Query 013644
Match_columns 439
No_of_seqs 801 out of 2324
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 14:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.4E-50 4.7E-55 363.9 38.5 288 7-346 101-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 4.7E-50 1.6E-54 351.7 40.2 293 4-345 45-340 (340)
3 1nr0_A Actin interacting prote 100.0 3.5E-50 1.2E-54 379.7 41.2 373 4-392 49-569 (611)
4 3ow8_A WD repeat-containing pr 100.0 5.4E-50 1.9E-54 347.6 36.9 290 6-346 24-319 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 1.9E-49 6.6E-54 342.2 39.9 295 3-348 2-302 (304)
6 3iz6_a 40S ribosomal protein R 100.0 1.2E-50 4.2E-55 360.8 31.6 308 3-350 55-377 (380)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.8E-49 2E-53 345.3 38.9 320 3-351 4-338 (345)
8 2pbi_B Guanine nucleotide-bind 100.0 6.8E-49 2.3E-53 345.8 39.3 295 4-345 54-354 (354)
9 1nr0_A Actin interacting prote 100.0 4.2E-49 1.4E-53 372.4 38.8 352 3-389 179-610 (611)
10 4ery_A WD repeat-containing pr 100.0 3.7E-48 1.3E-52 336.1 40.4 296 4-347 13-311 (312)
11 4g56_B MGC81050 protein; prote 100.0 1.8E-48 6.3E-53 343.2 34.4 292 10-349 38-344 (357)
12 4gqb_B Methylosome protein 50; 100.0 2.5E-48 8.5E-53 339.4 34.6 292 11-351 27-334 (344)
13 2ymu_A WD-40 repeat protein; u 100.0 2.4E-47 8.1E-52 359.8 39.5 325 4-387 252-577 (577)
14 3frx_A Guanine nucleotide-bind 100.0 4.4E-47 1.5E-51 329.6 36.5 294 3-349 6-318 (319)
15 2xzm_R RACK1; ribosome, transl 100.0 9.7E-47 3.3E-51 331.2 36.4 297 3-349 10-341 (343)
16 3ow8_A WD repeat-containing pr 100.0 1.1E-46 3.6E-51 327.0 32.9 290 52-389 27-320 (321)
17 1erj_A Transcriptional repress 100.0 5.9E-46 2E-50 332.2 38.1 304 12-349 62-390 (393)
18 2hes_X YDR267CP; beta-propelle 100.0 4.2E-46 1.4E-50 325.1 36.2 309 1-348 1-328 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 9.2E-46 3.1E-50 348.9 40.8 328 4-390 211-539 (577)
20 1vyh_C Platelet-activating fac 100.0 3.6E-46 1.2E-50 335.2 32.5 285 52-388 103-409 (410)
21 2ynn_A Coatomer subunit beta'; 100.0 1.4E-45 4.8E-50 318.0 33.6 291 50-391 6-303 (304)
22 4aow_A Guanine nucleotide-bind 100.0 1.3E-44 4.4E-49 318.1 37.9 298 2-350 26-339 (340)
23 2pm9_A Protein WEB1, protein t 100.0 2.3E-46 8E-51 338.6 26.9 340 13-391 11-415 (416)
24 1r5m_A SIR4-interacting protei 100.0 2.8E-45 9.5E-50 332.5 33.0 334 11-389 42-424 (425)
25 4g56_B MGC81050 protein; prote 100.0 1.3E-45 4.4E-50 325.1 27.1 325 18-392 9-345 (357)
26 4gqb_B Methylosome protein 50; 100.0 4.1E-45 1.4E-49 319.1 29.0 305 38-392 16-333 (344)
27 3zwl_B Eukaryotic translation 100.0 2.4E-43 8.4E-48 313.6 39.5 304 6-351 24-349 (369)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-44 2.3E-48 313.1 35.0 303 50-394 8-339 (345)
29 4e54_B DNA damage-binding prot 100.0 2.6E-44 9.1E-49 326.1 33.0 305 3-351 108-433 (435)
30 3ei3_B DNA damage-binding prot 100.0 1.9E-43 6.5E-48 315.7 37.6 300 3-348 62-382 (383)
31 1sq9_A Antiviral protein SKI8; 100.0 1.5E-43 5.2E-48 318.1 36.4 301 4-349 6-396 (397)
32 1got_B GT-beta; complex (GTP-b 100.0 1.5E-43 5E-48 310.5 34.1 289 50-387 48-340 (340)
33 1gxr_A ESG1, transducin-like e 100.0 1.5E-42 5E-47 304.6 38.8 285 9-346 46-335 (337)
34 4a11_B DNA excision repair pro 100.0 5.9E-43 2E-47 315.5 37.1 353 5-391 34-406 (408)
35 3iz6_a 40S ribosomal protein R 100.0 2.2E-44 7.7E-49 320.5 26.6 317 37-392 47-377 (380)
36 3dm0_A Maltose-binding peripla 100.0 3.6E-43 1.2E-47 337.3 36.8 295 4-347 372-692 (694)
37 1gxr_A ESG1, transducin-like e 100.0 3.2E-43 1.1E-47 308.8 33.3 324 13-388 8-335 (337)
38 3sfz_A APAF-1, apoptotic pepti 100.0 4.6E-43 1.6E-47 358.4 39.1 302 8-347 609-912 (1249)
39 1k8k_C P40, ARP2/3 complex 41 100.0 2.9E-42 9.9E-47 307.0 38.3 309 9-349 3-362 (372)
40 3i2n_A WD repeat-containing pr 100.0 4.6E-43 1.6E-47 310.4 32.5 296 7-350 11-355 (357)
41 2pm9_A Protein WEB1, protein t 100.0 6.6E-44 2.3E-48 322.6 27.0 298 12-349 65-415 (416)
42 1pgu_A Actin interacting prote 100.0 6.3E-43 2.1E-47 332.3 34.8 349 5-390 54-614 (615)
43 3odt_A Protein DOA1; ubiquitin 100.0 3.2E-42 1.1E-46 299.2 36.1 292 3-351 7-299 (313)
44 3frx_A Guanine nucleotide-bind 100.0 5.6E-42 1.9E-46 297.5 35.6 289 50-391 10-318 (319)
45 2oaj_A Protein SNI1; WD40 repe 100.0 4.2E-42 1.4E-46 335.8 38.7 370 4-395 89-669 (902)
46 2pbi_B Guanine nucleotide-bind 100.0 3.1E-42 1.1E-46 303.3 34.2 286 50-387 57-354 (354)
47 3mkq_A Coatomer beta'-subunit; 100.0 4.7E-42 1.6E-46 336.6 38.7 296 3-348 2-302 (814)
48 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-42 1.5E-46 351.1 39.5 370 3-395 646-1079(1249)
49 3gre_A Serine/threonine-protei 100.0 1.2E-42 4E-47 316.2 30.4 313 4-345 52-437 (437)
50 4h5i_A Guanine nucleotide-exch 100.0 1.9E-42 6.5E-47 305.7 30.8 289 14-348 14-343 (365)
51 1erj_A Transcriptional repress 100.0 1.5E-42 5.2E-47 310.1 30.4 332 5-391 6-390 (393)
52 2hes_X YDR267CP; beta-propelle 100.0 5E-42 1.7E-46 299.3 32.7 295 50-390 7-328 (330)
53 3k26_A Polycomb protein EED; W 100.0 4.3E-42 1.5E-46 305.2 32.6 323 4-347 7-365 (366)
54 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-42 1.3E-46 335.9 34.0 369 12-394 56-609 (902)
55 4ery_A WD repeat-containing pr 100.0 1.7E-41 5.7E-46 294.3 33.8 290 49-389 15-311 (312)
56 2xzm_R RACK1; ribosome, transl 100.0 3.7E-41 1.3E-45 295.7 36.4 293 50-392 14-342 (343)
57 3dwl_C Actin-related protein 2 100.0 9.6E-43 3.3E-47 310.6 25.4 308 8-346 5-377 (377)
58 2pm7_B Protein transport prote 100.0 2.4E-41 8.2E-46 290.6 33.1 271 7-347 2-284 (297)
59 3vl1_A 26S proteasome regulato 100.0 5.4E-42 1.8E-46 310.4 30.4 335 16-390 58-419 (420)
60 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-42 5.4E-47 317.4 25.8 328 13-391 132-518 (524)
61 1r5m_A SIR4-interacting protei 100.0 5E-41 1.7E-45 304.5 35.4 280 13-347 107-424 (425)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-40 4.7E-45 303.1 37.2 321 4-391 108-443 (445)
63 3v7d_B Cell division control p 100.0 3.6E-40 1.2E-44 302.2 38.2 331 6-388 113-461 (464)
64 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-40 4.1E-45 296.6 30.8 314 53-394 4-365 (372)
65 4gga_A P55CDC, cell division c 100.0 2.6E-39 8.8E-44 292.1 39.6 283 17-351 108-398 (420)
66 1yfq_A Cell cycle arrest prote 100.0 3.8E-40 1.3E-44 289.9 33.1 294 5-346 2-322 (342)
67 3dw8_B Serine/threonine-protei 100.0 6.9E-40 2.4E-44 299.1 35.6 304 13-346 27-444 (447)
68 3mmy_A MRNA export factor; mRN 100.0 5E-40 1.7E-44 292.1 32.7 297 3-347 28-345 (368)
69 4aez_A CDC20, WD repeat-contai 100.0 1E-39 3.5E-44 293.0 34.8 285 11-351 88-383 (401)
70 3vl1_A 26S proteasome regulato 100.0 1.7E-39 5.8E-44 294.0 36.0 301 8-348 92-419 (420)
71 3bg1_A Protein SEC13 homolog; 100.0 5.1E-41 1.7E-45 291.1 24.6 274 8-347 7-292 (316)
72 4aow_A Guanine nucleotide-bind 100.0 2.9E-39 9.9E-44 284.0 36.2 311 31-392 9-339 (340)
73 4ggc_A P55CDC, cell division c 100.0 8.7E-39 3E-43 278.2 38.4 282 17-349 28-316 (318)
74 1pgu_A Actin interacting prote 100.0 2.4E-40 8.2E-45 314.5 30.3 300 12-363 16-344 (615)
75 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-39 7.2E-44 285.9 32.6 311 7-350 4-339 (351)
76 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-40 1.1E-44 302.2 26.7 292 8-349 201-518 (524)
77 4e54_B DNA damage-binding prot 100.0 5.7E-40 1.9E-44 297.7 27.3 298 53-394 115-434 (435)
78 3zwl_B Eukaryotic translation 100.0 1.3E-38 4.4E-43 283.1 34.8 301 52-394 27-350 (369)
79 1sq9_A Antiviral protein SKI8; 100.0 2.5E-39 8.5E-44 290.7 29.1 297 50-391 9-396 (397)
80 3ei3_B DNA damage-binding prot 100.0 5.9E-39 2E-43 286.6 29.6 294 50-390 66-382 (383)
81 3dm0_A Maltose-binding peripla 100.0 9.7E-39 3.3E-43 306.6 33.1 293 51-390 376-693 (694)
82 3i2n_A WD repeat-containing pr 100.0 1.1E-38 3.9E-43 282.2 29.7 300 46-392 7-355 (357)
83 3dwl_C Actin-related protein 2 100.0 7E-40 2.4E-44 292.1 22.1 262 54-347 8-280 (377)
84 3gre_A Serine/threonine-protei 100.0 8.2E-40 2.8E-44 297.5 22.3 322 21-387 34-437 (437)
85 1p22_A F-BOX/WD-repeat protein 100.0 4.3E-38 1.5E-42 285.6 33.0 279 10-351 129-417 (435)
86 3jrp_A Fusion protein of prote 100.0 3.8E-38 1.3E-42 281.2 31.0 263 5-348 2-287 (379)
87 3k26_A Polycomb protein EED; W 100.0 1.2E-38 4.2E-43 282.9 26.2 311 51-390 12-366 (366)
88 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-37 5.6E-42 304.5 36.2 340 3-395 44-465 (814)
89 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-37 5.9E-42 269.4 31.9 294 42-394 3-300 (313)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.4E-37 1.9E-41 279.4 36.3 285 3-349 148-443 (445)
91 3v7d_B Cell division control p 100.0 8.3E-37 2.8E-41 279.9 37.2 288 2-345 150-460 (464)
92 2pm7_B Protein transport prote 100.0 4.6E-37 1.6E-41 263.9 30.8 266 52-390 4-285 (297)
93 4h5i_A Guanine nucleotide-exch 100.0 3.8E-37 1.3E-41 271.8 28.2 292 57-391 14-344 (365)
94 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-37 6E-42 278.8 26.4 290 16-350 36-344 (402)
95 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-37 4.5E-42 277.4 23.8 277 12-347 13-296 (588)
96 4aez_A CDC20, WD repeat-contai 100.0 1.9E-36 6.4E-41 271.8 28.7 288 55-395 89-385 (401)
97 4gga_A P55CDC, cell division c 100.0 9.6E-36 3.3E-40 268.8 32.8 285 60-394 108-399 (420)
98 4a11_B DNA excision repair pro 100.0 1.1E-36 3.7E-41 274.5 26.5 328 35-395 22-370 (408)
99 2xyi_A Probable histone-bindin 100.0 5.6E-36 1.9E-40 270.9 30.7 254 8-349 122-411 (430)
100 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-35 4.9E-40 261.0 32.2 297 4-349 9-337 (355)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-35 6.1E-40 269.5 33.5 286 14-348 4-391 (450)
102 3jro_A Fusion protein of prote 100.0 1.5E-36 5E-41 292.9 27.5 265 7-308 2-287 (753)
103 3bg1_A Protein SEC13 homolog; 100.0 5.2E-37 1.8E-41 265.9 21.3 273 50-390 6-293 (316)
104 1p22_A F-BOX/WD-repeat protein 100.0 7.3E-36 2.5E-40 270.9 29.8 278 54-394 130-418 (435)
105 1yfq_A Cell cycle arrest prote 100.0 1.2E-35 4.2E-40 261.1 28.4 280 52-382 6-315 (342)
106 3dw8_B Serine/threonine-protei 100.0 2.8E-36 9.5E-41 275.2 25.1 271 55-351 26-376 (447)
107 3lrv_A PRE-mRNA-splicing facto 100.0 9.9E-36 3.4E-40 261.3 24.3 275 21-348 43-333 (343)
108 3bws_A Protein LP49; two-domai 100.0 5.6E-34 1.9E-38 258.8 36.0 289 5-348 114-432 (433)
109 4ggc_A P55CDC, cell division c 100.0 2.4E-34 8.1E-39 250.2 31.8 282 60-391 28-316 (318)
110 3vu4_A KMHSV2; beta-propeller 100.0 5.4E-34 1.8E-38 250.9 34.0 305 40-392 3-338 (355)
111 4gq1_A NUP37; propeller, trans 100.0 2.3E-35 7.8E-40 263.4 24.8 262 70-347 100-388 (393)
112 3mmy_A MRNA export factor; mRN 100.0 5.1E-35 1.8E-39 259.8 26.4 287 50-387 32-343 (368)
113 1l0q_A Surface layer protein; 100.0 1.5E-33 5E-38 252.5 35.2 312 27-394 3-346 (391)
114 3jro_A Fusion protein of prote 100.0 8.1E-35 2.8E-39 280.8 27.1 258 51-348 3-285 (753)
115 3jrp_A Fusion protein of prote 100.0 5.3E-34 1.8E-38 254.3 29.2 271 51-394 5-291 (379)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-34 8.2E-39 258.3 26.8 257 6-309 73-345 (402)
117 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-34 8.3E-39 256.5 25.7 268 7-337 45-350 (588)
118 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-34 9.1E-39 253.2 24.7 311 50-395 4-342 (351)
119 2xyi_A Probable histone-bindin 100.0 7.9E-34 2.7E-38 256.9 28.2 298 15-391 46-411 (430)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-32 6E-37 249.8 31.3 287 58-391 5-392 (450)
121 1l0q_A Surface layer protein; 100.0 3.9E-31 1.3E-35 236.8 39.0 293 3-351 21-345 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 4.6E-33 1.6E-37 244.3 25.4 265 70-391 47-334 (343)
123 3bws_A Protein LP49; two-domai 100.0 1.2E-31 4.1E-36 243.5 33.7 324 13-390 59-432 (433)
124 1nir_A Nitrite reductase; hemo 100.0 7.2E-32 2.5E-36 249.0 32.5 336 21-395 144-519 (543)
125 2w18_A PALB2, fancn, partner a 100.0 1.2E-30 4.1E-35 218.6 31.3 292 4-346 25-355 (356)
126 4gq1_A NUP37; propeller, trans 100.0 2.5E-31 8.6E-36 237.3 22.5 270 14-305 89-388 (393)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.7E-30 5.8E-35 233.1 25.2 295 14-362 62-401 (415)
128 1nir_A Nitrite reductase; hemo 100.0 6.4E-28 2.2E-32 222.7 35.5 312 3-351 168-517 (543)
129 2w18_A PALB2, fancn, partner a 100.0 1.7E-28 5.7E-33 205.7 25.9 281 59-388 41-355 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.5E-28 2.6E-32 215.9 28.0 265 8-330 111-410 (415)
131 1k32_A Tricorn protease; prote 100.0 1.4E-27 4.8E-32 238.9 32.3 343 7-396 45-467 (1045)
132 2ecf_A Dipeptidyl peptidase IV 100.0 1.8E-27 6E-32 230.8 29.4 293 14-347 36-412 (741)
133 1ri6_A Putative isomerase YBHE 100.0 3.2E-26 1.1E-30 201.0 28.7 283 28-347 7-307 (343)
134 1xfd_A DIP, dipeptidyl aminope 100.0 7.8E-27 2.7E-31 225.7 25.2 299 15-348 17-393 (723)
135 3u4y_A Uncharacterized protein 100.0 2.5E-25 8.4E-30 194.3 32.0 286 20-351 3-307 (331)
136 2z3z_A Dipeptidyl aminopeptida 100.0 7.1E-26 2.4E-30 218.2 28.4 330 16-392 27-437 (706)
137 1k32_A Tricorn protease; prote 99.9 6.2E-25 2.1E-29 219.8 35.1 281 7-347 196-501 (1045)
138 3vgz_A Uncharacterized protein 99.9 2.2E-24 7.6E-29 190.1 32.0 278 13-339 39-335 (353)
139 2ojh_A Uncharacterized protein 99.9 2.9E-25 1E-29 190.6 25.0 256 31-339 17-293 (297)
140 3hfq_A Uncharacterized protein 99.9 4.2E-24 1.4E-28 187.8 32.5 289 34-351 14-322 (347)
141 1pby_B Quinohemoprotein amine 99.9 7.3E-25 2.5E-29 191.8 25.2 269 27-351 2-313 (337)
142 3o4h_A Acylamino-acid-releasin 99.9 9.4E-25 3.2E-29 205.5 25.5 273 13-348 20-315 (582)
143 2ecf_A Dipeptidyl peptidase IV 99.9 3.4E-24 1.2E-28 207.7 29.8 283 16-351 110-462 (741)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-24 5.1E-29 209.1 27.0 285 15-350 82-437 (706)
145 1ri6_A Putative isomerase YBHE 99.9 1.4E-23 4.8E-28 184.1 30.7 283 12-329 35-334 (343)
146 3u4y_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 177.5 32.3 265 4-309 30-307 (331)
147 1jmx_B Amine dehydrogenase; ox 99.9 3.1E-23 1E-27 182.5 25.6 286 19-351 4-328 (349)
148 2ojh_A Uncharacterized protein 99.9 2E-23 6.8E-28 179.1 22.9 241 8-296 35-292 (297)
149 1xfd_A DIP, dipeptidyl aminope 99.9 2E-23 6.9E-28 201.8 25.6 289 5-336 48-428 (723)
150 3scy_A Hypothetical bacterial 99.9 3.7E-22 1.3E-26 176.3 31.3 303 25-351 12-342 (361)
151 1z68_A Fibroblast activation p 99.9 1.5E-23 5E-28 202.5 22.6 337 18-395 19-448 (719)
152 1pby_B Quinohemoprotein amine 99.9 4.8E-23 1.7E-27 180.3 23.6 275 72-395 2-315 (337)
153 3vgz_A Uncharacterized protein 99.9 8E-22 2.7E-26 173.7 30.3 282 56-389 39-333 (353)
154 3hfq_A Uncharacterized protein 99.9 4.6E-22 1.6E-26 174.8 28.5 264 12-310 37-323 (347)
155 3o4h_A Acylamino-acid-releasin 99.9 3.6E-23 1.2E-27 194.6 20.4 233 56-346 20-274 (582)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 9.5E-22 3.3E-26 176.8 27.2 209 14-246 36-279 (434)
157 3pe7_A Oligogalacturonate lyas 99.9 3.1E-22 1.1E-26 178.8 23.8 293 6-347 22-381 (388)
158 3scy_A Hypothetical bacterial 99.9 8.4E-21 2.9E-25 167.6 32.6 276 13-326 48-360 (361)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 5.4E-21 1.9E-25 168.8 26.7 289 29-349 5-342 (365)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-21 1E-25 173.6 25.0 216 104-349 37-279 (434)
161 1z68_A Fibroblast activation p 99.9 5.9E-22 2E-26 191.3 16.1 291 62-390 20-391 (719)
162 4a5s_A Dipeptidyl peptidase 4 99.9 1E-20 3.6E-25 182.6 21.6 293 14-357 16-362 (740)
163 1jmx_B Amine dehydrogenase; ox 99.9 6.5E-20 2.2E-24 161.2 24.8 272 4-316 31-335 (349)
164 3azo_A Aminopeptidase; POP fam 99.9 7.4E-20 2.5E-24 175.0 25.9 294 8-352 17-373 (662)
165 3c5m_A Oligogalacturonate lyas 99.9 3.9E-20 1.3E-24 165.6 21.7 279 17-351 38-387 (396)
166 2oiz_A Aromatic amine dehydrog 99.9 2.2E-19 7.6E-24 157.6 25.4 304 25-382 14-360 (361)
167 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.9E-19 1.3E-23 156.9 26.6 257 14-307 39-342 (365)
168 3pe7_A Oligogalacturonate lyas 99.9 7.4E-20 2.5E-24 163.3 21.7 297 40-388 14-369 (388)
169 3fvz_A Peptidyl-glycine alpha- 99.9 1.7E-18 5.7E-23 150.4 29.4 263 14-349 23-323 (329)
170 1qks_A Cytochrome CD1 nitrite 99.8 9.1E-18 3.1E-22 154.6 33.9 288 24-349 165-478 (567)
171 2oiz_A Aromatic amine dehydrog 99.8 1.5E-18 5.1E-23 152.3 26.1 284 3-330 40-360 (361)
172 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-17 8.8E-22 140.2 32.5 245 12-349 27-281 (286)
173 2z2n_A Virginiamycin B lyase; 99.8 4.5E-16 1.5E-20 133.4 38.2 286 10-350 10-297 (299)
174 3azo_A Aminopeptidase; POP fam 99.8 5.6E-18 1.9E-22 162.0 27.8 298 53-396 19-375 (662)
175 2dg1_A DRP35, lactonase; beta 99.8 2E-17 6.8E-22 144.3 27.8 276 14-338 5-300 (333)
176 1qks_A Cytochrome CD1 nitrite 99.8 3.2E-16 1.1E-20 144.3 35.6 310 4-351 187-541 (567)
177 2gop_A Trilobed protease; beta 99.8 2.1E-17 7.3E-22 145.0 24.9 265 15-355 15-337 (347)
178 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.7E-22 161.6 23.3 213 104-350 17-296 (740)
179 3c5m_A Oligogalacturonate lyas 99.8 3.6E-18 1.2E-22 152.8 18.6 265 40-354 14-335 (396)
180 3e5z_A Putative gluconolactona 99.8 1.2E-15 4.2E-20 130.5 30.0 246 53-352 23-290 (296)
181 2bkl_A Prolyl endopeptidase; m 99.8 5.9E-17 2E-21 155.3 23.0 251 12-352 118-401 (695)
182 2xdw_A Prolyl endopeptidase; a 99.8 7E-16 2.4E-20 148.3 30.3 283 24-350 81-416 (710)
183 2qc5_A Streptogramin B lactona 99.8 3.5E-14 1.2E-18 121.7 36.5 281 12-347 17-299 (300)
184 3dsm_A Uncharacterized protein 99.8 9.5E-16 3.2E-20 132.8 25.9 263 34-347 15-301 (328)
185 2xdw_A Prolyl endopeptidase; a 99.7 7.8E-16 2.7E-20 148.0 27.9 249 13-308 123-416 (710)
186 3e5z_A Putative gluconolactona 99.7 2.7E-15 9.1E-20 128.3 27.0 249 7-309 20-289 (296)
187 2dg1_A DRP35, lactonase; beta 99.7 1.5E-14 5E-19 126.0 31.9 246 7-296 37-300 (333)
188 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-15 7.3E-20 128.3 25.4 246 101-390 27-280 (286)
189 2z2n_A Virginiamycin B lyase; 99.7 5.5E-14 1.9E-18 120.3 33.1 241 55-347 12-254 (299)
190 3sjl_D Methylamine dehydrogena 99.7 3.6E-15 1.2E-19 128.8 24.7 286 19-351 37-366 (386)
191 2gop_A Trilobed protease; beta 99.7 9.5E-16 3.2E-20 134.4 21.5 257 59-389 16-330 (347)
192 1rwi_B Serine/threonine-protei 99.7 8.5E-15 2.9E-19 123.4 26.2 241 59-351 25-267 (270)
193 3fvz_A Peptidyl-glycine alpha- 99.7 3.9E-15 1.3E-19 129.2 23.6 248 103-394 23-316 (329)
194 2mad_H Methylamine dehydrogena 99.7 1E-13 3.4E-18 121.7 32.6 284 21-351 27-353 (373)
195 3dsm_A Uncharacterized protein 99.7 2.7E-14 9.4E-19 123.6 28.1 256 16-325 45-319 (328)
196 1rwi_B Serine/threonine-protei 99.7 2.2E-14 7.5E-19 120.9 25.3 241 16-309 25-267 (270)
197 3no2_A Uncharacterized protein 99.7 4.2E-14 1.4E-18 118.7 26.4 219 70-336 4-231 (276)
198 2bkl_A Prolyl endopeptidase; m 99.7 2.2E-14 7.4E-19 137.6 26.1 282 70-397 78-404 (695)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.3E-13 4.3E-18 119.0 28.6 252 10-348 13-299 (314)
200 1yr2_A Prolyl oligopeptidase; 99.6 3.5E-14 1.2E-18 137.1 24.6 286 23-354 115-447 (741)
201 3no2_A Uncharacterized protein 99.6 3.6E-13 1.2E-17 113.1 25.6 243 25-317 4-263 (276)
202 1yr2_A Prolyl oligopeptidase; 99.6 7.9E-14 2.7E-18 134.6 24.2 247 13-309 161-444 (741)
203 2qc5_A Streptogramin B lactona 99.6 6.5E-12 2.2E-16 107.4 33.5 240 56-347 18-259 (300)
204 2mad_H Methylamine dehydrogena 99.6 4.7E-12 1.6E-16 111.0 32.9 268 3-313 56-357 (373)
205 2qe8_A Uncharacterized protein 99.6 1.3E-13 4.3E-18 120.3 21.8 287 4-345 9-318 (343)
206 3sjl_D Methylamine dehydrogena 99.6 7.7E-13 2.6E-17 114.3 25.7 280 3-328 68-384 (386)
207 3c75_H MADH, methylamine dehyd 99.6 3.9E-13 1.3E-17 118.4 23.3 287 24-351 82-405 (426)
208 3g4e_A Regucalcin; six bladed 99.6 9.6E-12 3.3E-16 106.1 31.2 241 8-337 6-261 (297)
209 3hrp_A Uncharacterized protein 99.6 4.5E-12 1.5E-16 112.8 30.1 258 15-346 131-408 (409)
210 1xip_A Nucleoporin NUP159; bet 99.5 1.3E-13 4.6E-18 119.6 15.0 180 16-233 39-231 (388)
211 3iuj_A Prolyl endopeptidase; h 99.5 2.3E-12 7.9E-17 123.2 24.8 247 12-351 126-408 (693)
212 2ghs_A AGR_C_1268P; regucalcin 99.5 5.8E-11 2E-15 102.6 31.1 229 16-337 50-291 (326)
213 3c75_H MADH, methylamine dehyd 99.5 5.9E-12 2E-16 110.9 24.9 270 2-313 107-409 (426)
214 3dr2_A Exported gluconolactona 99.5 5.5E-11 1.9E-15 101.8 26.9 239 8-343 38-302 (305)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7.2E-11 2.5E-15 101.6 25.3 208 102-351 16-259 (314)
216 1mda_H Methylamine dehydrogena 99.4 1.1E-11 3.9E-16 107.3 19.6 271 27-351 33-349 (368)
217 3q7m_A Lipoprotein YFGL, BAMB; 99.4 5.3E-10 1.8E-14 98.9 30.6 314 25-387 52-375 (376)
218 1xip_A Nucleoporin NUP159; bet 99.4 7.9E-12 2.7E-16 108.5 17.2 175 59-336 39-232 (388)
219 1mda_H Methylamine dehydrogena 99.4 3.2E-11 1.1E-15 104.5 18.6 273 3-327 55-366 (368)
220 3g4e_A Regucalcin; six bladed 99.4 7.1E-10 2.4E-14 94.5 26.6 204 102-351 11-232 (297)
221 3hrp_A Uncharacterized protein 99.4 1.2E-10 4.1E-15 103.6 22.3 246 104-395 131-405 (409)
222 3iuj_A Prolyl endopeptidase; h 99.4 1.4E-10 4.7E-15 111.0 24.1 250 102-397 127-412 (693)
223 1yiq_A Quinohemoprotein alcoho 99.3 6E-10 2.1E-14 105.9 26.0 288 26-336 121-537 (689)
224 2ghs_A AGR_C_1268P; regucalcin 99.3 6.2E-10 2.1E-14 96.1 23.7 195 105-348 50-260 (326)
225 1npe_A Nidogen, entactin; glyc 99.3 1.7E-08 5.7E-13 84.5 30.8 253 26-330 1-263 (267)
226 2qe8_A Uncharacterized protein 99.3 7.4E-11 2.5E-15 102.8 16.5 268 58-390 17-311 (343)
227 1kb0_A Quinohemoprotein alcoho 99.3 9.5E-10 3.3E-14 104.3 23.4 310 26-351 77-510 (677)
228 1yiq_A Quinohemoprotein alcoho 99.3 1.1E-09 3.6E-14 104.2 22.8 311 26-351 70-508 (689)
229 3dr2_A Exported gluconolactona 99.2 1.8E-09 6.1E-14 92.4 21.4 203 99-350 40-269 (305)
230 1kb0_A Quinohemoprotein alcoho 99.2 5.8E-09 2E-13 98.9 26.5 297 25-347 127-566 (677)
231 4a2l_A BT_4663, two-component 99.2 1.1E-07 3.8E-12 92.7 35.5 293 17-351 175-483 (795)
232 2ece_A 462AA long hypothetical 99.2 6.4E-09 2.2E-13 90.6 22.9 246 22-294 89-399 (462)
233 3hxj_A Pyrrolo-quinoline quino 99.2 3E-09 1E-13 92.1 20.4 268 13-349 58-325 (330)
234 2hz6_A Endoplasmic reticulum t 99.2 5.7E-11 1.9E-15 104.4 9.2 258 70-390 8-279 (369)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1E-07 3.5E-12 84.2 29.8 276 70-395 52-342 (376)
236 2ece_A 462AA long hypothetical 99.2 2.2E-08 7.4E-13 87.3 24.5 201 113-347 93-351 (462)
237 3hxj_A Pyrrolo-quinoline quino 99.2 9.1E-10 3.1E-14 95.4 16.3 303 18-391 23-325 (330)
238 1fwx_A Nitrous oxide reductase 99.2 1.2E-08 4.1E-13 92.1 22.9 258 70-351 100-434 (595)
239 1fwx_A Nitrous oxide reductase 99.1 1.1E-08 3.7E-13 92.5 20.7 253 25-308 100-433 (595)
240 4a2l_A BT_4663, two-component 99.1 3.6E-07 1.2E-11 89.1 33.3 292 17-351 133-439 (795)
241 2iwa_A Glutamine cyclotransfer 99.1 2.3E-07 7.9E-12 75.9 26.5 223 3-246 8-238 (266)
242 3nol_A Glutamine cyclotransfer 99.1 7.9E-08 2.7E-12 77.6 22.0 218 3-242 30-251 (262)
243 2fp8_A Strictosidine synthase; 99.1 3.1E-07 1.1E-11 79.1 27.3 159 15-189 19-216 (322)
244 1npe_A Nidogen, entactin; glyc 99.1 7.3E-07 2.5E-11 74.5 28.4 231 73-351 3-241 (267)
245 2hz6_A Endoplasmic reticulum t 99.0 8.9E-11 3E-15 103.1 3.5 182 118-351 11-195 (369)
246 2iwa_A Glutamine cyclotransfer 99.0 6.5E-08 2.2E-12 79.2 19.5 198 105-350 22-239 (266)
247 3v64_C Agrin; beta propeller, 99.0 1E-05 3.4E-10 70.2 33.3 247 14-314 33-283 (349)
248 2p4o_A Hypothetical protein; p 99.0 9.6E-06 3.3E-10 69.1 32.3 124 5-136 23-148 (306)
249 3v9f_A Two-component system se 98.9 1E-05 3.6E-10 78.7 35.9 292 15-351 211-527 (781)
250 1kv9_A Type II quinohemoprotei 98.9 5E-07 1.7E-11 85.7 25.9 285 26-336 117-520 (668)
251 3v9f_A Two-component system se 98.9 1.1E-05 3.9E-10 78.4 35.8 288 14-351 257-571 (781)
252 3v65_B Low-density lipoprotein 98.9 6.4E-06 2.2E-10 72.5 30.9 245 16-314 78-326 (386)
253 1kv9_A Type II quinohemoprotei 98.9 2.2E-07 7.4E-12 88.2 22.8 310 26-351 66-491 (668)
254 3mbr_X Glutamine cyclotransfer 98.9 1.6E-06 5.3E-11 69.5 24.0 219 3-242 8-230 (243)
255 3qqz_A Putative uncharacterize 98.9 3.2E-06 1.1E-10 68.7 25.6 221 8-243 20-251 (255)
256 3nol_A Glutamine cyclotransfer 98.9 1.3E-07 4.5E-12 76.3 17.2 183 105-337 44-244 (262)
257 3nok_A Glutaminyl cyclase; bet 98.9 1.6E-06 5.5E-11 70.0 23.3 208 4-233 43-253 (268)
258 3nok_A Glutaminyl cyclase; bet 98.8 8.1E-07 2.8E-11 71.7 19.9 181 105-336 56-253 (268)
259 1k3i_A Galactose oxidase precu 98.8 7E-07 2.4E-11 84.8 22.7 278 19-337 190-530 (656)
260 1ijq_A LDL receptor, low-densi 98.8 4E-05 1.4E-09 65.5 32.3 236 28-314 3-246 (316)
261 2ad6_A Methanol dehydrogenase 98.8 1.3E-06 4.4E-11 81.1 23.1 310 26-351 62-497 (571)
262 3p5b_L Low density lipoprotein 98.8 6.4E-05 2.2E-09 66.5 33.3 248 28-324 85-338 (400)
263 1w6s_A Methanol dehydrogenase 98.8 5.2E-06 1.8E-10 77.0 25.5 114 26-144 62-200 (599)
264 2ad6_A Methanol dehydrogenase 98.8 2.8E-06 9.7E-11 78.8 23.2 293 71-395 62-499 (571)
265 3mbr_X Glutamine cyclotransfer 98.8 3.6E-06 1.2E-10 67.4 20.6 184 104-337 21-223 (243)
266 1k3i_A Galactose oxidase precu 98.7 2.2E-06 7.6E-11 81.4 22.2 258 62-351 190-500 (656)
267 3sov_A LRP-6, low-density lipo 98.7 6.1E-05 2.1E-09 64.2 28.5 237 28-314 6-246 (318)
268 3v64_C Agrin; beta propeller, 98.7 8E-05 2.7E-09 64.6 29.7 220 81-349 53-276 (349)
269 3v65_B Low-density lipoprotein 98.7 4.5E-05 1.5E-09 67.2 28.0 221 80-349 95-319 (386)
270 1w6s_A Methanol dehydrogenase 98.7 7E-06 2.4E-10 76.2 23.6 296 71-395 62-508 (599)
271 1flg_A Protein (quinoprotein e 98.7 2.3E-05 7.9E-10 72.8 26.4 113 25-142 68-200 (582)
272 3m0c_C LDL receptor, low-densi 98.7 0.00018 6E-09 69.1 32.6 237 28-313 397-639 (791)
273 2fp8_A Strictosidine synthase; 98.7 9.1E-06 3.1E-10 69.9 22.0 210 104-348 19-269 (322)
274 3tc9_A Hypothetical hydrolase; 98.6 6.3E-05 2.1E-09 67.2 27.5 243 59-347 138-429 (430)
275 2xe4_A Oligopeptidase B; hydro 98.6 3.6E-05 1.2E-09 74.2 26.4 250 59-351 175-461 (751)
276 1flg_A Protein (quinoprotein e 98.6 8.9E-06 3E-10 75.6 20.6 167 26-195 117-361 (582)
277 4hw6_A Hypothetical protein, I 98.6 0.00028 9.4E-09 63.1 29.5 243 59-347 140-432 (433)
278 3sov_A LRP-6, low-density lipo 98.6 0.00026 9E-09 60.3 28.7 225 80-350 12-240 (318)
279 2xe4_A Oligopeptidase B; hydro 98.6 2.2E-05 7.4E-10 75.8 23.8 116 16-136 175-305 (751)
280 4hw6_A Hypothetical protein, I 98.5 0.00014 4.7E-09 65.0 25.7 213 15-243 139-372 (433)
281 3tc9_A Hypothetical hydrolase; 98.5 0.00013 4.4E-09 65.2 24.9 158 16-189 138-301 (430)
282 3kya_A Putative phosphatase; s 98.5 0.00044 1.5E-08 62.0 27.8 262 59-350 140-477 (496)
283 3qqz_A Putative uncharacterize 98.5 0.00034 1.2E-08 56.9 27.5 217 97-346 20-251 (255)
284 2xbg_A YCF48-like protein; pho 98.5 0.00053 1.8E-08 58.8 32.9 276 14-346 35-320 (327)
285 3ei3_A DNA damage-binding prot 98.4 0.0017 5.7E-08 65.3 34.4 76 14-89 553-635 (1158)
286 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0012 4.1E-08 61.9 32.9 232 28-312 8-243 (628)
287 1ijq_A LDL receptor, low-densi 98.4 0.00064 2.2E-08 58.0 29.9 222 81-350 10-240 (316)
288 1n7d_A LDL receptor, low-densi 98.4 4.4E-06 1.5E-10 79.5 14.7 240 35-325 385-633 (699)
289 3p5b_L Low density lipoprotein 98.3 0.0013 4.3E-08 58.2 29.6 229 73-350 85-322 (400)
290 3kya_A Putative phosphatase; s 98.3 0.0009 3.1E-08 60.0 26.7 160 16-188 140-340 (496)
291 3s94_A LRP-6, low-density lipo 98.3 0.0024 8.1E-08 59.8 38.4 162 15-191 40-204 (619)
292 2xzh_A Clathrin heavy chain 1; 98.3 0.001 3.4E-08 55.3 31.8 274 34-351 47-335 (365)
293 3m0c_C LDL receptor, low-densi 98.2 0.0021 7E-08 61.8 28.5 204 14-246 423-633 (791)
294 3ei3_A DNA damage-binding prot 98.2 0.0035 1.2E-07 63.0 30.9 115 16-134 515-635 (1158)
295 2p4o_A Hypothetical protein; p 98.2 0.0011 3.8E-08 56.3 23.1 189 15-234 72-276 (306)
296 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0082 2.8E-07 56.3 38.4 160 15-190 37-198 (628)
297 2xzh_A Clathrin heavy chain 1; 98.0 0.0043 1.5E-07 51.6 21.9 264 79-396 47-338 (365)
298 1n7d_A LDL receptor, low-densi 98.0 9.6E-05 3.3E-09 70.4 14.1 222 80-350 385-616 (699)
299 2p9w_A MAL S 1 allergenic prot 98.0 0.00044 1.5E-08 58.0 16.2 169 11-189 9-215 (334)
300 3amr_A 3-phytase; beta-propell 97.9 0.0052 1.8E-07 52.1 21.7 192 26-244 40-262 (355)
301 1bpo_A Protein (clathrin); cla 97.9 0.0092 3.1E-07 51.8 33.4 274 34-350 46-333 (494)
302 3s94_A LRP-6, low-density lipo 97.9 0.016 5.5E-07 54.3 37.7 159 15-191 84-245 (619)
303 2g8s_A Glucose/sorbosone dehyd 97.9 0.011 3.7E-07 51.2 28.2 271 58-346 18-350 (353)
304 3amr_A 3-phytase; beta-propell 97.9 0.004 1.4E-07 52.8 19.9 214 71-314 40-272 (355)
305 3sre_A PON1, serum paraoxonase 97.8 0.0091 3.1E-07 51.2 22.3 199 60-304 52-296 (355)
306 2xbg_A YCF48-like protein; pho 97.8 0.011 3.9E-07 50.5 29.4 238 14-304 79-320 (327)
307 2ism_A Putative oxidoreductase 97.8 0.013 4.3E-07 50.7 29.2 255 58-336 31-333 (352)
308 3sre_A PON1, serum paraoxonase 97.7 0.017 5.8E-07 49.6 23.7 199 17-243 52-296 (355)
309 2p9w_A MAL S 1 allergenic prot 97.7 0.015 5.2E-07 48.8 23.6 225 99-348 8-265 (334)
310 2vpj_A Kelch-like protein 12; 97.7 0.019 6.6E-07 48.3 23.0 149 25-192 14-187 (301)
311 2ism_A Putative oxidoreductase 97.4 0.047 1.6E-06 47.1 29.1 103 15-123 31-153 (352)
312 3ii7_A Kelch-like protein 7; p 97.4 0.043 1.5E-06 46.3 22.5 229 71-350 12-274 (306)
313 3a9g_A Putative uncharacterize 97.4 0.059 2E-06 46.6 31.2 254 58-336 29-330 (354)
314 2g8s_A Glucose/sorbosone dehyd 97.4 0.06 2E-06 46.5 28.0 106 14-123 17-148 (353)
315 2xn4_A Kelch-like protein 2; s 97.3 0.053 1.8E-06 45.6 23.5 231 70-351 15-279 (302)
316 2vpj_A Kelch-like protein 12; 97.3 0.055 1.9E-06 45.5 24.2 230 70-350 14-280 (301)
317 1xi4_A Clathrin heavy chain; a 97.3 0.036 1.2E-06 55.9 20.3 266 80-396 47-337 (1630)
318 3ii7_A Kelch-like protein 7; p 97.3 0.066 2.3E-06 45.1 23.0 148 26-192 12-181 (306)
319 1cru_A Protein (soluble quinop 97.3 0.1 3.4E-06 46.8 32.8 111 58-177 27-162 (454)
320 1xi4_A Clathrin heavy chain; a 97.2 0.071 2.4E-06 53.8 21.8 274 34-351 46-334 (1630)
321 3pbp_A Nucleoporin NUP82; beta 97.2 0.05 1.7E-06 47.3 18.1 155 24-186 30-209 (452)
322 2xn4_A Kelch-like protein 2; s 97.2 0.085 2.9E-06 44.3 23.4 149 25-192 15-185 (302)
323 3a9g_A Putative uncharacterize 97.2 0.1 3.4E-06 45.1 29.8 104 15-123 29-153 (354)
324 4asc_A Kelch repeat and BTB do 97.1 0.099 3.4E-06 44.3 21.3 147 28-193 7-178 (315)
325 3das_A Putative oxidoreductase 97.1 0.11 3.6E-06 44.5 31.8 258 57-336 31-326 (347)
326 1tl2_A L10, protein (tachylect 97.1 0.037 1.3E-06 43.3 14.6 118 104-240 41-158 (236)
327 3ott_A Two-component system se 97.1 0.24 8.2E-06 47.9 32.0 272 14-339 21-299 (758)
328 1zgk_A Kelch-like ECH-associat 97.0 0.13 4.3E-06 43.4 23.3 189 24-246 23-241 (308)
329 1tl2_A L10, protein (tachylect 97.0 0.063 2.2E-06 42.0 15.1 155 159-341 42-203 (236)
330 1zgk_A Kelch-like ECH-associat 96.9 0.15 5.3E-06 42.9 22.4 230 70-350 24-289 (308)
331 4asc_A Kelch repeat and BTB do 96.8 0.2 6.8E-06 42.4 22.7 227 73-351 7-280 (315)
332 3pbp_A Nucleoporin NUP82; beta 96.7 0.06 2.1E-06 46.8 14.7 109 222-348 27-158 (452)
333 3das_A Putative oxidoreductase 96.7 0.26 8.8E-06 42.1 28.5 112 9-123 26-158 (347)
334 2woz_A Kelch repeat and BTB do 96.7 0.25 8.5E-06 41.9 21.4 146 27-192 17-187 (318)
335 1bpo_A Protein (clathrin); cla 96.4 0.46 1.6E-05 41.6 27.6 202 20-246 71-290 (494)
336 2zwa_A Leucine carboxyl methyl 96.1 0.73 2.5E-05 43.9 19.5 158 24-191 396-579 (695)
337 2woz_A Kelch repeat and BTB do 96.1 0.57 1.9E-05 39.6 21.9 104 73-192 18-139 (318)
338 2zwa_A Leucine carboxyl methyl 96.0 0.93 3.2E-05 43.2 20.1 154 70-246 397-578 (695)
339 2uvk_A YJHT; unknown function, 95.9 0.75 2.6E-05 39.6 18.7 52 298-351 286-345 (357)
340 3s25_A Hypothetical 7-bladed b 95.9 0.67 2.3E-05 38.8 23.6 244 24-346 23-291 (302)
341 2uvk_A YJHT; unknown function, 95.6 0.96 3.3E-05 38.9 21.0 95 25-125 19-128 (357)
342 2be1_A Serine/threonine-protei 95.2 1.3 4.3E-05 37.7 18.5 115 27-143 11-138 (339)
343 3ott_A Two-component system se 95.1 2.5 8.6E-05 40.8 35.2 286 15-347 146-447 (758)
344 1cru_A Protein (soluble quinop 94.8 2.2 7.4E-05 38.2 32.8 106 15-123 27-162 (454)
345 3s25_A Hypothetical 7-bladed b 94.6 1.7 6E-05 36.3 21.9 178 20-245 58-255 (302)
346 2be1_A Serine/threonine-protei 92.5 0.2 7E-06 42.5 5.8 107 288-395 11-135 (339)
347 3sbq_A Nitrous-oxide reductase 90.1 11 0.00037 34.4 26.4 112 217-336 324-453 (638)
348 3q6k_A 43.2 kDa salivary prote 89.9 9.1 0.00031 33.1 21.8 162 127-306 124-306 (381)
349 3sbq_A Nitrous-oxide reductase 89.8 0.22 7.5E-06 44.9 3.4 77 104-189 323-408 (638)
350 4gq2_M Nucleoporin NUP120; bet 87.9 23 0.00078 35.2 16.8 37 276-313 237-273 (950)
351 3qhy_B Beta-lactamase inhibito 85.5 14 0.00048 30.4 21.5 223 104-391 24-247 (282)
352 4hvt_A Ritya.17583.B, post-pro 84.8 28 0.00095 33.2 23.0 116 17-134 131-277 (711)
353 3qhy_B Beta-lactamase inhibito 83.9 17 0.00057 29.9 24.5 224 58-349 24-247 (282)
354 3q6k_A 43.2 kDa salivary prote 83.5 21 0.00072 30.8 20.2 221 15-245 26-306 (381)
355 4gq2_M Nucleoporin NUP120; bet 82.2 22 0.00075 35.3 13.4 39 105-144 237-275 (950)
356 2wg3_C Hedgehog-interacting pr 81.5 29 0.00099 31.0 28.2 108 15-125 14-159 (463)
357 3f7f_A Nucleoporin NUP120; nuc 78.5 10 0.00036 35.7 9.1 93 216-314 162-258 (729)
358 3zwu_A Alkaline phosphatase PH 75.0 13 0.00044 34.4 8.6 58 277-335 478-548 (592)
359 4fhn_B Nucleoporin NUP120; pro 74.1 26 0.00089 35.7 11.5 36 277-313 240-275 (1139)
360 4a9v_A PHOX; hydrolase, beta-p 66.5 34 0.0012 31.4 9.2 58 277-335 478-548 (592)
361 1sqj_A OXG-RCBH, oligoxylogluc 61.9 1.2E+02 0.0041 29.4 15.8 157 14-179 14-190 (789)
362 1suu_A DNA gyrase subunit A; t 58.8 79 0.0027 26.4 24.0 205 171-391 9-232 (312)
363 2wg3_C Hedgehog-interacting pr 54.7 1.2E+02 0.004 27.1 30.3 55 58-114 14-79 (463)
364 3zwu_A Alkaline phosphatase PH 52.6 57 0.002 30.2 8.4 58 17-77 478-548 (592)
365 3l6v_A GYRA, DNA gyrase subuni 52.4 1.1E+02 0.0039 26.2 25.7 210 112-348 4-265 (370)
366 1zi0_A DNA gyrase subunit A; b 52.4 1E+02 0.0034 25.6 22.2 233 167-426 1-260 (307)
367 4fhn_B Nucleoporin NUP120; pro 51.7 11 0.00037 38.4 3.9 36 16-51 239-274 (1139)
368 3f7f_A Nucleoporin NUP120; nuc 49.8 24 0.00083 33.3 5.5 35 15-51 222-256 (729)
369 3b7f_A Glycosyl hydrolase, BNR 49.1 1.3E+02 0.0044 25.9 27.2 27 159-186 233-259 (394)
370 4a9v_A PHOX; hydrolase, beta-p 45.9 1.1E+02 0.0038 28.2 8.9 60 15-77 476-548 (592)
371 4hvt_A Ritya.17583.B, post-pro 36.7 2.9E+02 0.0098 26.4 24.2 102 235-347 319-429 (711)
372 3mez_B Mannose-specific lectin 35.1 1E+02 0.0035 20.8 9.5 47 321-387 59-105 (113)
373 3mez_B Mannose-specific lectin 32.7 1.1E+02 0.0039 20.6 9.4 24 220-244 60-83 (113)
374 3b7f_A Glycosyl hydrolase, BNR 30.8 2.5E+02 0.0087 24.0 24.3 28 159-186 116-144 (394)
375 1q47_A Semaphorin 3A; beta pro 29.5 1.4E+02 0.0049 26.8 7.1 56 288-343 422-487 (495)
376 3mvd_K Regulator of chromosome 29.3 2.8E+02 0.0097 24.0 33.2 260 59-348 76-374 (423)
377 3a0f_A Xyloglucanase; beta-pro 28.5 4E+02 0.014 25.6 15.8 161 13-180 19-203 (763)
378 3al9_A Plexin-A2; beta-propell 27.3 2.2E+02 0.0074 26.0 7.9 73 105-184 401-476 (539)
379 3al9_A Plexin-A2; beta-propell 27.1 2.2E+02 0.0074 26.0 7.9 70 59-129 401-475 (539)
380 4gz8_A Semaphorin-3A; multi-do 26.6 1.9E+02 0.0064 27.3 7.4 56 288-343 430-495 (667)
381 3mez_A Mannose-specific lectin 23.5 1.7E+02 0.0059 19.6 7.3 15 373-387 87-101 (111)
382 3nvq_A Semaphorin-7A; beta-pro 22.9 2.5E+02 0.0085 26.0 7.4 56 288-343 381-444 (590)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-50 Score=363.92 Aligned_cols=288 Identities=20% Similarity=0.342 Sum_probs=258.7
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++.... +.+|...|.+++|+| ++.+|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~-l~~h~~~V~~v~~~~--~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-LKGHTDSVQDISFDH--SGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-ECCCSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-EeccCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Confidence 567889999999999999999999999999999999999876655 579999999999999 99999999999999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
|+.+.+.+ ..+.+|...|.+++|+|++. .|++++.|++|++||++++.....+.. |...|.++.++
T Consensus 178 d~~~~~~~--~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~-----------h~~~v~~~~~~ 243 (410)
T 1vyh_C 178 DFQGFECI--RTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTG-----------HREWVRMVRPN 243 (410)
T ss_dssp ETTSSCEE--ECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEEC
T ss_pred eCCCCcee--EEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeC-----------CCccEEEEEEC
Confidence 99877665 55889999999999999998 578999999999999999988777654 56779999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC--------------------
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-------------------- 226 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------- 226 (439)
|++ .+|++|+.|+.|++||+++++. ...+..|...|.+++|+|+
T Consensus 244 ~~g-~~l~s~s~D~~v~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 244 QDG-TLIASCSNDQTVRVWVVATKEC---------------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp TTS-SEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCce---------------eeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 987 8999999999999999987652 1233678889999999996
Q ss_pred CCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 227 SELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 227 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
+.+|++++ |+.|++||+.++ .....+.+|... |.+++ |+|++++|++|+.||.|++||+.
