237 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
+..+|.+- ....+.. ......|..|. .||||+.||+...+|.|.+|++.+-++...+.
T Consensus 209 ~~~~~~~~~-------------------~~~~fs~~~~~~d~i~kmS-lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 209 KRRGLLRIP-------------------SFKFFSRQGQEQDGIFKMS-LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccceeecc-------------------ceeeeeccccCCCceEEEE-ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11122211 1111111 11223488888 89999999999999999999999888777765
Q ss_pred cc
Q 013644 315 GD 316 (439)
Q Consensus 315 ~h 316 (439)
-+
T Consensus 269 ~~ 270 (282)
T PF15492_consen 269 QD 270 (282)
T ss_pred hh
Confidence 44
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=7.4e-09 Score=92.37 Aligned_cols=269 Identities=12% Similarity=0.089 Sum_probs=152.2
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCC
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQG 104 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 104 (439)
++..++.++.++.+..+|..+++.+.+.. ....+.+.... .+..++.++.++.+..||.++++.+..........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 35667788889999999998887765432 12233222122 34567777889999999998887654322221100
Q ss_pred c---eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee-EEEeecCCCCcEEEEeecCc
Q 013644 105 R---VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL-NAIVIDPRNPNYFAVGGSDE 180 (439)
Q Consensus 105 ~---v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg 180 (439)
. ..+.... ++ .++.+..++.+..+|.++++............... ......+ ....+. + ..+++++.+|
T Consensus 179 ~~~~~~sp~~~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~-~~~~~~~~~~p~~~--~-~~vy~~~~~g 251 (377)
T TIGR03300 179 TLRGSASPVIA-DG--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE-LERLVDVDGDPVVD--G-GQVYAVSYQG 251 (377)
T ss_pred eecCCCCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc-hhhhhccCCccEEE--C-CEEEEEEcCC
Confidence 0 0111121 23 46678889999999999987654332110000000 0000000 011111 2 4677788899
Q ss_pred eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCccccc
Q 013644 181 YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
.++.||..+++.+..... . ....... .++.+++...++.+..+|..++.
T Consensus 252 ~l~a~d~~tG~~~W~~~~-------------~----~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~------------- 300 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDA-------------S----SYQGPAV-DDNRLYVTDADGVVVALDRRSGS------------- 300 (377)
T ss_pred EEEEEECCCCcEEEeecc-------------C----CccCceE-eCCEEEEECCCCeEEEEECCCCc-------------
Confidence 999999988764321110 0 0111111 13444444459999999998762
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCe
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT 340 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 340 (439)
.+-........ ...... ..+..+++++.+|.|+++|..+++.+..+..+...+..--...++ .|+.++.||.
T Consensus 301 ---~~W~~~~~~~~-~~ssp~---i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~ 372 (377)
T TIGR03300 301 ---ELWKNDELKYR-QLTAPA---VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGD 372 (377)
T ss_pred ---EEEccccccCC-ccccCE---EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCce
Confidence 11111110000 011111 145788899999999999999999998887665433222222233 4778888999
Q ss_pred EEEe
Q 013644 341 VKLW 344 (439)
Q Consensus 341 i~iw 344 (439)
|..+
T Consensus 373 l~~~ 376 (377)
T TIGR03300 373 LYAF 376 (377)
T ss_pred EEEe
Confidence 8776
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.25 E-value=1.3e-08 Score=79.78 Aligned_cols=203 Identities=13% Similarity=0.015 Sum_probs=135.0
Q ss_pred EEEECC-----CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 19 AVEFNS-----TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 19 ~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
.+.|.| .-.+||.|+..|...+|...+.+........|...|+-+.=.- .....+..++.|.++++.++..+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c-d~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC-DLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc-ccccceeeccCCcceeEEEEecCcc
Confidence 456666 2357999999999999999887665555555555443222111 0234566778888999888865433
Q ss_pred eeeEEecCCCC--ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce-eeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 94 MDTKRLGKHQG--RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 94 ~~~~~~~~~~~--~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
... -|.. .+.+++++++++ ++++.+....|..|.+...... ..+.... ....-.+..|+..+
T Consensus 151 ~~~----~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~---------t~D~gF~~S~s~~~- 215 (344)
T KOG4532|consen 151 KFA----VHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAP---------TSDHGFYNSFSEND- 215 (344)
T ss_pred cce----eeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecc---------cCCCceeeeeccCc-
Confidence 211 1322 378999999998 6778888899999998765432 2222211 12224567788765
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC--EEEEe-cCCeEEEEEccCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGL 247 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~-~d~~i~i~d~~~~~ 247 (439)
..+|++..||++.|||++....... ........|.+.+..+.|++.|. +|... .-+.+.+.|+++..
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 7999999999999999997542111 01112245899999999998763 44444 48899999998873
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.23 E-value=1.1e-08 Score=87.29 Aligned_cols=265 Identities=15% Similarity=0.179 Sum_probs=163.5
Q ss_pred cceEEEEECCCCCEEEEecCCC---------------eEEEEeCCCCcceeeee------------------------cC
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDK---------------LVIFWDWKDRREKFSYL------------------------SG 55 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg---------------~i~iw~~~~~~~~~~~~------------------------~~ 55 (439)
..|..+.|+|.++||.|=+..+ .+.+||..++..+..+. .+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 5588999999999999865433 48999987764332210 00
Q ss_pred -----Cc---------------ccEEEEEEeecCCCcEEEE-----ecCCCcEEEEEcccCceeeeEEecCCCCceEEEE
Q 013644 56 -----HL---------------DNIFQTRIMPFTDDRKIIT-----SSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLA 110 (439)
Q Consensus 56 -----h~---------------~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~ 110 (439)
|. ..|....|+|..++..|+. ....+++++|.+..+..+....+..- .=..+.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLk 229 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLK 229 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee--cccEEE
Confidence 11 3466677777434444443 35577888888876665554444322 224678
Q ss_pred EccCCCcEEEEeC----------CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE-eecC
Q 013644 111 VEPGSPYIIYSCG----------EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV-GGSD 179 (439)
Q Consensus 111 ~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d 179 (439)
|.+.|+++++-.- ....++++++......... . ..++|..++|.|.+..+.++ |-..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~-----------~~~pVhdf~W~p~S~~F~vi~g~~p 297 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D-----------LKDPVHDFTWEPLSSRFAVISGYMP 297 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-c-----------ccccceeeeecccCCceeEEecccc
Confidence 8999987665331 1245777777643322211 1 35679999999987443333 3567
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec----CCeEEEEEccCCCCCCCCCCC
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~ 255 (439)
..+.++|++..- .. ......-+.+.|+|.+++++.++ .|.+.+|+.....
T Consensus 298 a~~s~~~lr~Nl-~~-----------------~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf-------- 351 (561)
T COG5354 298 ASVSVFDLRGNL-RF-----------------YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF-------- 351 (561)
T ss_pred cceeecccccce-EE-----------------ecCCcccccccccCcccEEEEecCCccccceEEeccCCce--------
Confidence 789999988641 10 11223345678999999887753 5789999986541
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC------CCCeEEEEecCCCceeEeecccccceEEEeecCCC
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 329 (439)
.....+.+.. ..-+. |+|+++++.+.. .|..|.||++...... ..+.+.|.|.+
T Consensus 352 -------~~~~~~~~~n----~s~~~-wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~ 411 (561)
T COG5354 352 -------KVAGAFNGLN----TSYCD-WSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSG 411 (561)
T ss_pred -------EEEEEeecCC----ceEee-ccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCc
Confidence 1222333332 23334 899999987764 3788999998743322 34567777777
Q ss_pred cEEEEEecCC
Q 013644 330 PMFATCGIEK 339 (439)
Q Consensus 330 ~~l~s~~~dg 339 (439)
++..+.+.+.
T Consensus 412 ~~~ttsSs~~ 421 (561)
T COG5354 412 QYVTTSSSCP 421 (561)
T ss_pred ccceeeccCC
Confidence 7665555443
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=7.6e-08 Score=93.65 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=174.7
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEE----eCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFW----DWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
.+.|.++.|-++...++.+..+|.|.+. +..+.. ......-...|.+++||| |+..|+.++.++++.+-.-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEecc
Confidence 4679999999999888888889999999 444332 233334567899999999 99999999999888774321
Q ss_pred ---------------cCcee-------ee------------------------EEecCCCCceEEEEEccCCCcEEEEeC
Q 013644 90 ---------------EDGRM-------DT------------------------KRLGKHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 90 ---------------~~~~~-------~~------------------------~~~~~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
..+.+ .+ ..+. +.+.-..|+|-.||.++.++.-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 00000 00 0011 2234567899999996443332
Q ss_pred --CC---CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec---CceEEEEeCcCCcccCC
Q 013644 124 --ED---GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSP 195 (439)
Q Consensus 124 --~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 195 (439)
.. ..+++|+-+ |.....-.. -.+--.+++|.|.| +++|+... ...|.+|.-...+.
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~-----------v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh--- 293 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEP-----------VDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH--- 293 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEecccc-----------CCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe---
Confidence 22 579999865 432222111 11223578999987 78887664 34566666443221
Q ss_pred CCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcc
Q 013644 196 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 275 (439)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (439)
..|..+. ......|..+.|++++.+||..-...|.+|-..+- .+-..+.+......
T Consensus 294 -------geF~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY--------------HWYLKqei~~~~~~- 349 (928)
T PF04762_consen 294 -------GEFTLRF--DPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY--------------HWYLKQEIRFSSSE- 349 (928)
T ss_pred -------eeEecCC--CCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC--------------EEEEEEEEEccCCC-
Confidence 1111111 23456789999999999999987666999987654 11112222211111
Q ss_pred eeeeEEeeCCCC-ceEEEeCCCCeEEEEec----CCCc--------eeEeec-----------------------ccccc
Q 013644 276 TVKGVNFFGPND-EYVMSGSDCGHLFIWKK----KGGK--------LVRLMV-----------------------GDRHV 319 (439)
Q Consensus 276 ~v~~~~~~s~~~-~~l~~~~~dg~i~iwd~----~~~~--------~~~~~~-----------------------~h~~~ 319 (439)
.+..+. |+|.. ..|...+.+|.+..++. ..+. .+..+. .-..+
T Consensus 350 ~~~~~~-Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~ 428 (928)
T PF04762_consen 350 SVNFVK-WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP 428 (928)
T ss_pred CCCceE-ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC
Confidence 133355 55533 34555555455544331 1110 011100 12468
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
|.+++|++++..+++-..||.|.+|.....
T Consensus 429 v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred cEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 999999999888999999999999986543
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.6e-09 Score=90.87 Aligned_cols=309 Identities=14% Similarity=0.113 Sum_probs=195.3
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCC--CcceeeeecCCcccEEEEEEeecCCCcEEEEecC-CCcEEEEEcc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD--RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-DGQVRLGQIF 89 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~ 89 (439)
|.+.|+.+..+ ..+++.+++.||.++.|.-.. +......+..|...|.+++.+- ++.++.+.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEee
Confidence 77888877654 456999999999999998643 3334444568889999999998 8999999777 9999999998
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCC--cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSP--YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
+-.......+..-.+.+..+ .++... .+.++.-.++.+.++|-....+...+.. ..|..+|..+.+.|
T Consensus 85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---------klH~sPV~~i~y~q 154 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---------KLHFSPVKKIRYNQ 154 (558)
T ss_pred ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---------ccccCceEEEEeec
Confidence 76554333333333333332 233221 2334445678899999776653332221 12677899999999
Q ss_pred CCCcEEEEeecCceEEEEeCcC-Cc-----ccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEE
Q 013644 168 RNPNYFAVGGSDEYARVYDIRK-CH-----WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 240 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i 240 (439)
.+ ..+++....|.|.-|.... .+ ..-.+..+..+ ...........++.|+|++..+.+-+ |..|++
T Consensus 155 a~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL------y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 155 AG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL------YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred cc-cceeeccccceeEeecCCCcccCccccccccccccchh------hcccccccCccceEEccccCcccccCcccEEEE
Confidence 87 7888988999999999873 11 11111111111 11133466788999999999998876 999999
Q ss_pred EEccCCCCCCCCCCCccc----------ccc------cccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 241 FEKNMGLGPSPLSLSPED----------LQK------REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~----------~~~------~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
+.+.++.-...+.-.... +.. ....+.+..|... ..+.++ |...|++|+.|+-= -|++.++
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~-~~~~~~-fdes~~flly~t~~-gikvin~ 304 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST-VGTNAV-FDESGNFLLYGTIL-GIKVINL 304 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc-ccceeE-EcCCCCEEEeecce-eEEEEEe
Confidence 999988533222111111 000 0111112222221 234444 89999999998874 4889999
Q ss_pred CCCceeEeecc------------------cccc-------eEEEeecCCCcEEEEEecCCeEEEe
Q 013644 305 KGGKLVRLMVG------------------DRHV-------VNQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 305 ~~~~~~~~~~~------------------h~~~-------v~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
.++++.+.+.. +... -..+.+-+|-.+++++-....+.++
T Consensus 305 ~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 305 DTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred ecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 88877665521 1000 0112344555577777777888888
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.22 E-value=2e-07 Score=90.86 Aligned_cols=319 Identities=15% Similarity=0.092 Sum_probs=176.2
Q ss_pred cccceEEEEECCCCCEEEEecC------CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC---CCcE
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSD------DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---DGQV 83 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~------dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i 83 (439)
+.+.-..++|-.||.|+|+.+. -..+|||+-+ +. +......-.+--.+++|.| .|++||+... ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrP--sG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRP--SGNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCC--CCCEEEEEEEcCCCcEE
Confidence 4455668999999999998763 2589999965 32 3332233333345789999 9999998765 3456
Q ss_pred EEEEcccCceeeeEEec--CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 84 RLGQIFEDGRMDTKRLG--KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.+|.-+. -.-..+.+. .....|..+.|++++. +|+....|. |.+|-..+-.--..... .+. ....+.
T Consensus 284 vFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei-~~~-------~~~~~~ 352 (928)
T PF04762_consen 284 VFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEI-RFS-------SSESVN 352 (928)
T ss_pred EEEecCC-cEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEE-Ecc-------CCCCCC
Confidence 6676432 211122233 4567899999999998 676665554 99998776542111111 111 122344
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCc----CCcccCC--------CCCC----CCc--ccccccc--cccCCCccEEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIR----KCHWYSP--------ISSD----TPV--DTFCPRH--LIGKNNIHITGL 221 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~--------~~~~----~~~--~~~~~~~--~~~~~~~~i~~~ 221 (439)
.+.|+|..+..|...+.+|.+..+++. .+..... +... .|+ ...+|+. ..-.-..+|..+
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 599999888888888877776554432 2211000 0000 000 0000100 111235789999
Q ss_pred EEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCccccccccc--ceeEeCCCCcceeeeEEeeCCCCceEEEeCC---
Q 013644 222 AYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--- 295 (439)
Q Consensus 222 ~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~--- 295 (439)
+|++++..+++. +|+.+.+|........... .+........ ............+..++|++++ .+++....
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 509 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVK--PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSDSN 509 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecCCCccccc--CcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecCcc
Confidence 999998755555 5999999986554221100 0000000000 0000011112237778855544 44444433
Q ss_pred CCeEEEEecCCCc---eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 296 CGHLFIWKKKGGK---LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 296 dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
...+.+++....+ .+.....-.+.+..+...++...++.-..+|.+...+....
T Consensus 510 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 510 QSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred cceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 3678888874332 22333333456666666666554666677998886665544
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=2.5e-08 Score=78.22 Aligned_cols=272 Identities=8% Similarity=-0.035 Sum_probs=165.2
Q ss_pred CCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeec---CCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEE
Q 013644 34 DDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF---TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKL 109 (439)
Q Consensus 34 ~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i 109 (439)
..-.+-+|+..+.. .+..+. ..+.|.|. ....+|+.|+..|...+|...+.+... .....|...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~-~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL-YQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccce-eeecccccchhhh
Confidence 34567778776543 233332 33555552 155689999999999999997655432 2233344433322
Q ss_pred EEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 110 AVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 110 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
.-.-+.+.-+..++.|.++++.++..+.....+... ...++++++++++ .++++.+....|..|.+..
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-----------~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-----------NLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeecc-----------ccceeeeEEcCCC-ceEEEecCCCcceEEEeCC
Confidence 222222223557888999999998876654444321 1237889999987 8999999989999999876
Q ss_pred CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE
Q 013644 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 268 (439)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
.... ............--+..|+.....+|++. ||.+.+||++....+... ....-
T Consensus 190 ~sey------------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-----------~sstr 246 (344)
T KOG4532|consen 190 ESEY------------IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE-----------ISSTR 246 (344)
T ss_pred ccce------------eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh-----------hcccC
Confidence 4311 01111122233445678898888888886 999999999876433211 11111
Q ss_pred eCCCCcceeeeEEeeCCCCc--eEEEeCCCCeEEEEecCCCceeEeec-------ccc-cceEEEeecCCCcEEEEEecC
Q 013644 269 SGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGGKLVRLMV-------GDR-HVVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 269 ~~~~~~~~v~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-------~h~-~~v~~~~~s~~~~~l~s~~~d 338 (439)
..|.+ .+..+. |++.|. +|+..-.-+.+.+.|++++...+.+. .|. ..|..-.|+.++..+.+...+
T Consensus 247 p~hnG--a~R~c~-Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 247 PHHNG--AFRVCR-FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CCCCC--ceEEEE-ecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 22333 477777 787653 55555556889999999886544332 233 237777777777665555543
Q ss_pred CeEEEeccCCCCCC
Q 013644 339 KTVKLWAPMPTDFP 352 (439)
Q Consensus 339 g~i~iw~~~~~~~~ 352 (439)
.+.-|++..+...
T Consensus 324 -~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 324 -QGAEYNILSRSRF 336 (344)
T ss_pred -hhheeecccccee
Confidence 3455666554433
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.18 E-value=3.2e-07 Score=76.50 Aligned_cols=224 Identities=12% Similarity=0.071 Sum_probs=133.8
Q ss_pred EEEECC-CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEe-ecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 19 AVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIM-PFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 19 ~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
++.|.+ ++.++++--..+.|..|+..++......+ .. ...+++. + ++ .|+.+... .+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~--~~G~~~~~~--~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PG--PNGMAFDRP--DG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SS--EEEEEEECT--TS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CC--CceEEEEcc--CC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 577888 78888888788999999998875433222 21 6677777 4 54 44444444 455669887765544
Q ss_pred EEec--C-CCCceEEEEEccCCCcEEEEeCCC--------CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 97 KRLG--K-HQGRVYKLAVEPGSPYIIYSCGED--------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 97 ~~~~--~-~~~~v~~i~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
.... . .....+.+++.|+|. +.++.... |.|..++.. ++....... -...+.++|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~------------~~~pNGi~~ 141 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG------------LGFPNGIAF 141 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE------------ESSEEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecC------------cccccceEE
Confidence 4442 2 346788999999997 55554332 345555555 333222221 223567777
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccC
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM 245 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~ 245 (439)
+|++..++++-+..+.|..|++..... .+.
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~------------------------~~~-------------------------- 171 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGG------------------------ELS-------------------------- 171 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTC------------------------CEE--------------------------
T ss_pred CCcchheeecccccceeEEEecccccc------------------------cee--------------------------
Confidence 777644445555666666666653210 000
Q ss_pred CCCCCCCCCCcccccccccceeE-eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEe
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE 324 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 324 (439)
....+ .........-.++ +..+|++.++....+.|.+++.+ |+.+..+......+++++
T Consensus 172 ------------------~~~~~~~~~~~~g~pDG~~-vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 172 ------------------NRRVFIDFPGGPGYPDGLA-VDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp ------------------EEEEEEE-SSSSCEEEEEE-EBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred ------------------eeeeEEEcCCCCcCCCcce-EcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 00111 0011101356677 78899988887788999999988 888887776656899999
Q ss_pred e-cCCCcEEEE
Q 013644 325 P-HPHIPMFAT 334 (439)
Q Consensus 325 ~-s~~~~~l~s 334 (439)
| .++.+.|+.
T Consensus 232 fgg~~~~~L~v 242 (246)
T PF08450_consen 232 FGGPDGKTLYV 242 (246)
T ss_dssp EESTTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 9 466554443
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=6.5e-08 Score=86.29 Aligned_cols=212 Identities=8% Similarity=0.007 Sum_probs=124.6
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcE-EEEecC---CCcEEEEEcccCceeeeEEecCCCCceEEEEE
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRK-IITSSA---DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAV 111 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 111 (439)
..|.+=|.+... ...+..+ +......|+| +++. ++..+. +..|.++|+.+++.... ....+......|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---ASSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCCCc-eeEEccC--CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEEE---ecCCCcEEeeEE
Confidence 355555554433 2223223 3778899999 9985 554433 35688889977765433 224455667889
Q ss_pred ccCCCcEEEEeCCC--CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--eEEEEeC
Q 013644 112 EPGSPYIIYSCGED--GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDI 187 (439)
Q Consensus 112 ~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~ 187 (439)
+|||+.++++.+.+ ..|.++|+.+++..+.... ........|+|+|..++++....+ .|.++|+
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccC------------CCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99999887776655 4577778877764332211 111234579999866666655444 5777787
Q ss_pred cCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C---------CeEEEEEccCCCCCCCCCCCcc
Q 013644 188 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D---------ELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
.+++... +..... ....|+|+|+.++... . ..|.+.|+.++.
T Consensus 309 ~~g~~~r---------------lt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---------- 360 (419)
T PRK04043 309 NSGSVEQ---------------VVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---------- 360 (419)
T ss_pred CCCCeEe---------------CccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------
Confidence 7655211 101111 1248999999887653 2 267888876651
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCC
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKG 306 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 306 (439)
.+.+..... ..... |+|||+.|+..+.. ..+.+.++..
T Consensus 361 -------~~~LT~~~~---~~~p~-~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 361 -------IRRLTANGV---NQFPR-FSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred -------eEECCCCCC---cCCeE-ECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 222222211 12344 89999988765543 2466667653
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=7.3e-08 Score=83.40 Aligned_cols=296 Identities=15% Similarity=0.146 Sum_probs=167.5
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC-----------CCc
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE-----------DGF 127 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----------dg~ 127 (439)
.-+-+.||| -|.||++--..| |.+|-=.+-... +.+ .| ..|.-+.|||..+| |++-+. ...
T Consensus 212 Tetyv~wSP--~GTYL~t~Hk~G-I~lWGG~~f~r~--~RF-~H-p~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSP--KGTYLVTFHKQG-IALWGGESFDRI--QRF-YH-PGVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecC--CceEEEEEeccc-eeeecCccHHHH--Hhc-cC-CCceeeecCCccce-EEEecCCccccCcccCCCce
Confidence 346689999 999999987665 778853322222 222 24 45888999999986 445432 256
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
+.|||+.+|...+.+...... ...-.-+.|+.++ .++|.-.. ..|.||+..+..++...
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~--------~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~K----------- 342 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSP--------YLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKK----------- 342 (698)
T ss_pred EEEEEccccchhcceeccCCC--------ccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccc-----------
Confidence 999999999988888764211 1112346788876 78877665 57888887764432211
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec---C---CeEEEEEccCCCCCCCCCCC-ccc------------------ccc-
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN---D---ELVYLFEKNMGLGPSPLSLS-PED------------------LQK- 261 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~---d---~~i~i~d~~~~~~~~~~~~~-~~~------------------~~~- 261 (439)
.-.-..|....|+|.+.+||--. + .++.+..+.+........+. ..+ ...
T Consensus 343 ----slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 343 ----SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred ----ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 11123355555666655555321 1 12222222222111000000 000 000
Q ss_pred -----cccceeE--eC-------CCCcceeeeEEeeCCCCceEEEeCC---CCeEEEEecCC-C---ceeEeecccccce
Q 013644 262 -----REEPQVY--SG-------HRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKG-G---KLVRLMVGDRHVV 320 (439)
Q Consensus 262 -----~~~~~~~--~~-------~~~~~~v~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~-~---~~~~~~~~h~~~v 320 (439)
......+ .. -.....+...+ |-|.|..+++-+. ..++.+|.+++ . +++..+. ....
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~velke~vi~Fa-WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~ 495 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFA-WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFA 495 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeecchheeeee-eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--cccc
Confidence 0000000 00 01112366777 7899987765543 36789998773 2 3334443 2466
Q ss_pred EEEeecCCCcEEEEEe---cCCeEEEeccCCCCC--CCCCCchhhhhhhhccccCcceEEEeCC------CcEEEEEEec
Q 013644 321 NQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTP------DVIMHVLRLQ 389 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~---~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~v~~w~~~ 389 (439)
+.+.|+|.|++++.+. ..|.+.++|..-... ...+.|. ......+.+.++++++++. |.-.++|.++
T Consensus 496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 8899999999877664 568899999874333 2233332 2233346677888888876 4456788886
Q ss_pred ccc
Q 013644 390 RRQ 392 (439)
Q Consensus 390 ~~~ 392 (439)
.+.
T Consensus 574 Grl 576 (698)
T KOG2314|consen 574 GRL 576 (698)
T ss_pred cHH
Confidence 553
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3e-09 Score=89.31 Aligned_cols=265 Identities=15% Similarity=0.086 Sum_probs=171.3
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc-CceeeeEEecCCCCceEEEEEccCCCcEEEEeCC-CCcEEEEE
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE-DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE-DGFVQHFD 132 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd 132 (439)
-|...|+.+.-. -.+++.+++.||.++.|.-.. ........+..|...|.+++.+-++- ++.+.+. |..++++|
T Consensus 7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEE
Confidence 477778877665 578999999999999997644 22222344667888999999999986 6778777 99999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC-cEEE-EeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-NYFA-VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
++.-..+..+....++. ..+...+|... ..++ +.-.++.+.++|-....+ .....
T Consensus 83 vEn~DminmiKL~~lPg----------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------------q~~~f 139 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPG----------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------------QDGYF 139 (558)
T ss_pred eeccchhhhcccccCCC----------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------------cccee
Confidence 99876655444333221 11222223111 1333 334678899999775431 12233
Q ss_pred ccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 211 IGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
..-|..+|..+.+++-+..+++.. .|-|.-|........-...+. ..+.....+ +.-........++. ++|++..
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~-~~~K~eTdL--y~f~K~Kt~pts~E-fsp~g~q 215 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLN-FELKHETDL--YGFPKAKTEPTSFE-FSPDGAQ 215 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccc-ccccccchh--hcccccccCccceE-EccccCc
Confidence 356889999999999999888887 899999987642100000000 000000111 11112223367777 8999999
Q ss_pred EEEeCCCCeEEEEecCCCceeEeec--------------------------------cccc-ceEEEeecCCCcEEEEEe
Q 013644 290 VMSGSDCGHLFIWKKKGGKLVRLMV--------------------------------GDRH-VVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------~h~~-~v~~~~~s~~~~~l~s~~ 336 (439)
+.+-+.|..|+++..++|++++.+. .|.. .-+.+.|...+++|+-++
T Consensus 216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 9999999999999999987665441 1221 235567778888888776
Q ss_pred cCCeEEEeccCCCCC
Q 013644 337 IEKTVKLWAPMPTDF 351 (439)
Q Consensus 337 ~dg~i~iw~~~~~~~ 351 (439)
.=| |++.++.+++.
T Consensus 296 ~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 296 ILG-IKVINLDTNTV 309 (558)
T ss_pred cee-EEEEEeecCeE
Confidence 543 77777766654
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.11 E-value=2.4e-10 Score=64.33 Aligned_cols=38 Identities=32% Similarity=0.733 Sum_probs=36.5
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEe
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWD 42 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~ 42 (439)
+++++|++|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999999999999999999997
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=1.8e-09 Score=86.33 Aligned_cols=249 Identities=13% Similarity=0.106 Sum_probs=145.6
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc---eeeeEEecCCC------------CceEEEEEccCC-CcEE
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG---RMDTKRLGKHQ------------GRVYKLAVEPGS-PYII 119 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~------------~~v~~i~~~~~~-~~~l 119 (439)
....|+++.|.. .|.+|++|...|.|.++.-.... ......+++|. ..|..+.|..++ ..-+
T Consensus 25 ead~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 446789999988 89999999999999999765433 11112244443 457788876543 3345
Q ss_pred EEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe---ecCceEEEEeCcCCcccCCC
Q 013644 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG---GSDEYARVYDIRKCHWYSPI 196 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~ 196 (439)
+..+.|.+|++|.+....... +........-. .+..+++++.. .|..+ -.|..|..+
T Consensus 103 LlstNdktiKlWKiyeknlk~-va~nnls~~~~-~~~~g~~~s~~-------~l~lprls~hd~iiaa~----------- 162 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKV-VAENNLSDSFH-SPMGGPLTSTK-------ELLLPRLSEHDEIIAAK----------- 162 (460)
T ss_pred EEecCCceeeeeeeecccchh-hhccccccccc-cccCCCcCCHH-------HhhcccccccceEEEec-----------
Confidence 577899999999987653221 11111110000 00011111100 00000 001111111
Q ss_pred CCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc--
Q 013644 197 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-- 274 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 274 (439)
+.+.....|...|.++.++.+.+.+.++.|-+|.+|++........+ ..++.|...
T Consensus 163 ---------p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnI-------------VDiKP~nmeeL 220 (460)
T COG5170 163 ---------PCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNI-------------VDIKPHNMEEL 220 (460)
T ss_pred ---------cceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEE-------------EeccCccHHHH
Confidence 11111256788899999999999999999999999998765322111 111112110
Q ss_pred -ceeeeEEeeCCC-CceEEEeCCCCeEEEEecCCCcee------E----------eecccccceEEEeecCCCcEEEEEe
Q 013644 275 -QTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLV------R----------LMVGDRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 275 -~~v~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~------~----------~~~~h~~~v~~~~~s~~~~~l~s~~ 336 (439)
.-|++.. |+|. ...+...+..|.|++-|++...+. . -+.+-...|..+.|+++|+++++-+
T Consensus 221 teVItSae-Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 221 TEVITSAE-FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred HHHHhhcc-cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 1155555 5664 456667777899999998743211 0 1112235788999999999998765
Q ss_pred cCCeEEEeccCCCC
Q 013644 337 IEKTVKLWAPMPTD 350 (439)
Q Consensus 337 ~dg~i~iw~~~~~~ 350 (439)
. -+|+|||+.-.+
T Consensus 300 y-ltvkiwDvnm~k 312 (460)
T COG5170 300 Y-LTVKIWDVNMAK 312 (460)
T ss_pred c-ceEEEEeccccc
Confidence 4 589999986544
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.10 E-value=5.8e-07 Score=71.79 Aligned_cols=244 Identities=11% Similarity=0.029 Sum_probs=128.0
Q ss_pred EEeecCCCcEEEEecCCCcEEEEEcccCceeee---EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCcee
Q 013644 64 RIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT---KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATR 140 (439)
Q Consensus 64 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 140 (439)
+.+. +|+.||.. .|..|.|=..++.-.... ...+.....-+.++|+||+. +||.+...|+|+++|+..... .
T Consensus 4 ~~~~--~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~l-f 78 (282)
T PF15492_consen 4 ALSS--DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSEL-F 78 (282)
T ss_pred eecC--CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEeccccee-E
Confidence 4444 66666654 445555544433211111 11122233457899999997 788999999999999986433 3
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecCCC-----CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDPRN-----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
.+........ .-...|..+.|.+.. ...|++-...|.++-|-+..+... ..+..-...+.....
T Consensus 79 ~I~p~~~~~~----d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-------~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 79 VIPPAMSFPG----DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ-------GYQENHSFSFSSHYP 147 (282)
T ss_pred EcCcccccCC----ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC-------cceeeEEEEecccCC
Confidence 3322111111 123456667665432 235666677788877776432110 000001111223346
Q ss_pred ccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 216 IHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
..|.++.++|..++|++++ ...-.. -++....-+...+.--+|..+.+. .
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~---------------------------s~a~~~GLtaWRiL~~~Pyyk~v~-~ 199 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGM---------------------------SKASSCGLTAWRILSDSPYYKQVT-S 199 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCcc---------------------------ccccccCceEEEEcCCCCcEEEcc-c
Confidence 7899999999988887764 211000 000001100111100122222211 1
Q ss_pred CCCC------eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 294 SDCG------HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 294 ~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
..|+ +-.+|.+-+.+...........|..|..||||+.||+...+|.|.+|++.+-++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 1111 123344333322222223457899999999999999999999999999976543
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=7.6e-09 Score=92.11 Aligned_cols=174 Identities=11% Similarity=0.172 Sum_probs=129.9
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 234 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 234 (439)
......|+.|+... .++++|+.||.+++..+.+...-.....-.........+.+.+|...|..+.|+.+.+.|.++.
T Consensus 13 nnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 45668999999875 7999999999999998876543222222223334455667799999999999999999999986
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCcee-Eee
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLM 313 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~ 313 (439)
+|-|.+|-+-.+ .....+....+...|.+++ |..+|..++....||.|.+=.+...+.. +.+
T Consensus 92 ~GlIiVWmlykg----------------sW~EEMiNnRnKSvV~Sms-Wn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 92 SGLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMS-WNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred CceEEEEeeecc----------------cHHHHHhhCcCccEEEEEE-EcCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence 999999998776 3444444555556789999 7999999999999999887666533221 122
Q ss_pred cccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 314 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 314 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
++ .....+.|++|.+.+..+-..|.+.++|..+.
T Consensus 155 kg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 155 KG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred ch--heccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 22 23346889999998888888899999997643
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=1.4e-06 Score=78.16 Aligned_cols=317 Identities=10% Similarity=-0.002 Sum_probs=170.4
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEE------EEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEE
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIF------QTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKR 98 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~------~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 98 (439)
.+..+++++.+|.+.-+|..+++.+-+.......... .+.-.|...+..++.++.++.+..+|.++++..-...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 3556777788899999999988866553211110000 0000111145677788889999999998888765443
Q ss_pred ecCCCCceEE-EEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 99 LGKHQGRVYK-LAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 99 ~~~~~~~v~~-i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
+.+ .+.+ .... ++ .++.+..++.|..+|.++++........... ........++ .. + ..++.++
T Consensus 148 ~~~---~~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~--~~~~~~~sP~----v~--~-~~v~~~~ 212 (394)
T PRK11138 148 VAG---EALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPS--LTLRGESAPA----TA--F-GGAIVGG 212 (394)
T ss_pred CCC---ceecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCc--ccccCCCCCE----EE--C-CEEEEEc
Confidence 332 2221 1121 33 4557788999999999999877665432100 0000000111 11 2 3566677
Q ss_pred cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcc
Q 013644 178 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
.+|.+..+|..+++..-......+...............++ + .++.+++++.++.+..+|..++.
T Consensus 213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v-~~~~vy~~~~~g~l~ald~~tG~---------- 277 (394)
T PRK11138 213 DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----V-VGGVVYALAYNGNLVALDLRSGQ---------- 277 (394)
T ss_pred CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE----E-ECCEEEEEEcCCeEEEEECCCCC----------
Confidence 88999999999887543322111100000000000001111 1 14555555568999999988772
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-cceEEEeecCCCcEEEEEe
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~ 336 (439)
..-... ... ...+. ..+..++.++.+|.+..+|..+|+.+.....-. ....+... .+.+|+.++
T Consensus 278 ------~~W~~~--~~~--~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 278 ------IVWKRE--YGS--VNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred ------EEEeec--CCC--ccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence 111111 000 11111 245677778889999999999998765433111 11122222 245677889
Q ss_pred cCCeEEEeccCCCCCC-CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 337 IEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 337 ~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
.||.|.+.|..+++.. ...-....+.... -..+..++..+.||.+..++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P--~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEP--VVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCC--EEECCEEEEEeCCceEEEEeC
Confidence 9999999999888752 1111111111110 112335666778888887764
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=7.9e-09 Score=85.64 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=108.8
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeee--cCCcccEEEEEEeecCCCcEEEEe---cCCCcEEEEEcccC
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYL--SGHLDNIFQTRIMPFTDDRKIITS---SADGQVRLGQIFED 91 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iw~~~~~ 91 (439)
+..+..++.+++||.+..+....++++....+..+.+ ..-...-+++.|.. +......+ +....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee--ccceEEEEeecCCceeeeeeccccc
Confidence 3455677889999998888877777776544311111 11122334445544 44444443 44456666666543
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
.. ..+-+|-.-++.++|+||++ +++++..|..|++-....-..+..+.. +|..-|..++.-++ .
T Consensus 143 ~~---~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~Iesfcl----------GH~eFVS~isl~~~--~ 206 (390)
T KOG3914|consen 143 RC---EPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCL----------GHKEFVSTISLTDN--Y 206 (390)
T ss_pred Cc---chhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhcc----------ccHhheeeeeeccC--c
Confidence 33 33668999999999999998 567999999999977665444433322 16777999999884 5
Q ss_pred EEEEeecCceEEEEeCcCCcccC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYS 194 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~ 194 (439)
.|++|+.|++|++||+++++.+.
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred eeeecCCCCcEEEEecccCCccc
Confidence 78999999999999999998654
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=1.3e-09 Score=61.32 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=36.9
Q ss_pred CceeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 307 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 307 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
++++..+.+|...|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=9.8e-09 Score=85.07 Aligned_cols=162 Identities=9% Similarity=0.047 Sum_probs=107.2
Q ss_pred EEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC
Q 013644 218 ITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 296 (439)
Q Consensus 218 i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d 296 (439)
...+..++.++++|++. +....++++..... ..+....+.....+..+..+. .+......-..++.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------------~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK------------GAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDV 131 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC------------cceeeeEeecccCcceeeeee-ccceEEEEeecCCc
Confidence 44556778889999886 67777777765421 123344444444443344443 22222233334555
Q ss_pred CeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC-CCC-CCCchhhhhhhhccccCcceE
Q 013644 297 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP-LPDNAEKIMKANKQGREDHSR 374 (439)
Q Consensus 297 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (439)
..+.+|....+.+ ..+.||-..++.++|+||+++|+++..|..|+|=.....- ... .-||..-|..... .++..+
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl--~~~~~L 208 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL--TDNYLL 208 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee--ccCcee
Confidence 6677777665443 4456899999999999999999999999999997764433 233 3356666544432 235568
Q ss_pred EEeCCCcEEEEEEecccceee
Q 013644 375 ITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 375 ~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+++|.|+++++|++.+++.+.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred eecCCCCcEEEEecccCCccc
Confidence 999999999999999998764
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.4e-09 Score=86.86 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=117.5
Q ss_pred EEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC
Q 013644 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 199 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 199 (439)
++.+.+..|-+-|++++-..... .+..|.++.|...+ ++++.|..+|.|..+|++....-.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-------------sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~----- 288 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-------------SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGN----- 288 (425)
T ss_pred ecccccceeEEEEeecccccccc-------------cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCC-----
Confidence 45667778888888887543322 25568888898865 899999999999999999863111
Q ss_pred CCcccccccccccCCCccEEEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCccee
Q 013644 200 TPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 277 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (439)
..+ ...--|...|+++.... ++++|.+++ +|+|.+||.+.-. ....++.+.+|.+....
T Consensus 289 ----~~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 289 ----GWC--AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAY 349 (425)
T ss_pred ----Ccc--eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-------------cccceeeeecccccccc
Confidence 011 11135788899998877 677777766 9999999998652 11347889999876554
Q ss_pred eeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc
Q 013644 278 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 278 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
.-+. ..+....+++++.|...+||.+.+|.++.++...
T Consensus 350 l~~~-v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 350 LPAH-VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccc-cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 4444 6778889999999999999999999999887643
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-07 Score=78.95 Aligned_cols=266 Identities=14% Similarity=0.194 Sum_probs=146.6
Q ss_pred EEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCc
Q 013644 38 VIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY 117 (439)
Q Consensus 38 i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 117 (439)
+++.+..+.+... ++..|...|..++|+|+ +..++..++.+..|+|.|+++...+.. +..+ ..+++++|.-+..+
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vss--y~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSS--YIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCcc-ccceeeeeccCceEEEEecccceeeeh--eecc-CCceeeeeccCCcc
Confidence 4455544444433 56788889999999994 334788899999999999988766533 4445 78999999999999
Q ss_pred EEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee------cCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI------DPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 118 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
.+++|..+|.|.+||++..+........+. ...+|..++. .+.+ .+++.... .+..|.+....
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~--------t~~pv~~i~~~~~n~~f~~g-glLv~~lt--~l~f~ei~~s~ 318 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANV--------TINPVHKIAPVQPNKIFTSG-GLLVFALT--VLQFYEIVFSA 318 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhh--------ccCcceeecccCcccccccc-ceEEeeeh--hhhhhhhhccc
Confidence 999999999999999997653322111110 1112222222 2223 24444333 24556554322
Q ss_pred ccCCCCCCCCcccccccc-cccCCCccEEEEEEccCCC-EEEEec-CC---e---EEE-EEccCCCCCCCCCCCcccccc
Q 013644 192 WYSPISSDTPVDTFCPRH-LIGKNNIHITGLAYSNTSE-LLISYN-DE---L---VYL-FEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~~-d~---~---i~i-~d~~~~~~~~~~~~~~~~~~~ 261 (439)
. ++.. ...+..+...++++.+..+ .|++.. +. . +.. -|...+. ..
T Consensus 319 ~-------------~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~------------pV 373 (463)
T KOG1645|consen 319 E-------------CLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF------------PV 373 (463)
T ss_pred c-------------CCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc------------ee
Confidence 0 1111 1123345556666666443 344432 11 0 000 0000110 00
Q ss_pred cccceeEeCCCC-c-ceeeeEEeeCCCCceEE-EeCCCCeEEEEecCCCceeEeecccccceEEEeecC-CCc-EEEEEe
Q 013644 262 REEPQVYSGHRN-S-QTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIP-MFATCG 336 (439)
Q Consensus 262 ~~~~~~~~~~~~-~-~~v~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~-~l~s~~ 336 (439)
........+... . .+-..+. -.++.++++ +|...+.+.+||..+++.++.+.-. .+|..++... ++. +|++-
T Consensus 374 c~~r~~~~Gs~~~kl~t~~ai~-~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L- 450 (463)
T KOG1645|consen 374 CGKRRTYFGSKQTKLSTTQAIR-AVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL- 450 (463)
T ss_pred eeecccccCCccccccccccee-ccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhe-
Confidence 000000000000 0 0001111 244556654 4455689999999999999988743 7888877543 333 55554
Q ss_pred cCCeEEEeccC
Q 013644 337 IEKTVKLWAPM 347 (439)
Q Consensus 337 ~dg~i~iw~~~ 347 (439)
.|..++|+..+
T Consensus 451 Td~~v~Iyk~e 461 (463)
T KOG1645|consen 451 TDDRVHIYKNE 461 (463)
T ss_pred ecceEEEEecC
Confidence 46688888754
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=8.6e-07 Score=73.73 Aligned_cols=234 Identities=18% Similarity=0.174 Sum_probs=132.0
Q ss_pred CCeEEEEeCCCCcceeeeecCC-cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 35 DKLVIFWDWKDRREKFSYLSGH-LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 35 dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
+|+|..||..+++.+.+.-... .....+. ..+ ++..+++++.++.|..||..+++......+....... ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeec
Confidence 6889999998888776652211 1222221 232 5677777789999999999998877655553322222 1223
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCccc
Q 013644 114 GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193 (439)
Q Consensus 114 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 193 (439)
++ .++.++.++.++.+|..+++.............. ........+. + ..++++..++.|..+|+++++.+
T Consensus 76 ~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-----~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 76 GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-----VRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-----TB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEE
T ss_pred cc--ccccccceeeeEecccCCcceeeeeccccccccc-----cccccCceEe--c-CEEEEEeccCcEEEEecCCCcEE
Confidence 33 3446667889999999999987764322211100 0011122222 3 57788888999999999998864
Q ss_pred CCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC
Q 013644 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 273 (439)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (439)
.......+...... . ....+..-....++.++++..++.+..+|+.++ +.. ......
T Consensus 146 w~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg----------------~~~--w~~~~~ 202 (238)
T PF13360_consen 146 WKYPVGEPRGSSPI----S-SFSDINGSPVISDGRVYVSSGDGRVVAVDLATG----------------EKL--WSKPIS 202 (238)
T ss_dssp EEEESSTT-SS--E----E-EETTEEEEEECCTTEEEEECCTSSEEEEETTTT----------------EEE--EEECSS
T ss_pred EEeecCCCCCCcce----e-eecccccceEEECCEEEEEcCCCeEEEEECCCC----------------CEE--EEecCC
Confidence 43222111000000 0 001122222333455555555775444488876 211 221111
Q ss_pred cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE
Q 013644 274 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 311 (439)
Q Consensus 274 ~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 311 (439)
....+ ....+..|+.++.++.|..||+.+|+.+.
T Consensus 203 --~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 203 --GIYSL--PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ---ECEC--EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred --CccCC--ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 12221 23567777777789999999999998764
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.89 E-value=7.4e-06 Score=67.71 Aligned_cols=208 Identities=11% Similarity=0.092 Sum_probs=126.5
Q ss_pred eEEEEECC-CCCEEEEecCCC-eEEEEeCCCCcceeeeecCCcccE--EEEEEeecCCCcEEEEecC-----CCcEEEEE
Q 013644 17 VNAVEFNS-TGDFLVSGSDDK-LVIFWDWKDRREKFSYLSGHLDNI--FQTRIMPFTDDRKIITSSA-----DGQVRLGQ 87 (439)
Q Consensus 17 I~~~~~s~-~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~-----dg~i~iw~ 87 (439)
-..++.+| .+..++.+-.-| ...+||..+++....+. ...+.- =.-.|++ ||++|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEE
Confidence 34678888 455666665544 57789998887665432 221111 1357999 9999998644 58999999
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC-----------------CCcEEEEEccCCCceeeEEeeccCCC
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE-----------------DGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
.. .....+..+..|.-.-..+.+.|+++.++++-+. +..+...|..+++.+.......
T Consensus 84 ~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~---- 158 (305)
T PF07433_consen 84 AA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP---- 158 (305)
T ss_pred Cc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc----
Confidence 97 3333345566666666778899999765544321 2344555566666555433211
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCc-------eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEE
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 223 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 223 (439)
..|+..+..+++.+++ ..++..-..| -|-+++... .+..+. .+......-...+-+|++
T Consensus 159 ---~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~--------~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 159 ---DLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLP--------APEEQWRRLNGYIGSIAA 224 (305)
T ss_pred ---cccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC--cceecc--------CChHHHHhhCCceEEEEE
Confidence 1156679999999986 3433332222 123333221 111000 011111334678999999
Q ss_pred ccCCCEEEEec--CCeEEEEEccCC
Q 013644 224 SNTSELLISYN--DELVYLFEKNMG 246 (439)
Q Consensus 224 ~~~~~~l~~~~--d~~i~i~d~~~~ 246 (439)
++++.++++++ .+.+.+||..++
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCC
Confidence 99998887775 889999999887
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=7.6e-08 Score=75.25 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=113.2
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCC-----------cceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDR-----------REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
|+.+.++.+- .|+++..++.+.......+ ......+..|.++-.+-..+- .++.++++..||.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~--~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM--TDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc--cCCceEecCCCceEEE
Confidence 5555555433 4566655555544433222 112222233333332222232 5678999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC------CcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
.+.+.......+.-..|.+ -.+.+....+. ++ .++.- +..+.|+++..+....-.. ....
T Consensus 116 ~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~-~i-~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-----------~~~~ 181 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSG-SASRKICRHGN-SI-LSGGCGNWNAQDNFYANTLDPIKTLIPSKK-----------ALDA 181 (319)
T ss_pred EechHHHhhhhhccccccc-ccccceeeccc-EE-ecCCcceEeeccceeeeccccccccccccc-----------cccc
Confidence 9876522111111111111 12223333443 23 22222 2344555543332211110 1233
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEE-ecCCe
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDEL 237 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-~~d~~ 237 (439)
|.+++-+|...+++++|+.||.+.+||.+... .+...+..|+.+|..+-|+|.. ..|.+ +.||.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEccccc--------------chHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 89999999887899999999999999999864 4455668899999999999864 44444 45999
Q ss_pred EEEEEccC
Q 013644 238 VYLFEKNM 245 (439)
Q Consensus 238 i~i~d~~~ 245 (439)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999754
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=5.5e-06 Score=74.37 Aligned_cols=268 Identities=13% Similarity=0.071 Sum_probs=148.4
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCc
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGR 105 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 105 (439)
+..++.++.+|.+..+|..+++.+-+... ...+.+--.. .+..++.+..++.+..+|..+++..-..........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV--AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC--CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 44566777889999999999987665421 1222221111 345677778889999999998887644332210000
Q ss_pred ---eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC--CCCcEEEEeecCc
Q 013644 106 ---VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP--RNPNYFAVGGSDE 180 (439)
Q Consensus 106 ---v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg 180 (439)
..+-... ++ .++.++.+|.+..+|..+++............... ......+..+| .+ ..++.++.+|
T Consensus 195 ~~~~~sP~v~-~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~----~~~~~~~~~sP~v~~-~~vy~~~~~g 266 (394)
T PRK11138 195 LRGESAPATA-FG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE----IDRLVDVDTTPVVVG-GVVYALAYNG 266 (394)
T ss_pred ccCCCCCEEE-CC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccc----hhcccccCCCcEEEC-CEEEEEEcCC
Confidence 0011111 22 35567789999999999988655433211100000 00000111111 13 3566677889
Q ss_pred eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCccccc
Q 013644 181 YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 181 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
.+..+|..+++.+-.... . ....+.. .++.+++...++.+..+|..++.
T Consensus 267 ~l~ald~~tG~~~W~~~~-------------~----~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~------------- 315 (394)
T PRK11138 267 NLVALDLRSGQIVWKREY-------------G----SVNDFAV-DGGRIYLVDQNDRVYALDTRGGV------------- 315 (394)
T ss_pred eEEEEECCCCCEEEeecC-------------C----CccCcEE-ECCEEEEEcCCCeEEEEECCCCc-------------
Confidence 999999998874322110 0 0011111 23455555568999999987762
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE-EeecCCCcEEEEEecCC
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ-LEPHPHIPMFATCGIEK 339 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~dg 339 (439)
..-........ ...+.. . .+.+|+.++.+|.+++.|..+|+.+....-....+.+ ..+ .+..|+.++.||
T Consensus 316 ---~~W~~~~~~~~-~~~sp~-v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G 386 (394)
T PRK11138 316 ---ELWSQSDLLHR-LLTAPV-L--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDG 386 (394)
T ss_pred ---EEEcccccCCC-cccCCE-E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCc
Confidence 11100000000 011111 1 2567788899999999999999988776543332222 222 234677888999
Q ss_pred eEEEecc
Q 013644 340 TVKLWAP 346 (439)
Q Consensus 340 ~i~iw~~ 346 (439)
.|..+++
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9887764
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=3.7e-06 Score=69.42 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=123.4
Q ss_pred EEECCCCCEEEEec-----CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC---------------
Q 013644 20 VEFNSTGDFLVSGS-----DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA--------------- 79 (439)
Q Consensus 20 ~~~s~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--------------- 79 (439)
-.||+||++|.+.- ..|.|-|||...+-.....+..|.-.-..+.+.| |+..|+.+-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p--DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP--DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC--CCCEEEEEcCCCccCcccCceecCh
Confidence 57999999999863 4589999999844333344456665667788999 9977776521
Q ss_pred ---CCcEEEEEcccCceeeeEEe--cCCCCceEEEEEccCCCcEEEEeCCCCc-------EEEEEccCCCceeeEEeecc
Q 013644 80 ---DGQVRLGQIFEDGRMDTKRL--GKHQGRVYKLAVEPGSPYIIYSCGEDGF-------VQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 80 ---dg~i~iw~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~ 147 (439)
+.++.+.|..+++.+....+ .-|.-+|..+++.++|. +++..-..|. |-+++ .++....+.....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~ 210 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEE 210 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEc--CCCcceeccCChH
Confidence 23455566677777666666 44788999999999986 3433322221 22222 2222222211100
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 227 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (439)
....-...+-+|++++++..+.+++=..+.+.+||..+++.+... .-..+..++..+++
T Consensus 211 ----~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~-----------------~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 211 ----QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV-----------------PLPDACGVAPTDDG 269 (305)
T ss_pred ----HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc-----------------ccCceeeeeecCCc
Confidence 001124568999999988555566667789999999998754322 12346667777776
Q ss_pred CEEEEecCCeEEEEEc
Q 013644 228 ELLISYNDELVYLFEK 243 (439)
Q Consensus 228 ~~l~~~~d~~i~i~d~ 243 (439)
+++++..|.+.....
T Consensus 270 -f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 270 -FLVSSGQGQLIRLSP 284 (305)
T ss_pred -eEEeCCCccEEEccC
Confidence 666666666554443
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.2e-06 Score=79.64 Aligned_cols=192 Identities=15% Similarity=0.199 Sum_probs=128.0
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
.+.++|++++ +++|+-|..+|.|++.+....- .+ ...|... .- +|.++++|+.||+|.|-.+.+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~-~~~~s~~------~~--~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KT-NFDHSSS------IL--EGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--cc-ccccccc------cc--CCceEEEecCCCcEEEeeccCCcc
Confidence 4667788877 7789999999999999976542 22 2345443 33 899999999999999999988776
Q ss_pred eeeEEecCCCCceEEEEEccC----CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 94 MDTKRLGKHQGRVYKLAVEPG----SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
..... ...++.+++++|+ ....+++||.-| +.++.-+-........... ..++|.++.|..
T Consensus 106 ~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~---------~eG~I~~i~W~g-- 170 (846)
T KOG2066|consen 106 ITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE---------GEGPIHSIKWRG-- 170 (846)
T ss_pred ceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec---------CccceEEEEecC--
Confidence 54433 3478999999998 122577999888 7776533221111111111 467899999973
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM 245 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~ 245 (439)
+++|-++.+| |++||..+.+.+..++.+.+ . .........+.|.++.+++ .|-..+|++..++.
T Consensus 171 -~lIAWand~G-v~vyd~~~~~~l~~i~~p~~--~-------~R~e~fpphl~W~~~~~LV-IGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 171 -NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ--S-------VRPELFPPHLHWQDEDRLV-IGWGDSVKICSIKK 234 (846)
T ss_pred -cEEEEecCCC-cEEEeccccceeeccCCCCC--C-------CCcccCCCceEecCCCeEE-EecCCeEEEEEEec
Confidence 6777777665 89999999887665543321 1 1112223456777765544 45556777777763
No 311
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.77 E-value=1.4e-05 Score=65.15 Aligned_cols=220 Identities=14% Similarity=0.178 Sum_probs=119.5
Q ss_pred eeeeccccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
+.+.+-...+..|+|+|+ +.++++....+.|...+.+ ++.+.++.-.-.+..-.+++.. ++.++++.-.++.+.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEEE
Confidence 456676667999999997 4567777888888888864 5555444222245678889886 77777766668999999
Q ss_pred EcccCce-e-----eeEEe--c-CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC---CCceeeEEeeccCCCCCCC
Q 013644 87 QIFEDGR-M-----DTKRL--G-KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS---DSATRLFYCSSFSENSKQP 154 (439)
Q Consensus 87 ~~~~~~~-~-----~~~~~--~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~ 154 (439)
++..... + ....+ . .+...+..++|.|.++.++ .+-+.....+|.+.. .............. ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~ 167 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD---DK 167 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH----HT
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeecccccccc---cc
Confidence 8843221 1 11111 1 3456789999999988666 455666667777664 22222221111110 01
Q ss_pred CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 155 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
.....+.+++++|..+++++.+..+..|..+| ..++.+..+........ +...-.+.-.|+|.++|.+.+++.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g------l~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG------LSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC------cccccCCccEEEECCCCCEEEEcC
Confidence 12335789999999888999999999999999 44553332221111000 011123577899999999888886
Q ss_pred CCeEEEE
Q 013644 235 DELVYLF 241 (439)
Q Consensus 235 d~~i~i~ 241 (439)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555544
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=5.5e-06 Score=68.90 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=126.2
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
+|+|..||..+++.+-...+..-.....+..+ +++. .+++++.++.|..||..+++........... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-------~~~- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPI-------SGA- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCG-------GSG-
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccc-------cce-
Confidence 67899999988887765554321222222222 2344 3556689999999999999877666542111 011
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCC-CCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI-SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
.... + ..+++++.++.++.+|..+++.+... ....+ ... ..........+..++.+. ++.
T Consensus 72 ---~~~~--~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 72 ---PVVD--G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP-----------PAG-VRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp ---EEEE--T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSC-----------TCS-TB--SEEEEETTEEEEEETCSE
T ss_pred ---eeec--c-cccccccceeeeEecccCCcceeeeecccccc-----------ccc-cccccCceEecCEEEEEeccCc
Confidence 1111 2 46666778889999999998854321 11000 000 111112222255555554 999
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc--ce------e-eeEEeeCCCCceEEEeCCCCeEEEEecCCCc
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QT------V-KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------v-~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 308 (439)
|..+|+.++ +.+..+...... .. + ..+. + .++ .++.++.++.+.-+|+.+++
T Consensus 134 l~~~d~~tG----------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 134 LVALDPKTG----------------KLLWKYPVGEPRGSSPISSFSDINGSPV-I-SDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp EEEEETTTT----------------EEEEEEESSTT-SS--EEEETTEEEEEE-C-CTT-EEEEECCTSSEEEEETTTTE
T ss_pred EEEEecCCC----------------cEEEEeecCCCCCCcceeeecccccceE-E-ECC-EEEEEcCCCeEEEEECCCCC
Confidence 999999888 333333332211 00 1 2222 2 344 66666667754444999998
Q ss_pred eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 309 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+.... ...+..+ ...++..|+.++.++.|..||+.+++.
T Consensus 195 ~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 195 KLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred EEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 664333 2222221 345677777777999999999988764
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=4.7e-05 Score=60.23 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCc
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGR 105 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 105 (439)
..+++.|+..+.+.--|..++....... -...+.+-+.. -|++++.|+..|.+.+.+.+++......... +.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeeh---hh
Confidence 4677788888999999999887654432 23445554444 4778999999999999999998765433322 22
Q ss_pred eE-EEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 106 VY-KLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 106 v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
|. .....+++. +++.++.|++.+..|.++...+...++
T Consensus 95 vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 95 VKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hccceEEcCCCc-eEEEecCCCcEEEecccccceEEeccc
Confidence 22 233456665 789999999999999999888776554
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.3e-06 Score=79.51 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=112.7
Q ss_pred eeccccceEEEEECCC-------------CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeec---CCCcE
Q 013644 10 LHGHKGCVNAVEFNST-------------GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF---TDDRK 73 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~-------------~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~ 73 (439)
|..|.+.|.-..+.-+ |.+++||+.||+|.|-.+.+.+...++ ....++.+++++|. ...+.
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhh
Confidence 4557777776666544 999999999999999999888776654 45578999999992 12568
Q ss_pred EEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 74 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+++|+..| +.++.-.=-+......+....++|.++.|..+ ++|-+..+| |++||+.+++.+..+......
T Consensus 132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~G-v~vyd~~~~~~l~~i~~p~~~----- 201 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDG-VKVYDTPTRQRLTNIPPPSQS----- 201 (846)
T ss_pred eeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCC-cEEEeccccceeeccCCCCCC-----
Confidence 99999988 77764321111112235566789999999764 677776666 899999998776655433211
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
.....--..+.|.+. ..|+.| ...+|++..++.
T Consensus 202 ~R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDE--DRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCC--CeEEEe-cCCeEEEEEEec
Confidence 111223456788875 355555 334788888884
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.74 E-value=1.5e-08 Score=89.14 Aligned_cols=206 Identities=17% Similarity=0.194 Sum_probs=134.1
Q ss_pred cceEEEEECCCC--CEEEEecCCCeEEEEeCCCCcce-eeeecCCcccEEEEEEeecCCCcEEEEecC----CCcEEEEE
Q 013644 15 GCVNAVEFNSTG--DFLVSGSDDKLVIFWDWKDRREK-FSYLSGHLDNIFQTRIMPFTDDRKIITSSA----DGQVRLGQ 87 (439)
Q Consensus 15 ~~I~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iw~ 87 (439)
..+.|+++.-+. .+++.|..+|.|-+-.+....-- ..+..+|....++++|++. |.+.||+|-. |..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCcccee
Confidence 456777776543 57888999999999887654332 4445688899999999984 6677877743 67899999
Q ss_pred cccC--ceeeeEEecC-CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc-eeeEEeeccCCCCCCCCceeeeEEE
Q 013644 88 IFED--GRMDTKRLGK-HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 88 ~~~~--~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
+.+. .......+.+ ......+++|..+.+ ++.+|.....+.++|++.... ...+ ....+..+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv-------------nTk~vqG~ 201 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV-------------NTKYVQGI 201 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh-------------hhhhcccc
Confidence 9875 2221122222 345566899997776 677898888999999984321 1111 12236667
Q ss_pred eecCCCCcEEEEeecCceEEEEe-CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEe-c-CCeEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYD-IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-N-DELVY 239 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~-~-d~~i~ 239 (439)
.+.|-.++++++-. ||.|.+|| .++.+ .++...... .......+..++|.|.. -++++. . .+.|+
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~--~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRN--ENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhhhc--------cHHHHHhhC--CCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 77886557776655 99999999 44332 111111100 01112358899999864 344444 3 77999
Q ss_pred EEEccCC
Q 013644 240 LFEKNMG 246 (439)
Q Consensus 240 i~d~~~~ 246 (439)
++++...
T Consensus 271 lydi~~v 277 (783)
T KOG1008|consen 271 LYDICVV 277 (783)
T ss_pred Eeccccc
Confidence 9998654
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.6e-06 Score=72.33 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred cceeeeeeccccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
|+..+.+.+|...|..++|||..+ ++..++.+..|+|.|+.+...+..+ ..+ ..+++++|.-. +..+|..|..+|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDld-e~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLD-ERHVIYAGLQNGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccC-CcceeEEeccCce
Confidence 444557788999999999999876 7888999999999999998766554 455 78999999872 4567888888999
Q ss_pred EEEEEcccCce
Q 013644 83 VRLGQIFEDGR 93 (439)
Q Consensus 83 i~iw~~~~~~~ 93 (439)
|.+||++..+.
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999987654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.70 E-value=5.5e-05 Score=72.53 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=128.2
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc----
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL---- 133 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~---- 133 (439)
..|.++.|.. +...++.+...|.|.+-|..+.... ....-...|.+++|+||+. +++..+..+++.+-.-
T Consensus 69 ~~i~s~~fl~--d~~~i~v~~~~G~iilvd~et~~~e---ivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLA--DTNSICVITALGDIILVDPETLELE---IVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEec--ccceEEEEecCCcEEEEccccccee---eeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccc
Confidence 5899999998 9999999999999999988665443 2334557899999999998 5666666666665432
Q ss_pred cCCCce-------------------eeEEeeccCCCCCCCC----------ceeeeEEEeecCCCCcEEEEe-----ecC
Q 013644 134 RSDSAT-------------------RLFYCSSFSENSKQPM----------NSIRLNAIVIDPRNPNYFAVG-----GSD 179 (439)
Q Consensus 134 ~~~~~~-------------------~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~-----~~d 179 (439)
-..+.+ ..+...........+. -...=.++.|--+| .++|+. ...
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGT 221 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCc
Confidence 111111 0111000000000000 01112358888877 788873 233
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe----cCCeEEEEEccCCCCCCCCCCC
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY----NDELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~i~d~~~~~~~~~~~~~ 255 (439)
..|++||-. +.+-.. -....+.-.+++|-|.|.++++- +++.|.+|.-+.-.
T Consensus 222 RkirV~drE-g~Lns~---------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-------- 277 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNST---------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-------- 277 (1265)
T ss_pred eeEEEeccc-chhhcc---------------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc--------
Confidence 789999977 332111 01223345678999999988875 36779999865421
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEE---eCCCCeEEEEecCCC
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS---GSDCGHLFIWKKKGG 307 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~ 307 (439)
... ..+.-......+..++ |..++..||. ......|++|-+.+.
T Consensus 278 -----hg~--f~l~~p~de~~ve~L~-Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 278 -----HGE--FVLPFPLDEKEVEELA-WNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred -----ccc--cccCCcccccchheee-ecCCCCceeeeecccccceEEEEEecCe
Confidence 001 1111122222378888 7889999887 455566999987764
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=9.9e-06 Score=74.51 Aligned_cols=220 Identities=15% Similarity=0.203 Sum_probs=133.4
Q ss_pred EEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC-----cEEEEEccCCCc
Q 013644 64 RIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG-----FVQHFDLRSDSA 138 (439)
Q Consensus 64 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~ 138 (439)
+|++ .+..++.|+.+|.|.+.+- .......+..+...+...-+.-++..+|++.+.|+ .|++|+++.-+.
T Consensus 30 c~~s--~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSS--STGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcC--CCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 4566 7889999999999887753 22222445566666333334444444666766654 489999976421
Q ss_pred ---eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 139 ---TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 139 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
...+..+...+ ...+....++.+++.+.+- ..+|+|-.+|.|..+.-.-.+-.. ..........
T Consensus 105 n~sP~c~~~~ri~~-~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrg-----------sr~~~~~~~~ 171 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFT-IKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRG-----------SRQDYSHRGK 171 (933)
T ss_pred CCCcceeeeeeeec-cCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccc-----------cceeeeccCC
Confidence 11221111111 1112245668888888875 899999999999988533211000 0111223457
Q ss_pred ccEEEEEEccCCCE-EEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEEe
Q 013644 216 IHITGLAYSNTSEL-LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSG 293 (439)
Q Consensus 216 ~~i~~~~~~~~~~~-l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~~ 293 (439)
.+|+.+++..+++. +.++....|.+|.+.... .....+..+... +.|.. +++... +++++
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~---------------p~~~~ld~~G~~--lnCss-~~~~t~qfIca~ 233 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRT---------------PSLKVLDNNGIS--LNCSS-FSDGTYQFICAG 233 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCC---------------cceeeeccCCcc--ceeee-cCCCCccEEEec
Confidence 78999999998876 556668889999987431 123345555544 77777 454433 44444
Q ss_pred CCCCeEEEEecCCCceeEeec-ccccceE
Q 013644 294 SDCGHLFIWKKKGGKLVRLMV-GDRHVVN 321 (439)
Q Consensus 294 ~~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 321 (439)
+ ..+.+|+.....+-..+. +|.....
T Consensus 234 ~--e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 234 S--EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred C--ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 3 579999988666666666 6655433
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=1.8e-05 Score=66.02 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=121.1
Q ss_pred EEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec-CCCCcEEEEeecCceEEEE
Q 013644 107 YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVY 185 (439)
Q Consensus 107 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~ 185 (439)
.+++|.+....++++--..+.|..|+..+++... +.. . ....+++. +++ . ++.+... .+.++
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~------------~-~~~G~~~~~~~g-~-l~v~~~~-~~~~~ 65 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL------------P-GPNGMAFDRPDG-R-LYVADSG-GIAVV 65 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES------------S-SEEEEEEECTTS-E-EEEEETT-CEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec------------C-CCceEEEEccCC-E-EEEEEcC-ceEEE
Confidence 3678888555578788889999999998875433 211 1 15667777 553 4 4444444 45566
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C--------CeEEEEEccCCCCCCCCCCCc
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D--------ELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d--------~~i~i~d~~~~~~~~~~~~~~ 256 (439)
|..+++... +.............+.+++.|+|++.++.. . +.++.++.. +
T Consensus 66 d~~~g~~~~----------~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---------- 124 (246)
T PF08450_consen 66 DPDTGKVTV----------LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---------- 124 (246)
T ss_dssp ETTTTEEEE----------EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S----------
T ss_pred ecCCCcEEE----------EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C----------
Confidence 888765211 111100011456788999999999887753 2 457777765 2
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCCCCceEE-EeCCCCeEEEEecCCCce-------eEeecccccceEEEeecCC
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKL-------VRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~s~~ 328 (439)
+.......- .....++ |+|+++.|+ +-+..+.|..|++..... ...+....+..-.+++..+
T Consensus 125 ------~~~~~~~~~---~~pNGi~-~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 125 ------KVTVVADGL---GFPNGIA-FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp ------EEEEEEEEE---SSEEEEE-EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred ------eEEEEecCc---ccccceE-ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence 122222221 1267788 899998765 667788999999863221 1222222234788999999
Q ss_pred CcEEEEEecCCeEEEeccCCC
Q 013644 329 IPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw~~~~~ 349 (439)
|++.++.-..+.|.+++.++.
T Consensus 195 G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp S-EEEEEETTTEEEEEETTSC
T ss_pred CCEEEEEcCCCEEEEECCCcc
Confidence 998888878899999998843
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.68 E-value=6.6e-07 Score=82.38 Aligned_cols=184 Identities=18% Similarity=0.244 Sum_probs=130.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCc
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGR 105 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 105 (439)
+..++.|+-...+..+|+.+.+..... .-....|+-++. +++.+.+|...|+|.+-|.++.+.+ +.+..|++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~i--ht~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETI--HTFDAHSGS 219 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe----cCcEEEeecccceEEeecCCcCcee--eeeeccccc
Confidence 445677777777888888877654443 222334655555 6789999999999999999877665 668999999
Q ss_pred eEEEEEccCCCcEEEEeCC---------CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 106 VYKLAVEPGSPYIIYSCGE---------DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
|..+.. .|+ +|+++|. |..|++||++..+.+.-+... . .-.-+.|+|.-...++++
T Consensus 220 iSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-----------~-~P~flrf~Psl~t~~~V~ 284 (1118)
T KOG1275|consen 220 ISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-----------Y-GPQFLRFHPSLTTRLAVT 284 (1118)
T ss_pred eeeeec--cCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc-----------c-CchhhhhcccccceEEEE
Confidence 987765 454 6777764 567899999987665444321 1 124467888777889999
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
+..|...+-|..+... .+.. ..........+..+.+++++..++.+. +|.|.+|.
T Consensus 285 S~sGq~q~vd~~~lsN-------P~~~----~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 285 SQSGQFQFVDTATLSN-------PPAG----VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ecccceeeccccccCC-------Cccc----eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999999998543220 0010 111123345599999999999999997 99999998
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.5e-07 Score=76.61 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=107.4
Q ss_pred EEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc---eeeeEEecCCCCce
Q 013644 30 VSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG---RMDTKRLGKHQGRV 106 (439)
Q Consensus 30 ~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~v 106 (439)
++.+.+..|-+-|+.++.. +.+ ...+.|.++.|.. .+++++.|+.+|.|...|++... .-....+ -|...|
T Consensus 228 fs~G~sqqv~L~nvetg~~--qsf-~sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--QSF-QSKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccc--ccc-ccchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence 4445567788888888743 222 3667899999997 89999999999999999998651 1122233 388999
Q ss_pred EEEEEcc-CCCcEEEEeCCCCcEEEEEccCCCc---eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceE
Q 013644 107 YKLAVEP-GSPYIIYSCGEDGFVQHFDLRSDSA---TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA 182 (439)
Q Consensus 107 ~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 182 (439)
+++.... +++ .|++.+-+|.|++||.+.-+. +..+..+.. ...-.-+..++.. ..+++++.|...
T Consensus 302 tslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN---------~~a~l~~~v~~ee-g~I~s~GdDcyt 370 (425)
T KOG2695|consen 302 TSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN---------LSAYLPAHVKEEE-GSIFSVGDDCYT 370 (425)
T ss_pred hhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccc---------ccccccccccccc-ceEEEccCeeEE
Confidence 9998877 555 566888999999999997666 444433211 1112223445554 578889999999
Q ss_pred EEEeCcCCcccCCCC
Q 013644 183 RVYDIRKCHWYSPIS 197 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~ 197 (439)
+||.++.++++..++
T Consensus 371 RiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEecccCceeeccC
Confidence 999999998765543
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.64 E-value=5.9e-05 Score=66.48 Aligned_cols=305 Identities=14% Similarity=0.126 Sum_probs=153.4
Q ss_pred CCCCCEEEEe---------cCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 23 NSTGDFLVSG---------SDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 23 s~~~~~l~t~---------~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
|||+++++.. +..+.+.|+|+.+++.... ......+....|+| +|+.++... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--~~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--TPPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--S-EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--cCCccccccceeec--CCCeeEEEe-cCceEEEECCCCCe
Confidence 6888887763 2346789999988653322 22256788899999 999998875 56899998866643
Q ss_pred eeeEEecC-------C---------CCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 94 MDTKRLGK-------H---------QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 94 ~~~~~~~~-------~---------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
... +..+ - -+.-..+-|+||++++++.--.+..|..+.+........ . .
T Consensus 76 ~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----~----------y 140 (353)
T PF00930_consen 76 TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----Q----------Y 140 (353)
T ss_dssp EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----S----------S
T ss_pred EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----c----------C
Confidence 321 1111 0 122356889999998776665666555554432111000 0 0
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEec--
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-- 234 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-- 234 (439)
-.+..+.+-.-|... ..-.+.++|+.+++.. .+............+..+.|.++++ +++.-.
T Consensus 141 p~~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~----------~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR 205 (353)
T PF00930_consen 141 PEVESIRYPKAGDPN-----PRVSLFVVDLASGKTT----------ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNR 205 (353)
T ss_dssp -EEEEEE--BTTS--------EEEEEEEESSSTCCC----------EE---HHHHTSSEEEEEEEEEETTEEEEEEEEET
T ss_pred CcccccccCCCCCcC-----CceEEEEEECCCCcEE----------EeeeccccCCCccCcccceecCCCcEEEEEEccc
Confidence 013333332112111 1124677888776532 1111111133467789999999998 444432
Q ss_pred -C--CeEEEEEccCCCCCCCCCCCcccccccccceeEe-CCCCcc-eeeeEEee-CCCCceEEEeCCCC--eEEEEecCC
Q 013644 235 -D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQ-TVKGVNFF-GPNDEYVMSGSDCG--HLFIWKKKG 306 (439)
Q Consensus 235 -d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~~-s~~~~~l~~~~~dg--~i~iwd~~~ 306 (439)
. ..+.++|..++. ....+. ...... ......++ ..+..++.....+| .|.+++...
T Consensus 206 ~q~~~~l~~~d~~tg~----------------~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 206 DQNRLDLVLCDASTGE----------------TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp TSTEEEEEEEEECTTT----------------CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred CCCEEEEEEEECCCCc----------------eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 2 256666765541 111111 111111 11233323 23445555555666 456666665
Q ss_pred CceeEeecccccceEE-EeecCCCcEEE-EEecC--CeEEEec--cC-CCCCCCCCCchhhhhhhhccccCcceEEEeCC
Q 013644 307 GKLVRLMVGDRHVVNQ-LEPHPHIPMFA-TCGIE--KTVKLWA--PM-PTDFPPLPDNAEKIMKANKQGREDHSRITLTP 379 (439)
Q Consensus 307 ~~~~~~~~~h~~~v~~-~~~s~~~~~l~-s~~~d--g~i~iw~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 379 (439)
+... .+....-.|.. +.|+++++.|. ++..+ +.-.+|. +. ++.+..+.. .......+++|+
T Consensus 270 ~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-----------~~~~~~~~~~Sp 337 (353)
T PF00930_consen 270 GKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-----------EDGDHYSASFSP 337 (353)
T ss_dssp SEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-----------TSSTTEEEEE-T
T ss_pred ccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-----------CCCCceEEEECC
Confidence 5543 44444455644 67888877543 44432 3444554 44 333322221 111115889999
Q ss_pred CcEEEEEEecc
Q 013644 380 DVIMHVLRLQR 390 (439)
Q Consensus 380 dg~v~~w~~~~ 390 (439)
||...+-...+
T Consensus 338 dg~y~v~~~s~ 348 (353)
T PF00930_consen 338 DGKYYVDTYSG 348 (353)
T ss_dssp TSSEEEEEEES
T ss_pred CCCEEEEEEcC
Confidence 99887765543
No 323
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.64 E-value=4.9e-05 Score=65.06 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=51.0
Q ss_pred eeeEEeeCCCCceEEE-----eCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCC------------
Q 013644 277 VKGVNFFGPNDEYVMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK------------ 339 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------------ 339 (439)
+..=.||.|||..|.. ++.+..|.-+|..+++....... .....+..++||++++-=+.|.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---------------
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 4555568899986654 23345677788888765433222 2344566688998887555442
Q ss_pred ----eEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 340 ----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 340 ----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
-|.++++..+....+..|........-.......-++|||||+-.++...
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 45566776555433333332111111011123467899999999988753
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=4.7e-06 Score=76.48 Aligned_cols=110 Identities=7% Similarity=0.058 Sum_probs=83.9
Q ss_pred eEEEEECCCCCEEEEec----CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 17 VNAVEFNSTGDFLVSGS----DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~----~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
-+-..|+|...+||+++ ..|.|.||- +++++.... ...-.+++++|+| ..-.|+.|-.-|.+.+|...+.+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh--HHHHHhhccccceeEEEecCCce
Confidence 34467999999999875 458899985 455433222 1223456799999 77788888888999999986654
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.- .....|+.+|..+.|+++|. .++++..-|.|.+|...