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~----------------~~~~~~~~h~~~--v~~v~-~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTG----------------MCLMTLVGHDNW--VRGVL-FHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTT----------------EEEEEEECCSSC--EEEEE-ECSSSSCEEEEETTTEEEEECCT
T ss_pred CCEEEEEeCCCeEEEEECCCC----------------ceEEEEECCCCc--EEEEE-EcCCCCEEEEEeCCCeEEEEECC
Confidence 56788886 999999999877 567788888876 99999 89999999999999999999999
Q ss_pred CCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 306 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 306 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
+++++..+.+|...|++++|+|++++|++|+.||+|++|++
T Consensus 369 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999999999999999986
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.7e-50 Score=351.71 Aligned_cols=293 Identities=16% Similarity=0.262 Sum_probs=255.5
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
++..++|++|.+.|++++|+|++++|++|+.||+|++||+.++..+.. +..|...|.+++|+| ++++|++++.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-IPLRSSWVMTCAYAP--SGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-EECSSSCEEEEEECT--TSSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-eecCCccEEEEEECC--CCCEEEEEeCCCeE
Confidence 456788999999999999999999999999999999999998876655 478999999999999 99999999999999
Q ss_pred EEEEcccCce--eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 84 RLGQIFEDGR--MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 84 ~iw~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
++|++.+... .....+.+|...|.++.|++++. +++++.|+.|++||+++++....+.. |...|.
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~-----------h~~~v~ 188 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTG-----------HTGDVM 188 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECC-----------CSSCEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcC-----------CCCceE
Confidence 9999976542 23456788999999999999874 67999999999999999887766543 677899
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 240 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i 240 (439)
+++|+|++ .++++|+.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++ |+.|++
T Consensus 189 ~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 189 SLSLAPDT-RLFVSGACDASAKLWDVREGMC---------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCCC-CEEEEEeCCCcEEEEECCCCee---------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 99999987 8999999999999999987652 223367889999999999999999987 999999
Q ss_pred EEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccce
Q 013644 241 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 320 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 320 (439)
||++.+ .....+..+.....+.+++ |+|++++|++|+.||.|++||+.+++.+..+.+|...|
T Consensus 253 wd~~~~----------------~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v 315 (340)
T 1got_B 253 FDLRAD----------------QELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp EETTTT----------------EEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EECCCC----------------cEEEEEccCCcccceEEEE-ECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence 999865 3334443333223488999 89999999999999999999999999999999999999
Q ss_pred EEEeecCCCcEEEEEecCCeEEEec
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
.+++|+|++++|++|+.||.|++|+
T Consensus 316 ~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 316 SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999996
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.5e-50 Score=379.68 Aligned_cols=373 Identities=14% Similarity=0.165 Sum_probs=280.0
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-ee-------------------------------
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FS------------------------------- 51 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~------------------------------- 51 (439)
.+....|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ..
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 4567789999999999999999999999999999999998643211 11
Q ss_pred -------------eecCCcccEEEEEEeecCCCc-EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCc
Q 013644 52 -------------YLSGHLDNIFQTRIMPFTDDR-KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY 117 (439)
Q Consensus 52 -------------~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 117 (439)
.+.+|...|++++|+| ++. .|++++.|++|++||..+.+.. ..+.+|...|.+++|+|+++
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~--~~l~~H~~~V~~v~fspdg~- 203 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFK--STFGEHTKFVHSVRYNPDGS- 203 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEE--EEECCCSSCEEEEEECTTSS-
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEe--eeeccccCceEEEEECCCCC-
Confidence 1245667777788877 665 5899999999999998765544 56889999999999999998
Q ss_pred EEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCC
Q 013644 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS 197 (439)
Q Consensus 118 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 197 (439)
+|++++.|++|++||+.+++....+.... .....|...|.+++|+|++ .+|++++.|+.|++||+.+++....+.
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~----~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDS----LKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTT----SSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEECCCCcEeeeecccc----ccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 68899999999999999888765542110 0111378889999999987 899999999999999999876544322
Q ss_pred CCCCcc----------------------------cccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 013644 198 SDTPVD----------------------------TFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLG 248 (439)
Q Consensus 198 ~~~~~~----------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 248 (439)
...... .......+.+|...|.+++|+|++++|++++ |+.|++||+.++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 111000 0001223467899999999999999999997 99999999986532
Q ss_pred CCCCC-CCc-------------------------cccccc----------------------------------------
Q 013644 249 PSPLS-LSP-------------------------EDLQKR---------------------------------------- 262 (439)
Q Consensus 249 ~~~~~-~~~-------------------------~~~~~~---------------------------------------- 262 (439)
..... ... ++....
T Consensus 359 ~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~ 438 (611)
T 1nr0_A 359 NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438 (611)
T ss_dssp EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence 11100 000 000000
Q ss_pred -ccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce--eEeecccccceEEEeecCCCcEEEEEecCC
Q 013644 263 -EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 263 -~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
.....+. +. ..+.+++ |+|+|++|++|+.|+.|++||+.+++. +.. .+|...|++++|+|++++|++++.|+
T Consensus 439 ~~~~~~~~-~~--~~v~~va-~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 439 HGKLTEVP-IS--YNSSCVA-LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp TTEEEEEE-CS--SCEEEEE-ECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeeee-cC--CCceEEE-EeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 0000000 11 2367888 899999999999999999999987654 234 67999999999999999999999999
Q ss_pred eEEEeccCC-CCCC---CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 340 TVKLWAPMP-TDFP---PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 340 ~i~iw~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
+|++|++.+ +++. .+..|...+..+. +.+++..+++++.|++|++|++.+++
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999976 4432 2334777776665 56788899999999999999998764
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-50 Score=347.65 Aligned_cols=290 Identities=21% Similarity=0.328 Sum_probs=254.8
Q ss_pred eeeeeeccccceEEEEECCC----CCEEEEecCCCeEEEEeCCCCcce-eeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 6 LCGKLHGHKGCVNAVEFNST----GDFLVSGSDDKLVIFWDWKDRREK-FSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
+.+.+++|.+.|++++|+|+ +++|+||+.|++|+||++...... ...+.+|...|.+++|+| ++.++++++.|
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~~l~s~s~D 101 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLD 101 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSSEEEEEETT
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCCEEEEEeCC
Confidence 34667899999999999985 679999999999999999876532 334689999999999999 99999999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
++|++||+.+++.+ ..+..|...+.+++|+|+++ +|++++.|+.|++|++++++....+.. +...+
T Consensus 102 ~~i~lWd~~~~~~~--~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~-----------~~~~v 167 (321)
T 3ow8_A 102 AHIRLWDLENGKQI--KSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDT-----------RGKFI 167 (321)
T ss_dssp SEEEEEETTTTEEE--EEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEEC-----------SSSCE
T ss_pred CcEEEEECCCCCEE--EEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecC-----------CCceE
Confidence 99999999887765 45677888999999999998 678999999999999999887666543 45569
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 239 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~ 239 (439)
.+++|+|++ ++|++|+.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++ |+.|+
T Consensus 168 ~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~---------------~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 168 LSIAYSPDG-KYLASGAIDGIINIFDIATGKL---------------LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred EEEEECCCC-CEEEEEcCCCeEEEEECCCCcE---------------EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 999999987 8999999999999999988653 223367888999999999999999997 99999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccc
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 319 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 319 (439)
+||++.+ .....+.+|... |.+++ |+|++++|++++.|+.|++||+.+++++..+.+|...
T Consensus 232 iwd~~~~----------------~~~~~~~~h~~~--v~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~ 292 (321)
T 3ow8_A 232 IYDVQHA----------------NLAGTLSGHASW--VLNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292 (321)
T ss_dssp EEETTTC----------------CEEEEECCCSSC--EEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEECCCc----------------ceeEEEcCCCCc--eEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc
Confidence 9999876 466778888876 99999 8999999999999999999999999999999999999
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
|.+++|+|++++|++++.||.|++||.
T Consensus 293 v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 293 VWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999996
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-49 Score=342.16 Aligned_cols=295 Identities=17% Similarity=0.238 Sum_probs=254.3
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
++++.++|++|.+.|++++|+|++++|++|+.||+|++||+.++..+.. +..|..+|.+++|+| ++++|++|+.|++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS-IQVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE-eeccCCcEEEEEEeC--CCCEEEEECCCCE
Confidence 5788999999999999999999999999999999999999998876555 578999999999999 9999999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCcee-eEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATR-LFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~ 161 (439)
|++||+.+++.+ ..+.+|...|.+++|+|+++ +|++|+.|++|++||++++.... .+.. |...|.
T Consensus 79 i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~-----------h~~~v~ 144 (304)
T 2ynn_A 79 IRVFNYNTGEKV--VDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEG-----------HEHFVM 144 (304)
T ss_dssp EEEEETTTCCEE--EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECC-----------CCSCEE
T ss_pred EEEEECCCCcEE--EEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcc-----------cCCcEE
Confidence 999999888766 55889999999999999998 67899999999999999875432 2222 677899
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCEEEEec-CCeE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN-DELV 238 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-d~~i 238 (439)
+++|+|.++.+|++|+.|+.|++||++.... .......+...+..+.|+| ++.+|++++ |+.|
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i 210 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeE
Confidence 9999997668999999999999999986541 1222345667788999986 677888886 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
++||++++ +....+.+|... |.+++ |+|++++|++|+.||.|++||+.+++++..+..|..
T Consensus 211 ~iWd~~~~----------------~~~~~~~~h~~~--v~~~~-~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 211 KIWDYQTK----------------SCVATLEGHMSN--VSFAV-FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp EEEETTTT----------------EEEEEEECCSSC--EEEEE-ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS
T ss_pred EEEeCCCC----------------ccceeeCCCCCC--EEEEE-ECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc
Confidence 99999876 677888999876 88898 899999999999999999999999999999999999
Q ss_pred ceEEEeecCCCc--EEEEEecCCeEEEeccCC
Q 013644 319 VVNQLEPHPHIP--MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 319 ~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~ 348 (439)
.+.+++|+|++. ++++|+.| .+.+|++..
T Consensus 272 ~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 272 RSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp SEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred cEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 999999999875 57777655 577887754
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-50 Score=360.82 Aligned_cols=308 Identities=17% Similarity=0.285 Sum_probs=258.6
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
.+.+.++|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.... +..|...|.+++|+| ++++|++|+.|+.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-~~~h~~~v~~~~~s~--~g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA-IKLHCPWVMECAFAP--NGQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE-EECCCTTCCCCEECT--TSSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE-EecCCCCEEEEEECC--CCCEEEEeeCCCc
Confidence 3456788999999999999999999999999999999999998876655 578999999999999 9999999999999
Q ss_pred EEEEEcccCc-----eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 83 VRLGQIFEDG-----RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 83 i~iw~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
+++|++.+.. ......+.+|.+.|.++.|.|++...|++|+.|++|++||+++++.+..+.... ...|.
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~------~~~h~ 205 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF------PSGHT 205 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS------SSSCC
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc------CCCCc
Confidence 9999996532 122345778999999999999876678899999999999999998776553211 12267
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 236 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~ 236 (439)
..|.+++|+|.++++|++|+.|+.|++||++... .....+.+|...|.+++|+|++++|++++ |+
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 7899999988656899999999999999998532 12233467899999999999999999997 99
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-----cceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 311 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 311 (439)
.|++||++++ .....+..+.. ...+.+++ |+|+|++|++|+.||.|++||+.+++.+.
T Consensus 272 ~i~lwd~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 272 TCRLFDMRTG----------------HQLQVYNREPDRNDNELPIVTSVA-FSISGRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp CEEEEETTTT----------------EEEEEECCCCSSSCCSSCSCSEEE-ECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred eEEEEECCCC----------------cEEEEecccccccccccCceEEEE-ECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence 9999999876 33444433321 11378888 89999999999999999999999998887
Q ss_pred ee----cccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 312 LM----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 312 ~~----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
.+ .+|.+.|++++|+|++++|++|+.||+|++|++.+.+
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 76 6899999999999999999999999999999997653
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-49 Score=345.33 Aligned_cols=320 Identities=15% Similarity=0.231 Sum_probs=254.1
Q ss_pred ccceeeeeecccc-ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce--eeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 3 RINLCGKLHGHKG-CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK--FSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 3 ~~~~~~~l~~h~~-~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
.++++++|++|.+ .|.+++|+|+|++||+|+.|++|+||++.++... .....+|...|.+++|+| ++++|++++.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEEC
Confidence 5778999999998 9999999999999999999999999999877533 223468999999999999 9999999999
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
|+++++|++..+.......+.+|...|.+++|+|+++ +|++++.|+.|++||++.+.....+.... .|...
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~h~~~ 152 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLN--------SHTQD 152 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEEC--------CCCSC
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEec--------CcCCC
Confidence 9999999998776555577889999999999999998 68899999999999998875443332211 16778
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeE
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 238 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i 238 (439)
|.+++|+|++ .+|++|+.|+.|++||++.++. .....+.+|...|.+++|+|++++|++++ |+.|
T Consensus 153 v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~-------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 153 VKHVVWHPSQ-ELLASASYDDTVKLYREEEDDW-------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEEEECSSS-SCEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEEEECCCC-CEEEEEeCCCcEEEEEecCCCE-------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 9999999987 8999999999999999886531 11233477899999999999999999987 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeC-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc---------
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--------- 308 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------- 308 (439)
++|+............... .........+.+ |.. .|.+++ |+|++..|++++.|+.|++|+...+.
T Consensus 219 ~iW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~--~v~~v~-~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGS-DPSWKCICTLSGFHSR--TIYDIA-WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp EEEEEECTTCTTCCCCC----CEEEEEEEECSSCSS--CEEEEE-ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred EEeccccCCCCccceeecc-CCccceeEEecCCCCC--cEEEEE-EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 9999765432221111100 011123334444 444 499999 89999999999999999999986542
Q ss_pred eeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCCCC
Q 013644 309 LVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 309 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 351 (439)
......+|...|++++|+|++. +||+|+.||+|++|++..++.
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 1223468999999999999985 999999999999999987654
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.8e-49 Score=345.77 Aligned_cols=295 Identities=19% Similarity=0.298 Sum_probs=254.5
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
++..++|++|.+.|++++|+|++++||||+.||+|+|||..++..... +..|...|.+++|+| ++.+|++++.|+.+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~~~~v~~~~~sp--~g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA-VTMPCTWVMACAYAP--SGCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCEEEECT--TSSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE-EecCCCCEEEEEECC--CCCEEEEeeCCCCE
Confidence 456788999999999999999999999999999999999988876555 467888999999999 99999999999999
Q ss_pred EEEEcccCc----eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 84 RLGQIFEDG----RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 84 ~iw~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
++|++.... ......+..|...|.+++|+|++. .|++++.|++|++||+++++.+..+.. |...
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~-----------h~~~ 198 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHG-----------HGAD 198 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSC
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcC-----------CCCC
Confidence 999986432 122345678999999999999997 577999999999999999988777754 5677
Q ss_pred eEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 160 LNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 160 v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
|.+++|+|.. +++|++|+.||.|++||+++++. ...+..|...|.+++|+|++.+|++++ |+.
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---------------VQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 9999998852 37999999999999999998652 123367889999999999999999987 999
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 317 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 317 (439)
|++||++.. .....+..+.....+.++. |+|++++|++|+.|+.|++||+.+++.+..+.+|.
T Consensus 264 v~lwd~~~~----------------~~~~~~~~~~~~~~~~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~ 326 (354)
T 2pbi_B 264 CRLYDLRAD----------------REVAIYSKESIIFGASSVD-FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326 (354)
T ss_dssp EEEEETTTT----------------EEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred EEEEECCCC----------------cEEEEEcCCCcccceeEEE-EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence 999999865 3334444443333478888 89999999999999999999999999999999999
Q ss_pred cceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 318 HVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 318 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
..|++++|+|++++|++|+.||+|++|+
T Consensus 327 ~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999996
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.2e-49 Score=372.36 Aligned_cols=352 Identities=13% Similarity=0.157 Sum_probs=274.6
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeec------CCcccEEEEEEeecCCCcEEEE
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLS------GHLDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s 76 (439)
..++.++|.+|.+.|++++|+|+|++||+|+.|++|++||+.+++....+.. +|.+.|.+++|+| ++.+|++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s 256 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIAS 256 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEE
T ss_pred CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEE
Confidence 3566788999999999999999999999999999999999988876554422 7999999999999 9999999
Q ss_pred ecCCCcEEEEEcccCceee-----------------------------------------eEEecCCCCceEEEEEccCC
Q 013644 77 SSADGQVRLGQIFEDGRMD-----------------------------------------TKRLGKHQGRVYKLAVEPGS 115 (439)
Q Consensus 77 ~~~dg~i~iw~~~~~~~~~-----------------------------------------~~~~~~~~~~v~~i~~~~~~ 115 (439)
++.|++|++||+.+++... ...+.+|...|.+++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 9999999999998765432 12346799999999999999
Q ss_pred CcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCC
Q 013644 116 PYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP 195 (439)
Q Consensus 116 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 195 (439)
+ +|++++.|++|++||+.+++....+. ..|...|.+++|++++ .+++++.|+.+++|++........
T Consensus 337 ~-~l~s~s~D~~v~~Wd~~~~~~~~~~~----------~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 337 K-TLFSADAEGHINSWDISTGISNRVFP----------DVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp S-EEEEEETTSCEEEEETTTCCEEECSS----------CSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTT
T ss_pred C-EEEEEeCCCcEEEEECCCCceeeecc----------cCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCcccccc
Confidence 8 67899999999999999887654321 1267789999999854 788999999999999887543221
Q ss_pred CC----CCCCccc--cccc-------------------ccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCC
Q 013644 196 IS----SDTPVDT--FCPR-------------------HLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGP 249 (439)
Q Consensus 196 ~~----~~~~~~~--~~~~-------------------~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 249 (439)
.. ....... +.+. .....+...+.+++|+|+|++|++++ |+.|++||+..+.
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-- 481 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-- 481 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc--
Confidence 00 0000000 0000 00012456789999999999999997 9999999987641
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC-CceeEe--ecccccceEEEeec
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL--MVGDRHVVNQLEPH 326 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~h~~~v~~~~~s 326 (439)
...... .+|... |.+++ |+|+|++|++++.|+.|++|++.+ ++++.. +.+|...|++++|+
T Consensus 482 ------------~~~~~~-~~h~~~--v~~v~-fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 482 ------------VSEVKT-IVHPAE--ITSVA-FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp ------------EEEEEE-EECSSC--EEEEE-ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred ------------eeeeec-cCCCCc--eEEEE-ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence 011122 456654 99999 899999999999999999999987 666554 34599999999999
Q ss_pred CCCcEEEEEecCCeEEEeccCCCC--C-CCCCCc-hhhhhhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 327 PHIPMFATCGIEKTVKLWAPMPTD--F-PPLPDN-AEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 327 ~~~~~l~s~~~dg~i~iw~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
|++++||+++.|++|++|++..+. . ..+.+| ...+..+. +.+++. +++++.||+|++|+++
T Consensus 546 pdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~-fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTE-EEEEETTSCEEEEECC
T ss_pred CCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEE-EcCCCE-EEEecCCCCEEEEecc
Confidence 999999999999999999998754 2 345567 56666555 344555 9999999999999973
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.7e-48 Score=336.14 Aligned_cols=296 Identities=23% Similarity=0.390 Sum_probs=257.2
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
+.+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++.... +.+|...|.+++|+| ++++|++++.|+.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSS--DSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-hccCCCceEEEEEcC--CCCEEEEECCCCEE
Confidence 566788999999999999999999999999999999999988766544 579999999999999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
++||+.+++.. ..+.+|...|.+++|+|+++ +|++++.|+.|++||+++++....+.. |...|.++
T Consensus 90 ~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~~ 155 (312)
T 4ery_A 90 KIWDVSSGKCL--KTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPA-----------HSDPVSAV 155 (312)
T ss_dssp EEEETTTCCEE--EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECC-----------CSSCEEEE
T ss_pred EEEECCCCcEE--EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecC-----------CCCcEEEE
Confidence 99999887765 55788999999999999998 678999999999999999887666543 56679999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
+|+|++ .+|++++.|+.|++||+++++. .......+...+..++|+|++++|++++ |+.|++||
T Consensus 156 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 156 HFNRDG-SLIVSSSYDGLCRIWDTASGQC--------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTCCE--------------EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCce--------------eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999987 8999999999999999987652 2223345667899999999999999887 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
+.++ +....+.+|..........+..+++++|++|+.||.|++||+.+++.+..+.+|...|.+
T Consensus 221 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 221 YSKG----------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp TTTT----------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred CCCC----------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 9876 566677777665333444435578899999999999999999999999999999999999
Q ss_pred EeecCCCcEEEEEe--cCCeEEEeccC
Q 013644 323 LEPHPHIPMFATCG--IEKTVKLWAPM 347 (439)
Q Consensus 323 ~~~s~~~~~l~s~~--~dg~i~iw~~~ 347 (439)
++|+|++++|++++ .|++|++|+.+
T Consensus 285 ~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 285 TACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999987 69999999864
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-48 Score=343.25 Aligned_cols=292 Identities=16% Similarity=0.179 Sum_probs=235.5
Q ss_pred eeccccceEEEEECCCCCEEEEecC------CCeEEEEeCCCCcce---eeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSD------DKLVIFWDWKDRREK---FSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~------dg~i~iw~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
..+|+..|++++|+|||++||+|+. |+.|++|+..++... .....+|...|.+++|+| ++. +++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~-~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKG-ILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTE-EEEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCC-EEEEECC
Confidence 4579999999999999999999997 788999998776532 222347889999999998 765 5567889
Q ss_pred CcEEEEEcccCceee--eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMD--TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
|+|+|||+.+++... .....+|...|++++|+|+++ +|++++.|+.|++||+++++....+.. |..
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-----------h~~ 182 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNA-----------HSS 182 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECC-----------CSS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcC-----------CCC
Confidence 999999998776543 234557999999999999998 578999999999999999887776643 677
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CC
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DE 236 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~ 236 (439)
.|++++|+|++..++++++.|+.|++||+++++..... ....+...+.+++|+|++ .+|++++ |+
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-------------DFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-------------CCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-------------eeccccccccchhhhhcccceEEEeeccc
Confidence 89999999988778999999999999999987632211 124456789999999985 6788776 99
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-ceEEEeCCCCeEEEEecCCCceeEeecc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.|++||++++ +....+.+|... |.+++ |+|++ ++|++|+.|++|+|||+++++++..+ +
T Consensus 250 ~i~~wd~~~~----------------~~~~~~~~~~~~--v~~l~-~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~ 309 (357)
T 4g56_B 250 NVSLVNIKNP----------------DSAQTSAVHSQN--ITGLA-YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S 309 (357)
T ss_dssp CEEEEESSCG----------------GGCEEECCCSSC--EEEEE-ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C
T ss_pred ceeEEECCCC----------------cEeEEEecccee--EEEEE-EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C
Confidence 9999999876 567788888876 99999 79887 68999999999999999999887665 7
Q ss_pred cccceEEEeecC-CCcEEEEEecCCeEEEeccCCC
Q 013644 316 DRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 316 h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
|...|++++|+| ++++|++++.||+|++|++...
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999998 7899999999999999998643
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-48 Score=339.45 Aligned_cols=292 Identities=17% Similarity=0.159 Sum_probs=235.4
Q ss_pred eccccceEEEEECCCCCEEEEecCCCeEEEEeCCC----------CcceeeeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD----------RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
..|...|.+++|+|||++|++++ |+++++||... ..........|...|.+++|+| + ..|++|+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d-~~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--E-RGILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--T-TEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--C-CeEEEEECC
Confidence 45778899999999999999887 67788886321 0111111234667899999998 6 578899999
Q ss_pred CcEEEEEcccCceeee--EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 81 GQVRLGQIFEDGRMDT--KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
|+|+|||+.+++.... ..+.+|.+.|++++|+|+++ +|++|+.|++|++||+++++.+..+.. |..
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~-----------h~~ 170 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRA-----------HAA 170 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC-----------CSS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcC-----------cCC
Confidence 9999999988775433 33568999999999999998 688999999999999999988777654 677
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-CCEEEEec-CC
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYN-DE 236 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~-d~ 236 (439)
.|.+++|+|++..+|++++.|+.|++||+++++....+ ....+...+.+++|+|+ +++|++++ |+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-------------GCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-------------C----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeee-------------ecceeeccceeeeecCCCCcceEEeccCC
Confidence 89999999998778999999999999999987632211 11345567899999985 56788876 99
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-ceEEEeCCCCeEEEEecCCCceeEeecc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.|++||++++ +.+..+.+|... |.+++ |+|++ ++|++|+.|++|++||+.+++++ .+.+
T Consensus 238 ~v~~wd~~~~----------------~~~~~~~~h~~~--v~~v~-fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~ 297 (344)
T 4gqb_B 238 TVSLVDTKST----------------SCVLSSAVHSQC--VTGLV-FSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQA 297 (344)
T ss_dssp EEEEEESCC------------------CCEEEECCSSC--EEEEE-ECSSSSCCEEEEETTSCEEEECTTCCEEE-EECC
T ss_pred cEEEEECCCC----------------cEEEEEcCCCCC--EEEEE-EccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcC
Confidence 9999999877 677889999876 99999 89998 58999999999999999988765 5688
Q ss_pred cccceEEEeecCCCc-EEEEEecCCeEEEeccCCCCC
Q 013644 316 DRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 316 h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 351 (439)
|.+.|++++|+|+++ +|++++.||+|++|++.++.+
T Consensus 298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999999999999987 577999999999999976544
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-47 Score=359.77 Aligned_cols=325 Identities=23% Similarity=0.391 Sum_probs=279.0
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
.+.+..+.+|...|++++|+|++++|++++.|+.|++|+... + ....+.+|...|.+++|+| ++.+|++++.|++|
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~-~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTV 327 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C-EEEEECCCSSCEEEEEECT--TSSEEEEEETTSCE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-c-EEEEEecCCCCeEEEEECC--CCCEEEEEeCCCeE
Confidence 356778899999999999999999999999999999999643 3 3344679999999999999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
++|++... .. ..+.+|...|.+++|+|+++ .+++++.|+.|++||. +++....+.. |...|.++
T Consensus 328 ~~w~~~~~-~~--~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~~-----------~~~~v~~~ 391 (577)
T 2ymu_A 328 KLWNRNGQ-HL--QTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTG-----------HSSSVRGV 391 (577)
T ss_dssp EEEETTSC-EE--EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TCCEEEEEEC-----------CSSCEEEE
T ss_pred EEEeCCCC-ee--EEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEecC-----------CCCCeEEE
Confidence 99998543 33 45778999999999999998 6789999999999995 4455544433 56779999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
+|+|++ ++|++++.|+.|++||... + ....+..|...|.+++|+|++++|++++ |+.|++||
T Consensus 392 ~~s~dg-~~l~~~~~d~~v~~~~~~~-~---------------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 392 AFSPDG-QTIASASDDKTVKLWNRNG-Q---------------LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp EECTTS-SCEEEEETTSEEEEECTTC-C---------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EECCCC-CEEEEEeCCCEEEEEeCCC-C---------------EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999987 8999999999999999643 2 1223367889999999999999999886 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
... +....+.+|... +.+++ |+|++++|++++.|+.|++||. +++++..+.+|...|++
T Consensus 455 ~~~-----------------~~~~~~~~~~~~--v~~~~-~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~ 513 (577)
T 2ymu_A 455 RNG-----------------QLLQTLTGHSSS--VRGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 513 (577)
T ss_dssp TTS-----------------CEEEEEECCSSC--EEEEE-ECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred CCC-----------------CEEEEEcCCCCC--EEEEE-EcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEE
Confidence 653 356677888776 99999 8999999999999999999995 68899999999999999
Q ss_pred EeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 323 LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 323 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
++|+|++++||+++.||.|++||.....+..+.+|...+..+. +.+++.++++++.||.|++||
T Consensus 514 l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~-fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 514 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEE-ECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEE-EcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999987666677788888887766 566788999999999999996
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.4e-47 Score=329.64 Aligned_cols=294 Identities=16% Similarity=0.262 Sum_probs=245.7
Q ss_pred ccceeeeeeccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcc----eeeeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRRE----KFSYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+.+..+|++|.+.|++++|+|++ ++|++|+.|++|++|++..... ....+.+|...|.+++|+| ++.+|+++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--dg~~l~s~ 83 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA--DGAYALSA 83 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT--TSSEEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC--CCCEEEEE
Confidence 467788999999999999999965 8999999999999999865322 2344679999999999999 99999999
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
+.|++|++||+.+++.. ..+.+|...|.+++|+|++. +|++++.|++|++||++.. ....+.. |.
T Consensus 84 s~D~~v~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-~~~~~~~-----------h~ 148 (319)
T 3frx_A 84 SWDKTLRLWDVATGETY--QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-CLATLLG-----------HN 148 (319)
T ss_dssp ETTSEEEEEETTTTEEE--EEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-EEEEECC-----------CS
T ss_pred eCCCEEEEEECCCCCee--EEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEEEec-----------cC
Confidence 99999999999887765 55889999999999999998 6889999999999999743 3333322 66
Q ss_pred eeeEEEeecCCC-----CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 158 IRLNAIVIDPRN-----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 158 ~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
..+.++.+.|.. +..+++++.|+.|++||+++.+. ...+.+|...|.+++|+|++++|++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---------------EADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------------EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------------heeecCCCCcEEEEEEcCCCCEEEE
Confidence 779999999853 24899999999999999987542 2233678999999999999999999
Q ss_pred ec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE
Q 013644 233 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 311 (439)
Q Consensus 233 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 311 (439)
++ |+.|++||+.++ +....+..+. .+.+++ |+|++.+|++++. +.+++|++..+..+.
T Consensus 214 ~~~dg~i~iwd~~~~----------------~~~~~~~~~~---~v~~~~-~sp~~~~la~~~~-~~i~v~~~~~~~~~~ 272 (319)
T 3frx_A 214 AGKDGEIMLWNLAAK----------------KAMYTLSAQD---EVFSLA-FSPNRYWLAAATA-TGIKVFSLDPQYLVD 272 (319)
T ss_dssp EETTCEEEEEETTTT----------------EEEEEEECCS---CEEEEE-ECSSSSEEEEEET-TEEEEEEETTEEEEE
T ss_pred EeCCCeEEEEECCCC----------------cEEEEecCCC---cEEEEE-EcCCCCEEEEEcC-CCcEEEEeCcCeeee
Confidence 87 999999999876 4555565543 489999 8999999998876 459999999877766
Q ss_pred eec--------ccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 312 LMV--------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 312 ~~~--------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
.+. .|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 554 34567999999999999999999999999998653
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.7e-47 Score=331.21 Aligned_cols=297 Identities=18% Similarity=0.238 Sum_probs=239.6
Q ss_pred ccceeeeeeccccceEEEEE-----CC-CCCEEEEecCCCeEEEEeCCCCc------ceeeeecCCcccEEEEEEeecCC
Q 013644 3 RINLCGKLHGHKGCVNAVEF-----NS-TGDFLVSGSDDKLVIFWDWKDRR------EKFSYLSGHLDNIFQTRIMPFTD 70 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~-----s~-~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~ 70 (439)
.+++...|+||.+.|++++| ++ ++++|+||+.|++|++||+.... .....+.+|...|.+++|+| +
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~ 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ--E 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS--S
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC--C
Confidence 35567889999999999999 77 89999999999999999987543 23345679999999999999 9
Q ss_pred CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 71 DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 71 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
+.+|++++.|++|++||+++++.. ..+.+|...|.+++|+|+++ .|++++.|+.|++||+..... ... .
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~-~~~--~----- 156 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTY--KRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECK-FSS--A----- 156 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEE--EEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEE-EEC--C-----
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE--EEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCce-eee--e-----
Confidence 999999999999999999887765 55789999999999999998 577999999999999974321 111 1
Q ss_pred CCCCCceeeeEEEeecCCCC---------cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEE
Q 013644 151 SKQPMNSIRLNAIVIDPRNP---------NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
....|...|.+++|+|++. .+|++++.|+.|++||... + ....+..|...|.++
T Consensus 157 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---------------~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 157 -EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---------------IRYTFKAHESNVNHL 219 (343)
T ss_dssp -TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---------------EEEEEECCSSCEEEE
T ss_pred -cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---------------eeEEEcCccccceEE
Confidence 1112677899999999752 5899999999999999432 1 123346788999999
Q ss_pred EEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEE
Q 013644 222 AYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 300 (439)
Q Consensus 222 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~ 300 (439)
+|+|++++|++++ |+.|++||+.... .....+. +.. .+.+++ |+|++++++++ .|+.|+
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~---------------~~~~~~~-~~~--~v~~v~-~sp~~~~la~~-~d~~v~ 279 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLT---------------YPQREFD-AGS--TINQIA-FNPKLQWVAVG-TDQGVK 279 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCS---------------SCSEEEE-CSS--CEEEEE-ECSSSCEEEEE-ESSCEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCc---------------ccceeec-CCC--cEEEEE-ECCCCCEEEEE-CCCCEE
Confidence 9999999999987 9999999985431 1222332 222 389999 89999988765 577899
Q ss_pred EEecCCCceeE--eec-----------ccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 301 IWKKKGGKLVR--LMV-----------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 301 iwd~~~~~~~~--~~~-----------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+|++.+++... .+. +|...|.+++|+|++++|++|+.||.|++|++.++
T Consensus 280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99998776543 333 67788999999999999999999999999998643
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=326.99 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=248.8
Q ss_pred eecCCcccEEEEEEeec--CCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 52 YLSGHLDNIFQTRIMPF--TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
.+.+|.+.|++++|+|. .++.+|++|+.|++|++|++...+......+.+|...|.+++|+++++ ++++++.|++|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEE
Confidence 35689999999999872 136789999999999999998776555567899999999999999998 688999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
+||+.+++.+..+.. +...+.+++|+|++ .+|++|+.++.|++||+++++. ..
T Consensus 106 lWd~~~~~~~~~~~~-----------~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~---------------~~ 158 (321)
T 3ow8_A 106 LWDLENGKQIKSIDA-----------GPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKK---------------EY 158 (321)
T ss_dssp EEETTTTEEEEEEEC-----------CTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSE---------------EE
T ss_pred EEECCCCCEEEEEeC-----------CCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCce---------------eE
Confidence 999999987776654 34457889999987 8999999999999999987652 12
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
.+..+...+.+++|+|++++|++++ |+.|++||+.++ +....+.+|... |.+++ |+|+++
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----------------~~~~~~~~h~~~--v~~l~-~spd~~ 219 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG----------------KLLHTLEGHAMP--IRSLT-FSPDSQ 219 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSC--CCEEE-ECTTSC
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----------------cEEEEEcccCCc--eeEEE-EcCCCC
Confidence 2355677899999999999999987 999999999876 566778888776 89999 899999
Q ss_pred eEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhhcc
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ 367 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~ 367 (439)
+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+.+++. ..+.+|...+..+. +
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~-~ 298 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK-Y 298 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-E
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999987765 55667777776665 4
Q ss_pred ccCcceEEEeCCCcEEEEEEec
Q 013644 368 GREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 368 ~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
..++..+++++.||.|++|+.+
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEeCC
Confidence 5677789999999999999964
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-46 Score=332.20 Aligned_cols=304 Identities=21% Similarity=0.308 Sum_probs=243.9
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCc------------------ccEEEEEEeecCCCcE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL------------------DNIFQTRIMPFTDDRK 73 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~------------------~~v~~~~~~~~~~~~~ 73 (439)
+|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+ ..|. ..|.+++|+| ++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECT--TSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECC--CCCE
Confidence 6999999999999999999987 689999999988765543 3332 2499999999 9999
Q ss_pred EEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 74 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
|++|+.|++|++||+.+++.. ..+.+|...|.+++|+|+++ .|++++.|++|++||+++++....+.
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---------- 204 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS---------- 204 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE----------
T ss_pred EEEEcCCCeEEEEECCCCcEE--EEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEE----------
Confidence 999999999999999877655 55889999999999999998 57799999999999999988766554
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
+...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+.. ......+|...|.+++|+|++++|+++
T Consensus 205 --~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 205 --IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------ENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp --CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc--------cccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 3446899999995458999999999999999988764322110 011125688899999999999999998
Q ss_pred c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe
Q 013644 234 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 312 (439)
Q Consensus 234 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 312 (439)
+ |+.|++||+.......... ..........+.+|... |.+++ ++|++++|++|+.|+.|++||..+++++..
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~----~~~~~~~~~~~~~h~~~--v~~~~-~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSK----TPNSGTCEVTYIGHKDF--VLSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp ETTSEEEEEEC-------------------CEEEEEECCSSC--EEEEE-ECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eCCCEEEEEECCCCCCccccc----CCCCCcceEEEecccCc--EEEEE-ECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 7 9999999997653211100 00112334567778765 89999 899999999999999999999999999999
Q ss_pred ecccccceEEEeecC------CCcEEEEEecCCeEEEeccCCC
Q 013644 313 MVGDRHVVNQLEPHP------HIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 313 ~~~h~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+.+|...|.+++|++ ++++|++|+.||+|++|++...
T Consensus 348 l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999876 6889999999999999998643
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-46 Score=325.06 Aligned_cols=309 Identities=17% Similarity=0.173 Sum_probs=231.3
Q ss_pred CcccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeee-cC-CcccEEEEEEeecCCCcEEEEe
Q 013644 1 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYL-SG-HLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 1 ~~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~-~~-h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
|+.++++++|++|.++|++++|+|+ +||+|+.|++|++|++..+. .....+ .+ |...|.+++|+| ++++|+++
T Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~ 76 (330)
T 2hes_X 1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAG 76 (330)
T ss_dssp --CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEE
T ss_pred CcccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEE
Confidence 4678899999999999999999988 99999999999999998753 222333 34 999999999999 99999999
Q ss_pred cCCCcEEEEEcccCc-----eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCC
Q 013644 78 SADGQVRLGQIFEDG-----RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENS 151 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~ 151 (439)
+.|++|++|++.... ......+.+|...|.+++|+|+++ +|++++.|++|++||++.. .....+...
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~------ 149 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVL------ 149 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEE------
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEe------
Confidence 999999999985421 123456789999999999999998 6889999999999999543 221111111
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC--CCE
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SEL 229 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 229 (439)
..|...|.+++|+|++ .+|++|+.|+.|++||...+.. .....+.+|...|.+++|+|+ +.+
T Consensus 150 --~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 150 --QEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW-------------ECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp --CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred --ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe-------------eEEEEccCCCCcEEEEEecCCCCeeE
Confidence 1167789999999987 8999999999999999876421 122344788999999999998 677
Q ss_pred EEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeC-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC
Q 013644 230 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 230 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
|++++ |+.|++|++..+.... .........+.. |.. .|.+++ |+++ .+|++++.||.|++|+..++
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~--------~~~~~~~~~~~~~h~~--~v~~v~-~s~~-~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDD--------QQEWVCEAILPDVHKR--QVYNVA-WGFN-GLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTS--------CEEEEEEEECCSCCSS--CEEEEE-ECTT-SCEEEEETTSCEEEEEEETT
T ss_pred EEEEeCCCeEEEEEecCCCccc--------cceeEEeeeccccccc--ceEEEE-EcCC-CEEEEEeCCCEEEEEEcCCC
Confidence 88876 9999999987642110 000112223333 554 499999 6765 48999999999999999877
Q ss_pred c--eeE-eeccccc-ceEEEeecC--CCcEEEEEecCCeEEEeccCC
Q 013644 308 K--LVR-LMVGDRH-VVNQLEPHP--HIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 308 ~--~~~-~~~~h~~-~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+ ... .+.+|.. .|.+++|+| ++++||+|+.||+|++|++..
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4 333 3467876 899999999 688999999999999999864
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.2e-46 Score=348.94 Aligned_cols=328 Identities=23% Similarity=0.368 Sum_probs=278.3
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
.++++.+.+|...|.+++|+|++++|++++.|+.|++|+... +. ...+.+|...|.+++|+| ++..|++++.|+.|
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~-~~~~~~~~~~v~~v~~~~--d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL-LQTLTGHSSSVNGVAFRP--DGQTIASASDDKTV 286 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CE-EEEECCCSSCEEEEEECT--TSSEEEEEETTSCE
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE-EEEEecCCCCEEEEEEcC--CCCEEEEEeCCCEE
Confidence 346778899999999999999999999999999999999643 33 344679999999999999 99999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
++|+.. ++.. ..+.+|...|.+++|+|+++ .+++++.|+.|++||+..... ..+.. |...+.++
T Consensus 287 ~~w~~~-~~~~--~~~~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~~~~-~~~~~-----------~~~~v~~~ 350 (577)
T 2ymu_A 287 KLWNRN-GQLL--QTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQHL-QTLTG-----------HSSSVWGV 350 (577)
T ss_dssp EEEETT-SCEE--EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSCEE-EEECC-----------CSSCEEEE
T ss_pred EEEeCC-CcEE--EEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCee-EEEeC-----------CCCCEEEE
Confidence 999974 3333 55788999999999999998 678999999999999865432 22221 56679999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
+|+|++ .++++++.|+.+++||... + ....+..|...|.+++|+|++++|++++ |+.|++||
T Consensus 351 ~~s~~g-~~l~~~~~dg~v~~~~~~~-~---------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 351 AFSPDG-QTIASASDDKTVKLWNRNG-Q---------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp EECTTS-SEEEEEETTSEEEEEETTC-C---------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCC-CEEEEEeCCCEEEEEcCCC-C---------------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999987 8999999999999999643 2 1223367888999999999999999886 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEE
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
... +....+.+|... +.+++ |+|++++|++++.|+.|++||. +++.+..+.+|...|++
T Consensus 414 ~~~-----------------~~~~~~~~~~~~--v~~~~-~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 414 RNG-----------------QLLQTLTGHSSS--VWGVA-FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp TTC-----------------CEEEEEECCSSC--EEEEE-ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred CCC-----------------CEEEEecCCCCC--eEEEE-ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 643 356677888775 99999 8999999999999999999996 57888899999999999
Q ss_pred EeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 323 LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 323 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
++|+|++++|++++.|+.|++|+........+.+|...+..+. +.+++.++++++.||.|++|+...
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEE-ECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEE-EcCCCCEEEEEECcCEEEEEeCCC
Confidence 9999999999999999999999987665677777887776665 566788999999999999999643
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-46 Score=335.15 Aligned_cols=285 Identities=15% Similarity=0.251 Sum_probs=249.3
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
.+.+|..+|++++|+| ++.+|++|+.||+|++||+.+++.. ..+.+|...|.+++|+|+++ +|++|+.|++|++|
T Consensus 103 ~l~gh~~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLW 177 (410)
T ss_dssp EEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEE
T ss_pred eecccCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEE--EEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence 4579999999999999 9999999999999999999887765 55889999999999999998 68899999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
|+.+++.+..+.. |...|.+++|+|++ .+|++|+.|+.|++||++++.. ...+
T Consensus 178 d~~~~~~~~~~~~-----------h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~---------------~~~~ 230 (410)
T 1vyh_C 178 DFQGFECIRTMHG-----------HDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC---------------VKTF 230 (410)
T ss_dssp ETTSSCEEECCCC-----------CSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE---------------EEEE
T ss_pred eCCCCceeEEEcC-----------CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE---------------EEEE
Confidence 9998877665543 67789999999987 8999999999999999988652 1223
Q ss_pred cCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC----
Q 013644 212 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---- 286 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~---- 286 (439)
.+|...|.++.++|++.++++++ |+.|++||+.++ .....+.+|... +.++. |+|+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~-~~~~~~~~ 291 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----------------ECKAELREHRHV--VECIS-WAPESSYS 291 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSC--EEEEE-ECCSCGGG
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC----------------ceeeEecCCCce--EEEEE-EcCccccc
Confidence 67888999999999999999987 999999999876 456677788765 88998 7886
Q ss_pred ----------------CceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 287 ----------------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 287 ----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
+.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6789999999999999999999999999999999999999999999999999999999998766
Q ss_pred C-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 351 F-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
. ..+.+|...+..+. ++++...+++++.||+|++|++
T Consensus 372 ~~~~~~~h~~~v~~l~-~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 372 CMKTLNAHEHFVTSLD-FHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCEEEECCSSCEEEEE-ECSSSSCEEEEETTSEEEEEC-
T ss_pred eEEEEcCCCCcEEEEE-EcCCCCEEEEEeCCCcEEEEeC
Confidence 4 56667777776665 5667778999999999999986
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-45 Score=318.02 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=238.8
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
...+.+|.+.|++++|+| ++++|++++.||+|++||+.++... ..+..|..+|.+++|+|+++ +|++|+.|+.|+
T Consensus 6 ~~~~~~h~~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~ 80 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGKFIARKN-WIIVGSDDFRIR 80 (304)
T ss_dssp EEEEEEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEE--EEEECCSSCEEEEEEEGGGT-EEEEEETTSEEE
T ss_pred EEeecCCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCCcee--EEeeccCCcEEEEEEeCCCC-EEEEECCCCEEE
Confidence 445679999999999999 9999999999999999999887665 55778999999999999998 678999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
+||+.+++.+..+.. |...|.+++|+|++ .+|++|+.|+.|++||++++. ....
T Consensus 81 vwd~~~~~~~~~~~~-----------h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~--------------~~~~ 134 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEA-----------HPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNW--------------ALEQ 134 (304)
T ss_dssp EEETTTCCEEEEEEC-----------CSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTT--------------EEEE
T ss_pred EEECCCCcEEEEEeC-----------CCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCc--------------chhh
Confidence 999999988777654 67789999999987 899999999999999998753 2233
Q ss_pred cccCCCccEEEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEe-CCCCcceeeeEEeeC--
Q 013644 210 LIGKNNIHITGLAYSN-TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFG-- 284 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s-- 284 (439)
.+.+|...|.+++|+| ++.+|++++ |+.|++||+... .....+. ++... +..+. ++
T Consensus 135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~----------------~~~~~~~~~~~~~--v~~~~-~~~~ 195 (304)
T 2ynn_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS----------------TPNFTLTTGQERG--VNYVD-YYPL 195 (304)
T ss_dssp EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS----------------SCSEEEECCCTTC--EEEEE-ECCS
T ss_pred hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC----------------CccceeccCCcCc--EEEEE-EEEc
Confidence 4578899999999999 578888886 999999999765 2333333 33333 66666 45
Q ss_pred CCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhh
Q 013644 285 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK 363 (439)
Q Consensus 285 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~ 363 (439)
+++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.||+|++||+.++++ ..+..+...+..
T Consensus 196 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~ 275 (304)
T 2ynn_A 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (304)
T ss_dssp TTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEE
Confidence 4788999999999999999999999999999999999999999999999999999999999988775 555566666655
Q ss_pred hhccccCcc-eEEEeCCCcEEEEEEeccc
Q 013644 364 ANKQGREDH-SRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 364 ~~~~~~~~~-~~~~~s~dg~v~~w~~~~~ 391 (439)
....+.... .+++++.|| +.+|++.+.
T Consensus 276 ~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 276 IATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 554444444 466666554 677776553
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-44 Score=318.14 Aligned_cols=298 Identities=18% Similarity=0.280 Sum_probs=243.8
Q ss_pred cccceeeeeeccccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcc----eeeeecCCcccEEEEEEeecCCCcEEEE
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRRE----KFSYLSGHLDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s 76 (439)
+++++..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+. ....+.+|...|.+++|+| ++.+|++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEE
Confidence 356778899999999999999997 68999999999999999977543 2344679999999999999 9999999
Q ss_pred ecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 77 SSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 77 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
++.|+.|++|+....... .....+...+..+.+++++. .|++++.|+.+++||+.......... ..|
T Consensus 104 ~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~----------~~~ 170 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTT--RRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQD----------ESH 170 (340)
T ss_dssp EETTSEEEEEETTTTEEE--EEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECS----------SSC
T ss_pred EcccccceEEeeccccee--eeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEe----------ccc
Confidence 999999999999776655 34566778899999999998 57799999999999987654332211 115
Q ss_pred eeeeEEEeecCCCC-cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-
Q 013644 157 SIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 234 (439)
Q Consensus 157 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 234 (439)
...+..++|++++. .++++++.|+.|++||+++++. ...+.+|...|++++|+|++++|++++
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---------------KTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---------------eeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 67789999987643 4678999999999999988652 223367889999999999999999987
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
|+.|++||+.+. +....+..+. .+.++. ++|++.++ +++.|+.|++||++++..+..+.
T Consensus 236 Dg~i~iwd~~~~----------------~~~~~~~~~~---~v~~~~-~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~ 294 (340)
T 4aow_A 236 DGQAMLWDLNEG----------------KHLYTLDGGD---IINALC-FSPNRYWL-CAATGPSIKIWDLEGKIIVDELK 294 (340)
T ss_dssp TCEEEEEETTTT----------------EEEEEEECSS---CEEEEE-ECSSSSEE-EEEETTEEEEEETTTTEEEEEEC
T ss_pred CCeEEEEEeccC----------------ceeeeecCCc---eEEeee-cCCCCcee-eccCCCEEEEEECCCCeEEEecc
Confidence 999999999876 4555555543 388888 78877655 55678999999999887765543
Q ss_pred ---------ccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 315 ---------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 315 ---------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
+|...|++++|+|++++|++|+.||.|+||++.+|.
T Consensus 295 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 678899999999999999999999999999998764
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-46 Score=338.62 Aligned_cols=340 Identities=10% Similarity=0.131 Sum_probs=266.4
Q ss_pred cccceEEEEECCCCC-EEEEe----------cCCCeEEEEeCCCCcc--eeeeecCCcccEEEEEEeecCCCcEEEEecC
Q 013644 13 HKGCVNAVEFNSTGD-FLVSG----------SDDKLVIFWDWKDRRE--KFSYLSGHLDNIFQTRIMPFTDDRKIITSSA 79 (439)
Q Consensus 13 h~~~I~~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 79 (439)
+...|.+++|+|+|+ +|++| +.|+.|++|++.++.. ... ...|...|.+++|+| ++.+|++++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~v~~~~~s~--~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-SLQVDSKFNDLDWSH--NNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-CCCCSSCEEEEEECS--SSSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-EEecCCceEEEEECC--CCCeEEEEcc
Confidence 446799999999997 99999 8999999999988753 222 236889999999999 9999999999
Q ss_pred CCcEEEEEcccC--ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC------ceeeEEeeccCCCC
Q 013644 80 DGQVRLGQIFED--GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS------ATRLFYCSSFSENS 151 (439)
Q Consensus 80 dg~i~iw~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~ 151 (439)
||.|++|++.+. .......+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+.
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------- 159 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-------- 159 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--------
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc--------
Confidence 999999999872 1223466888999999999999844478899999999999999876 222110
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEE
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELL 230 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 230 (439)
....|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+.. .....+|...+.+++|+|++ .++
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY---------TSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC---------CCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec---------cccccccCCceEEEEECCCCCCEE
Confidence 11226778999999998668999999999999999998763322111 11112337889999999997 577
Q ss_pred EEec-CC---eEEEEEccCCCCCCCCCCCcccccccccceeEe-CCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEec
Q 013644 231 ISYN-DE---LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 231 ~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~ 304 (439)
++++ ++ .|++||++++. .....+. +|... +.+++ |+| ++++|++++.||.|++||+
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~---------------~~~~~~~~~~~~~--v~~~~-~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNAN---------------TPLQTLNQGHQKG--ILSLD-WCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTT---------------SCSBCCCSCCSSC--EEEEE-ECSSCSSCEEEEESSSEEEEECS
T ss_pred EEEECCCCCceEEEEeCCCCC---------------CCcEEeecCccCc--eeEEE-eCCCCCCeEEEEeCCCCEEEeeC
Confidence 7776 77 99999998752 2344555 66655 99999 788 9999999999999999999
Q ss_pred CCCceeEeecccccceEEEeecCCC-cEEEEEecCCeEEEeccCCCCCCCCC-C--------------------------
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLP-D-------------------------- 356 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~-~-------------------------- 356 (439)
.+++++..+.+|...|.+++|+|++ .+|++++.||.|++|++......... .
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 9999999999999999999999999 79999999999999999776542211 0
Q ss_pred ---------chhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 357 ---------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 357 ---------~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+...+. ...++.++.++++++.||.|++|++.++
T Consensus 373 ~~~~~~~~~~~~~~~-~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSP-AAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCCCCCSTTCCCSC-CCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccCCccccCCcc-ceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 111111 2224556778888888999999988764
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-45 Score=332.49 Aligned_cols=334 Identities=14% Similarity=0.158 Sum_probs=265.6
Q ss_pred eccccceEEEEECCCCC-EEEEecCCCeEEEEeC----CCCcc------eeeeecC----------CcccEEEEEEeecC
Q 013644 11 HGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDW----KDRRE------KFSYLSG----------HLDNIFQTRIMPFT 69 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~----~~~~~------~~~~~~~----------h~~~v~~~~~~~~~ 69 (439)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++. ... +.. |...|++++|+|
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-- 118 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAE-LRHPFALSASSGKTTNQVTCLAWSH-- 118 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEE-EECCCCCC------CBCEEEEEECT--
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccc-ccccccccccccCCCCceEEEEEcC--
Confidence 34669999999999999 9999999999999999 77762 222 222 678999999999
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
++++|++++.||.|++|+. +++.. ..+..|...|.+++|+|+++ .|++++.|+.|++||+.+++....+.......
T Consensus 119 ~~~~l~~~~~dg~i~i~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNK-TGALL--NVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp TSSEEEEEETTSCEEEEET-TSCEE--EEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCCEEEEEeCCCeEEEEeC-CCCee--eeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 9999999999999999993 44444 55788999999999999998 57799999999999999988776654322110
Q ss_pred CC----CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc
Q 013644 150 NS----KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN 225 (439)
Q Consensus 150 ~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 225 (439)
.. ........+.+++|+|+ ..+++++.++.|++||+++++. ......|...|.+++|+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---------------~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTP---------------TGKLIGHHGPISVLEFND 257 (425)
T ss_dssp -----------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSC---------------SEEECCCSSCEEEEEEET
T ss_pred cceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCce---------------eeeeccCCCceEEEEECC
Confidence 00 00001112788999986 4789999999999999987642 122356788999999999
Q ss_pred CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 226 TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 226 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
++++|++++ |+.|++||+.++ +....+..|... +.++. |+|++ ++++++.|+.|++||+
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~~--i~~~~-~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNG----------------NSQNCFYGHSQS--IVSAS-WVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSB----------------SCSEEECCCSSC--EEEEE-EETTT-EEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCCC----------------ccceEecCCCcc--EEEEE-ECCCC-EEEEEeCCCcEEEEEC
Confidence 999999887 999999999876 466777777765 89999 79999 9999999999999999
Q ss_pred CCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC---------------------CCCCCCchh--hh
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---------------------FPPLPDNAE--KI 361 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------~~~~~~~~~--~~ 361 (439)
.+++.+..+..|...|.+++|+|++++|++++.||.|++|++.+.+ ...+..|.. .+
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 9999999999999999999999999999999999999999997654 244445544 45
Q ss_pred hhhhccccCcceEEEeCCCcEEEEEEec
Q 013644 362 MKANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
.... +.++...+++++.||.+++|+++
T Consensus 398 ~~~~-~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLS-WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEE-ECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEE-ccCCCceEEEEecCceEEEEeec
Confidence 4444 55667788899999999999975
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-45 Score=325.10 Aligned_cols=325 Identities=12% Similarity=0.106 Sum_probs=229.7
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC------CCcEEEEEcccC
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA------DGQVRLGQIFED 91 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~ 91 (439)
..+.+.+++.++.+ +.+.....|++.... ...|...|++++|+| ||++|++++. |+.|++|+..++
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~~-----p~~H~~~V~~v~fSp--DG~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVTA-----PACMEVQIGAVRYRR--DGALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECS--SSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred cCCCCCccceEEec-CCCccccccCCCCCC-----cccccCCEEEEEECC--CCCEEEEEcCCCCccccCeEEEEECCCC
Confidence 34566666655554 445778999975432 247999999999999 9999999997 778999988765
Q ss_pred ceee--eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 92 GRMD--TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 92 ~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
.... .....+|...|.+++|+|++. +++++.||+|++||+.+++.......... .|...|.+++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~-------~h~~~V~~v~~spdg 151 (357)
T 4g56_B 81 APNESLCTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKY-------EHDDIVKTLSVFSDG 151 (357)
T ss_dssp --CGGGCSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEEC-------CCSSCEEEEEECSSS
T ss_pred CcceeEecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccC-------CCCCCEEEEEECCCC
Confidence 4321 123446888999999999985 44778899999999998875543322111 167789999999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEec-CCeEEEEEccCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGL 247 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~ 247 (439)
++|++|+.|+.|++||+++++. ...+..|...|.+++|+|++. ++++++ |+.|++||++++
T Consensus 152 -~~l~sgs~dg~v~iwd~~~~~~---------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~- 214 (357)
T 4g56_B 152 -TQAVSGGKDFSVKVWDLSQKAV---------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP- 214 (357)
T ss_dssp -SEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-
T ss_pred -CEEEEEeCCCeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-
Confidence 8999999999999999988653 223367889999999999874 566665 999999999876
Q ss_pred CCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC-CceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeec
Q 013644 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 326 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 326 (439)
+....+..+.....+.+++ |+|+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|+
T Consensus 215 ---------------~~~~~~~~~~~~~~v~~v~-~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 215 ---------------KPATRIDFCASDTIPTSVT-WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278 (357)
T ss_dssp ---------------SCBCBCCCTTCCSCEEEEE-ECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred ---------------ceeeeeeeccccccccchh-hhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence 3333333333334588999 7887 5688999999999999999999999999999999999999
Q ss_pred CCC-cEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 327 PHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 327 ~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
|++ ++||+++.|++|+|||+.++++....+|...|..+.+.+.++..+++++.||+|++|++++..
T Consensus 279 p~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 987 589999999999999999888766667888887777544578899999999999999997653
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=319.12 Aligned_cols=305 Identities=12% Similarity=0.076 Sum_probs=232.8
Q ss_pred EEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC---------ceeeeEEecCCCCceEE
Q 013644 38 VIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED---------GRMDTKRLGKHQGRVYK 108 (439)
Q Consensus 38 i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~~v~~ 108 (439)
.+.|++..... ..|...|.+++|+| +|.+|++++ |+++++||.... ..........+...|.+
T Consensus 16 ~r~w~~~~~~~-----~~~~~~v~~~~fs~--dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 87 (344)
T 4gqb_B 16 AREWNLPPNAP-----ACMERQLEAARYRS--DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD 87 (344)
T ss_dssp -------CCSC-----SSCCSEEEEEEECT--TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEE
T ss_pred ccccCCCCCCc-----ccccCCEEEEEECC--CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEE
Confidence 46777654432 35777899999999 999999887 678888863210 00001112235678999
Q ss_pred EEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc
Q 013644 109 LAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188 (439)
Q Consensus 109 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 188 (439)
++|+|++ .|++++.||+|++||+.+++........... |...|++++|+|++ ++|++|+.|+.|++||+.
T Consensus 88 ~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-------H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 88 LTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYE-------HDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEEC-------CSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred EEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccC-------CCCCEEEEEECCCC-CEEEEEeCCCeEEEEECC
Confidence 9999986 3669999999999999998876655432221 67889999999987 899999999999999999
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccce
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ 266 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
+++. ...+.+|...|.+++|+|++ .+|++++ |+.|++||++++ +...
T Consensus 158 ~~~~---------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----------------~~~~ 206 (344)
T 4gqb_B 158 QQVV---------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP----------------KPAS 206 (344)
T ss_dssp TTEE---------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS----------------SCEE
T ss_pred CCcE---------------EEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc----------------ceee
Confidence 8753 22347889999999999998 4677776 999999999876 3444
Q ss_pred eEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCC-cEEEEEecCCeEEEe
Q 013644 267 VYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLW 344 (439)
Q Consensus 267 ~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 344 (439)
.+..+.....+.+++ |+| ++++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++||+|+.|++|+||
T Consensus 207 ~~~~~~~~~~~~~~~-~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw 285 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLA-WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285 (344)
T ss_dssp ECC----CCCEEEEE-ECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred eeecceeeccceeee-ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence 444433334588888 666 56789999999999999999999999999999999999999998 589999999999999
Q ss_pred ccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 345 APMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
|+.++++..+.+|...|..+.+.......+++++.||+|++|+++++.
T Consensus 286 d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 286 DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999988877888988888777544455577899999999999998763
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-43 Score=313.55 Aligned_cols=304 Identities=18% Similarity=0.207 Sum_probs=254.0
Q ss_pred eeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
....|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+.. +.+|...|.+++|+| ++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-LDGHTGTIWSIDVDC--FTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-ECCCSSCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-hhhcCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 4567899999999999999999999999999999999998876655 578999999999999 9999999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-----CcEEEEEccCCCceeeEEeeccCCCCCCCCcee--
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-----GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI-- 158 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (439)
||+.+++.... +. +...|.+++|+|+++ .+++++.+ +.|++||+........+.............+..
T Consensus 101 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 101 WDVSNGQCVAT--WK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EETTTCCEEEE--EE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EECCCCcEEEE--ee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 99988876643 43 788999999999998 56688777 999999999876554443322211111111222
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
.+.+++|+|++ ++|++++.+|.|++||+++.. ........|...|.+++|+|++++|++++ |+.
T Consensus 177 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 241 (369)
T 3zwl_B 177 AATVAGWSTKG-KYIIAGHKDGKISKYDVSNNY--------------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241 (369)
T ss_dssp CEEEEEECGGG-CEEEEEETTSEEEEEETTTTT--------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCc--------------EeEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence 79999999987 799999999999999998732 22233466788999999999999999886 999
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC--------------eEEEEe
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG--------------HLFIWK 303 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg--------------~i~iwd 303 (439)
|++||+.++ +....+. +.. .+.+++ ++|+++++++++.++ .+++||
T Consensus 242 i~v~d~~~~----------------~~~~~~~-~~~--~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 242 SFLVDVSTL----------------QVLKKYE-TDC--PLNTAV-ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEETTTC----------------CEEEEEE-CSS--CEEEEE-ECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred EEEEECCCC----------------ceeeeec-CCC--CceeEE-ecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999876 4445555 332 388888 899999999999888 899999
Q ss_pred cCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
..+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 999999999999999999999999999999999999999999976543
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-44 Score=313.07 Aligned_cols=303 Identities=16% Similarity=0.186 Sum_probs=239.0
Q ss_pred eeeecCCcc-cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeE-EecCCCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 50 FSYLSGHLD-NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 50 ~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
...+.+|.. .|++++|+| ++++|++|+.|++|+||++.++...... ...+|...|.+++|+|+++ +|++++.|+.
T Consensus 8 ~~~~~~h~~~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D~~ 84 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDAT 84 (345)
T ss_dssp EEEECCSTTSCEEEEEECT--TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred eeeecCCCCCcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECCCc
Confidence 344678887 999999999 9999999999999999999876544322 3468999999999999998 6889999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
+++|++..+........ ..|...|.+++|+|++ ++|++|+.|+.|++||++.... ...
T Consensus 85 v~iw~~~~~~~~~~~~~---------~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~------------~~~ 142 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTL---------EGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDE------------YEC 142 (345)
T ss_dssp EEEEEECCC-EEEEEEE---------CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSC------------EEE
T ss_pred EEEEEccCCCeEEEEEc---------cCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCC------------eEE
Confidence 99999987653222111 1167789999999987 8999999999999999986531 112
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
...+..|...|.+++|+|++++|++++ |+.|++|+...+. ......+.+|... |.+++ |+|+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~--------------~~~~~~~~~h~~~--v~~l~-~sp~ 205 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD--------------WVCCATLEGHEST--VWSLA-FDPS 205 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE--------------EEEEEEECCCSSC--EEEEE-ECTT
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC--------------EEEEEEecCCCCc--eEEEE-ECCC
Confidence 233467889999999999999999987 9999999987641 1234567788765 99999 8999
Q ss_pred CceEEEeCCCCeEEEEecCCC---------------ceeEeecc-cccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 287 DEYVMSGSDCGHLFIWKKKGG---------------KLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
+++|++|+.|+.|++|+.... +++..+.+ |...|.+++|+|++.+|++++.|+.|++|+.....
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 999999999999999996321 23445554 78899999999999999999999999999987653
Q ss_pred CC----------CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 351 FP----------PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 351 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
.. ...+|...+..+.+.+..+..+++++.||+|++|++.+++..
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 21 124567777777755445568999999999999999888665
No 29
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-44 Score=326.12 Aligned_cols=305 Identities=12% Similarity=0.175 Sum_probs=230.2
Q ss_pred ccceeeeeeccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCccee-eeecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKF-SYLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
.+++.+...+|...|+||+|+| ++++||+|+.||.|+|||+.++.... ..+.+|.+.|++++|+|. ++.+|++++.|
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D 186 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSME 186 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCC
Confidence 4556677888999999999999 56799999999999999998775433 234689999999999983 57899999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
|+|++||+++...........+...+.+++|+|++. +|++|+.||.|++||++... +..+. .|...|
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~-~~~~~-----------~h~~~v 253 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE-LWNLR-----------MHKKKV 253 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB-CCCSB-----------CCSSCE
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce-eEEEe-----------cccceE
Confidence 999999997654433322334455688999999998 68899999999999987543 22222 267789
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 239 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~ 239 (439)
.+++|+|++..+|++|+.|+.|++||+++.+.... .....+|...|++++|+|++++|++++ |+.|+
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR 321 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEE
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccce------------EEEeeeccccccceeECCCCCeeEEEcCCCEEE
Confidence 99999999877999999999999999987653211 112256888999999999999999987 99999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCc----ceeeeEEeeCCCCceEEEe-----------C-CCCeEEEEe
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----QTVKGVNFFGPNDEYVMSG-----------S-DCGHLFIWK 303 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~s~~~~~l~~~-----------~-~dg~i~iwd 303 (439)
+||+.++. ....+..|... ..+.... ++|++.+++++ + .++.|++||
T Consensus 322 iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd 384 (435)
T 4e54_B 322 VYSASQWD----------------CPLGLIPHPHRHFQHLTPIKAA-WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384 (435)
T ss_dssp EEESSSSS----------------SEEEECCCCCCCCSSSCCCBCE-ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred EEECCCCc----------------cceEEecccccccccceeEEEE-EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence 99998762 22222222210 0112222 34444444443 2 346799999
Q ss_pred cCCCceeEeec-ccccceEEE-eecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 304 KKGGKLVRLMV-GDRHVVNQL-EPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 304 ~~~~~~~~~~~-~h~~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
..+++++..+. +|...|.++ +|+|+|++|++|+ |+.|+||+++.++.
T Consensus 385 ~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 385 GNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 99999988765 677888887 6999999999876 88999999988764
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-43 Score=315.75 Aligned_cols=300 Identities=13% Similarity=0.131 Sum_probs=240.0
Q ss_pred ccceeeeeeccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcceeeee-cCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKFSYL-SGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
.+++.+.+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++...... .+|...|.+++|+|. ++.+|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCC
Confidence 466788999999999999999999 999999999999999999877655432 379999999999982 35899999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
+.|++||+.............|...|.+++|+|+++ +|++++.|+.|++||++ ++....+.. |...|
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~-----------h~~~v 207 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKL-----------HKAKV 207 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEEC-----------SSSCE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEecc-----------CCCcE
Confidence 999999998643332222344558899999999998 68899999999999994 555555443 67789
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec-CCeE
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-DELV 238 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d~~i 238 (439)
.+++|+|++..+|++++.|+.|++||+++.+... ..... ..|...|.+++|+| ++++|++++ |+.|
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-----------SYIAE-MPHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-----------CEEEE-EECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-----------ceEEE-ecCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 9999999884499999999999999999743110 11111 25788999999999 999999887 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCC---------------cceeeeEEeeCCCCceEEEeCCCCeEEEEe
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---------------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 303 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd 303 (439)
++||+.++.. ...+.+|.. ...+..++ ++|++++ +|+.||.|++||
T Consensus 276 ~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 276 RVYSSYDWSK----------------PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG-RYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp EEEETTBTTS----------------CSEEEECCBCCCTTSCCCCCEECSSSSEEEEE-CBCCTTT--CTTCCCCEEEEE
T ss_pred EEEECCCCcc----------------ccccccccccccccccceEEeccCCCCceEEE-ecCCccc--ccCCCCeEEEEe
Confidence 9999987732 222322210 01244566 6888888 888999999999
Q ss_pred cCCCceeEeecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 304 KKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 304 ~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+.+++++..+.+ |...+..++|+|++++|++++ ||.|++|++++
T Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 337 ANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999999987 456788889999999999997 99999999864
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-43 Score=318.14 Aligned_cols=301 Identities=15% Similarity=0.140 Sum_probs=248.2
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc------ceeeeecCCcccEEEEEEeecCC----C--
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR------EKFSYLSGHLDNIFQTRIMPFTD----D-- 71 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~----~-- 71 (439)
+...+.+++|.+.|++++|+| ++|++|+.||.|++|++.++. .+.. +.+|...|.+++|+| + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~~g~~ 80 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS-HFVHKSGLHHVDVLQ--AIERDAFE 80 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE-EECCTTCEEEEEEEE--EEETTTEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE-EecCCCcEEEEEEec--ccccCCcc
Confidence 456778899999999999998 799999999999999999876 3444 569999999999999 8 8
Q ss_pred -cEEEEecCCCcEEEEEcccCce---eeeEEecCC-----CCceEEEEEc----cCCCcEEEEeCCCCcEEEEEccC---
Q 013644 72 -RKIITSSADGQVRLGQIFEDGR---MDTKRLGKH-----QGRVYKLAVE----PGSPYIIYSCGEDGFVQHFDLRS--- 135 (439)
Q Consensus 72 -~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~-----~~~v~~i~~~----~~~~~~l~s~~~dg~i~iwd~~~--- 135 (439)
.+|++++.|+.|++|++.+++. .....+..| ...|.+++|+ |+++.+|++++.||.|++||+++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 9999999999999999987764 112456777 5999999999 99984278999999999999998
Q ss_pred ---CCcee-----eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 136 ---DSATR-----LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 136 ---~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
++... .+..... ....|...+.+++|+|++ ++++++.|+.|++||+++++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~-------------- 220 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVE----SPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL-------------- 220 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEEC----CSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE--------------
T ss_pred ccccceeeccCcceeeeeec----cccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee--------------
Confidence 65554 3321000 001156779999999976 9999999999999999876532
Q ss_pred cccccC---C---CccEEEEEEccCCCEEEEec-C---CeEEEEEccCCCCCCCCCCCcccccccccceeEeC-------
Q 013644 208 RHLIGK---N---NIHITGLAYSNTSELLISYN-D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG------- 270 (439)
Q Consensus 208 ~~~~~~---~---~~~i~~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 270 (439)
..+.. | ...|.+++|+|++++|++++ | +.|++||+.++ +....+.+
T Consensus 221 -~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 221 -YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------ERIGSLSVPTHSSQA 283 (397)
T ss_dssp -EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------------CEEEEECBC------
T ss_pred -EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----------------cccceeccCcccccc
Confidence 12234 6 88899999999999999887 7 89999999876 45566666
Q ss_pred ------CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec------cc---------------ccceEEE
Q 013644 271 ------HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------GD---------------RHVVNQL 323 (439)
Q Consensus 271 ------~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h---------------~~~v~~~ 323 (439)
|... +.+++ |+|++++|++++.||.|++||+.+++++..+. +| ...|+++
T Consensus 284 ~~~~~~~~~~--v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 284 SLGEFAHSSW--VMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp --CCBSBSSC--EEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred cccccccCCc--EEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 6554 99999 89999999999999999999999999999998 88 8999999
Q ss_pred eecCCC----------cEEEEEecCCeEEEeccCCC
Q 013644 324 EPHPHI----------PMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 324 ~~s~~~----------~~l~s~~~dg~i~iw~~~~~ 349 (439)
+|+|++ ++|++++.||.|++|++.++
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999998 79999999999999999765
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-43 Score=310.49 Aligned_cols=289 Identities=14% Similarity=0.198 Sum_probs=242.9
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
...+.+|.+.|++++|+| ++++|++++.||+|++||+.++... ..+..|...|.+++|+|+++ ++++++.|+.|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~ 122 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGN-YVACGGLDNICS 122 (340)
T ss_dssp EEEECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEE--EEEECSSSCEEEEEECTTSS-EEEEEETTCEEE
T ss_pred heeecCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcc--eEeecCCccEEEEEECCCCC-EEEEEeCCCeEE
Confidence 345689999999999999 9999999999999999999887765 45778999999999999998 678999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
+|++.+.......... + ..|...+.++.|++++ .+++++.|+.|++||+.+++. ..
T Consensus 123 iw~~~~~~~~~~~~~~-~------~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~---------------~~ 178 (340)
T 1got_B 123 IYNLKTREGNVRVSRE-L------AGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ---------------TT 178 (340)
T ss_dssp EEETTTCSBSCEEEEE-E------ECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE---------------EE
T ss_pred EEECccCCCcceeEEE-e------cCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE---------------EE
Confidence 9999876432211111 0 1167789999999865 589999999999999988652 22
Q ss_pred cccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 210 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
.+.+|...|.+++|+|+++++++++ |+.|++||++++ .....+.+|... |.+++ |+|+++
T Consensus 179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----------------~~~~~~~~h~~~--v~~v~-~~p~~~ 239 (340)
T 1got_B 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----------------MCRQTFTGHESD--INAIC-FFPNGN 239 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------SEEEEECCCSSC--EEEEE-ECTTSS
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------eeEEEEcCCcCC--EEEEE-EcCCCC
Confidence 3367889999999999999999987 999999999876 566778888876 99999 899999
Q ss_pred eEEEeCCCCeEEEEecCCCceeEeecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhhhh
Q 013644 289 YVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 365 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~ 365 (439)
+|++|+.||.|++||+.+++.+..+.. +...|.+++|+|++++|++|+.||.|++||+..++. ..+.+|...+..+.
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 999999999999999999888777653 234799999999999999999999999999977654 56677877776665
Q ss_pred ccccCcceEEEeCCCcEEEEEE
Q 013644 366 KQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 366 ~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
+.+++..+++++.||.|++|+
T Consensus 320 -~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 320 -VTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -ECTTSSCEEEEETTSCEEEEC
T ss_pred -EcCCCCEEEEEcCCccEEecC
Confidence 466778999999999999996
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-42 Score=304.60 Aligned_cols=285 Identities=19% Similarity=0.242 Sum_probs=242.9
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee--e--cCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY--L--SGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
...+|.+.|++++|+|++++|++++ ||.|++|++.++...... + .+|...|.+++|+| ++++|++++.|+.|+
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLS 122 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEE
Confidence 3447999999999999999999999 999999999876533222 1 27899999999999 999999999999999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+|++.+++......+..|...|.+++|+|+++ ++++++.|+.|++||+++++....+.. |...+.+++
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~-----------~~~~i~~~~ 190 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQG-----------HTDGASCID 190 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC-----------CSSCEEEEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeec-----------ccCceEEEE
Confidence 99998877555566888999999999999998 577999999999999999877666543 566799999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEc
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEK 243 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~ 243 (439)
|+|++ .+|++++.|+.|++||+++++... . ..+...+.+++|+|+++++++++ ++.|++||+
T Consensus 191 ~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~--------------~--~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 191 ISNDG-TKLWTGGLDNTVRSWDLREGRQLQ--------------Q--HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ECTTS-SEEEEEETTSEEEEEETTTTEEEE--------------E--EECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ECCCC-CEEEEEecCCcEEEEECCCCceEe--------------e--ecCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 99987 899999999999999998865321 1 23567799999999999999886 999999999
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEE
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 323 (439)
.++ ....+..|... +.++. |+|++++|++++.||.|++|++.+++.+... .|...|.++
T Consensus 254 ~~~-----------------~~~~~~~~~~~--v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~ 312 (337)
T 1gxr_A 254 NKP-----------------DKYQLHLHESC--VLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSC 312 (337)
T ss_dssp TSS-----------------CEEEECCCSSC--EEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEE
T ss_pred CCC-----------------CeEEEcCCccc--eeEEE-ECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEE
Confidence 875 23455566654 99999 8999999999999999999999999887554 478899999
Q ss_pred eecCCCcEEEEEecCCeEEEecc
Q 013644 324 EPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
+|+|++++|++++.||.|++|++
T Consensus 313 ~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 313 DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999996
No 34
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.9e-43 Score=315.47 Aligned_cols=353 Identities=14% Similarity=0.184 Sum_probs=244.4
Q ss_pred ceeeeeeccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCcceeeee------------cCCcccEEEEEEeecCCC
Q 013644 5 NLCGKLHGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYL------------SGHLDNIFQTRIMPFTDD 71 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------------~~h~~~v~~~~~~~~~~~ 71 (439)
+....+++|.+.|++++|+| ++++|++|+.||.|++||+.++....... .+|...|.+++|+|. ++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 112 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DT 112 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CC
Confidence 45667889999999999999 99999999999999999998876544332 359999999999982 45
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCC--cEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSP--YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
.+|++++.||.|++||+.+++.... +. +...+.++.++|.+. .++++++.|+.|++||+++++....+..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----- 184 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADV--FN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG----- 184 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEE--EE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-----
T ss_pred cEEEEEeCCCeEEEeeCCCCcccee--cc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-----
Confidence 6899999999999999988766533 32 678899999998543 2688999999999999999887766643
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcc-cCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 228 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (439)
|...|.+++|+|++..+|++|+.||.|++||++.... ...+.................|...|.+++|+|+++
T Consensus 185 ------~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 185 ------HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp ------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred ------CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 5678999999999855799999999999999987652 111111111111122333467889999999999999
Q ss_pred EEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC---cceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 229 LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 229 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
+|++++ |+.|++||+.++... ..+..+.. ...+.... ....+..+++++.++.|++||+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENT----------------LVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBC----------------CCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEET
T ss_pred EEEEecCCCeEEEEECCCCccc----------------eeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEEC
Confidence 999886 999999999876321 11111110 00111111 3345566777788899999999
Q ss_pred CCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEE
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 384 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~ 384 (439)
.+++++..+.+|...|++++|+|++++|++++.||.|++|++...+........... ............+...|+.++
T Consensus 322 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 399 (408)
T 4a11_B 322 YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTS 399 (408)
T ss_dssp TTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------
T ss_pred cCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCcee
Confidence 999999999999999999999999999999999999999999887653222111111 111222333455677789999
Q ss_pred EEEeccc
Q 013644 385 VLRLQRR 391 (439)
Q Consensus 385 ~w~~~~~ 391 (439)
+|+.+..
T Consensus 400 ~W~~~~~ 406 (408)
T 4a11_B 400 AWSHPQF 406 (408)
T ss_dssp -------
T ss_pred ecCCccc
Confidence 9987654
No 35
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-44 Score=320.50 Aligned_cols=317 Identities=14% Similarity=0.209 Sum_probs=252.5
Q ss_pred eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCC
Q 013644 37 LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSP 116 (439)
Q Consensus 37 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 116 (439)
.+..|+...... ...+.+|.+.|++++|+| ++++|++|+.|++|++||+.+++.. ..+..|...|.+++|+|+++
T Consensus 47 ~~~~~~~~~~~~-~~~l~gH~~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 47 TAVSFNPTDLVC-CRTLQGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp GCCCCCCCCCEE-EEEECCCSSCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSS
T ss_pred cccccccceeEE-eecccccccEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCC
Confidence 344566555443 344689999999999999 9999999999999999999887665 55778999999999999998
Q ss_pred cEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCC
Q 013644 117 YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI 196 (439)
Q Consensus 117 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 196 (439)
+|++++.|+.+++|++.+...... ..........|...+.++.|.|+++..|++|+.|+.|++||+++++.+...
T Consensus 122 -~las~~~d~~v~iw~~~~~~~~~~----~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 122 -SVACGGLDSACSIFNLSSQADRDG----NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp -EEEECCSSSCCEEEECCCCSSCCC----SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred -EEEEeeCCCcEEEEECCCCccccC----CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 688999999999999976432110 000111123377889999999987678999999999999999987643211
Q ss_pred CCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc
Q 013644 197 SSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 274 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (439)
. .....+|...|.++.|++ ++.+|++++ |+.|++||++... .....+.+|...
T Consensus 197 ~----------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---------------~~~~~~~~h~~~ 251 (380)
T 3iz6_a 197 G----------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---------------RAVRTYHGHEGD 251 (380)
T ss_dssp C----------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---------------CCCEEECCCSSC
T ss_pred e----------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---------------cceEEECCcCCC
Confidence 1 112256888999999987 788888887 9999999997431 456778888876
Q ss_pred ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-------cceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 275 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------HVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 275 ~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
|.+++ |+|++++|++|+.||.|++||+.+++.+..+..+. ..|++++|+|+|++|++|+.||.|++||+.
T Consensus 252 --v~~v~-~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 252 --INSVK-FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp --CCEEE-ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred --eEEEE-EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 99999 89999999999999999999999999888776543 248999999999999999999999999987
Q ss_pred CCCC-CC----CCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 348 PTDF-PP----LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 348 ~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
.++. .. ..+|...+..+. +.+++..+++++.||++++|++...+
T Consensus 329 ~~~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 329 LAEMVLNLGTLQNSHEGRISCLG-LSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TCCEEEEECCSCSSCCCCCCEEE-ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCceEEEEecccCCCCCceEEEE-ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6653 11 245666666555 56678899999999999999997654
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-43 Score=337.34 Aligned_cols=295 Identities=17% Similarity=0.263 Sum_probs=240.7
Q ss_pred cceeeeeeccccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcc----eeeeecCCcccEEEEEEeecCCCcEEEEec
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRRE----KFSYLSGHLDNIFQTRIMPFTDDRKIITSS 78 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 78 (439)
+++...|++|.+.|++++|+|++ ++|+||+.|++|++|++.+... ....+.+|...|.+++|+| ++++|++|+
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs 449 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGS 449 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEe
Confidence 45566899999999999999865 7999999999999999976532 2344679999999999999 999999999
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.|++|++||+.++... ..+.+|...|.+++|+|+++ .|++++.|++|++||+.......... ....|..
T Consensus 450 ~Dg~v~vwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~--------~~~~h~~ 518 (694)
T 3dm0_A 450 WDGELRLWDLAAGVST--RRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISE--------GGEGHRD 518 (694)
T ss_dssp TTSEEEEEETTTTEEE--EEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECS--------STTSCSS
T ss_pred CCCcEEEEECCCCcce--eEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeecc--------CCCCCCC
Confidence 9999999999887665 55789999999999999998 47799999999999986543221111 1122677
Q ss_pred eeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC
Q 013644 159 RLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 236 (439)
Q Consensus 159 ~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~ 236 (439)
.|.+++|+|++ ...+++|+.|+.|++||+++.+. ...+.+|...|.+++|+|++++|++++ |+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 89999999975 25899999999999999987542 233467899999999999999999987 99
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
.|++||+.++ +.+..+..+ ..+.+++ |+|++.++++++ ++.|++||+.+++.+..+..+
T Consensus 584 ~i~iwd~~~~----------------~~~~~~~~~---~~v~~~~-~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 584 VVLLWDLAEG----------------KKLYSLEAN---SVIHALC-FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp BCEEEETTTT----------------EEEECCBCS---SCEEEEE-ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCC
T ss_pred eEEEEECCCC----------------ceEEEecCC---CcEEEEE-EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccc
Confidence 9999999876 333333332 2488888 899998888776 466999999999888766532
Q ss_pred c-------------------cceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 317 R-------------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 317 ~-------------------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
. ..+++++|+|++++|++|+.||.|++|++.
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1 137899999999999999999999999985
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.2e-43 Score=308.84 Aligned_cols=324 Identities=13% Similarity=0.109 Sum_probs=261.1
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
|.++|.+++|+|||++++++..++.+.+|........... .+|...|.+++|+| ++++|++++ ||.|++|++.+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCCC
Confidence 5688999999999999999888887777766555444443 48999999999999 999999999 9999999998765
Q ss_pred ee---eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 93 RM---DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 93 ~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
.. .......|...|.+++|+|+++ ++++++.|+.|++||+++++......... |...+.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTS---------SAPACYALAISPDS 153 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEEC---------SSSCEEEEEECTTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeeccc---------CCCceEEEEECCCC
Confidence 32 2222337899999999999998 67799999999999999887433222111 56679999999986
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 248 (439)
+++++++.++.|++||+++++. ...+..|...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 154 -~~l~~~~~dg~v~~~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-- 215 (337)
T 1gxr_A 154 -KVCFSCCSDGNIAVWDLHNQTL---------------VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-- 215 (337)
T ss_dssp -SEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--
T ss_pred -CEEEEEeCCCcEEEEeCCCCce---------------eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC--
Confidence 8999999999999999987652 222356788999999999999999886 999999999876
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
+....+. +.. .+.+++ |+|++++|++++.++.|++||+.+++.. .+..|...|.+++|+|+
T Consensus 216 --------------~~~~~~~-~~~--~v~~~~-~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 216 --------------RQLQQHD-FTS--QIFSLG-YCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC 276 (337)
T ss_dssp --------------EEEEEEE-CSS--CEEEEE-ECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTT
T ss_pred --------------ceEeeec-CCC--ceEEEE-ECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCC
Confidence 3333333 333 488898 8999999999999999999999987754 56789999999999999
Q ss_pred CcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 329 IPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
+++|++++.||.|++|++.+++......+...+.... +..++..+++++.||.+++|++
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD-ISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEE-ECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999998877643333444554444 4556778999999999999997
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.6e-43 Score=358.36 Aligned_cols=302 Identities=17% Similarity=0.236 Sum_probs=253.9
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++.+.. +.+|...|.+++|+| ++++|++++.|++|++||
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-IKAHEDEVLCCAFSS--DDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-eccCCCCEEEEEEec--CCCEEEEEeCCCeEEEEE
Confidence 46789999999999999999999999999999999999877665 479999999999999 999999999999999999
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCC-CcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGS-PYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
+.+++.. ..+.+|...|.+++|+|++ ..++++++.|+.|++||+++++....+.. |...|.+++|+
T Consensus 686 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-----------h~~~v~~~~~s 752 (1249)
T 3sfz_A 686 SATGKLV--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-----------HTNSVNHCRFS 752 (1249)
T ss_dssp TTTCCEE--EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-----------CSSCEEEEEEC
T ss_pred CCCCceE--EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-----------CCCCEEEEEEe
Confidence 9988766 5577899999999999953 23788999999999999999987766643 67789999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCC
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 246 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~ 246 (439)
|++ .++++++.||.|++||+.+++............. ...........+.+++|+|+++.+++++++.+.+|++.++
T Consensus 753 p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 753 PDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLS--SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp SST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred cCC-CEEEEEECCCeEEEEeCCCCcccceecccccccc--cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 987 8999999999999999998764332211110000 0001122345788999999999999999999999999876
Q ss_pred CCCCCCCCCcccccccccceeEe-CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee
Q 013644 247 LGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
.....+. +|... +.+++ |+|+++++++++.||.|++|++.++..+..+.+|...|.+++|
T Consensus 830 ----------------~~~~~~~~~~~~~--v~~~~-~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 830 ----------------GLLAEIHTGHHST--IQYCD-FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp ----------------CEEEEEECSSSSC--CCEEE-ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----------------CceeEEcCCCCCc--eEEEE-EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 3333443 55554 88888 8999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEecCCeEEEeccC
Q 013644 326 HPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 326 s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
+|++++|++++.||.|++|++.
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCCEEEEEeCCCeEEEEEcc
Confidence 9999999999999999999853
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.9e-42 Score=307.03 Aligned_cols=309 Identities=11% Similarity=0.075 Sum_probs=248.1
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-EEECCSSCEEEEEEET--TTTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-eecCCCCcccEEEEeC--CCCEEEEEcCCCeEEEE
Confidence 456699999999999999999999999999999998875 443 4578999999999999 99999999999999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
|+.+++......+..|...|.+++|+|+++ +|++++.|+.|++||++.+........... .|...|.+++|+
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~ 151 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKK-------PIRSTVLSLDWH 151 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECT-------TCCSCEEEEEEC
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeec-------ccCCCeeEEEEc
Confidence 998877665566678999999999999997 678999999999999998875333322211 156789999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCC---CCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD---TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
|++ .+|++++.|+.|++||++........... ...........+..|...|.+++|+|++++|++++ |+.|++||
T Consensus 152 ~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 PNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 987 89999999999999998643321110000 00001122233457888999999999999999886 99999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC--Cce-----------
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKL----------- 309 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~----------- 309 (439)
+.++ +....+..|... +.+++ |+|+++++++| .|+.|++|++.+ ++.
T Consensus 231 ~~~~----------------~~~~~~~~~~~~--v~~~~-~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 231 ADKK----------------MAVATLASETLP--LLAVT-FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp GGGT----------------TEEEEEECSSCC--EEEEE-EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred CCCC----------------ceeEEEccCCCC--eEEEE-EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9877 566777777665 89999 79999999988 899999999987 421
Q ss_pred ---------------------e------Eee-cccccceEEEeec-CCC---cEEEEEecCCeEEEeccCCC
Q 013644 310 ---------------------V------RLM-VGDRHVVNQLEPH-PHI---PMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 310 ---------------------~------~~~-~~h~~~v~~~~~s-~~~---~~l~s~~~dg~i~iw~~~~~ 349 (439)
. ..+ .+|...|++++|+ +++ ++|++++.||.|++|++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0 223 4899999999976 666 89999999999999998653
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.6e-43 Score=310.36 Aligned_cols=296 Identities=13% Similarity=0.176 Sum_probs=239.1
Q ss_pred eeeeeccccceEEEEECCCCCE-EEEecC---CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCC---CcEEEEecC
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDF-LVSGSD---DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD---DRKIITSSA 79 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~-l~t~~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~l~s~~~ 79 (439)
.+.+++|.+.|++++|+|++.. +++|+. |+.|++|++.+++.......+|...|.+++|+| + +.+|++++.
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTTTCCEEEEET
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCCCceEEEecC
Confidence 3456889999999999999954 556665 899999999988765554458999999999999 7 699999999
Q ss_pred CCcEEEEEcccCc-eeeeEEecCCCCceEEEEE------ccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCC
Q 013644 80 DGQVRLGQIFEDG-RMDTKRLGKHQGRVYKLAV------EPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENS 151 (439)
Q Consensus 80 dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~i~~------~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~ 151 (439)
||.|++|++.+++ .. ..+.+|...|.+++| +|+++ +|++++.|+.|++||+++++ ....+......