T Consensus 93 ~h--tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 TH--TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ee--eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 43 33557999999999999998 67799999999999876
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.3e-05 Score=72.15 Aligned_cols=197 Identities=13% Similarity=0.174 Sum_probs=127.9
Q ss_pred EECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCccc-EEEEEEeecCCCcEEEEecCCC-----cEEEEEcccCc--
Q 013644 21 EFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDN-IFQTRIMPFTDDRKIITSSADG-----QVRLGQIFEDG-- 92 (439)
Q Consensus 21 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~-- 92 (439)
+|++.+..+|.|+.+|.|.+.+- ......-+..+... |..+.... ...+|++.+.|+ .+++|+++.-+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 46678889999999998877763 33332334556555 44444433 446888877765 48999986431
Q ss_pred ----eeeeEEecC-----CCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc--CCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 93 ----RMDTKRLGK-----HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR--SDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 93 ----~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
......+.. ...++.+++.+.+-+ .+|.|-.+|.|..+.-. .....+...... ...+|+
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~---------~~~pIT 175 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHR---------GKEPIT 175 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeecc---------CCCCce
Confidence 111112222 356788999999876 68899999999988422 111111111111 356799
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
.+++..++...+++++ ...|.+|.+.... +.......+.....|..+++....++++....+.+|
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~--------------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY 240 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT--------------PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFY 240 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCC--------------cceeeeccCCccceeeecCCCCccEEEecCceEEEE
Confidence 9999888755344444 3578999988422 122334778888999999988777888888899999
Q ss_pred EccCC
Q 013644 242 EKNMG 246 (439)
Q Consensus 242 d~~~~ 246 (439)
+....
T Consensus 241 ~sd~~ 245 (933)
T KOG2114|consen 241 DSDGR 245 (933)
T ss_pred cCCCc
Confidence 97643
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.9e-05 Score=71.12 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=90.1
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
|...|.--+++..+++++.|+.-|.+.+|+-..+........+-.+.+..+..++ +..++|.|+..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhccC
Confidence 4455666667778999999999999999998777644433334455666677787 78888888999999999886633
Q ss_pred eeeeEE----ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 93 RMDTKR----LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 93 ~~~~~~----~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
...... -..|...|++++|++++.. +++|...|.|..-.+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEech
Confidence 221111 1247889999999999984 77999999999888776
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=6.6e-08 Score=88.51 Aligned_cols=198 Identities=13% Similarity=0.174 Sum_probs=135.0
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
..+..|....+|++|+.+.++ |+.|+..|.|++|++.+|.......+ |...++-+.-+.+|..+|.++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~nc-----------H~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNC-----------HQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccccccc-----------cccccccccccCCcceeeeec
Confidence 346678889999999998874 77999999999999999998887777 788899999888885555555
Q ss_pred ecCc-eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCC
Q 013644 177 GSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 177 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 254 (439)
+... -..+|++..-- .+++. -..-.++.|+.....-+.|. .....+||+.++
T Consensus 1163 s~S~PlsaLW~~~s~~--------------~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-------- 1216 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTG--------------GPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTC-------- 1216 (1516)
T ss_pred cccCchHHHhcccccc--------------Ccccc----ccccceeehhhhHHHHHhcccccceEEEecccC--------
Confidence 4444 56789987521 11111 12245677877655555554 678899999987
Q ss_pred Cccccccccccee-EeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEE
Q 013644 255 SPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 333 (439)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 333 (439)
....+ +.+......-..++.|+|+..+++- || .+||.+..+.++.|......+ .-.|+|.|.-++
T Consensus 1217 --------~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1217 --------SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVI 1282 (1516)
T ss_pred --------cHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEE
Confidence 23333 2222221122233338999998873 44 489998887777776444222 235899999887
Q ss_pred EEecCCeEEEeccCCCCC
Q 013644 334 TCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 334 s~~~dg~i~iw~~~~~~~ 351 (439)
.-+ -|||+.+.++
T Consensus 1283 INS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1283 INS-----EIWDMRTFKL 1295 (1516)
T ss_pred eec-----hhhhhHHHHH
Confidence 766 4899877654
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=2.3e-05 Score=74.96 Aligned_cols=213 Identities=11% Similarity=0.136 Sum_probs=128.5
Q ss_pred CCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceE
Q 013644 103 QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA 182 (439)
Q Consensus 103 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 182 (439)
.+.|.++.|..+... ++.+...|.|.+-|..+......-. -...|.+++|+|+. ..++..+..+++
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~eivg~------------vd~GI~aaswS~De-e~l~liT~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEIVGN------------VDNGISAASWSPDE-ELLALITGRQTL 133 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceeeeee------------ccCceEEEeecCCC-cEEEEEeCCcEE
Confidence 368899999988875 5577788888888887765433322 24569999999987 788877777776
Q ss_pred EEEeCcCCcccCCCCC---------------CCCccccc-------------cccccc--CCCccEEEEEEccCCCEEEE
Q 013644 183 RVYDIRKCHWYSPISS---------------DTPVDTFC-------------PRHLIG--KNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~~---------------~~~~~~~~-------------~~~~~~--~~~~~i~~~~~~~~~~~l~~ 232 (439)
.+-.- +...+..... ......+. ...... .....=+++.|--||+++|+
T Consensus 134 l~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV 212 (1265)
T KOG1920|consen 134 LFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV 212 (1265)
T ss_pred EEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence 65432 1111111000 00000000 000000 01222346899999999988
Q ss_pred e-----cC-CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe---CCCCeEEEEe
Q 013644 233 Y-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG---SDCGHLFIWK 303 (439)
Q Consensus 233 ~-----~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~---~~dg~i~iwd 303 (439)
. .+ ..|++||-+... ........ ..-.++. |-|.|..+++- +.|+.|.+|.
T Consensus 213 s~~~~~~~~RkirV~drEg~L------------ns~se~~~-------~l~~~Ls-WkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDREGAL------------NSTSEPVE-------GLQHSLS-WKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred EEEeccCCceeEEEecccchh------------hcccCccc-------cccccee-ecCCCCeEeeeeecCCCCcEEEEe
Confidence 3 35 799999976210 00011111 1234556 78999999876 3456899998
Q ss_pred cCC---CceeEeecccccceEEEeecCCCcEEEE---EecCCeEEEeccCCCC
Q 013644 304 KKG---GKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPTD 350 (439)
Q Consensus 304 ~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~~~dg~i~iw~~~~~~ 350 (439)
-+. |+....+......|..++|+.++..||+ ......|++|-+.+..
T Consensus 273 rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 273 RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 542 2222223333445999999999999887 5555569999887643
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.55 E-value=2.3e-05 Score=70.61 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=89.3
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
|...|.--++.. .+++++.|+.-|.+.+|+-..+.... ....+..+.+..+..+++. +++|+|+..|.|.++-+..
T Consensus 32 ~~~~v~lTc~ds--t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDA--TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeec--CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhc
Confidence 344455555555 88999999999999999976654432 2233344555566677766 4788999999999998887
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
............. ..|+..|++++|++++ ..+++|...|.|..-.+..
T Consensus 108 ~~p~~~~~~t~~d-----~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELPRDLDYVTPCD-----KSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCCcceeecccc-----ccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 5444333322211 1168899999999987 8999999999999988876
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.51 E-value=5.4e-05 Score=66.69 Aligned_cols=287 Identities=12% Similarity=0.084 Sum_probs=142.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc-----
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE----- 90 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~----- 90 (439)
.|+.+.|+++..-|+.|...|.|.||.+...+.-.. .-...-..+.+.+. ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~--------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRF--------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCcccccc--------cccCCCcceEEehhhCCcc
Confidence 589999999988899999999999998765432210 00011111222211 00111122233321
Q ss_pred --CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC-
Q 013644 91 --DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP- 167 (439)
Q Consensus 91 --~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (439)
....+...+....++|++++.+.-| +++.|..+|.+.+.|++....+..-.... ..........++++.|..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEE
T ss_pred cccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEE
Confidence 1123334455568999999998777 78999999999999998776665533322 111111344566777651
Q ss_pred ----C--CCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccccccCCCccEEEEE-EccC-------------
Q 013644 168 ----R--NPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-YSNT------------- 226 (439)
Q Consensus 168 ----~--~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~------------- 226 (439)
+ ..-.+++|+..|.+.+|.+.- ..- .. ..........+..+|..+. ++.+
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g--------~f-~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKILPSSNG--------RF-SVQFAGATTNHDSPILSIIPINADTGESALATISAMQ 217 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG---------E-EEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEEecCCCC--------ce-EEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh
Confidence 1 124788999999999998752 110 00 0001111123344444443 2111
Q ss_pred --------CCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee----CCCCceEEEeC
Q 013644 227 --------SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF----GPNDEYVMSGS 294 (439)
Q Consensus 227 --------~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----s~~~~~l~~~~ 294 (439)
..+++++++..++++...+. +...... ........+.+. ...+..|++-.
T Consensus 218 ~l~~g~~i~g~vVvvSe~~irv~~~~~~----------------k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~ 279 (395)
T PF08596_consen 218 GLSKGISIPGYVVVVSESDIRVFKPPKS----------------KGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLF 279 (395)
T ss_dssp GGGGT----EEEEEE-SSEEEEE-TT-------------------EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred ccccCCCcCcEEEEEcccceEEEeCCCC----------------cccceee--ccccccceEEEEeecccCCceEEEEEE
Confidence 12677778999999987654 1222221 111113333322 23567788888
Q ss_pred CCCeEEEEecCCCceeEeecccc----cceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 295 DCGHLFIWKKKGGKLVRLMVGDR----HVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 295 ~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
.+|.|++|.+..-+.+..+.-+. ..+....++++|..++-.+.. .+.++.+
T Consensus 280 ~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 280 NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 99999999999988887766432 345567778999977666543 4444443
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=5.4e-05 Score=63.54 Aligned_cols=278 Identities=11% Similarity=0.060 Sum_probs=151.5
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC----------CCcEEEEEcccCceeeeEEecCC-C-
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA----------DGQVRLGQIFEDGRMDTKRLGKH-Q- 103 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~~-~- 103 (439)
+.+.|.|.++++.+-.+-.+... .+..+| +++.++++.. .-.|.+||..+-.......+... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---NVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---EEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecccCC---ceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 47999998888765554434433 356788 9998887532 34689999988765544444431 1
Q ss_pred ---CceEEEEEccCCCcEEEE-eCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC
Q 013644 104 ---GRVYKLAVEPGSPYIIYS-CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 104 ---~~v~~i~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
.....++++.+++++++. .+--..|.+.|+..++....+... -|...-|.++.-|.+-+.|
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------------GC~~iyP~~~~~F~~lC~D 156 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------------GCWLIYPSGNRGFSMLCGD 156 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------------SEEEEEEEETTEEEEEETT
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------------CEEEEEecCCCceEEEecC
Confidence 122356788888865432 344567889999988877766531 1222233344568888899
Q ss_pred ceEEEEeCcC-CcccCCCCCCCCcccccccccccCCCccEEEEEEccC-CCEEEEecCCeEEEEEccCCCCCCCCCCCcc
Q 013644 180 EYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 180 g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
|.+.-..+.. ++... . ....+.......+..-++... +.++..+-+|.|+-.|+....... ..++
T Consensus 157 Gsl~~v~Ld~~Gk~~~---------~-~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~---~~~~ 223 (342)
T PF06433_consen 157 GSLLTVTLDADGKEAQ---------K-STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF---GKPW 223 (342)
T ss_dssp SCEEEEEETSTSSEEE---------E-EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE---EEEE
T ss_pred CceEEEEECCCCCEeE---------e-eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc---cCcc
Confidence 9998888873 33210 0 001111111212223334433 455556668888888876542100 0000
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCC-ceEEEeC--C-----C--CeEEEEecCCCceeEeecccccceEEEeecC
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGS--D-----C--GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 327 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-~~l~~~~--~-----d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 327 (439)
.+..... ....-.+....-++ +++.. ++.+.-. . | ..|.++|+.+++.+..+.. ..++.+|+.+.
T Consensus 224 ~~~t~~e---~~~~WrPGG~Q~~A-~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsq 298 (342)
T PF06433_consen 224 SLLTDAE---KADGWRPGGWQLIA-YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQ 298 (342)
T ss_dssp ESS-HHH---HHTTEEE-SSS-EE-EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEES
T ss_pred cccCccc---cccCcCCcceeeee-eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEcc
Confidence 0000000 00000011122233 34433 3333221 1 1 2588889999999988874 34678999998
Q ss_pred CCc-EEEEE-ecCCeEEEeccCCCCC
Q 013644 328 HIP-MFATC-GIEKTVKLWAPMPTDF 351 (439)
Q Consensus 328 ~~~-~l~s~-~~dg~i~iw~~~~~~~ 351 (439)
+.+ +|++. ..++.+.+||..++++
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 776 66554 4589999999998875
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=3.1e-06 Score=78.18 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=113.0
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC---------CCcEEE
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---------DGQVRL 85 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~i 85 (439)
+.|+-++. +++++.+|...|+|.+-|..+.+.+.+ +..|.+.|.++.. .|++|++++. |..|+|
T Consensus 178 ~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht-~~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 178 SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT-FDAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred CceEEEEe--cCcEEEeecccceEEeecCCcCceeee-eeccccceeeeec----cCCeEEEeecccccccccccchhhh
Confidence 34555554 488999999999999999999887766 4799999988776 5788988875 567899
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-c-eeeEEeeccCCCCCCCCceeeeEEE
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-A-TRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
||++..+.+.. +.-+.++ .-+.|+|.-...+++++..|...+-|..+-. + ........ ....+.++
T Consensus 251 YDLRmmral~P--I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p---------~~s~i~~f 318 (1118)
T KOG1275|consen 251 YDLRMMRALSP--IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP---------NGSGISAF 318 (1118)
T ss_pred hhhhhhhccCC--cccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc---------CCCcceeE
Confidence 99988776543 3333333 5577888766678889999999998843321 1 11111111 23448999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCc
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIR 188 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~ 188 (439)
++++.+ ..++.|..+|.|.+|.-+
T Consensus 319 DiSsn~-~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 319 DISSNG-DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred EecCCC-ceEEEecccCcEeeecCC
Confidence 999976 899999999999999833
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=9.4e-05 Score=67.37 Aligned_cols=212 Identities=9% Similarity=-0.026 Sum_probs=110.8
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeC--CC-CcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG--ED-GFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
.+.+.+.|..+.+......+. +....++++|+++++++++. +. .++...+.........+..
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni------------ 278 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI------------ 278 (635)
T ss_pred eEEEEEEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch------------
Confidence 345666666654443332232 24456788999986655542 21 2233333222111111100
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcC----C-cccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEE
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK----C-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 231 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 231 (439)
..+ -++.++| ++... .++.|.+.|.++ + +.... -.-......+.++|||++++
T Consensus 279 -~~i--ea~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~y----------------IPVGKsPHGV~vSPDGkyly 336 (635)
T PRK02888 279 -ARI--EEAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRY----------------VPVPKNPHGVNTSPDGKYFI 336 (635)
T ss_pred -HHH--HHhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEE----------------EECCCCccceEECCCCCEEE
Confidence 000 1233445 44444 256899999887 1 21110 11234567889999999988
Q ss_pred Eec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC---
Q 013644 232 SYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--- 306 (439)
Q Consensus 232 ~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--- 306 (439)
+++ +..+.++|+.+........+.+++. ......-... ....+ |+++|+...+---|..|..|++..
T Consensus 337 VanklS~tVSVIDv~k~k~~~~~~~~~~~~----vvaevevGlG---PLHTa-FDg~G~aytslf~dsqv~kwn~~~a~~ 408 (635)
T PRK02888 337 ANGKLSPTVTVIDVRKLDDLFDGKIKPRDA----VVAEPELGLG---PLHTA-FDGRGNAYTTLFLDSQIVKWNIEAAIR 408 (635)
T ss_pred EeCCCCCcEEEEEChhhhhhhhccCCccce----EEEeeccCCC---cceEE-ECCCCCEEEeEeecceeEEEehHHHHH
Confidence 886 8999999998753221111111110 0111111111 23344 788888777888899999999876
Q ss_pred -------CceeEeecccccc-----eEEEeecCCCcEEEEEe
Q 013644 307 -------GKLVRLMVGDRHV-----VNQLEPHPHIPMFATCG 336 (439)
Q Consensus 307 -------~~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~ 336 (439)
...+..+.-|-.+ ...=.-.|+|++|++..
T Consensus 409 ~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 409 AYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred HhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 2333334333221 11122367888888764
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=0.00038 Score=55.27 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=75.2
Q ss_pred eeeeccccceEEEEECC-------------------CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeec
Q 013644 8 GKLHGHKGCVNAVEFNS-------------------TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~-------------------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~ 68 (439)
-.+-.|.+.+.++.+-. -|++++.|+..|.+.+-+.+++.+...+....+-.+.. ...+
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~- 103 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDF- 103 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce-EEcC-
Confidence 33455777776665422 25678889999999999999997766543222222222 2334
Q ss_pred CCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC
Q 013644 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 69 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
++.++..++.|++....|.++...+...... .....+-+..|.... |+.+...|.+.--..+..
T Consensus 104 -~~glIycgshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 104 -DGGLIYCGSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPY 167 (354)
T ss_pred -CCceEEEecCCCcEEEecccccceEEecccC--CceeccceecCCCce-EEEEeccceEEEEccCCC
Confidence 8999999999999999999887776442222 222233444552222 344555555554444433
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=3.4e-05 Score=68.41 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=89.0
Q ss_pred cceeeeeeccccceEEEEECC-CCCEEEEe----cCCCe----EEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCc
Q 013644 4 INLCGKLHGHKGCVNAVEFNS-TGDFLVSG----SDDKL----VIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDR 72 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~-~~~~l~t~----~~dg~----i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 72 (439)
++++..++...++ .++.||. +...+.|. +.+|. -.+|++...+ .+..........|.+++++| +.+
T Consensus 196 lEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp--~E~ 272 (545)
T PF11768_consen 196 LEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP--SED 272 (545)
T ss_pred EEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc--ccc
Confidence 4555555543343 6788887 33444442 33443 3456665443 22222236778999999999 999
Q ss_pred EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceee
Q 013644 73 KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRL 141 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 141 (439)
.|+.|+.||+|.+||...+... .....-..+.++|+|+|. ++++|+..|.+.+||+.-......
T Consensus 273 kLvlGC~DgSiiLyD~~~~~t~----~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGVTL----LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred eEEEEecCCeEEEEEcCCCeee----eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCcccee
Confidence 9999999999999998655332 223445678999999998 788999999999999886544333
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.39 E-value=0.001 Score=56.67 Aligned_cols=246 Identities=16% Similarity=0.159 Sum_probs=130.6
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEE-----
Q 013644 24 STGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKR----- 98 (439)
Q Consensus 24 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----- 98 (439)
..++.|+.|..+| +.+++.......... .+...|..+...| +-+.|++-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899998888 899998443333333 2334499999998 777776654 4999999987544332110
Q ss_pred -------ecCCCCceEEEE--EccCCCcEEEEeCCCCcEEEEEccCCCce--eeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 99 -------LGKHQGRVYKLA--VEPGSPYIIYSCGEDGFVQHFDLRSDSAT--RLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 99 -------~~~~~~~v~~i~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
.......+...+ -...+...+ .......|.+|........ ..+.... -...+.+++|.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L-~va~kk~i~i~~~~~~~~~f~~~~ke~~---------lp~~~~~i~~~~ 148 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRL-CVAVKKKILIYEWNDPRNSFSKLLKEIS---------LPDPPSSIAFLG 148 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEE-EEEECCEEEEEEEECCcccccceeEEEE---------cCCCcEEEEEeC
Confidence 111223344444 122333334 3334458888888764211 1222221 134578888884
Q ss_pred CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCC
Q 013644 168 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 247 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 247 (439)
+.++.|..+ ...+.|+.++..............+ ........++..+. -+++.+|++.++ .-...|....
T Consensus 149 ---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~e~Ll~~~~-~g~fv~~~G~- 218 (275)
T PF00780_consen 149 ---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSF---KSRNSSSKPLGIFQ-LSDNEFLLCYDN-IGVFVNKNGE- 218 (275)
T ss_pred ---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchh---hhcccCCCceEEEE-eCCceEEEEecc-eEEEEcCCCC-
Confidence 567777654 5788899876543222111110000 00011122233333 344577766533 3333333221
Q ss_pred CCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc
Q 013644 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
.. + ...+.-.. ....+.+ ...||++.+. +.|.||++.++++++.+...
T Consensus 219 ~~-------------r-~~~i~W~~---~p~~~~~---~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 219 PS-------------R-KSTIQWSS---APQSVAY---SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cC-------------c-ccEEEcCC---chhEEEE---ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 00 0 11222111 1445553 2357777666 55999999999998888754
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.36 E-value=0.0012 Score=58.25 Aligned_cols=271 Identities=12% Similarity=0.070 Sum_probs=134.4
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCC----------------cccEEEEEEeecCCCcEEEEe
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGH----------------LDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~~l~s~ 77 (439)
...+....|||+|+.+|... ++.|.+++..++........+- -+.-..+.|+| |+++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEE
Confidence 56788999999999999875 5789999987764332222220 11235688999 99999876
Q ss_pred cCC-CcEEEEEcccCceeeeEEecCCC---CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 78 SAD-GQVRLGQIFEDGRMDTKRLGKHQ---GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 78 ~~d-g~i~iw~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
..| ..|+.+.+. ...... ..+..+.+-.-|... ..-.+.++|+.+++....-.......
T Consensus 119 ~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~---- 181 (353)
T PF00930_consen 119 RFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNP---- 181 (353)
T ss_dssp EEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHT----
T ss_pred EECCcCCceEEee--------ccCCccccCCcccccccCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCC----
Confidence 543 444444331 111111 134444442222211 01136678888776542221111111
Q ss_pred CCceeeeEEEeecCCCCcEEEEee-cC---ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc-cCC-
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGG-SD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTS- 227 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~- 227 (439)
....+..+.|.+++..+++.-. .+ ..+.++|..++...... .....+--..-....+. +++
T Consensus 182 --~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-----------~e~~~~Wv~~~~~~~~~~~~~~ 248 (353)
T PF00930_consen 182 --QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-----------EETSDGWVDVYDPPHFLGPDGN 248 (353)
T ss_dssp --SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-----------EEESSSSSSSSSEEEE-TTTSS
T ss_pred --CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-----------EecCCcceeeecccccccCCCC
Confidence 2456889999998732333322 22 24666777664421100 00001111111233443 555
Q ss_pred CEEEEec-CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCC----CeE
Q 013644 228 ELLISYN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDC----GHL 299 (439)
Q Consensus 228 ~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~d----g~i 299 (439)
.++.... +| +|++++...+ ..+.+....- .|..+..++++++.| +++..+ ..|
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~-----------------~~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGG-----------------KPRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSS-----------------EEEESS-SSS---EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred EEEEEEEcCCCcEEEEEccccc-----------------ceeccccCce--eecccceEcCCCCEEEEEecCCCCCceEE
Confidence 4444443 55 5666666554 2223332222 366655577777654 455442 356
Q ss_pred EEEecCCCceeEeecccccceEEEeecCCCcEEEEEe
Q 013644 300 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 336 (439)
+.-++..+..+..+......-..+.|||++++++-..
T Consensus 310 Y~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 310 YRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 6666662334445543333336899999999866543
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.35 E-value=0.00074 Score=55.26 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=112.1
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
..+.+-...+..++|.|+.+.++++....+.|..++.. ++.++.+.... ....-.+++..++ .++++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g----------~~D~EgI~y~g~~-~~vl~~ 82 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG----------FGDYEGITYLGNG-RYVLSE 82 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-----------SSEEEEEE-STT-EEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC----------CCCceeEEEECCC-EEEEEE
Confidence 45666667799999999988889889999999888864 67766665432 2346677777654 555555
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCC
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 255 (439)
-.++.+.++++......... .....+. ......++..+-.++|+|.++.|..+. ..-..+|.+..-... ..+.
T Consensus 83 Er~~~L~~~~~~~~~~~~~~---~~~~~~~-l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--~~~~ 156 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDR---ADVQKIS-LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--FDLF 156 (248)
T ss_dssp TTTTEEEEEEE----TT--E---EEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--S--E
T ss_pred cCCCcEEEEEEeccccccch---hhceEEe-cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--ccee
Confidence 56889999988542210000 0000111 011134566799999999876555554 555666666542100 0000
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc---------cceEEEeec
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR---------HVVNQLEPH 326 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~s 326 (439)
....... ....... ..+.++.+-...+++++....+..|..+| .+|+.+..+.-.. ...-.|+|.
T Consensus 157 ~~~~~~~---~~~~~~~--~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 157 VSDDQDL---DDDKLFV--RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp EEE-HHH---H-HT--S--S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ecccccc---cccccee--ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 0000000 0000011 12566674344667888888889999999 5577665543211 246789999
Q ss_pred CCCcEEEEEecCCeEEEe
Q 013644 327 PHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 327 ~~~~~l~s~~~dg~i~iw 344 (439)
++|++.++. .-+...++
T Consensus 231 ~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp TT--EEEEE-TTTEEEEE
T ss_pred CCCCEEEEc-CCceEEEe
Confidence 999765544 55544443
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.0023 Score=59.14 Aligned_cols=287 Identities=10% Similarity=0.077 Sum_probs=149.0
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCc-----ccEE--EEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEE
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL-----DNIF--QTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKR 98 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~-----~~v~--~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 98 (439)
+..+..++.++.|.-.|..+++.+-++-.... ..+. .+... ++..++.++.++.|.-+|.++++.+-...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 34566677789999999999876655422111 0110 11111 22688888899999999999988775544
Q ss_pred ecCCC---CceE-EEEEccCCCcEEEEeC---------CCCcEEEEEccCCCceeeEEeeccCCCCCCCCc---------
Q 013644 99 LGKHQ---GRVY-KLAVEPGSPYIIYSCG---------EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN--------- 156 (439)
Q Consensus 99 ~~~~~---~~v~-~i~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------- 156 (439)
...+. ..+. ...+. ++ +++.++ .++.+..+|..+++..-................
T Consensus 138 ~~~~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred CCCCcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 43321 0011 11222 22 344443 468899999999987766544211100000000
Q ss_pred eeee-EEEeecCCCCcEEEEeecCc------------------eEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc
Q 013644 157 SIRL-NAIVIDPRNPNYFAVGGSDE------------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 217 (439)
Q Consensus 157 ~~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (439)
...+ ...++.+.+ ..++.++.++ .|.-+|..+++..-......+. .. .......+
T Consensus 215 g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~-~~----~~~~~s~p 288 (488)
T cd00216 215 GGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD-LW----DYDGPNQP 288 (488)
T ss_pred CCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC-Cc----ccccCCCC
Confidence 0001 123444444 4666666554 6888899888754432211100 00 00000111
Q ss_pred -EEEEEEccCCC---EEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 218 -ITGLAYSNTSE---LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 218 -i~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
+..+. .-++. +++.+. +|.+..+|..++. .+-...... ..+. .+| ..++.
T Consensus 289 ~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~----------------~~W~~~~~~-----~~~~-~~~--~~vyv 343 (488)
T cd00216 289 SLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGK----------------LISARPEVE-----QPMA-YDP--GLVYL 343 (488)
T ss_pred eEEecc-ccCCCeeEEEEEECCCceEEEEECCCCc----------------EeeEeEeec-----cccc-cCC--ceEEE
Confidence 11111 11232 344444 8899999998873 221111000 0111 222 22222
Q ss_pred ------------------eCCCCeEEEEecCCCceeEeecccc--------cce--EEEeecCCCcEEEEEecCCeEEEe
Q 013644 293 ------------------GSDCGHLFIWKKKGGKLVRLMVGDR--------HVV--NQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 293 ------------------~~~dg~i~iwd~~~~~~~~~~~~h~--------~~v--~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
...+|.+.-.|+.+|+.+-...... .+. ..+. ..+.+|+.++.||.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEE
Confidence 2245788888888888776554320 111 1122 245688888999999999
Q ss_pred ccCCCCC
Q 013644 345 APMPTDF 351 (439)
Q Consensus 345 ~~~~~~~ 351 (439)
|.++++.
T Consensus 422 d~~tG~~ 428 (488)
T cd00216 422 DATTGKE 428 (488)
T ss_pred ECCCCce
Confidence 9988875
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.35 E-value=1.8e-05 Score=70.09 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=62.6
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
....|.|++++|+.+.|+.|+.||+|++||...+.... ....-..+.++|+| +|..+++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---~ka~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---AKAEFIPTLIAWHP--DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---eeecccceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence 56789999999999999999999999999987763322 23445678999999 999999999999999999853
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.34 E-value=0.00013 Score=65.06 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=99.4
Q ss_pred cCCcccEEEEEEeecCCCcEEEEec---CC-CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc--
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSS---AD-GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF-- 127 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~-- 127 (439)
..-...+..-+|+| ++..++-.. .. ..+.++++.+++......+.++ -..-+|+|||++++++...||.
T Consensus 189 ~~~~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCcc
Confidence 34445677788998 888766542 22 4689999988877655444433 3457899999999999888886
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce--EEEEeCcCCcccCCCCCCCCcccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTF 205 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~ 205 (439)
|+++|+..+...+ +... .+.-..=.|+|+|..++++.+..|. |.+++......
T Consensus 264 iy~~dl~~~~~~~-Lt~~-----------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~------------- 318 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNG-----------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV------------- 318 (425)
T ss_pred EEEEcCCCCccee-cccC-----------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-------------
Confidence 5556777666333 2211 1112255789999777777777776 44455554331
Q ss_pred cccccccCCCccEEEEEEccCCCEEEEec--CCe--EEEEEccCC
Q 013644 206 CPRHLIGKNNIHITGLAYSNTSELLISYN--DEL--VYLFEKNMG 246 (439)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~--i~i~d~~~~ 246 (439)
..+ ......-..-.|+|+|++++..+ +|. |.+.++.++
T Consensus 319 --~ri-T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 319 --TRL-TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred --eEe-eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 001 11111122667899999888775 555 555555544
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=0.00012 Score=66.64 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=93.2
Q ss_pred ECCCCCEEEEec-CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec----------------------
Q 013644 22 FNSTGDFLVSGS-DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS---------------------- 78 (439)
Q Consensus 22 ~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---------------------- 78 (439)
++|||+.+...+ ..+.+.+.|..+.+...++..+- ....+.++| ++.++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg--npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG--NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC--CcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 445665543322 34567777777665544443221 334456666 666666554
Q ss_pred ------------------CCCcEEEEEccc----CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC
Q 013644 79 ------------------ADGQVRLGQIFE----DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 79 ------------------~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
.++.|.+.|..+ +..+ ...+. -......+.++|||+++++++..+.+|.++|+.+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v-~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSAL-TRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcce-EEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 124566777655 1111 12222 33566789999999999989999999999999886
Q ss_pred Ccee--------eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 137 SATR--------LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 137 ~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
+... .+... .. -...-...+|.++| +.+.+-..|..|..|++..
T Consensus 354 k~~~~~~~~~~~~vvae-ve-------vGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAE-PE-------LGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhccCCccceEEEe-ec-------cCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 5311 00000 00 01123457788886 7888888899999999886
No 343
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.29 E-value=0.0023 Score=56.47 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=59.9
Q ss_pred EEEECCCCCEEEEecCCCeEEE---EeCCCCc-----ceeeee--cCCc--ccEEEEEEeec---------CCCcEEEEe
Q 013644 19 AVEFNSTGDFLVSGSDDKLVIF---WDWKDRR-----EKFSYL--SGHL--DNIFQTRIMPF---------TDDRKIITS 77 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~dg~i~i---w~~~~~~-----~~~~~~--~~h~--~~v~~~~~~~~---------~~~~~l~s~ 77 (439)
.++.+|++++||.|..+..+.+ |+..... ...... ..+. ..|+++.+.|. .|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999987776665 6432111 111110 1222 58999998886 356789999
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
..+|.|++|.. ++..+.. -.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~--Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLS--QLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHH--HhcCccceEEEEecc
Confidence 99999999986 4444322 233677777777643
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.0015 Score=60.32 Aligned_cols=166 Identities=11% Similarity=0.089 Sum_probs=89.3
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcc-cEEEEEEeecCCCcEEEEec---------CCCcEEEEEcccCceeee
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD-NIFQTRIMPFTDDRKIITSS---------ADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~ 96 (439)
..++.++.++.|.-+|.++++.+-+....... .-..+.-+|.-.+..++.++ .++.+..+|..+++..-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 56777888999999999999876554221110 00111111111234455543 367888889988877644
Q ss_pred EEecCCC------------------Cce-EEEEEccCCCcEEEEeCCCC------------------cEEEEEccCCCce
Q 013644 97 KRLGKHQ------------------GRV-YKLAVEPGSPYIIYSCGEDG------------------FVQHFDLRSDSAT 139 (439)
Q Consensus 97 ~~~~~~~------------------~~v-~~i~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~ 139 (439)
....... ..+ ...++.+.+. +++.++.++ .|.-+|.++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 3332110 011 1234444444 456666554 7999999999887
Q ss_pred eeEEeeccCCCCCCCCcee-eeEEEe-ecCCCCcEEEEeecCceEEEEeCcCCcccC
Q 013644 140 RLFYCSSFSENSKQPMNSI-RLNAIV-IDPRNPNYFAVGGSDEYARVYDIRKCHWYS 194 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~-~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 194 (439)
-......... ........ .+..+. ..-.....+++++.+|.+..+|.++++.+-
T Consensus 270 W~~~~~~~~~-~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 270 WFYQTTPHDL-WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred EEeeCCCCCC-cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 6654321100 00000000 111111 111111367888889999999999988544
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.27 E-value=5.5e-07 Score=79.67 Aligned_cols=207 Identities=12% Similarity=0.081 Sum_probs=130.5
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeC----CCCcEEEEEc
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG----EDGFVQHFDL 133 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~----~dg~i~iwd~ 133 (439)
..+.|+++.-..+...++.|..+|.|.+-.++...-......+++....++++|++-....||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456777776522445788899999999998876544333446778899999999997666676653 3567999999
Q ss_pred cCCCc--eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 134 RSDSA--TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 134 ~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
.++-. ..... +.. . ......+++|..+. +++++|.....+.++|++.... ...
T Consensus 137 ~s~ltvPke~~~---fs~-~----~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~----------------~~~ 191 (783)
T KOG1008|consen 137 NSLLTVPKESPL---FSS-S----TLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD----------------SVS 191 (783)
T ss_pred ccccCCCccccc---ccc-c----cccCccccccccCc-chhhcccccchhhhhhhhhhhh----------------hhh
Confidence 88622 11111 111 0 12235578888654 7889999999999999984220 000
Q ss_pred cCCCccEEEEEEcc-CCCEEEEecCCeEEEEEc-cCCCCCCCCCCCcccccccccceeEeC--CCCcceeeeEEeeCCCC
Q 013644 212 GKNNIHITGLAYSN-TSELLISYNDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPND 287 (439)
Q Consensus 212 ~~~~~~i~~~~~~~-~~~~l~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~s~~~ 287 (439)
.-....+..+.+.| .+.++++..|+.|.+||. .+-. .+++.+.. ...+..+..++ |.|..
T Consensus 192 svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnie---------------npl~~i~~~~N~~~~~l~~~a-ycPtr 255 (783)
T KOG1008|consen 192 SVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIE---------------NPLQIILRNENKKPKQLFALA-YCPTR 255 (783)
T ss_pred hhhhhhcccceecCCCCCceeccccCceeeccchhhhc---------------cHHHHHhhCCCCcccceeeEE-eccCC
Confidence 11233567788888 778999889999999994 2211 11111111 11112367777 55543
Q ss_pred -ceEEEeC-CCCeEEEEecC
Q 013644 288 -EYVMSGS-DCGHLFIWKKK 305 (439)
Q Consensus 288 -~~l~~~~-~dg~i~iwd~~ 305 (439)
..+++.+ ..++|+++++.
T Consensus 256 tglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cchhhhhccCcceEEEeccc
Confidence 3444444 45789999865
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.24 E-value=0.0014 Score=55.29 Aligned_cols=256 Identities=11% Similarity=0.075 Sum_probs=130.0
Q ss_pred EEEEECCCCCEEEEec----------CCCeEEEEeCCCCcceeeeecCCc--c----cEEEEEEeecCCCcEEEEec--C
Q 013644 18 NAVEFNSTGDFLVSGS----------DDKLVIFWDWKDRREKFSYLSGHL--D----NIFQTRIMPFTDDRKIITSS--A 79 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~h~--~----~v~~~~~~~~~~~~~l~s~~--~ 79 (439)
-.+..+|+++.+++++ ..-.|.+||..+......+..... . ....++++. ++++++..- -
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TP 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTP 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCC
Confidence 3467899999988753 234799999998765544322221 1 112245555 666665542 2
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc-CCCceeeEEeeccCCCCCCCCcee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR-SDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
..+|.|-|+...+.+...... + |...-|.++.-|.+-+.||.+.-..+. .|+...... ..+.... ..
T Consensus 117 a~SVtVVDl~~~kvv~ei~~P---G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~-----dp 184 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTP---G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDD-----DP 184 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGT---S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTT-----S-
T ss_pred CCeEEEEECCCCceeeeecCC---C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCC-----cc
Confidence 456777777665554332222 1 222234333346688889999999988 455443222 2222111 11
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc----cCCCccEEEEEEccCCCEEEEe-
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI----GKNNIHITGLAYSNTSELLISY- 233 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~- 233 (439)
.+..-++...+ ..++--+.+|.|+-.|+......- ...+....-. .-..+...-+++++....|.+.
T Consensus 185 ~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~-------~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 185 LFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF-------GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE-------EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred cccccceECCC-CeEEEEecCCEEEEEeccCCcccc-------cCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 11122233333 334445678888888877643110 0000000000 0011223346666544333332
Q ss_pred c--------CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEE-eCCCCeEEE
Q 013644 234 N--------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS-GSDCGHLFI 301 (439)
Q Consensus 234 ~--------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~-~~~dg~i~i 301 (439)
. +. .|.++|+.++ +.+..+.... .+.++. .+.+.+ +|++ ...++.+.+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~----------------krv~Ri~l~~---~~~Si~-Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTH----------------KRVARIPLEH---PIDSIA-VSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTT----------------EEEEEEEEEE---EESEEE-EESSSS-EEEEEETTTTEEEE
T ss_pred cCCCCCCccCCceEEEEEECCCC----------------eEEEEEeCCC---ccceEE-EccCCCcEEEEEcCCCCeEEE
Confidence 1 11 5777777766 4444444322 366777 676665 5544 456799999
Q ss_pred EecCCCceeEeecc
Q 013644 302 WKKKGGKLVRLMVG 315 (439)
Q Consensus 302 wd~~~~~~~~~~~~ 315 (439)
||..+|+.++.+..