T Consensus 89 dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--- 162 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPV--YSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE--- 162 (357)
T ss_dssp TSCEEEECTTSCSSCS--EEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTS---
T ss_pred CCeEEEEeCCCCCccE--EEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCC---
Confidence 9999999998776 43 557899999999965 67887 67899999999999999887 44444332111
Q ss_pred CCCCceeeeEEEe----ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc--
Q 013644 152 KQPMNSIRLNAIV----IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-- 225 (439)
Q Consensus 152 ~~~~~~~~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 225 (439)
+...+.+++ |+|++ .++++++.|+.|++||+++++. .....+...|.+++|+|
T Consensus 163 ----~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 163 ----NKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMAL----------------RWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp ----CCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEE----------------EEEEECSSCEEEEEESCSS
T ss_pred ----CCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCce----------------eeecCCCCceEEEEcCCCC
Confidence 234678887 77876 8999999999999999998652 11245678899999999
Q ss_pred -CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE-----eCCCCcceeeeEEeeCCCCc-eEEEeCCCC
Q 013644 226 -TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTVKGVNFFGPNDE-YVMSGSDCG 297 (439)
Q Consensus 226 -~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~s~~~~-~l~~~~~dg 297 (439)
++.++++++ ++.|++||+.++ .....+ .+|... +.+++ |+|+++ +|++++.||
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~~~~~~~--v~~~~-~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQ----------------HPTKGFASVSEKAHKST--VWQVR-HLPQNRELFLTAGGAG 282 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEE----------------ETTTEEEEEEEECCSSC--EEEEE-EETTEEEEEEEEETTS
T ss_pred CCCCEEEEECCCCeEEEEeCcCC----------------CcccceeeeccCCCcCC--EEEEE-ECCCCCcEEEEEeCCC
Confidence 888888886 999999999875 233333 377665 99999 899998 899999999
Q ss_pred eEEEEecCCC-------------------ceeEeecccccceEEEeecCCCcEEE-EEecCCeEEEeccCCCC
Q 013644 298 HLFIWKKKGG-------------------KLVRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 298 ~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~ 350 (439)
.|++||+.++ +++..+.+|...|++++|+|++++|+ +++.||.|++|++...+
T Consensus 283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998754 45677889999999999999999988 89999999999997643
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-44 Score=322.55 Aligned_cols=298 Identities=13% Similarity=0.140 Sum_probs=247.0
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCC---CcceeeeecCCcccEEEEEEeecCC-CcEEEEecCCCcEEEEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD---RREKFSYLSGHLDNIFQTRIMPFTD-DRKIITSSADGQVRLGQ 87 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~ 87 (439)
.|...|++++|+|++++|++|+.||.|++|++.+ +......+.+|...|.+++|+| + +.+|++++.|+.|++||
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA--KQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS--SSTTBEEEECSSSCEEBCB
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC--CCCCEEEEEcCCCeEEEEE
Confidence 5889999999999999999999999999999987 2334455678999999999999 7 89999999999999999
Q ss_pred cccCc------eee-eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 88 IFEDG------RMD-TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 88 ~~~~~------~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
+.+.+ ... ......|...|.+++|+|++..+|++++.|+.|++||+++++....+..... ...|...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~v 217 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP-----NSGIKQQL 217 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC-----SSCCCCCE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc-----ccccCCce
Confidence 98775 221 1234679999999999999656889999999999999999877666543210 11136679
Q ss_pred EEEeecCCCCcEEEEeecCc---eEEEEeCcCCcccCCCCCCCCccccccccccc-CCCccEEEEEEcc-CCCEEEEec-
Q 013644 161 NAIVIDPRNPNYFAVGGSDE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSN-TSELLISYN- 234 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~- 234 (439)
.+++|+|++..++++++.++ .|++||++++. .+...+. .|...|.+++|+| ++++|++++
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--------------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--------------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--------------CCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence 99999999778999999998 99999999753 1122234 7888999999999 889888887
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-ceEEEeCCCCeEEEEecCCCceeEee
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
|+.|++||+.++ +....+.+|... +.+++ |+|++ ++|++++.||.|++|++.+++.....
T Consensus 284 dg~v~~wd~~~~----------------~~~~~~~~~~~~--v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 284 DNTVLLWNPESA----------------EQLSQFPARGNW--CFKTK-FAPEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp SSEEEEECSSSC----------------CEEEEEECSSSC--CCCEE-ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred CCCEEEeeCCCC----------------ccceeecCCCCc--eEEEE-ECCCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 999999999876 567778888765 89999 89999 89999999999999999876543322
Q ss_pred c-----------------------------------ccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 314 V-----------------------------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 314 ~-----------------------------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
. .|..++.+++|+|+|++|++++.|+.|+||++.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1 15678889999999999999999999999999764
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.3e-43 Score=332.25 Aligned_cols=349 Identities=13% Similarity=0.197 Sum_probs=276.7
Q ss_pred ceeeeeeccccc-eEEEEECC--CCCEEEEecCCCeEEEEeCCCC-------cceeeeecCCcccEEEEEEeecCCCcEE
Q 013644 5 NLCGKLHGHKGC-VNAVEFNS--TGDFLVSGSDDKLVIFWDWKDR-------REKFSYLSGHLDNIFQTRIMPFTDDRKI 74 (439)
Q Consensus 5 ~~~~~l~~h~~~-I~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~l 74 (439)
+....+.+|.+. |++++|+| ++++|++|+.||.|++||+.++ ......+..|...|.+++|+| ++++|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 131 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRL 131 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEE
Confidence 678889999999 99999999 9999999999999999999754 233444578999999999999 99999
Q ss_pred EEecCC----CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 75 ITSSAD----GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 75 ~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
++++.+ +.|.+|+ .++.. ..+.+|...|.+++|+|++++++++++.|+.|++||+.+++....+..
T Consensus 132 ~~~~~~~~~~~~v~~~d--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~------ 201 (615)
T 1pgu_A 132 CVVGEGRDNFGVFISWD--SGNSL--GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT------ 201 (615)
T ss_dssp EEEECCSSCSEEEEETT--TCCEE--EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS------
T ss_pred EEeccCCCCccEEEEEE--CCCcc--eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc------
Confidence 999987 6888888 34443 568899999999999999987788999999999999998877666543
Q ss_pred CCCCCcee---eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc---CCCccEEEEEEc
Q 013644 151 SKQPMNSI---RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG---KNNIHITGLAYS 224 (439)
Q Consensus 151 ~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~ 224 (439)
|.. .|.+++|+|+++++|++++.|+.|++||+++++.+.. +.. .|...|.+++|+
T Consensus 202 -----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 202 -----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp -----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEES
T ss_pred -----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE--------------ecccccccCCceEEEEEc
Confidence 455 7999999998238999999999999999988763221 112 677788888888
Q ss_pred cCCCEEEEec-CCeEEEEEccCCCCCCCCCCC------------------------------------------------
Q 013644 225 NTSELLISYN-DELVYLFEKNMGLGPSPLSLS------------------------------------------------ 255 (439)
Q Consensus 225 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~------------------------------------------------ 255 (439)
++++|++++ |+.|++||+.++.........
T Consensus 263 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 341 (615)
T 1pgu_A 263 -DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG 341 (615)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence 888877776 888888887644210000000
Q ss_pred -------------------------------------------------------cccccc-------------------
Q 013644 256 -------------------------------------------------------PEDLQK------------------- 261 (439)
Q Consensus 256 -------------------------------------------------------~~~~~~------------------- 261 (439)
.++...
T Consensus 342 v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp EEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred EEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 000000
Q ss_pred --------------------------------------------cccc------------eeEeCCCCcceeeeEEeeCC
Q 013644 262 --------------------------------------------REEP------------QVYSGHRNSQTVKGVNFFGP 285 (439)
Q Consensus 262 --------------------------------------------~~~~------------~~~~~~~~~~~v~~~~~~s~ 285 (439)
...+ ..+.+|.. .+.+++ |+|
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~-~s~ 498 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA--KPSYIS-ISP 498 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS--CEEEEE-ECT
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccC--ceEEEE-ECC
Confidence 0000 11222333 488899 899
Q ss_pred CCceEEEeCCCCeEEEEecCCCceeEeecc-cccceEEEeecC----------CCcEEEEEecCCeEEEeccCCC-C-CC
Q 013644 286 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHP----------HIPMFATCGIEKTVKLWAPMPT-D-FP 352 (439)
Q Consensus 286 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~----------~~~~l~s~~~dg~i~iw~~~~~-~-~~ 352 (439)
++++|++++.||.|++||+.+++++..+.+ |...|++++|+| ++++|++++.||.|++|++.++ + ..
T Consensus 499 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 499 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 999999999999999999999999999988 999999999999 9999999999999999999876 3 35
Q ss_pred CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 353 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
.+.+|...+..+. +..++. +++++.||.|++|++..
T Consensus 579 ~~~~h~~~v~~l~-~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 ALNAHKDGVNNLL-WETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTSSTTCEEEEE-EEETTE-EEEEETTSCEEEEEEC-
T ss_pred hhhcCccceEEEE-EcCCCC-eEEecCCceEEEEeeec
Confidence 6777888877776 455566 99999999999999865
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-42 Score=299.22 Aligned_cols=292 Identities=17% Similarity=0.206 Sum_probs=245.2
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
.+++.+.|++|.+.|++++| |++++|++|+.||.|++||+.++..... +..|...|.+++|+| ++.+|++++.|+.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV-VYTGQGFLNSVCYDS--EKELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE-EEECSSCEEEEEEET--TTTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE-eecCCccEEEEEECC--CCCEEEEecCCCe
Confidence 56788999999999999999 9999999999999999999987765544 568999999999999 9999999999999
Q ss_pred EEEEEcccCce-eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFEDGR-MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
|++|++..... .....+.+|...|.+++|. ++ ++++++.|+.|++|| .++....+.. |...+.
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~-----------~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQA-----------HNASVW 146 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEEC-----------CSSCEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEeccc-----------CCCcee
Confidence 99999876532 2235578899999999993 44 688999999999999 4444444433 567799
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
+++|.|..+.++++++.|+.|++||.... .......+...+.+++|+|++.+++++.++.|++|
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~ 210 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDKV----------------IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTEE----------------EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCce----------------EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEE
Confidence 99998844589999999999999994431 12222337889999999999995555569999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceE
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 321 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 321 (439)
|+.++ +....+.+|... +.+++ |+|++ .|++++.||.|++||+.+++++..+..|...|.
T Consensus 211 d~~~~----------------~~~~~~~~~~~~--i~~~~-~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 270 (313)
T 3odt_A 211 DMHTG----------------DVLRTYEGHESF--VYCIK-LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIW 270 (313)
T ss_dssp ETTTC----------------CEEEEEECCSSC--EEEEE-ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEE
T ss_pred ECCch----------------hhhhhhhcCCce--EEEEE-EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEE
Confidence 99876 566778888765 99999 89999 688999999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+++|+|+++ +++++.||.|++|++.+++.
T Consensus 271 ~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 271 SVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred EEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 999999998 56789999999999987665
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.6e-42 Score=297.53 Aligned_cols=289 Identities=13% Similarity=0.194 Sum_probs=236.0
Q ss_pred eeeecCCcccEEEEEEeecCCC-cEEEEecCCCcEEEEEcccCce---eeeEEecCCCCceEEEEEccCCCcEEEEeCCC
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDD-RKIITSSADGQVRLGQIFEDGR---MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED 125 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d 125 (439)
...+.+|.+.|++++|+| ++ ++|++|+.|++|++|++..... .....+.+|...|.+++|+|+++ +|++++.|
T Consensus 10 ~~~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D 86 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-YALSASWD 86 (319)
T ss_dssp EEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEETT
T ss_pred EEEEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-EEEEEeCC
Confidence 344689999999999998 55 7999999999999999865332 23456889999999999999998 67899999
Q ss_pred CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccc
Q 013644 126 GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 205 (439)
Q Consensus 126 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 205 (439)
++|++||+++++....+.. |...|.+++|+|++ .+|++|+.|+.|++||++...
T Consensus 87 ~~v~~wd~~~~~~~~~~~~-----------h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~-------------- 140 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVG-----------HKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQC-------------- 140 (319)
T ss_dssp SEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCE--------------
T ss_pred CEEEEEECCCCCeeEEEcc-----------CCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe--------------
Confidence 9999999999988776654 67789999999987 899999999999999987422
Q ss_pred cccccccCCCccEEEEEEccCC------CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceee
Q 013644 206 CPRHLIGKNNIHITGLAYSNTS------ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 278 (439)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (439)
...+.+|...|.++.+.|.. .++++++ |+.|++||+... +....+.+|... |.
T Consensus 141 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----------------~~~~~~~~h~~~--v~ 200 (319)
T 3frx_A 141 --LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF----------------QIEADFIGHNSN--IN 200 (319)
T ss_dssp --EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT----------------EEEEEECCCCSC--EE
T ss_pred --EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc----------------hhheeecCCCCc--EE
Confidence 22336788899999999854 4677776 999999999865 456677888776 99
Q ss_pred eEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CC----
Q 013644 279 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PP---- 353 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~---- 353 (439)
+++ |+|++++|++|+.||.|++||+.+++++..+..+ ..|.+++|+|++.+|++++. +.+++|++..+.. ..
T Consensus 201 ~~~-~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 201 TLT-ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp EEE-ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCC
T ss_pred EEE-EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcc
Confidence 999 8999999999999999999999999999888754 68999999999999988875 4699999876432 11
Q ss_pred CC----CchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 354 LP----DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 354 ~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+. .+...+..+ .+.+++..+++++.||.|++|++.+.
T Consensus 278 ~~~~~~~~~~~v~~~-~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 278 FAGYSKAAEPHAVSL-AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTCCGGGCCCEEEE-EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcCcceeEE-EECCCCCEEEEeecCceEEEEEEeec
Confidence 11 112223233 35678889999999999999999765
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-42 Score=335.76 Aligned_cols=370 Identities=10% Similarity=0.057 Sum_probs=256.2
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCccee----------eeecCCcccEEEEEEeecCC-Cc
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKF----------SYLSGHLDNIFQTRIMPFTD-DR 72 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~-~~ 72 (439)
.+++..+. |.+.|++++|+|++++|++|+.||.|++||+.++.... ..+.+|.+.|.+++|+| + +.
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp--~~~~ 165 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP--RDIG 165 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET--TEEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc--CCCC
Confidence 34566665 67899999999999999999999999999998875421 22467999999999999 6 47
Q ss_pred EEEEecCCCcEEEEEcccCceeeeEEecCC------------------CCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 73 KIITSSADGQVRLGQIFEDGRMDTKRLGKH------------------QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.|++|+.|+.| +||+++++... .+..| ...|++++|+|++. +|++++.|+.|++||++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQ--SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEE--EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred EEEEEeCCCcE-EEECCCCceEE--EEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence 89999999999 99998876553 34333 57899999999998 68899999999999999
Q ss_pred CCCceeeEEeeccCCCCC-----C--CCceeeeEEEeec----CCCCcEEEEeecC-----ceEEEEeC-----------
Q 013644 135 SDSATRLFYCSSFSENSK-----Q--PMNSIRLNAIVID----PRNPNYFAVGGSD-----EYARVYDI----------- 187 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-----~--~~~~~~v~~~~~~----~~~~~~l~~~~~d-----g~i~i~d~----------- 187 (439)
+++.+............. . ..+...|.+++|+ |+++.++++|+.+ ..+.+|++
T Consensus 242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~ 321 (902)
T 2oaj_A 242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY 321 (902)
T ss_dssp TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence 887654311100000000 0 0134467777774 3333455665444 25555552
Q ss_pred ------------------------------------------------------------cCCcccCCC-------CC-C
Q 013644 188 ------------------------------------------------------------RKCHWYSPI-------SS-D 199 (439)
Q Consensus 188 ------------------------------------------------------------~~~~~~~~~-------~~-~ 199 (439)
.++...... .. .
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~ 401 (902)
T 2oaj_A 322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR 401 (902)
T ss_dssp HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence 221100000 00 0
Q ss_pred CCccc------------------ccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 200 TPVDT------------------FCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 200 ~~~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
..+.. ......+.+|...+.+++|+|++++|++++ |++|++||+.++.....
T Consensus 402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--------- 472 (902)
T 2oaj_A 402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--------- 472 (902)
T ss_dssp TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------
T ss_pred CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------
Confidence 00000 000001223344445556678999999997 99999999987621000
Q ss_pred ccccce-eE-----eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc--------------------------
Q 013644 261 KREEPQ-VY-----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-------------------------- 308 (439)
Q Consensus 261 ~~~~~~-~~-----~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------------- 308 (439)
.... .+ .+|... |.+++ |+|++++||+|+.||+|++|++.+++
T Consensus 473 --~~~~~~l~~~~~~~h~~~--V~sva-fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 473 --ASFEVNLSRTLNKAKELA--VDKIS-FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp --BCEEEEHHHHTTCSSSCC--EEEEE-EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred --ceEEeechhhcCCCCCCc--eeEEE-ecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 0000 01 155544 99999 89999999999999999999987662
Q ss_pred -------------------eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC------CCCC-Cchhhhh
Q 013644 309 -------------------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF------PPLP-DNAEKIM 362 (439)
Q Consensus 309 -------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~-~~~~~~~ 362 (439)
++..+.+|.+.|++++|||+| +||+|+.|++|++||+.+..+ ..+. +|...|.
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~ 626 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVT 626 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEE
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceE
Confidence 467788999999999999999 999999999999999977643 2343 6777777
Q ss_pred hhhcc----ccC---cceEEEeCCCcEEEEEEe---cccceee
Q 013644 363 KANKQ----GRE---DHSRITLTPDVIMHVLRL---QRRQTLA 395 (439)
Q Consensus 363 ~~~~~----~~~---~~~~~~~s~dg~v~~w~~---~~~~~~~ 395 (439)
.+.+. ..+ +..+++++.||+|++|++ .+++...
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~ 669 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV 669 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE
Confidence 66643 033 479999999999999999 6666543
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-42 Score=303.34 Aligned_cols=286 Identities=16% Similarity=0.197 Sum_probs=241.3
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
...+.+|...|++++|+| ++.+|++|+.||+|++||..+.+.. ..+..|...|.+++|+|++. .+++++.|+.++
T Consensus 57 ~~~l~gH~~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~i~ 131 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKE--HAVTMPCTWVMACAYAPSGC-AIACGGLDNKCS 131 (354)
T ss_dssp EEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEE--EEEECSSSCCCEEEECTTSS-EEEEESTTSEEE
T ss_pred EEEecCCCCeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcc--eEEecCCCCEEEEEECCCCC-EEEEeeCCCCEE
Confidence 345689999999999999 9999999999999999999877665 44667889999999999998 688999999999
Q ss_pred EEEccCCCc------eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcc
Q 013644 130 HFDLRSDSA------TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 203 (439)
Q Consensus 130 iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 203 (439)
+|++..... ...+. .|...|.+++|+|++ ..|++++.|+.|++||+++++.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~----------- 188 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVA-----------MHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQL----------- 188 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEE-----------ECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE-----------
T ss_pred EEEEeccccccccccceeee-----------ccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeE-----------
Confidence 999875421 12222 167789999999987 7999999999999999988653
Q ss_pred cccccccccCCCccEEEEEEcc--CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeE
Q 013644 204 TFCPRHLIGKNNIHITGLAYSN--TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 280 (439)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 280 (439)
...+.+|...|.++.++| ++.+|++++ |+.|++||++++ +....+.+|... |.++
T Consensus 189 ----~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----------------~~~~~~~~h~~~--v~~v 246 (354)
T 2pbi_B 189 ----LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG----------------QCVQAFETHESD--VNSV 246 (354)
T ss_dssp ----EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSC--EEEE
T ss_pred ----EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEecCCCCC--eEEE
Confidence 223367888999999987 467888886 999999999877 566778888876 9999
Q ss_pred EeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc--cceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCc
Q 013644 281 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN 357 (439)
Q Consensus 281 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~ 357 (439)
+ |+|++++|++|+.|+.|++||+.+++.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.+++. ..+.+|
T Consensus 247 ~-~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h 325 (354)
T 2pbi_B 247 R-YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325 (354)
T ss_dssp E-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred E-EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC
Confidence 9 89999999999999999999999888777766443 4789999999999999999999999999977654 566778
Q ss_pred hhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 358 AEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
...+..+. +.+++..+++++.||+|++|+
T Consensus 326 ~~~v~~l~-~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLR-VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEE-ECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEE-ECCCCCEEEEEcCCCCEEecC
Confidence 87776665 566788999999999999995
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.7e-42 Score=336.61 Aligned_cols=296 Identities=16% Similarity=0.257 Sum_probs=254.1
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
++++.+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.++..+.. +.+|...|.+++|+| ++++|++++.||.
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-IQVTETPVRAGKFIA--RKNWIIVGSDDFR 78 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-EecCCCcEEEEEEeC--CCCEEEEEeCCCe
Confidence 5788999999999999999999999999999999999999998876655 468999999999999 9999999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
|++|++.+++.. ..+.+|...|.+++|+|+++ .|++++.||.|++||+.++. ....+.. |...|.
T Consensus 79 i~vw~~~~~~~~--~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----------~~~~v~ 144 (814)
T 3mkq_A 79 IRVFNYNTGEKV--VDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEG-----------HEHFVM 144 (814)
T ss_dssp EEEEETTTCCEE--EEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEEC-----------CSSCEE
T ss_pred EEEEECCCCcEE--EEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcC-----------CCCcEE
Confidence 999999888766 45778999999999999998 57799999999999999873 3333332 567799
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCEEEEec-CCeE
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN-DELV 238 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-d~~i 238 (439)
+++|+|.++..|++++.||.|++||+..+.. .......+...+..++|+| ++.++++++ ++.|
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 9999994448999999999999999987552 2222234457899999999 899999886 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 318 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 318 (439)
++||+.++ .....+.+|... +.+++ |+|++++|++++.||.|++||+.+++.+..+..|..
T Consensus 211 ~~~d~~~~----------------~~~~~~~~~~~~--v~~~~-~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 211 KIWDYQTK----------------SCVATLEGHMSN--VSFAV-FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (814)
T ss_dssp EEEETTTT----------------EEEEEEECCSSC--EEEEE-ECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS
T ss_pred EEEECCCC----------------cEEEEEcCCCCC--EEEEE-EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC
Confidence 99999876 566777888765 89999 899999999999999999999999999999999999
Q ss_pred ceEEEeecCCCcE-EEEEecCCeEEEeccCC
Q 013644 319 VVNQLEPHPHIPM-FATCGIEKTVKLWAPMP 348 (439)
Q Consensus 319 ~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 348 (439)
.+.+++|+|+++. +++++.++.+.+|++..
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred cEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 9999999999873 24445577788888754
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-42 Score=351.11 Aligned_cols=370 Identities=15% Similarity=0.201 Sum_probs=289.5
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+.+.+..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+.. +.+|...|.+++|+|..++.++++++.|+.
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT-YDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE-EcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 4567788999999999999999999999999999999999999876665 479999999999998444558999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC--------------
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS-------------- 148 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------- 148 (439)
|++||+.+++.. ..+.+|...|.+++|+|+++ ++++++.||.|++||+.+++....+......
T Consensus 725 v~vwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1249)
T 3sfz_A 725 LKLWDLNQKECR--NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801 (1249)
T ss_dssp EEEEETTSSSEE--EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred EEEEECCCcchh--heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence 999999888765 55789999999999999998 6889999999999999988665544321100
Q ss_pred ------CCC------------------------CCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCC
Q 013644 149 ------ENS------------------------KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS 198 (439)
Q Consensus 149 ------~~~------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 198 (439)
+.. ....|...+.+++|+|++ .++++++.++.|++||+.++..
T Consensus 802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~------ 874 (1249)
T 3sfz_A 802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLK------ 874 (1249)
T ss_dssp CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEE------
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce------
Confidence 000 001356678889999976 7899999999999999887542
Q ss_pred CCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccc-------------cccccc
Q 013644 199 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPED-------------LQKREE 264 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~ 264 (439)
.....+|...|.+++|+|+++++++++ |+.|++|++............... ......
T Consensus 875 ---------~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 875 ---------VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp ---------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred ---------eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 223367899999999999999998886 999999998653221111100000 000000
Q ss_pred ceeEeCCC------CcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecC
Q 013644 265 PQVYSGHR------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 265 ~~~~~~~~------~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 338 (439)
.....+.. ....+.+++ ++|+++++++|+.+|.|++|++.+++....+.+|...|++++|+|++++|++++.|
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~-~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCC-LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEE-ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred eEEEecCcceEEEcccCcEEEEE-EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC
Confidence 00111110 112378888 89999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 339 KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 339 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
|.|++|++.+++...+..|...+....+.. +..+++++.||.+++|++.+++...
T Consensus 1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~~ 1079 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVITGRIER 1079 (1249)
T ss_dssp SBEEEEETTTTEEECCBCCSSCEEEEEECS--SSEEEEEESSSEEEEEETTTTCCCE
T ss_pred CEEEEEECCCCceEEEecCCCcEEEEEEcC--CCcEEEEECCCcEEEEECCCCceeE
Confidence 999999999887766666776666555333 4568899999999999998876554
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=316.23 Aligned_cols=313 Identities=15% Similarity=0.248 Sum_probs=233.8
Q ss_pred cceeeee-eccccceEEEEECC-CCCEEEEecCCCeEEEEeCCC---Cccee-eeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 4 INLCGKL-HGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKD---RREKF-SYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 4 ~~~~~~l-~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~---~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+++..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +.... .....|...|.+++|+| ++.+|+++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEEEEE
Confidence 3567778 89999999999999 999999999999999999876 33221 11226999999999999 99999999
Q ss_pred cCCCcEEEEEcc---cCceeee--------EEecC--CCCceEEEE--EccCCCcEEEEeCCCCcEEEEEccCCCceeeE
Q 013644 78 SADGQVRLGQIF---EDGRMDT--------KRLGK--HQGRVYKLA--VEPGSPYIIYSCGEDGFVQHFDLRSDSATRLF 142 (439)
Q Consensus 78 ~~dg~i~iw~~~---~~~~~~~--------~~~~~--~~~~v~~i~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 142 (439)
+.||+|++||+. +++.... ..+.. +...+.++. +++++. ++++++.|+.|++||+++++....+
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 999999999995 3333211 11112 456667776 456776 6889999999999999999887777
Q ss_pred EeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEE
Q 013644 143 YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 222 (439)
.... |...|.+++|+|++ .+|++|+.||.|++||+++++.+ ......|...|.+++
T Consensus 209 ~~~~---------h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 209 ENSP---------RHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI--------------RSWSFGDHAPITHVE 264 (437)
T ss_dssp ECCG---------GGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE--------------EEEBCTTCEEEEEEE
T ss_pred ccCC---------CCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE--------------EEEecCCCCceEEEE
Confidence 6421 46679999999986 89999999999999999986522 222225677899996
Q ss_pred Ec----cCCCEEEEec-CCeEEEEEccCCCCCCCCCCCc-----ccc---cccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 223 YS----NTSELLISYN-DELVYLFEKNMGLGPSPLSLSP-----EDL---QKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 223 ~~----~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
|+ |++.+|++++ |+.|++||+.++.......... ... ...-....+.+......|.+++ |+ ++++
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~-~~-~~~~ 342 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS-VS-NDKI 342 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE-EE-TTEE
T ss_pred eccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE-EC-CceE
Confidence 65 5677899887 9999999998762110000000 000 0000000122211223488888 67 7799
Q ss_pred EEEeCCCCeEEEEecCCCceeEeecc-------------------------------------cccceEEEeecCC--Cc
Q 013644 290 VMSGSDCGHLFIWKKKGGKLVRLMVG-------------------------------------DRHVVNQLEPHPH--IP 330 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~~~~s~~--~~ 330 (439)
|++|+.||.|++||+.+++....+.+ |...|++++|+++ +.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~ 422 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP 422 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence 99999999999999999988777665 7889999999998 78
Q ss_pred EEEEEecCCeEEEec
Q 013644 331 MFATCGIEKTVKLWA 345 (439)
Q Consensus 331 ~l~s~~~dg~i~iw~ 345 (439)
+|++|+.||.|+||+
T Consensus 423 ~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEcCCceEEEeC
Confidence 999999999999995
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-42 Score=305.65 Aligned_cols=289 Identities=8% Similarity=0.035 Sum_probs=220.8
Q ss_pred ccceEEEEECCCCCEEEEecCCC-------eEEEEeCCCCccee---------eeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDK-------LVIFWDWKDRREKF---------SYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg-------~i~iw~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.-||++++|+|||++||+|+.+. .|++|++....... ..+.+|...+.++++. ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEEEE
Confidence 35899999999999999987543 59999987654211 1246788888887764 4566654
Q ss_pred -----------cCCCcEEEEEcccCceeee--EE-----ecCCCCceEEEEEccCCCcEE-EEeCCCCcEEEEEccCCCc
Q 013644 78 -----------SADGQVRLGQIFEDGRMDT--KR-----LGKHQGRVYKLAVEPGSPYII-YSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 78 -----------~~dg~i~iw~~~~~~~~~~--~~-----~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~ 138 (439)
+.|+.+++|++........ .. ...+...+.+++|+|||++++ ++++.|++|++||+++++.
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4578899999876543211 11 123445689999999999653 4566899999999999887
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
...+. |...|.+++|+|++ +++++++.+ .+++|+..+++. ........|...|
T Consensus 170 ~~~~~------------~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~v 222 (365)
T 4h5i_A 170 KFEIE------------TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSC-------------IARKTDFDKNWSL 222 (365)
T ss_dssp EEEEE------------CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCE-------------EEEECCCCTTEEE
T ss_pred EEEeC------------CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcc-------------eeeeecCCCCCCE
Confidence 76654 45669999999987 788888755 566666665442 1122335678889
Q ss_pred EEEEEccCCCEEEEec-CC----eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 219 TGLAYSNTSELLISYN-DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
.+++|+|+++++++++ ++ .+++|++.... ........+.+|... |++++ |+|+|++||+|
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~--V~~~~-~Spdg~~lasg 287 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGN------------TSVLRSKQVTNRFKG--ITSMD-VDMKGELAVLA 287 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE------------EEEEEEEEEESSCSC--EEEEE-ECTTSCEEEEE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccce------------ecceeeeeecCCCCC--eEeEE-ECCCCCceEEE
Confidence 9999999999998886 55 68888876541 111123456667665 99999 89999999999
Q ss_pred CCCCeEEEEecCCCceeEee-cccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 294 SDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 294 ~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+.|+.|+|||+++++++..+ .+|...|++++|+|||++|||||.|++|+||++..
T Consensus 288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999875 78999999999999999999999999999999854
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-42 Score=310.12 Aligned_cols=332 Identities=14% Similarity=0.198 Sum_probs=252.8
Q ss_pred ceeeeeeccccceEEEEECCCCCE----EEEecCCCeEEEEeCCCCcce----eeeecCCcccEEEEEEeecCCCcEEEE
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDF----LVSGSDDKLVIFWDWKDRREK----FSYLSGHLDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~----l~t~~~dg~i~iw~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s 76 (439)
.+...+.+|..+|..+.+..+.+. +.-.+.+ ...+|+....... ... .+|...|.+++|+| ++++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fsp--dg~~la~ 81 (393)
T 1erj_A 6 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTND-YYILYNPALPREIDVELHKS-LDHTSVVCCVKFSN--DGEYLAT 81 (393)
T ss_dssp CCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSS-CEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECT--TSSEEEE
T ss_pred CCccccccccccCCCccccCChhHCcHhHhccCCc-eEEEECCCCCcccCceeEEe-cCCCCEEEEEEECC--CCCEEEE
Confidence 444455667776655444333322 2233333 3457776554322 222 26999999999999 9999999
Q ss_pred ecCCCcEEEEEcccCceeeeEEecCCC------------------CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 77 SSADGQVRLGQIFEDGRMDTKRLGKHQ------------------GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 77 ~~~dg~i~iw~~~~~~~~~~~~~~~~~------------------~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
++ ++++++|++.+++... .+..|. ..|.+++|+|+++ +|++++.|+.|++||+.+++.
T Consensus 82 g~-~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~ 157 (393)
T 1erj_A 82 GC-NKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI 157 (393)
T ss_dssp EC-BSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE
T ss_pred Ec-CCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE
Confidence 76 6899999998877653 233332 2499999999998 678999999999999999877
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
...+.. |...|.+++|+|++ .+|++++.|+.|++||+++++... . ..+...+
T Consensus 158 ~~~~~~-----------h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~--------------~--~~~~~~v 209 (393)
T 1erj_A 158 VMILQG-----------HEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL--------------T--LSIEDGV 209 (393)
T ss_dssp EEEECC-----------CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE--------------E--EECSSCE
T ss_pred EEEEcc-----------CCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE--------------E--EEcCCCc
Confidence 666543 67789999999987 899999999999999998865211 1 1245679
Q ss_pred EEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE-------eCCCCcceeeeEEeeCCCCce
Q 013644 219 TGLAYSN-TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-------SGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 219 ~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~s~~~~~ 289 (439)
.+++|+| ++++|++++ |+.|++||+.++ .....+ .+|... |.+++ |+|++++
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~----------------~~~~~~~~~~~~~~~h~~~--v~~v~-~~~~g~~ 270 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETG----------------FLVERLDSENESGTGHKDS--VYSVV-FTRDGQS 270 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTC----------------CEEEEEC------CCCSSC--EEEEE-ECTTSSE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------cEEEeecccccCCCCCCCC--EEEEE-ECCCCCE
Confidence 9999999 889999887 999999999876 222222 455554 99999 8999999
Q ss_pred EEEeCCCCeEEEEecCCC------------ceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCC
Q 013644 290 VMSGSDCGHLFIWKKKGG------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD 356 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~ 356 (439)
|++|+.|+.|++||+.+. .+...+.+|...|.+++|+|++++|++++.|+.|++||+.+++. ..+.+
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 999999999999998753 34567789999999999999999999999999999999988765 55667
Q ss_pred chhhhhhhhccc-----cCcceEEEeCCCcEEEEEEeccc
Q 013644 357 NAEKIMKANKQG-----REDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 357 ~~~~~~~~~~~~-----~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
|...+..+.+.. ++...+++++.||+|++|++++.
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 777776655432 35678999999999999998754
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-42 Score=299.27 Aligned_cols=295 Identities=14% Similarity=0.168 Sum_probs=222.6
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe-cC-CCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL-GK-HQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
...+.+|...|++++|+| + +|++|+.|++|++|++..+.......+ .+ |...|.+++|+|+++ +|++++.|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~ 81 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDST 81 (330)
T ss_dssp EEEEECCSSCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSC
T ss_pred ceeeccCCCceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCc
Confidence 344679999999999997 5 999999999999999987543333334 34 999999999999997 6889999999
Q ss_pred EEEEEccCCC-------ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCC
Q 013644 128 VQHFDLRSDS-------ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 200 (439)
Q Consensus 128 i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 200 (439)
|++||+.... ....+. .|...|.+++|+|++ ++|++|+.|+.|++||++....
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~-----------~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~-------- 141 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIE-----------GHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGE-------- 141 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC---------------CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCC--------
T ss_pred EEEEEcccCcCccccceeEEEEc-----------CCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCC--------
Confidence 9999986432 111221 277889999999987 8999999999999999954210
Q ss_pred CcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeee
Q 013644 201 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 279 (439)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (439)
.......+.+|...|.+++|+|++.+|++++ |+.|++||...+ .......+.+|... |.+
T Consensus 142 ---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--------------~~~~~~~~~~h~~~--v~~ 202 (330)
T 2hes_X 142 ---EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--------------DWECVAVLNGHEGT--VWS 202 (330)
T ss_dssp ---CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------EEEEEEEECCCSSC--EEE
T ss_pred ---CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--------------CeeEEEEccCCCCc--EEE
Confidence 0112234467899999999999999999997 999999998653 11345677888876 999
Q ss_pred EEeeCCC--CceEEEeCCCCeEEEEecCCC--------ceeEeecc-cccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 280 VNFFGPN--DEYVMSGSDCGHLFIWKKKGG--------KLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 280 ~~~~s~~--~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+. |+|+ +.+|++|+.|+.|++|++.++ .+...+.+ |...|.+++|++++ +|++++.||.|++|+..+
T Consensus 203 ~~-~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 203 SD-FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EE-ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred EE-ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 99 7998 678999999999999998765 34455555 88999999999765 899999999999999876
Q ss_pred CCC----CCCCCchh-hhhhhhcccc-CcceEEEeCCCcEEEEEEecc
Q 013644 349 TDF----PPLPDNAE-KIMKANKQGR-EDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 349 ~~~----~~~~~~~~-~~~~~~~~~~-~~~~~~~~s~dg~v~~w~~~~ 390 (439)
++. ....+|.. .+..+.+... +...+++++.||.|++|++++
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 531 12234544 4444443332 466899999999999999864
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.3e-42 Score=305.19 Aligned_cols=323 Identities=10% Similarity=0.135 Sum_probs=243.9
Q ss_pred cceeee-eeccccceEEEEECCC----CCEEEEecCCCeEEEEeCCCCcceeeee----cCCcccEEEEEEeecCC----
Q 013644 4 INLCGK-LHGHKGCVNAVEFNST----GDFLVSGSDDKLVIFWDWKDRREKFSYL----SGHLDNIFQTRIMPFTD---- 70 (439)
Q Consensus 4 ~~~~~~-l~~h~~~I~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~---- 70 (439)
++.... +.+|.++|++++|+|+ ...+++++.++.|++|++.+++.+..+. ..|...|++++|+| +
T Consensus 7 ~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~ 84 (366)
T 3k26_A 7 FKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTS 84 (366)
T ss_dssp CEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTC
T ss_pred EEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCC
Confidence 344334 4489999999999984 4456666667799999998776544321 13668899999999 7
Q ss_pred CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc-CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 71 DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 71 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
+.+|++++.||.|++||+.+++.. ..+.+|...|.+++|+| ++. +|++++.||.|++||+++++....+...
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---- 157 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCI--KHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGV---- 157 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEE--EEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECST----
T ss_pred CCEEEEecCCCEEEEEEchhceEe--eeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEeccc----
Confidence 679999999999999999887765 45778999999999999 665 7889999999999999988766655210
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCC-------------CCCcccccccccccCCCc
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------------DTPVDTFCPRHLIGKNNI 216 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 216 (439)
..|...|.+++|+|++ .+|++++.||.|++||+++++....+.. ...............|..
T Consensus 158 ----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 ----EGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ----TSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ----ccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 1167789999999987 8999999999999999997653321100 000000011112234888
Q ss_pred cEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC--CceEEEe
Q 013644 217 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSG 293 (439)
Q Consensus 217 ~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~--~~~l~~~ 293 (439)
.|.+++|+ ++++++++ |+.|++||+.+......... ...........+..|... +.+++ |+|+ +++|++|
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--v~~~~-~s~~~~~~~l~~~ 305 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCD--IWYMR-FSMDFWQKMLALG 305 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCC--SSCCC-CEECTTSSEEEEE
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc--cCCcchheeccccccCCc--EEEEE-EcCCCCCcEEEEE
Confidence 99999999 66787776 99999999987632211100 001112335666777765 88888 7888 9999999
Q ss_pred CCCCeEEEEecCCCce----eEeeccc--ccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 294 SDCGHLFIWKKKGGKL----VRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 294 ~~dg~i~iwd~~~~~~----~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
+.||.|++||+.++++ ...+.+| ...|++++|+|++++|++++.||.|++|++.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999998764 3477777 6899999999999999999999999999985
No 54
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-42 Score=335.94 Aligned_cols=369 Identities=10% Similarity=0.047 Sum_probs=254.4
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
.|..+|++++|+| |++|++++.|++|++||+.+++.+..+ .|...|++++|+| ++++|++|+.||+|++||+.++
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV--FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE--ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE--cCCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCC
Confidence 4788999999999 889999999999999999998776654 3678999999999 9999999999999999999876
Q ss_pred ceeee---------EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC--CC-----CCCCC
Q 013644 92 GRMDT---------KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS--EN-----SKQPM 155 (439)
Q Consensus 92 ~~~~~---------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~-----~~~~~ 155 (439)
..... ..+.+|.+.|.+++|+|++..++++|+.|+.| +||+++++....+...... +. .....
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 54311 12467899999999999765578899999999 9999998877665432100 00 01122
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCC--CC---CCCCcccccccccccCCCccEEEEEEc----cC
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP--IS---SDTPVDTFCPRHLIGKNNIHITGLAYS----NT 226 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 226 (439)
|...|.+++|+|++ .+|++|+.||.|++||+++++.+.. +. ...+.... + .-...+...|.+++|+ |+
T Consensus 210 h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~-~-~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 210 RTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDY-I-RDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp BCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTC-C-CCCSSCCCEEEEEEEEECSSTT
T ss_pred cCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcC-C-CCCccccCCeeEEEEEecCCCC
Confidence 45779999999987 8999999999999999988765321 10 00000000 0 0000123456666664 22
Q ss_pred C-CEEEEec-C-----CeEEEEE---------------------------------------------------------
Q 013644 227 S-ELLISYN-D-----ELVYLFE--------------------------------------------------------- 242 (439)
Q Consensus 227 ~-~~l~~~~-d-----~~i~i~d--------------------------------------------------------- 242 (439)
+ .+|++++ + ..+.+|+
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 2 3444443 2 1455555
Q ss_pred --------------ccCCCCCCCC-CCCc------cccc------------------ccccceeEeCCCCcceeeeEEee
Q 013644 243 --------------KNMGLGPSPL-SLSP------EDLQ------------------KREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 243 --------------~~~~~~~~~~-~~~~------~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
+.++...... .... .... .......+.+|... +.+++ |
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~--v~sv~-~ 443 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRT--KRQKL-P 443 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCC--CCCCC-C
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCC--CCccc-c
Confidence 3221100000 0000 0000 00001112333322 44556 6
Q ss_pred CCCCceEEEeCCCCeEEEEecCCCcee--Eee----c-----ccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC--
Q 013644 284 GPNDEYVMSGSDCGHLFIWKKKGGKLV--RLM----V-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-- 350 (439)
Q Consensus 284 s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~----~-----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-- 350 (439)
+|++++|++|+.|++|++||+.++... ..+ . +|...|++++|+|++++||+|+.||+|+||++.+++
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 899999999999999999999887532 111 1 788999999999999999999999999999997653
Q ss_pred --------------------------------------------CCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEE
Q 013644 351 --------------------------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 386 (439)
Q Consensus 351 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w 386 (439)
...+.+|...|..+. +++++ ++++++.|++|++|
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva-fSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN-NSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE-ECBTS-EEEEEETTSEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE-ecCCc-EEEEEeCCCcEEEE
Confidence 123445777776666 56777 99999999999999
Q ss_pred Eeccccee
Q 013644 387 RLQRRQTL 394 (439)
Q Consensus 387 ~~~~~~~~ 394 (439)
|+++....
T Consensus 602 d~~~~~~~ 609 (902)
T 2oaj_A 602 DRRGPAII 609 (902)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 98776543
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-41 Score=294.31 Aligned_cols=290 Identities=16% Similarity=0.266 Sum_probs=239.4
Q ss_pred eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 49 KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 49 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
+...+.+|...|++++|+| ++++|++++.||.|++|++.+++.. ..+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i 89 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSN-LLVSASDDKTL 89 (312)
T ss_dssp EEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred eEEEEcccCCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccc--hhhccCCCceEEEEEcCCCC-EEEEECCCCEE
Confidence 3445679999999999999 9999999999999999999877665 45789999999999999998 67899999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
++||+++++....+.. |...|.+++|+|++ ++|++|+.|+.|++||+++++. .
T Consensus 90 ~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~---------------~ 142 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKG-----------HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKC---------------L 142 (312)
T ss_dssp EEEETTTCCEEEEEEC-----------CSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE---------------E
T ss_pred EEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEE---------------E
Confidence 9999999987776654 56779999999987 8999999999999999987652 1
Q ss_pred ccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
..+..|...|.+++|+|++++|++++ |+.|++||+.++ +....+..+.. ..+..++ |+|++
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------------~~~~~~~~~~~-~~~~~~~-~~~~~ 204 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG----------------QCLKTLIDDDN-PPVSFVK-FSPNG 204 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------CEEEEECCSSC-CCEEEEE-ECTTS
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceeeEEeccCC-CceEEEE-ECCCC
Confidence 22356788999999999999999887 999999999876 33333332222 2477888 89999
Q ss_pred ceEEEeCCCCeEEEEecCCCceeEeecccccceEE---EeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhh
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ---LEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK 363 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~---~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~ 363 (439)
++|++++.||.|++||+.+++++..+.+|...+.+ ....+++.+|++++.||.|++|++.+++. ..+.+|...+..
T Consensus 205 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 99999999999999999999999999988764332 23346788999999999999999988775 567778777766
Q ss_pred hhccccCcceEEEeC--CCcEEEEEEec
Q 013644 364 ANKQGREDHSRITLT--PDVIMHVLRLQ 389 (439)
Q Consensus 364 ~~~~~~~~~~~~~~s--~dg~v~~w~~~ 389 (439)
.. ++++...+++++ .|+.|++|+..
T Consensus 285 ~~-~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 285 TA-CHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EE-ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred Ee-ecCcCCceEEEEccCCccEEEecCC
Confidence 65 455566677664 79999999864
No 56
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.7e-41 Score=295.70 Aligned_cols=293 Identities=17% Similarity=0.253 Sum_probs=231.4
Q ss_pred eeeecCCcccEEEEEE-----eecCCCcEEEEecCCCcEEEEEcccCc-----eeeeEEecCCCCceEEEEEccCCCcEE
Q 013644 50 FSYLSGHLDNIFQTRI-----MPFTDDRKIITSSADGQVRLGQIFEDG-----RMDTKRLGKHQGRVYKLAVEPGSPYII 119 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~-----~~~~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l 119 (439)
...+.+|...|++++| ++ .++.+|++|+.|++|++|++.+.+ ......+.+|...|.+++|+|++. ++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~-~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l 91 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKEN-EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FA 91 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTT-CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT-EE
T ss_pred eeeeccchhhhhheeeEEEeecC-CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC-EE
Confidence 3456899999999999 43 278899999999999999997543 223456889999999999999997 67
Q ss_pred EEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC
Q 013644 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 199 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 199 (439)
++++.|++|++||+++++....+.. |...|.+++|+|++ .+|++++.|+.|++||+......
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~-----------h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~------ 153 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVG-----------HQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF------ 153 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEEC-----------CCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcC-----------CCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee------
Confidence 8999999999999999987776654 67789999999987 89999999999999998743210
Q ss_pred CCcccccccccccCCCccEEEEEEccCC----------CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE
Q 013644 200 TPVDTFCPRHLIGKNNIHITGLAYSNTS----------ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 268 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
.......|...|.+++|+|++ .++++++ |+.|++||... .....+
T Consensus 154 -------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------~~~~~~ 209 (343)
T 2xzm_R 154 -------SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----------------QIRYTF 209 (343)
T ss_dssp -------ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------EEEEEE
T ss_pred -------eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------ceeEEE
Confidence 011124678889999999987 6788776 99999999432 345667
Q ss_pred eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC-CceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 269 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 269 ~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.+|... |.+++ |+|+|++|++|+.||.|++||+.. ......+. +...|.+++|+|++++++++ .|+.|++|++.
T Consensus 210 ~~h~~~--v~~~~-~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~ 284 (343)
T 2xzm_R 210 KAHESN--VNHLS-ISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLM 284 (343)
T ss_dssp ECCSSC--EEEEE-ECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred cCcccc--ceEEE-ECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence 788765 99999 899999999999999999999944 34444443 45679999999999887654 68889999997
Q ss_pred CCCCC---CCC-----------CchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 348 PTDFP---PLP-----------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 348 ~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
+++.. .+. +|...+..+. +++++..+++++.||.|++|++.++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA-WNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEE-ECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEE-ECCCCCeEEEecCCceEEEEEEEccC
Confidence 66542 222 3444444444 56677889999999999999987653
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-43 Score=310.62 Aligned_cols=308 Identities=14% Similarity=0.123 Sum_probs=227.1
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
..++.|.++|++++|+|+|++||+|+.|+.|++|++.++. .....+.+|...|.+++|+| ++++|++++.|++|++|
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP--KSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT--TTCCEEEEETTSSEEEC
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC--CCCEEEEEeCCCeEEEE
Confidence 4456678899999999999999999999999999998873 33444679999999999999 99999999999999999
Q ss_pred EcccCc-eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc---eeeEEeeccCCCCCCCCceeeeEE
Q 013644 87 QIFEDG-RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA---TRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
|+.++. ......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++. ...+.. .|...|.+
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~h~~~v~~ 151 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKR----------PLRSTILS 151 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECS----------SCCSCEEE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeec----------ccCCCeEE
Confidence 998876 333456788999999999999998 577999999999999998764 333221 15678999
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC---CCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD---TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 238 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i 238 (439)
++|+|++ .+|++++.|+.|++||++........... ...........+ .|...|.+++|+|++++|++++ |+.|
T Consensus 152 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 9999987 89999999999999999755432211110 000111122222 7889999999999999999886 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC-CC-cee------
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GG-KLV------ 310 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~-~~~------ 310 (439)
++||+.++..+ ......+.+|... +.+++ |+|++++|++|+.++.+ +|+.. ++ +..