T Consensus 317 ~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 317 YDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT--EEEEE--
T ss_pred EeCcCCcEEeehhc
Confidence 99999999988864
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.22 E-value=0.00037 Score=62.45 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=79.2
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
.+....-....+.++|+|++++.+ .||.-.|+.....+.. ..+.-...+|.+ .+. +|+-...++|.++.-
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k------~~G~g~~~vw~~--~n~-yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK------AFGSGLSFVWSS--RNR-YAVLESSSTIKIYKN 96 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE------EEEE-SEEEE-T--SSE-EEEE-TTS-EEEEET
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc------ccCceeEEEEec--Ccc-EEEEECCCeEEEEEc
Confidence 344445568899999999999885 4688888884333221 124455678886 454 666666888999632
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
-+........+. ..+..|-. |. +|...+ ++.|.+||+.+++.++.+.. .+|..+.|+++
T Consensus 97 ~~~~~~k~i~~~---~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v-------------~~vk~V~Ws~~ 155 (443)
T PF04053_consen 97 FKNEVVKSIKLP---FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDV-------------SAVKYVIWSDD 155 (443)
T ss_dssp TEE-TT-----S---S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS--------------E-EEEEE-TT
T ss_pred CccccceEEcCC---cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEec-------------CCCcEEEEECC
Confidence 222221111121 23444433 65 454443 44899999999998888752 23889999998
Q ss_pred CCcEEEEeecCceEEEEeCcC
Q 013644 169 NPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 169 ~~~~l~~~~~dg~i~i~d~~~ 189 (439)
+ .+++..+.+ .+.+++...
T Consensus 156 g-~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 156 G-ELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp S-SEEEEE-S--SEEEEEE-H
T ss_pred C-CEEEEEeCC-eEEEEEecc
Confidence 7 677776654 666666543
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00015 Score=64.72 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=115.4
Q ss_pred ecCCCCceEEEEEccCCCcEEEEeCCC---CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE
Q 013644 99 LGKHQGRVYKLAVEPGSPYIIYSCGED---GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV 175 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 175 (439)
+......+..-+|+|+++.+.+..-.. ..+.++++.+++....... .+.-..-.|+|++..++++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------------~g~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------------NGNNGAPAFSPDGSKLAFS 255 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc------------CCccCCccCCCCCCEEEEE
Confidence 444456677788999998655543222 4599999999887776652 2234456899999778888
Q ss_pred eecCce--EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CC--eEEEEEccCCCCC
Q 013644 176 GGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGP 249 (439)
Q Consensus 176 ~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~ 249 (439)
...||. |.++|+..++... +....+.-..-.|+|+|+.++-.+ .| .|.+++....
T Consensus 256 ~~rdg~~~iy~~dl~~~~~~~----------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--- 316 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKNLPR----------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--- 316 (425)
T ss_pred ECCCCCccEEEEcCCCCccee----------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC---
Confidence 888875 5666777654211 111122222567999999888765 34 5666666554
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCe--EEEEecCCCceeEeecccccceEEEeec
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPH 326 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s 326 (439)
....+........ .-. ++|||++|+..+. +|. |.+.++.++...+.+. +......-.|.
T Consensus 317 --------------~~~riT~~~~~~~--~p~-~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~ 378 (425)
T COG0823 317 --------------QVTRLTFSGGGNS--NPV-WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWA 378 (425)
T ss_pred --------------ceeEeeccCCCCc--Ccc-CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcC
Confidence 2223332222211 222 8999999987764 344 6667776665444443 23334456677
Q ss_pred CCCcEEEEEec
Q 013644 327 PHIPMFATCGI 337 (439)
Q Consensus 327 ~~~~~l~s~~~ 337 (439)
|+++.+...+.
T Consensus 379 ~ng~~i~~~s~ 389 (425)
T COG0823 379 PNGRMIMFSSG 389 (425)
T ss_pred CCCceEEEecc
Confidence 88876655543
No 349
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.21 E-value=0.006 Score=58.06 Aligned_cols=332 Identities=8% Similarity=-0.005 Sum_probs=160.4
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCc----EEEEecCCCcEEEEEcccC
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDR----KIITSSADGQVRLGQIFED 91 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iw~~~~~ 91 (439)
.++....+.+...++.++.++.+....+.............+..|.|+.++|..+++ +++.|..+..+.+.-.-..
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 344444444444566666656666666655442222223445789999999853333 6777777666555433222
Q ss_pred ceeeeEE-ecC--CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 92 GRMDTKR-LGK--HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 92 ~~~~~~~-~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
....... +.. -...|.-..+-.+.. +|.++..||.+..|.+........-...... ...++.--.|+..
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-------Gt~P~~Lr~f~sk 640 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTL-------GTQPISLRTFSSK 640 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEcccccccc-------CCCCcEEEEEeeC
Confidence 2221111 221 223444455555554 5668899999887766544322111100000 1222333344444
Q ss_pred CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEE-EEEccC--CCEEEEecCCeEEEEEccC
Q 013644 169 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG-LAYSNT--SELLISYNDELVYLFEKNM 245 (439)
Q Consensus 169 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--~~~l~~~~d~~i~i~d~~~ 245 (439)
+.+.+++.+ |+-..+|.-+..-....+.. ..+.. ..|+.+ ...|+.++.+.+.+.-+..
T Consensus 641 ~~t~vfa~s-drP~viY~~n~kLv~spls~-----------------kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 641 SRTAVFALS-DRPTVIYSSNGKLVYSPLSL-----------------KEVNHMCPFNSDAYPDSLASANGGALTIGTIDE 702 (1096)
T ss_pred CceEEEEeC-CCCEEEEecCCcEEEeccch-----------------HHhhhhcccccccCCceEEEecCCceEEEEecc
Confidence 444444444 34444454332211111000 00111 122222 3567777777777776653
Q ss_pred CCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-----------CC---CeEEEEecCCCceeE
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----------DC---GHLFIWKKKGGKLVR 311 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-----------~d---g~i~iwd~~~~~~~~ 311 (439)
-+. . .++++.-+.. ...++ +.+....+++.+ .. ..++++|-++.+.+.
T Consensus 703 iqk-------------l-~irtvpl~~~---prrI~-~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 703 IQK-------------L-HIRTVPLGES---PRRIC-YQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred hhh-------------c-ceeeecCCCC---hhheE-ecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 211 1 1112222221 34444 333222222221 11 257777777766554
Q ss_pred eecccc----cceEEEeecCC-CcEEEEEec----------CCeEEEeccCC-CCCCCCCCc--hhhhhhhhccccCcce
Q 013644 312 LMVGDR----HVVNQLEPHPH-IPMFATCGI----------EKTVKLWAPMP-TDFPPLPDN--AEKIMKANKQGREDHS 373 (439)
Q Consensus 312 ~~~~h~----~~v~~~~~s~~-~~~l~s~~~----------dg~i~iw~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 373 (439)
..+-.. ..|.++.|..| +.+++.|.. .|.|.++.+.. +++.....+ .+.++... ..++++
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~--~fngkl 842 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV--EFNGKL 842 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh--hhCCeE
Confidence 332111 24566668877 667777753 58899998877 333332222 22333332 334566
Q ss_pred EEEeCCCcEEEEEEecccceee
Q 013644 374 RITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 374 ~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+++.++ .++++++.+++.++
T Consensus 843 lA~In~--~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 843 LAGINQ--SVRLYEWTTERELR 862 (1096)
T ss_pred EEecCc--EEEEEEccccceeh
Confidence 666665 78999888885554
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.21 E-value=0.0032 Score=54.88 Aligned_cols=136 Identities=11% Similarity=0.127 Sum_probs=82.3
Q ss_pred CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCC-----CcEEEEecC---------C-CcEEEEEcccC----ceeee
Q 013644 36 KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD-----DRKIITSSA---------D-GQVRLGQIFED----GRMDT 96 (439)
Q Consensus 36 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~~~l~s~~~---------d-g~i~iw~~~~~----~~~~~ 96 (439)
+.|++.|..+.+.+..+.-.....+.+++.....+ ..+|+.|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46889998887766555444556677776655433 467777653 2 88999999874 22222
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV 175 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 175 (439)
..-....++|++++-. .+ +++++. .+.|.+|++...+ ....-... ....+.++.... +++++
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~~~~~----------~~~~i~sl~~~~---~~I~v 144 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKKAFYD----------SPFYITSLSVFK---NYILV 144 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEEEEE-----------BSSSEEEEEEET---TEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhhheec----------ceEEEEEEeccc---cEEEE
Confidence 2223456889998876 33 355444 4789999999888 33222211 122355555543 57888
Q ss_pred eecCceEEEEeCc
Q 013644 176 GGSDEYARVYDIR 188 (439)
Q Consensus 176 ~~~dg~i~i~d~~ 188 (439)
|.....+.++..+
T Consensus 145 gD~~~sv~~~~~~ 157 (321)
T PF03178_consen 145 GDAMKSVSLLRYD 157 (321)
T ss_dssp EESSSSEEEEEEE
T ss_pred EEcccCEEEEEEE
Confidence 8777777766443
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.15 E-value=0.0017 Score=58.36 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=111.0
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
.......+.++| +++.++. +.+|.-.|+.....+.. ..+.-...+|.+.++ +|+-...+.|.++.--.
T Consensus 31 ~~~~p~~ls~np--ngr~v~V-~g~geY~iyt~~~~r~k-------~~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNP--NGRFVLV-CGDGEYEIYTALAWRNK-------AFGSGLSFVWSSRNR--YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-T--TSSEEEE-EETTEEEEEETTTTEEE-------EEEE-SEEEE-TSSE--EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECC--CCCEEEE-EcCCEEEEEEccCCccc-------ccCceeEEEEecCcc--EEEEECCCeEEEEEcCc
Confidence 344578899999 9998888 55677777773222221 124456788998664 55666688899963222
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
.+....+.. ...+..+-. | .+|+..+.+ .|.+||..+++.+..+ .-
T Consensus 99 ~~~~k~i~~------------~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i-----------------~v 144 (443)
T PF04053_consen 99 NEVVKSIKL------------PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRI-----------------DV 144 (443)
T ss_dssp E-TT-----------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEE-----------------SS
T ss_pred cccceEEcC------------CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEE-----------------ec
Confidence 222222221 111233322 4 566666544 8999999987743221 12
Q ss_pred ccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC
Q 013644 216 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 295 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~ 295 (439)
.+|..+.|+++|.+++..++..+.+++........ ....... .....+.. ....|.+.+| ..+ .++..+.
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~---~~~~g~e--~~f~~~~E--~~~~IkSg~W-~~d--~fiYtT~ 214 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA---IPEEGVE--DAFELIHE--ISERIKSGCW-VED--CFIYTTS 214 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH---BTTTB-G--GGEEEEEE--E-S--SEEEE-ETT--EEEEE-T
T ss_pred CCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc---ccccCch--hceEEEEE--ecceeEEEEE-EcC--EEEEEcC
Confidence 24889999999999999998888888754310000 0000000 01122211 1224777774 323 4444444
Q ss_pred CCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 296 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
. +|+. +-.|+. ..+..-..++.=+...|..+.+.....|+.|..+.+.
T Consensus 215 ~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 215 N-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp T-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred C-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3 6665 333332 1222123466667777877788888899999888765
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.15 E-value=7.4e-06 Score=45.49 Aligned_cols=39 Identities=41% Similarity=0.731 Sum_probs=35.5
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEe
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWD 42 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~ 42 (439)
.++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.10 E-value=0.0047 Score=52.58 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=122.7
Q ss_pred EEEEeCCCCcEEEEEccC-CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCC
Q 013644 118 IIYSCGEDGFVQHFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI 196 (439)
Q Consensus 118 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 196 (439)
.|+.|+.+| +.++++.. ....... +...|..+...|+- +.+++- .|+.+.++++.........
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~-------------~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL-------------KLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe-------------ecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccc
Confidence 466888888 99999832 2222222 23348888888865 344333 3599999999876543311
Q ss_pred CCCCCcccccccccccCCCccEEEEE---EccCCCEEEEecCCeEEEEEccCCCCCCCCCCCccccccc-ccceeEeCCC
Q 013644 197 SSDTPVDTFCPRHLIGKNNIHITGLA---YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHR 272 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 272 (439)
.. ..................+...+ -......|+++....|.+|....... .. ...+.+.-.
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~------------~f~~~~ke~~lp- 138 (275)
T PF00780_consen 73 AP-LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN------------SFSKLLKEISLP- 138 (275)
T ss_pred cc-ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc------------cccceeEEEEcC-
Confidence 10 00000000000011122344444 22334677777788999998865311 01 122222222
Q ss_pred CcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc------------ccceEEEeecCCCcEEEEEecCCe
Q 013644 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------------RHVVNQLEPHPHIPMFATCGIEKT 340 (439)
Q Consensus 273 ~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~~~~s~~~~~l~s~~~dg~ 340 (439)
..+..+.|+ ++.++.|.. ....+.|+.++.....+... ..++..+.. +++.+|++. |..
T Consensus 139 --~~~~~i~~~---~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~ 209 (275)
T PF00780_consen 139 --DPPSSIAFL---GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNI 209 (275)
T ss_pred --CCcEEEEEe---CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cce
Confidence 347888853 677777765 45778898877654443211 123444444 345666653 333
Q ss_pred EEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 341 VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 341 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
-.+-+..+.... .....+............+++++.+++ +.+|++.+++...
T Consensus 210 g~fv~~~G~~~r--~~~i~W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 210 GVFVNKNGEPSR--KSTIQWSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQ 261 (275)
T ss_pred EEEEcCCCCcCc--ccEEEcCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEE
Confidence 344455433222 111111111111112344788888865 9999999997765
No 354
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.09 E-value=0.011 Score=56.47 Aligned_cols=153 Identities=8% Similarity=0.055 Sum_probs=96.8
Q ss_pred cEEEEEEccC-CCEEEEec-----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC
Q 013644 217 HITGLAYSNT-SELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 284 (439)
Q Consensus 217 ~i~~~~~~~~-~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 284 (439)
.+.+..|..+ +.++++|. .|+|.+|.+... ..++....+...+.+.++.-
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------------~~L~~v~e~~v~Gav~aL~~-- 837 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------------NSLELVAETVVKGAVYALVE-- 837 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------------Cceeeeeeeeeccceeehhh--
Confidence 4556667766 56666552 357778777653 33444444444445666653
Q ss_pred CCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC--CCCCCCchhhhh
Q 013644 285 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIM 362 (439)
Q Consensus 285 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~ 362 (439)
-+|+++|.-+ ..|++|+..+.+.++.-..|..++..+...-.|..++.|..-+++.+-.....+ .........+-+
T Consensus 838 fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W 915 (1096)
T KOG1897|consen 838 FNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW 915 (1096)
T ss_pred hCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence 3788887654 589999999888887777788899999999999999999988887776554433 433322222222
Q ss_pred hhhccccCcceEEEeCCCcEEEEEEec
Q 013644 363 KANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
.......+....+..-.+|.+.+....
T Consensus 916 mtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeEEEecCceEEeecccccEEEEEec
Confidence 222122344445555566777776554
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.011 Score=53.25 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=111.4
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.|++|+.. ++.+....+.. +.+.++.|+.+.. |+....||.+++||+.... .+...... .........+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~---~fsl~~~i--~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF---QFSLGEEI--EEEKVLECRIF 131 (410)
T ss_pred EEEEECCC-CCEeEEEEECC--CCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce---eechhhhc--cccCccccccc
Confidence 47888763 45554444443 8999999998764 4467799999999987433 11111100 00011122233
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCccc-CCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-cCCeEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY-SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 239 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~ 239 (439)
...+...| -.++ ..++.+.+..-...... .... ..+... ..............++.+....+.. .++.+.
T Consensus 132 ~~~~~~~G-ivvL--t~~~~~~~v~n~~~~~~~~~~~-~~p~~~----~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~ 203 (410)
T PF04841_consen 132 AIWFYKNG-IVVL--TGNNRFYVVNNIDEPVKLRRLP-EIPGLW----TKFHWWPSWTVIPLLSSDRVVEILLANGETIY 203 (410)
T ss_pred ccccCCCC-EEEE--CCCCeEEEEeCccccchhhccc-cCCCcc----cccccccccccceEeecCcceEEEEecCCEEE
Confidence 33333333 2233 33444444432221100 0000 000000 0000001100012344444433333 355666
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-cc
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RH 318 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~ 318 (439)
+.+-... ..+.. ...+..++ .||+|+++|.-..+|.+.+....-.+.+..+... ..
T Consensus 204 ~i~~~~~-------------------~~i~~---~~~i~~ia-vSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 204 IIDENSF-------------------KQIDS---DGPIIKIA-VSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred EEEcccc-------------------ccccC---CCCeEEEE-ECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 4443211 11111 12488898 8999999999999999999886655666655543 34
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
....|.|.-+...++.- ...+.+....+
T Consensus 261 ~p~~~~WCG~dav~l~~--~~~l~lvg~~~ 288 (410)
T PF04841_consen 261 PPKQMAWCGNDAVVLSW--EDELLLVGPDG 288 (410)
T ss_pred CCcEEEEECCCcEEEEe--CCEEEEECCCC
Confidence 66778886654433333 34566666443
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.0082 Score=51.15 Aligned_cols=228 Identities=13% Similarity=0.084 Sum_probs=121.5
Q ss_pred EEeecCCCc-EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeE
Q 013644 64 RIMPFTDDR-KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLF 142 (439)
Q Consensus 64 ~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 142 (439)
.|.+ +.. ++.+--..+.|.-|+..+++... +. +.+.+.++..-..+. .|+++. .-+.+++.+++.....+
T Consensus 31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g~~~~---~~-~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDP--DRGALLWVDILGGRIHRLDPETGKKRV---FP-SPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcC--CCCEEEEEeCCCCeEEEecCCcCceEE---EE-CCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEe
Confidence 4555 555 44444557788888886554321 22 223334444433333 344443 33667777655553222
Q ss_pred EeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-----------CceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 143 YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-----------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
.... ... .....+.+...|+| .+.++... -|.|+.+|. .+. .....
T Consensus 102 ~~~~--~~~----~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~---------------~~~l~ 158 (307)
T COG3386 102 AEPE--DGL----PLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG---------------VVRLL 158 (307)
T ss_pred cccc--CCC----CcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCC---------------EEEee
Confidence 2111 000 12346778888887 33333222 123333332 111 11122
Q ss_pred cCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 212 GKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
..+-..-+.|+|+|+++.|..+. .+.|.-|++....... .. +........ .....-.++ ...+|.+
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---------~~-~~~~~~~~~-~~G~PDG~~-vDadG~l 226 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---------GG-RRGFVDFDE-EPGLPDGMA-VDADGNL 226 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---------CC-cceEEEccC-CCCCCCceE-EeCCCCE
Confidence 33344567899999998888775 5788888876310000 00 111111111 122244555 6778887
Q ss_pred EEEeCCCC-eEEEEecCCCceeEeecccccceEEEeec-CCCcEEEEEe
Q 013644 290 VMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMFATCG 336 (439)
Q Consensus 290 l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 336 (439)
-+++-.+| .|.+|+.. |+++..+.-+...+++++|- |+.+.|...+
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 76555554 99999988 99998888776778888884 4555444333
No 357
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=0.006 Score=49.89 Aligned_cols=177 Identities=11% Similarity=0.104 Sum_probs=112.7
Q ss_pred eeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
+.|-...|.++.|+|+.+.|.+....+.-.||=...++.+.++--.--...-.+.|.. ++.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence 4454556999999999988888777777777766667665554222223445678886 77777777778888888876
Q ss_pred cCceeee-----EEe---cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 90 EDGRMDT-----KRL---GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 90 ~~~~~~~-----~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.+..... ..+ .........++|.|.+.. |+.+-+..-+.||.+............ ..+.......-..+.
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~-~~~~~~~~~f~~DvS 236 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHAS-LDPTADRDLFVLDVS 236 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccc-cCcccccceEeeccc
Confidence 5532211 111 122567889999999875 446666667777776643311111110 001111111234578
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCC
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKC 190 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 190 (439)
++.|++..+++++.+.+++.+.-.|....
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 88999887789999999998888887643
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.016 Score=54.02 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=66.8
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEE----------EEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIF----------QTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~----------~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
+..|..++.++.|.-.|..+++.+-++-..-...+. .+++ .+..++.++.++.+.-.|..+++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 446666777888999999998876654221111111 1222 24567778889999999999888765
Q ss_pred eEEecCCCC--ceEEEEEccCCCcEEEEeC------CCCcEEEEEccCCCceeeEEe
Q 013644 96 TKRLGKHQG--RVYKLAVEPGSPYIIYSCG------EDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 96 ~~~~~~~~~--~v~~i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 144 (439)
......+.. .+.+--.--++. ++ .+. .+|.|..+|.++++.+-.+..
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~-Vi-vg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGK-VI-TGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEECCE-EE-EeecccccCCCcEEEEEECCCCceeEeccC
Confidence 433322211 111111111332 33 432 368999999999987766543
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.96 E-value=3e-05 Score=42.87 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=34.3
Q ss_pred CceeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 307 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 307 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0017 Score=57.50 Aligned_cols=218 Identities=11% Similarity=0.163 Sum_probs=114.2
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee-ec------CCcccEEEEEEeecC---CC-
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY-LS------GHLDNIFQTRIMPFT---DD- 71 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~------~h~~~v~~~~~~~~~---~~- 71 (439)
.|.+..-++...++|++++.|.-| ++|.|..+|.+.|.|++....+... +. .....++++.|.... |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 355666777789999999998555 8999999999999999776544431 11 234568888887431 22
Q ss_pred --cEEEEecCCCcEEEEEccc--Ccee--e-eEEecCCCCceEEEE-EccC-C-------------------CcEEEEeC
Q 013644 72 --RKIITSSADGQVRLGQIFE--DGRM--D-TKRLGKHQGRVYKLA-VEPG-S-------------------PYIIYSCG 123 (439)
Q Consensus 72 --~~l~s~~~dg~i~iw~~~~--~~~~--~-~~~~~~~~~~v~~i~-~~~~-~-------------------~~~l~s~~ 123 (439)
-.|++|...|.+.+|.+.- +... . ......+.++|..|. ++.+ + +.+++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv- 232 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV- 232 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-
Confidence 4688899999999998752 1111 1 111224556666665 3222 1 1133333
Q ss_pred CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec----CCCCcEEEEeecCceEEEEeCcCCcccCCCCCC
Q 013644 124 EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID----PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 199 (439)
Q Consensus 124 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 199 (439)
.+..++++...+.+....... .......+.+- ..++..|++-..+|.+++|.+...+.+......
T Consensus 233 Se~~irv~~~~~~k~~~K~~~-----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFD-----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-S-----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred cccceEEEeCCCCcccceeec-----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 356789998887765444331 11223333332 113367888889999999999986644322111
Q ss_pred CCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEcc
Q 013644 200 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN 244 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~ 244 (439)
. ......+....++++|.+++-.+...+.++.+-
T Consensus 302 ~-----------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 302 P-----------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp S--------------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred C-----------ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 0 111223345667888888877776666655543
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.91 E-value=0.0012 Score=45.50 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=66.5
Q ss_pred eEEEEECC---CC-CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 17 VNAVEFNS---TG-DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 17 I~~~~~s~---~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
|++|++.. || +.|++|+.|..||+|+-.. .+..+ .-.+.|++++-.. +..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei--~e~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEI--TETDKVTSLCSLG---GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEE--ecccceEEEEEcC---CCEEEEEecCCEEEEEeCcc--
Confidence 67777765 33 5799999999999998543 33333 3456788888875 57899999999999997522
Q ss_pred eeeeEEecCCCCceEEEEEc---cCCCcEEEEeCCCCcEE
Q 013644 93 RMDTKRLGKHQGRVYKLAVE---PGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~---~~~~~~l~s~~~dg~i~ 129 (439)
.+ ...+. +..+.++++. .+|..-|++|-.+|.|-
T Consensus 73 Rl--WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RL--WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee--eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 22332 2335555543 34444577888888764
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00048 Score=63.92 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
+++++|+|..-.|+.|-.-|.+.+|...+.+ ..+....|..+|..+.|+| +|..|+++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 5679999998889999889999999977654 3455578999999999999 99999999999999999876
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.017 Score=51.59 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=159.0
Q ss_pred ceEEEEECCCCCEEEEec-CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcE-EEEecCCCcEEEEEcccCce
Q 013644 16 CVNAVEFNSTGDFLVSGS-DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRK-IITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iw~~~~~~~ 93 (439)
....+.+.|++..+.... ....+..-+.. ..........-...-..++.++ .+.. .+....++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~--~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNP--AGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCC--CCCeEEEecCCCCeEEEEcCcccce
Confidence 455677888885444332 22245554444 2111111111112334567777 6664 44555568999999766655
Q ss_pred eeeEEecCCCCceEEEEEccCCCcEEEEeC--CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 94 MDTKRLGKHQGRVYKLAVEPGSPYIIYSCG--EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
....... .....++++|+++++.++-. .++++.+.|..+++........ ..+ ..+++.|++..
T Consensus 109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-----------~~P-~~~a~~p~g~~ 173 (381)
T COG3391 109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-----------NTP-TGVAVDPDGNK 173 (381)
T ss_pred eeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-----------CCc-ceEEECCCCCe
Confidence 4332222 25678999999987776666 4789999999988877774432 122 78999999855
Q ss_pred EEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C--CeEEEEEccCCC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D--ELVYLFEKNMGL 247 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~ 247 (439)
.+++-..++.|.+.|........ ...... .........+.++|+|..+.... + +.+...|..++.
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~----------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVR-GSVGSL----------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceec-cccccc----------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 66666688999999977654321 000000 11123345688999998766653 2 578888877651
Q ss_pred CCCCCCCCccccccccccee-EeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEEecCCCceeEeecccc---cceEE
Q 013644 248 GPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDR---HVVNQ 322 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~---~~v~~ 322 (439)
.... +..... ....+. .+|+|+++..... .+.+.+.|..+......+.... ..+..
T Consensus 243 ----------------v~~~~~~~~~~--~~~~v~-~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~ 303 (381)
T COG3391 243 ----------------VTATDLPVGSG--APRGVA-VDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVS 303 (381)
T ss_pred ----------------EEEeccccccC--CCCcee-ECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccccccccee
Confidence 1111 111111 133445 7899999888744 4899999988887776655433 24556
Q ss_pred EeecCC
Q 013644 323 LEPHPH 328 (439)
Q Consensus 323 ~~~s~~ 328 (439)
+++.+.
T Consensus 304 ~~~~~~ 309 (381)
T COG3391 304 IAISPL 309 (381)
T ss_pred ccceee
Confidence 666554
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.87 E-value=0.0099 Score=51.85 Aligned_cols=185 Identities=10% Similarity=0.069 Sum_probs=106.8
Q ss_pred cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC---CCcEEEEeec---------C-ceEEEEeCcCCccc
Q 013644 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGS---------D-EYARVYDIRKCHWY 193 (439)
Q Consensus 127 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~---------d-g~i~i~d~~~~~~~ 193 (439)
.|++.|..+.+.+..+...... +...+..+.+..+ ...++++|+. . |.|.+|++....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E-------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~-- 73 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNE-------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP-- 73 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTE-------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred EEEEEeCCCCeEEEEEECCCCc-------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc--
Confidence 5777777777666555443211 2222333444432 1367777754 2 899999998740
Q ss_pred CCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC
Q 013644 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 273 (439)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (439)
.....+..... ....++|++++-- ++ .|+++.++.|.+|++... +.......+..
T Consensus 74 ------~~~~~l~~i~~-~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~----------------~~l~~~~~~~~ 128 (321)
T PF03178_consen 74 ------ENNFKLKLIHS-TEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNS----------------KTLLKKAFYDS 128 (321)
T ss_dssp ----------EEEEEEE-EEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETT----------------SSEEEEEEE-B
T ss_pred ------ccceEEEEEEE-EeecCcceEhhhh-CC-EEEEeecCEEEEEEccCc----------------ccchhhheecc
Confidence 00001111111 2336778888766 34 477777899999999875 11222222222
Q ss_pred cceeeeEEeeCCCCceEEEeCCCCeEEEEecCC-CceeEeec--ccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 274 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 274 ~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
...+.++.. .+++++.|..-..+.++..+. ...+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 129 ~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 129 PFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred eEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 224666653 467999998888888775443 22222222 1235688888886667999999999999998864
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.87 E-value=0.015 Score=52.84 Aligned_cols=250 Identities=12% Similarity=0.140 Sum_probs=125.3
Q ss_pred ceEEEEEccCCCcEEEEeCCCC----cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDG----FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD- 179 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 179 (439)
.+....++|++++++++.+..| .++++|+++++.+..... ......+.|.+++..++.+...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~------------~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE------------NPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE------------EEESEEEEECTTSSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc------------ccccceEEEeCCCCEEEEEEeCcc
Confidence 3446789999998777655444 499999999966543211 12233499999875555554332
Q ss_pred ---------ceEEEEeCcCCcccCCCCCCCCcccccccccccCCC-c-cEEEEEEccCCCEEEEec----C-CeEEEEEc
Q 013644 180 ---------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-I-HITGLAYSNTSELLISYN----D-ELVYLFEK 243 (439)
Q Consensus 180 ---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~----d-~~i~i~d~ 243 (439)
..|+.|.+.+... ....++.... . ....+..++++++++... + ..+++.++
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~-------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQS-------------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GG-------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred cccccCCCCcEEEEEECCCChH-------------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 2467777765431 0011112222 2 266788999999877542 3 46778887
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC---CCCeEEEEecCCCce---eEeecccc
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKL---VRLMVGDR 317 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~h~ 317 (439)
..+..+ ......+...... ....+. +..+.+++... .++.|...++.+... ...+..|.
T Consensus 260 ~~~~~~------------~~~~~~l~~~~~~-~~~~v~--~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 260 DDGGSP------------DAKPKLLSPREDG-VEYYVD--HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp CCTTTS------------S-SEEEEEESSSS--EEEEE--EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred cccCCC------------cCCcEEEeCCCCc-eEEEEE--ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 653100 0122333322222 122222 22444444332 246777778776652 22444555
Q ss_pred c--ceEEEeecCCCcEEEEEecCC--eEEEeccC-CCCCC--CCCCchhhhhhhhccccCcceEEEeCC---CcEEEEEE
Q 013644 318 H--VVNQLEPHPHIPMFATCGIEK--TVKLWAPM-PTDFP--PLPDNAEKIMKANKQGREDHSRITLTP---DVIMHVLR 387 (439)
Q Consensus 318 ~--~v~~~~~s~~~~~l~s~~~dg--~i~iw~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~v~~w~ 387 (439)
. .+..+.... +.+++..-.++ .|+++++. +.... .++. ...+.........+...++.+. -+++..+|
T Consensus 325 ~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 325 EDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp SSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred CceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 4 455555432 23445555554 67888888 43321 1221 1112222211222333333332 25677777
Q ss_pred ecccceeee
Q 013644 388 LQRRQTLAY 396 (439)
Q Consensus 388 ~~~~~~~~~ 396 (439)
+.+++...+
T Consensus 403 ~~t~~~~~~ 411 (414)
T PF02897_consen 403 LATGELTLL 411 (414)
T ss_dssp TTTTCEEEE
T ss_pred CCCCCEEEE
Confidence 777766544
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.82 E-value=0.001 Score=63.24 Aligned_cols=148 Identities=13% Similarity=0.154 Sum_probs=97.9
Q ss_pred CCcEEEEe-cCCCcEEEEEcccCceeeeEEecCCCCc-eEEEEEcc-----CCCcEEEEeCCCCcEEEEEccCCCceee-
Q 013644 70 DDRKIITS-SADGQVRLGQIFEDGRMDTKRLGKHQGR-VYKLAVEP-----GSPYIIYSCGEDGFVQHFDLRSDSATRL- 141 (439)
Q Consensus 70 ~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~- 141 (439)
+.++|+.. .....|+-.|++.++.+.. +..+... |..++-.. .....+ .|-.+..+..||.+-......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~e--W~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEE--WKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEE--eecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceee
Confidence 34444443 3457788889988887754 4444432 55543221 112233 677788999999996541111
Q ss_pred EEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEE
Q 013644 142 FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
-....+. ......|++-..+| +||+|+.+|.||+||-- +. .....+++-..+|..|
T Consensus 569 ~~~k~Y~-------~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 569 SQSKQYS-------SKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGI 624 (794)
T ss_pred ccccccc-------cCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEE
Confidence 1111111 34457888888765 89999999999999932 22 2233445668899999
Q ss_pred EEccCCCEEEEecCCeEEEEEcc
Q 013644 222 AYSNTSELLISYNDELVYLFEKN 244 (439)
Q Consensus 222 ~~~~~~~~l~~~~d~~i~i~d~~ 244 (439)
..+.||+++++..+..+.+++..
T Consensus 625 Dvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 625 DVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred EecCCCcEEEEeecceEEEEEEe
Confidence 99999999999999999999974
No 367
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.80 E-value=0.022 Score=50.59 Aligned_cols=292 Identities=14% Similarity=0.141 Sum_probs=145.2
Q ss_pred CCEEEEecCCCeEEEEeCCCCcce---eeeecCCcccEEEEEEeecC--CCcEEEEecCCCcEEEEEcccCc-------e
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREK---FSYLSGHLDNIFQTRIMPFT--DDRKIITSSADGQVRLGQIFEDG-------R 93 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iw~~~~~~-------~ 93 (439)
...|++||..|.++||+....... ......-..+|..+..-.+. .....++.-.-..+.+|.+.... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 468999999999999998554311 11112445688887765431 22233333556788888873221 1
Q ss_pred eeeEEecCCC--CceEEEEEcc----CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 94 MDTKRLGKHQ--GRVYKLAVEP----GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 94 ~~~~~~~~~~--~~v~~i~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
.....+..|. .....++.-| .+..++.+-+-||.+.+|+-+.-.....+...- . ...++|.+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l---------l---PgPl~Y~~ 184 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL---------L---PGPLCYCP 184 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC---------C---CcCeEEee
Confidence 1112222232 2223333333 224577788999999999876654333333211 1 23467777
Q ss_pred CCCcEEEEeecCceEEEEeCcCCcccCCCCC--C------CCccccccccc--ccCCCccEEEEEEccCCCEEEEecCCe
Q 013644 168 RNPNYFAVGGSDEYARVYDIRKCHWYSPISS--D------TPVDTFCPRHL--IGKNNIHITGLAYSNTSELLISYNDEL 237 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~------~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~d~~ 237 (439)
.. ..|++++.+..+..|............. . .......+... +...--.|..+.++.....+++-+...
T Consensus 185 ~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~ 263 (418)
T PF14727_consen 185 RT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERS 263 (418)
T ss_pred cC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecce
Confidence 54 7888988888999888643221111000 0 00000011000 111122233333433334444445556
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe-eCCC-CceEEEeCCCCeEEEEecCCCceeEeecc
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
+...+.... .+..+.+......-....+.+ ..++ ...++.++.++.+.||.-. +++...+.
T Consensus 264 Lf~l~~~G~---------------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l 326 (418)
T PF14727_consen 264 LFCLKDNGS---------------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQL 326 (418)
T ss_pred EEEEcCCCe---------------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCC
Confidence 666654321 111222222211100111100 1122 1257888899999999733 34433333
Q ss_pred cccceEEEe---ecCCCcEEEEEecCCeEEEeccCC
Q 013644 316 DRHVVNQLE---PHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 316 h~~~v~~~~---~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
...+| ++. |..-..+|++-+.+|.+.+-=+-+
T Consensus 327 ~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 PHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 22333 333 333345888889999998865533
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0025 Score=56.14 Aligned_cols=148 Identities=11% Similarity=0.161 Sum_probs=100.3
Q ss_pred CCcEEE-EecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCc-------EEEEeCCCCcEEEEEccCCCc--e
Q 013644 70 DDRKII-TSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY-------IIYSCGEDGFVQHFDLRSDSA--T 139 (439)
Q Consensus 70 ~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~--~ 139 (439)
+.++|+ ++.....++-.|++.++.+.. +.-+.. |+-+.+.|+.+. .| .|-.|..|.-||.+-... +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeE--Wk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEE--WKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeE--eeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCccee
Confidence 344444 455566777788888887754 443444 777777776542 23 566788899999885433 1
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEE
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (439)
......++. ......|.+-..+| ++++|+.+|.|++||- .+. .....+++-..+|.