T Consensus 230 ~iwd~~~~~~~------------~~~~~~~~~~~~~--v~~~~-~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 230 TIAYPSAPEQP------------PRALITVKLSQLP--LRSLL-WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp C-CEECSTTSC------------EEECCCEECSSSC--EEEEE-EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEEECCCCCCc------------ceeeEeecCCCCc--eEEEE-EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 99999887210 0115677788765 99999 89999999999877766 66543 21 000
Q ss_pred ----------------------------Eee----------------cccccceEEEeecCCCc----EEEEEecCCeEE
Q 013644 311 ----------------------------RLM----------------VGDRHVVNQLEPHPHIP----MFATCGIEKTVK 342 (439)
Q Consensus 311 ----------------------------~~~----------------~~h~~~v~~~~~s~~~~----~l~s~~~dg~i~ 342 (439)
..+ ..|...|+++++.+... .|+|++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 001 13889999999766442 699999999999
Q ss_pred Eecc
Q 013644 343 LWAP 346 (439)
Q Consensus 343 iw~~ 346 (439)
+|++
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-41 Score=290.57 Aligned_cols=271 Identities=17% Similarity=0.227 Sum_probs=202.5
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
+..+.+|.+.|++++|+|+|++||+|+.|++|+||++.... .....+.+|.+.|++++|+|..++++|++++.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 35678999999999999999999999999999999997542 33445689999999999986223889999999999999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
||+.+++......+.+|...|.+++|+|+ +. +|++++.|+.|++||++.+......... .|...|.++
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~---------~h~~~v~~~ 151 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIID---------AHAIGVNSA 151 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEE---------CCSSCEEEE
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeee---------cccCccceE
Confidence 99987754444567789999999999997 65 6889999999999999876432111111 166779999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFE 242 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d 242 (439)
+|+|+.... .+ .. ...+++++|++++ |+.|++||
T Consensus 152 ~~~p~~~~~------~~--------~~-------------------------------~~~~~~~~l~sgs~D~~v~lwd 186 (297)
T 2pm7_B 152 SWAPATIEE------DG--------EH-------------------------------NGTKESRKFVTGGADNLVKIWK 186 (297)
T ss_dssp EECCCC---------------------------------------------------------CCEEEEEETTSCEEEEE
T ss_pred eecCCcccc------cc--------cC-------------------------------CCCCCcceEEEEcCCCcEEEEE
Confidence 999964100 00 00 0012234455544 56666666
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC---ceEEEeCCCCeEEEEecCCCc---eeEee--c
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLFIWKKKGGK---LVRLM--V 314 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~---~~~~~--~ 314 (439)
++.+. ........+.+|... |.+++ |+|++ ++|++++.|++|++||+.+.. ....+ .
T Consensus 187 ~~~~~------------~~~~~~~~l~~H~~~--V~~v~-~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~ 251 (297)
T 2pm7_B 187 YNSDA------------QTYVLESTLEGHSDW--VRDVA-WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE 251 (297)
T ss_dssp EETTT------------TEEEEEEEECCCSSC--EEEEE-ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS
T ss_pred EcCCC------------ceEEEEEEecCCCCc--eEEEE-ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc
Confidence 54431 000133466778765 99999 79984 899999999999999988643 12233 4
Q ss_pred ccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 315 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 315 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.|...|.+++|+|++++||+++.||.|++|+..
T Consensus 252 ~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 252 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 678899999999999999999999999999975
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.4e-42 Score=310.38 Aligned_cols=335 Identities=13% Similarity=0.163 Sum_probs=253.5
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
.+++++|+|+|++|++|+.|+.|++||+.+...... +..| ..+....|+| ++++|++++.|+.|++||+.++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~- 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM-LKRA-DYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQR- 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT-SCSC-CEEEEEEECS--SSCEEEEEETTSCEEEECTTSCEEE-
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeE-EecC-CceEEEEEec--CCCEEEEEECCCCEEEEeCCCccee-
Confidence 345899999999999999999999999988765443 3444 4455557788 9999999999999999999876554
Q ss_pred eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE
Q 013644 96 TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV 175 (439)
Q Consensus 96 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 175 (439)
..+.+|...|.+++|+|+++ +|++++.|+.|++||+++++....+.. |...|.+++|+|++ .+|++
T Consensus 133 -~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~~~~~-~~l~s 198 (420)
T 3vl1_A 133 -EIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIG-----------HRATVTDIAIIDRG-RNVLS 198 (420)
T ss_dssp -EETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEEC-----------CSSCEEEEEEETTT-TEEEE
T ss_pred -eecccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcC-----------CCCcEEEEEEcCCC-CEEEE
Confidence 45779999999999999998 688999999999999999988777654 67789999999987 89999
Q ss_pred eecCceEEEEeCcCCcccCCCCCCC----Ccccccc-----cccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccC
Q 013644 176 GGSDEYARVYDIRKCHWYSPISSDT----PVDTFCP-----RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNM 245 (439)
Q Consensus 176 ~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 245 (439)
++.|+.|++||+++++....+.... .+..... ......+...+.+++|+|++++|++++ |+.|++||+.+
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 9999999999999876544322110 0000000 001112345666777789999999886 99999999987
Q ss_pred CCCCCCCCCCcccccccccceeEe-CCCCcceeeeEEeeCCCCc-eEEEeCCCCeEEEEecCCCce-eEeecc-cccceE
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKL-VRLMVG-DRHVVN 321 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-h~~~v~ 321 (439)
+ .....+. .|.. .+.+++ |+|+++ +|++|+.||.|++||+.+++. +..+.+ |...|.
T Consensus 279 ~----------------~~~~~~~~~~~~--~v~~~~-~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 279 K----------------EQTIQLPSKFTC--SCNSLT-VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN 339 (420)
T ss_dssp C----------------CEEEEECCTTSS--CEEEEE-ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE
T ss_pred C----------------ceeEEcccccCC--CceeEE-EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce
Confidence 6 3333333 3444 499999 899998 999999999999999998754 677776 567888
Q ss_pred EEeecCCCcEEEEEecCCeEEEeccCCCCC----------CCCCCchhhhhhhhccccCcc---eEEEeCCCcEEEEEEe
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAPMPTDF----------PPLPDNAEKIMKANKQGREDH---SRITLTPDVIMHVLRL 388 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---~~~~~s~dg~v~~w~~ 388 (439)
++.+ +++++|++++.||.|++|++..... ..+..+...+.... +..+.. .+++.+.+|.+.+|++
T Consensus 340 ~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 340 NVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC-YVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp EEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE-EECCSSSSCEEEEEETTTEEEEEES
T ss_pred EEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE-EccCCCCcceEEEEcCCceEEEEec
Confidence 8855 5788999999999999999876322 11223344444443 333444 5777777899999987
Q ss_pred cc
Q 013644 389 QR 390 (439)
Q Consensus 389 ~~ 390 (439)
.+
T Consensus 418 ~~ 419 (420)
T 3vl1_A 418 SN 419 (420)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-42 Score=317.37 Aligned_cols=328 Identities=8% Similarity=0.064 Sum_probs=235.6
Q ss_pred cccceEEEEECCCC---------CEEEE-------------------ecCCCeEEEEeCCCCccee---eeecCCcccEE
Q 013644 13 HKGCVNAVEFNSTG---------DFLVS-------------------GSDDKLVIFWDWKDRREKF---SYLSGHLDNIF 61 (439)
Q Consensus 13 h~~~I~~~~~s~~~---------~~l~t-------------------~~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~ 61 (439)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++... ..+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56788888888876 56665 5578999999998765422 22456788999
Q ss_pred EEEEeec----CCCcEEEEecCCCcEEEEEcccCcee---------eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 62 QTRIMPF----TDDRKIITSSADGQVRLGQIFEDGRM---------DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 62 ~~~~~~~----~~~~~l~s~~~dg~i~iw~~~~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
+++|+|. .++.+||+++.||+|++||+.++... ....+.+|...|++++|++++ .|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEE
Confidence 9999992 12579999999999999999765421 123577899999999999864 68899999999
Q ss_pred EEEEccCCCce-eeEEeeccCCCCCCCCceeeeEEE--eecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccc
Q 013644 129 QHFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAI--VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 205 (439)
Q Consensus 129 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 205 (439)
++||++++... ..+.. |...|.++ +|+|++.++|++|+.|++|++||+++++...
T Consensus 290 ~lWD~~~~~~~~~~~~~-----------H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----------- 347 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQV-----------HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----------- 347 (524)
T ss_dssp EEEETTBCSSCSEEEEC-----------SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-----------
T ss_pred EEEECCCCCCceEEeec-----------ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-----------
Confidence 99999976432 22332 67789999 5677544799999999999999998765211
Q ss_pred cccccccCCC--ccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe
Q 013644 206 CPRHLIGKNN--IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 282 (439)
Q Consensus 206 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 282 (439)
. +.+|. ..|.+++|+|+++.+++++ |+.|++||++.+ .....+.+|... |.+++
T Consensus 348 ---~-~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----------------~~~~~l~gH~~~--V~sva- 404 (524)
T 2j04_B 348 ---T-TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----------------FAVHPLVSRETT--ITAIG- 404 (524)
T ss_dssp ---E-EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----------------TCCEEEEECSSC--EEEEE-
T ss_pred ---c-cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc----------------ccceeeecCCCc--eEEEE-
Confidence 1 12222 3478899999998888876 889999999876 455678888876 99999
Q ss_pred eCCCCceEEEeCCCCeEEEEecCCCceeEeecc-----cccceEEEeecCCCcEEEEEecCCeEEEecc--CCCCCCCCC
Q 013644 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP--MPTDFPPLP 355 (439)
Q Consensus 283 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~--~~~~~~~~~ 355 (439)
|+|+|++|++|+.||+|++||+... .+..... +...|.+++|+|+++.+. ... .+.+|.. .+..+..+.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKID 480 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC------------
T ss_pred eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeec
Confidence 8999999999999999999998653 3222211 112578999999998653 222 3344443 355567788
Q ss_pred CchhhhhhhhccccC--cceEEEeCCCcEEEEEEeccc
Q 013644 356 DNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~--~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+|...|..+.+.+.. ...+++++.||.|++|+++..
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 888888888754432 458899999999999998765
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-41 Score=304.52 Aligned_cols=280 Identities=11% Similarity=0.085 Sum_probs=239.8
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
|.+.|++++|+|++++|++|+.||.|++|+ .++..+. .+..|...|.+++|+| ++.+|++++.|+.|++||+.+++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN-VLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE-EECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee-eccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCc
Confidence 788999999999999999999999999999 4444444 4578999999999999 99999999999999999998876
Q ss_pred eeeeEEecCCCCc---------------eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 93 RMDTKRLGKHQGR---------------VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 93 ~~~~~~~~~~~~~---------------v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
.. ..+..+... +.+++|+|++ .+++++.++.|++||+++++....+.. |.
T Consensus 183 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~-----------~~ 247 (425)
T 1r5m_A 183 VM--QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG-----------HH 247 (425)
T ss_dssp EE--EEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC-----------CS
T ss_pred EE--EEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc-----------CC
Confidence 65 345555555 9999999986 477999999999999999877666543 56
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 236 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~ 236 (439)
..|.+++|+|++ .+|++++.|+.|++||+++++. ...+..|...|.+++|+|++ ++++++ ++
T Consensus 248 ~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 248 GPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS---------------QNCFYGHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp SCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC---------------SEEECCCSSCEEEEEEETTT-EEEEEETTS
T ss_pred CceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc---------------ceEecCCCccEEEEEECCCC-EEEEEeCCC
Confidence 779999999987 7999999999999999987652 12225678899999999999 666665 99
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc--------
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-------- 308 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------- 308 (439)
.|++||+.++ +....+..|... +.+++ |+|++++|++++.||.|++||+.+++
T Consensus 311 ~i~i~d~~~~----------------~~~~~~~~~~~~--i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 311 SVRLWSLKQN----------------TLLALSIVDGVP--IFAGR-ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp EEEEEETTTT----------------EEEEEEECTTCC--EEEEE-ECTTSSEEEEEETTSCEEEEECHHHHC-------
T ss_pred cEEEEECCCC----------------cEeEecccCCcc--EEEEE-EcCCCCEEEEEECCCeEEEEECCCCccceeeeec
Confidence 9999999876 566677777665 89999 89999999999999999999999888
Q ss_pred ------------eeEeeccccc--ceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 309 ------------LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 309 ------------~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
++..+.+|.. .|++++|+|++++|++++.||.|++|++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8899999976 99999999999999999999999999986
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-40 Score=303.09 Aligned_cols=321 Identities=18% Similarity=0.291 Sum_probs=262.6
Q ss_pred cceeeeeeccccce-EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 4 INLCGKLHGHKGCV-NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 4 ~~~~~~l~~h~~~I-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
++..+.+.+|.+.| +++ +++|++|++|+.||.|++||+.+++.+.. +.+|...|.+++|+ +++|++++.||+
T Consensus 108 ~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~----~~~l~s~~~dg~ 180 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHTGGVWSSQMR----DNIIISGSTDRT 180 (445)
T ss_dssp CCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEE-CCCCSSCEEEEEEE----TTEEEEEETTSC
T ss_pred cceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEE-EcCCCCCEEEEEec----CCEEEEEeCCCe
Confidence 44567899999875 554 45689999999999999999998876655 57999999999996 469999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
|++||+.+++.. ..+.+|...|.+++|+++ .+++++.||.|++||+.+++....+.. |...+.+
T Consensus 181 i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~-----------~~~~v~~ 244 (445)
T 2ovr_B 181 LKVWNAETGECI--HTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMG-----------HVAAVRC 244 (445)
T ss_dssp EEEEETTTTEEE--EEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEEC-----------CSSCEEE
T ss_pred EEEEECCcCcEE--EEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcC-----------CcccEEE
Confidence 999999887665 557899999999999643 588999999999999999988776654 5677999
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+.++ + .++++|+.||.|++||+++++.+ ..+..|...|.++.| ++.++++++ |+.|++|
T Consensus 245 ~~~~--~-~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 245 VQYD--G-RRVVSGAYDFMVKVWDPETETCL---------------HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp EEEC--S-SCEEEEETTSCEEEEEGGGTEEE---------------EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred EEEC--C-CEEEEEcCCCEEEEEECCCCcEe---------------EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 9993 3 78999999999999999876521 223567889999999 778888876 9999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc---ccc
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRH 318 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~ 318 (439)
|+.++ +....+.+|... +.++. ++++++++|+.||.|++||+.+++.+..+.+ |..
T Consensus 305 d~~~~----------------~~~~~~~~~~~~--v~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 363 (445)
T 2ovr_B 305 DVETG----------------NCIHTLTGHQSL--TSGME---LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363 (445)
T ss_dssp ETTTC----------------CEEEEECCCCSC--EEEEE---EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred ECCCC----------------CEEEEEcCCccc--EEEEE---EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC
Confidence 99877 566777777765 67766 3678999999999999999999999998886 788
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCC-----CCchhhhhhhhccccCcceEEEeCCCcE----EEEEEe
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-----PDNAEKIMKANKQGREDHSRITLTPDVI----MHVLRL 388 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~dg~----v~~w~~ 388 (439)
.|.+++|+ +++|++++.||.|++|++.+++. ..+ .++...+.... +.++...+++++.||+ +.+|++
T Consensus 364 ~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 364 AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEEEEEEcccCCCCccEEEEEEC
Confidence 99999995 57999999999999999988765 222 23444444443 4566778888999987 999998
Q ss_pred ccc
Q 013644 389 QRR 391 (439)
Q Consensus 389 ~~~ 391 (439)
...
T Consensus 441 ~~~ 443 (445)
T 2ovr_B 441 DVD 443 (445)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-40 Score=302.21 Aligned_cols=331 Identities=16% Similarity=0.199 Sum_probs=259.4
Q ss_pred eeeeeeccccce-EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEE
Q 013644 6 LCGKLHGHKGCV-NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVR 84 (439)
Q Consensus 6 ~~~~l~~h~~~I-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 84 (439)
....|++|.+.| .++.+ ++++|++|+.||+|++||+.+++.+.. +.+|...|.+++|+| ++ +|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~-~~~h~~~V~~l~~~~--~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKYAH--GG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECS--TT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE-EeCCCcCEEEEEEcC--CC-EEEEEeCCCCEE
Confidence 456899999885 66666 577999999999999999999876655 579999999999998 66 999999999999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEcc--CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC-------C-----C
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEP--GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS-------E-----N 150 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~-----~ 150 (439)
+||+.+++.. ..+.+|...|.+++|++ +++ ++++++.|+.|++||++++............ . .
T Consensus 187 vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 187 VWDIKKGCCT--HVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEETTTTEEE--EEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEECCCCcEE--EEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 9999887765 55888999999999995 554 7889999999999999987644321110000 0 0
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEE
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 230 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 230 (439)
.....|...+.++. +++ .++++|+.|+.|++||+++++. ...+.+|...|.+++|+|+++++
T Consensus 264 ~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 264 GVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKC---------------LYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp EEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEEETTTTEE
T ss_pred EEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCEEEEEEcCCCCEE
Confidence 00122556677764 444 7999999999999999987653 22336788999999999999999
Q ss_pred EEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce
Q 013644 231 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 231 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 309 (439)
++++ |+.|++||+.++ +....+.+|... +.++. ++ +++|++++.||.|++||+.+++.
T Consensus 326 ~sg~~dg~i~vwd~~~~----------------~~~~~~~~h~~~--v~~~~-~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENG----------------ELMYTLQGHTAL--VGLLR-LS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp EEEETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEE-EC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEeCCCcEEEEECCCC----------------cEEEEEeCCCCc--EEEEE-Ec--CCEEEEEeCCCcEEEEECCCCce
Confidence 9887 999999999877 577788888876 88888 54 68999999999999999998877
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC--CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
..... |...+..++|+|++++|++++ ||.|++|++.+++.. .+..+...+..+.+ .+...+++++.||.+.+|-
T Consensus 385 ~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~--~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 385 KFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEE--ETTEEEEEEEETTEEEEEE
T ss_pred eeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEe--cCCEEEEEEEeCCeEEEEE
Confidence 66554 566788899999999999998 899999999988763 35556666666554 2455666777788776664
Q ss_pred e
Q 013644 388 L 388 (439)
Q Consensus 388 ~ 388 (439)
+
T Consensus 461 l 461 (464)
T 3v7d_B 461 L 461 (464)
T ss_dssp E
T ss_pred e
Confidence 3
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-40 Score=296.59 Aligned_cols=314 Identities=14% Similarity=0.096 Sum_probs=248.7
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
+..|..+|++++|+| ++++|++++.|+.|++|++.+++......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECC--CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEEEEE
Confidence 346889999999999 99999999999999999998876334466888999999999999998 677999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
+++++......... |...+.+++|+|++ .+|++++.|+.|++||++..+.. ........
T Consensus 81 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------~~~~~~~~ 139 (372)
T 1k8k_C 81 LKGRTWKPTLVILR---------INRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------WVCKHIKK 139 (372)
T ss_dssp EETTEEEEEEECCC---------CSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------EEEEEECT
T ss_pred CCCCeeeeeEEeec---------CCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------eeeeeeec
Confidence 98887554443211 56679999999987 89999999999999999875410 01122335
Q ss_pred CCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcc--cccccccceeEeCCCCcceeeeEEeeCCCCce
Q 013644 213 KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPE--DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~ 289 (439)
.|...|.+++|+|++++|++++ |+.|++||+.............+ ..........+.+|... +.+++ |+|++++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~-~~~~~~~ 216 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVC-FSANGSR 216 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEE-ECSSSSE
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe--EEEEE-ECCCCCE
Confidence 6788999999999999999887 99999999764321111000000 01122445556666654 99999 8999999
Q ss_pred EEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCC--CCC----------------
Q 013644 290 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--TDF---------------- 351 (439)
Q Consensus 290 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~---------------- 351 (439)
|++++.||.|++||+.+++++..+..|..+|.+++|+|++++|+++ .|+.|++|++.. +..
T Consensus 217 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 217 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 9999999999999999999999999999999999999999988887 899999999976 310
Q ss_pred -----------------------CCC-CCchhhhhhhhccccCc---ceEEEeCCCcEEEEEEeccccee
Q 013644 352 -----------------------PPL-PDNAEKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 352 -----------------------~~~-~~~~~~~~~~~~~~~~~---~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
..+ .+|...+..+.+...++ ..+++++.||.|++|++.+.+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 222 36777777776655665 89999999999999999886543
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-39 Score=292.13 Aligned_cols=283 Identities=18% Similarity=0.264 Sum_probs=232.2
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee-ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY-LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
++.|+||+++ +||+|. |++|+|||..+++....+ +.+|...|++++|+| ++++|++|+.||+|++||+.+++.+
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~- 182 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRL- 182 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCCCcEE-
Confidence 5679999764 777775 899999999998765432 357888999999999 9999999999999999999887766
Q ss_pred eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCcee-eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 96 TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATR-LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 96 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
..+.+|...+.++++++ . ++++|+.|+.+++||........ .+.. |...+..+.++|++ .+++
T Consensus 183 -~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~-----------h~~~~~~~~~~~~g-~~l~ 246 (420)
T 4gga_A 183 -RNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSG-----------HSQEVCGLRWAPDG-RHLA 246 (420)
T ss_dssp -EEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEEC-----------CSSCEEEEEECTTS-SEEE
T ss_pred -EEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEecc-----------cccceeeeeecCCC-Ceee
Confidence 55889999999988864 3 78899999999999998765432 2222 66779999999987 8999
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEe--c-CCeEEEEEccCCCCCC
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY--N-DELVYLFEKNMGLGPS 250 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~-d~~i~i~d~~~~~~~~ 250 (439)
+++.|+.+++|+...++... ........|...|.+++|+|.+ .+++++ + |+.|++||+.++
T Consensus 247 s~~~D~~v~i~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---- 311 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGW-----------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---- 311 (420)
T ss_dssp EEETTSCEEEEESSCCSSCS-----------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT----
T ss_pred eeeccccceEEeeccccccc-----------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc----
Confidence 99999999999998765211 1223336778899999999976 455543 3 899999999887
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC--CCCeEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
.....+..+.. +.++. |+++++.+++++ .|+.|++||+.+++++..+.+|.+.|++++|+|+
T Consensus 312 ------------~~~~~~~~~~~---v~~~~-~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 312 ------------ACLSAVDAHSQ---VCSIL-WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp ------------EEEEEEECSSC---EEEEE-EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ------------ccceeeccccc---eeeee-ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 45555655543 77888 788888887654 7899999999999999999999999999999999
Q ss_pred CcEEEEEecCCeEEEeccCCCCC
Q 013644 329 IPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
|++|+||+.|++|+||++.....
T Consensus 376 g~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 376 GATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp SSCEEEEETTTEEEEECCSCSSC
T ss_pred CCEEEEEecCCeEEEEECCCCCc
Confidence 99999999999999999976543
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-40 Score=289.86 Aligned_cols=294 Identities=10% Similarity=0.084 Sum_probs=240.2
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc--eeeeecCCcccEEEEEEeecCCCc-EEEEecCCC
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE--KFSYLSGHLDNIFQTRIMPFTDDR-KIITSSADG 81 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg 81 (439)
+.+....+|.+.|++++|+|++++|++++.|+.|++|++.++.. ....+..|...|.+++|+| ++. +|++++.||
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg 79 (342)
T 1yfq_A 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--NTDLQIYVGTVQG 79 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--SSSEEEEEEETTS
T ss_pred cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC--CCCcEEEEEcCCC
Confidence 34455668999999999999999999999999999999988761 1223458999999999999 999 999999999
Q ss_pred cEEEEEc-ccCceeeeEEecC--CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC---------CCceeeEEeeccCC
Q 013644 82 QVRLGQI-FEDGRMDTKRLGK--HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS---------DSATRLFYCSSFSE 149 (439)
Q Consensus 82 ~i~iw~~-~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~ 149 (439)
.|++|++ .++.. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++....+.
T Consensus 80 ~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------ 148 (342)
T 1yfq_A 80 EILKVDLIGSPSF---QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK------ 148 (342)
T ss_dssp CEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS------
T ss_pred eEEEEEeccCCce---EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe------
Confidence 9999999 76644 55777 999999999999 65 688999999999999987 44433322
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CC
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TS 227 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 227 (439)
+...+.+++|+|++ +++++.++.|++||+++ +.. ........+...+.+++|+| ++
T Consensus 149 ------~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 149 ------VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-------------NGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp ------SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-------------CCEEEECSCSSCEEEEEECSGGG
T ss_pred ------eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-------------cceeeecCCCCceeEEEECCCCC
Confidence 56679999999853 99999999999999987 431 11222345678899999999 99
Q ss_pred CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-------cceeeeEEeeCCCCceEEEeCCCCeE
Q 013644 228 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-------SQTVKGVNFFGPNDEYVMSGSDCGHL 299 (439)
Q Consensus 228 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~s~~~~~l~~~~~dg~i 299 (439)
+++++++ ++.+++|++...... ........+..|.. ...+.+++ |+|++++|++++.||.|
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDD----------YNSSKRFAFRCHRLNLKDTNLAYPVNSIE-FSPRHKFLYTAGSDGII 275 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCS----------TTCTTCEEEECCCCCTTCCSSCCCEEEEE-ECTTTCCEEEEETTSCE
T ss_pred CEEEEEecCCcEEEEEEcCCCcc----------cccccceeeecccccccccccceeEEEEE-EcCCCCEEEEecCCceE
Confidence 9998886 999999998764100 00134456666654 22499999 89999999999999999
Q ss_pred EEEecCCCceeEeeccc-ccceEEEeecCCCcEEEEEecCCe-EEEecc
Q 013644 300 FIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIEKT-VKLWAP 346 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~ 346 (439)
++||+.+++++..+.+| ...|.+++ |++++|++++.||. .+.|..
T Consensus 276 ~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 276 SCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99999999999999998 99999999 99999999999998 655553
No 67
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.9e-40 Score=299.06 Aligned_cols=304 Identities=15% Similarity=0.245 Sum_probs=227.3
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc----------eeeeecCCc------------ccEEEEEEeecCC
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE----------KFSYLSGHL------------DNIFQTRIMPFTD 70 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----------~~~~~~~h~------------~~v~~~~~~~~~~ 70 (439)
|.+.|++++|+|+|++||+|+.||.|+||++.++.. ....+.+|. ..|.+++|+| +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--Q 104 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--C
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--C
Confidence 679999999999999999999999999999987762 344467898 8899999999 7
Q ss_pred C--cEEEEecCCCcEEEEEcccCceee-------------------------------------e-EEecCCCCceEEEE
Q 013644 71 D--RKIITSSADGQVRLGQIFEDGRMD-------------------------------------T-KRLGKHQGRVYKLA 110 (439)
Q Consensus 71 ~--~~l~s~~~dg~i~iw~~~~~~~~~-------------------------------------~-~~~~~~~~~v~~i~ 110 (439)
+ .+|++++.|++|++|++.++.... . ....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 7 799999999999999997643210 0 12467999999999
Q ss_pred EccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 111 VEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 111 ~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
|+|+++ +|+++ .|+.|++||+++. +....+.... .....|...|.+++|+|+++.+|++|+.||.|++||+++
T Consensus 185 ~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 185 INSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKP----ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp ECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCC----SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeeccc----ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 999998 57787 7999999999843 3333221110 012236778999999998768999999999999999998
Q ss_pred CcccC----CCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccC-CCCCCCCCCCccccccccc
Q 013644 190 CHWYS----PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM-GLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 190 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 264 (439)
++... .+...... ........|...|.+++|+|++++|++++++.|++||+.. + +.
T Consensus 259 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~----------------~~ 319 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDP---SNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN----------------RP 319 (447)
T ss_dssp CSSSCTTCEEECCC--------CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS----------------SC
T ss_pred CccccceeeEeccCCCc---cccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc----------------cc
Confidence 76311 10000000 0000112233489999999999999998789999999986 4 45
Q ss_pred ceeEeCCCCcce-------------eeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec-----------------
Q 013644 265 PQVYSGHRNSQT-------------VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV----------------- 314 (439)
Q Consensus 265 ~~~~~~~~~~~~-------------v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------- 314 (439)
...+.+|..... +..++ |+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 320 VETYQVHEYLRSKLCSLYENDCIFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp SCCEESCGGGTTTHHHHHHTSGGGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCE
T ss_pred cceeeccccccccccccccccccccceEEE-ECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccc
Confidence 566666643211 23377 89999999999999999999999887653 22
Q ss_pred ----------------ccccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 315 ----------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 315 ----------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
.+...|..++|+|++++||+++.++ +.+|.-
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2235688999999999999998775 777764
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=292.11 Aligned_cols=297 Identities=14% Similarity=0.143 Sum_probs=239.6
Q ss_pred ccceeeeeeccccceEEEEECCC---CCEEEEecCCCeEEEEeCCC-CcceeeeecCCcccEEEEEEeecCCCcEEEEec
Q 013644 3 RINLCGKLHGHKGCVNAVEFNST---GDFLVSGSDDKLVIFWDWKD-RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS 78 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~---~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 78 (439)
.++.++.+++|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+...+.+|...|.+++|+| ++++|++++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~ 105 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD--DGSKVFTAS 105 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc--CCCEEEEEc
Confidence 45677889999999999999999 69999999999999999988 5555466789999999999999 999999999
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEE--ccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAV--EPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
.||.|++||+.+++... +..|...|.+++| +|++. +|++++.|+.|++||+++++....+..
T Consensus 106 ~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~------------ 169 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQL------------ 169 (368)
T ss_dssp TTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEEC------------
T ss_pred CCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEec------------
Confidence 99999999998776542 5569999999999 88886 688999999999999999988777653
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE----EEE
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL----LIS 232 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~ 232 (439)
...+.++.+.+ ..+++++.++.+++|+++..... ...........+.++.+.++... +++
T Consensus 170 ~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 170 PERCYCADVIY---PMAVVATAERGLIVYQLENQPSE-------------FRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEE-------------EEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred CCCceEEEecC---CeeEEEeCCCcEEEEEeccccch-------------hhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 23466777765 47888899999999999875321 11111233445566666555432 666
Q ss_pred ec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcc----------eeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 233 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ----------TVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 233 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
++ ++.|++|++..... ......+.+|.... .+.+++ |+|++++|++++.||.|++
T Consensus 234 ~~~dg~i~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNP-------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIA-FHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EETTSEEEEEESSCSCH-------------HHHSEEEECSEEC----CCCEEECCEEEEE-ECTTTCCEEEEETTSCEEE
T ss_pred ecCCCcEEEEecCCCCc-------------cccceeeeeeecccccccccccccceEEEE-EecCCCEEEEEccCCeEEE
Confidence 65 99999999976511 12345556655411 389999 8999999999999999999
Q ss_pred EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 302 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++.
T Consensus 300 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 300 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999999999999999999999999999999999999877666654
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-39 Score=292.97 Aligned_cols=285 Identities=16% Similarity=0.241 Sum_probs=232.3
Q ss_pred eccccc--eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc
Q 013644 11 HGHKGC--VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88 (439)
Q Consensus 11 ~~h~~~--I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 88 (439)
.+|... +.++.|++ ..+++++.|+.|++|++.+++........|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEEC
Confidence 366655 44466664 56888889999999999998876665556899999999999 9999999999999999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
.+++.. ..+.+|...|.+++|++ . ++++++.||.|++||++.. .....+.. |...|.+++|+|
T Consensus 164 ~~~~~~--~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~ 227 (401)
T 4aez_A 164 ESQTKL--RTMAGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQG-----------HSSEVCGLAWRS 227 (401)
T ss_dssp TTCCEE--EEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEEC-----------CSSCEEEEEECT
T ss_pred cCCeEE--EEecCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEcC-----------CCCCeeEEEEcC
Confidence 887765 55779999999999954 3 7889999999999999954 33444432 677899999999
Q ss_pred CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec---CCeEEEEEc
Q 013644 168 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN---DELVYLFEK 243 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~---d~~i~i~d~ 243 (439)
++ .+|++|+.|+.|++||+++++. ......|...|.+++|+|++ .++++++ |+.|++||+
T Consensus 228 ~~-~~l~s~~~d~~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 228 DG-LQLASGGNDNVVQIWDARSSIP---------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp TS-SEEEEEETTSCEEEEETTCSSE---------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred CC-CEEEEEeCCCeEEEccCCCCCc---------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 76 8999999999999999987542 22235678899999999976 5666653 999999999
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE--eCCCCeEEEEecCCCceeE--eecccccc
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLVR--LMVGDRHV 319 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~--~~~~h~~~ 319 (439)
.++ +....+..+ . .+.+++ |+|+++++++ |+.||.|++|++.+++... .+.+|...
T Consensus 292 ~~~----------------~~~~~~~~~-~--~v~~~~-~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~ 351 (401)
T 4aez_A 292 ATG----------------ARVNTVDAG-S--QVTSLI-WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351 (401)
T ss_dssp TTC----------------CEEEEEECS-S--CEEEEE-ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred CCC----------------CEEEEEeCC-C--cEEEEE-ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence 876 444555433 2 389999 8999999998 6689999999999865544 46789999
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 352 v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 352 VLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp CCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 99999999999999999999999999987765
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-39 Score=294.00 Aligned_cols=301 Identities=11% Similarity=0.110 Sum_probs=238.1
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
..+.+| ..+....|+|++++|++|+.||.|++||+.++... ..+.+|...|++++|+| ++++|++++.|++|++||
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-EIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWS 167 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-EETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-eecccccCccEEEEECC--CCCEEEEEeCCCeEEEEe
Confidence 344455 44556678999999999999999999999877654 44579999999999999 999999999999999999
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCC-------------CCC
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENS-------------KQP 154 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~ 154 (439)
+.+++.. ..+.+|...|.+++|+|+++ +|++++.|+.|++||+++++....+......... ...
T Consensus 168 ~~~~~~~--~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 168 VKDGSNP--RTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp TTTCCCC--EEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred CCCCcCc--eEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee
Confidence 9887766 45788999999999999998 6779999999999999998877666432111000 001
Q ss_pred CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEe
Q 013644 155 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 233 (439)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 233 (439)
.+...+.+++|+|++ .+|++|+.||.|++||+++++ ........|...|.+++|+|++. +|+++
T Consensus 245 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 245 ISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKE--------------QTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp GCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCC--------------EEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCc--------------eeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 123456667778876 899999999999999998865 22333356788999999999998 88888
Q ss_pred c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC-----
Q 013644 234 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----- 307 (439)
Q Consensus 234 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----- 307 (439)
+ |+.|++||+.++. .....+..|... .+.++. + +++++|++++.||.|++|++...
T Consensus 310 ~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~-~v~~~~-~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 371 (420)
T 3vl1_A 310 YENGMLAQWDLRSPE---------------CPVGEFLINEGT-PINNVY-F-AAGALFVSSGFDTSIKLDIISDPESERP 371 (420)
T ss_dssp ETTSEEEEEETTCTT---------------SCSEEEEESTTS-CEEEEE-E-ETTEEEEEETTTEEEEEEEECCTTCCSC
T ss_pred eCCCeEEEEEcCCCc---------------CchhhhhccCCC-CceEEE-e-CCCCEEEEecCCccEEEEeccCCCCCcc
Confidence 6 9999999998762 235566664332 377775 4 57899999999999999998763
Q ss_pred ----ceeEeecccccceEEEeecCCCc---EEEEEecCCeEEEeccCC
Q 013644 308 ----KLVRLMVGDRHVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 308 ----~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~ 348 (439)
.....+.+|...|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 372 AIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234567888999999999999 778888899999999864
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.1e-41 Score=291.07 Aligned_cols=274 Identities=18% Similarity=0.212 Sum_probs=202.8
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc-eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE-KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ....+.+|...|++++|+|..++++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 45679999999999999999999999999999999987643 34456899999999999862238899999999999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
|++++.......+.+|...|.+++|+|+ +. +|++++.|+.|++||++.+....... ....|...+.+++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~--------~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKK--------INNAHTIGCNAVS 157 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECC--------BTTSSSSCBCCCE
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceee--------eeccccCCcceEE
Confidence 9987654445667889999999999998 54 68899999999999998764221111 1122667789999
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEc
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEK 243 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~ 243 (439)
|+|+... +.+ .+...+. ..+.+++|++++ |+.|++||+
T Consensus 158 ~~~~~~~--------~~~--~~~~~~~-------------------------------~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 158 WAPAVVP--------GSL--IDHPSGQ-------------------------------KPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp ECCCCCC----------------CCSC-------------------------------CCCCCCBEECCBTTSBCCEEEE
T ss_pred EccccCC--------ccc--ccccccc-------------------------------CccccceEEEecCCCeEEEEEe
Confidence 9996410 000 0000000 012345677765 888888887
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC----ceEEEeCCCCeEEEEecCCCc----eeEeecc
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND----EYVMSGSDCGHLFIWKKKGGK----LVRLMVG 315 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~~----~~~~~~~ 315 (439)
.... .......+.+|... |.+++ |+|++ ++|++++.|++|++|++.+.. ....+..
T Consensus 197 ~~~~-------------~~~~~~~l~~h~~~--V~~v~-~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 197 EEDG-------------QWKEEQKLEAHSDW--VRDVA-WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp CTTS-------------CEEEEECCBCCSSC--EEEEE-CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred CCCC-------------ccceeeecccCCCc--eEEEE-ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 5321 01234456777765 99999 89986 899999999999999987631 2334567
Q ss_pred cccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 316 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
|...|.+++|+|++++||+++.||.|++|+..
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 88999999999999999999999999999975
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.9e-39 Score=283.99 Aligned_cols=311 Identities=16% Similarity=0.238 Sum_probs=237.3
Q ss_pred EecCCCe--EEEEeCCCCc-ceeeeecCCcccEEEEEEeecCC-CcEEEEecCCCcEEEEEcccCce---eeeEEecCCC
Q 013644 31 SGSDDKL--VIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTD-DRKIITSSADGQVRLGQIFEDGR---MDTKRLGKHQ 103 (439)
Q Consensus 31 t~~~dg~--i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~ 103 (439)
+|...|+ +.++...+.+ .+...+.+|.+.|++++|+| + +++|+||+.|++|+|||+.+.+. .....+.+|.
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~ 86 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence 3434444 3333433333 23445789999999999999 6 68999999999999999976543 3445688999
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 183 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 183 (439)
..|.+++|+|+++ +|++++.|+.|++|+............ +...+..+.+++.+ .+|++++.|+.++
T Consensus 87 ~~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~l~s~s~d~~~~ 153 (340)
T 4aow_A 87 HFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVG-----------HTKDVLSVAFSSDN-RQIVSGSRDKTIK 153 (340)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECTTS-SCEEEEETTSCEE
T ss_pred CCEEEEEECCCCC-EEEEEcccccceEEeecccceeeeecC-----------CCCceeEEEEeecC-ccceeecCCCeEE
Confidence 9999999999998 678999999999999998776655543 34557788899976 8999999999999
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC--CEEEEec-CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
+||+.... ........|...+..++|++++ .++++++ |+.|++||+.++
T Consensus 154 ~~d~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-------------- 205 (340)
T 4aow_A 154 LWNTLGVC--------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-------------- 205 (340)
T ss_dssp EECTTSCE--------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT--------------
T ss_pred EEEeCCCc--------------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC--------------
Confidence 99987643 2223336778899999998875 4666665 999999999876
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCe
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT 340 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 340 (439)
+....+.+|... |.+++ |+|++++|++|+.||.|++||+.+.+++..+..+ ..|.+++|+|++.++ +++.|+.
T Consensus 206 --~~~~~~~~h~~~--v~~~~-~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~ 278 (340)
T 4aow_A 206 --KLKTNHIGHTGY--LNTVT-VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPS 278 (340)
T ss_dssp --EEEEEECCCSSC--EEEEE-ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTE
T ss_pred --ceeeEecCCCCc--EEEEE-ECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCE
Confidence 566778888775 99999 8999999999999999999999999999888754 689999999987655 5667999
Q ss_pred EEEeccCCCCC----------CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 341 VKLWAPMPTDF----------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 341 i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
|++|++.++.. .....|...+..+. +.+++..+++++.||.|++|++.++.
T Consensus 279 i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA-WSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTTTEEEEEECCC-------CCCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEECCCCeEEEeccccceeeeccCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999976532 12234555555554 46677899999999999999999874
No 73
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.7e-39 Score=278.21 Aligned_cols=282 Identities=18% Similarity=0.251 Sum_probs=225.1
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee-ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY-LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
.++|+||+++ +||+|. |++|+|||+.+++.+..+ +.+|...|++++|+| ++++|++|+.||+|++|++++++.+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~- 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRL- 102 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE-
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEEEEECCCcEEEeecCCceeE-
Confidence 5789999986 777764 899999999998765543 357888999999999 9999999999999999999888766
Q ss_pred eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE
Q 013644 96 TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV 175 (439)
Q Consensus 96 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 175 (439)
..+.+|...+.++.+.+ . ++++++.++.+++|+............. |...+..+.+.+++ .++++
T Consensus 103 -~~~~~h~~~~~~~~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~l~s 167 (318)
T 4ggc_A 103 -RNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSG----------HSQEVCGLRWAPDG-RHLAS 167 (318)
T ss_dssp -EEEECCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECTTS-SEEEE
T ss_pred -EEecCccceEEEeecCC--C-EEEEEecCCceEeeecCCCceeEEEEcC----------ccCceEEEEEcCCC-CEEEE
Confidence 45778999888776654 3 7889999999999998876544322211 56779999999987 89999
Q ss_pred eecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEE--Eec-CCeEEEEEccCCCCCCC
Q 013644 176 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI--SYN-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 176 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~--~~~-d~~i~i~d~~~~~~~~~ 251 (439)
++.|+.|++||+++++... ........+...|..+.++|.+. ++. +++ ++.|++|+....
T Consensus 168 ~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~----- 231 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGW-----------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----- 231 (318)
T ss_dssp EETTSCEEEEESSCBTTBS-----------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-----
T ss_pred EecCcceeEEECCCCcccc-----------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-----
Confidence 9999999999998865321 11222355678899999999874 332 334 889999998765
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe--CCCCeEEEEecCCCceeEeecccccceEEEeecCCC
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 329 (439)
..... ..+.. .+..+. ++|+++.++++ +.|+.|++||+.+++++..+.+|.+.|++++|+|++
T Consensus 232 -----------~~~~~-~~~~~--~v~~~~-~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 232 -----------ACLSA-VDAHS--QVCSIL-WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp -----------CEEEE-EECSS--CEEEEE-EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred -----------ccccc-cccee--eeeeee-ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 22222 23333 377777 67888877654 479999999999999999999999999999999999
Q ss_pred cEEEEEecCCeEEEeccCCC
Q 013644 330 PMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~~~~ 349 (439)
++||||+.||+|+||++...
T Consensus 297 ~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEecCCeEEEEECCCC
Confidence 99999999999999998654
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-40 Score=314.49 Aligned_cols=300 Identities=12% Similarity=0.152 Sum_probs=244.0
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCC----cceeeeecCCccc-EEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDR----REKFSYLSGHLDN-IFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.|.+.|++++|+|+|++|++++ ++.|++|++.++ +.... +.+|... |++++|+|..++++|++++.||.|++|
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ-FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE-ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE-EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 5889999999999999999998 789999999987 55544 5799999 999999974468899999999999999
Q ss_pred EcccC------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC----CcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 87 QIFED------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED----GFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 87 ~~~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
++.++ .......+..|...|.+++|+|++++ |++++.+ +.|++|| .++....+.. |
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-----------~ 159 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWD--SGNSLGEVSG-----------H 159 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETT--TCCEEEECCS-----------C
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCCCCccEEEEEE--CCCcceeeec-----------C
Confidence 99755 34445667889999999999999984 6677766 6888887 4444443322 6
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCc---cEEEEEEccC-CCEEEE
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI---HITGLAYSNT-SELLIS 232 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~ 232 (439)
...|.+++|+|++..++++++.|+.|++||+.+++.. ..+..|.. .|.+++|+|+ +++|++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---------------ASDRTHHKQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE---------------EEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee---------------eeecccCCCCceEEEEEECCCCCCEEEE
Confidence 7789999999998558999999999999998876532 22355677 8999999999 999998
Q ss_pred ec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE-e---CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC
Q 013644 233 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-S---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307 (439)
Q Consensus 233 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 307 (439)
++ |+.|++||+.++ +....+ . .|... +.++. |+ ++++|++++.|+.|++||+.++
T Consensus 225 ~~~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~~--v~~~~-~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 225 VGSDRKISCFDGKSG----------------EFLKYIEDDQEPVQGG--IFALS-WL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp EETTCCEEEEETTTC----------------CEEEECCBTTBCCCSC--EEEEE-ES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EeCCCeEEEEECCCC----------------CEeEEecccccccCCc--eEEEE-Ec-CCCEEEEEcCCCcEEEEECCCC
Confidence 86 999999999876 445555 4 56554 99999 78 9999999999999999999999
Q ss_pred ceeEeeccc----ccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCchhhhhh
Q 013644 308 KLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK 363 (439)
Q Consensus 308 ~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~ 363 (439)
+.+..+..+ ...+.++.|+ +++++++++.||.|++|++..++. ..+.+|...+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~ 344 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEE
T ss_pred cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEE
Confidence 999888876 3678888885 889999999999999999876543 344444444433
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-39 Score=285.91 Aligned_cols=311 Identities=14% Similarity=0.131 Sum_probs=226.6
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc---eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE---KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
.+.+.+|.+.|++++|+|++++||+|+.||.|++||+.++.. ....+.+|...|.+++|+|..++.+|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 456789999999999999999999999999999999987642 33445789999999999982238999999999999
Q ss_pred EEEEcccCce-------eeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC--CCC
Q 013644 84 RLGQIFEDGR-------MDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE--NSK 152 (439)
Q Consensus 84 ~iw~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~ 152 (439)
++||+.++.. .....+..|...|.+++|+|+ +. ++++++.|+.|++||+++++....+....... ...
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999987632 234567789999999999999 76 68899999999999999887665544221111 111
Q ss_pred CCCceeeeEEEeecCC--CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC---
Q 013644 153 QPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--- 227 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 227 (439)
...+...+.+++|+|+ ++.++++++.++.+.+|+...++. ........|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------------HVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------------EEEEECCCCCSCEEEEEECCCSSCS
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------------eeeeecCCCCcceeEEEECCCCCCc
Confidence 1236678999999997 348999999999998888766542 1233346788999999999998
Q ss_pred -CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe----CCCCeEEE
Q 013644 228 -ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG----SDCGHLFI 301 (439)
Q Consensus 228 -~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~----~~dg~i~i 301 (439)
++|++++ |+.|++||+..+... .....+.. ...... .++....++.+ .....+.+
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~----------------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSP----------------LASEESLT--NSNMFD-NSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCc----------------cccCCccc--ceeccC-CCcccccccccccccccceeeee
Confidence 7888886 999999999875211 11111111 112122 23333333333 34456677
Q ss_pred EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 302 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..++
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 7777788899999999999999999999999999999999999998654
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-40 Score=302.21 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=217.2
Q ss_pred eeeeccccceEEEEECCC------CCEEEEecCCCeEEEEeCCCCcce----------eeeecCCcccEEEEEEeecCCC
Q 013644 8 GKLHGHKGCVNAVEFNST------GDFLVSGSDDKLVIFWDWKDRREK----------FSYLSGHLDNIFQTRIMPFTDD 71 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~------~~~l~t~~~dg~i~iw~~~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~ 71 (439)
..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... ...+.+|...|++++|+| +
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~- 277 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P- 277 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-
Confidence 457788899999999997 579999999999999999776421 124578999999999997 5
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEE--EEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKL--AVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
..|++|+.||+|++||++++... ...+.+|...|.++ +|+|++..+|++++.|++|++||+++++....+....
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--- 353 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--- 353 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC---
T ss_pred CeEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc---
Confidence 48999999999999999876432 24577899999999 5677763488999999999999999887766654321
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
....|.+++|+|++ ..+++++.|+.|++||++++.. . ..+.+|...|++++|+|++++
T Consensus 354 ------~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~--------------~-~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 354 ------RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA--------------V-HPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp ------SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC--------------C-EEEEECSSCEEEEECCSSCCB
T ss_pred ------ccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc--------------c-eeeecCCCceEEEEeCCCCCe
Confidence 11237889999987 6899999999999999987652 1 123578999999999999999
Q ss_pred EEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC---CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 230 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 230 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
|++++ |+.|++||+... ....+... .....+.+++ |+|+++.+.. ..+ +.+|+..