T Consensus 420 ~~~q~kqy~-------~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 420 AVVQSKQYS-------TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIK 475 (644)
T ss_pred eeeeccccc-------cccccceeeecCCc--eEEEeecCCcEEeehh-hhh--------------hhhhcccccCCcee
Confidence 122222222 23346666666654 8999999999999996 333 22334466788999
Q ss_pred EEEEccCCCEEEEecCCeEEEEEccC
Q 013644 220 GLAYSNTSELLISYNDELVYLFEKNM 245 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~d~~i~i~d~~~ 245 (439)
.+..+.+|+++++..+..+.+.++.-
T Consensus 476 hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 476 HVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred eEEeeccCcEEEEecccEEEEEEEec
Confidence 99999999999999999999888753
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.79 E-value=0.027 Score=51.24 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=72.6
Q ss_pred ceEEEEECCCCCEEEEe-----cCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC----------
Q 013644 16 CVNAVEFNSTGDFLVSG-----SDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---------- 80 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------- 80 (439)
.+....++|+|+++|.+ +....++++|+.+++.+...+... ....+.|.+ +++.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD--DGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT--TSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC--CCCEEEEEEeCcccccccCCC
Confidence 44467899999998864 222469999999986654433221 122389998 87777655433
Q ss_pred -CcEEEEEcccCceeeeEEecCCCCc--eEEEEEccCCCcEEEEeCCC---CcEEEEEccCC
Q 013644 81 -GQVRLGQIFEDGRMDTKRLGKHQGR--VYKLAVEPGSPYIIYSCGED---GFVQHFDLRSD 136 (439)
Q Consensus 81 -g~i~iw~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 136 (439)
..|..|.+.+........+...... ...+..+++++++++..... ..+.+.++..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 2377888866544322233333333 56888999999877655443 34777787764
No 370
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.77 E-value=0.035 Score=51.78 Aligned_cols=161 Identities=13% Similarity=0.076 Sum_probs=87.3
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecC-Cc--ccEEEEEEeecCCCcEEEEec------CCCcEEEEEcccCceeeeE
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSG-HL--DNIFQTRIMPFTDDRKIITSS------ADGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-h~--~~v~~~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~~~~~~ 97 (439)
..++.++.|+.+.-.|..+++.+-..... +. ..+.+--..- ++ .++.+. .+|.|..+|.++++.+-..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 45667778899999999999876553211 11 1121111111 34 444443 2688999999888765332
Q ss_pred EecCC-----------------------------CCceE-EEEEccCCCcEEEEeCC-----CC-----------cEEEE
Q 013644 98 RLGKH-----------------------------QGRVY-KLAVEPGSPYIIYSCGE-----DG-----------FVQHF 131 (439)
Q Consensus 98 ~~~~~-----------------------------~~~v~-~i~~~~~~~~~l~s~~~-----dg-----------~i~iw 131 (439)
..... ...++ .+++.|... +++.+.. ++ .|.-.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 21110 01121 345666555 4444432 12 57778
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC--cEEEEeecCceEEEEeCcCCccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWY 193 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 193 (439)
|+++++..-.++......- ..... ....-+.+..++. ..++.+..+|.+.+.|-++++.+
T Consensus 277 d~~TG~~~W~~Q~~~~D~w-D~d~~-~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEW-DYDGV-NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccccCCEEEeeeCCCCCCc-cccCC-CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 8888887766544221100 00000 0111122223342 47889999999999999999875
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.027 Score=50.27 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=156.6
Q ss_pred EEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec-CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCC
Q 013644 38 VIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS-ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSP 116 (439)
Q Consensus 38 i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 116 (439)
+.+++..+......+ ..+. ....+.+.| ++..+.... ....+...+.. ..... .....-...-..+++++.++
T Consensus 13 ~~v~~~~~~~~~~~~-~~~~-~~~~v~~~~--~g~~~~v~~~~~~~~~~~~~~-~n~~~-~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAI-SLGR-GPGGVAVNP--DGTQVYVANSGSNDVSVIDAT-SNTVT-QSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEe-ecCC-CCceeEEcC--ccCEEEEEeecCceeeecccc-cceee-eeccCCCccccceeeCCCCC
Confidence 555555444332222 1111 445566777 664444332 22244444443 11111 11111113446788899998
Q ss_pred cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee--cCceEEEEeCcCCcccC
Q 013644 117 YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYS 194 (439)
Q Consensus 117 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~ 194 (439)
..++....+..|.+.|..+........... ....++++|++....++-. .++.+.+.|..+.+...
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 777777778999999987777666655432 3567899998855555555 36888888888766322
Q ss_pred CCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC
Q 013644 195 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272 (439)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
. . .....+ ..++++|+|..+.... ++.+.+.|........ ...........
T Consensus 155 ~--------------~-~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-----------~~~~~~~~~~~ 207 (381)
T COG3391 155 T--------------I-PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-----------GSVGSLVGVGT 207 (381)
T ss_pred E--------------E-ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-----------cccccccccCC
Confidence 1 1 111123 7899999999776664 8999999976541000 00000111111
Q ss_pred CcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCceeEeeccccc-ceEEEeecCCCcEEEEEec-CCeEEEeccC
Q 013644 273 NSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFATCGI-EKTVKLWAPM 347 (439)
Q Consensus 273 ~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 347 (439)
. ...+. ++|+|+++...... +.+...|..++.....-..-.. ....+..+|+|..+..... .+.+.+-|..
T Consensus 208 ~---P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 208 G---PAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred C---CceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 1 23444 78999976655443 5899999988877665211111 4567889999998877744 4788888877
Q ss_pred CCCC
Q 013644 348 PTDF 351 (439)
Q Consensus 348 ~~~~ 351 (439)
+..+
T Consensus 284 ~~~v 287 (381)
T COG3391 284 TDRV 287 (381)
T ss_pred CCce
Confidence 6554
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.029 Score=50.45 Aligned_cols=191 Identities=11% Similarity=0.092 Sum_probs=96.3
Q ss_pred EEECCCCCEEEEecCC----------C-eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 20 VEFNSTGDFLVSGSDD----------K-LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~d----------g-~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
++.+|.|-.+|....+ . .|+||+.... .+..+.-.+ +.+.++.|.. ...|+....||.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i~w~~-~~iv~~~wt~---~e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSIPWDS-GRIVGMGWTD---DEELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEEEECC-CCEEEEEECC---CCeEEEEEcCCEEEEEeC
Confidence 4556666556655333 1 5889986544 444432233 7999999984 567777789999999998
Q ss_pred ccCceeeeEEecC-------CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCce-ee
Q 013644 89 FEDGRMDTKRLGK-------HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNS-IR 159 (439)
Q Consensus 89 ~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 159 (439)
.. +. ...+.. ....+....+..+| +++ -..++.+.+.+-.... ..+.+. ..+... ...+. ..
T Consensus 109 ~G-~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivv-Lt~~~~~~~v~n~~~~~~~~~~~--~~p~~~-~~~~~~~~ 179 (410)
T PF04841_consen 109 FG-EF--QFSLGEEIEEEKVLECRIFAIWFYKNG--IVV-LTGNNRFYVVNNIDEPVKLRRLP--EIPGLW-TKFHWWPS 179 (410)
T ss_pred CC-ce--eechhhhccccCcccccccccccCCCC--EEE-ECCCCeEEEEeCccccchhhccc--cCCCcc-cccccccc
Confidence 53 22 111110 11122222333344 332 2344444443222211 111111 111000 00000 00
Q ss_pred eEE-EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 160 LNA-IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 160 v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
... ..++.+. ...+....++.+.+.+-...+. -...+++..+++||+++++|... +|.
T Consensus 180 ~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~-------------------i~~~~~i~~iavSpng~~iAl~t~~g~ 239 (410)
T PF04841_consen 180 WTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ-------------------IDSDGPIIKIAVSPNGKFIALFTDSGN 239 (410)
T ss_pred cccceEeecCc-ceEEEEecCCEEEEEEcccccc-------------------ccCCCCeEEEEECCCCCEEEEEECCCC
Confidence 111 2233333 3444444555666444332110 11245799999999999999886 788
Q ss_pred EEEEEcc
Q 013644 238 VYLFEKN 244 (439)
Q Consensus 238 i~i~d~~ 244 (439)
+.+....
T Consensus 240 l~v~ssD 246 (410)
T PF04841_consen 240 LWVVSSD 246 (410)
T ss_pred EEEEECc
Confidence 8887654
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.01 Score=56.81 Aligned_cols=197 Identities=9% Similarity=0.050 Sum_probs=111.8
Q ss_pred cCCCeEEEEeCCCCcceeeeecCCc-ccEEEEEEeec---CCCcEEEEecCCCcEEEEEcccCceeeeE-E--ecCCCCc
Q 013644 33 SDDKLVIFWDWKDRREKFSYLSGHL-DNIFQTRIMPF---TDDRKIITSSADGQVRLGQIFEDGRMDTK-R--LGKHQGR 105 (439)
Q Consensus 33 ~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~--~~~~~~~ 105 (439)
.....|.-.|+..++.+... ..|. .+|..++-... -.....+.|-.+..+..||.+-....... . .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW-~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEW-KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEe-ecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34567888888888776665 3443 33544432110 01344566777889999999865421111 1 1124456
Q ss_pred eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEE
Q 013644 106 VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 185 (439)
..|++-+.+| .||+|+.+|.||+||- .++..++. .+.-..+|..|..+.+|. ++++. .+..|.++
T Consensus 580 Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~----------lp~lG~pI~~iDvt~DGk-wilaT-c~tyLlLi 644 (794)
T PF08553_consen 580 FSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTA----------LPGLGDPIIGIDVTADGK-WILAT-CKTYLLLI 644 (794)
T ss_pred ceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhc----------CCCCCCCeeEEEecCCCc-EEEEe-ecceEEEE
Confidence 8899888888 4789999999999994 33221111 112356799999999984 44433 34578888
Q ss_pred eCc--CCcccCC------CCC-CCCc---ccccccccc-----cCCCccEEEEEEcc----CCCEEEEecCCeEEEEEcc
Q 013644 186 DIR--KCHWYSP------ISS-DTPV---DTFCPRHLI-----GKNNIHITGLAYSN----TSELLISYNDELVYLFEKN 244 (439)
Q Consensus 186 d~~--~~~~~~~------~~~-~~~~---~~~~~~~~~-----~~~~~~i~~~~~~~----~~~~l~~~~d~~i~i~d~~ 244 (439)
+.. .++.... +.. ..|. ..+.|.+.. .+.....+...|+- ..+.++++....+.+|+++
T Consensus 645 ~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~ 724 (794)
T PF08553_consen 645 DTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFK 724 (794)
T ss_pred EEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHH
Confidence 864 2211111 110 0110 111111110 12223344556652 3467888889999999986
Q ss_pred C
Q 013644 245 M 245 (439)
Q Consensus 245 ~ 245 (439)
.
T Consensus 725 k 725 (794)
T PF08553_consen 725 K 725 (794)
T ss_pred H
Confidence 4
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.73 E-value=0.0033 Score=43.47 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=66.9
Q ss_pred EEEEEEeecCCC--cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC
Q 013644 60 IFQTRIMPFTDD--RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS 137 (439)
Q Consensus 60 v~~~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 137 (439)
|++|++..+... +.|++|+.|..|++|+-. ..+ ..+. ..+.|.+++-...+ .|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~--~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIV--AEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEE--EEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc--
Confidence 678888775332 689999999999999743 222 2232 45778888877775 477888999999987532
Q ss_pred ceeeEEeeccCCCCCCCCceeeeEEEee---cCCCCcEEEEeecCceEE
Q 013644 138 ATRLFYCSSFSENSKQPMNSIRLNAIVI---DPRNPNYFAVGGSDEYAR 183 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~ 183 (439)
+.+... .+..+.++++ ..+|..-|++|-.+|.|-
T Consensus 73 --RlWRiK----------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --RLWRIK----------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeec----------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222211 1222444443 444556788988888774
No 375
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.62 E-value=0.048 Score=49.34 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=78.4
Q ss_pred ccceEEEEECCCC-----CEEEEecCCCeEEEEeCCCC-----cceee----eecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 14 KGCVNAVEFNSTG-----DFLVSGSDDKLVIFWDWKDR-----REKFS----YLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 14 ~~~I~~~~~s~~~-----~~l~t~~~dg~i~iw~~~~~-----~~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
-.-|..+.|.|-+ .+||. .....|.||.+... +.+.. +-....---..+.|+| ....|+.-..
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~ 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence 3568999999942 35555 45578999997521 11111 1001111124578999 7888877666
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
...-.+.++..........+ ...+-|.|.+|.+||++++++.+..=.-++||-.....
T Consensus 133 ~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred CceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhh
Confidence 55555667665444333344 35688999999999999888888877788998665543
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.0037 Score=50.71 Aligned_cols=166 Identities=12% Similarity=0.153 Sum_probs=95.5
Q ss_pred EECCCCCEEEEecC-----CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC----------------
Q 013644 21 EFNSTGDFLVSGSD-----DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---------------- 79 (439)
Q Consensus 21 ~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---------------- 79 (439)
.|||||.+|...-. -|.|-|||...+-...-.+..|.-.-..+.+.+ ||..++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~--DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA--DGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec--CCcEEEEeCCceecccccCccccchh
Confidence 58999999886533 378999999866554444567777778899999 9999987643
Q ss_pred --CCcEEEEEcccCceeeeEEec--CCCCceEEEEEccCCCcEEEEeCCCCc-----EEEEEccCCCceeeEEeeccCCC
Q 013644 80 --DGQVRLGQIFEDGRMDTKRLG--KHQGRVYKLAVEPGSPYIIYSCGEDGF-----VQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 80 --dg~i~iw~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
.-++.+.|..+++.+....+. -+.-.|..++..++|. +++.+-..|. -.+=-...++....+...+.
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee--- 273 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE--- 273 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH---
Confidence 113334444455544444444 3456678888888876 4433322211 11111112222222111100
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCccc
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 193 (439)
........|-+++.+.+.+...+++-..+...+||..++..+
T Consensus 274 -~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 274 -QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred -HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 000012236678887666455555556667889999998754
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00041 Score=62.10 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=75.2
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEE-EEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIF-QTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+..+ .-|...++ +++|.| ||+.||.|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecC--CCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999999999999887 4455554 44666666 999999 999999999999999999998876
Q ss_pred eeeEEecCCCCceEEEEEcc
Q 013644 94 MDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~ 113 (439)
+... ...-...|.++.|.+
T Consensus 97 l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred eecc-ccccccchheeeccc
Confidence 6432 223456788888874
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0004 Score=62.20 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=65.4
Q ss_pred eeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceE-EEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 277 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+..+. |+|.-.++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||++||.|-.||+|++-|+..+..
T Consensus 23 i~~~e-wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 23 IKRIE-WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred eEEEE-EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 66777 89999999999999999999988 888888887777777 999999999999999999999999977654
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.55 E-value=0.033 Score=52.38 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=63.2
Q ss_pred CCCCEEEEecCC------CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC------CcEEEEEcccC
Q 013644 24 STGDFLVSGSDD------KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD------GQVRLGQIFED 91 (439)
Q Consensus 24 ~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~~ 91 (439)
..+.+++.||.+ ..+..+|..++.-....-..+...-.+++.. ++...++|+.| .++..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE---CCEEEEEccccCCCcccceEEEecCCCC
Confidence 346677788776 3677888877642221111233334555665 67888899888 35667888777
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc-----EEEEEccCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF-----VQHFDLRSDSA 138 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~ 138 (439)
+......+...... .....-+..+.++||.||. +..||..+.+-
T Consensus 360 ~W~~~a~M~~~R~~---~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSD---FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred ceeccCCccCcccc---ceeEEECCEEEEEeccccccccccEEEecCCCCcc
Confidence 65433222222222 2222222347888998864 66677776543
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.55 E-value=0.033 Score=45.59 Aligned_cols=214 Identities=12% Similarity=0.007 Sum_probs=117.6
Q ss_pred ccceeeeeecc-ccceEEEEECCCCCEEEEecCCC--eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 3 RINLCGKLHGH-KGCVNAVEFNSTGDFLVSGSDDK--LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 3 ~~~~~~~l~~h-~~~I~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
++++++++... ..-...+.|..+|.++-+.+.-| .|+.+|+.+++......-...----.++.. ++....-.=.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEESS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEec
Confidence 34566666532 23455688877888888887666 899999999876544322322223344444 4455555556
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
++...+||..+-+.+....+. +.=+.++ .+++.+++| .....|+++|..+.+....+....... .-..
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~------pv~~ 176 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGR------PVSN 176 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTE------E---
T ss_pred CCeEEEEccccceEEEEEecC---CcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEEEECCE------ECCC
Confidence 889999999887766554444 3456666 456656644 446689999998888777665542111 1224
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEe
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 233 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 233 (439)
++.+.+-. | .+.|=.=....|...|..+++....+....-...............-.+.|++.|... ++++|
T Consensus 177 LNELE~i~-G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYIN-G-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEET-T-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cEeEEEEc-C-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66677763 3 5555555566777788888775543322111000000000011245578999988764 55555
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0034 Score=55.39 Aligned_cols=143 Identities=12% Similarity=0.151 Sum_probs=89.8
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--------CEEEEecCCeEEEEE
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------ELLISYNDELVYLFE 242 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~d~~i~i~d 242 (439)
-+|..+.....++-.|+..++.+...... ..|+-+.+.|+. ..|+.-++..|.-||
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~----------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFE----------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeecc----------------CCcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 34555666677888899888865433221 125555666654 345666799999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCc--ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccce
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 320 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 320 (439)
++-... ..+....+|... ....|.+ .....+|++|+.+|.|++||.-..+....+.+-..+|
T Consensus 411 pRv~~~--------------~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 411 PRVQGK--------------NKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred ccccCc--------------ceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence 874311 111122222211 1133433 2455699999999999999974334445667778899
Q ss_pred EEEeecCCCcEEEEEecCCeEEEecc
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
..|..+.+|++|+..+ +..+.+-++
T Consensus 475 ~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEec-ccEEEEEEE
Confidence 9999999999876655 445555543
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.051 Score=46.46 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=124.1
Q ss_pred EECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-eeeEE
Q 013644 21 EFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-MDTKR 98 (439)
Q Consensus 21 ~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~ 98 (439)
.|.++.. ++.+--..+.|.-|+..+++.... .+...+.++.... .+..|+++.. .+.+++.+++.. .....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---~~p~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF---PSPGGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---ECCCCcccceeec--CCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 4566655 455555677888888876643222 2233445555443 5556665543 355666654444 21111
Q ss_pred ec-C-CCCceEEEEEccCCCcEEEEeCC------C---CcEEEEEcc-CCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 99 LG-K-HQGRVYKLAVEPGSPYIIYSCGE------D---GFVQHFDLR-SDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 99 ~~-~-~~~~v~~i~~~~~~~~~l~s~~~------d---g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
.. + .....+.+...|+|...+ +... . ..-.+|-+. .+..++.+.. +-..-+.++|+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-----------~~~~~NGla~S 171 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-----------DLTIPNGLAFS 171 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecC-----------cEEecCceEEC
Confidence 11 1 224567888899997433 3222 0 111344444 3444443332 12345889999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC-eEEEEEcc
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-LVYLFEKN 244 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~-~i~i~d~~ 244 (439)
|++..++++=+..+.|.-|++..... ...............+..-.++...+|.+.+++. ++ .|..|+..
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g--------~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATG--------PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccC--------ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 99855555555568888888763110 0000011111223445566778888888886554 43 99999987
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 295 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~ 295 (439)
+ +....+.-... .+++++|-.++.+.|+..+.
T Consensus 244 -G----------------~l~~~i~lP~~--~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 -G----------------KLLGEIKLPVK--RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -C----------------cEEEEEECCCC--CCccceEeCCCcCEEEEEec
Confidence 4 35555555433 37778866676665554443
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.046 Score=44.68 Aligned_cols=248 Identities=10% Similarity=0.054 Sum_probs=127.5
Q ss_pred eEEEEEccCCCcEEEEeCCCCc-EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-----C
Q 013644 106 VYKLAVEPGSPYIIYSCGEDGF-VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-----D 179 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d 179 (439)
-..|+|+|..+.-++.+-.-|+ ..++|....+....+..... ..-.-.-.|+|+| .+|...-. -
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~---------RHfyGHGvfs~dG-~~LYATEndfd~~r 139 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG---------RHFYGHGVFSPDG-RLLYATENDFDPNR 139 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC---------ceeecccccCCCC-cEEEeecCCCCCCC
Confidence 3457888887766666666665 56789888877766643321 1123345789988 55555432 3
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE-E-------ccCCCCCCC
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF-E-------KNMGLGPSP 251 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~-d-------~~~~~~~~~ 251 (439)
|.|-+||.+.+- .....+..|.-....+.+.+||+.++..+.| |..- | +.+.++.
T Consensus 140 GViGvYd~r~~f--------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGG-IethpdfgR~~lNldsMePS-- 202 (366)
T COG3490 140 GVIGVYDAREGF--------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGG-IETHPDFGRTELNLDSMEPS-- 202 (366)
T ss_pred ceEEEEeccccc--------------ceecccccCCcCcceeEEecCCcEEEEeCCc-eecccccCccccchhhcCcc--
Confidence 689999998532 2223336677778889999999999887543 2221 1 1110000
Q ss_pred CCCCccccc--ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCe-----EEEEecCCCceeEeecc-------cc
Q 013644 252 LSLSPEDLQ--KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKLVRLMVG-------DR 317 (439)
Q Consensus 252 ~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------h~ 317 (439)
+..-+.. ..-...++......-++..+. ..+||...+.+-..|. -.+=-...++.+..+.. ..
T Consensus 203 --lvlld~atG~liekh~Lp~~l~~lSiRHld-~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 203 --LVLLDAATGNLIEKHTLPASLRQLSIRHLD-IGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred --EEEEeccccchhhhccCchhhhhcceeeee-eCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 0000000 000111111111112255555 5566655544322111 11111122333333321 22
Q ss_pred cceEEEeecCCCcEEEEEec-CCeEEEeccCCCCCCCCCC--chhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 318 HVVNQLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 318 ~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
..|-+++.+.+..+++..+- .+...+||..++.+..... ....+ .....-.+..|.+|.++++.-.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGv------a~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGV------AAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccc------eeccCceEEecCCceEEecccc
Confidence 45777888766666555544 4567899999988633221 11111 1112234555667888877433
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.024 Score=53.25 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=83.6
Q ss_pred cceEEEEECCCCCEEEEec------CCC--eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC------
Q 013644 15 GCVNAVEFNSTGDFLVSGS------DDK--LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD------ 80 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~------~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------ 80 (439)
..+.+.+++|+|+.+|..- .|. .|.+++. +.....+..+. ..+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCC--CCCCceECC--CCCceEEEecCcceEEE
Confidence 4678899999999877654 243 4555554 22223333333 378889999 88877776532
Q ss_pred ------CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE---EEccCCCceeeEEeeccCCCC
Q 013644 81 ------GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH---FDLRSDSATRLFYCSSFSENS 151 (439)
Q Consensus 81 ------g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~ 151 (439)
+.+.+.++..+.... .....|..+.|+|||.++++.. ++.|++ -....+. ...-........
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~- 494 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPG- 494 (591)
T ss_pred eccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecc-
Confidence 222222332222110 2346799999999999876655 467776 3333333 111110001000
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeC
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 187 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 187 (439)
-...+..+.|.+++ . |+++..++.-.+|.+
T Consensus 495 ----l~~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 495 ----LGDTAVSLDWRTGD-S-LVVGRSDPEHPVWYV 524 (591)
T ss_pred ----cCCccccceEecCC-E-EEEEecCCCCceEEE
Confidence 12225778999876 4 445555554444543
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.40 E-value=0.051 Score=51.22 Aligned_cols=67 Identities=6% Similarity=0.079 Sum_probs=42.2
Q ss_pred CCceEEEeCCC------CeEEEEecCC-C--ceeEeecccccceEEEeecCCCcEEEEEecCC--eEEEeccCCCCCCCC
Q 013644 286 NDEYVMSGSDC------GHLFIWKKKG-G--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TVKLWAPMPTDFPPL 354 (439)
Q Consensus 286 ~~~~l~~~~~d------g~i~iwd~~~-~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~i~iw~~~~~~~~~~ 354 (439)
+++..+.|+.+ ..+..||..+ . +.+..+.........+.+ ++++.++||.|| .+-.||+.+.+...+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 56777777654 2467899776 3 344444433333333333 678889999888 777888887776433
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.35 E-value=0.089 Score=45.97 Aligned_cols=66 Identities=9% Similarity=0.160 Sum_probs=44.1
Q ss_pred eeeEEeeCC------CCceEEEeCCCCeEEEEecCCCcee---Ee-ecccccceEEEeecCCCcEEEEEecCCeEE
Q 013644 277 VKGVNFFGP------NDEYVMSGSDCGHLFIWKKKGGKLV---RL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVK 342 (439)
Q Consensus 277 v~~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~~~~---~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 342 (439)
+..+.|+.. .|.++++.-..+.|....+..+..+ .. +......+..+++.|||.+.++.+.+|.|.
T Consensus 255 p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 255 PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 666664422 5667777777788888888754322 12 233445899999999999988888888763
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.00095 Score=52.17 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=46.8
Q ss_pred CCCceEEEeCCCCeEEEEecCCCceeEeecccc-cceEEEeecCCCcEEEEE--ecCCeEEEeccCC
Q 013644 285 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPMP 348 (439)
Q Consensus 285 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~ 348 (439)
.++.+..+++.||.|+.|+++..+.+.....|. .++.....+..+++++.+ |.|..++.|++..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 455688999999999999999888887777776 455555555556666666 6666777777653
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.18 E-value=0.14 Score=45.01 Aligned_cols=211 Identities=13% Similarity=0.070 Sum_probs=89.4
Q ss_pred CCCEEEEec-CCCeEEEEeCCCCc---ceeeeecC---Cc----ccEEEEEEeecCCCcEEEEecC------CCcEEEEE
Q 013644 25 TGDFLVSGS-DDKLVIFWDWKDRR---EKFSYLSG---HL----DNIFQTRIMPFTDDRKIITSSA------DGQVRLGQ 87 (439)
Q Consensus 25 ~~~~l~t~~-~dg~i~iw~~~~~~---~~~~~~~~---h~----~~v~~~~~~~~~~~~~l~s~~~------dg~i~iw~ 87 (439)
+.++|+..+ ..+.|.|.|+.+.- .+.+++.. +. ..-..+.-.| +|+.++++-. -|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp--~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP--DGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S--S--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC--CccEEEEeccCCCCCCCCcEEEEc
Confidence 456777766 67899999997432 12222221 11 1222333345 7888887522 24566766
Q ss_pred cccCceeeeEEecC-CCCceEEEEEccCCCcEEEEeC--------------------CCCcEEEEEccCCCceeeEEeec
Q 013644 88 IFEDGRMDTKRLGK-HQGRVYKLAVEPGSPYIIYSCG--------------------EDGFVQHFDLRSDSATRLFYCSS 146 (439)
Q Consensus 88 ~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~--------------------~dg~i~iwd~~~~~~~~~~~~~~ 146 (439)
-++-+..-...... ...--..+-+.|..+ +++|.. .-.++.+||+.+.+.++.+....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 65443332211111 122335667778766 455543 23579999999999988887542
Q ss_pred cCCCCCCCCceeeeEEEee--cCCCCcEEEEeecCceEEEEeC-cCCcccCCCCCC---CCcccccccc---cccCCCcc
Q 013644 147 FSENSKQPMNSIRLNAIVI--DPRNPNYFAVGGSDEYARVYDI-RKCHWYSPISSD---TPVDTFCPRH---LIGKNNIH 217 (439)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~ 217 (439)
.......+.| .|+...-|+.+....+|..|-- ..++........ .++....... -+..-..-
T Consensus 243 ---------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 243 ---------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp ---------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred ---------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 1222344444 4544333444444445544433 333321110000 0000000000 01112455
Q ss_pred EEEEEEccCCCEEEEec--CCeEEEEEccCCC
Q 013644 218 ITGLAYSNTSELLISYN--DELVYLFEKNMGL 247 (439)
Q Consensus 218 i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~ 247 (439)
|+.|.+|.|.++|..+. .|.++.||+....
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 89999999999999886 9999999998764
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0018 Score=37.16 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=30.1
Q ss_pred ccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 317 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 317 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
...|..++|+|...+||.+..+|.|.++++...+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3579999999999999999999999999995544
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.16 E-value=0.084 Score=41.87 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=113.7
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc-CCCcE-EEEeCCCCcEEEEEccCCCceeeEEeecc
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP-GSPYI-IYSCGEDGFVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 147 (439)
.+.++.+--..+.|.-||+.+.+... ..+.+. ++.++.+-- +++.. .+.++..-.|--||.........-.+...
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~r-a~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev 102 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYR-AKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEV 102 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEE-EEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeecccc
Confidence 34455555556777779987754432 233322 133333322 22222 33344433455577443222222222222
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeec----------CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 217 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (439)
.+.. ...+.+.-..+|+| ++ ..|.. .|.++.|-....- ......-.-
T Consensus 103 ~~d~----kknR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~h~v-----------------~~i~~~v~I 159 (310)
T KOG4499|consen 103 QPDR----KKNRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAGHQV-----------------ELIWNCVGI 159 (310)
T ss_pred CchH----HhcccccCccCCCC-ce-eeeeeccccccccccccEEEEeccCCCc-----------------eeeehhccC
Confidence 2111 24456667778887 45 33322 1334444332110 001111223
Q ss_pred EEEEEEccCCCEEEEe-c-CCeEEEEE--ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 218 ITGLAYSNTSELLISY-N-DELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 218 i~~~~~~~~~~~l~~~-~-d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
-+.++|+.+.+.+..- + +-.|.-|| ..++.-... ..+...+..+.+. +. ..-.++ +..+|++.++.
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-----~~i~dlrk~~~~e-~~---~PDGm~-ID~eG~L~Va~ 229 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-----KVIFDLRKSQPFE-SL---EPDGMT-IDTEGNLYVAT 229 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCc-----ceeEEeccCCCcC-CC---CCCcce-EccCCcEEEEE
Confidence 3568888887766655 3 66787777 444421111 1111111111111 11 123344 56688888888
Q ss_pred CCCCeEEEEecCCCceeEeecccccceEEEeec
Q 013644 294 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 326 (439)
Q Consensus 294 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 326 (439)
-..++|...|..+|+.+.++.-....|++++|-
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 888999999999999999999888999999995
No 391
>PHA02713 hypothetical protein; Provisional
Probab=97.13 E-value=0.075 Score=50.12 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=36.1
Q ss_pred CCcEEEEecCC------CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC-----cEEEEEccCCC
Q 013644 70 DDRKIITSSAD------GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG-----FVQHFDLRSDS 137 (439)
Q Consensus 70 ~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 137 (439)
++...+.||.+ ..+..||..++.......+....... +++. -++ .+.+.||.++ .+..||..+++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDD-TIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECC-EEEEECCcCCCCCCceEEEEECCCCe
Confidence 67777887753 34677888766543222222111111 2222 234 3777888764 47788888764
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.11 E-value=0.0022 Score=36.85 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=29.3
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR 47 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~ 47 (439)
...|.+++|+|..++||.|..+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 357999999999999999999999999998 443
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.033 Score=53.91 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
-+..++.|+..|.+...|+...=. +...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++..+.+.....+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap- 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAP- 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCc-
Confidence 456788899999999888754311 1112223457999999999998 6779999999999999999988888764433
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 188 (439)
+.+ +..+.+..++ ..++++...|. +|.+.
T Consensus 175 ------~t~-vi~v~~t~~n-S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 ------VTG-VIFVGRTSQN-SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ------cce-EEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence 233 3334444444 57888887776 55543
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.02 E-value=0.12 Score=48.78 Aligned_cols=190 Identities=13% Similarity=0.176 Sum_probs=100.1
Q ss_pred cEEEEeCCCC------cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC------ceEEE
Q 013644 117 YIIYSCGEDG------FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYARV 184 (439)
Q Consensus 117 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i 184 (439)
.+++.||.++ .+..||..++.....-. .. ....-.++++.. +.++++|+.+ ..+..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~---m~-------~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~ 353 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP---MP-------SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVER 353 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCC---CC-------cccccccEEEEC--CEEEEEccccCCCcccceEEE
Confidence 4677787773 57788888774322221 11 122234444444 3789999988 35788
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC-----eEEEEEccCCCCCCCCCCCccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-----LVYLFEKNMGLGPSPLSLSPED 258 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~~~~~~ 258 (439)
||.+..++....+... ......+. .-+|.+.++|+ || .+-.||..+..
T Consensus 354 YD~~~~~W~~~a~M~~-----------~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~----------- 407 (571)
T KOG4441|consen 354 YDPRTNQWTPVAPMNT-----------KRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNK----------- 407 (571)
T ss_pred ecCCCCceeccCCccC-----------ccccceeE----EECCEEEEEeccccccccccEEEecCCCCc-----------
Confidence 9988877543211111 11111111 12466666664 54 46777766541
Q ss_pred ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC------eEEEEecCCCc--eeEeecccccceEEEeecCCCc
Q 013644 259 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG------HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIP 330 (439)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg------~i~iwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~ 330 (439)
+.....+...... ...+ .-+|+..++|+.++ ++..||..+.+ .+..+........ ++. -++.
T Consensus 408 ---W~~va~m~~~r~~--~gv~---~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~ 477 (571)
T KOG4441|consen 408 ---WTPVAPMLTRRSG--HGVA---VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGK 477 (571)
T ss_pred ---ccccCCCCcceee--eEEE---EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCE
Confidence 1111111111111 1111 23788888888654 57788876654 3333332222222 222 3567
Q ss_pred EEEEEecCC-----eEEEeccCCCCCCCC
Q 013644 331 MFATCGIEK-----TVKLWAPMPTDFPPL 354 (439)
Q Consensus 331 ~l~s~~~dg-----~i~iw~~~~~~~~~~ 354 (439)
+.+.||.|+ +|..||+.+.+...+
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEc
Confidence 888888776 377788887765443
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.96 E-value=0.33 Score=45.94 Aligned_cols=167 Identities=10% Similarity=0.018 Sum_probs=82.5
Q ss_pred ccEEEEEEeecCCCcEEEEec------CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 58 DNIFQTRIMPFTDDRKIITSS------ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
..+...+.+| +++.++... .|..-.||-...+.... ....+ .....-.|+|+|..+.+....+..+++.
T Consensus 350 ~~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~-~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV-QVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCCCcce-eeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 4678899999 999887665 24444455433222221 11222 2378889999987544332221223333
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE---EeCcCCcccCCCCCCCCccccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV---YDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
+-.....+..+.... . .........|..+.|+|+|.++.++. ++.|.+ -....+. . ....++
T Consensus 425 ~~~~~gql~~~~vd~-g--e~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~---------~l~~~~ 489 (591)
T PRK13616 425 RDPATGQLARTPVDA-S--AVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-Y---------ALTNPR 489 (591)
T ss_pred ccCCCceEEEEeccC-c--hhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-e---------eecccE
Confidence 221111111111100 0 00001244699999999985444443 467776 3333332 0 000111
Q ss_pred ccccCCCccEEEEEEccCCCEEEEecCC--eEEEEEcc
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYNDE--LVYLFEKN 244 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~d~--~i~i~d~~ 244 (439)
.+...-...+..+.|.+++.+++...++ .+...++.
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 2222223345789999999977655433 44444444
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.0045 Score=48.52 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=60.2
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCC-C
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ-G 104 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~ 104 (439)
+.-++.|+.+|.|.+|+.............-...|.++--.- .++.+..+++.+|.|+.|++.-.+.+.. ...|. .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~-~~~~~~c~~~~dg~ir~~n~~p~k~~g~--~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG-RDSSLGCVGAQDGRIRACNIKPNKVLGY--VGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccc-cccceeEEeccCCceeeeccccCceeee--eccccCC
Confidence 355788899999999998643332222222223333322221 1556888999999999999976665532 44455 3
Q ss_pred ceEEEEEccCCCcEEEEe--CCCCcEEEEEccC
Q 013644 105 RVYKLAVEPGSPYIIYSC--GEDGFVQHFDLRS 135 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~--~~dg~i~iwd~~~ 135 (439)
++........+. +++.+ +.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 444444333333 33344 4555555555543
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.83 E-value=0.22 Score=45.39 Aligned_cols=187 Identities=12% Similarity=0.110 Sum_probs=101.5
Q ss_pred cceEEEEECCCCCE-EEEec--CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecC--CCcEEEEecCCCcEEEEEcc
Q 013644 15 GCVNAVEFNSTGDF-LVSGS--DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT--DDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 15 ~~I~~~~~s~~~~~-l~t~~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iw~~~ 89 (439)
.+|..++|. ||+. ++|.- ..|.+++=|. . ..+.-..|..+.|.|.. +...|++......|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~-----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---K-----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---c-----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 578889997 5544 44431 2233332221 1 12444679999999841 23356666777899999885
Q ss_pred cC-----ceeeeEEec-CCCCc--eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 90 ED-----GRMDTKRLG-KHQGR--VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 90 ~~-----~~~~~~~~~-~~~~~--v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.. +....+.-. +..-+ -..+.|+|... +|+.-.....-.+++++.....-..... ..+.|.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~----------~~G~Ih 159 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK----------TSGLIH 159 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc----------CCceEE
Confidence 22 111111100 01111 23567999887 5544444444345566554432222211 366799
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
|.+|.+||.+++++.+..=.-++||-....+ ....+|+.. .-.+.|.++.-.-+.+..++
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd~~qKtL--------~~CsfcPVF---dv~~~Icsi~AT~dsqVAva 219 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWDSAQKTL--------HRCSFCPVF---DVGGYICSIEATVDSQVAVA 219 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEecCchhhh--------hhCCcceee---cCCCceEEEEEeccceEEEE
Confidence 9999999977666666666788998654321 111233322 22445666665555554443
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.78 E-value=0.25 Score=41.24 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=87.1
Q ss_pred ceEEEEECCCCCEEEEec---CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE-cccC
Q 013644 16 CVNAVEFNSTGDFLVSGS---DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ-IFED 91 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~-~~~~ 91 (439)
.+.+.+++++|+.+|... ....+.++... ......+.+ ..+....|.+ ++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccC--CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999998776654 33455555543 333333323 3788889998 877766666666667664 2233
Q ss_pred ceeeeE-EecCCCCceEEEEEccCCCcEEEEe--CCCCcEEEEEccCCCce--eeEE-eeccCCCCCCCCceeeeEEEee
Q 013644 92 GRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSC--GEDGFVQHFDLRSDSAT--RLFY-CSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 92 ~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
...... ....-...|..+.++|||.++.+.. ..++.|.+--+.....- ..+. ..... ......+..+.|
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~-----~~~~~~v~~v~W 173 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA-----PPLLSDVTDVAW 173 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec-----ccccCcceeeee
Confidence 222111 1111122899999999999866555 33567777655432221 1111 00000 012346889999
Q ss_pred cCCCCcEEEEeecC
Q 013644 166 DPRNPNYFAVGGSD 179 (439)
Q Consensus 166 ~~~~~~~l~~~~~d 179 (439)
.+++ .+++.+...
T Consensus 174 ~~~~-~L~V~~~~~ 186 (253)
T PF10647_consen 174 SDDS-TLVVLGRSA 186 (253)
T ss_pred cCCC-EEEEEeCCC
Confidence 9987 555554433
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.74 E-value=0.07 Score=49.89 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=76.0
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc-----c
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF-----E 90 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~-----~ 90 (439)
..+-+.-+.-++.-++-+....+.|||...+...........+.|.++.|...++++.+++.+..+.|.++.-. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555555554444455689999998876433322245789999999887799999999999999998531 1
Q ss_pred --C--ceeeeEEecCCC-CceEEEEEccCCCcEEEEeCCCCcEEEEEc
Q 013644 91 --D--GRMDTKRLGKHQ-GRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 91 --~--~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 133 (439)
. ..+....+..++ .+|.+..|.++|. ++ +|+ ...+.++|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECC
Confidence 1 112222344455 6899999999995 33 332 356777764
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.009 Score=57.50 Aligned_cols=101 Identities=15% Similarity=0.268 Sum_probs=72.4
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 226 TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 226 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
.+.+++.++ .|.+...|..... .....+.....+|++++ |+.+|+.++.|-.+|.|.+||+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL-----------------~~~~~ne~v~~~Vtsva-fn~dg~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL-----------------GPLHQNERVQGPVTSVA-FNQDGSLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc-----------------chhhcCCccCCcceeeE-ecCCCceeccccCCCcEEEEEc
Confidence 445566665 7788888876531 11223333344699999 8999999999999999999999
Q ss_pred CCCceeEeecccccceEE---EeecCCCcEEEEEecCCeEEEecc
Q 013644 305 KGGKLVRLMVGDRHVVNQ---LEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~---~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
..++.++.+..|..+.+. +.+..++..+.++...|. +|.+
T Consensus 160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 999999888776655444 445556667888877775 6654
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.68 E-value=0.34 Score=41.31 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=81.8
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
...-.+.+..+..++ ++.+++++..-....-|+--.....+. -..-...|..|.|.|++. +.+ ....|.|+.=+
T Consensus 140 ~~~~~gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~~w~~~--~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~ 213 (302)
T PF14870_consen 140 VSETSGSINDITRSS--DGRYVAVSSRGNFYSSWDPGQTTWQPH--NRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSD 213 (302)
T ss_dssp E-S----EEEEEE-T--TS-EEEEETTSSEEEEE-TT-SS-EEE--E--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE
T ss_pred ccCCcceeEeEEECC--CCcEEEEECcccEEEEecCCCccceEE--ccCccceehhceecCCCC-EEE-EeCCcEEEEcc
Confidence 345567788888888 999888887766667787543323322 223468899999999986 443 34778888766
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
... ....+...... .......+..++|.+++ ...++|+ .|.+. .....++. ........
T Consensus 214 ~~~--~~~~w~~~~~~----~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l~-~S~DgGkt------------W~~~~~~~ 272 (302)
T PF14870_consen 214 DPD--DGETWSEPIIP----IKTNGYGILDLAYRPPN-EIWAVGG-SGTLL-VSTDGGKT------------WQKDRVGE 272 (302)
T ss_dssp -TT--EEEEE---B-T----TSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-------------EE-GGGT
T ss_pred CCC--CccccccccCC----cccCceeeEEEEecCCC-CEEEEeC-CccEE-EeCCCCcc------------ceECcccc
Confidence 111 11111111111 01123448899999875 5555555 45443 34444431 11111112
Q ss_pred CCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 213 KNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
.-....+.+.|.+..+-++.+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 33556889999988899999999988766
No 402
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.58 E-value=0.86 Score=45.08 Aligned_cols=129 Identities=11% Similarity=0.108 Sum_probs=76.4
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc--ccCCCccEEEEEEccCCCEEEEec
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL--IGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
..+...++|+|.....||+....|...||++............. ..... ..+ -.........+.|.++...|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~-~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL-SRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceee-ccCCC-ccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 44578899999888899999999999999993222111100000 00000 001 011224566889999999999999
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC--CceEEEeCCCCeEEEEecCC
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~ 306 (439)
...+.++|+.+.... ..+........|..+. -++. +..++..+ ..|...++..
T Consensus 223 r~~l~~~d~~~~~~~----------------~~l~~~~~~~~IlDv~-~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 223 RSKLMLIDFESNWQT----------------EYLVTAKTWSWILDVK-RSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CCceEEEECCCCCcc----------------chhccCCChhheeeEE-ecCCccceEEEEec--CeEEEEEccC
Confidence 999999999876211 1122222333477776 4554 23333322 4676777665
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.37 Score=39.91 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=103.9
Q ss_pred ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec
Q 013644 99 LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS 178 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 178 (439)
+.+-...+.++.|+|+.+.++ +......-.++=...|+.++.+....+.. .-.+.+...| .+.++--.
T Consensus 81 i~g~~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~D----------pE~Ieyig~n-~fvi~dER 148 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSD----------PETIEYIGGN-QFVIVDER 148 (316)
T ss_pred cccccccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCC----------hhHeEEecCC-EEEEEehh
Confidence 445566699999999998655 66666666666667788888776544331 3345555543 55555556
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcc
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
++.+.++.+........... ..+..... ...+.....++|.|..+.|..+. .+-+.||........ ......
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~----~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~ 221 (316)
T COG3204 149 DRALYLFTVDADTTVISAKV----QKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHAS 221 (316)
T ss_pred cceEEEEEEcCCccEEeccc----eEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccc
Confidence 77788877665432211111 01111111 22266788999999988777775 566666666533111 100000
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
.... ....+.. .-+.++.|-.+.+.+|+-+.+++.+.-.|.. |+.+..+
T Consensus 222 ~~~~--~~~~~f~----~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 222 LDPT--ADRDLFV----LDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCcc--cccceEe----eccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 0000 0000000 1145555323466777788888888777765 4444433
No 404
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.48 E-value=0.37 Score=39.44 Aligned_cols=202 Identities=10% Similarity=0.106 Sum_probs=121.3
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
.-..++-.|||. +-+++...+.|--.|..+++....-.. ....-..+...|++...+.-++. -|.-
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypLg-----------~Ga~Phgiv~gpdg~~Witd~~~--aI~R 128 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLG-----------SGASPHGIVVGPDGSAWITDTGL--AIGR 128 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCceEEEecC-----------CCCCCceEEECCCCCeeEecCcc--eeEE
Confidence 345677888987 566888888888888888876544322 12234556777877444332222 4555
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCccccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
.|-++.+. ..|... ............|.+.|.+..++..|.---.|... ..
T Consensus 129 ~dpkt~ev----------t~f~lp--~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-----------------~~ 179 (353)
T COG4257 129 LDPKTLEV----------TRFPLP--LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-----------------NV 179 (353)
T ss_pred ecCcccce----------EEeecc--cccCCCcccceeeCCCccEEEeeccccceecCccc-----------------Cc
Confidence 55554431 122211 13345667888999999988887643222222221 13
Q ss_pred ceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce--eEeecccccceEEEeecCCCcEEEEEecCCeEE
Q 013644 265 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 342 (439)
Q Consensus 265 ~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 342 (439)
+.++...... ....++ ..|+|..-++.-.++.|...|..++.. +..-.+....-..+--+|.|+.-+|....+.+.
T Consensus 180 i~vfpaPqG~-gpyGi~-atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~ 257 (353)
T COG4257 180 ISVFPAPQGG-GPYGIC-ATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLH 257 (353)
T ss_pred eeeeccCCCC-CCcceE-ECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceee
Confidence 3344433322 245566 689999888877777888888766622 222222123345566678888888888888899
Q ss_pred EeccCCCCC
Q 013644 343 LWAPMPTDF 351 (439)
Q Consensus 343 iw~~~~~~~ 351 (439)
.+|......
T Consensus 258 rfdPs~~sW 266 (353)
T COG4257 258 RFDPSVTSW 266 (353)
T ss_pred EeCcccccc
Confidence 988876554
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.42 E-value=0.45 Score=39.74 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=118.7
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-----CceeeEEeeccCCCCCCCCceeeeEEEeecCCC----------
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-----SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN---------- 169 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 169 (439)
.-+.|+++|.+. +.++....+...+||.... .....+... ..+... .....+.+.|+...
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP-~~~~~~---~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIP-APPPLA---AEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEec-CCCCCC---CCCCccEEEEeCCCceEEcCCCcc
Confidence 357899999987 5667777889999998711 111111111 101100 12235556665321
Q ss_pred -CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC-CCccEEEEEEc--cCCCEEEEec--CCeEEEEEc
Q 013644 170 -PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYS--NTSELLISYN--DELVYLFEK 243 (439)
Q Consensus 170 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~--d~~i~i~d~ 243 (439)
...++.++++|+|.-|...-..... .. ........ ...-...+++. ..+.+|..+. .++|.+||-
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~-------~~--~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRM-------TR--AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccc-------cc--cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 2346778899999999854322100 00 00001011 12223345554 3356777764 899999986
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc--cccceE
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVN 321 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~ 321 (439)
.-......-.+....+...-.+..+........|+-.. -.++++.=+.|..-|.|-+||+. |++++.+.. .-...+
T Consensus 170 ~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~-qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPW 247 (336)
T TIGR03118 170 SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQ-QDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPW 247 (336)
T ss_pred ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEe-cCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCc
Confidence 54321111101000000000000011111111122222 23444444555666899999986 777777742 224556
Q ss_pred EEeecC------CCcEEEEEecCCeEEEeccCCCCC
Q 013644 322 QLEPHP------HIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 322 ~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.|+..| .+.+|+---.||+|..+|..+++.
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 777755 456777777799999999987664
No 406
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=1.3 Score=41.78 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe--cCCCCceEEEEEc
Q 013644 35 DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL--GKHQGRVYKLAVE 112 (439)
Q Consensus 35 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~v~~i~~~ 112 (439)
-..|+|+++. |..+.+.+-.|. .+-.+.|+ +...|++...+|++.+|++.. ........ ......|..+.+.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHG-ELIGMGWS---DDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCC-Ceeeeccc---CCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEe
Confidence 3468898864 444444433443 78889998 677888889999999999843 32222111 2222345555555
Q ss_pred cCCCcEEEEeCCCCcEEEE
Q 013644 113 PGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~i~iw 131 (439)
.+| ++ .-..+|.+.+-
T Consensus 137 ~~G--Va-vlt~~g~v~~i 152 (829)
T KOG2280|consen 137 HNG--VA-VLTVSGQVILI 152 (829)
T ss_pred cCc--eE-EEecCCcEEEE
Confidence 565 22 33445555543
No 407
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.01 E-value=0.77 Score=38.46 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=125.8
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC-----ceeeeEEecC-----CCCceEEEEEccCCC-----------
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED-----GRMDTKRLGK-----HQGRVYKLAVEPGSP----------- 116 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~-----~~~~v~~i~~~~~~~----------- 116 (439)
..-+.|+++| .+.+-++....+...+||.... .......+.. .....+.+.|+....
T Consensus 23 ~N~WGia~~p--~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 23 RNAWGLSYRP--GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred cccceeEecC--CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 3457899999 8888888888889999998611 1111222331 224567777775432
Q ss_pred cEEEEeCCCCcEEEEEccCCCc---eeeEEeeccCCCCCCCCceeeeEEEeecC--CCCcEEEEeecCceEEEEeCcCCc
Q 013644 117 YIIYSCGEDGFVQHFDLRSDSA---TRLFYCSSFSENSKQPMNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 117 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
-.++.+++||+|.-|...-+.. ...+...... ...-...+++.. .+..+.++--..++|.+||-.-.+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCC-------CcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 1245778999999998654433 1111111100 112234455443 233445555578899999865433
Q ss_pred ccCCCCCCCC--ccccccccc-ccCCCccEEEEEEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCccccccccccee
Q 013644 192 WYSPISSDTP--VDTFCPRHL-IGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 267 (439)
Q Consensus 192 ~~~~~~~~~~--~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
....-....| ...+.+-.+ .-+..-.|+-..-.++.+-=+.+ .-|.|-+||+... .++.
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----------------l~~r 236 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----------------LLRR 236 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----------------EEEE
Confidence 2100000000 000000000 00111112222222333222222 3568888887653 4444
Q ss_pred EeCCCCcceeeeEEee------CCCCceEEEeCCCCeEEEEecCCCceeEeeccccc------ceEEEeecC
Q 013644 268 YSGHRNSQTVKGVNFF------GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH------VVNQLEPHP 327 (439)
Q Consensus 268 ~~~~~~~~~v~~~~~~------s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~~~~s~ 327 (439)
+.....-.....|+ . ...+.+|+---.||+|..||..+++.+..+....+ ..+.++|..
T Consensus 237 ~as~g~LNaPWG~a-~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 237 VASSGRLNAPWGLA-IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eccCCcccCCceee-eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 43322222234444 3 23567777666799999999999998877765432 457778755
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.01 E-value=0.61 Score=37.27 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=63.9
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEe--CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-cCCe
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 237 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 237 (439)
+.++|+.+...+.++-+.+-.|.-|| ..++........ +..+..........-.+++..+|.+.++. +.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i------~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------FDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCccee------EEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 67888877666677777777887777 666654332110 00011001111112234456677766665 6899
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
|...|..++ +.+..++-.... +++++|-.++-..+++
T Consensus 235 V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 235 VQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence 999999988 566666655544 8999965555455543
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.17 Score=49.58 Aligned_cols=126 Identities=17% Similarity=0.066 Sum_probs=75.7
Q ss_pred ceEEEEEccCCCcEEE-EeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEE
Q 013644 105 RVYKLAVEPGSPYIIY-SCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 183 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 183 (439)
++..+...+|.....+ ..+.+-.|..||+++-..........+..............++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4556666677553332 334445789999987544332211111100000012334567889887666777888899888
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccC
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNM 245 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 245 (439)
+..+...... +.. ..-....++++|+|.|+.++.+. .|.+..|....
T Consensus 182 V~~~~~~~~~--------v~s-------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLAQN--------VTS-------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhh--------hcc-------cCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 8876542210 000 12355689999999999999996 89999987653
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.93 E-value=1.2 Score=39.99 Aligned_cols=294 Identities=12% Similarity=0.097 Sum_probs=138.5
Q ss_pred CCcEEEEecCCCcEEEEEcccCceee--eEEecCCCCceEEEEEc---cCCCcEEEEeCCCCcEEEEEccCCC-------
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMD--TKRLGKHQGRVYKLAVE---PGSPYIIYSCGEDGFVQHFDLRSDS------- 137 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~v~~i~~~---~~~~~~l~s~~~dg~i~iwd~~~~~------- 137 (439)
+.+.|++|+..|.++||+....+... ...-..-..+|..+..- +....+.++.-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45689999999999999986544211 11111234677777653 2222223344566778888874321
Q ss_pred --ceeeEEeeccCCCCCCCCceeeeEEEeecCC----CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 138 --ATRLFYCSSFSENSKQPMNSIRLNAIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
.+..+..+.+. .....++.-|- +..++.+=+.||.+.+|+-+..... ..+
T Consensus 116 ~~~L~~~yeh~l~---------~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~---------------~~l 171 (418)
T PF14727_consen 116 QYQLELIYEHSLQ---------RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS---------------RFL 171 (418)
T ss_pred EEEEEEEEEEecc---------cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE---------------EEc
Confidence 11222222221 11233333332 2468888899999999997753211 111
Q ss_pred cCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCC-Ccc------cccccccceeEeCCCCcceeeeEEee
Q 013644 212 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSL-SPE------DLQKREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
.. ---...+.|.+.-..+++++ +..+.-|....-........ ... .......--.+.-......+..+. +
T Consensus 172 p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~-~ 249 (418)
T PF14727_consen 172 PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVR-F 249 (418)
T ss_pred CC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEE-c
Confidence 11 12223467777776666665 77888887643211100000 000 000111111111111111122222 2
Q ss_pred CCCCceEEEeCCCCeEEEEecCCCceeEeecccccce----EEE--eecCCC-cEEEEEecCCeEEEeccCCCCC-CCCC
Q 013644 284 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV----NQL--EPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLP 355 (439)
Q Consensus 284 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v----~~~--~~s~~~-~~l~s~~~dg~i~iw~~~~~~~-~~~~ 355 (439)
+.....+++-+. ..+.+.+. +|+.....+-.-.+. ..+ ...|.. ..++.++.++.+.||.=..-.. ..++
T Consensus 250 ~~~~~~IvvLge-r~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~ 327 (418)
T PF14727_consen 250 SSSESDIVVLGE-RSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP 327 (418)
T ss_pred CCCCceEEEEec-ceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC
Confidence 222222322222 34555554 243332222111111 111 112222 2477888899999886443222 1111
Q ss_pred CchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 356 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
+..-.+.......-+..+++.+.+|.+.+-=+.+.-
T Consensus 328 -~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 -HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred -CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 111112222233345689999999999998877663
No 411
>PHA03098 kelch-like protein; Provisional
Probab=95.79 E-value=1.1 Score=42.56 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=71.8
Q ss_pred CCCEEEEecCCC------eEEEEeCCCCcceeee-ecCCcccEEEEEEeecCCCcEEEEecCC-----CcEEEEEcccCc
Q 013644 25 TGDFLVSGSDDK------LVIFWDWKDRREKFSY-LSGHLDNIFQTRIMPFTDDRKIITSSAD-----GQVRLGQIFEDG 92 (439)
Q Consensus 25 ~~~~l~t~~~dg------~i~iw~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~ 92 (439)
++.+++.||.++ .+..||..+..-...- +...... .+++.. ++..++.||.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-PGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-ceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 455666676542 4667777665421110 0101111 122222 67777888765 346778887665
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCC------CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
......+...... .+++. -++ .+++.||.+ ..+..||..+++-...- ..+. ..... +++..
T Consensus 370 W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~------~r~~~-~~~~~ 436 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPI------SHYGG-CAIYH 436 (534)
T ss_pred eeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCc------cccCc-eEEEE
Confidence 4322222211111 11222 234 466677632 35788888776433211 1110 01111 22222
Q ss_pred CCCCcEEEEeecC--------ceEEEEeCcCCccc
Q 013644 167 PRNPNYFAVGGSD--------EYARVYDIRKCHWY 193 (439)
Q Consensus 167 ~~~~~~l~~~~~d--------g~i~i~d~~~~~~~ 193 (439)
++.+++.|+.+ ..+.+||..+.++.
T Consensus 437 --~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 437 --DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred --CCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 23677777643 23888998877653
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.63 E-value=1.1 Score=42.85 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=90.9
Q ss_pred CCEEEEecCCCeEEEEeCCCCccee------ee-e--------------cCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKF------SY-L--------------SGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~------~~-~--------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
..+|++|. .+.|.||+........ .+ . ......|+.|....+.+...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677765 5789999986533211 10 0 0011245555555444778899999999999
Q ss_pred EEEccc-------C----ce-------eeeEEecCCCCceEEEEEc--cCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 85 LGQIFE-------D----GR-------MDTKRLGKHQGRVYKLAVE--PGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 85 iw~~~~-------~----~~-------~~~~~~~~~~~~v~~i~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
+|.+++ . .. .+...+ .-...+++++++ ...+ ++|+++....|.+|-.......... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~~~r~~~-~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALVDERFYH-V 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcce-EEEEecCCceEEEEEEecccccccc-c
Confidence 997631 0 00 011112 234578999998 5554 7888888888888766543111100 0
Q ss_pred eccCCCCCCCCceeeeEEEeecCCC--Cc---EEEEeecCceEEEEeC
Q 013644 145 SSFSENSKQPMNSIRLNAIVIDPRN--PN---YFAVGGSDEYARVYDI 187 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~i~i~d~ 187 (439)
... .+...|.+++|-++. +. .+++++-.|.+.+|++
T Consensus 205 ~s~-------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSH-------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccc-------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 000 144568888887653 22 7888889999988887
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.63 E-value=1.6 Score=39.18 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=51.5
Q ss_pred eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccc-eEEEeecCC-----------------Cc-EEEEEe
Q 013644 276 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEPHPH-----------------IP-MFATCG 336 (439)
Q Consensus 276 ~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~-----------------~~-~l~s~~ 336 (439)
.+.+++ .+|++++.|+...=|+|.++|+.++..++.++|..+. +.-+..... .. +++-+-
T Consensus 309 ~~~~i~-~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESIC-LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEE-ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 377788 8999999999877899999999999988888875532 111111111 11 244456
Q ss_pred cCCeEEEeccCCCC
Q 013644 337 IEKTVKLWAPMPTD 350 (439)
Q Consensus 337 ~dg~i~iw~~~~~~ 350 (439)
.-|.|.||.+..+.
T Consensus 388 rRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 388 RRGILEVWSMRQGP 401 (415)
T ss_pred cCCeEEEEecCCCC
Confidence 67899999987654
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.57 E-value=1.6 Score=38.83 Aligned_cols=171 Identities=13% Similarity=0.104 Sum_probs=79.3
Q ss_pred EEEECCCCCEEEEe--c----CCCeEEEEeCCCCcceeeeec--CCcccEEEEEEeecCCCcEEEEec------------
Q 013644 19 AVEFNSTGDFLVSG--S----DDKLVIFWDWKDRREKFSYLS--GHLDNIFQTRIMPFTDDRKIITSS------------ 78 (439)
Q Consensus 19 ~~~~s~~~~~l~t~--~----~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~------------ 78 (439)
.+..-|+|++++|+ . .-|-+.+.|-++.+....... +...--+...|.| ..+.++|..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCC
Confidence 34455789888875 2 225677888776554443322 1223456677777 777777753
Q ss_pred --------CCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc--CCCcEEEEeCCCCcEEEEEc-cCCCce--eeEEee
Q 013644 79 --------ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP--GSPYIIYSCGEDGFVQHFDL-RSDSAT--RLFYCS 145 (439)
Q Consensus 79 --------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~-~~~~~~--~~~~~~ 145 (439)
...++.+||+.+.+.++...+.........+.|.. +..+-++.+.-.+.|..|-- ..++-. ..+...
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 23589999999888776666654434566777754 45554555555555555543 333211 111111
Q ss_pred ccC-CCCCCCC-------ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 146 SFS-ENSKQPM-------NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 146 ~~~-~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
... +....+. -..-++.+.++.++..+.++.=..|.++.||+....
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 100 0000000 023478899999985555666679999999998643
No 415
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.55 E-value=0.093 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.8
Q ss_pred cceEEEEECCC-C--CEEEEecCCCeEEEEeCCCC
Q 013644 15 GCVNAVEFNST-G--DFLVSGSDDKLVIFWDWKDR 46 (439)
Q Consensus 15 ~~I~~~~~s~~-~--~~l~t~~~dg~i~iw~~~~~ 46 (439)
++|.++.|+|. + ++|+.+-.-|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 57899999984 4 68888888899999999853
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.45 E-value=0.095 Score=29.15 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=27.2
Q ss_pred CceEEEEEccCCC--cEEEEeCCCCcEEEEEccCC
Q 013644 104 GRVYKLAVEPGSP--YIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 104 ~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 136 (439)
+.|.++.|+|... .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997554 58888888899999999963
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.21 Score=43.86 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=80.8
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee---ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
.+++|.++.||+|.+.||.--.+.+|.+++....+..... .+..+..|....|+. ..-+|.....| +-+|.+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEc
Confidence 3579999999999999999999999999998554433222 123345688899984 56666655544 5666654
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeC-CCCcEEEEEccCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG-EDGFVQHFDLRSDS 137 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 137 (439)
.... ..+....|...|+-..|.++.+-.|++.+ ...++.=+-++++.
T Consensus 141 pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 141 PEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 3222 22446678889999999998875555554 44455555555543
No 418
>PRK10115 protease 2; Provisional
Probab=95.25 E-value=3.3 Score=40.49 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=67.7
Q ss_pred cceEEEEECCCCCEEEEec-----CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC------CcE
Q 013644 15 GCVNAVEFNSTGDFLVSGS-----DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD------GQV 83 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i 83 (439)
-.+..+.++|||++|+.+. ....|++-|+.++..+...+.+- -..++|.+ |++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 3477789999999988753 22468899998876433332221 14589998 88776655432 367
Q ss_pred EEEEcccCceeeeEEecCCCCceE-EEEEccCCCcEEEEeC--CCCcEEEEEcc
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCG--EDGFVQHFDLR 134 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~--~dg~i~iwd~~ 134 (439)
..+++.++.......+........ .+..+.+++++++... .++.+.+++..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 778887762211122322222233 3334447776654433 34578888853
No 419
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.81 Score=40.46 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=65.3
Q ss_pred cCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 212 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
....++|.++.|++|++.+|+-. +..|.+++...... ......+.......|.+.+ |+.+ .-+
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~--------------~l~~~~~ck~k~~~IlGF~-W~~s-~e~ 126 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS--------------QLEYTQECKTKNANILGFC-WTSS-TEI 126 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch--------------hhHHHHHhccCcceeEEEE-EecC-eeE
Confidence 34466999999999999999985 99999998743310 0111111112222388888 4544 444
Q ss_pred EEeCCCCeEEEEecCC-CceeEeecccccceEEEeecCCCcE
Q 013644 291 MSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM 331 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~ 331 (439)
|..+..| +-+|-... .+.++..+.|...|+...|.++.+.
T Consensus 127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 4444433 55565433 2445566778888999999998875
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.18 E-value=0.15 Score=41.25 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=51.5
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 246 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~ 246 (439)
+++++-+.+|.+++||+.+++.......-.|+-.... .........|..+.++.+|.-+++-++|..+.|+...+
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 6899999999999999999875433211111110000 00014567789999999999999888899999987654
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=3.3 Score=39.40 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=46.9
Q ss_pred eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-ccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 276 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 276 ~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+..+. .||+.++|+--...|.|.+-+....+....+... ..+...++|.-+. -++.+.+..+.+....+...
T Consensus 218 ~~~ki~-VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V 291 (829)
T KOG2280|consen 218 SVVKIS-VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSV 291 (829)
T ss_pred eEEEEE-EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCcc
Confidence 366777 8999999999999999999998877777666521 1233366775443 22233344455555544443
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.00 E-value=1.8 Score=36.17 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=90.1
Q ss_pred cEEEEEEeecCCCcEEEEec---CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE-cc
Q 013644 59 NIFQTRIMPFTDDRKIITSS---ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD-LR 134 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd-~~ 134 (439)
.+.+.+.++ +++.++... ....+.++.. +..... .+. ...+..-.|++++. +.+....+...+++. ..
T Consensus 25 ~~~s~AvS~--dg~~~A~v~~~~~~~~L~~~~~--~~~~~~-~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSP--DGSRVAAVSEGDGGRSLYVGPA--GGPVRP-VLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECC--CCCeEEEEEEcCCCCEEEEEcC--CCccee-ecc--CCccccccccCCCC-EEEEEcCCCceEEEEecC
Confidence 688899999 998887665 3344555543 332211 122 23778889999976 555555556666663 33
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee--cCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
.+........... ....|..+.++|+|.+..+... .++.|.+--+.....- .+.....+.....
T Consensus 97 ~g~~~~~~v~~~~--------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g------~~~~l~~~~~~~~ 162 (253)
T PF10647_consen 97 SGTGEPVEVDWPG--------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG------VPRRLTGPRRVAP 162 (253)
T ss_pred CCcceeEEecccc--------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC------CcceeccceEecc
Confidence 3332221111100 0116999999999955544442 3467777665433211 0111112222323
Q ss_pred CCCccEEEEEEccCCCEEEEec--CCeEEE
Q 013644 213 KNNIHITGLAYSNTSELLISYN--DELVYL 240 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~--d~~i~i 240 (439)
.....+..+.|.+++.+++.+. ++.+..
T Consensus 163 ~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred cccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 4456789999999999888874 443433
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.98 E-value=0.029 Score=53.16 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=113.2
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC--CCceeeEEeeccCCCCCCCCce
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS--DSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
.+.+++-+....-. ....+++..+.|-.+.|-...---+. -.=|.+.+|++.- |+....+......+. .
T Consensus 110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~------g 180 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY------G 180 (1283)
T ss_pred hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC------C
Confidence 45666666543321 11225567788888887432211111 2236688888763 443333333222221 1
Q ss_pred eeeEEEeecCC--CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEE-----------Ec
Q 013644 158 IRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-----------YS 224 (439)
Q Consensus 158 ~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~ 224 (439)
..+.-+.|.|- +.-++..+-.++.+++..+.... +.++..|...+..++ .+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~l~~lS 244 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLKLASLS 244 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhhheeeC
Confidence 12233444442 22466667778888887765422 122233444444333 57
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC--------CCCceEEEeCC
Q 013644 225 NTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG--------PNDEYVMSGSD 295 (439)
Q Consensus 225 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s--------~~~~~l~~~~~ 295 (439)
|||..++... ||.+..|.+.-.. ....++....+.|.....+..++ .. +.-.++++++.
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g-----------~~~~rclhewkphd~~p~vC~lc-~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITG-----------KIVHRCLHEWKPHDKHPRVCWLC-HKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeec-----------cccHhhhhccCCCCCCCceeeee-ccccccCCccceeEEEEeccc
Confidence 8888877764 8877777654221 11223344444444322222221 11 01134555554
Q ss_pred -CCeEEEEecCCCceeEeecccccceEEEeecCCCc------------EEEEEecCCeEEEecc
Q 013644 296 -CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP------------MFATCGIEKTVKLWAP 346 (439)
Q Consensus 296 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~------------~l~s~~~dg~i~iw~~ 346 (439)
+..+++|.....+|+. ..--..|..+. -+++. .+++-+.++.|.+|.-
T Consensus 313 ~nre~k~w~~a~w~Cll--~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCLL--DKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred CCcceeEeeccchhhhh--hhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 4679999988777762 11123334343 22222 2445667888888864
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.97 E-value=1.5 Score=34.91 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=61.8
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---C---cEEEE---Ecc--cCceee
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---G---QVRLG---QIF--EDGRMD 95 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g---~i~iw---~~~--~~~~~~ 95 (439)
+.|..+.....|.+|++.............-+.|..+.++. .|++|++--.+ . .+|+| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 33433344578999999843322222224458899999999 99999986432 2 56664 222 111111
Q ss_pred eEEecC---------------------CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 96 TKRLGK---------------------HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 96 ~~~~~~---------------------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
.++.| -..++.+++..|-...++ .|+ ++.+.+|.+.....
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEE
Confidence 11112 134677888888655555 443 56788998775443
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=94.90 E-value=3.3 Score=38.60 Aligned_cols=108 Identities=8% Similarity=0.042 Sum_probs=54.1
Q ss_pred CCcEEEEecCCC-----cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--CcEEEEEccCCCceeeE
Q 013644 70 DDRKIITSSADG-----QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--GFVQHFDLRSDSATRLF 142 (439)
Q Consensus 70 ~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~ 142 (439)
++..++.|+.++ ++..||..++.......+........ ++ .-++ .+.+.||.+ ..+..||..+++-...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~-~iYviGG~~~~~sve~ydp~~n~W~~~- 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANN-KLYVVGGLPNPTSVERWFHGDAAWVNM- 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECC-EEEEECCcCCCCceEEEECCCCeEEEC-
Confidence 566677777543 46678877665443322222111222 22 2244 477777754 3577788765432211
Q ss_pred EeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc---eEEEEeCcCCcc
Q 013644 143 YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE---YARVYDIRKCHW 192 (439)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~ 192 (439)
..... .......+++ ++.+.+.|+.++ .+..||..+.+.
T Consensus 347 --~~l~~------~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 347 --PSLLK------PRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred --CCCCC------CCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 11110 0111222223 237888887653 467888877654
No 426
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.71 E-value=2 Score=35.39 Aligned_cols=239 Identities=13% Similarity=0.121 Sum_probs=137.8
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
.-..++-.| +|..-+++...+.|--.|..+++... ..+ +....-..|..-|++...+ +-+.. -|.-.|-++.+.
T Consensus 63 ap~dvapap--dG~VWft~qg~gaiGhLdP~tGev~~-ypL-g~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAP--DGAVWFTAQGTGAIGHLDPATGEVET-YPL-GSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CccccccCC--CCceEEecCccccceecCCCCCceEE-Eec-CCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcccce
Confidence 344566667 88888888877777777877776542 222 3334456677888887444 33222 455555555443
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC---------ceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
.+.-...+ + .........|.+.| ++-+++... +.|++|+...
T Consensus 137 t~f~lp~~----~----a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------------- 187 (353)
T COG4257 137 TRFPLPLE----H----ADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQ-------------------- 187 (353)
T ss_pred EEeecccc----c----CCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccCC--------------------
Confidence 32211111 1 24457788999987 777776531 2345555432
Q ss_pred cccCCCccEEEEEEccCCCEEEEe-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-cceeeeEEeeCCCC
Q 013644 210 LIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPND 287 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~s~~~ 287 (439)
...-..|+..|+|...++. .++.|...|...+.. ..+..... ......+- .+|-|
T Consensus 188 -----G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-----------------ev~p~P~~~~~gsRriw-sdpig 244 (353)
T COG4257 188 -----GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-----------------EVVPQPNALKAGSRRIW-SDPIG 244 (353)
T ss_pred -----CCCCcceEECCCCcEEEEeccccceEEcccccCCc-----------------ceecCCCcccccccccc-cCccC
Confidence 3345678889999877776 477788877766521 11111110 00022222 56777
Q ss_pred ceEEEeCCCCeEEEEecCCCcee-EeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCC
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLV-RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP 355 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 355 (439)
+.-++-...+.+..||..+..-. ..+.+.+..-.++.....++.-.+--.-|.|.-+|..+.+...++
T Consensus 245 ~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 245 RAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 87778777788888886654321 233333444556666666665554445567777777766654444
No 427
>PHA03098 kelch-like protein; Provisional
Probab=94.66 E-value=3.6 Score=39.05 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=35.8
Q ss_pred CCceEEEeCCC------CeEEEEecCCCcee--EeecccccceEEEeecCCCcEEEEEecC--------CeEEEeccCCC
Q 013644 286 NDEYVMSGSDC------GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT 349 (439)
Q Consensus 286 ~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~d--------g~i~iw~~~~~ 349 (439)
+++..+.|+.+ ..+..||..+.+-. ..+....... ++ ...++.+++.||.+ ..+.+||+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56777777632 45888998765322 2111111111 12 22356666777643 23788898877
Q ss_pred CCCCC
Q 013644 350 DFPPL 354 (439)
Q Consensus 350 ~~~~~ 354 (439)
+...+
T Consensus 467 ~W~~~ 471 (534)
T PHA03098 467 KWTEL 471 (534)
T ss_pred ceeeC
Confidence 65433
No 428
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=2.2 Score=35.56 Aligned_cols=155 Identities=10% Similarity=0.064 Sum_probs=90.6
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCc-ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL-DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
+.+..+.++ +++...+..+.-++|.|+.+.......-.-.. +--.++.. .|++...+..|.-+.+.|+.+...
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v----sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV----SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe----cCCEEEEeeccCcEEEEECCCCCC
Confidence 344555665 45666666777899999988765543311112 22333333 688988888676777889876654
Q ss_pred eee-EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 94 MDT-KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 94 ~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
... -+.......-..++.+-+ ..+.+..|+-+.+-|+........+...... ..+.++..+++- .+
T Consensus 161 P~lagrya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g---------~g~~sv~vsdnr-~y 227 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG---------PGTYSVSVSDNR-AY 227 (370)
T ss_pred ceeeeeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCCCeEEEEEecC---------CceEEEEecCCe-eE
Confidence 322 223333344456666654 3446668888999999887655554433322 146677777642 33
Q ss_pred EEEeecCceEEEEeCcCC
Q 013644 173 FAVGGSDEYARVYDIRKC 190 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~ 190 (439)
++. .+.-+.+-|....
T Consensus 228 ~vv--y~egvlivd~s~~ 243 (370)
T COG5276 228 LVV--YDEGVLIVDVSGP 243 (370)
T ss_pred EEE--cccceEEEecCCC
Confidence 333 2334566666553
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.60 E-value=2.6 Score=36.09 Aligned_cols=276 Identities=13% Similarity=0.130 Sum_probs=122.0
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeec-C-C---cccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLS-G-H---LDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~-h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
..++.+|.|..+.+-+|+|.. +. |+...++...-.... . . .-...++.|. +...+++| ..+. .+...
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~-g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~---~~~g~ivG-~~g~-ll~T~ 87 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAY-GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD---GNEGWIVG-EPGL-LLHTT 87 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETT-TE--EEEESSTTSS-EE-----S-----EEEEEEEE---TTEEEEEE-ETTE-EEEES
T ss_pred CCceEEEEEecCCEEEEEecC-CE--EEEECCCCccccccccCCCccceeeEEEEEec---CCceEEEc-CCce-EEEec
Confidence 458899999966666777754 53 333333322111111 1 1 1246677775 34444544 4443 23232
Q ss_pred ccCceeeeEEec-CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 89 FEDGRMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
..++.-....+. .-......+....++. .+++ +..|. +|....+ +.-..+... ....+..+..+
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~-~~~G~--iy~T~DgG~tW~~~~~~----------~~gs~~~~~r~ 153 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGS-AELA-GDRGA--IYRTTDGGKTWQAVVSE----------TSGSINDITRS 153 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTE-EEEE-ETT----EEEESSTTSSEEEEE-S--------------EEEEEE-
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEE-cCCCc--EEEeCCCCCCeeEcccC----------CcceeEeEEEC
Confidence 222221111111 1223334444444443 3333 33444 3333332 222222111 23457888888
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCC
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 246 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~ 246 (439)
+++ .+++++.....+.-||.-... +.+ ........|..|.|.|++.+.+.+..+.|+.=+....
T Consensus 154 ~dG-~~vavs~~G~~~~s~~~G~~~-------------w~~--~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 154 SDG-RYVAVSSRGNFYSSWDPGQTT-------------WQP--HNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp TTS--EEEEETTSSEEEEE-TT-SS--------------EE--EE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE
T ss_pred CCC-cEEEEECcccEEEEecCCCcc-------------ceE--EccCccceehhceecCCCCEEEEeCCcEEEEccCCCC
Confidence 887 777777665566677754311 111 1123467899999999999988888888888772111
Q ss_pred CCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec---ccccceEEE
Q 013644 247 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQL 323 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~ 323 (439)
...... ...........+..++ +.++++..++|+. |.+ +.....|+.-.... .-......|
T Consensus 218 ------------~~~w~~-~~~~~~~~~~~~ld~a-~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i 281 (302)
T PF14870_consen 218 ------------GETWSE-PIIPIKTNGYGILDLA-YRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRI 281 (302)
T ss_dssp ------------EEEE----B-TTSS--S-EEEEE-ESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EE
T ss_pred ------------cccccc-ccCCcccCceeeEEEE-ecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEE
Confidence 000000 0011112222378888 6777777777765 443 34444454433322 223467788
Q ss_pred eecCCCcEEEEEecCCeEEEe
Q 013644 324 EPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw 344 (439)
.|.+..+-++. +.+|.|.-|
T Consensus 282 ~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 282 VFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EEEETTEEEEE--STTEEEEE
T ss_pred EEcCCCceEEE-CCCcEEEEe
Confidence 88665555544 568877655
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.57 E-value=2.4 Score=40.12 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=70.6
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec--CCCCcEEEEeecCce
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID--PRNPNYFAVGGSDEY 181 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~ 181 (439)
....-+.-+.-++ +.++-+....+.|||.+.+....... +. ....|..+.|. |++ +.+++.+-...
T Consensus 30 ~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~---f~-------~~~~I~dLDWtst~d~-qsiLaVGf~~~ 97 (631)
T PF12234_consen 30 SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEES---FS-------EDDPIRDLDWTSTPDG-QSILAVGFPHH 97 (631)
T ss_pred CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeee---ec-------CCCceeeceeeecCCC-CEEEEEEcCcE
Confidence 3445555555555 44445555679999999877433222 11 35568888874 566 55555566678
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEcc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN 244 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~ 244 (439)
|.+|--.........+.-.++..+ .+......+|....|.++|.++++ +++.+.+++-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i---~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKI---DISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEE---EeecCCCCCccceeEecCCeEEEE-eCCEEEEECCC
Confidence 888764332222111111122211 111222367889999999876654 46778888743
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=94.53 E-value=3 Score=36.59 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=85.3
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
-...+..+.+.| ++.+++++ ..|.+.. ....+..........-...++++.+.++++ ++++ +..|.+++=....