T Consensus 412 l~Sgs~Dgtv~lwd~~~~-----------------~~~~~~~~~~~~~~~~v~~v~-~sp~g~~~~~-~~~--~~~~~~~ 470 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR-----------------LLHGIKNSSATQKSLRLWKWD-YSIKDDKYRI-DSS--YEVYPLT 470 (524)
T ss_dssp CEEEETTTEEECCBSCSS-----------------TTTCC------CCCCEEEECB-CCSSSCEEEE-CCC--CCCCC--
T ss_pred EEEEECCCEEEEEechHh-----------------hccccccCccceeeeEEEEec-cCCCCCeEEc-cCC--ceecccc
Confidence 99887 999999997543 11111110 0111366778 8999985532 222 3344332
Q ss_pred -CCceeEeecccccceEEEeecCCCc---EEEEEecCCeEEEeccCCC
Q 013644 306 -GGKLVRLMVGDRHVVNQLEPHPHIP---MFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 306 -~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 349 (439)
++.++..+.+|...|.+++|+|+++ +||+|+.||.|+||++...
T Consensus 471 ~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 471 VNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred cCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 4677888999999999999999965 9999999999999998654
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.7e-40 Score=297.69 Aligned_cols=298 Identities=10% Similarity=0.095 Sum_probs=225.7
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFD 132 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 132 (439)
..+|...|++++|+|. ++.+||+|+.||+|+|||+.+++......+.+|.+.|++++|+|.+..+|++++.||+|++||
T Consensus 115 ~~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 115 AAPFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4578889999999982 567899999999999999988776655667889999999999985444788999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (439)
++++........ . .+...+.+++|+|++ .+|++|+.||.|++||++... ...+.
T Consensus 194 ~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~----------------~~~~~ 247 (435)
T 4e54_B 194 FKGNILRVFASS-D--------TINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE----------------LWNLR 247 (435)
T ss_dssp TTSCEEEEEECC-S--------SCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB----------------CCCSB
T ss_pred ccCCceeEEecc-C--------CCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce----------------eEEEe
Confidence 987543322211 1 034457889999987 899999999999999987532 12236
Q ss_pred CCCccEEEEEEccCCC-EEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 213 KNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 213 ~~~~~i~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
.|...|.+++|+|++. ++++++ |+.|++||+++.... .......+|... |.+++ |+|+|++|
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-------------~~~~~~~~h~~~--v~~~~-~spdg~~l 311 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-------------ASFLYSLPHRHP--VNAAC-FSPDGARL 311 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-------------SCCSBCCBCSSC--EEECC-BCTTSSEE
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-------------ceEEEeeecccc--cccee-ECCCCCee
Confidence 7889999999999985 677775 999999999876311 122233456554 89999 89999999
Q ss_pred EEeCCCCeEEEEecCCCceeEeeccccc------ceEEEeecCCCcEEEEEe------------cCCeEEEeccCCCCC-
Q 013644 291 MSGSDCGHLFIWKKKGGKLVRLMVGDRH------VVNQLEPHPHIPMFATCG------------IEKTVKLWAPMPTDF- 351 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~~------------~dg~i~iw~~~~~~~- 351 (439)
++++.||.|++||+.+++....+..|.. .+....|+|++.++++++ .++.|++|+..+++.
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 9999999999999999988877766542 234556777777776664 245799999988775
Q ss_pred CC-CCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 352 PP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 352 ~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
.. ..+|...+.....+++++..+++++ |+.|++|++++++..
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 22 3356666666655677777888876 889999999887543
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=283.09 Aligned_cols=301 Identities=13% Similarity=0.172 Sum_probs=249.6
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
.+.+|...|++++|+| ++++|++++.||.|++||+.+++.. ..+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTK-YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence 3679999999999999 9999999999999999999887765 55888999999999999998 67799999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-----ceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
|+.+++....+. +...+.+++|+|++ .++++++.+ +.|++||+............. ..
T Consensus 102 d~~~~~~~~~~~------------~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----~~ 164 (369)
T 3zwl_B 102 DVSNGQCVATWK------------SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVS----EE 164 (369)
T ss_dssp ETTTCCEEEEEE------------CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC----SS
T ss_pred ECCCCcEEEEee------------cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccc----cc
Confidence 999998877765 35569999999987 889999888 999999998865432211100 01
Q ss_pred ccccccCCCc--cEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee
Q 013644 207 PRHLIGKNNI--HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 207 ~~~~~~~~~~--~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
.......+.. .+.+++|+|++++|++++ ++.|++||+.+.. .....+..|... +.+++ |
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~--v~~~~-~ 226 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---------------EYVDSIDLHEKS--ISDMQ-F 226 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---------------EEEEEEECCSSC--EEEEE-E
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---------------EeEEEEecCCCc--eeEEE-E
Confidence 1112233444 899999999999999886 9999999998631 456677777765 99999 8
Q ss_pred CCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCC--------------eEEEeccCCC
Q 013644 284 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--------------TVKLWAPMPT 349 (439)
Q Consensus 284 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iw~~~~~ 349 (439)
+|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++++.++ .+++|++..+
T Consensus 227 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 9999999999999999999999999988887 678899999999999999999988 8999999877
Q ss_pred CC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 350 DF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 350 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
+. ..+.+|...+.... +.+++..+++++.||.|++|++.++...
T Consensus 306 ~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 306 EEIGRVQGHFGPLNTVA-ISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp CEEEEEECCSSCEEEEE-ECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred cchhheecccCcEEEEE-ECCCCCEEEEEcCCCeEEEEECccccch
Confidence 65 45566766666655 4557789999999999999999887543
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-39 Score=290.67 Aligned_cols=297 Identities=11% Similarity=0.104 Sum_probs=237.5
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc----eeeeEEecCCCCceEEEEEccC----C---CcE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG----RMDTKRLGKHQGRVYKLAVEPG----S---PYI 118 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~~i~~~~~----~---~~~ 118 (439)
...+.+|...|++++|+| ++|++++.||.|++|++.+.+ ......+.+|...|.+++|+|+ + . +
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~ 83 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-L 83 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-E
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-E
Confidence 445679999999999985 799999999999999998876 1223557789999999999999 7 6 6
Q ss_pred EEEeCCCCcEEEEEccCCCc-----eeeEEeeccCCCCCCCCc--eeeeEEEeec----CCCCcE-EEEeecCceEEEEe
Q 013644 119 IYSCGEDGFVQHFDLRSDSA-----TRLFYCSSFSENSKQPMN--SIRLNAIVID----PRNPNY-FAVGGSDEYARVYD 186 (439)
Q Consensus 119 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~v~~~~~~----~~~~~~-l~~~~~dg~i~i~d 186 (439)
|++++.|+.|++||+.+++. ...+.... .+ ...|.+++|+ |++ .+ |++++.||.|++||
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLD--------SDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWK 154 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSC--------TTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccc--------cccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEe
Confidence 78999999999999998876 44443210 01 4679999999 887 67 99999999999999
Q ss_pred CcC------CcccCCCCCCCCcccccccccc-------cCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCC
Q 013644 187 IRK------CHWYSPISSDTPVDTFCPRHLI-------GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPL 252 (439)
Q Consensus 187 ~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 252 (439)
++. ++.+. +.+...+ ..|...|.+++|+|++ ++++++ ++.|++||+.++
T Consensus 155 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------ 217 (397)
T 1sq9_A 155 FHPFADESNSLTLN----------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL------ 217 (397)
T ss_dssp EESSSSHHHHTTTC----------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT------
T ss_pred CCccccccccceee----------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC------
Confidence 987 44221 0111111 4478889999999999 888886 999999999876
Q ss_pred CCCcccccccccceeEeC---C---CCcceeeeEEeeCCCCceEEEeCCC---CeEEEEecCCCceeEeecc--------
Q 013644 253 SLSPEDLQKREEPQVYSG---H---RNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVG-------- 315 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~---~---~~~~~v~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------- 315 (439)
+....+.. | ... +.+++ |+|++++|++++.| |.|++||+.+++.+..+.+
T Consensus 218 ----------~~~~~~~~~~~h~~~~~~--i~~i~-~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 284 (397)
T 1sq9_A 218 ----------RPLYNFESQHSMINNSNS--IRSVK-FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284 (397)
T ss_dssp ----------EEEEEEECCC---CCCCC--EEEEE-ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred ----------ceeEEEeccccccccCCc--cceEE-ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc
Confidence 56667776 6 554 99999 89999999999999 9999999999999999998
Q ss_pred -----cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCC------Cc---------------hhhhhhhhccc
Q 013644 316 -----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP------DN---------------AEKIMKANKQG 368 (439)
Q Consensus 316 -----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~------~~---------------~~~~~~~~~~~ 368 (439)
|...|.+++|+|++++|++++.||.|++|++..++. ..+. .| ...+..+.+ .
T Consensus 285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~-~ 363 (397)
T 1sq9_A 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF-L 363 (397)
T ss_dssp -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE-E
T ss_pred ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe-c
Confidence 999999999999999999999999999999987654 3343 44 555655553 3
Q ss_pred cCc----------ceEEEeCCCcEEEEEEeccc
Q 013644 369 RED----------HSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 369 ~~~----------~~~~~~s~dg~v~~w~~~~~ 391 (439)
.+. ..+++++.||.|++|++.++
T Consensus 364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 343 68999999999999999876
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.9e-39 Score=286.64 Aligned_cols=294 Identities=10% Similarity=0.072 Sum_probs=227.1
Q ss_pred eeeecCCcccEEEEEEeecCCC-cEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDD-RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
...+.+|...|++++|+| ++ .+|++|+.||.|++||+.+++........+|...|.+++|+|++..+|++++.|+.|
T Consensus 66 ~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEECCCSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred EEeccCCCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 334578999999999999 88 899999999999999998877765544557999999999999543478899999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
++||++. .....+.... .+...|.+++|+|++ .+|++|+.|+.|++||++. + ..
T Consensus 144 ~iwd~~~-~~~~~~~~~~--------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~---------------~~ 197 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTD--------SWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-H---------------EI 197 (383)
T ss_dssp EEEETTS-CEEEEEECCC--------CSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-C---------------EE
T ss_pred EEEECCC-CceEEEeccC--------CCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-C---------------EE
Confidence 9999996 3333333211 134679999999987 8999999999999999853 2 12
Q ss_pred ccccCCCccEEEEEEccCCC-EEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-
Q 013644 209 HLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP- 285 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~- 285 (439)
..+..|...|.+++|+|+++ +|++++ |+.|++||+.+.... ......+ +|... +.+++ |+|
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~~~~~~-~~~~~--v~~~~-~s~~ 261 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------------NSYIAEM-PHEKP--VNAAY-FNPT 261 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST------------TCEEEEE-ECSSC--EEEEE-ECTT
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc------------cceEEEe-cCCCc--eEEEE-EcCC
Confidence 23367889999999999998 888876 999999999874211 0223333 45554 99999 899
Q ss_pred CCceEEEeCCCCeEEEEecCCCceeEeecccc-----------------cceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 286 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-----------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 286 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----------------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
++++|++++.|+.|++||+.+++.+..+.+|. ..+..++|+|++++ +++.||.|++||+.+
T Consensus 262 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence 99999999999999999999988777766543 23445667777766 778999999999987
Q ss_pred CCC-CCCCCch-hhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 349 TDF-PPLPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 349 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
++. ..+.++. ..+.....+..++..+++++ ||.|++|++++
T Consensus 340 ~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 765 4444322 33344434666777888887 99999999864
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.7e-39 Score=306.63 Aligned_cols=293 Identities=16% Similarity=0.232 Sum_probs=233.3
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce---eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR---MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
..+.+|.+.|++++|+|. ++++|++|+.|++|++|++.+... .....+.+|...|.+++|+|+++ +|++|+.|++
T Consensus 376 ~~l~~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred hhcccCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-EEEEEeCCCc
Confidence 346799999999999981 357999999999999999976432 23456889999999999999998 6789999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
|++||+.++.....+.. |...|.+++|+|++ .+|++|+.|+.|++||....... ..
T Consensus 454 v~vwd~~~~~~~~~~~~-----------h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~------------~~ 509 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVG-----------HTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY------------TI 509 (694)
T ss_dssp EEEEETTTTEEEEEEEC-----------CSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE------------EE
T ss_pred EEEEECCCCcceeEEeC-----------CCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce------------ee
Confidence 99999999887776654 67789999999987 89999999999999998653211 11
Q ss_pred cccccCCCccEEEEEEccCC--CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC
Q 013644 208 RHLIGKNNIHITGLAYSNTS--ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 284 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 284 (439)
.....+|...|.+++|+|++ ..+++++ |+.|++||+.+. +....+.+|... |.+++ |+
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----------------~~~~~~~~h~~~--v~~v~-~s 570 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----------------KLRSTLAGHTGY--VSTVA-VS 570 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC----------------CEEEEECCCSSC--EEEEE-EC
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC----------------cEEEEEcCCCCC--EEEEE-Ee
Confidence 11224678889999999987 4677776 999999999876 566778888876 99999 89
Q ss_pred CCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCch-----
Q 013644 285 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA----- 358 (439)
Q Consensus 285 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~----- 358 (439)
|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++ |+.|++||+.+++. ..+..+.
T Consensus 571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp TTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc
Confidence 9999999999999999999999999888764 46899999999998887765 66799999987653 1111000
Q ss_pred -----------hhh--hhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 359 -----------EKI--MKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 359 -----------~~~--~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
..+ .....+++++..+++++.||.|++|++.+
T Consensus 649 ~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 000 11123566788999999999999999853
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=282.15 Aligned_cols=300 Identities=14% Similarity=0.132 Sum_probs=227.0
Q ss_pred CcceeeeecCCcccEEEEEEeecCCCcEE-EEecC---CCcEEEEEcccCceeeeEEecCCCCceEEEEEccC---CCcE
Q 013644 46 RREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSA---DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG---SPYI 118 (439)
Q Consensus 46 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~ 118 (439)
.+.+...+.+|...|.+++|+| ++..+ ++++. |+.|++|++.+++..... ..+|...|.+++|+|+ +. +
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p--~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~ 82 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVP--CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQR-Y 82 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECT--TSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTC-C
T ss_pred hHHhhhhccCCCCceEEEEEcC--CCceEEEecCccCCCcEEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCc-e
Confidence 3444555678999999999999 88655 56665 899999999887665433 3368999999999998 45 6
Q ss_pred EEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeEEEe------ecCCCCcEEEEeecCceEEEEeCcCCc
Q 013644 119 IYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIV------IDPRNPNYFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 119 l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~dg~i~i~d~~~~~ 191 (439)
|++++.||.|++||+.+++ ....+.. |...|.++. |+|++ .+|++++.|+.|++||+++++
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKG-----------HKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECC-----------CSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCS
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEe-----------cccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCC
Confidence 7899999999999999887 5554432 677799984 56766 799999999999999998765
Q ss_pred ccCCCCCCCCcccccccccccCCCccEEEEE----EccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccce
Q 013644 192 WYSPISSDTPVDTFCPRHLIGKNNIHITGLA----YSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ 266 (439)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
. +...+. .....+...+.+++ |+|+++++++++ ++.|++||++++ +. .
T Consensus 151 ~--------~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~-~ 203 (357)
T 3i2n_A 151 D--------PVANME--PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------AL-R 203 (357)
T ss_dssp S--------CSEEEC--CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------EE-E
T ss_pred C--------cceecc--ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------ce-e
Confidence 1 011110 00112244788888 788999999887 899999999876 22 3
Q ss_pred eEeCCCCcceeeeEEeeCC---CCceEEEeCCCCeEEEEecCCCceeEeec-----ccccceEEEeecCCCc-EEEEEec
Q 013644 267 VYSGHRNSQTVKGVNFFGP---NDEYVMSGSDCGHLFIWKKKGGKLVRLMV-----GDRHVVNQLEPHPHIP-MFATCGI 337 (439)
Q Consensus 267 ~~~~~~~~~~v~~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~s~~~~-~l~s~~~ 337 (439)
....|... +.+++ |+| ++++|++++.||.|++||+.+++.+..+. +|...|++++|+|+++ +|++++.
T Consensus 204 ~~~~~~~~--v~~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 280 (357)
T 3i2n_A 204 WETNIKNG--VCSLE-FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG 280 (357)
T ss_dssp EEEECSSC--EEEEE-ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred eecCCCCc--eEEEE-cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC
Confidence 33445444 89999 899 99999999999999999998887665554 8999999999999999 8999999
Q ss_pred CCeEEEeccCCCCCC--------------------CCCCchhhhhhhhccccCcceEE-EeCCCcEEEEEEecccc
Q 013644 338 EKTVKLWAPMPTDFP--------------------PLPDNAEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 338 dg~i~iw~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~v~~w~~~~~~ 392 (439)
||.|++|++...... .+.+|...+.... +.+++..++ +++.||.+++|++.+.+
T Consensus 281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD-WSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE-ECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE-EcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999999754322 2334555665555 445555565 89999999999998764
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-40 Score=292.09 Aligned_cols=262 Identities=15% Similarity=0.107 Sum_probs=197.4
Q ss_pred cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 133 (439)
..+.++|++++|+| ++++|++++.|+.|++|++.++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+
T Consensus 8 ~~~~~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 8 HILPKPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EECSSCCSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEEEC--
T ss_pred ecCCCcEEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEc
Confidence 34667999999999 99999999999999999998774333456889999999999999998 5779999999999999
Q ss_pred cCCC---ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 134 RSDS---ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 134 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
.+++ ....+. .|...|.+++|+|++ ++|++++.|+.|++||++.++.. .....
T Consensus 85 ~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~ 140 (377)
T 3dwl_C 85 RPDGTWKQTLVLL-----------RLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDW------------WVSKH 140 (377)
T ss_dssp ----CCCCEEECC-----------CCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----C------------CCCEE
T ss_pred CCCCceeeeeEec-----------ccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccc------------eeeeE
Confidence 9876 222221 167789999999986 89999999999999999876421 11122
Q ss_pred ccC-CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccc--ccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 211 IGK-NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 211 ~~~-~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
+.. |...|.+++|+|++++|++++ |+.|++||+............+.. .........+ +|... +.+++ |+|+
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--v~~~~-~sp~ 216 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW--VHAVG-FSPS 216 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS--EEEEE-ECTT
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce--EEEEE-ECCC
Confidence 234 889999999999999999887 999999999754321111111110 1112333444 56554 99999 8999
Q ss_pred CceEEEeCCCCeEEEEecCCCce----eEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 287 DEYVMSGSDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
+++|++++.||.|++||+.+++. +..+.+|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99999999999999999999987 88889999999999999999999999877766 66554
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-40 Score=297.51 Aligned_cols=322 Identities=11% Similarity=0.189 Sum_probs=235.6
Q ss_pred EECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc---Cceee-e
Q 013644 21 EFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE---DGRMD-T 96 (439)
Q Consensus 21 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~---~~~~~-~ 96 (439)
.|+|+++.+++++ .|+. +++.+..+..+|.+.|++++|+|. ++.+|++|+.||+|++||+.+ +.... .
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPG-ETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECS-SSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCC-CCCEEEEecCCceEEEeECcccccCccccee
Confidence 3567777777665 4874 445555554899999999999973 578999999999999999976 43221 2
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc---CCCceeeEEeeccCCCCCCC-CceeeeEEEe--ecCCCC
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR---SDSATRLFYCSSFSENSKQP-MNSIRLNAIV--IDPRNP 170 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~--~~~~~~ 170 (439)
..+ .|...|.+++|+|+++ +|++++.||.|++||+. .++..............-.+ .+...+.++. +++++
T Consensus 106 ~~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (437)
T 3gre_A 106 LTY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK- 182 (437)
T ss_dssp EEE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-
T ss_pred eec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-
Confidence 222 5899999999999987 67899999999999995 55554443322100000000 0233455555 55665
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC--CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK--NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGL 247 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~ 247 (439)
.+|++|+.|+.|++||+++++.+. .+.. |...|++++|+|++++|++++ |+.|++||++++
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~---------------~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~- 246 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQ---------------IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN- 246 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEE---------------EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeE---------------EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-
Confidence 899999999999999999865321 1233 778999999999999999887 999999999876
Q ss_pred CCCCCCCCcccccccccceeEe-CCCCcceeeeEEe---eCCCCceEEEeCCCCeEEEEecCCCceeEeecc--------
Q 013644 248 GPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNF---FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-------- 315 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~---~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------- 315 (439)
.....+. .|.. .|.++++ +++++++|++|+.||.|++||+.+++++..+.+
T Consensus 247 ---------------~~~~~~~~~~~~--~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 247 ---------------VLIRSWSFGDHA--PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp ---------------EEEEEEBCTTCE--EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred ---------------cEEEEEecCCCC--ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 4555554 4443 4888842 456789999999999999999999988777664
Q ss_pred ------------------cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCC--------------------
Q 013644 316 ------------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-------------------- 356 (439)
Q Consensus 316 ------------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~-------------------- 356 (439)
|...|++++|+ ++++|++++.||.|++|++.+++. ..+.+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTML 388 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEE
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEE
Confidence 44568888888 778999999999999999987653 22222
Q ss_pred -----------------chhhhhhhhcccc-CcceEEEeCCCcEEEEEE
Q 013644 357 -----------------NAEKIMKANKQGR-EDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 357 -----------------~~~~~~~~~~~~~-~~~~~~~~s~dg~v~~w~ 387 (439)
|...+..+.+... +...+++++.||.|++|+
T Consensus 389 ~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 389 LRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4444544443333 356899999999999994
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.3e-38 Score=285.57 Aligned_cols=279 Identities=21% Similarity=0.365 Sum_probs=229.9
Q ss_pred eeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
..+|...|+++++ ++++|++|+.||.|++||+.+++.... +.+|...|.+++| ++++|++|+.||+|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI-LTGHTGSVLCLQY----DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE-ECCCSSCEEEEEC----CSSEEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE-EcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEECC
Confidence 3456778999887 789999999999999999998876555 5799999999988 57899999999999999998
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
+++.. ..+.+|...|.+++|+++ .+++++.||.|++||++++.......... .|...|.+++|. +
T Consensus 202 ~~~~~--~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~--~ 266 (435)
T 1p22_A 202 TGEML--NTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLV--------GHRAAVNVVDFD--D 266 (435)
T ss_dssp SCCEE--EEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEEC--------CCSSCEEEEEEE--T
T ss_pred CCcEE--EEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEec--------CCCCcEEEEEeC--C
Confidence 88765 557889999999999753 68899999999999999887653222111 166789999993 3
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 248 (439)
.++++|+.||.|++||+++++.+ ..+..|...|.++.++ +.++++++ |+.|++||+.++
T Consensus 267 -~~l~s~~~dg~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-- 326 (435)
T 1p22_A 267 -KYIVSASGDRTIKVWNTSTCEFV---------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-- 326 (435)
T ss_dssp -TEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--
T ss_pred -CEEEEEeCCCeEEEEECCcCcEE---------------EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC--
Confidence 79999999999999999886532 2235778889999984 56777776 999999999877
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc---------eeEeecccccc
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---------LVRLMVGDRHV 319 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~ 319 (439)
.....+.+|... +.++. + ++++|++|+.||.|++||+.+++ ++..+.+|...
T Consensus 327 --------------~~~~~~~~h~~~--v~~~~-~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~ 387 (435)
T 1p22_A 327 --------------ACLRVLEGHEEL--VRCIR-F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387 (435)
T ss_dssp --------------CEEEEECCCSSC--EEEEE-C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred --------------CEEEEEeCCcCc--EEEEE-e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence 567788888776 88888 4 78999999999999999998776 78889999999
Q ss_pred eEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 320 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
|.+++| ++++|++++.||.|++|++.+...
T Consensus 388 v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 388 VFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp CCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred eEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999 778999999999999999976554
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=281.18 Aligned_cols=263 Identities=17% Similarity=0.242 Sum_probs=210.4
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcE
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQV 83 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 83 (439)
+++..+++|.+.|++++|+|++++||+|+.||.|+||++.... .....+.+|...|++++|+|..++.+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4577899999999999999999999999999999999997432 233446789999999999981128999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
++||+.+++......+..|...|.+++|+|+ +. +|++++.|+.|++||++.+.......... |...|.
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~~~~v~ 151 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDA---------HAIGVN 151 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEEC---------CTTCEE
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecC---------CCCceE
Confidence 9999988875555678889999999999999 76 68899999999999999875444332211 566799
Q ss_pred EEeecCC------------CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 162 AIVIDPR------------NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 162 ~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
+++|+|. ++.+|++++.|+.|++||++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------------------------- 194 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------------------------------- 194 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-------------------------------------
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-------------------------------------
Confidence 9999994 236777888888888888765320
Q ss_pred EEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC---CceEEEeCCCCeEEEEecCC
Q 013644 230 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 230 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~---~~~l~~~~~dg~i~iwd~~~ 306 (439)
.......+.+|... |.+++ |+|+ +++|++++.||.|++||+.+
T Consensus 195 -------------------------------~~~~~~~~~~h~~~--v~~~~-~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 195 -------------------------------TYVLESTLEGHSDW--VRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -------------------------------EEEEEEEECCCSSC--EEEEE-ECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred -------------------------------ceeeEEEEecccCc--EeEEE-ECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 00122345566654 88999 8999 89999999999999999988
Q ss_pred Cc-----eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCC
Q 013644 307 GK-----LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 307 ~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+. .+.....|...|.+++|+|++++|++++.||.|++|++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 64 2223334788999999999999999999999999999863
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-38 Score=282.92 Aligned_cols=311 Identities=15% Similarity=0.156 Sum_probs=232.1
Q ss_pred eeecCCcccEEEEEEeec--CCCcEEEEecCCCcEEEEEcccCceeeeEE---ecCCCCceEEEEEccCCC---cEEEEe
Q 013644 51 SYLSGHLDNIFQTRIMPF--TDDRKIITSSADGQVRLGQIFEDGRMDTKR---LGKHQGRVYKLAVEPGSP---YIIYSC 122 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~---~~l~s~ 122 (439)
.+..+|...|++++|+|. .....+++++.++.|++|++.+++...... ...|...|.+++|+|++. .+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455689999999999982 124566777777799999998766543221 223668899999999942 378899
Q ss_pred CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCc
Q 013644 123 GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 202 (439)
Q Consensus 123 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 202 (439)
+.||.|++||+.+++....+.. |...|.+++|+|+++.+|++++.||.|++||+++++....
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------- 153 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVG-----------HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI------- 153 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEES-----------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE-------
T ss_pred cCCCEEEEEEchhceEeeeecC-----------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE-------
Confidence 9999999999999888776653 6778999999994448999999999999999987653211
Q ss_pred ccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCC----CCCc--------ccccccccceeEe
Q 013644 203 DTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPL----SLSP--------EDLQKREEPQVYS 269 (439)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~ 269 (439)
......|...|.+++|+|++++|++++ |+.|++||+.++...... ...+ .............
T Consensus 154 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 154 -----FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp -----ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred -----ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 111256889999999999999999886 999999999765210000 0000 0000001112223
Q ss_pred CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce--------------eEeecccccceEEEeecCC--CcEEE
Q 013644 270 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--------------VRLMVGDRHVVNQLEPHPH--IPMFA 333 (439)
Q Consensus 270 ~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~h~~~v~~~~~s~~--~~~l~ 333 (439)
+|... |.++. |+ +++|++++.||.|++||+.+++. +..+.+|...|++++|+|+ +++|+
T Consensus 229 ~~~~~--v~~~~-~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 229 IHRNY--VDCVR-WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp SCSSC--CCEEE-EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred CCcce--EEEEE-Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 35554 89999 55 78999999999999999987644 7788889999999999999 99999
Q ss_pred EEecCCeEEEeccCCCCCC-----CCCCc--hhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 334 TCGIEKTVKLWAPMPTDFP-----PLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 334 s~~~dg~i~iw~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
+++.||.|++|++..++.. .+..| ...+..+. +..++..+++++.||.|++|++.+
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS-FSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEE-eCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999999887542 34444 45555554 566788999999999999999853
No 88
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-37 Score=304.47 Aligned_cols=340 Identities=12% Similarity=0.134 Sum_probs=261.6
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+.+.++.+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+.. +.+|...|++++|+| ++.+|++++.||.
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHP--TKPYVLSGSDDLT 120 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECS--SSSEEEEEETTSE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EecCCCCEEEEEEeC--CCCEEEEEcCCCE
Confidence 4557788999999999999999999999999999999999999877665 478999999999999 9999999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEcc-CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
|++|++.++... ...+.+|...|.+++|+| ++. .+++++.||.|++||+.++.....+... +...+.
T Consensus 121 i~vw~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~----------~~~~v~ 188 (814)
T 3mkq_A 121 VKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTG----------QERGVN 188 (814)
T ss_dssp EEEEEGGGTSEE-EEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEEECC----------CTTCCC
T ss_pred EEEEECCCCceE-EEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEEecC----------CCCCEE
Confidence 999999876332 355778999999999999 555 7889999999999999888776665432 235689
Q ss_pred EEeecC--CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeE
Q 013644 162 AIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 238 (439)
Q Consensus 162 ~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i 238 (439)
+++|+| ++ .++++++.||.|++||+.+++. ...+..|...|.+++|+|++.++++++ |+.|
T Consensus 189 ~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 189 YVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC---------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp EEEECCSTTC-CEEEEECTTSEEEEEETTTTEE---------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred EEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE---------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 999998 66 7999999999999999987652 222356788999999999999999887 9999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc--eEEEeCCCCeEEEEecCCCceeE-----
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGGKLVR----- 311 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~----- 311 (439)
++||+.++ +....+..+... +.+++ |+|+++ +++++ .++.+.+|++.......
T Consensus 253 ~vwd~~~~----------------~~~~~~~~~~~~--v~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 312 (814)
T 3mkq_A 253 KIWNSSTY----------------KVEKTLNVGLER--SWCIA-THPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPV 312 (814)
T ss_dssp EEEETTTC----------------SEEEEECCSSSS--EEEEE-ECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSS
T ss_pred EEEECCCC----------------cEEEEeecCCCc--EEEEE-EccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCC
Confidence 99999876 456667777654 88999 799987 35554 46778888865432111
Q ss_pred --------------------------------------eecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC--
Q 013644 312 --------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-- 351 (439)
Q Consensus 312 --------------------------------------~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-- 351 (439)
.+..+...+.+++|+|+|++|++++ |+.+.+|++.....
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~ 391 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA 391 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC
Confidence 1122344678899999999988887 88999998643211
Q ss_pred ----------------------------CCCCCchhhhhhhhccccCc---ceEEEeCCCcEEEEEEecccceee
Q 013644 352 ----------------------------PPLPDNAEKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 352 ----------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
..+.++...+.... +..++ ..+++++.||.|++|++.+++...
T Consensus 392 ~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~-~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~ 465 (814)
T 3mkq_A 392 FGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMH-SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR 465 (814)
T ss_dssp EEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCS-SCCCEEECSSSEEEEETTEEEEECTTTCCEEE
T ss_pred CCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCC-cCccceecceEEEEecCCEEEEEECCcCcEEE
Confidence 00111222222222 23333 366777778889999888776654
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=269.37 Aligned_cols=294 Identities=16% Similarity=0.218 Sum_probs=234.0
Q ss_pred eCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEE
Q 013644 42 DWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYS 121 (439)
Q Consensus 42 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 121 (439)
|..+.......+.+|...|++++| | ++++|++++.||.|++||+.+.... ..+..|...|.+++|+|+++ ++++
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~~ 76 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLG--TVVYTGQGFLNSVCYDSEKE-LLLF 76 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEE--EEEEECSSCEEEEEEETTTT-EEEE
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEE--EEeecCCccEEEEEECCCCC-EEEE
Confidence 334444556667899999999999 8 8999999999999999999776554 44677899999999999998 6789
Q ss_pred eCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCC
Q 013644 122 CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP 201 (439)
Q Consensus 122 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 201 (439)
++.|+.|++|++............ ..|...|.+++|+ + .++++++.|+.|++||.. +
T Consensus 77 ~~~dg~i~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~~--~---------- 133 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGEDPLYTL--------IGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKEG--S---------- 133 (313)
T ss_dssp EETTSCEEEEETTCCTTSCC-CEE--------CCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETT--E----------
T ss_pred ecCCCeEEEEEeeecCCCCcccch--------hhcccCEEEEEec--C-CEEEEEeCCCCEEEEcCC--c----------
Confidence 999999999999876432222111 1167789999994 3 699999999999999922 1
Q ss_pred cccccccccccCCCccEEEEEEcc-CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeC-CCCcceee
Q 013644 202 VDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVK 278 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 278 (439)
.......|...+.++.|.| ++.++++++ ++.|++||.. .....+.. |.. .+.
T Consensus 134 -----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~--~i~ 188 (313)
T 3odt_A 134 -----LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND------------------KVIKTFSGIHND--VVR 188 (313)
T ss_dssp -----EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT------------------EEEEEECSSCSS--CEE
T ss_pred -----EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC------------------ceEEEEeccCcc--cEE
Confidence 2233467888999999998 888888886 9999999943 34455555 444 488
Q ss_pred eEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC-CCCCCc
Q 013644 279 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN 357 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~ 357 (439)
+++ ++|++. +++++.||.|++||+.+++++..+.+|...|++++|+|++ .|++++.||.|++|++.+++. ..+..+
T Consensus 189 ~~~-~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 265 (313)
T 3odt_A 189 HLA-VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP 265 (313)
T ss_dssp EEE-EEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred EEE-EcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence 998 789988 8999999999999999999999999999999999999999 688999999999999988765 445555
Q ss_pred hhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 358 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
...+....+ .+++. +++++.||.+++|++.+++..
T Consensus 266 ~~~i~~~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 266 AISIWSVDC-MSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SSCEEEEEE-CTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CceEEEEEE-ccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 555655553 33444 677899999999999887655
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.4e-37 Score=279.38 Aligned_cols=285 Identities=20% Similarity=0.299 Sum_probs=237.6
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ 82 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 82 (439)
+.+++..+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.+.. +.+|...|.++.|+ ++.|++++.||+
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~----~~~l~s~s~dg~ 220 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT-LYGHTSTVRCMHLH----EKRVVSGSRDAT 220 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEE----TTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE-ECCCCCcEEEEEec----CCEEEEEeCCCE
Confidence 456778899999999999998 66999999999999999999876655 57999999999995 468999999999
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
|++||+.+++.. ..+.+|...|.+++| ++. .+++++.||.|++||+++++....+.. |...+.+
T Consensus 221 i~~wd~~~~~~~--~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~ 284 (445)
T 2ovr_B 221 LRVWDIETGQCL--HVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQG-----------HTNRVYS 284 (445)
T ss_dssp EEEEESSSCCEE--EEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECC-----------CSSCEEE
T ss_pred EEEEECCCCcEE--EEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecC-----------CCCceEE
Confidence 999999887765 457789999999999 555 577999999999999999887766543 5667999
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 241 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~ 241 (439)
+.| ++ .++++|+.|+.|++||+++++.+ ..+..|...+.++.++ +.++++++ |+.|++|
T Consensus 285 ~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 285 LQF--DG-IHVVSGSLDTSIRVWDVETGNCI---------------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 344 (445)
T ss_dssp EEE--CS-SEEEEEETTSCEEEEETTTCCEE---------------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred EEE--CC-CEEEEEeCCCeEEEEECCCCCEE---------------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEE
Confidence 999 33 79999999999999999986532 2235677778887774 56777776 9999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCC-CcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee-----cc
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-----VG 315 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~ 315 (439)
|+.++ +....+..+. ....+.++. + ++++|++|+.||.|++||+.+++.+..+ .+
T Consensus 345 d~~~~----------------~~~~~~~~~~~~~~~v~~~~-~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 405 (445)
T 2ovr_B 345 DIKTG----------------QCLQTLQGPNKHQSAVTCLQ-F--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405 (445)
T ss_dssp ETTTC----------------CEEEEECSTTSCSSCEEEEE-E--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred ECCCC----------------cEEEEEccCCCCCCCEEEEE-E--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCC
Confidence 99876 4556666522 223488888 4 4789999999999999999999998887 46
Q ss_pred cccceEEEeecCCCcEEEEEecCCe----EEEeccCCC
Q 013644 316 DRHVVNQLEPHPHIPMFATCGIEKT----VKLWAPMPT 349 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s~~~dg~----i~iw~~~~~ 349 (439)
|.+.|++++|+|++.+|++++.||+ |.+||+...
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 7889999999999999999999997 999998653
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.3e-37 Score=279.93 Aligned_cols=288 Identities=20% Similarity=0.253 Sum_probs=233.2
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
++.+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+.. +.+|...|.+++|++.+++.+|++++.|+
T Consensus 150 ~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE-ECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 3456788899999999999999988 899999999999999999876555 57899999999999644789999999999
Q ss_pred cEEEEEcccCceee---------------------eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCcee
Q 013644 82 QVRLGQIFEDGRMD---------------------TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATR 140 (439)
Q Consensus 82 ~i~iw~~~~~~~~~---------------------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 140 (439)
+|++||+.+..... ...+.+|...|.++ +++++ ++++++.|+.|++||+++++...
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEE
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEE
Confidence 99999998765321 34577888888887 45665 68899999999999999988776
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEE
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 220 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (439)
.+.. |...|.+++|+|++ .++++|+.||.|++||+++++. ...+.+|...|.+
T Consensus 305 ~~~~-----------~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~---------------~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 305 ILSG-----------HTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL---------------MYTLQGHTALVGL 357 (464)
T ss_dssp EECC-----------CSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEE
T ss_pred EecC-----------CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE---------------EEEEeCCCCcEEE
Confidence 6643 56779999999987 8999999999999999988653 2233678899999
Q ss_pred EEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeE
Q 013644 221 LAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 299 (439)
Q Consensus 221 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i 299 (439)
+.|+ +.++++++ |+.|++||+.++ ....... +.. .+..++ ++++++++++|+ ||.|
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~----------------~~~~~~~-~~~--~~~~~~-~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDY----------------SRKFSYH-HTN--LSAITT-FYVSDNILVSGS-ENQF 414 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTC----------------CEEEEEE-CTT--CCCEEE-EEECSSEEEEEE-TTEE
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCC----------------ceeeeec-CCC--CccEEE-EEeCCCEEEEec-CCeE
Confidence 9997 46777775 999999999865 2222222 222 245555 789999999998 8999
Q ss_pred EEEecCCCceeEe-ecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 300 FIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 300 ~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
++||+.+++++.. +..|...|.+++|+ ...++++++.||.+.+|-
T Consensus 415 ~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 415 NIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999999999886 67788999999997 445666777788766654
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-37 Score=263.90 Aligned_cols=266 Identities=15% Similarity=0.197 Sum_probs=202.7
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFVQ 129 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~ 129 (439)
++.+|...|++++|+| ++++|++|+.|++|+||++..........+.+|.++|.+++|+|+ ++ +|++++.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECC--CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEEE
Confidence 4578999999999999 999999999999999999975433344678899999999999864 55 788999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
+||+++++....... ..|...|.+++|+|+. +.+|++++.|+.|++||++.... ...
T Consensus 81 iWd~~~~~~~~~~~~---------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-------------~~~ 138 (297)
T 2pm7_B 81 IWKEENGRWSQIAVH---------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-------------TSP 138 (297)
T ss_dssp EEEBSSSCBCCCEEE---------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-------------BCC
T ss_pred EEEcCCCceEEEEEe---------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-------------eee
Confidence 999988753222211 1156779999999972 37999999999999999986431 111
Q ss_pred ccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
....+|...|.+++|+|++..-. ..+ . ..++++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~-------------------------------------~~~---------~-~~~~~~ 171 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEED-------------------------------------GEH---------N-GTKESR 171 (297)
T ss_dssp EEEECCSSCEEEEEECCCC-----------------------------------------------------------CC
T ss_pred eeeecccCccceEeecCCccccc-------------------------------------ccC---------C-CCCCcc
Confidence 23367788888888888642100 000 0 234678
Q ss_pred eEEEeCCCCeEEEEecCCCc----eeEeecccccceEEEeecCCC---cEEEEEecCCeEEEeccCCCCC----CCC--C
Q 013644 289 YVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMPTDF----PPL--P 355 (439)
Q Consensus 289 ~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~----~~~--~ 355 (439)
+|++|+.|+.|++||+.+++ +...+.+|...|.+++|+|++ ++||+++.|++|++|++..... ..+ .
T Consensus 172 ~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~ 251 (297)
T 2pm7_B 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE 251 (297)
T ss_dssp EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS
T ss_pred eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc
Confidence 99999999999999998766 667889999999999999985 8999999999999999876431 111 3
Q ss_pred CchhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 356 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
.+...+.... +.+++..+++++.||.|++|+...
T Consensus 252 ~~~~~v~~~~-~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 252 KFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCSSCEEEEE-ECSSSCCEEEEETTSCEEEEEECT
T ss_pred cCCCcEEEEE-ECCCCCEEEEEcCCCcEEEEEECC
Confidence 3444454444 566778899999999999999764
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.8e-37 Score=271.79 Aligned_cols=292 Identities=9% Similarity=0.081 Sum_probs=219.5
Q ss_pred cccEEEEEEeecCCCcEEEEecCCC-------cEEEEEcccCcee--------eeEEecCCCCceEEEEEccCCCcEEEE
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADG-------QVRLGQIFEDGRM--------DTKRLGKHQGRVYKLAVEPGSPYIIYS 121 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iw~~~~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~l~s 121 (439)
.-+|++++|+| ++.+|++|+.+. .|++|++...... ....+.+|...|.+++++++ .+++
T Consensus 14 g~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---IILV 88 (365)
T ss_dssp SSCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---EEEE
T ss_pred CCCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---EEEE
Confidence 35899999999 999999987543 5999998755421 12346788888988877654 3444
Q ss_pred e-----------CCCCcEEEEEccCCCceeeE-EeeccCCCCCCCCceeeeEEEeecCCCCcEEE--EeecCceEEEEeC
Q 013644 122 C-----------GEDGFVQHFDLRSDSATRLF-YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA--VGGSDEYARVYDI 187 (439)
Q Consensus 122 ~-----------~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~i~i~d~ 187 (439)
+ +.|+.+++|++......... ....... ...+...+.+++|+|++ ++++ +++.|+.|++||+
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDA---STNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSC---CCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEET
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceee---cCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeEC
Confidence 3 45788999998876543322 2222111 11134458899999998 6655 4557899999999
Q ss_pred cCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCccccccccccee
Q 013644 188 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 267 (439)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
.+++.+ .. ..|...|.+++|+|+|+++++++++.+.+|+..++ .....
T Consensus 165 ~~~~~~--------------~~--~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~----------------~~~~~ 212 (365)
T 4h5i_A 165 SDLTEK--------------FE--IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG----------------SCIAR 212 (365)
T ss_dssp TTTEEE--------------EE--EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTC----------------CEEEE
T ss_pred CCCcEE--------------EE--eCCCCceEEEEEccCCceEEeccceeEEEEEeccC----------------cceee
Confidence 986631 11 23567899999999999999999888888887765 22222
Q ss_pred EeCCCCcceeeeEEeeCCCCceEEEeCCCC----eEEEEecCCCce----eEeecccccceEEEeecCCCcEEEEEecCC
Q 013644 268 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 268 ~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
.........+.+++ |+|+++++++++.|+ .+++|++..... ...+.+|...|++++|+|+|++||+|+.|+
T Consensus 213 ~~~~~~~~~v~~v~-fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 213 KTDFDKNWSLSKIN-FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp ECCCCTTEEEEEEE-EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eecCCCCCCEEEEE-EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 22222233589999 899999999998877 688899876643 356778999999999999999999999999
Q ss_pred eEEEeccCCCCC-CC-CCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 340 TVKLWAPMPTDF-PP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 340 ~i~iw~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+|+|||+.++++ .. +.+|...|..+. +++++.+++++|.|++|+||+++..
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~-fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVT-ISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEE-ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999988775 33 567888887776 6778899999999999999999754
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-37 Score=278.79 Aligned_cols=290 Identities=13% Similarity=0.118 Sum_probs=225.9
Q ss_pred ceEEEEECCCCCE-EEEecCCCeEEEEeCCCCcc---eeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 16 CVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRRE---KFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 16 ~I~~~~~s~~~~~-l~t~~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
....++++|+... +++++.||.|+||++..... ....+.+|...|++++|+|. ++.+|++++.||+|++|++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCC
Confidence 3456888887654 44578899999999966432 23345789999999999983 6789999999999999999876
Q ss_pred ce-----eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 92 GR-----MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 92 ~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
.. .....+.+|...|.+++|+|+++.+|++++.|+.|++||+++++....+.. ..|...|.+++|+
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP---------DVHPDTIYSVDWS 185 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---------TTCCSCEEEEEEC
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---------CCCCCceEEEEEC
Confidence 32 223567889999999999999866888999999999999999877665520 1167789999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc-EEEEEEccCCCEEEEe---c-CCeEEEE
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-ITGLAYSNTSELLISY---N-DELVYLF 241 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~---~-d~~i~i~ 241 (439)
|++ .+|++++.|+.|++||+++++.+ ......|... +.++.|+|++++|+++ + ++.|++|
T Consensus 186 ~~~-~~l~~~~~d~~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 186 RDG-ALICTSCRDKRVRVIEPRKGTVV--------------AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp TTS-SCEEEEETTSEEEEEETTTTEEE--------------EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred CCC-CEEEEEecCCcEEEEeCCCCcee--------------eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 976 89999999999999999986532 1221344444 8899999999999998 4 9999999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEe-CCCCcceeeeEEeeCCCCceEE-EeCCCCeEEEEecCCCce-eEeecc--c
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKL-VRLMVG--D 316 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h 316 (439)
|+.+.. ....... .+.. .+.++. |+|++++|+ +|+.||.|++|++.+++. +..+.. |
T Consensus 251 d~~~~~---------------~~~~~~~~~~~~--~v~~~~-~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~ 312 (402)
T 2aq5_A 251 DTKHLE---------------EPLSLQELDTSS--GVLLPF-FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS 312 (402)
T ss_dssp ETTBCS---------------SCSEEEECCCCS--SCEEEE-EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC
T ss_pred cCcccc---------------CCceEEeccCCC--ceeEEE-EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc
Confidence 998752 1122222 2333 388888 899999886 566899999999998874 445544 4
Q ss_pred ccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 317 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 317 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
...|.+++|+|++.++++ .++.+++|++.+++
T Consensus 313 ~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 313 KESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 589999999999998865 56799999997653
No 95
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=277.43 Aligned_cols=277 Identities=12% Similarity=0.119 Sum_probs=208.4
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
.-...|.+++|+|||+++||++.|++|+ |...++. +.+|...|.+++|+| +| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~----l~gh~~~v~~V~FsP--dg-------~~~~~~~~~~~-- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD----INCNSKNLFHVKEFP--LE-------FENKLDFELAQ-- 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC----CSSBGGGTEEEEEEC--CC-------CCCTTTTSCCC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce----ecCCCccEEEEEECC--CC-------CcceEEEEeCC--
Confidence 3457899999999999999999999999 7544433 369999999999999 87 56666565543
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
......+ .|...|.+++|+|+|. .|++++.||.|++||... ....+. +..+.....+.+++|+|+| +
T Consensus 76 -~~~~~~~-~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-------~~~~~~~~sv~svafSPDG-~ 142 (588)
T 2j04_A 76 -QNGLLNS-QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-------SKGNLSSRTYHCFEWNPIE-S 142 (588)
T ss_dssp -SSCSSTT-SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-------CSSCSTTTCEEEEEECSSS-S
T ss_pred -CceEeec-CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-------CCCccccccEEEEEEcCCC-C
Confidence 2212222 4588999999999998 588999999999999544 222221 1111112358999999987 8
Q ss_pred EEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc----ccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL----IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 247 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 247 (439)
+|++|+.||+|++||+..+.... + .+..... ..+|...|.+++|+|+| +++++.|+.+++|++..+.
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~------~--~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENT------P--EFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTC------C--CCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred EEEEEcCCCEEEEEECCCCcccc------c--cceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 99999999999999998754200 0 0001111 25677899999999999 6666679999999998751
Q ss_pred CCCCCCCCcccccccccceeEe-CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee-
Q 013644 248 GPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP- 325 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~- 325 (439)
. ....+.+. +|.. .|.+++ |+ |+.||+++ ++.|++||+.+++......+|...|..++|
T Consensus 214 ~-------------~~~~~tL~~~h~~--~V~sva-Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~ 274 (588)
T 2j04_A 214 H-------------QPVSRMIQNASRR--KITDLK-IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLN 274 (588)
T ss_dssp S-------------CCCEEEEECCCSS--CCCCEE-EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEET
T ss_pred c-------------ccceeeecccccC--cEEEEE-EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEee
Confidence 0 01123453 5654 499999 66 68999887 699999999988775444489999999999
Q ss_pred -cCCCcEEEEEecCCeEEEeccC
Q 013644 326 -HPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 326 -s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
+|++..|++++.||+ ++|...
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESS
T ss_pred eCCCCCEEEEEcCCCC-EEEeec
Confidence 999999999999999 999975
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-36 Score=271.82 Aligned_cols=288 Identities=13% Similarity=0.204 Sum_probs=227.0
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
+|...+....+.+ ++..+++++.|+.|++|++.+++...... ..|...|.+++|+|+++ +|++++.||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~--s~~~l~~~~~d~~v~lw~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDW--SNLNVVAVALERNVYVWNADSGSVSALAE-TDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEE--CTTSEEEEEETTEEEEEETTTCCEEEEEE-CCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEee--cCCCEEEEECCCeEEEeeCCCCcEeEeee-cCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECc
Confidence 4444433333444 45668888999999999998887664433 23889999999999998 67899999999999999
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCC
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 214 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
+++....+.. |...|.+++|++ .++++|+.||.|++||++... ........|
T Consensus 165 ~~~~~~~~~~-----------~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~ 216 (401)
T 4aez_A 165 SQTKLRTMAG-----------HQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIAN--------------HQIGTLQGH 216 (401)
T ss_dssp TCCEEEEECC-----------CSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS--------------CEEEEEECC
T ss_pred CCeEEEEecC-----------CCCceEEEEECC---CEEEEEcCCCCEEEEecccCc--------------ceeeEEcCC
Confidence 9887776643 677899999954 699999999999999998543 223344678
Q ss_pred CccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEE
Q 013644 215 NIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS 292 (439)
Q Consensus 215 ~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~ 292 (439)
...|.+++|+|++.+|++++ |+.|++||+.++ .....+..|... +.+++ |+|++. ++++
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------~~~~~~~~~~~~--v~~~~-~~p~~~~ll~~ 277 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----------------IPKFTKTNHNAA--VKAVA-WCPWQSNLLAT 277 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----------------SEEEEECCCSSC--CCEEE-ECTTSTTEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----------------CccEEecCCcce--EEEEE-ECCCCCCEEEE
Confidence 99999999999999999987 999999999876 455667777665 89999 799765 5566
Q ss_pred eC--CCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEe--cCCeEEEeccCCCCC---CCCCCchhhhhhhh
Q 013644 293 GS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF---PPLPDNAEKIMKAN 365 (439)
Q Consensus 293 ~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~ 365 (439)
++ .|+.|++||+.+++++..+. +...|.+++|+|++++|++++ .||.|++|++.+++. ..+.+|...+....
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred ecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 54 79999999999999988886 567899999999999999954 899999999987543 23456666666655
Q ss_pred ccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 366 KQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 366 ~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+..++..+++++.||.|++|++.+++...
T Consensus 357 -~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 357 -LSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp -ECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred -ECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 46677899999999999999999887653
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.6e-36 Score=268.77 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=232.1
Q ss_pred EEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce
Q 013644 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 60 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 139 (439)
++.|+|++ ++.|++|. |++|+|||+.+++......+.+|...|++++|+|+++ +|++|+.||.|++||+++++.+
T Consensus 108 ~~~l~wS~---~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 108 LNLVDWSS---GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CBCEEECT---TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE
T ss_pred ceeEEECC---CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEE
Confidence 46689986 45777664 8999999999998877667778999999999999998 6789999999999999999877
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEE
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (439)
..+.. |...+.++.+++ .++++|+.|+.+++||..... .....+.+|...+.
T Consensus 183 ~~~~~-----------h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~--------------~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 183 RNMTS-----------HSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAE--------------HHVATLSGHSQEVC 234 (420)
T ss_dssp EEECC-----------CSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS--------------CEEEEEECCSSCEE
T ss_pred EEEeC-----------CCCceEEEeeCC---CEEEEEeCCCceeEeeecccc--------------eeeEEeccccccee
Confidence 76654 667788888864 699999999999999988644 22334478899999
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEE--eCC
Q 013644 220 GLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS--GSD 295 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~--~~~ 295 (439)
.+.++|+++++++++ |+.+++|+...+... .........|... |.+++ |+|.+. ++++ |+.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~------------~~~~~~~~~~~~~--V~~~~-~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------WVPLQTFTQHQGA--VKAVA-WCPWQSNVLATGGGTS 299 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSC------------SCCSEEECCCSSC--EEEEE-ECTTCTTEEEEEECTT
T ss_pred eeeecCCCCeeeeeeccccceEEeecccccc------------ceeeeeecccCCc--eeeee-eCCCcccEEEEEeecC
Confidence 999999999999986 999999999876311 1234455566654 88998 677654 5544 568
Q ss_pred CCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEe--cCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcc
Q 013644 296 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH 372 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 372 (439)
|+.|++||+.+++++..+..| ..+.++.|+|+++.+++++ .|+.|+||++.+++. ..+.+|...|..+. +++++.
T Consensus 300 D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~-~spdg~ 377 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGA 377 (420)
T ss_dssp TCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSS
T ss_pred CCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCC
Confidence 999999999999999888765 5788999999999888765 789999999987765 67788988887776 566788
Q ss_pred eEEEeCCCcEEEEEEeccccee
Q 013644 373 SRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 373 ~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
.+++++.||+|++|++......
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCeEEEEECCCCCcc
Confidence 9999999999999999765444
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=274.53 Aligned_cols=328 Identities=12% Similarity=0.120 Sum_probs=240.4
Q ss_pred CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe-----------cCCC
Q 013644 35 DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL-----------GKHQ 103 (439)
Q Consensus 35 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----------~~~~ 103 (439)
++.+++|++....... .+.+|.+.|++++|+|. ++++|++++.||.|++|++.+......... .+|.
T Consensus 22 ~~~~~v~~~~~~~~~~-~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-VERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEE-ECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCccee-eeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 4567888887765544 45789999999999973 688999999999999999987765433221 3599
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC--CcEEEEeecCce
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN--PNYFAVGGSDEY 181 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~ 181 (439)
..|.+++|+|++..+|++++.|+.|++||+.+++....+. +...+.++.++|.+ ..++++++.++.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN------------FEETVYSHHMSPVSTKHCLVAVGTRGPK 167 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE------------CSSCEEEEEECSSCSSCCEEEEEESSSS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc------------CCCceeeeEeecCCCCCcEEEEEcCCCe
Confidence 9999999999554578899999999999999988776665 34568888888854 249999999999
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEec-CCeEEEEEccCCCCCCCCCCCcccc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDL 259 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 259 (439)
|++||+++++. ...+..|...|.+++|+|++. ++++++ |+.|++||++...............
T Consensus 168 v~~~d~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 232 (408)
T 4a11_B 168 VQLCDLKSGSC---------------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK 232 (408)
T ss_dssp EEEEESSSSCC---------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC
T ss_pred EEEEeCCCcce---------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc
Confidence 99999987652 123356888999999999998 577775 9999999998763211110000000
Q ss_pred cccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-----cceEEEeecCCCcEEEE
Q 013644 260 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-----HVVNQLEPHPHIPMFAT 334 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s 334 (439)
...........|... +.+++ |+|++++|++++.||.|++||+.+++....+..+. ..+........+..+++
T Consensus 233 ~~~~~~~~~~~~~~~--v~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 233 KSQAVESANTAHNGK--VNGLC-FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp SCCCTTTSSCSCSSC--EEEEE-ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred cceeeccccccccCc--eeEEE-EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 111122223455554 99999 89999999999999999999999988765554332 12222222334556777
Q ss_pred EecCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 335 CGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 335 ~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
++.|+.|++|++.+++. ..+.+|...+.... +.+++..+++++.||.|++|++.+.+...
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV-FQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEE-EETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEE-EcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 78899999999988775 55666777776655 56677889999999999999999887664
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.6e-36 Score=270.93 Aligned_cols=254 Identities=16% Similarity=0.287 Sum_probs=206.9
Q ss_pred eeeeccccceEEEEECCC-CCEEEEecCCCeEEEEeCCC----------CcceeeeecCCcccEEEEEEeecCCCc-EEE
Q 013644 8 GKLHGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKD----------RREKFSYLSGHLDNIFQTRIMPFTDDR-KII 75 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~ 75 (439)
..+.+|.+.|++++|+|+ +.+||+++.||.|++|++.+ .... ..+.+|...|.+++|+| ++. +|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~--~~~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-LRLRGHQKEGYGLSWNP--NLNGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-EEEECCSSCCCCEEECT--TSTTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-EEecCCCCCeEEEEeCC--CCCCeEE
Confidence 345679999999999997 78999999999999999976 3333 33578999999999999 877 999
Q ss_pred EecCCCcEEEEEcccCce-----eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC---ceeeEEeecc
Q 013644 76 TSSADGQVRLGQIFEDGR-----MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS---ATRLFYCSSF 147 (439)
Q Consensus 76 s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~ 147 (439)
+++.||.|++|++..... .....+.+|...|.+++|+|++..+|++++.|+.|++||++++. ....+..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~--- 275 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA--- 275 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC---
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec---
Confidence 999999999999987432 11245678999999999999666689999999999999999873 3333322
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 227 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (439)
|...|++++|+|++..+|++|+.||.|++||++...
T Consensus 276 --------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~------------------------------------ 311 (430)
T 2xyi_A 276 --------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK------------------------------------ 311 (430)
T ss_dssp --------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT------------------------------------
T ss_pred --------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC------------------------------------
Confidence 567799999999886689999999999999998632
Q ss_pred CEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEEeCCCCeEEEEecCC
Q 013644 228 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 228 ~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 306 (439)
.....+..|... |.++. |+|+++ +|++++.||.|++||+..
T Consensus 312 -----------------------------------~~~~~~~~h~~~--v~~i~-~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 312 -----------------------------------LKLHSFESHKDE--IFQVQ-WSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp -----------------------------------SCSEEEECCSSC--EEEEE-ECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred -----------------------------------CCeEEeecCCCC--EEEEE-ECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 122344455444 78888 788875 588888889999998876
Q ss_pred --------------CceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCC
Q 013644 307 --------------GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 307 --------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 349 (439)
.+++..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 366777888999999999999999 8999999999999998643
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.4e-35 Score=260.98 Aligned_cols=297 Identities=9% Similarity=0.055 Sum_probs=209.5
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCCCc
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSADGQ 82 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~ 82 (439)
.+++..+.+|.+.|++++|+|||++||+|+.++ ++||++.+....... +...+..+++.+ +++.+ ++++.|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLH--RTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECT--TSSEEEEECSSTTE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcC--CCCEEEEEECCccE
Confidence 445566789999999999999999999998775 789998876554332 222477788887 77776 56788899
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
|++||+.+++.+.. +. +...|.+++|+++. ++ ++ .|+.|++||+.++ +.+..+.. ...
T Consensus 83 v~iWd~~~~~~~~~--~~-~~~~v~~v~~~~~~--~~-~~-~~~~i~i~d~~~~~~~~~~~~~--------------~~~ 141 (355)
T 3vu4_A 83 VHIWDDVKKQDVSR--IK-VDAPVKDLFLSREF--IV-VS-YGDVISVFKFGNPWKRITDDIR--------------FGG 141 (355)
T ss_dssp EEEEETTTTEEEEE--EE-CSSCEEEEEECSSE--EE-EE-ETTEEEEEESSTTCCBSSCCEE--------------EEE
T ss_pred EEEEECCCCcEEEE--EE-CCCceEEEEEcCCE--EE-EE-EcCEEEEEECCCCceeeEEecc--------------CCc
Confidence 99999988876643 43 66799999999874 33 33 4789999999987 55554432 234
Q ss_pred EEeecCCCCcEEEE--eecCceEEEEeCcCCcccCCCCCCCCcccccc-cccccCCCccEEEEEEccCCCEEEEec-CCe
Q 013644 162 AIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCP-RHLIGKNNIHITGLAYSNTSELLISYN-DEL 237 (439)
Q Consensus 162 ~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~ 237 (439)
.+++++ .++++ |+.+|.|++||+.+++...............+ ...+.+|...|.+++|+|++++|++++ |+.
T Consensus 142 ~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 142 VCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred eEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 456666 34444 68999999999987542211111100011112 345578999999999999999999997 998
Q ss_pred -EEEEEccCCCCCCCCCCCcccccccccceeEe-C-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCcee--Ee
Q 013644 238 -VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-G-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV--RL 312 (439)
Q Consensus 238 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~ 312 (439)
|++||+.++ +....+. + |... |.+++ |+|++++|++++.|+.|++||+..+... ..
T Consensus 219 ~v~iwd~~~~----------------~~~~~~~~g~h~~~--v~~~~-~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~ 279 (355)
T 3vu4_A 219 IIRVFKTEDG----------------VLVREFRRGLDRAD--VVDMK-WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA 279 (355)
T ss_dssp EEEEEETTTC----------------CEEEEEECTTCCSC--EEEEE-ECTTSCEEEEEETTCEEEEEESSCCSCCCSEE
T ss_pred EEEEEECCCC----------------cEEEEEEcCCCCCc--EEEEE-ECCCCCEEEEEECCCEEEEEEccCCCCccccc
Confidence 999999877 5667777 4 6654 99999 8999999999999999999998765311 11
Q ss_pred ec---------------------ccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 313 MV---------------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 313 ~~---------------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+. .+......++|++++++|++++.||.+++|++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 11 11223467999999999999999999999998643
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=269.50 Aligned_cols=286 Identities=10% Similarity=0.091 Sum_probs=222.0
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc---ceeeee-------------------------------------
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR---EKFSYL------------------------------------- 53 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~------------------------------------- 53 (439)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4679999999999977766 46899999998887 332221
Q ss_pred ----------------cCCcccEEEEEEeecCCCcEE-EEecCCCcEEEEEcc--cCceeeeEEecCCCCceEEEEEccC
Q 013644 54 ----------------SGHLDNIFQTRIMPFTDDRKI-ITSSADGQVRLGQIF--EDGRMDTKRLGKHQGRVYKLAVEPG 114 (439)
Q Consensus 54 ----------------~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~v~~i~~~~~ 114 (439)
.+|...|++++|+| ++++| ++++.||.|++|++. +++.........|...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 13444799999999 99996 899999999999998 6665544333367789999999999
Q ss_pred CCcEEEEeCCCCcEEEEEccCCCcee----eEEeeccCCCCCCCCceeeeEEEeecCC---CCcEEEEeecCceEEEEeC
Q 013644 115 SPYIIYSCGEDGFVQHFDLRSDSATR----LFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGSDEYARVYDI 187 (439)
Q Consensus 115 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~ 187 (439)
++ +|++++.+|.|++|++.+++... .+.. |...|.+++|+|+ + .+|++|+.|+.|++||+
T Consensus 161 ~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 161 DT-TVIIADKFGDVYSIDINSIPEEKFTQEPILG-----------HVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHY 227 (450)
T ss_dssp SS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEE-----------CSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEE
T ss_pred CC-EEEEEeCCCcEEEEecCCcccccccceeeec-----------ccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEEC
Confidence 98 57799999999999998876543 2222 6678999999998 5 89999999999999999
Q ss_pred cCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccce
Q 013644 188 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ 266 (439)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
++++. ......+|...|.+++|+ ++++|++++ |+.|++||+.++. ...
T Consensus 228 ~~~~~--------------~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~----------------~~~ 276 (450)
T 2vdu_B 228 PQCFI--------------VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK----------------NLS 276 (450)
T ss_dssp SCTTC--------------EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC----------------EEE
T ss_pred CCCce--------------eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc----------------Eee
Confidence 87652 222346788999999999 999999987 9999999998762 223
Q ss_pred eEeCC-----------------------CCcceeeeEEeeCCCCceEEEeC-CCCeEEEEec--CCC---ceeEeecccc
Q 013644 267 VYSGH-----------------------RNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKK--KGG---KLVRLMVGDR 317 (439)
Q Consensus 267 ~~~~~-----------------------~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~h~ 317 (439)
.+..+ .....+.++. ++|++++|++++ .++.|++|++ .++ +.+..+..|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~- 354 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII-KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP- 354 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEE-ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEE-EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-
Confidence 33211 1123488888 799999999998 8999999999 555 677778887
Q ss_pred cceEEEeecCCCcEEEEEec------CCeEEEeccCC
Q 013644 318 HVVNQLEPHPHIPMFATCGI------EKTVKLWAPMP 348 (439)
Q Consensus 318 ~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~ 348 (439)
..|.+++|+|++.++++++. +..|.+|.+..
T Consensus 355 ~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 355 YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 88999999996544444333 45688888753
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=292.89 Aligned_cols=265 Identities=15% Similarity=0.236 Sum_probs=209.6
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc-ceeeeecCCcccEEEEEEeecCC--CcEEEEecCCCcE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPFTD--DRKIITSSADGQV 83 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~~~dg~i 83 (439)
+..+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. .....+.+|...|++++|+| + +++|++|+.||.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC--TTSCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC--CCCCCEEEEEeCCCeE
Confidence 46789999999999999999999999999999999997432 33344679999999999998 6 9999999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
++||+.+++......+.+|...|.+++|+|+ +. ++++++.||.|++||++++.......... |...|.
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---------~~~~v~ 149 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDA---------HAIGVN 149 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEEC---------CSSCEE
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeec---------CCCceE
Confidence 9999988775555678889999999999999 76 68899999999999999875443332211 567899
Q ss_pred EEeecCC------------CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC---
Q 013644 162 AIVIDPR------------NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--- 226 (439)
Q Consensus 162 ~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 226 (439)
+++|+|. ++.++++|+.||.|++||++++.. ..........|...|.+++|+|+
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-----------~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----------TYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-----------EEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-----------cceeeeeecCCCCcEEEEEeccCCCC
Confidence 9999995 248999999999999999987531 11223344678999999999999
Q ss_pred CCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 227 SELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 227 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
+.++++++ |+.|++||+.++..... ........|.. .+.+++ |+|+++++++|+.||.|++|++.
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~-----------~~~~~~~~~~~--~v~~l~-~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQGPWK-----------KTLLKEEKFPD--VLWRAS-WSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSSSCCB-----------CCBSSSSCCSS--CCCCEE-ECTTTCCEEEECSSSCEECCBCC
T ss_pred CCEEEEEecCCEEEEecCCCCCCcce-----------eEEeccCCCCC--ceEEEE-EcCCCCEEEEEcCCCEEEEEecC
Confidence 89999887 99999999987521100 11122223443 488999 89999999999999999999998
Q ss_pred CCc
Q 013644 306 GGK 308 (439)
Q Consensus 306 ~~~ 308 (439)
++.
T Consensus 285 ~~~ 287 (753)
T 3jro_A 285 LEG 287 (753)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-37 Score=265.91 Aligned_cols=273 Identities=15% Similarity=0.152 Sum_probs=201.6
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCc
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGF 127 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~ 127 (439)
..++.+|...|++++|+| ++++|++|+.|++|++||+.++.......+.+|...|.+++|+|. ++ +|++++.|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~ 82 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRK 82 (316)
T ss_dssp --------CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSC
T ss_pred eeecccccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCE
Confidence 344679999999999999 999999999999999999987765455678899999999999863 55 6889999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 206 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 206 (439)
|++||+++++........ .|...|.+++|+|++ +.+|++|+.|+.|++||++.... ..
T Consensus 83 v~iWd~~~~~~~~~~~~~---------~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~------------~~ 141 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHA---------GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ------------WE 141 (316)
T ss_dssp EEEECCSSSCCCEEEEEC---------CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC------------EE
T ss_pred EEEEECCCCcceEEEEcc---------CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC------------cc
Confidence 999999887532222111 167789999999973 47999999999999999986421 01
Q ss_pred ccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 207 PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
.......|...+.+++|+|+... +. +..+... . ...+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~------~~------------------------------~~~~~~~------~-~~~~ 178 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVP------GS------------------------------LIDHPSG------Q-KPNY 178 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------------------------------------------CCS------C-CCCC
T ss_pred eeeeeccccCCcceEEEccccCC------cc------------------------------ccccccc------c-Cccc
Confidence 12233567788888999887420 00 0000000 0 2335
Q ss_pred CceEEEeCCCCeEEEEecCCC---ceeEeecccccceEEEeecCCC----cEEEEEecCCeEEEeccCCCC-----CCCC
Q 013644 287 DEYVMSGSDCGHLFIWKKKGG---KLVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPTD-----FPPL 354 (439)
Q Consensus 287 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~-----~~~~ 354 (439)
+++|++|+.|+.|++||+... +++..+.+|...|.+++|+|++ ++|++++.||+|++|++.... ...+
T Consensus 179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred cceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence 789999999999999999755 4677889999999999999987 789999999999999987632 1223
Q ss_pred CCchhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 355 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
..|...+..+. +.+++..+++++.||+|++|+...
T Consensus 259 ~~~~~~v~~v~-~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 259 HKFNDVVWHVS-WSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EECSSCEEEEE-ECTTTCCEEEEESSSCEEEEEECT
T ss_pred hcCCCcEEEEE-EcCCCCEEEEEcCCCeEEEEEECC
Confidence 33445555544 566778899999999999999863
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.3e-36 Score=270.93 Aligned_cols=278 Identities=14% Similarity=0.260 Sum_probs=226.4
Q ss_pred cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEc
Q 013644 54 SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133 (439)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 133 (439)
.+|...|.++.+ ++++|++|+.||.|++||+.+++.. ..+.+|...|.+++| +++ ++++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEE--EEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEEC
Confidence 356677888776 7899999999999999999887765 558899999999999 555 7889999999999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
.+++....+.. |...|.+++|++ ..+++|+.||.|++||+.+++.. .......+
T Consensus 201 ~~~~~~~~~~~-----------h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~------------~~~~~~~~ 254 (435)
T 1p22_A 201 NTGEMLNTLIH-----------HCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI------------TLRRVLVG 254 (435)
T ss_dssp SSCCEEEEECC-----------CCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC------------EEEEEECC
T ss_pred CCCcEEEEEcC-----------CCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc------------eeeeEecC
Confidence 99987766643 567799999975 58999999999999999876521 12234467
Q ss_pred CCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE
Q 013644 214 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 292 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~ 292 (439)
|...|.++.+ +++++++++ |+.|++||+.++ +....+.+|... +.++. + +++++++
T Consensus 255 ~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~----------------~~~~~~~~~~~~--v~~~~-~--~~~~l~~ 311 (435)
T 1p22_A 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC----------------EFVRTLNGHKRG--IACLQ-Y--RDRLVVS 311 (435)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEE-E--ETTEEEE
T ss_pred CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC----------------cEEEEEcCCCCc--EEEEE-e--CCCEEEE
Confidence 8899999999 677888876 999999999877 567778888775 88887 4 6789999
Q ss_pred eCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC----------CCCCCCchhhhh
Q 013644 293 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPPLPDNAEKIM 362 (439)
Q Consensus 293 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~ 362 (439)
|+.||.|++||+.+++++..+.+|...|.+++| ++.+|++|+.||.|++||+..+. ...+.+|...+.
T Consensus 312 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE
Confidence 999999999999999999999999999999999 78899999999999999986543 233456666666
Q ss_pred hhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 363 KANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
...+ ++..+++++.||.|++|++.+....
T Consensus 390 ~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 390 RLQF---DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEE---CSSCEEECCSSSEEEEEC-------
T ss_pred EEEe---CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 6554 5678999999999999999876544
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-35 Score=261.08 Aligned_cols=280 Identities=16% Similarity=0.127 Sum_probs=219.2
Q ss_pred eecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc-eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 52 YLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG-RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 52 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
+..+|.+.|++++|+| ++.+|++++.|+.|++|++.++. ......+..|...|.+++|+|+++.+|++++.||.|++
T Consensus 6 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cccCCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3468999999999999 99999999999999999998766 11223455799999999999998724679999999999
Q ss_pred EEc-cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC---------CcccCCCCCCC
Q 013644 131 FDL-RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK---------CHWYSPISSDT 200 (439)
Q Consensus 131 wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~ 200 (439)
||+ .+++. ..+... .|...|.+++|+| + .+|++++.|+.|++||+++ ++.+.
T Consensus 84 wd~~~~~~~-~~~~~~---------~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------ 145 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNN---------EANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN------ 145 (342)
T ss_dssp ECSSSSSSE-EECBSC---------CCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSS------
T ss_pred EEeccCCce-Eecccc---------CCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeee------
Confidence 999 77754 222110 1566799999999 5 8999999999999999986 43211
Q ss_pred CcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccC-CCCCCCCCCCcccccccccceeEeCCCCcceeee
Q 013644 201 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 279 (439)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (439)
. ..+...+.+++|+|++ +++++.++.|++||+.. +.. ........+.. .+.+
T Consensus 146 ---------~-~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~--~i~~ 198 (342)
T 1yfq_A 146 ---------N-TKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD--------------NGTIEESGLKY--QIRD 198 (342)
T ss_dssp ---------S-SSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC--------------CCEEEECSCSS--CEEE
T ss_pred ---------E-EeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc--------------cceeeecCCCC--ceeE
Confidence 1 1267889999999988 44444599999999987 410 11122333443 4899
Q ss_pred EEeeCC-CCceEEEeCCCCeEEEEecCCC------ceeEeeccccc---------ceEEEeecCCCcEEEEEecCCeEEE
Q 013644 280 VNFFGP-NDEYVMSGSDCGHLFIWKKKGG------KLVRLMVGDRH---------VVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 280 ~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
++ |+| +++++++++.||.|++|++... +....+..|.. .|.+++|+|++++|++++.||.|++
T Consensus 199 i~-~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 199 VA-LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp EE-ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EE-ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE
Confidence 99 899 9999999999999999999887 77888888865 9999999999999999999999999
Q ss_pred eccCCCCC-CCCCCc-hhhhhhhhccccCcceEEEeCCCcE
Q 013644 344 WAPMPTDF-PPLPDN-AEKIMKANKQGREDHSRITLTPDVI 382 (439)
Q Consensus 344 w~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~ 382 (439)
||+.+++. ..+.+| ...+..+. .++..+++++.||.
T Consensus 278 wd~~~~~~~~~~~~~h~~~v~~~~---~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 278 WNLQTRKKIKNFAKFNEDSVVKIA---CSDNILCLATSDDT 315 (342)
T ss_dssp EETTTTEEEEECCCCSSSEEEEEE---ECSSEEEEEEECTH
T ss_pred EcCccHhHhhhhhcccCCCceEec---CCCCeEEEEecCCc
Confidence 99987764 556666 66555444 55667777777776
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=275.20 Aligned_cols=271 Identities=10% Similarity=0.099 Sum_probs=202.7
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce---------eeeEEecCCC------------CceEEEEEcc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR---------MDTKRLGKHQ------------GRVYKLAVEP 113 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---------~~~~~~~~~~------------~~v~~i~~~~ 113 (439)
.+.+.|++++|+| ++++|++|+.||.|++|++.+++. .....+.+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNH--SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 5678999999999 999999999999999999986652 1235577898 8899999999
Q ss_pred CCC-cEEEEeCCCCcEEEEEccCCCceeeEEeeccC-----------------------------CCCCCCCceeeeEEE
Q 013644 114 GSP-YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS-----------------------------ENSKQPMNSIRLNAI 163 (439)
Q Consensus 114 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~~ 163 (439)
++. ..|++++.|+.|++||+.++............ .......|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 973 26779999999999999875432110000000 000012377889999
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcCCc-ccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEec-CCeEEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYL 240 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-d~~i~i 240 (439)
+|+|++ .+|++| .|+.|++||++... ....+.. .......|...|.+++|+|++ .+|++++ |+.|++
T Consensus 184 ~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 184 SINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDI--------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp EECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEEC--------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred EEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeec--------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 999986 789988 79999999998432 1110000 001236788999999999998 8888887 999999
Q ss_pred EEccCCCCCCCCCCCcccccccccceeEeCCCCc----------ceeeeEEeeCCCCceEEEeCCCCeEEEEecCC-Cce
Q 013644 241 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----------QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKL 309 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~ 309 (439)
||++++... ......+..|... ..+.+++ |+|++++|++++. +.|++||+.+ +++
T Consensus 254 wd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 254 CDMRASALC------------DRHSKLFEEPEDPSNRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp EETTTCSSS------------CTTCEEECCC-----CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTCCSSC
T ss_pred EECcCCccc------------cceeeEeccCCCccccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCCCccc
Confidence 999876210 0114566666531 1499999 8999999999999 9999999997 888
Q ss_pred eEeecccccc---------------eEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 310 VRLMVGDRHV---------------VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 310 ~~~~~~h~~~---------------v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+..+.+|... +..++|+|++++|++++.||.|++||+.+++.
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 8899888642 33499999999999999999999999987764
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-36 Score=261.29 Aligned_cols=275 Identities=10% Similarity=0.048 Sum_probs=206.8
Q ss_pred EECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc---------cC
Q 013644 21 EFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF---------ED 91 (439)
Q Consensus 21 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~---------~~ 91 (439)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+| + +++++.|++|++|+.. +.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 344578899999999999999999987766543 46788888988 5 9999999999999765 22
Q ss_pred ceeeeEEecCCCCceEEEEEcc--CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEP--GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
+.+. ....+|...|.+++|+| +++ ++++++.||.|++||+++++........ +...+.+++|+|++
T Consensus 115 ~~~~-~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 115 KVLR-EIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAK----------SDVEYSSGVLHKDS 182 (343)
T ss_dssp CEEE-EEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCC----------SSCCCCEEEECTTS
T ss_pred ceeE-EeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecC----------CCCceEEEEECCCC
Confidence 2221 22335778999999999 887 6789999999999999998875443221 34469999999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC-CCccEEEEEEccCCCEEEEecCCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~ 248 (439)
.+|++|+.||.|++||+++++. ....+.. |...|.+++|+|++.+|++++++.|++||+++...
T Consensus 183 -~~lasg~~dg~i~iwd~~~~~~--------------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 183 -LLLALYSPDGILDVYNLSSPDQ--------------ASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG 247 (343)
T ss_dssp -CEEEEECTTSCEEEEESSCTTS--------------CCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred -CEEEEEcCCCEEEEEECCCCCC--------------CccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence 8999999999999999998762 1112244 88999999999999999999877999999987621
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEEecCCCceeEeecccccceEEEeecC
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 327 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 327 (439)
. .....+..+.....-.+++ |+|+|++|++++. |+.|++|++......... .++..++|++
T Consensus 248 ~-------------~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~ 309 (343)
T 3lrv_A 248 T-------------LAYPTYTIPEFKTGTVTYD-IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQS 309 (343)
T ss_dssp C-------------BSSCCCBC-----CCEEEE-ECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC--
T ss_pred c-------------eeecccccccccccceEEE-ECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCc
Confidence 1 1111122222221113577 8999999999888 999999998765543332 5778899998
Q ss_pred ---CCcEEEEEecCCeEEEeccCC
Q 013644 328 ---HIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 328 ---~~~~l~s~~~dg~i~iw~~~~ 348 (439)
+.+.+++++.||.+.++-...
T Consensus 310 ~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 310 DTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --CCCCEEEEEEETTEEEEEEECS
T ss_pred cccccceeEEEecCCceEEEEecC
Confidence 888999999999999876543
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.6e-34 Score=258.83 Aligned_cols=289 Identities=8% Similarity=0.050 Sum_probs=230.6
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee----eecCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS----YLSGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
+.+..+..+. .+.+++|+|++.++++++.++.|++||+.+++.... .+.+|...|.+++|+| ++.++++++.|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGG
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCC
Confidence 4555565554 466999999888888999999999999998876542 2357889999999998 99999999999
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
+.|++||+.+++.. ..+..|...+.+++|+|+++.++++++.|+.|++||+++++....+. ....+
T Consensus 191 ~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------------~~~~~ 256 (433)
T 3bws_A 191 NAVHVFDLKTLAYK--ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD------------KIGLP 256 (433)
T ss_dssp TEEEEEETTTCCEE--EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC------------CCSEE
T ss_pred CEEEEEECCCceEE--EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec------------CCCCc
Confidence 99999999877665 44667889999999999999777788899999999999887655443 23358
Q ss_pred EEEeecCCCCcEEEEee--------cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEE-E
Q 013644 161 NAIVIDPRNPNYFAVGG--------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-I 231 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 231 (439)
.+++|+|++ ..+++++ .|+.|++||+.+++... . ..+...+..++|+|+++.+ +
T Consensus 257 ~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~---------------~-~~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 257 RGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLID---------------T-IGPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp EEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE---------------E-EEEEECEEEEEECSSTTEEEE
T ss_pred eEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEe---------------e-ccCCCCcceEEECCCCCEEEE
Confidence 999999987 6777776 48899999998765211 1 2334578899999999755 5
Q ss_pred Eec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC---------------
Q 013644 232 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--------------- 295 (439)
Q Consensus 232 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~--------------- 295 (439)
++. ++.|++||+.++ +....+. +.. .+.+++ |+|+++++++++.
T Consensus 320 ~~~~~~~v~v~d~~~~----------------~~~~~~~-~~~--~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEK----------------KVQKSIP-VFD--KPNTIA-LSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EETTTTEEEEEETTTT----------------EEEEEEE-CSS--SEEEEE-ECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred EecCCCEEEEEECCCC----------------cEEEEec-CCC--CCCeEE-EcCCCCEEEEEecCCCcccccccccccc
Confidence 544 999999999866 3444444 222 378888 8999998888766
Q ss_pred CCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEec-CCeEEEeccCC
Q 013644 296 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP 348 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 348 (439)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++.+
T Consensus 380 dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999888876 457899999999999988875 99999999863
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=250.19 Aligned_cols=282 Identities=14% Similarity=0.184 Sum_probs=224.6
Q ss_pred EEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce
Q 013644 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 60 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 139 (439)
.++|+|++ ++ +|++| .|++|+|||+.+++......+.+|...|++++|+|+++ +|++|+.|++|++||+++++.+
T Consensus 28 ~~~l~WS~--~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSS--GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECT--TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECC--CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeE
Confidence 46789997 54 66665 59999999999998877767778999999999999998 6789999999999999999887
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEE
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (439)
..+.. |...+.++.+.+ .++++++.++.+++|+..... .......+|...+.
T Consensus 103 ~~~~~-----------h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 103 RNMTS-----------HSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAE--------------HHVATLSGHSQEVC 154 (318)
T ss_dssp EEEEC-----------CSSCEEEEEEET---TEEEEEETTSEEEEEETTSSS--------------CEEEEEECCSSCEE
T ss_pred EEecC-----------ccceEEEeecCC---CEEEEEecCCceEeeecCCCc--------------eeEEEEcCccCceE
Confidence 77654 455677766654 689999999999999988754 23334467889999
Q ss_pred EEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCce---EEEeCC
Q 013644 220 GLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY---VMSGSD 295 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~---l~~~~~ 295 (439)
.+.+.++++++++++ |+.|++||+.++... .........+... +.++. ++|++.. +++++.
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~--v~~~~-~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------WVPLQTFTQHQGA--VKAVA-WCPWQSNVLATGGGTS 219 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTB------------SCCSEEECCCCSC--EEEEE-ECTTSTTEEEEEECTT
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCccc------------ccceeeecccCCc--eEEEE-ecCCCCcEEEEEecCC
Confidence 999999999999887 999999999875211 1122333444443 78888 6666553 356788
Q ss_pred CCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEe--cCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcc
Q 013644 296 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH 372 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 372 (439)
++.|++|+........... +...+..+.|+|+++.+++++ .|+.|++||+.+++. ..+.+|...|..+. +++++.
T Consensus 220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~-~spdg~ 297 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGA 297 (318)
T ss_dssp TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSS
T ss_pred CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCC
Confidence 9999999999887766554 567899999999999877654 799999999988775 67788888887766 566788
Q ss_pred eEEEeCCCcEEEEEEeccc
Q 013644 373 SRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 373 ~~~~~s~dg~v~~w~~~~~ 391 (439)
.+++++.||+|++|++...
T Consensus 298 ~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTEEEEECCSCC
T ss_pred EEEEEecCCeEEEEECCCC
Confidence 9999999999999998654
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.4e-34 Score=250.94 Aligned_cols=305 Identities=11% Similarity=0.090 Sum_probs=206.7
Q ss_pred EEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEE
Q 013644 40 FWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYII 119 (439)
Q Consensus 40 iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 119 (439)
||++.+...+.. ...|...|++++|+| ++++|++|+.++ +++|++.+....... +...+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~-~~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVP-ENHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMSQ----EMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -----------------CCCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEEE----ECSCCCEEEECTTSSEEE
T ss_pred cccccccCCccc-cccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeeee----ecCCeEEEEEcCCCCEEE
Confidence 455555554433 478999999999999 999999988775 789998765544221 223578888999888776
Q ss_pred EEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCC-cccCCCCC
Q 013644 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISS 198 (439)
Q Consensus 120 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 198 (439)
++++.|+.|++||+.+++.+..+. +...|.++.++++ .++++ .++.|++||+.+. +.+..+
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~------------~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~-- 136 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK------------VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDD-- 136 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE------------CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCC--
T ss_pred EEECCccEEEEEECCCCcEEEEEE------------CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEe--
Confidence 788899999999999998877664 3446999999984 34443 4789999999876 322111
Q ss_pred CCCcccccccccccCCCccEEEEEEccCCCEEEE--ec-CCeEEEEEccCCCCCCCCCCCccccccccc-ceeEeCCCCc
Q 013644 199 DTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNS 274 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 274 (439)
.. +...+++++ .+++. +. +|.|++||+.++.......... ......+ ...+.+|...
T Consensus 137 -------------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-~~~~~~p~~~~~~~h~~~ 197 (355)
T 3vu4_A 137 -------------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-QQKAILGKGVLIKAHTNP 197 (355)
T ss_dssp -------------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSC
T ss_pred -------------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc-cccccCcccEEEEccCCc
Confidence 11 344456666 55554 34 9999999998753111000000 0001112 5778888876
Q ss_pred ceeeeEEeeCCCCceEEEeCCCCe-EEEEecCCCceeEeec-c-cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 275 QTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMV-G-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 275 ~~v~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
|.+++ |+|+|++|++|+.|++ |++||+.+++++..+. + |...|.+++|+|++++|++++.|++|++|++.....
T Consensus 198 --v~~~~-~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 198 --IKMVR-LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp --EEEEE-ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred --eEEEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 99999 8999999999999998 9999999999999998 5 999999999999999999999999999999976532
Q ss_pred CC---CCC--------------------chhhhhhhhccccCcceEEEeCCCcEEEEEEecccc
Q 013644 352 PP---LPD--------------------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 392 (439)
Q Consensus 352 ~~---~~~--------------------~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~ 392 (439)
.. +.. ..........+..++..+++++.||.+++|++..++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 275 NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 11 100 000000112345567788888888999999886654
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.3e-35 Score=263.40 Aligned_cols=262 Identities=14% Similarity=0.059 Sum_probs=178.8
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeee---EEecCCCCceEEEEEcc--------CCCcEEEEeCCCCcEEEEEccCCCc
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDT---KRLGKHQGRVYKLAVEP--------GSPYIIYSCGEDGFVQHFDLRSDSA 138 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~v~~i~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~ 138 (439)
++.+|++++.|++|+|||+.+++.... ..+.+|.+.|++++|+| +++ +|++++.|++|++||++++..
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCce
Confidence 567899999999999999987765432 23678999999999998 554 799999999999999998876
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcc----------ccccc
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD----------TFCPR 208 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~~~~ 208 (439)
...+.. |...+.+++|+|+++++|++|+.|+.|++||+++++............ .....
T Consensus 179 ~~~~~~-----------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 179 ILAGYP-----------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEE-----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred eeeecC-----------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 655544 566799999999886799999999999999999876543221110000 00011
Q ss_pred ccccCCCccEEEEEEc-cCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccccccc---ccceeEeCCCCcceeeeEEee
Q 013644 209 HLIGKNNIHITGLAYS-NTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKR---EEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~ 283 (439)
....+|...+.++.|. |+++.+++++ |+.+++||+..+................ ...+....+. ......++
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 324 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP---SLLGACPH 324 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC---CSSCCEEC
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC---cceeEEEc
Confidence 1224677788899987 7999998887 9999999998764332221111111110 1111111111 12233323
Q ss_pred CC-CCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 284 GP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 284 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.+ ++.++++|+.||.|++||+.++++...+.+|..+|.+++|+|||++||+++.+| +.+|++.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 33 555778899999999999999999988888999999999999999999998765 5566553
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=259.76 Aligned_cols=287 Identities=14% Similarity=0.084 Sum_probs=213.4
Q ss_pred eeeecCCcccEEEEEEeecCC---CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC
Q 013644 50 FSYLSGHLDNIFQTRIMPFTD---DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG 126 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg 126 (439)
...+.+|.+.|++++|+| + +.+|++++.||.|++|++.+........+.+|...|.+++|+|+++ +|++++.||
T Consensus 32 ~~~~~~h~~~v~~~~~~~--~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg 108 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSP--PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCDK 108 (368)
T ss_dssp EECSSCCSSCEEEEEECC--TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTS
T ss_pred eEeccCCCCceEEEEEcC--CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-EEEEEcCCC
Confidence 445689999999999999 7 5999999999999999998744444456788999999999999998 577999999
Q ss_pred cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee--cCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI--DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 127 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
.|++||+++++...... |...|.+++| +|++ .+|++++.||.|++||+++++.+..+
T Consensus 109 ~v~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-------- 167 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQ------------HDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL-------- 167 (368)
T ss_dssp EEEEEETTTTEEEEEEE------------CSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE--------
T ss_pred cEEEEEcCCCCceeecc------------ccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE--------
Confidence 99999999987665432 6778999999 8876 89999999999999999986632211
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 284 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 284 (439)
.. ...+.++.+.++ .+++++.++.+.+|++.... ...............++. +.
T Consensus 168 -------~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~ 221 (368)
T 3mmy_A 168 -------QL-PERCYCADVIYP-MAVVATAERGLIVYQLENQP----------------SEFRRIESPLKHQHRCVA-IF 221 (368)
T ss_dssp -------EC-SSCEEEEEEETT-EEEEEEGGGCEEEEECSSSC----------------EEEEECCCSCSSCEEEEE-EE
T ss_pred -------ec-CCCceEEEecCC-eeEEEeCCCcEEEEEecccc----------------chhhhccccccCCCceEE-Ec
Confidence 22 234566666543 34444469999999997652 111111111111234444 33
Q ss_pred CCCce----EEEeCCCCeEEEEecCCC---ceeEeeccccc------------ceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 285 PNDEY----VMSGSDCGHLFIWKKKGG---KLVRLMVGDRH------------VVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 285 ~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
++... +++++.||.|++|++... +.+..+.+|.. .|++++|+|++++|++++.||.|++||
T Consensus 222 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 222 KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 33333 999999999999999887 56777888776 799999999999999999999999999
Q ss_pred cCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 346 PMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
+.+++. ..+..|...+..+. +.+++..+++++.|+..+.|+
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 302 KDARTKLKTSEQLDQPISACC-FNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp TTTTEEEEECCCCSSCEEEEE-ECTTSSCEEEEECCCSTTCGG
T ss_pred CCCCcEEEEecCCCCCceEEE-ECCCCCeEEEEeccccccccc
Confidence 987754 55566666655544 455666677777666444333
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.5e-33 Score=252.52 Aligned_cols=312 Identities=9% Similarity=0.074 Sum_probs=233.1
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCCCcEEEEEcccCceeeeEEecCCCCc
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSADGQVRLGQIFEDGRMDTKRLGKHQGR 105 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 105 (439)
.++++++.|+.|++||+.+++.+.. +..| ..+.+++|+| ++++| ++++.|+.|++||+.+++... .+..+ ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-~~~~-~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~--~~~~~-~~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-IPVG-SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA--TVPAG-SS 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-EECS-SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE--EEECS-SS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-eecC-CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEE--EEECC-CC
Confidence 4688899999999999998876554 3455 4589999999 99877 677789999999998877653 34433 38
Q ss_pred eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEE
Q 013644 106 VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185 (439)
Q Consensus 106 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 185 (439)
+.+++|+|++++++++++.++.|++||+.+++....+.. ...+.+++|+|++..++++++.++.|++|
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------------GKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------SSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC------------CCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 999999999997777888889999999999887666542 33578999999985455788889999999
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEE-EEec-CCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
|+.+++... .... ...+..++|+|+++.+ +++. ++.|++||+.++ +
T Consensus 144 d~~~~~~~~---------------~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----------------~ 191 (391)
T 1l0q_A 144 NTVTKAVIN---------------TVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----------------S 191 (391)
T ss_dssp ETTTTEEEE---------------EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------E
T ss_pred ECCCCcEEE---------------EEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----------------e
Confidence 998765321 1122 3456899999999877 4554 899999999876 3
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeC---CCCeEEEEecCCCceeEeecccccceEEEeecCCCcEE-EEEecCC
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEK 339 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg 339 (439)
....+..+. .+.+++ |+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+
T Consensus 192 ~~~~~~~~~---~~~~~~-~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIA-VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp EEEEEECSS---EEEEEE-ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTT
T ss_pred EEEEEecCC---CccceE-ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCC
Confidence 334444322 478888 899999998887 68999999999999988888765 57899999999877 6778899
Q ss_pred eEEEeccCCCCC-CCCCCchhhh--------------hhhhcccc----------CcceEEEeCCCcEEEEEEeccccee
Q 013644 340 TVKLWAPMPTDF-PPLPDNAEKI--------------MKANKQGR----------EDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 340 ~i~iw~~~~~~~-~~~~~~~~~~--------------~~~~~~~~----------~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
.|++||+.++++ ..+..+..+. .....+.. +...+...+.|...++|++..+...
T Consensus 267 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~ 346 (391)
T 1l0q_A 267 TVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS 346 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE
T ss_pred EEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc
Confidence 999999987653 1221111110 00000110 1134566677888999999887654
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-35 Score=280.77 Aligned_cols=258 Identities=18% Similarity=0.241 Sum_probs=208.6
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcE
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFV 128 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i 128 (439)
.++.+|.+.|++++|+| ++++|++|+.||+|++|++..+.......+.+|..+|.+++|+|+ +. +|++++.||.|
T Consensus 3 ~~l~gH~~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEECCCS--SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSCE
T ss_pred eecccCcceeEEEEECC--CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCeE
Confidence 34679999999999999 999999999999999999986555555678899999999999987 66 68899999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
++||+.+++........ .|...|.+++|+|++ +.++++|+.||.|++||++.... ..
T Consensus 80 ~vwd~~~~~~~~~~~~~---------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-------------~~ 137 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHA---------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------------TS 137 (753)
T ss_dssp EEEEEETTEEEEEEEEC---------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-------------CC
T ss_pred EEEECCCCccccccccc---------CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-------------cc
Confidence 99999987632222211 167789999999982 38999999999999999987642 11
Q ss_pred cccccCCCccEEEEEEcc-------------CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC
Q 013644 208 RHLIGKNNIHITGLAYSN-------------TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 273 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (439)
......|...|.++.|+| ++.++++++ |+.|++||++++. ........+.+|..
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~------------~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------QTYVLESTLEGHSD 205 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT------------TEEEEEEEECCCSS
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc------------ccceeeeeecCCCC
Confidence 223367888999999999 478888876 9999999998752 11133456677776
Q ss_pred cceeeeEEeeCCC---CceEEEeCCCCeEEEEecCCCc-----eeEeecccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 274 SQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGK-----LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 274 ~~~v~~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
. |.+++ |+|+ +++|++|+.||.|++||+.+++ .......|...|++++|+|++++|++++.||.|++|+
T Consensus 206 ~--V~~l~-~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 206 W--VRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp C--EEEEE-ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred c--EEEEE-eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 5 99999 8999 9999999999999999998864 3344456888999999999999999999999999999
Q ss_pred cCC
Q 013644 346 PMP 348 (439)
Q Consensus 346 ~~~ 348 (439)
+..