T Consensus 171 ~~g~~~~i~~~~--~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~ 244 (334)
T PRK13684 171 AAGVVRNLRRSP--DGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDD 244 (334)
T ss_pred CcceEEEEEECC--CCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCC
Confidence 346788899988 77666554 4454432 111222111112223456789999999987 4434 4567664322333
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
+..-........ .....+.++.+.|++ ..+ .++.+|.+.. ....++.- ........-.
T Consensus 245 G~sW~~~~~~~~-------~~~~~l~~v~~~~~~-~~~-~~G~~G~v~~-S~d~G~tW------------~~~~~~~~~~ 302 (334)
T PRK13684 245 LESWSKPIIPEI-------TNGYGYLDLAYRTPG-EIW-AGGGNGTLLV-SKDGGKTW------------EKDPVGEEVP 302 (334)
T ss_pred CCccccccCCcc-------ccccceeeEEEcCCC-CEE-EEcCCCeEEE-eCCCCCCC------------eECCcCCCCC
Confidence 322111111000 012347788898865 444 4555665543 33333211 1100001112
Q ss_pred ccEEEEEEccCCCEEEEecCCeEEEEEc
Q 013644 216 IHITGLAYSNTSELLISYNDELVYLFEK 243 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~d~~i~i~d~ 243 (439)
.....+.+..+++.++++..|.|..|+-
T Consensus 303 ~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 303 SNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred cceEEEEEeCCCceEEECCCceEEEecC
Confidence 4578888888889999999999888764
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.51 E-value=5.4 Score=39.33 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=45.4
Q ss_pred EEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC---------------CCcEEEEeecCceE
Q 013644 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---------------NPNYFAVGGSDEYA 182 (439)
Q Consensus 118 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~l~~~~~dg~i 182 (439)
.++.++.++.|.-.|.++++.+-.+......... ..+ .....+++... ....++.++.|+.+
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~--~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG--RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc--ccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 4667888899999999999877665432211000 000 01122222110 12477888899999
Q ss_pred EEEeCcCCcccCC
Q 013644 183 RVYDIRKCHWYSP 195 (439)
Q Consensus 183 ~i~d~~~~~~~~~ 195 (439)
.-.|.++++....
T Consensus 273 iALDA~TGk~~W~ 285 (764)
T TIGR03074 273 IALDADTGKLCED 285 (764)
T ss_pred EEEECCCCCEEEE
Confidence 9999999886543
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=5.9 Score=39.78 Aligned_cols=152 Identities=7% Similarity=0.011 Sum_probs=86.6
Q ss_pred eeEEEeecCCCCcEEEE--eecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEec
Q 013644 159 RLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYN 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~ 234 (439)
.+..+...++. ...++ .+.+-.|..||++......... ..++ +-............++.|+|.- ..++...
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl---~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPL---KNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh-cccc---ccccchhccccccccccccCCccchhhhhcc
Confidence 35555556654 33332 2333478899998754322111 1111 1111222334456677888764 3344446
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
|+.|++..+.... .....+ ......++++ |+|.|+.++.|-..|++.-|... ++....+.
T Consensus 177 dlsl~V~~~~~~~---------------~~v~s~---p~t~~~Tav~-WSprGKQl~iG~nnGt~vQy~P~-leik~~ip 236 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLA---------------QNVTSF---PVTNSQTAVL-WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP 236 (1405)
T ss_pred ccchhhhhhhhhh---------------hhhccc---CcccceeeEE-eccccceeeEecCCCeEEEeecc-cceeeccc
Confidence 8888887664321 111111 1122378888 89999999999999999988754 33333332
Q ss_pred cc----ccceEEEeecCCCcEEEEE
Q 013644 315 GD----RHVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 315 ~h----~~~v~~~~~s~~~~~l~s~ 335 (439)
.. ...|.+|+|-....+++.-
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CCCcCCCcceeEEEEecceeEEEEe
Confidence 21 3679999998776666654
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.41 E-value=4 Score=39.81 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=56.5
Q ss_pred CCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCC-CCCCcc--cccccccceeEeCCCCcceeeeEEeeCCC---C
Q 013644 214 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSP-LSLSPE--DLQKREEPQVYSGHRNSQTVKGVNFFGPN---D 287 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~s~~---~ 287 (439)
....|..+.++|+|++++..+...|.+..+....+... +..... ..+....-..+-.......|..+. |+|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~-WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR-WHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE-EcCCCCCC
Confidence 35679999999999999999878888877754211110 000000 000000001111122234588888 6775 5
Q ss_pred ceEEEeCCCCeEEEEecCCC
Q 013644 288 EYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~ 307 (439)
..|+.-+.|+.+|+||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 88999999999999998754
No 435
>PRK10115 protease 2; Provisional
Probab=94.28 E-value=5.9 Score=38.82 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=47.8
Q ss_pred ccEEEEEEeecCCCcEEEEecC-----CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-----Cc
Q 013644 58 DNIFQTRIMPFTDDRKIITSSA-----DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-----GF 127 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~ 127 (439)
-.+..+.++| ++++|+.+.. ...|++-|+.++..+. ..+.+- -..++|.++++.++++...+ ..
T Consensus 127 ~~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 3466778888 9998876533 2358888887765321 122211 14699999998777765432 35
Q ss_pred EEEEEccCC
Q 013644 128 VQHFDLRSD 136 (439)
Q Consensus 128 i~iwd~~~~ 136 (439)
|+.+++.++
T Consensus 201 v~~h~lgt~ 209 (686)
T PRK10115 201 VWRHTIGTP 209 (686)
T ss_pred EEEEECCCC
Confidence 777888877
No 436
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.22 E-value=6.2 Score=38.91 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcc-------cEEEEEEee--------------cCCCcEEEEecCCCcEE
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD-------NIFQTRIMP--------------FTDDRKIITSSADGQVR 84 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~-------~v~~~~~~~--------------~~~~~~l~s~~~dg~i~ 84 (439)
+..|..++.++.|.-.|..+++.+-++...... ....+.+.. ...+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788889999999988876654221110 012233321 11345788888999999
Q ss_pred EEEcccCceeeeEEecCCCCce-------------EEEEEcc---CCCcEEEEeCC----------CCcEEEEEccCCCc
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRV-------------YKLAVEP---GSPYIIYSCGE----------DGFVQHFDLRSDSA 138 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v-------------~~i~~~~---~~~~~l~s~~~----------dg~i~iwd~~~~~~ 138 (439)
-.|.++++....+. ..+.| ..+.-.| ++ .++.|+. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~fg---~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCEDFG---NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEEec---CCCceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99998887663321 11111 0111111 22 3445532 68899999999998
Q ss_pred eeeEEe
Q 013644 139 TRLFYC 144 (439)
Q Consensus 139 ~~~~~~ 144 (439)
.-.+..
T Consensus 349 ~W~~~~ 354 (764)
T TIGR03074 349 VWAWDP 354 (764)
T ss_pred eeEEec
Confidence 877653
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=94.22 E-value=4.8 Score=37.55 Aligned_cols=146 Identities=12% Similarity=-0.024 Sum_probs=70.1
Q ss_pred CCCEEEEecCCC-----eEEEEeCCCCcceeee-ecCCcccEEEEEEeecCCCcEEEEecCC--CcEEEEEcccCceeee
Q 013644 25 TGDFLVSGSDDK-----LVIFWDWKDRREKFSY-LSGHLDNIFQTRIMPFTDDRKIITSSAD--GQVRLGQIFEDGRMDT 96 (439)
Q Consensus 25 ~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~~~~~~ 96 (439)
++.+++.||.++ .+..||..+..-.... +...... .+++. - ++...+.|+.+ .++..|+..+++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~--~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-A--NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-E--CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 455667777543 4667777665321110 1111111 12222 2 67777888764 4577888766554332
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCC---cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEE
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDG---FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYF 173 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 173 (439)
..+....... +++ .-++ .+.+.||.++ .+..||.++++-...- ... . .......+++ ++.+.
T Consensus 347 ~~l~~~r~~~-~~~-~~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~---~m~----~--~r~~~~~~~~---~~~IY 411 (480)
T PHA02790 347 PSLLKPRCNP-AVA-SINN-VIYVIGGHSETDTTTEYLLPNHDQWQFGP---STY----Y--PHYKSCALVF---GRRLF 411 (480)
T ss_pred CCCCCCCccc-EEE-EECC-EEEEecCcCCCCccEEEEeCCCCEEEeCC---CCC----C--ccccceEEEE---CCEEE
Confidence 2222111111 122 2234 3777777654 4667887765432211 110 0 0111122223 23677
Q ss_pred EEeecCceEEEEeCcCCcc
Q 013644 174 AVGGSDEYARVYDIRKCHW 192 (439)
Q Consensus 174 ~~~~~dg~i~i~d~~~~~~ 192 (439)
+.|+ .+.+||..+.++
T Consensus 412 v~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 412 LVGR---NAEFYCESSNTW 427 (480)
T ss_pred EECC---ceEEecCCCCcE
Confidence 7764 467899877654
No 438
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.19 E-value=6.5 Score=38.98 Aligned_cols=210 Identities=15% Similarity=0.130 Sum_probs=108.2
Q ss_pred EEEecCCCeEEEEeCCCCcceeee-------ecCCcccEEEEEEeecCCCcEEEEecCC---CcEEEEEcccC-------
Q 013644 29 LVSGSDDKLVIFWDWKDRREKFSY-------LSGHLDNIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFED------- 91 (439)
Q Consensus 29 l~t~~~dg~i~iw~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~------- 91 (439)
++.-...|.+++|-.+........ +..-...|+..++.+..+|..++.++.+ +.|++|.+.-.
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 444556799999977433222221 1123456776677654477666655554 78888754210
Q ss_pred ---ceeeeEEec--------C-------------CCCceEEEEEcc------CCCcEEEEeCC----CCcEEEEEccCCC
Q 013644 92 ---GRMDTKRLG--------K-------------HQGRVYKLAVEP------GSPYIIYSCGE----DGFVQHFDLRSDS 137 (439)
Q Consensus 92 ---~~~~~~~~~--------~-------------~~~~v~~i~~~~------~~~~~l~s~~~----dg~i~iwd~~~~~ 137 (439)
+..+...+. . .-..++.+.|-+ ..+.++++.+. ...|.-|.++...
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 010111110 0 112566677765 22334444432 3468999988654
Q ss_pred ceeeEEeeccC---CCC-CC-----------CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCC----CC
Q 013644 138 ATRLFYCSSFS---ENS-KQ-----------PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI----SS 198 (439)
Q Consensus 138 ~~~~~~~~~~~---~~~-~~-----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~ 198 (439)
..-.-...+.. ... .. -.....|.++....-+ ..++....||+|.++|-.+.+.+... ..
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 11100000000 000 00 0123446677766655 68999999999999999988766544 11
Q ss_pred CCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEE
Q 013644 199 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 239 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~ 239 (439)
...+.......+.......+..++|||.+..++.-. ++.+.
T Consensus 304 ~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 111111111111111122556789999998777765 77644
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.16 E-value=0.38 Score=39.01 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=51.5
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCceeEee-------c-------ccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|....|+.+=
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4458899999999999999999988754322 1 2446788999998888777665 57889998765
Q ss_pred CCC
Q 013644 349 TDF 351 (439)
Q Consensus 349 ~~~ 351 (439)
+..
T Consensus 97 ~~W 99 (219)
T PF07569_consen 97 GCW 99 (219)
T ss_pred cee
Confidence 543
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.94 E-value=4.4 Score=36.19 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=52.9
Q ss_pred cEEEEEEeecCCCcEEEEec-----------CCC-cEEEEEcccC--ceeeeEEecCCCCceEEEEEccCCCcEEEEeCC
Q 013644 59 NIFQTRIMPFTDDRKIITSS-----------ADG-QVRLGQIFED--GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~-----------~dg-~i~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 124 (439)
....|+|.+ +|+++++-. ..+ .|.+++-.++ .......+.........+++.+++ ++++ ..
T Consensus 15 ~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 15 NPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 456778887 777776642 122 6666654322 221222333334456889999887 4544 33
Q ss_pred CCcEEEEEccCC-----CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 125 DGFVQHFDLRSD-----SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 125 dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
....++.|.... +....+.. +.... ..+......++|.|+| .+.++-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~--~~~~~--~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSG--FGGQI--NNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEc--cCCCC--CcccccccCceECCCC-CEEEecc
Confidence 332333344321 21122211 11100 0013346789999987 4544433
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.81 E-value=2.8 Score=33.40 Aligned_cols=163 Identities=13% Similarity=0.117 Sum_probs=83.3
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC---C---cEEEE---Ecc--CCCcee
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED---G---FVQHF---DLR--SDSATR 140 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g---~i~iw---d~~--~~~~~~ 140 (439)
+.|+.+...+.|.+|++.+........+. .-+.|..+.++..|+++ +|--.+ . .+|+| +.. ..+.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYl-vTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYL-VTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceE-EEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 55555566778999999855554444554 34889999999999964 453221 2 55664 332 112222
Q ss_pred e-EEeeccCCCCCC----------CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 141 L-FYCSSFSENSKQ----------PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 141 ~-~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
. +......+.... .+-..+..+++..|-.+++++. + ++.+.+|.+....... .......|....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~~~~~---~~~~~lDFe~~l 181 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQTIQS---EKFSFLDFERSL 181 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEEEEec---ccccEEechhhh
Confidence 1 111011110000 0123456788888877665554 3 3588899877644210 000111111111
Q ss_pred cccCCCccEEEEEEccCCCEEEEecCCeEEEEEc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYNDELVYLFEK 243 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~ 243 (439)
+.-........+++ -+.++|..++..++++.+
T Consensus 182 ~~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred hheecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 11111122333333 356888888888887764
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.58 E-value=2.8 Score=37.90 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCcEEEE-ecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCc-------EEEEeCCCCcEEEEEccCCC-cee
Q 013644 70 DDRKIIT-SSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY-------IIYSCGEDGFVQHFDLRSDS-ATR 140 (439)
Q Consensus 70 ~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~-~~~ 140 (439)
+.++|+. |+....+.--|++.++.+.. +.-|... -+.|.|..+. .| .|-.+..|.-.|.+... .+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvvee--W~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEE--WDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeE--eecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCcee
Confidence 4455543 44455666667777766644 4434433 4666665321 24 45556666666665433 222
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEE
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 220 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (439)
......+. ......+..-... .++|+|+..|.|++||--... ....+++-...|..
T Consensus 553 v~esKdY~-------tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~ 608 (776)
T COG5167 553 VVESKDYK-------TKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKH 608 (776)
T ss_pred eeeehhcc-------ccccccccccccC--ceEEEecCCCceeeehhhcch---------------hhhcCcccccceee
Confidence 22211111 1222334433333 499999999999999954322 22333555778999
Q ss_pred EEEccCCCEEEEecCCeEEEEEccC
Q 013644 221 LAYSNTSELLISYNDELVYLFEKNM 245 (439)
Q Consensus 221 ~~~~~~~~~l~~~~d~~i~i~d~~~ 245 (439)
+..+.+|+++.+.....+.+-|+.-
T Consensus 609 idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 609 IDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eEeecCCcEEEEeecceEEEEeccc
Confidence 9999999999988888899988754
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.57 E-value=5.2 Score=35.76 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=55.5
Q ss_pred cceEEEEECCCCCEEEEec-----------CCC-eEEEEeCCCC--cc-eeeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 15 GCVNAVEFNSTGDFLVSGS-----------DDK-LVIFWDWKDR--RE-KFSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~-----------~dg-~i~iw~~~~~--~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
.....|+|.++|+++++-. ..+ .|.+++-.++ .. ..+.+.........+++.+ ++ +++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~--~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV--GG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec--CC-EEE-eCC
Confidence 4567899999999877642 223 6777764432 21 1122223334567889987 77 444 444
Q ss_pred CCcEEEEEcccC-----c-eeeeEEecC----CCCceEEEEEccCCCcEEEEeC
Q 013644 80 DGQVRLGQIFED-----G-RMDTKRLGK----HQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 80 dg~i~iw~~~~~-----~-~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
....++.+.... + ......+.. +......++|.|+|. +.++.+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 432233343221 1 111112222 234577899999997 444433
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.54 E-value=0.013 Score=51.40 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=96.3
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe--cCCeE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV 238 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i 238 (439)
....|.|.+.+ ++.++.+..+..||-....... ....+....++|..++..++.. ..+.+
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~agq~~le-----------------~n~tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAGQVILE-----------------LNPTGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhcceecc-----------------cCCchhHhhhhhccccchhhhhhhcCCCe
Confidence 34566776644 7777888888889865433211 1123445567888887655544 38999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
.+||+.+.. .+.+...... -.++..|++.+..++.|...|.+.|++..+.+.+..+..|..
T Consensus 100 ylwd~n~ey-----------------tqqLE~gg~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R 160 (615)
T KOG2247|consen 100 YLWDVNSEY-----------------TQQLESGGTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR 160 (615)
T ss_pred eechhhhhh-----------------HHHHhccCcc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc
Confidence 999998651 1222211111 122222899999999999999999999988877776666999
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEe
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLW 344 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw 344 (439)
.+++++|.+.+. .+.++.|..+.+-
T Consensus 161 Rgtq~av~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 161 RGTQIAVTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred ceeEEEecccce-eeecCcHHHHHHh
Confidence 999999998764 4455555544433
No 445
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.50 E-value=5 Score=35.38 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=86.7
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC---C---------------
Q 013644 19 AVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---D--------------- 80 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d--------------- 80 (439)
...++|+.+.++-......|+--|+.+.+.. .+.......+-...|....++..++-.-. |
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 4556677777665544567888888887643 33344555555566754224555433211 1
Q ss_pred ----CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeC---CCCc-EEEEEccCCC-ceeeEEeeccCCCC
Q 013644 81 ----GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG---EDGF-VQHFDLRSDS-ATRLFYCSSFSENS 151 (439)
Q Consensus 81 ----g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~---~dg~-i~iwd~~~~~-~~~~~~~~~~~~~~ 151 (439)
..|.--|+.+++... +..-...+..+.|+|..+.+|+-|- .+.. -+||-+++.. ..+.+... .
T Consensus 164 a~p~~~i~~idl~tG~~~~---v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~--- 235 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGERKV---VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--M--- 235 (386)
T ss_dssp C---EEEEEEETTT--EEE---EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------
T ss_pred hCCCceEEEEECCCCceeE---EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC--C---
Confidence 233344555554432 2224566788999998887776543 2332 3667665432 22222111 0
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEee----cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 227 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (439)
....+..=-|.|+|..+...+. .+..|.-+|+.+++.. .+.. .....-+..+++|
T Consensus 236 ----~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~---------------~~~~--~p~~~H~~ss~Dg 294 (386)
T PF14583_consen 236 ----EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR---------------RLME--MPWCSHFMSSPDG 294 (386)
T ss_dssp ----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE---------------EEEE--E-SEEEEEE-TTS
T ss_pred ----CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce---------------EEEe--CCceeeeEEcCCC
Confidence 1233555568888865555433 2345666777765410 0000 1123345567888
Q ss_pred CEEEEe
Q 013644 228 ELLISY 233 (439)
Q Consensus 228 ~~l~~~ 233 (439)
++++.-
T Consensus 295 ~L~vGD 300 (386)
T PF14583_consen 295 KLFVGD 300 (386)
T ss_dssp SEEEEE
T ss_pred CEEEec
Confidence 988764
No 446
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.43 E-value=3.9 Score=33.93 Aligned_cols=115 Identities=7% Similarity=-0.061 Sum_probs=70.0
Q ss_pred cccEEEEEEeecCCCcEEEEecCCC--cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADG--QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
..-...+.|.. ++.++-+.+.-| .|+.+|+.+++......+... ---..++...+ .+..-.=.++...+||..
T Consensus 44 ~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d--~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGD--KLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETT--EEEEEESSSSEEEEEETT
T ss_pred cccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECC--EEEEEEecCCeEEEEccc
Confidence 34456788866 888888887765 789999998887655555432 22234555443 355566778899999999
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
+.+.+..+... ..=..++. ++ ..|+.+.....++.+|..+.+
T Consensus 119 tl~~~~~~~y~------------~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 119 TLKKIGTFPYP------------GEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp TTEEEEEEE-S------------SS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-S
T ss_pred cceEEEEEecC------------CcceEEEc--CC-CEEEEECCccceEEECCcccc
Confidence 88777666431 12344553 34 455555556688888877643
No 447
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.29 E-value=9.4 Score=37.89 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=74.0
Q ss_pred ccEEEEEEcc----C---CCEEEEec-----CCeEEEEEccCCCCCCCCCCCcc--------cccccccceeEeCCCCcc
Q 013644 216 IHITGLAYSN----T---SELLISYN-----DELVYLFEKNMGLGPSPLSLSPE--------DLQKREEPQVYSGHRNSQ 275 (439)
Q Consensus 216 ~~i~~~~~~~----~---~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 275 (439)
..++.+.|-+ . -.++++.+ ...|..|.+..........+..- ........+.+..-....
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 4566676654 1 23555553 34799999877542211111100 011111112222222223
Q ss_pred eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee----cc---------------cccceEEEeecCCCcEEEEEe
Q 013644 276 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----VG---------------DRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 276 ~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~---------------h~~~v~~~~~s~~~~~l~s~~ 336 (439)
.|.++. ...-+.+++..-.||+|.++|..+.+.+... .. +-.++..++|||.+..++.-.
T Consensus 261 ~V~si~-~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSIT-SPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred eEEEEE-ecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 477777 5667789999999999999998877554333 10 011344588999999999999
Q ss_pred cCCeEE
Q 013644 337 IEKTVK 342 (439)
Q Consensus 337 ~dg~i~ 342 (439)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999855
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.24 E-value=4.3 Score=36.80 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 285 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 285 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
....|+|+++..|-|++||.-.-+....+.+-...|..+..+.+|+++++.+. ..+.+-++
T Consensus 571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 35579999999999999996544445556667788999999999997665553 35555554
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=93.21 E-value=5.5 Score=35.00 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=83.3
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEE-EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecC
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARV-YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 235 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d 235 (439)
...+..+.+.|++ .++++ +..|.+.. +|-. ++ .+.. ........++.+.+.+++++++++..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~~g-g~------------tW~~--~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWEPG-QT------------AWTP--HQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcCCC-CC------------eEEE--eeCCCcccceeeeEcCCCCEEEEecC
Confidence 3457888999875 45544 44555443 2211 11 0010 11233567889999999999888887
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec-
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV- 314 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 314 (439)
|.+++=....+.. .+.+. .........+..+. +.++++.+++| .+|.+. .....++.-....
T Consensus 235 G~~~~~s~d~G~s-------------W~~~~-~~~~~~~~~l~~v~-~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 235 GQIRFNDPDDLES-------------WSKPI-IPEITNGYGYLDLA-YRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred CEEEEccCCCCCc-------------ccccc-CCccccccceeeEE-EcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCc
Confidence 7765322333210 01000 00000112366777 67777766555 456654 3444444433332
Q ss_pred --ccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 315 --GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 315 --~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.-......+.|..+++.++ .+..|.|.-|+-.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 298 GEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred CCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence 1223577788776666655 5568888877653
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=5 Score=40.89 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=26.7
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCC
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD 45 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 45 (439)
.....++|+|...++|.+...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4567789999999999999999999998644
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.59 E-value=0.95 Score=40.00 Aligned_cols=168 Identities=16% Similarity=0.170 Sum_probs=91.8
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCC----ceE-EEEEccCCCcEEEEeCCCCc
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQG----RVY-KLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~v~-~i~~~~~~~~~l~s~~~dg~ 127 (439)
+..-...+..+-..| +++.|..-+. .++.++++.+......+......+ .|+ .+.....+. -+.++..||-
T Consensus 216 L~~~~~~v~qllL~P--dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~ 291 (733)
T COG4590 216 LSVPFSDVSQLLLTP--DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGL 291 (733)
T ss_pred cCCCccchHhhEECC--CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCc
Confidence 344456677788888 9998887665 688888886533221111111111 122 112223343 3557888998
Q ss_pred EEEE-EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 128 VQHF-DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 128 i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
|.-| |.+.+..........+.- ....+..+.-.. +.+-+++-+..|++.++.-...+.+
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l------~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l------------- 351 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKL------APAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL------------- 351 (733)
T ss_pred eeeeeeeecCCCCcceeeecccc------Ccccceeecccc-ccceEEEEcCCCceeeeecccCcce-------------
Confidence 8877 555433221111111100 111222222211 2355667777788777765443211
Q ss_pred ccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCC
Q 013644 207 PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 247 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 247 (439)
....-...+.-++++|++.+|++-..+.++++.+++..
T Consensus 352 ---L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 352 ---LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred ---ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 11112235667899999999999999999999988763
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.52 E-value=2.9 Score=40.16 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=75.8
Q ss_pred ceEEEEECC--CCCEEEEecCCCeEEEEeCCCC-----------cc-------eeeeecCCcccEEEEEEe--ecCCCcE
Q 013644 16 CVNAVEFNS--TGDFLVSGSDDKLVIFWDWKDR-----------RE-------KFSYLSGHLDNIFQTRIM--PFTDDRK 73 (439)
Q Consensus 16 ~I~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~-----------~~-------~~~~~~~h~~~v~~~~~~--~~~~~~~ 73 (439)
.|+.|.... ....|+.+..||.|.+|.+++- .. ...+...-...++.++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~--~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK--KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC--cceE
Confidence 355555443 4467899999999999975210 00 001112334578999998 6 7888
Q ss_pred EEEecCCCcEEEEEcccC-ceeeeEEecCCCCceEEEEEccCC--C---cEEEEeCCCCcEEEEEc
Q 013644 74 IITSSADGQVRLGQIFED-GRMDTKRLGKHQGRVYKLAVEPGS--P---YIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 74 l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~--~---~~l~s~~~dg~i~iwd~ 133 (439)
||+++....|.||-.... .......-..+...|-+|+|.++. . -.+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888988876542 111111112366788899998754 2 15778889999999888
No 453
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=5.8 Score=33.27 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=89.4
Q ss_pred cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
.+-+..+.++ +++...+..+.-++|.|+.+.........-.-.+--.++.. .|+ .++.+..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn-~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGN-YAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCC-EEEEeeccCcEEEEECCCC
Confidence 3455666775 56777777888899999987665433222212233344444 455 4556665666778898876
Q ss_pred CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC-CC
Q 013644 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NN 215 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (439)
+.....-..... ......++.+ | ++-..+..|+-+.+.|+.... .+..+-.. ..
T Consensus 159 ssP~lagrya~~--------~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~--------------sPvli~~~n~g 213 (370)
T COG5276 159 SSPQLAGRYALP--------GGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPH--------------SPVLIGSYNTG 213 (370)
T ss_pred CCceeeeeeccC--------CCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCC--------------CCeEEEEEecC
Confidence 654433222211 1112344554 3 677777789999999998743 11111111 12
Q ss_pred ccEEEEEEccCCCEEEEecCCeEEEEEccCC
Q 013644 216 IHITGLAYSNTSELLISYNDELVYLFEKNMG 246 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~ 246 (439)
..+.++..+++-.+++....+ +.+-|..+.
T Consensus 214 ~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ 243 (370)
T COG5276 214 PGTYSVSVSDNRAYLVVYDEG-VLIVDVSGP 243 (370)
T ss_pred CceEEEEecCCeeEEEEcccc-eEEEecCCC
Confidence 257777777776666655443 555565554
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.10 E-value=0.024 Score=49.86 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=95.5
Q ss_pred EEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce
Q 013644 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 60 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 139 (439)
.....|-| .+.-++.++.+..+..||-...... -...++....++|..+++.+++.+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~--e~~nlavaca~tiv~~YD~agq~~l----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 37 PIIHRWRP--EGHNLAVACANTIVIYYDKAGQVIL----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cceeeEec--CCCceehhhhhhHHHhhhhhcceec----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 34456777 6666888888888888886432221 11234566778899888877778888999999999876433
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEE
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (439)
+.-.... +.... +.|++.. ..++.+...|.+++++..+.+. ......|...++
T Consensus 111 qLE~gg~---------~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~---------------iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 111 QLESGGT---------SSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRR---------------IIVMGKHQRRGT 163 (615)
T ss_pred HHhccCc---------chHHH--HhhccCC-ccccccccccceEEEeccchhh---------------hhhhccccccee
Confidence 3222111 11111 5677744 6788888899999999876442 112234788899
Q ss_pred EEEEccCCCEEEEecC
Q 013644 220 GLAYSNTSELLISYND 235 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~d 235 (439)
++++.+.+..+....|
T Consensus 164 q~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 164 QIAVTLEDYVILCDCD 179 (615)
T ss_pred EEEecccceeeecCcH
Confidence 9999998876655433
No 455
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=7.1 Score=35.62 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEE---------ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC--CcE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFD---------LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN--PNY 172 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~ 172 (439)
-.|..+..++.|.. ++-.|.+|.+.++= ++.++.............--.......+..++|+|+. ...
T Consensus 104 feV~~vl~s~~GS~-VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSH-VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCCce-EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 35778888999984 55667778655543 1233322221111111100011123457788999986 567
Q ss_pred EEEeecCceEEEEeCcCCccc
Q 013644 173 FAVGGSDEYARVYDIRKCHWY 193 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~ 193 (439)
|..-+.|..+++||+.....+
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 777888999999999875543
No 456
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.75 E-value=20 Score=38.05 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=81.9
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
.|...++.|.-+++|..+=. .|+.++.||.....-.. .-..-...+..+.-.- ||+..+ .++.. |-|+..+
T Consensus 360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qg--dG~lYA---k~~~~-l~nLSs~ 430 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQG--DGKLYA---KDDDT-LVNLSSG 430 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccC--CCceEe---cCCCc-eeecCCC
Confidence 46666777777777765543 35667777755432110 0001122333333332 443333 11111 2244333
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc------eeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA------TRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
.... .....+.+...++++.--+.++.....+.+|++....- ...+.... ......+|.+
T Consensus 431 ~~~~-----~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d---------G~a~A~~VgL 496 (1774)
T PF11725_consen 431 QMSE-----AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD---------GKAQAQSVGL 496 (1774)
T ss_pred Ccch-----hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccC---------Cchhhhheee
Confidence 2211 12256778888999985455666666779998876421 11222111 1225777888
Q ss_pred cCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 166 DPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
+++ .|+++..+|.++.=++...+
T Consensus 497 s~d---rLFvADseGkLYsa~l~~~~ 519 (1774)
T PF11725_consen 497 SND---RLFVADSEGKLYSADLPAAQ 519 (1774)
T ss_pred cCC---eEEEEeCCCCEEeccccccc
Confidence 874 58888899999888877644
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.01 E-value=10 Score=33.23 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=91.2
Q ss_pred eeeeEEEeecCCCCcEEEEeecCce------EEEEeCcCCc-ccCCCCCCC--CcccccccccccCCCccEEEEEEccCC
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCH-WYSPISSDT--PVDTFCPRHLIGKNNIHITGLAYSNTS 227 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (439)
-+.+..+.+.|.+ ..+++.+.+|. +..+++.... ......... ++.... ...+.......-+|++.++|
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPD-GQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCC-CCcCCcCCCChhHeEEecCC
Confidence 3457888888755 45556666666 6655555411 000000000 000000 00001112245678888888
Q ss_pred CEEEEec-C------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-----
Q 013644 228 ELLISYN-D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----- 295 (439)
Q Consensus 228 ~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~----- 295 (439)
.++++.. + ..|+.++.. +.......++..-....... .+.......-+++ ++|+|+.|+++.+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~---~~~~~N~G~E~la-~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT---SGRRNNRGFEGLA-VSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc---ccccCCCCeEEEE-ECCCCCEEEEEECccccC
Confidence 8888885 6 788888866 32211111111000000000 2223333478888 8999996665532
Q ss_pred CC--e-------EEE--EecCC-CceeE----eecc-----cccceEEEeecCCCcEEEEEe-----cCCeEEEeccC
Q 013644 296 CG--H-------LFI--WKKKG-GKLVR----LMVG-----DRHVVNQLEPHPHIPMFATCG-----IEKTVKLWAPM 347 (439)
Q Consensus 296 dg--~-------i~i--wd~~~-~~~~~----~~~~-----h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~ 347 (439)
|+ . +++ ||..+ ++... .+.. ....|..+.+-+++++|+-=- ....++|+.+.
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 22 1 444 45544 32222 2221 345788999999998776432 24456666554
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.96 E-value=2.6 Score=32.81 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=26.7
Q ss_pred CceEEEEEccCC-----CcEEEEeCCCCcEEEEEccCC
Q 013644 104 GRVYKLAVEPGS-----PYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 104 ~~v~~i~~~~~~-----~~~l~s~~~dg~i~iwd~~~~ 136 (439)
..|..++|+|.| +.+|++.+.++.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999943 458889999999999986643
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.94 E-value=0.18 Score=48.28 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=47.8
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEe-----------ecCCCcEEEEEecCCeEEEeccC
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE-----------PHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-----------~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
|-++.-++.++-.++.|++.+..+... ..+.+|...++.++ .||||+.+|+++.||.++.|.+.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 345667888888889998877664433 45556766555544 48999999999999999999863
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.92 E-value=17 Score=35.67 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=51.8
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccC----------CCceeeEEeeccCCCCCCCCceeeeEEEeecCCC--Cc
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS----------DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN--PN 171 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 171 (439)
-.|..|.++|+|.+ ++..|..| |.|..+.. ++..............-.......|..+.|+|.+ +.
T Consensus 85 f~v~~i~~n~~g~~-lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSL-LALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCE-EEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 47889999999985 44555544 44444421 1111111111111111112245679999999974 46
Q ss_pred EEEEeecCceEEEEeCcCCc
Q 013644 172 YFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~ 191 (439)
.|++-+.|+.+|+||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888899999999997543
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.85 E-value=12 Score=33.74 Aligned_cols=159 Identities=7% Similarity=-0.027 Sum_probs=0.0
Q ss_pred cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
.+....+..++ ++.+++.+..-..++-|+--....... -......+..+.+.+++. +++++..-+.+.--|-...
T Consensus 238 ~Gsf~~v~~~~--dG~~~~vg~~G~~~~s~d~G~~~W~~~--~~~~~~~l~~v~~~~dg~-l~l~g~~G~l~~S~d~G~~ 312 (398)
T PLN00033 238 TGTFSTVNRSP--DGDYVAVSSRGNFYLTWEPGQPYWQPH--NRASARRIQNMGWRADGG-LWLLTRGGGLYVSKGTGLT 312 (398)
T ss_pred ccceeeEEEcC--CCCEEEEECCccEEEecCCCCcceEEe--cCCCccceeeeeEcCCCC-EEEEeCCceEEEecCCCCc
Q ss_pred CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCc
Q 013644 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI 216 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (439)
.....+....... ....+..+.|.+++ .++.++..|.+....-..... ........-..
T Consensus 313 ~~~~~f~~~~~~~------~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW-------------~~~~~~~~~~~ 371 (398)
T PLN00033 313 EEDFDFEEADIKS------RGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSW-------------KRDKGADNIAA 371 (398)
T ss_pred ccccceeecccCC------CCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcce-------------eEccccCCCCc
Q ss_pred cEEEEEEccCCCEEEEecCCeEEEE
Q 013644 217 HITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 217 ~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
..+.+.|.++++.++++.+|.|..|
T Consensus 372 ~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 372 NLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceeEEEEcCCCceEEEeCCcEEEEe
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.81 E-value=4.7 Score=35.93 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=71.5
Q ss_pred cCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC--cceee-eEEeeCCCCc
Q 013644 212 GKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVK-GVNFFGPNDE 288 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~~~~~s~~~~ 288 (439)
......+..+-..|+|+.|..-+...+.++++.+..-. ..+......+ ...|+ .+. .-..|.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~--------------~rkl~~dspg~~~~~Vte~l~-lL~Gg~ 281 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQ--------------IRKLVDDSPGDSRHQVTEQLY-LLSGGF 281 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccc--------------hhhhhhcCCCchHHHHHHHHH-HHhCce
Confidence 44456678888999999999988889999988765211 0011111011 01122 111 123567
Q ss_pred eEEEeCCCCeEEEE-ecCC-Cc----eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 289 YVMSGSDCGHLFIW-KKKG-GK----LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 289 ~l~~~~~dg~i~iw-d~~~-~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+..++.||-|.-| |... +. .++.++-...++..+.-..+.+-+++-+..|++..+.....+.
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc
Confidence 78888999998877 4332 22 2233332334444444333444677788888888877654443
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.78 E-value=1.3 Score=24.06 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCCCceEEEEEccCCCcEEEEeCCC--CcEEEE
Q 013644 101 KHQGRVYKLAVEPGSPYIIYSCGED--GFVQHF 131 (439)
Q Consensus 101 ~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iw 131 (439)
.....-....|+|||+++++++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999988888777 766665
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=4.4 Score=41.25 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=27.4
Q ss_pred ccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 315 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 315 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
.+..+|..++....-..+.+-+..|+|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567888888877777888888888999998865
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.50 E-value=3.2 Score=32.35 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=26.2
Q ss_pred cceEEEeecCCC------cEEEEEecCCeEEEeccCC
Q 013644 318 HVVNQLEPHPHI------PMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 318 ~~v~~~~~s~~~------~~l~s~~~dg~i~iw~~~~ 348 (439)
..|..++|||.| -+||+...+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 2799999999999999864
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.45 E-value=1.6 Score=24.10 Aligned_cols=31 Identities=6% Similarity=0.129 Sum_probs=23.0
Q ss_pred CCCceEEEeC-CCCeEEEEecCCCceeEeecc
Q 013644 285 PNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 285 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 315 (439)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4667665544 578999999998888777664
No 467
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.40 E-value=11 Score=32.38 Aligned_cols=197 Identities=17% Similarity=0.190 Sum_probs=94.5
Q ss_pred cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC-----cEEEEeecCceEEEEeCcCCcccCCCCCCCC
Q 013644 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-----NYFAVGGSDEYARVYDIRKCHWYSPISSDTP 201 (439)
Q Consensus 127 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 201 (439)
.|.+||+++++.++.+........ ....++.+.+....+ ..+++=...+.|.+||+.+++..........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~-----~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~ 109 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP-----PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFS 109 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCT
T ss_pred EEEEEECCCCcEEEEEECChHHcc-----cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcc
Confidence 678899999988777765432211 244577777766321 2344444456899999998765433222111
Q ss_pred c----ccccccccccCCCccEEEEEEcc---CCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC
Q 013644 202 V----DTFCPRHLIGKNNIHITGLAYSN---TSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272 (439)
Q Consensus 202 ~----~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
. ..+............+..++.+| +++.|.-.. ...++--....-.... ..... ......+.+ +..
T Consensus 110 ~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~---~~~~~-~~~~~v~~l-G~k 184 (287)
T PF03022_consen 110 PDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPS---LSDAQ-ALASQVQDL-GDK 184 (287)
T ss_dssp TS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT-----HHH--HHHT-EEE-EE-
T ss_pred eeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcc---ccccc-cccccceec-ccc
Confidence 0 11110000111123366777765 666676654 3333333322110000 00000 000112222 221
Q ss_pred CcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc---eeEee-cccc--cceEEEeecC--CCcEEEEE
Q 013644 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLM-VGDR--HVVNQLEPHP--HIPMFATC 335 (439)
Q Consensus 273 ~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~~h~--~~v~~~~~s~--~~~~l~s~ 335 (439)
. .....++ ++++|.++++--..+.|..|+..+.- ....+ +... ..+..+.+.+ +|.+.+.+
T Consensus 185 ~-~~s~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 185 G-SQSDGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ---SECEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred C-CCCceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1 1244555 78899999999999999999987521 11122 2222 3567788887 66654444
No 468
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.27 E-value=5.6 Score=28.99 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=61.3
Q ss_pred EEeecCCCcEEEEecCCCcEEEEEcccCceee-----eEEecCCCCceEEEEEcc----CCCcEEEEeCCCCcEEEEEcc
Q 013644 64 RIMPFTDDRKIITSSADGQVRLGQIFEDGRMD-----TKRLGKHQGRVYKLAVEP----GSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 64 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~v~~i~~~~----~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.|.. ....|++++.-|.|.|.+........ ...+-.....|++++--+ ++..+|+.|+ ...|..||+.
T Consensus 5 kfDG--~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG--VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCC--CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4444 55678888888899998875432110 011122446677775443 2233565554 5679999999
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeec---CCCCcEEEEeecCceEEEEeCcCC
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVID---PRNPNYFAVGGSDEYARVYDIRKC 190 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~i~d~~~~ 190 (439)
....+..... ...++++.+- .....++++|+ +..|.-||....
T Consensus 82 ~N~d~Fyke~------------~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~ 127 (136)
T PF14781_consen 82 NNSDLFYKEV------------PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN 127 (136)
T ss_pred cCchhhhhhC------------ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc
Confidence 8765433221 2335555552 11123455444 567777776643
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.11 E-value=5.8 Score=28.92 Aligned_cols=112 Identities=12% Similarity=0.141 Sum_probs=67.6
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCCcc-------eeeeecCCcccEEEEEEeec---CCCcEEEEecCCCcEEEEEc
Q 013644 19 AVEFNSTGDFLVSGSDDKLVIFWDWKDRRE-------KFSYLSGHLDNIFQTRIMPF---TDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-------~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~ 88 (439)
.-.|......|+.++.-|.|.|++...... ..+++ .-...|++++-.+. ...+.|+.|+. .++..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345666666788888889999998764422 11222 34467788876654 24456666655 58999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEcc---CCCcEEEEeCCCCcEEEEEccCC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEP---GSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
..+..+..+. -.+.|+++.+-. ....++ ..+.+..|.-||.+..
T Consensus 81 ~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhhhh---CccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCCc
Confidence 8876654333 346777777632 112244 4444556666665543
No 470
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=8.4 Score=30.54 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCcEEEEeCCCCc--EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 114 GSPYIIYSCGEDGF--VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 114 ~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
++.+++.+.+.-|. |+.||+.+++.+..... ....+..=....-+..+.+..=.+|.-..||.++.+
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l-----------~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKL-----------APDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeec-----------CCccccccceeeccceEEEEEeccceeEEEChHHhh
Q ss_pred ccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeC
Q 013644 192 WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG 270 (439)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (439)
.+ ..+..+-..=....+++-|+.++ ...++.-|.++- .....++.-..
T Consensus 123 ~l------------------g~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tf-------------a~~~~v~VT~~ 171 (262)
T COG3823 123 EL------------------GRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTF-------------AELDTVQVTDD 171 (262)
T ss_pred hh------------------cccccCCcceeeecCCcceEeeCCceEEEecCHHHh-------------hhcceEEEEEC
Q ss_pred CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee------------cccccceEEEeecCCC-cEEEEE
Q 013644 271 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM------------VGDRHVVNQLEPHPHI-PMFATC 335 (439)
Q Consensus 271 ~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~h~~~v~~~~~s~~~-~~l~s~ 335 (439)
...-..++.+.| -+|...|-.-....|...+.++|+.+..+ ..|....+.+++.|++ ++++||
T Consensus 172 g~pv~~LNELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 172 GVPVSKLNELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred Ceecccccceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.09 E-value=3.4 Score=39.31 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.8
Q ss_pred CCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 286 NDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 286 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
+..++++.+.|+++|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6789999999999999999999996654
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.66 E-value=19 Score=32.99 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=37.5
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-e-e---eec-CCcccEEEEEEee
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-F-S---YLS-GHLDNIFQTRIMP 67 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~-~---~~~-~h~~~v~~~~~~~ 67 (439)
.-..-+.|+|.|||++|++--..|.|++++..++... . . ... .-......|+++|
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 3456789999999988877654699999986554321 1 1 111 1356789999998
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.60 E-value=2 Score=23.66 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=23.9
Q ss_pred cCCCcEEEEeCCCCcEEEEEccCCCceeeEE
Q 013644 113 PGSPYIIYSCGEDGFVQHFDLRSDSATRLFY 143 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 143 (439)
|++++++++...++.|.++|..+++....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677777777788999999998877665554
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=12 Score=34.21 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=51.0
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEE---------cccCceeeeEE---------ecCCCCceEEEEEccCC--CcE
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQ---------IFEDGRMDTKR---------LGKHQGRVYKLAVEPGS--PYI 118 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~---------~~~~~~~~~~~---------~~~~~~~v~~i~~~~~~--~~~ 118 (439)
.|..+..++ .|..++-.+.+|.+.++= +++++.....+ .....-.+..++|+|+. ...
T Consensus 105 eV~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 467778888 899999888888766542 12222211111 11122346678999986 334
Q ss_pred EEEeCCCCcEEEEEccCCCce
Q 013644 119 IYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 119 l~s~~~dg~i~iwd~~~~~~~ 139 (439)
|..-+.|..|++||+.....+
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 557778999999999876655
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.81 E-value=2.8 Score=22.75 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=19.0
Q ss_pred cccceEEEeecCCCcEEEEEe-cC--CeEEEe
Q 013644 316 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW 344 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s~~-~d--g~i~iw 344 (439)
....-....|||||+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999999766555 34 555555
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.63 E-value=2.8 Score=39.86 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCcEEEEEccc----CceeeeEEecC--------------------CCCceEEEEEcc---CCCcEEEEe
Q 013644 70 DDRKIITSSADGQVRLGQIFE----DGRMDTKRLGK--------------------HQGRVYKLAVEP---GSPYIIYSC 122 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~--------------------~~~~v~~i~~~~---~~~~~l~s~ 122 (439)
+...++.+..||.+....... +.......+.. ....+..++++. ++..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567788888899888877654 11111111111 123455566665 233477899
Q ss_pred CCCCcEEEEEccCCCceeeEE
Q 013644 123 GEDGFVQHFDLRSDSATRLFY 143 (439)
Q Consensus 123 ~~dg~i~iwd~~~~~~~~~~~ 143 (439)
+.|+++|+||+.+++++....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999866554
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.59 E-value=34 Score=34.54 Aligned_cols=106 Identities=8% Similarity=0.038 Sum_probs=63.6
Q ss_pred EEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEE
Q 013644 221 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 300 (439)
Q Consensus 221 ~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~ 300 (439)
.+..|-..++.++-...+++|++... +..+......-+..|..+.+ .+..++.|...-.+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K----------------~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~ 999 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKK----------------KLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVH 999 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChH----------------HHHhhhhhccCceEEEEEee---cceEEEEeeccceEE
Confidence 45567667888888999999998754 22222222222334777663 667788877655555
Q ss_pred E--EecCCCceeEeeccc--ccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 301 I--WKKKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 301 i--wd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
+ |+-...+ +..+... ...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1000 ~~~y~~~~n~-l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1000 FVRYRREDNQ-LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEecCCCe-EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 4 4444333 3344332 2456666654 34467777777888777654
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.05 E-value=25 Score=32.36 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=37.7
Q ss_pred cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEec-----CCCCceEEEEEccCC
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLG-----KHQGRVYKLAVEPGS 115 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~~ 115 (439)
-..-+.|+|.| ++++|++--..|.|++++..+........+. ........|+++|+-
T Consensus 29 L~~Pw~maflP--DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP--DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC--CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34568899999 9887777655699999876544322111111 125678899999874
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.99 E-value=21 Score=31.44 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=33.6
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-eeeEEe----cCCCCceEEEEEccC
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-MDTKRL----GKHQGRVYKLAVEPG 114 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~----~~~~~~v~~i~~~~~ 114 (439)
.-+.|+|.| ++.++++ ...|.|++++ ..+.. .....+ .........++++|+
T Consensus 3 ~P~~~a~~p--dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLP--DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEET--TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeC--CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 357899999 8877665 5599999998 33332 111122 234467889999994
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.99 E-value=30 Score=33.38 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=46.1
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc--eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE--KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
...++++.-+|.|+.++.+..||+|++|++..... +... ..+-..+.|.. .-|+++..|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~----~~p~~nlv~tn----hgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE----AKPKENLVFTN----HGLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh----cCCccceeeec----cceEEEeccchhheeec
Confidence 45688899999999999999999999999876543 2221 12333455542 33566666777777753
No 481
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.18 E-value=27 Score=35.70 Aligned_cols=143 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred CEEEEe-----cCC----CeEEEEeC-----------CCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 27 DFLVSG-----SDD----KLVIFWDW-----------KDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 27 ~~l~t~-----~~d----g~i~iw~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.|||.| +.| |.+.|+|+ ...+....+.+..+++|..++-. +|.++.+-+ ..|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~G--qKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQG--QKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccC--cEEEEE
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
+++....+.-..+..-.--|.++..-.+ +++.|.--..|.+.-.........+....+. .-.+.++.|-
T Consensus 1122 ~l~r~~~ligVaFiD~~~yv~s~~~vkn---lIl~gDV~ksisfl~fqeep~rlsL~srd~~--------~l~v~s~EFL 1190 (1366)
T KOG1896|consen 1122 KLDRDSELIGVAFIDLPLYVHSMKVVKN---LILAGDVMKSISFLGFQEEPYRLSLLSRDFE--------PLNVYSTEFL 1190 (1366)
T ss_pred EeccCCcceeeEEeccceeEEehhhhhh---heehhhhhhceEEEEEccCceEEEEeecCCc--------hhhceeeeeE
Q ss_pred CCCCc-EEEEeecCceEEEE
Q 013644 167 PRNPN-YFAVGGSDEYARVY 185 (439)
Q Consensus 167 ~~~~~-~l~~~~~dg~i~i~ 185 (439)
-+|.+ .|+++..++.|++|
T Consensus 1191 Vdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1191 VDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred EcCCeeEEEEEcCCCcEEEE
No 482
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.15 E-value=10 Score=37.31 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=25.8
Q ss_pred CccEEEEEEccCCCEEEEec-CCeEEEEEccCC
Q 013644 215 NIHITGLAYSNTSELLISYN-DELVYLFEKNMG 246 (439)
Q Consensus 215 ~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 246 (439)
...-..++.+|+|++.|+.. =++|.+.|+...
T Consensus 321 ~R~ge~lslSP~gtlAAVTD~lgRVlLlDta~~ 353 (1244)
T KOG2727|consen 321 PRKGEKLSLSPSGTLAAVTDSLGRVLLLDTAAL 353 (1244)
T ss_pred ccccceeeeCCCccEEEEecccCcEEEEehhhh
Confidence 34456788999999999886 789999998765
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.31 E-value=30 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=24.4
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
..|.+++..+.. +.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 348899998876 8999999999999999975
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.08 E-value=38 Score=32.67 Aligned_cols=172 Identities=10% Similarity=0.066 Sum_probs=89.8
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecC----CCcEEEEecC-C---CcE
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFT----DDRKIITSSA-D---GQV 83 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~~~-d---g~i 83 (439)
.+.|-++.|.++++.+++.-.+|.|.+||...+. .+......+...+.--.|.+.. ...++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678899999999999999999999999993322 1111111222222111333211 2345554443 2 346
Q ss_pred EEEEc--ccCceeeeEEecCCCCceEEEEEcc-CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 84 RLGQI--FEDGRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 84 ~iw~~--~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
+++.+ .............+........|+- +|. |+-- .+++|.+|++...+....+....+-... ...+
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~--LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~-----~~~~ 280 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK--LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKE-----SDDL 280 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCE--EEEE-eCCEEEEEEcCCceEEEEEEechhhccc-----cccc
Confidence 67777 2222222221111222222222322 343 3222 6789999999888777777655332211 0123
Q ss_pred EEEe-ecCCCCcEEEEeecCceEEEEeCcCCcccCCCC
Q 013644 161 NAIV-IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS 197 (439)
Q Consensus 161 ~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 197 (439)
.++. .+| + +.|++ .+..|++.|+.-...+....
T Consensus 281 vSl~~~s~-n-RvLLs--~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 281 VSLKPPSP-N-RVLLS--VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred eEeecCCC-C-eEEEE--cCCEEEEEeehhhhhhhhhh
Confidence 3332 233 2 45544 34689999998766554443
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=37 Score=35.01 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=39.8
Q ss_pred eeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 277 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+.+..+++++...+ +..-+.+-+|+.........+. +....+++++..++++..||.+..||...+.+
T Consensus 201 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILI--GFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcce--eeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 44444344443333 2233566666654433322222 22222278899999999999999999988654
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.76 E-value=3.9 Score=21.02 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEeCCCCeEEEEecCCCceeEe
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRL 312 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~ 312 (439)
.++.++.+|.+..+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999999887654
No 487
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.73 E-value=31 Score=29.87 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=40.0
Q ss_pred CCCEEEEecCCCeEEEEeCCCC-cceeeeecCCcccEEEEEEeecCCCcEEEEec-CCCcEEEEEcc
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDR-REKFSYLSGHLDNIFQTRIMPFTDDRKIITSS-ADGQVRLGQIF 89 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 89 (439)
++++|+.|..+|... -++... ....+. .+...|+++...+ ..+.|++-+ ....++++++.
T Consensus 12 ~~~~lL~GTe~Gly~-~~~~~~~~~~~kl--~~~~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLYV-LNISDQPGTLEKL--IGRRSVTQIWVLE--ENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceEE-EEcccCCCCeEEe--cCcCceEEEEEEh--hhCEEEEEeCCcceEEEEEHH
Confidence 346899999988544 445442 233333 4567899999998 666666544 34459999984
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.42 E-value=28 Score=28.85 Aligned_cols=144 Identities=11% Similarity=0.071 Sum_probs=68.4
Q ss_pred EEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-C--CcEEEEEccc----CceeeeEEecCCCCceEEEE
Q 013644 38 VIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-D--GQVRLGQIFE----DGRMDTKRLGKHQGRVYKLA 110 (439)
Q Consensus 38 i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d--g~i~iw~~~~----~~~~~~~~~~~~~~~v~~i~ 110 (439)
-.+||+.+.+..... .....-..+-.+.| ||++|.+|+. + ..+++++... .........-.....--+..
T Consensus 48 s~~yD~~tn~~rpl~-v~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT-VQTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEecc-CCCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 457888776432211 12222223334666 9999999876 2 4578887644 11111000011223334556
Q ss_pred EccCCCcEEEEeCCC-CcEEEEEccCC-CceeeEE-eeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeC
Q 013644 111 VEPGSPYIIYSCGED-GFVQHFDLRSD-SATRLFY-CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 187 (439)
Q Consensus 111 ~~~~~~~~l~s~~~d-g~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 187 (439)
..|||+ +|+.|+.. .+..+|.-+.. .....+. ...... .....-..-+...|+| ++|+.+..+. .|||.
T Consensus 125 ~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~----~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~ 196 (243)
T PF07250_consen 125 TLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD----TLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDY 196 (243)
T ss_pred ECCCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhc----cCccccCceEEEcCCC-CEEEEEcCCc--EEEeC
Confidence 678998 45555554 34455544221 1111111 000000 0001112345667876 7887777644 56687
Q ss_pred cCCcc
Q 013644 188 RKCHW 192 (439)
Q Consensus 188 ~~~~~ 192 (439)
.+.+.
T Consensus 197 ~~n~v 201 (243)
T PF07250_consen 197 KTNTV 201 (243)
T ss_pred CCCeE
Confidence 76543
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.25 E-value=74 Score=33.22 Aligned_cols=160 Identities=14% Similarity=0.201 Sum_probs=81.5
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEEEE--------ccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAV--------EPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~--------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
+.|+.+.+|+.+++... ..+.+-...|..+.. -|.=+++|+.++. -.|.++-+.-.+....... +..
T Consensus 96 TiDn~L~lWny~~~~e~--~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~--f~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL--AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSI--FNT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCcc--ccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccc--ccc
Confidence 45789999999886654 335555555655543 3344455544432 3355543332211110000 000
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC--Cc-c----cCCCCCCCCc-cccc--ccccccCCCccEE
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CH-W----YSPISSDTPV-DTFC--PRHLIGKNNIHIT 219 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~-~----~~~~~~~~~~-~~~~--~~~~~~~~~~~i~ 219 (439)
.-..+.....|+++....+| ++|++| .||.| |.+.- .. + ...+...... ..+. ...+...+..+|.
T Consensus 171 ~~~i~~dg~~V~~I~~t~nG-RIF~~G-~dg~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENG-RIFFAG-RDGNL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred ceeeecCCceEEEEEeccCC-cEEEee-cCCCE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 00111135568889866655 666655 45543 33221 10 0 0001000000 0000 1112135577999
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCC
Q 013644 220 GLAYSNTSELLISYN-DELVYLFEKNMG 246 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 246 (439)
.+.+...-.++.+-+ .+.|..|++...
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEccCC
Confidence 999998888888776 899999999873
No 490
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.10 E-value=37 Score=29.69 Aligned_cols=109 Identities=8% Similarity=0.027 Sum_probs=52.8
Q ss_pred CCCEEEEecCC-----CeEEEEeCCCCcce--eeeecCCccc--EEEEEEeecCCCcEEEEecC-----CCcEEEEEccc
Q 013644 25 TGDFLVSGSDD-----KLVIFWDWKDRREK--FSYLSGHLDN--IFQTRIMPFTDDRKIITSSA-----DGQVRLGQIFE 90 (439)
Q Consensus 25 ~~~~l~t~~~d-----g~i~iw~~~~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~-----dg~i~iw~~~~ 90 (439)
++.+++.|+.+ ..+..+|+.+.... ...+..-..+ -.+++.. ++...+.|+. ...+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCC
Confidence 45566667654 24666676554420 1111111111 1222333 6677777764 24577888877
Q ss_pred CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc----EEEEEccCCCc
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF----VQHFDLRSDSA 138 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~----i~iwd~~~~~~ 138 (439)
.+......+... ......+..-++ .+.+.|+.++. +..||+++.+-
T Consensus 149 ~~W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 QEWFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCeeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCee
Confidence 665432222211 111222222344 37777776643 46788877653
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.56 E-value=34 Score=33.06 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=64.7
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS 137 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 137 (439)
..++++.-+| .++.++.+..||+|++++........+. ....+-..+.|...| |++...|..+.-|.-. |.
T Consensus 15 e~~~aiqshp--~~~s~v~~~~d~si~lfn~~~r~qski~---~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~d-gv 85 (1636)
T KOG3616|consen 15 EFTTAIQSHP--GGQSFVLAHQDGSIILFNFIPRRQSKIC---EEAKPKENLVFTNHG---LVTATSDRRALAWKED-GV 85 (1636)
T ss_pred ceeeeeeecC--CCceEEEEecCCcEEEEeecccchhhhh---hhcCCccceeeeccc---eEEEeccchhheeecc-Cc
Confidence 4567778888 9999999999999999998544332111 122344556666555 5577778888888533 32
Q ss_pred ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeC
Q 013644 138 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 187 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 187 (439)
..+.+..... ......++...|.. .-++|+.-|.|.-+|.
T Consensus 86 vqqqfdyndq--------sekefss~~cdpta--qnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 86 VQQQFDYNDQ--------SEKEFSSILCDPTA--QNVVGTLCGGVEQFDC 125 (1636)
T ss_pred chhhccccch--------hhhhccceecCchh--hhhhhhhccceeeehH
Confidence 2222211111 12234556666654 3344555566666663
No 492
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=80.20 E-value=82 Score=33.06 Aligned_cols=381 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeE
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 97 (439)
.+++..|||. |..|.-+-.=||.--..-..+.+.-......-+-++.+| -||++.+=|..+.+.....
T Consensus 368 vala~a~DGS-l~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsP-----------vdgtlyvSdp~s~qv~rv~ 435 (1899)
T KOG4659|consen 368 VALAYAPDGS-LIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSP-----------VDGTLYVSDPLSKQVWRVS 435 (1899)
T ss_pred eeEEEcCCCc-EEEccchheeeecCCCceEEEEEecCCCccceeEEEecC-----------cCceEEecCCCcceEEEec
Q ss_pred EecC---------------------------------CCCceEEEEEccCCCcEEEEeCC------CCcEEEEEccCCCc
Q 013644 98 RLGK---------------------------------HQGRVYKLAVEPGSPYIIYSCGE------DGFVQHFDLRSDSA 138 (439)
Q Consensus 98 ~~~~---------------------------------~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~ 138 (439)
.+.. .-.....|+|+.+|...|+=+.. +|.|.-.=-.++-.
T Consensus 436 sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~ 515 (1899)
T KOG4659|consen 436 SLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQ 515 (1899)
T ss_pred cCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCc
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecC--------CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDP--------RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
.+.+.|......... +-...+.++.+| ++ +.++--+.++.|+|.--+-..+--.-......+.......
T Consensus 516 ~~p~~C~~~~kl~~~--~leWPT~LaV~Pmdnsl~Vld~-nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 516 HPPRTCAQITKLVDL--QLEWPTSLAVDPMDNSLLVLDT-NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred cCccccccccchhhe--eeecccceeecCCCCeEEEeec-ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh
Q ss_pred ccCCCccEEEEEEccCCCEEEE-------------ecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCccee
Q 013644 211 IGKNNIHITGLAYSNTSELLIS-------------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 277 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~l~~-------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (439)
... .+++++++|.+.++ +.||.|.++--............ .+.........-.++-+. +
T Consensus 593 ~~~-----r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~-cdcfs~~~~~At~A~lns--p 664 (1899)
T KOG4659|consen 593 LIQ-----RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAAC-CDCFSLRDVAATQAKLNS--P 664 (1899)
T ss_pred hhh-----hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccC-CccccccchhhhccccCC--c
Q ss_pred eeEEeeCCCCceEEEeCCCCeEEEEecCC---------------CceeEeecccccceEEEeecCCCc-EEEEE---ecC
Q 013644 278 KGVNFFGPNDEYVMSGSDCGHLFIWKKKG---------------GKLVRLMVGDRHVVNQLEPHPHIP-MFATC---GIE 338 (439)
Q Consensus 278 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~---------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~---~~d 338 (439)
.+++ .+|+|..+++-..+-.|+--..+. .+.+..|..|......+..-.-.. +-+|- +.+
T Consensus 665 ~ala-VsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~ 743 (1899)
T KOG4659|consen 665 YALA-VSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSI 743 (1899)
T ss_pred ceEE-ECCCCcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCc
Q ss_pred CeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceeeeecccccccccCCccccceEEEe
Q 013644 339 KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLL 418 (439)
Q Consensus 339 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (439)
|.+.--.-..+....+....................+..+.||.+....-+......+.-..+.+.-....++.+..+..
T Consensus 744 ~~lsei~~a~Gn~l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~vSt~d~~~~~~ty~g~tglL~Tk~d~tg~~~~y 823 (1899)
T KOG4659|consen 744 GMLSEITDASGNVLRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQVSTRDATSRDATYLGYTGLLLTKRDDTGTAVVY 823 (1899)
T ss_pred chhhhhhhcCCcEEEEEecCCCCcceeecCCCcEEEEEEecCCceeEeccCCCccceeeeeccccceeeeecccceEEEE
Q ss_pred eeCC
Q 013644 419 GFSD 422 (439)
Q Consensus 419 ~~~~ 422 (439)
+.+.
T Consensus 824 eYDe 827 (1899)
T KOG4659|consen 824 EYDE 827 (1899)
T ss_pred cccc
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=79.97 E-value=30 Score=33.91 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=87.5
Q ss_pred CcEEEEecCCCcEEEEEcccCce--eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC
Q 013644 71 DRKIITSSADGQVRLGQIFEDGR--MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148 (439)
Q Consensus 71 ~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 148 (439)
...+..|+.++.+.++.-..+.. ............+.++.+++.. +..|.-||++-.|--.-... ... .
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S---lgagl~dgt~a~y~rap~gS---wd~---e 617 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS---LGAGLIDGTLAVYGRAPSGS---WDG---E 617 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc---cccCccCCccccccCCCCCC---CCC---C
Confidence 34677888889998887652221 1111223344567777777653 44666677665542211100 000 0
Q ss_pred CCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 013644 149 ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 228 (439)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (439)
+....+....++.+.++..+ ++.|+.+|.+.++...+...... ......+...|+.+.+..++-
T Consensus 618 p~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~------------leahqee~~~Vthm~~~~~gV 681 (925)
T KOG3522|consen 618 PNISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWD------------LEAHQEEAHSVTHMLYLDNGV 681 (925)
T ss_pred CccccccCCccccchhhhhc----eeeeecCCceEEEechhccccch------------hHHHHhhcceEEEEEeeCCce
Confidence 00000113445777777643 56677889999998876432111 111144567899999999998
Q ss_pred EEEEecCCeEEEEEccCC
Q 013644 229 LLISYNDELVYLFEKNMG 246 (439)
Q Consensus 229 ~l~~~~d~~i~i~d~~~~ 246 (439)
+++..+...+++++..+-
T Consensus 682 wvafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 682 WVAFASGDEERLFHTETL 699 (925)
T ss_pred EEEEcCCCEEEEeccccc
Confidence 888888888888866553
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.72 E-value=36 Score=29.00 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCEEEEec-CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec------CCCcEEEEEcccCceeeeEE
Q 013644 26 GDFLVSGS-DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS------ADGQVRLGQIFEDGRMDTKR 98 (439)
Q Consensus 26 ~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~~~~~~~ 98 (439)
|.+=..|+ ....|++||..+.+-..-- .+-.+.|+++.|.. +.++++.|. ....+..||+.+........
T Consensus 5 G~F~~aGsL~C~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~--~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 5 GSFTSAGSLPCPGLCLYDTDNSQWSSPG-NGISGTVTDLQWAS--NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred eecCCCCCcCCCEEEEEECCCCEeecCC-CCceEEEEEEEEec--CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Q ss_pred -e-cCCCCceEEEEEccCCCcEEEEeCC----CCcEEEEE
Q 013644 99 -L-GKHQGRVYKLAVEPGSPYIIYSCGE----DGFVQHFD 132 (439)
Q Consensus 99 -~-~~~~~~v~~i~~~~~~~~~l~s~~~----dg~i~iwd 132 (439)
. ..-.++|..+.+......-+..++. +..|..||
T Consensus 82 ~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 82 GSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred cccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
No 495
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.26 E-value=58 Score=30.78 Aligned_cols=259 Identities=13% Similarity=0.161 Sum_probs=117.8
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCCcc--eeeeecCC-cccEEEEEEeecCCC-cEEEEecCCCcEEEEEcccCceeeeEE
Q 013644 23 NSTGDFLVSGSDDKLVIFWDWKDRRE--KFSYLSGH-LDNIFQTRIMPFTDD-RKIITSSADGQVRLGQIFEDGRMDTKR 98 (439)
Q Consensus 23 s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~h-~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~ 98 (439)
..++..++-+..+|.+..-.+..... ....+ +. .....++.+.. ++ .+|+.|+.-|.=.++.+..........
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~--~g~d~lf~gs~~gds~l~~~~~~~l~~~~~ 295 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLK--NGGDYLFVGSEFGDSQLLQISLSNLEVLDS 295 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEES--TT--EEEEEESSS-EEEEEEESESEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEc--CCCEEEEEEEecCCcEEEEEeCCCcEEEEe
Confidence 44677788888999988887765431 12221 22 44566777774 32 378888775544444444333332233
Q ss_pred ecCCCCceEEEEEccC---CC-------cEEEEeC--CCCcEEEEEccCCCcee--eEEeeccCCCCCCCCceeeeEEEe
Q 013644 99 LGKHQGRVYKLAVEPG---SP-------YIIYSCG--EDGFVQHFDLRSDSATR--LFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~---~~-------~~l~s~~--~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+. .-++|..+++.+. +. .+++++| .+|.+++.. .|-... ........ .-..+..+.
T Consensus 296 ~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~-------~v~~iW~l~ 365 (504)
T PF10433_consen 296 LP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELP-------GVTGIWTLK 365 (504)
T ss_dssp E-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEES-------TEEEEEEE-
T ss_pred cc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCC-------CceEEEEee
Confidence 33 4478888888532 11 3555544 467787763 333333 22222222 133456666
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcC---CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRK---CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
....+..+++.+..+. -+++.+.. .+.+. .. ...-+......+.+-.+. +..++=-....|++.
T Consensus 366 ~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~---------e~-~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~ 432 (504)
T PF10433_consen 366 LSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVE---------EV-EEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLI 432 (504)
T ss_dssp SSSSSBSEEEEEESSE-EEEEEES----SSEEE---------EE----TS-SSS-EEEEEEET--TTEEEEEESSEEEEE
T ss_pred ecCCCceEEEEEcCCc-eEEEEEecccCCcchh---------hh-hhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEE
Confidence 5442235666665543 44555531 11100 00 000001111222222222 444444445567777
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec-c----c
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-G----D 316 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~----h 316 (439)
+.... +........ ....|.+.+. ++.+++.+..++.+..+.+.......... . .
T Consensus 433 ~~~~~----------------~~~~~w~~~-~~~~I~~a~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (504)
T PF10433_consen 433 DLEDG----------------KLTQEWKPP-AGSIIVAASI---NDPQVLVALSGGELVYFELDDNKISVSDNDETILEL 492 (504)
T ss_dssp ESSST----------------SEEEEEE-T-TS---SEEEE---SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-
T ss_pred ECCCC----------------eEEEEEeCC-CCCeEEEEEE---CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccC
Confidence 75443 122222211 2223555542 44666666667889999887665543222 1 3
Q ss_pred ccceEEEeecC
Q 013644 317 RHVVNQLEPHP 327 (439)
Q Consensus 317 ~~~v~~~~~s~ 327 (439)
...|.|+...|
T Consensus 493 ~~eis~l~i~p 503 (504)
T PF10433_consen 493 DNEISCLSIEP 503 (504)
T ss_dssp SS-EEEEE---
T ss_pred CCceEEEEeCC
Confidence 46788888766
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=78.86 E-value=43 Score=29.03 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=38.2
Q ss_pred EEEEeCCCCcEEEEEccC--CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 118 IIYSCGEDGFVQHFDLRS--DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 118 ~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
.++.|+++|. .+.++.. .+..+.+ +...|.++...+...-+++.++....++.+++....
T Consensus 15 ~lL~GTe~Gl-y~~~~~~~~~~~~kl~-------------~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~ 76 (302)
T smart00036 15 WLLVGTEEGL-YVLNISDQPGTLEKLI-------------GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALV 76 (302)
T ss_pred EEEEEeCCce-EEEEcccCCCCeEEec-------------CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence 4668888884 4455554 2333333 345688998888764555556566669999996544
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.33 E-value=38 Score=28.12 Aligned_cols=154 Identities=10% Similarity=0.023 Sum_probs=73.8
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC---ceEEEEeCcCCcccCCCCCCCCccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
-.+||+.+++....... ...-+.+-.+.++| +++.+|+.. ..+++++........ .-
T Consensus 48 s~~yD~~tn~~rpl~v~-----------td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~--------~w 107 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ-----------TDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTC--------DW 107 (243)
T ss_pred EEEEecCCCcEEeccCC-----------CCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCC--------Cc
Confidence 45788887764332111 12224445677876 788888752 347777754411000 00
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEecCC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYNDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 282 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 282 (439)
...... -....+-.++...|||+.|+.|+.. ....|...... ........+......... ...-..|
T Consensus 108 ~e~~~~-m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~---------~~~~~~~~l~~~~~~~~~-nlYP~~~ 176 (243)
T PF07250_consen 108 TESPND-MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG---------PGPVTLPFLSQTSDTLPN-NLYPFVH 176 (243)
T ss_pred eECccc-ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC---------CCceeeecchhhhccCcc-ccCceEE
Confidence 000000 1223445566677899998888632 23333221110 000000001101001110 1222233
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
.-|+|++++.+..+. .|||..+.+.++.+.
T Consensus 177 llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 177 LLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred EcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 679999999988754 466887776666654
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.23 E-value=42 Score=32.99 Aligned_cols=141 Identities=9% Similarity=-0.007 Sum_probs=80.8
Q ss_pred EEEEecCCCeEEEEeCCCCcc---eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE--------EEcccCceeee
Q 013644 28 FLVSGSDDKLVIFWDWKDRRE---KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL--------GQIFEDGRMDT 96 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i--------w~~~~~~~~~~ 96 (439)
.+..|+.++.|.++.-..+.. ...........+.++.+++ .-+..|.-||++-. ||.+- .
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss----~Slgagl~dgt~a~y~rap~gSwd~ep-----~ 619 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS----GSLGAGLIDGTLAVYGRAPSGSWDGEP-----N 619 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc----cccccCccCCccccccCCCCCCCCCCC-----c
Confidence 466788899999998662221 1122223345666777764 23333444444443 54431 1
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
..+..-..+|.+.++..+ ++.++.+|.|.++...+.........+.. +...|+++.+...+ -+++.+
T Consensus 620 ~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahqe--------e~~~Vthm~~~~~g-Vwvafa 686 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQE--------EAHSVTHMLYLDNG-VWVAFA 686 (925)
T ss_pred cccccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHHh--------hcceEEEEEeeCCc-eEEEEc
Confidence 223334568888888776 34678899999999887655444432221 45678999888654 333333
Q ss_pred ecCceEEEEeCcCCc
Q 013644 177 GSDEYARVYDIRKCH 191 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~ 191 (439)
....++.++..+..
T Consensus 687 -sG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 687 -SGDEERLFHTETLW 700 (925)
T ss_pred -CCCEEEEecccccC
Confidence 33356666655544
No 499
>PLN02153 epithiospecifier protein
Probab=78.20 E-value=48 Score=29.29 Aligned_cols=241 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred EEEEeecCCCcEEEEecCCC-------cEEEEEcccCceeeeEEec-CCCCceEEEEEccCCCcEEEEeCCC-----CcE
Q 013644 62 QTRIMPFTDDRKIITSSADG-------QVRLGQIFEDGRMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCGED-----GFV 128 (439)
Q Consensus 62 ~~~~~~~~~~~~l~s~~~dg-------~i~iw~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i 128 (439)
+++.. ++.+++.|+.+. .+.+||+.+.+........ .........+...-+..+++.|+.+ ..+
T Consensus 27 ~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v 103 (341)
T PLN02153 27 GIAVV---GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDF 103 (341)
T ss_pred eEEEE---CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcE
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-----------ceEEEEeCcCCcccCCCC
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-----------EYARVYDIRKCHWYSPIS 197 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~ 197 (439)
.+||+.+.+-...-.............|...+. ++.+++.|+.+ ..+.+||..+.+..
T Consensus 104 ~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~---- 172 (341)
T PLN02153 104 YSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-------ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV---- 172 (341)
T ss_pred EEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-------CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe----
Q ss_pred CCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C-------------CeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 198 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-------------ELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d-------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
...................-++++++.++ + ..+.+||+.+. +
T Consensus 173 --------~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~----------------~ 228 (341)
T PLN02153 173 --------QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG----------------K 228 (341)
T ss_pred --------eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCC----------------c
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCC--------------CeEEEEecCCCceeEeecccccc-------eEE
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC--------------GHLFIWKKKGGKLVRLMVGDRHV-------VNQ 322 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~h~~~-------v~~ 322 (439)
....-.....+...........++++++.|+.. +.+..||..+.+-...-.....+ ..+
T Consensus 229 W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~ 308 (341)
T PLN02153 229 WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTT 308 (341)
T ss_pred EEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccc
Q ss_pred EeecCCCcEEEEEecCCe
Q 013644 323 LEPHPHIPMFATCGIEKT 340 (439)
Q Consensus 323 ~~~s~~~~~l~s~~~dg~ 340 (439)
+...-++++++.|+.++.
T Consensus 309 ~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 309 ATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cccCCcceEEEEcCcCCC
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.95 E-value=61 Score=30.33 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=56.1
Q ss_pred EEECCCCCEEEEecCCCeEEEEeCCCCcceeee-ecCCc-ccEEEEEEeecCCCcEEEEecC-------------CCcEE
Q 013644 20 VEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY-LSGHL-DNIFQTRIMPFTDDRKIITSSA-------------DGQVR 84 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~h~-~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~ 84 (439)
+...++|.+++..+ ..++.+|+... .+... +.... ..=..+...| +|++|+.+.. .-.|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D~Iv 227 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELP--NGNLLILASETKYVDEDKDVDTVEDVIV 227 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECC--CCCEEEEEeecccccCCCCccEecCEEE
Confidence 56678888777655 67787777543 22211 11100 1113355566 8888776661 11233
Q ss_pred EEEcccCceeeeEEecCCC-------------------------CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce
Q 013644 85 LGQIFEDGRMDTKRLGKHQ-------------------------GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~-------------------------~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 139 (439)
.+| .+++.+....+..|- -.++++.+.+....+++++-.-..|...|.++++..
T Consensus 228 evd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 228 EVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp EE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred EEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 333 333332221111110 247899999955567878777778888898887765
Q ss_pred eeEE
Q 013644 140 RLFY 143 (439)
Q Consensus 140 ~~~~ 143 (439)
..+-
T Consensus 307 Wilg 310 (477)
T PF05935_consen 307 WILG 310 (477)
T ss_dssp EEES
T ss_pred EEeC
Confidence 5553
Done!