T Consensus 283 ~~~ 285 (753)
T 3jro_A 283 ENL 285 (753)
T ss_dssp CCS
T ss_pred cCC
Confidence 874
No 115
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=254.31 Aligned_cols=271 Identities=14% Similarity=0.163 Sum_probs=206.0
Q ss_pred eeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC--CCcEEEEeCCCCcE
Q 013644 51 SYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDGFV 128 (439)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i 128 (439)
..+.+|...|++++|+| ++++|++++.||.|++|++..........+.+|...|.+++|+++ +. +|++++.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v 81 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKV 81 (379)
T ss_dssp CCEEECCCCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCE
T ss_pred EEecCCcccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEE
Confidence 44679999999999999 999999999999999999985555555678899999999999876 66 68899999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC-CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
++||+.+++......... |...|.+++|+|+. +.+|++++.|+.|++||++.... ..
T Consensus 82 ~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------~~ 139 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAV---------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------------TS 139 (379)
T ss_dssp EEEEEETTEEEEEEEECC---------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------------CC
T ss_pred EEEEcCCCceeEeeeecC---------CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------------ee
Confidence 999999886322222111 56779999999982 38999999999999999987531 11
Q ss_pred cccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
......|...|.+++|+|....... ... ..+++
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~----------------------------------------------~~~-~~~~~ 172 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDG----------------------------------------------EHN-GTKES 172 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC---------------------------------------------------------CTT
T ss_pred eEEecCCCCceEEEEEcCccccccc----------------------------------------------ccc-CCCCC
Confidence 1122455566666666654211000 000 24589
Q ss_pred ceEEEeCCCCeEEEEecCCCc----eeEeecccccceEEEeecCC---CcEEEEEecCCeEEEeccCCCCC------CCC
Q 013644 288 EYVMSGSDCGHLFIWKKKGGK----LVRLMVGDRHVVNQLEPHPH---IPMFATCGIEKTVKLWAPMPTDF------PPL 354 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~~~~------~~~ 354 (439)
++|++++.||.|++||+.+++ ....+.+|...|.+++|+|+ +++|++++.||.|++|++..+.. ...
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence 999999999999999998764 45678889999999999999 89999999999999999987631 222
Q ss_pred CCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 355 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
..+...+.... +.+++..+++++.||.+++|++......
T Consensus 253 ~~~~~~v~~~~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 253 EKFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SCCSSCEEEEE-ECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ccCCCcEEEEE-EcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 23445554444 5667778999999999999999865443
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-34 Score=258.34 Aligned_cols=257 Identities=14% Similarity=0.175 Sum_probs=205.9
Q ss_pred eeeeeeccccceEEEEECC-CCCEEEEecCCCeEEEEeCCCCc------ceeeeecCCcccEEEEEEeecCCC-cEEEEe
Q 013644 6 LCGKLHGHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRR------EKFSYLSGHLDNIFQTRIMPFTDD-RKIITS 77 (439)
Q Consensus 6 ~~~~l~~h~~~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~ 77 (439)
.+..+.+|.+.|++++|+| ++++|++|+.||.|++|++.++. .....+.+|...|.+++|+| ++ .+|+++
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~ 150 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSA 150 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEE
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEE
Confidence 4556889999999999999 99999999999999999998873 22344579999999999999 87 699999
Q ss_pred cCCCcEEEEEcccCceeeeEEe--cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCC
Q 013644 78 SADGQVRLGQIFEDGRMDTKRL--GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
+.|+.|++||+.+++.. ..+ ..|...|.+++|+|+++ +|++++.|+.|++||+++++....+...
T Consensus 151 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------- 217 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAV--LTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRP---------- 217 (402)
T ss_dssp ETTSCEEEEETTTTEEE--EEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECS----------
T ss_pred cCCCEEEEEECCCCCcc--EEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceeeeeccC----------
Confidence 99999999999887665 446 78999999999999998 5779999999999999998876665211
Q ss_pred cee-eeEEEeecCCCCcEEEEe---ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEE
Q 013644 156 NSI-RLNAIVIDPRNPNYFAVG---GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 231 (439)
Q Consensus 156 ~~~-~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 231 (439)
|.. .+.++.|+|++ .+|++| +.++.|++||+++.+. ........+...+.+++|+|++++|+
T Consensus 218 ~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEE-------------PLSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp SCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSS-------------CSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred CCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccC-------------CceEEeccCCCceeEEEEcCCCCEEE
Confidence 333 37889999986 888888 7999999999987652 01111134567799999999999886
Q ss_pred -Eec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce
Q 013644 232 -SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 232 -~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 309 (439)
+++ |+.|++|++.++. .....+..+.....+.+++ |+|++.+++++ ++.+++|++.++++
T Consensus 284 ~~g~~dg~i~i~d~~~~~---------------~~~~~l~~~~~~~~v~~~~-~sp~~~~~~s~--~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEA---------------PFLHYLSMFSSKESQRGMG-YMPKRGLEVNK--CEIARFYKLHERKC 345 (402)
T ss_dssp EEETTCSCEEEEEECSST---------------TCEEEEEEECCSSCCSEEE-ECCGGGSCGGG--TEEEEEEEEETTEE
T ss_pred EEEcCCCeEEEEEecCCC---------------cceEeecccccCCcccceE-Eecccccceec--ceeEEEEEcCCCcE
Confidence 454 9999999998762 1144555554444599999 89999998754 56999999987654
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=256.53 Aligned_cols=268 Identities=12% Similarity=0.012 Sum_probs=201.2
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.+.+.+|...|.+++|+|+| .++.+.+|+.+.. .... ..|...|.+++|+| +|.+||+++.||.|++|
T Consensus 45 ~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~--~~~~~~V~~vawSP--dG~~LAs~s~dg~V~iw 112 (588)
T 2j04_A 45 AKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLN--SQPVCYPRVCKPSP--IDDWMAVLSNNGNVSVF 112 (588)
T ss_dssp CSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSST--TSCSCCEEEEEECS--SSSCEEEEETTSCEEEE
T ss_pred cceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEee--cCCCCcEEEEEECC--CCCEEEEEeCCCcEEEE
Confidence 34568999999999999999 4555556554322 2222 26688999999999 99999999999999999
Q ss_pred EcccCceeeeEEecCCCC-----ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc-------eeeEEeeccCCCCCCC
Q 013644 87 QIFEDGRMDTKRLGKHQG-----RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA-------TRLFYCSSFSENSKQP 154 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~ 154 (439)
+... . ...+. |.. .|.+++|+|+|+ +|++|+.||+|++||+.++.. +..+.... .
T Consensus 113 d~~~--~--l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~-------~ 179 (588)
T 2j04_A 113 KDNK--M--LTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD-------A 179 (588)
T ss_dssp ETTE--E--EEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC-------T
T ss_pred eCCc--e--eeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCccccccceeeeeeeccc-------c
Confidence 9643 2 23355 555 599999999998 588999999999999998753 22222111 1
Q ss_pred CceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec
Q 013644 155 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 234 (439)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 234 (439)
.|...|.+++|+|++ +++++.|+.+++||+..+.... ....+..+|...|.+++|+ +..|++++
T Consensus 180 gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~-----------~~~tL~~~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 180 GSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP-----------VSRMIQNASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp TCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC-----------CEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred cccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc-----------ceeeecccccCcEEEEEEE--CCEEEEEe
Confidence 156789999999975 8889999999999998755100 0011214677889999999 68888888
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEe-CCCCcceeeeEEee--CCCCceEEEeCCCCeEEEEecCC-----
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFF--GPNDEYVMSGSDCGHLFIWKKKG----- 306 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~--s~~~~~l~~~~~dg~i~iwd~~~----- 306 (439)
++.|++||+.++ ....+. +|... +..+. + +|++..+++++.+|+ ++|....
T Consensus 244 ~~tIkLWd~~~~-----------------~~~~~~~gh~~~--V~~va-~~~s~d~~~La~a~edG~-klw~~d~~~~sp 302 (588)
T 2j04_A 244 PGYVHKIDLKNY-----------------SISSLKTGSLEN--FHIIP-LNHEKESTILLMSNKTSY-KVLLEDELHVTA 302 (588)
T ss_dssp SSEEEEEETTTT-----------------EEEEEECSCCSC--CCEEE-ETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred CCeEEEEECCCC-----------------eEEEEEcCCCce--EEEEE-eeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence 999999999875 222333 67765 88888 8 999999999999999 9998642
Q ss_pred ------------------CceeEeecccccceEEEeecCCCcEEEEEec
Q 013644 307 ------------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 337 (439)
Q Consensus 307 ------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 337 (439)
++.+..+.+ ...|.+++|||||+.+|+++.
T Consensus 303 d~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 111222222 456999999999999999874
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-34 Score=253.23 Aligned_cols=311 Identities=14% Similarity=0.127 Sum_probs=210.6
Q ss_pred eeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce--eeeEEecCCCCceEEEEEcc--CCCcEEEEeCCC
Q 013644 50 FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR--MDTKRLGKHQGRVYKLAVEP--GSPYIIYSCGED 125 (439)
Q Consensus 50 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~v~~i~~~~--~~~~~l~s~~~d 125 (439)
..++.+|.+.|++++|+| ++.+|++++.||.|++|++.++.. .....+.+|...|.+++|+| ++. +|++++.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~d 80 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYD 80 (351)
T ss_dssp CCEECCCSSCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred cccCcccccceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCC
Confidence 345679999999999999 999999999999999999986542 23455778999999999999 465 68899999
Q ss_pred CcEEEEEccCCCc---------eeeEEeeccCCCCCCCCceeeeEEEeecCC--CCcEEEEeecCceEEEEeCcCCcccC
Q 013644 126 GFVQHFDLRSDSA---------TRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYS 194 (439)
Q Consensus 126 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 194 (439)
|.|++||+++++. ...+. .|...|.+++|+|+ + .+|++++.||.|++||+++++.+.
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLN-----------DSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEEC-----------CCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT
T ss_pred CeEEEEecCCCcccccccCcceeeeec-----------ccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc
Confidence 9999999998743 22221 16778999999998 5 899999999999999999877544
Q ss_pred CCCCCCCcccccccccccCCCccEEEEEEccC---CCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeC
Q 013644 195 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG 270 (439)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (439)
.......... .......+...+.+++|+|+ +.++++++ ++.+.+|+...+ .......+.+
T Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 212 (351)
T 3f3f_A 149 SWTLTSEMKV--LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--------------KLHVAAKLPG 212 (351)
T ss_dssp CCEEEEEEES--CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--------------CEEEEEECCC
T ss_pred cccccccccc--cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--------------ceeeeeecCC
Confidence 3321111111 11122367788999999997 78888886 888877766544 1122455666
Q ss_pred CCCcceeeeEEeeCCCC----ceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEec----CCeEE
Q 013644 271 HRNSQTVKGVNFFGPND----EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI----EKTVK 342 (439)
Q Consensus 271 ~~~~~~v~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----dg~i~ 342 (439)
|... |.+++ |+|++ ++|++|+.||.|++||+.++........+...+.....++....++.+.. ...+.
T Consensus 213 h~~~--i~~~~-~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (351)
T 3f3f_A 213 HKSL--IRSIS-WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289 (351)
T ss_dssp CCSC--EEEEE-ECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred CCcc--eeEEE-ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence 7665 99999 89998 89999999999999999877665554444444445555555444444433 34455
Q ss_pred EeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 343 LWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 343 iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+|+....+. ..+.+|...+..+. +.+++..+++++.||.|++|++.+++...
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 290 LQSNLQVELLSEHDDHNGEVWSVS-WNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp -CCSEEEEEEEEECTTSSCEEEEE-ECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ecccccccEEEEEecccccEEEEE-EcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 555443332 44556767776665 45677899999999999999999876553
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.9e-34 Score=256.85 Aligned_cols=298 Identities=15% Similarity=0.197 Sum_probs=224.1
Q ss_pred cceEEEEECCCC----------CEEEEecC----CCeEEEEeCC--------------------------CCcceeeeec
Q 013644 15 GCVNAVEFNSTG----------DFLVSGSD----DKLVIFWDWK--------------------------DRREKFSYLS 54 (439)
Q Consensus 15 ~~I~~~~~s~~~----------~~l~t~~~----dg~i~iw~~~--------------------------~~~~~~~~~~ 54 (439)
-+..++.|.|+. .+|+.|+. ...|.+.++. +++.......
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 467889999865 45777754 3467777543 1111123345
Q ss_pred CCcccEEEEEEeecCC-CcEEEEecCCCcEEEEEcccC--------ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC
Q 013644 55 GHLDNIFQTRIMPFTD-DRKIITSSADGQVRLGQIFED--------GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED 125 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d 125 (439)
.|.+.|++++|+| + +.+|++++.+|.|++|++.+. .......+.+|...|.+++|+|+++.+|++++.|
T Consensus 126 ~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 126 NHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred cCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 7999999999999 7 678999999999999999761 2333456788999999999999998678899999
Q ss_pred CcEEEEEccCCCceee-EEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc
Q 013644 126 GFVQHFDLRSDSATRL-FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 204 (439)
Q Consensus 126 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 204 (439)
|.|++|++..+..... +.... ....|...|.+++|+|+++.+|++++.|+.|++||+++....
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~-----~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----------- 267 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----------- 267 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSE-----EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----------
T ss_pred CeEEEEeCCCCCCCCceeccce-----eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----------
Confidence 9999999998543211 11000 001267779999999966689999999999999999864200
Q ss_pred ccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC
Q 013644 205 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 284 (439)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 284 (439)
.....+..|... +.+++ |+
T Consensus 268 ----------------------------------------------------------~~~~~~~~~~~~--v~~i~-~~ 286 (430)
T 2xyi_A 268 ----------------------------------------------------------KPSHTVDAHTAE--VNCLS-FN 286 (430)
T ss_dssp ----------------------------------------------------------SCSEEEECCSSC--EEEEE-EC
T ss_pred ----------------------------------------------------------cceeEeecCCCC--eEEEE-eC
Confidence 122344455544 88888 79
Q ss_pred CCCc-eEEEeCCCCeEEEEecCC-CceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCCCC-----------
Q 013644 285 PNDE-YVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD----------- 350 (439)
Q Consensus 285 ~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~----------- 350 (439)
|+++ ++++|+.||.|++||+++ ..++..+.+|...|.+++|+|+++ +|++++.||.|++|++....
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 366 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccC
Confidence 9887 688999999999999987 567888999999999999999985 69999999999999997621
Q ss_pred ----CCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 351 ----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+..+.+|...+..+.+.......+++++.||.|++|++.+.
T Consensus 367 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 23345566667666654444448999999999999999766
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=249.77 Aligned_cols=287 Identities=14% Similarity=0.104 Sum_probs=215.7
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc---eeeeEE------------------------------------
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG---RMDTKR------------------------------------ 98 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~------------------------------------ 98 (439)
.++.+++|+| ++++|+++ .++.|++||+.+++ .+....
T Consensus 5 ~p~~~v~~s~--dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSR--DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECS--SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecC--CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 4788999999 99966665 57899999998887 322111
Q ss_pred ----------------ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc--CCCceeeEEeeccCCCCCCCCceeee
Q 013644 99 ----------------LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR--SDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 99 ----------------~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
..+|...|.+++|+|++++++++++.||.|++||+. +++....+.... +...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~~~v 152 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---------FSKRP 152 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---------CSSCE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---------CCCCc
Confidence 013444799999999999766899999999999999 787777765322 45679
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC---CCEEEEec-CC
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SELLISYN-DE 236 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~-d~ 236 (439)
.+++|+|++ .+|++|+.+|.+++|++.+++.... ....+.+|...|.+++|+|+ +++|++++ |+
T Consensus 153 ~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~ 220 (450)
T 2vdu_B 153 NAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKF-----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE 220 (450)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSC-----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred eEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccc-----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence 999999987 8999999999999999987653210 11233678899999999999 98998887 99
Q ss_pred eEEEEEccCCCCCCCCCCCccccccccccee-EeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.|++||+.++ ..... +.+|... |.+++ |+ ++++|++++.|+.|++||+.+++++..+..
T Consensus 221 ~i~vwd~~~~----------------~~~~~~~~~h~~~--v~~~~-~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 221 HIKISHYPQC----------------FIVDKWLFGHKHF--VSSIC-CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp CEEEEEESCT----------------TCEEEECCCCSSC--EEEEE-EC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCCC----------------ceeeeeecCCCCc--eEEEE-EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 9999999876 34444 4467665 99999 78 999999999999999999999998887763
Q ss_pred c-------------------------ccceEEEeecCCCcEEEEEe-cCCeEEEecc--CCC---CC-CCCCCchhhhhh
Q 013644 316 D-------------------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAP--MPT---DF-PPLPDNAEKIMK 363 (439)
Q Consensus 316 h-------------------------~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~--~~~---~~-~~~~~~~~~~~~ 363 (439)
+ ...|.+++|+|++++|++++ .|+.|++|++ ..+ +. ..+..+ ..+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS 359 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence 2 34689999999999999998 8999999999 433 11 223333 44444
Q ss_pred hhccccCcceEEEe-CC------CcEEEEEEeccc
Q 013644 364 ANKQGREDHSRITL-TP------DVIMHVLRLQRR 391 (439)
Q Consensus 364 ~~~~~~~~~~~~~~-s~------dg~v~~w~~~~~ 391 (439)
+.+.. +..+++. +. +..+.+|.+...
T Consensus 360 ~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 360 LSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEET--TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEecC--CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 44322 2344443 32 445788877543
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.9e-31 Score=236.76 Aligned_cols=293 Identities=11% Similarity=0.060 Sum_probs=222.8
Q ss_pred ccceeeeeeccccceEEEEECCCCCEE-EEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCC
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFL-VSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSAD 80 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d 80 (439)
+.++++.+.+|.. +.+++|+|+|++| ++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+| ++++|+ +++.+
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~-~~v~~~~~sp--dg~~l~~~~~~~ 95 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAG-SSPQGVAVSP--DGKQVYVTNMAS 95 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEETTT
T ss_pred CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECC-CCccceEECC--CCCEEEEEECCC
Confidence 4456777877754 8999999999876 67778999999999988766554 333 3899999999 999875 55567
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
+.|++||+.+++.... +. +...+.+++|+|+++.++++++.++.|++||+.+++....+.. ...+
T Consensus 96 ~~v~v~d~~~~~~~~~--~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------~~~~ 160 (391)
T 1l0q_A 96 STLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------------GRSP 160 (391)
T ss_dssp TEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------CSSE
T ss_pred CEEEEEECCCCeEEEE--Ee-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec------------CCCc
Confidence 9999999988766533 43 3457899999999997768999999999999999887766543 2346
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec----CC
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DE 236 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----d~ 236 (439)
.+++|+|++..++++++.++.|++||+++++... . ..+...+.+++|+|+++++++++ ++
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~---------------~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID---------------T-VKVEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---------------E-EECSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE---------------E-EecCCCccceEECCCCCEEEEEecCcCCC
Confidence 8999999985555788889999999998765321 1 12355789999999998777663 78
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEecCCCceeEeecc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.|++||+.++ +....+..+.. +.+++ ++|++++| ++++.|+.|++||+.+++.+..+..
T Consensus 225 ~v~~~d~~~~----------------~~~~~~~~~~~---~~~~~-~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 225 TVSMIDTGTN----------------KITARIPVGPD---PAGIA-VTPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp EEEEEETTTT----------------EEEEEEECCSS---EEEEE-ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cEEEEECCCC----------------eEEEEEecCCC---ccEEE-EccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 9999999876 45556665543 67788 89999877 6778899999999999999888876
Q ss_pred cccceE---EEe------------ecCC--------C--cEEEEEecCCeEEEeccCCCCC
Q 013644 316 DRHVVN---QLE------------PHPH--------I--PMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 316 h~~~v~---~~~------------~s~~--------~--~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
|..+.. .+. |+.+ . ..+...+.|..+++|++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 285 GKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 654321 122 2211 1 2466667788999999976543
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=244.30 Aligned_cols=265 Identities=9% Similarity=0.059 Sum_probs=195.8
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC---------CCcee
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS---------DSATR 140 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~ 140 (439)
++.+|++|+.||+|++||+.+++.+.. +. ...|.++.|+|. +++++.|++|++|+... ++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~--~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITT--IT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEE--EE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEE--Ee--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 789999999999999999988876643 32 467788888887 67999999999997763 22222
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecC--CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
.+.. .|...|.+++|+| ++ .++++++.||.|++||+++++.. ......+...+
T Consensus 119 ~~~~----------~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~--------------~~~~~~~~~~i 173 (343)
T 3lrv_A 119 EIEV----------DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY--------------IVHSAKSDVEY 173 (343)
T ss_dssp EEEC----------CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE--------------EEECCCSSCCC
T ss_pred Eeec----------CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE--------------EEEecCCCCce
Confidence 2211 1456799999999 87 89999999999999999987631 11113445679
Q ss_pred EEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccc-eeEeC-CCCcceeeeEEeeCCCCceEEEeCC
Q 013644 219 TGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSG-HRNSQTVKGVNFFGPNDEYVMSGSD 295 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~ 295 (439)
.+++|+|++.+|++++ |+.|++||++++ ... ..+.. |... |.+++ |+|++.+|++++.
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~----------------~~~~~~~~~~h~~~--v~~l~-fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSP----------------DQASSRFPVDEEAK--IKEVK-FADNGYWMVVECD 234 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCT----------------TSCCEECCCCTTSC--EEEEE-ECTTSSEEEEEES
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCC----------------CCCccEEeccCCCC--EEEEE-EeCCCCEEEEEeC
Confidence 9999999999999986 999999999877 333 55666 6655 99999 8999999999994
Q ss_pred CCeEEEEecCCCceeEeecc---cccceE--EEeecCCCcEEEEEec-CCeEEEeccCCCCCCCCCCchhhhhhhhcccc
Q 013644 296 CGHLFIWKKKGGKLVRLMVG---DRHVVN--QLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 369 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~---h~~~v~--~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (439)
+.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.|++|++...... +.. ..+.... +..
T Consensus 235 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~-~~~--~~~~~~~-~~~ 309 (343)
T 3lrv_A 235 -QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN-WTK--DEESALC-LQS 309 (343)
T ss_dssp -SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS-EEE--EEEEECC-C--
T ss_pred -CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc-eEe--cCceeEe-cCc
Confidence 5999999999887665554 434444 6999999999999998 999999999654321 100 1111111 222
Q ss_pred ---CcceEEEeCCCcEEEEEEeccc
Q 013644 370 ---EDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 370 ---~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+...+++++.||.+.++-....
T Consensus 310 ~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 310 DTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp --CCCCEEEEEEETTEEEEEEECSS
T ss_pred cccccceeEEEecCCceEEEEecCC
Confidence 4557888899999888865443
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.2e-31 Score=243.48 Aligned_cols=324 Identities=11% Similarity=0.042 Sum_probs=233.8
Q ss_pred cccceEEEE---ECCCCCEEEEe--------------cCCCeEEEEeC--CCCc-ceeeeecCCcccEEEEEEeecCCCc
Q 013644 13 HKGCVNAVE---FNSTGDFLVSG--------------SDDKLVIFWDW--KDRR-EKFSYLSGHLDNIFQTRIMPFTDDR 72 (439)
Q Consensus 13 h~~~I~~~~---~s~~~~~l~t~--------------~~dg~i~iw~~--~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~ 72 (439)
....+..++ |+|+++.++.. +.++.++||.+ .++. .....+..+ ..+.+++|+| ++.
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--~~~ 135 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFID--NTR 135 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESS--SSE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeC--CCe
Confidence 345678888 88887765542 22332344444 3332 222223333 4566899999 899
Q ss_pred EEEEecCCCcEEEEEcccCceeeeE---EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 73 KIITSSADGQVRLGQIFEDGRMDTK---RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
++++++.++.|++||+.+++..... .+.+|...|.+++|+|++. ++++++.|+.|++||+++++....+..
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~----- 209 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDL----- 209 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEEC-----
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcC-----
Confidence 9999999999999999887765321 2457888999999999886 788999999999999999887766653
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
+...+.+++|+|++..++++++.++.|++||+++++.... .. ....+.+++|+|++++
T Consensus 210 ------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~---------------~~-~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 210 ------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK---------------TD-KIGLPRGLLLSKDGKE 267 (433)
T ss_dssp ------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---------------CC-CCSEEEEEEECTTSSE
T ss_pred ------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE---------------ec-CCCCceEEEEcCCCCE
Confidence 4556899999998855556776899999999987653211 11 2345899999999988
Q ss_pred EEEec---------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCce-EEEeCCCCeE
Q 013644 230 LISYN---------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHL 299 (439)
Q Consensus 230 l~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~-l~~~~~dg~i 299 (439)
+++++ |+.|++||+.++ +....+ .+.. .+.+++ |+|++++ +++++.++.|
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~----------------~~~~~~-~~~~--~~~~~~-~~~~g~~l~~~~~~~~~v 327 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKE----------------KLIDTI-GPPG--NKRHIV-SGNTENKIYVSDMCCSKI 327 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTT----------------EEEEEE-EEEE--CEEEEE-ECSSTTEEEEEETTTTEE
T ss_pred EEEEECCCCccccCCCeEEEEECCCC----------------cEEeec-cCCC--CcceEE-ECCCCCEEEEEecCCCEE
Confidence 87765 679999999865 222222 2222 377888 8999975 4667899999
Q ss_pred EEEecCCCceeEeecccccceEEEeecCCCcEEEEEec---------------CCeEEEeccCCCCCC-CCCCchhhhhh
Q 013644 300 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---------------EKTVKLWAPMPTDFP-PLPDNAEKIMK 363 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iw~~~~~~~~-~~~~~~~~~~~ 363 (439)
++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.. .+.. ...+..
T Consensus 328 ~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~ 405 (433)
T 3bws_A 328 EVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTG 405 (433)
T ss_dssp EEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEE
T ss_pred EEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCce
Confidence 999999998888776 6678999999999998888876 579999999877652 2222 222333
Q ss_pred hhccccCcceEEEe-CCCcEEEEEEecc
Q 013644 364 ANKQGREDHSRITL-TPDVIMHVLRLQR 390 (439)
Q Consensus 364 ~~~~~~~~~~~~~~-s~dg~v~~w~~~~ 390 (439)
.. +.+++..+++. +.|+.+++|++..
T Consensus 406 ~~-~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 406 LD-VSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EE-ECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EE-EcCCCCEEEEEECCCCeEEEEEecC
Confidence 33 34555565555 4599999999753
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=7.2e-32 Score=249.05 Aligned_cols=336 Identities=10% Similarity=0.118 Sum_probs=245.3
Q ss_pred EECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEc--ccCceeeeEE
Q 013644 21 EFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI--FEDGRMDTKR 98 (439)
Q Consensus 21 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~--~~~~~~~~~~ 98 (439)
+|+|++.++++++.|++|.+||..+++.+..+..++. +..++|+| ++++|++++.|++|.+||+ .+.+.+ ..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~--~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKV--AE 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEE--EE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEE--EE
Confidence 4889999999999999999999999887666533554 88999999 9999999999999999999 665554 34
Q ss_pred ecCCCCceEEEEEcc----CCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc-eeeeEEEeecCCCCcEE
Q 013644 99 LGKHQGRVYKLAVEP----GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN-SIRLNAIVIDPRNPNYF 173 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l 173 (439)
+. +...+..++|+| ++++++++...+++|.+||..+++.+..+......... ...| ...+.++.++|+++.++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~-~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT-QTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS-CCEESCCCEEEEEECSSSSEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc-cccccCCceEEEEECCCCCEEE
Confidence 44 445679999999 99865544446899999999999888877642211000 0001 22588999999887888
Q ss_pred EEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCC
Q 013644 174 AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 174 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~ 251 (439)
++...++.|.+||+.+.+.+. ... ..+...+..+.|+|+|++++++ . ++.|.+||..++
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~-------------~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----- 356 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLT-------------VTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----- 356 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCE-------------EEE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----
T ss_pred EEECCCCeEEEEEecCCCcce-------------eEE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----
Confidence 888999999999998754211 001 1234557789999999976655 4 889999999887
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCC-CceEEEeC-CCCeEEEEecCC-------CceeEeecccccceEE
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGS-DCGHLFIWKKKG-------GKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~ 322 (439)
+....+.....+..-....|++|+ +.+++++. .|++|.+||+.+ +++++++.+|...+..
T Consensus 357 -----------~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~ 425 (543)
T 1nir_A 357 -----------RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF 425 (543)
T ss_dssp -----------EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred -----------eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceE
Confidence 455555542211111222335676 66777775 689999999998 8999999999888899
Q ss_pred EeecCCCcEEEEEe-------cCCeEEEeccCCCCCC-CC---------CCchhhhhhhhccccCcc-eEEEe----CCC
Q 013644 323 LEPHPHIPMFATCG-------IEKTVKLWAPMPTDFP-PL---------PDNAEKIMKANKQGREDH-SRITL----TPD 380 (439)
Q Consensus 323 ~~~s~~~~~l~s~~-------~dg~i~iw~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~-~~~~~----s~d 380 (439)
++++|++++|++++ .+++|.+||+.+.+.. .. ..+...+.... +..++. ..++. +.|
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~g~~~~~s~~~~~~~~ 504 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE-YNKRGDEVWFSVWNGKNDS 504 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE-ECSSSSEEEEEEECCTTSC
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc-CCCCCCEEEEEeecCCCCC
Confidence 99999999999987 3789999999887753 21 23334444444 334444 34442 357
Q ss_pred cEEEEEEecccceee
Q 013644 381 VIMHVLRLQRRQTLA 395 (439)
Q Consensus 381 g~v~~w~~~~~~~~~ 395 (439)
+.|.+||.++++...
T Consensus 505 ~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 505 SALVVVDDKTLKLKA 519 (543)
T ss_dssp CEEEEEETTTTEEEE
T ss_pred CeEEEEECCCceEEE
Confidence 999999999998775
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.2e-30 Score=218.63 Aligned_cols=292 Identities=12% Similarity=0.128 Sum_probs=187.5
Q ss_pred cceeeeeecccc----ceEEEEECCCCC---EEEEecCCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCcEE
Q 013644 4 INLCGKLHGHKG----CVNAVEFNSTGD---FLVSGSDDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDRKI 74 (439)
Q Consensus 4 ~~~~~~l~~h~~----~I~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l 74 (439)
++++..|+.-.+ .+.++.|-..|- .+++++. ..|++|+..+.. .....+..|+.+|..+.+.| +..-|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~ 101 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVP--DVYNL 101 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCT--TCCSC
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcC--cccce
Confidence 566667765433 466677766543 5778876 689999999873 23334578988899888888 54433
Q ss_pred EEecC-CCcE-EEEEcc--cC--ceeeeEEecCCCCceEEEEEccCCCcEEEEeC--CCCcEEEEEccC-CCceeeEEee
Q 013644 75 ITSSA-DGQV-RLGQIF--ED--GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG--EDGFVQHFDLRS-DSATRLFYCS 145 (439)
Q Consensus 75 ~s~~~-dg~i-~iw~~~--~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~-~~~~~~~~~~ 145 (439)
++... +=.+ .++.+. .. .........+|...|..+ ++++ ++.+++ .|+.|++|++.. ++.+..+..
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~-lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~- 176 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR-LVSSSGTLSDQQVEVMTFAEDGGGKENQFL- 176 (356)
T ss_dssp EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE-EEEEESSSTTCEEEEEEECTTSCEEEEEEE-
T ss_pred eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc-EEEecccCCCCcEEEEEECCCCceeeeecc-
Confidence 32211 1111 111111 11 001111123344445443 4554 555533 689999999844 665555444
Q ss_pred ccCCCCCCCCceeeeEEEeecC--CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEE
Q 013644 146 SFSENSKQPMNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 223 (439)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 223 (439)
|...+..++|+| .++.+|++|+.|++|++||+.+++.+..+... ..+...+.+++|
T Consensus 177 ----------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~------------~~~v~~v~~vaf 234 (356)
T 2w18_A 177 ----------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID------------DSYQASVCHKAY 234 (356)
T ss_dssp ----------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC------------C---CCCEEEEE
T ss_pred ----------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC------------CcceeeeEEEEE
Confidence 455567777777 23489999999999999999998743322100 112346778899
Q ss_pred ccCCCEEE------------Eec-CCeEEEEEccCCCCCCCCCCCcccccccccceeE-----eCCCCcceeeeEEeeCC
Q 013644 224 SNTSELLI------------SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTVKGVNFFGP 285 (439)
Q Consensus 224 ~~~~~~l~------------~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~s~ 285 (439)
+|+|++++ +++ |++|++||..++ +.+..+ .+|... +.+.. .
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg----------------k~l~v~~~~~p~Gh~~~--~lsg~---~ 293 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT----------------LSVGVMLYCLPPGQAGR--FLEGD---V 293 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTT----------------EEEEEEEECCCTTCCCC--EEEEE---E
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC----------------EEEEEEEeeccCCCcce--eEccc---c
Confidence 99998774 454 889999999876 333332 244332 33333 3
Q ss_pred CCceEEEeCCCCeEEEEecCCCceeEeecccccceE-EEeecCCCcEEEEEecCCeEEEecc
Q 013644 286 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 286 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
++.++++|+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+||++
T Consensus 294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 478899999999999999999999999999987554 6899999999999999999999986
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.5e-31 Score=237.27 Aligned_cols=270 Identities=10% Similarity=0.049 Sum_probs=174.2
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce----eeeecCCcccEEEEEEeec------CCCcEEEEecCCCcE
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK----FSYLSGHLDNIFQTRIMPF------TDDRKIITSSADGQV 83 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~h~~~v~~~~~~~~------~~~~~l~s~~~dg~i 83 (439)
...+....+++++.+||+|+.|++|+|||..++... ...+.+|.+.|++++|+|. .++++|++++.|++|
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 333444444556778999999999999999887543 2346799999999999972 167899999999999
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC--------------C
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS--------------E 149 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~ 149 (439)
+|||+.++... ..+..|...|.+++|+|++..+|++++.|++|++||+++++........... .
T Consensus 169 ~~Wd~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 169 IIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEETTEEE--EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EEEECCCCcee--eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999876655 3466788999999999998778999999999999999987654433211100 0
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCC-Cc--cccccc-ccccCCCccEEEEEEcc
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT-PV--DTFCPR-HLIGKNNIHITGLAYSN 225 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~--~~~~~~-~~~~~~~~~i~~~~~~~ 225 (439)
......|...+.++.|.+..+..+++++.|+.+++||+..++....+.... .. ..+.+. .....+...+..+.+.+
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 011123566788888874334899999999999999998876443321110 00 000000 01111222233333333
Q ss_pred C-CCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEe
Q 013644 226 T-SELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 303 (439)
Q Consensus 226 ~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd 303 (439)
. +.++++++ |+.|++||+.++ .....+..|... |.+++ |+|+|++||+++.+| +.+|.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~----------------~~~~~~~~~~~~--V~sva-fspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEK----------------DSNSIPIQLGMP--IVDFC-WHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCT----------------TCCEEEEECSSC--EEEEE-ECTTSSEEEEEESSE-EEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCC----------------cEEEEecCCCCc--EEEEE-EcCCCCEEEEEeCCC-eEEEE
Confidence 3 34566666 999999999877 455666666654 99999 899999999998765 55665
Q ss_pred cC
Q 013644 304 KK 305 (439)
Q Consensus 304 ~~ 305 (439)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 43
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=1.7e-30 Score=233.13 Aligned_cols=295 Identities=11% Similarity=0.034 Sum_probs=215.9
Q ss_pred ccceEEEEECCCC-CEEEEec----CCC----eEEEEeC--CCCccee-eeecCCcccEEEEEEeec------------C
Q 013644 14 KGCVNAVEFNSTG-DFLVSGS----DDK----LVIFWDW--KDRREKF-SYLSGHLDNIFQTRIMPF------------T 69 (439)
Q Consensus 14 ~~~I~~~~~s~~~-~~l~t~~----~dg----~i~iw~~--~~~~~~~-~~~~~h~~~v~~~~~~~~------------~ 69 (439)
...|....|.+.| +++++|+ .+| .|+|||+ .+++.+. ..+.+|...+..+++.+. .
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3567788888877 4666775 567 8999999 8877552 335678877777766641 0
Q ss_pred CCcEEEEecCC------CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC---cEEEEEccCCCcee
Q 013644 70 DDRKIITSSAD------GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG---FVQHFDLRSDSATR 140 (439)
Q Consensus 70 ~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~ 140 (439)
.+..++.++.+ +.|++||+.... . ..+.+|...+.+++|+|++++ |++++.++ .|++||+.+++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~--~~l~~~~~~v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-Q--FVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-C--EEEEEESSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-C--EEEeCCCCcceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEEE
Confidence 15666666554 799999996433 3 446678899999999999985 55666664 99999999887653
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
.. . +...+.+++|+|++..++++++.++ .|++||+.+++. ..+..+...+
T Consensus 218 l~-~-----------~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~~ 269 (415)
T 2hqs_A 218 VA-S-----------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----------------RQVTDGRSNN 269 (415)
T ss_dssp EE-C-----------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------EECCCCSSCE
T ss_pred ee-c-----------CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE----------------EeCcCCCCcc
Confidence 22 1 3456899999999843444776655 499999987652 1224566789
Q ss_pred EEEEEccCCCEEEEec--CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC
Q 013644 219 TGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~ 294 (439)
.+++|+|+|+.|+.++ ++ .|++||+.++ ....+..+.. .+.++. |+|+|++|++++
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~-----------------~~~~l~~~~~--~~~~~~-~spdG~~l~~~~ 329 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-----------------APQRITWEGS--QNQDAD-VSSDGKFMVMVS 329 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----------------CCEECCCSSS--EEEEEE-ECTTSSEEEEEE
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCC-----------------CEEEEecCCC--cccCeE-ECCCCCEEEEEE
Confidence 9999999999887765 34 7888888765 2233333333 377788 899999998887
Q ss_pred CC---CeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCC---eEEEeccCCCCCCCCCCchhhhh
Q 013644 295 DC---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIM 362 (439)
Q Consensus 295 ~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~ 362 (439)
.+ ..|++||+.+++.. .+..|. .+.+++|+|+|++|++++.++ .|.+|++.++....+..+...+.
T Consensus 330 ~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 330 SNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 401 (415)
T ss_dssp ECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred CcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCc
Confidence 64 58999999988774 455554 899999999999999888877 89999998777766666655553
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=6.4e-28 Score=222.75 Aligned_cols=312 Identities=10% Similarity=0.022 Sum_probs=228.2
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeC--CCCcceeeeecCCcccEEEEEEeecC--CCcEEEEec
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDW--KDRREKFSYLSGHLDNIFQTRIMPFT--DDRKIITSS 78 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~ 78 (439)
+.+++.++..+.. +.+++|+|||++|++++.|+.|++||+ .+++.+..+ . +...+..++|+|+. ++++|++++
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEeCCCcCCCCCEEEEEE
Confidence 4567778874333 899999999999999999999999999 776655554 3 44567999998621 688888887
Q ss_pred C-CCcEEEEEcccCceeeeEEecC--------CC-CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC
Q 013644 79 A-DGQVRLGQIFEDGRMDTKRLGK--------HQ-GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148 (439)
Q Consensus 79 ~-dg~i~iw~~~~~~~~~~~~~~~--------~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 148 (439)
. +++|.+||..+.+.+......+ |. ..+..+.++|+++.++++...++.|.+||+.+.+........
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--- 321 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--- 321 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---
Confidence 4 8999999998887764433321 22 378999999999888999999999999999987654422111
Q ss_pred CCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-C
Q 013644 149 ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-S 227 (439)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 227 (439)
+...+..++|+|++..+++++..++.|.+||..++++...+... ...|......+ ++|+ +
T Consensus 322 -------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-----------~~ph~g~g~~~-~~p~~g 382 (543)
T 1nir_A 322 -------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-----------KTPHPGRGANF-VHPKYG 382 (543)
T ss_dssp -------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-----------SSBCCTTCEEE-EETTTE
T ss_pred -------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC-----------CCCCCCCCccc-CCCCCc
Confidence 12336678999998445556667899999999988753322110 01233333333 4676 6
Q ss_pred CEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-------CCCe
Q 013644 228 ELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-------DCGH 298 (439)
Q Consensus 228 ~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-------~dg~ 298 (439)
.+++++. ++.|.+||+.+...+ -...+.++.+.++... +..+. ++|++++|++++ .+++
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~~~~~---------~~~~~~v~~l~~~g~~--~~~v~-~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDPKNHP---------QYAWKKVAELQGQGGG--SLFIK-THPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCT---------TTBTSEEEEEECSCSC--CCCEE-CCTTCCEEEECCTTCSSHHHHTC
T ss_pred cEEEeccCCCceEEEEEeCCCCCc---------hhcCeEEEEEEcCCCC--ceEEE-cCCCCCcEEEecCCCCCcccCce
Confidence 7777764 799999999863111 0113677888887755 67777 899999999987 2679
Q ss_pred EEEEecCCCcee-Eee--------cccccceEEEeecCCCcEEEEEe-----cCCeEEEeccCCCCC
Q 013644 299 LFIWKKKGGKLV-RLM--------VGDRHVVNQLEPHPHIPMFATCG-----IEKTVKLWAPMPTDF 351 (439)
Q Consensus 299 i~iwd~~~~~~~-~~~--------~~h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~ 351 (439)
|.+||+.+++.. ..+ ..+...+..++|+|+|+.|+.+. .|+.|.|||.+++++
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 999999999876 443 34567899999999999877653 479999999998875
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.7e-28 Score=205.68 Aligned_cols=281 Identities=13% Similarity=0.043 Sum_probs=183.4
Q ss_pred cEEEEEEeecCCCc--EEEEecCCCcEEEEEcccCc-eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEE-EEEcc
Q 013644 59 NIFQTRIMPFTDDR--KIITSSADGQVRLGQIFEDG-RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ-HFDLR 134 (439)
Q Consensus 59 ~v~~~~~~~~~~~~--~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~-iwd~~ 134 (439)
.+.++.|-.. ..+ .+++++ ...|++|+..+.. ......+..|..+|..+.+.|+...++..+-.+-.+. ++-+.
T Consensus 41 ~~~~~~~~~~-~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERA-GCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC-----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccC-CCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 3455555441 221 455555 4699999998862 1334678889999999999998766554443221111 11111
Q ss_pred CCCc----eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee--cCceEEEEeCcC-CcccCCCCCCCCcccccc
Q 013644 135 SDSA----TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRK-CHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 135 ~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~ 207 (439)
-... .+.+.... +...+..+ +++ +++.+++ .|+.|++|++.. ++.
T Consensus 119 ~spd~~~~~~~l~s~g---------~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG~~--------------- 170 (356)
T 2w18_A 119 CSSDDESEKQVLLKSG---------NIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDGGG--------------- 170 (356)
T ss_dssp C------CCEEEEEEE---------EEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTSCE---------------
T ss_pred ECCCccccccEEEeCC---------CeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCCce---------------
Confidence 1000 11111000 22334333 332 5555533 478888888843 331
Q ss_pred cccccCCCccEEEEEEcc---CCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-cceeeeEEe
Q 013644 208 RHLIGKNNIHITGLAYSN---TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNF 282 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 282 (439)
......|...++.++|++ ++.+|++++ |++|++||+.++ +.++++.+|.. ...+.+++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG----------------k~l~tL~g~~~~v~~v~~va- 233 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG----------------QLLKKMHIDDSYQASVCHKA- 233 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC----------------CEEEEEECCC---CCCEEEE-
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC----------------cEEEEEcCCCcceeeeEEEE-
Confidence 112246777888888988 779999987 999999999988 67778876543 23466677
Q ss_pred eCCCCceE------------EEeCCCCeEEEEecCCCceeEee-----cccccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 283 FGPNDEYV------------MSGSDCGHLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 283 ~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
|+|+|+++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++|+++.|++|+|||
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEE
Confidence 79999986 56788999999999999887665 3666655544444 77999999999999999
Q ss_pred cCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEe
Q 013644 346 PMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 388 (439)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~ 388 (439)
+.+++. ..+.+|...+.....+++++..+++++.|++|++|++
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 998875 6677787776654457888899999999999999986
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.5e-28 Score=215.94 Aligned_cols=265 Identities=11% Similarity=0.079 Sum_probs=201.8
Q ss_pred eeeeccccceEEEEECC--------------CCCEEEEecCC------CeEEEEeCCCCcceeeeecCCcccEEEEEEee
Q 013644 8 GKLHGHKGCVNAVEFNS--------------TGDFLVSGSDD------KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP 67 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~--------------~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~ 67 (439)
..+.+|...+..+++++ .+..++.++.+ +.|++||+... ... .+.+|...+.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~-~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQF-VVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCE-EEEEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCE-EEeCCCCcceeeEEcC
Confidence 45888888888887765 15566665543 79999999754 333 3467889999999999
Q ss_pred cCCCcEEEEecCCC---cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc--EEEEEccCCCceeeE
Q 013644 68 FTDDRKIITSSADG---QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF--VQHFDLRSDSATRLF 142 (439)
Q Consensus 68 ~~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~ 142 (439)
++++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+++.++++++.++. |++||+.+++... +
T Consensus 189 --dg~~la~~s~~~~~~~i~~~d~~tg~~~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~-l 262 (415)
T 2hqs_A 189 --DGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-V 262 (415)
T ss_dssp --TSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-C
T ss_pred --CCCEEEEEEecCCCcEEEEEECCCCcEE---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe-C
Confidence 999999999875 9999999887653 355678899999999999976667777665 9999998876532 2
Q ss_pred EeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-Cc--eEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEE
Q 013644 143 YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 219 (439)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (439)
.. +...+.+++|+|++ +.|++++. ++ .|++||+.+++.. .+..+...+.
T Consensus 263 ~~-----------~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~----------------~l~~~~~~~~ 314 (415)
T 2hqs_A 263 TD-----------GRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ----------------RITWEGSQNQ 314 (415)
T ss_dssp CC-----------CSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE----------------ECCCSSSEEE
T ss_pred cC-----------CCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE----------------EEecCCCccc
Confidence 11 45568999999998 66666654 45 6778888775421 1133456788
Q ss_pred EEEEccCCCEEEEec-C---CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC
Q 013644 220 GLAYSNTSELLISYN-D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 295 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~ 295 (439)
.++|+|+|++|+.++ + ..|++||+.++ ....+..+. .+.+++ |+|+|++|++++.
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-----------------~~~~l~~~~---~~~~~~-~spdg~~l~~~s~ 373 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATG-----------------GVQVLSSTF---LDETPS-LAPNGTMVIYSSS 373 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTC-----------------CEEECCCSS---SCEEEE-ECTTSSEEEEEEE
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCC-----------------CEEEecCCC---CcCCeE-EcCCCCEEEEEEc
Confidence 999999999988775 3 58999999876 223344443 377888 8999999998887
Q ss_pred CC---eEEEEecCCCceeEeecccccceEEEeecCCCc
Q 013644 296 CG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 330 (439)
Q Consensus 296 dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~ 330 (439)
++ .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus 374 ~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 374 QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 76 89999987 666778888999999999999754
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=1.4e-27 Score=238.93 Aligned_cols=343 Identities=10% Similarity=0.003 Sum_probs=242.3
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCC------CeEEEEeCCCCcceeeeecCCcccE-------EEEEEeecCCCcE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDD------KLVIFWDWKDRREKFSYLSGHLDNI-------FQTRIMPFTDDRK 73 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~ 73 (439)
.+.|.+|...|.+++|||||++||+++.+ ..|++|++.+++ . ..+..|...+ ..++|+| ++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~-~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~l 120 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-I-KRITYFSGKSTGRRMFTDVAGFDP--DGNL 120 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-E-EECCCCCEEEETTEECSEEEEECT--TCCE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-e-EEcccCCCcccccccccccccCCC--CCEE
Confidence 46788899999999999999999987543 489999998775 2 3357888888 9999999 9997
Q ss_pred EEEecCC------CcEEEEEcccCceee-----------------------------------------------eEEec
Q 013644 74 IITSSAD------GQVRLGQIFEDGRMD-----------------------------------------------TKRLG 100 (439)
Q Consensus 74 l~s~~~d------g~i~iw~~~~~~~~~-----------------------------------------------~~~~~ 100 (439)
+++++.+ ..|.+|++.++.... ...+.
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~ 200 (1045)
T 1k32_A 121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 200 (1045)
T ss_dssp EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence 7777654 357777775543210 01234
Q ss_pred CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC
Q 013644 101 KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 101 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+.. +. .+...+|+|++ ..++.+ .+
T Consensus 201 ~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-----------~~-~~~~~~~SpDG-~~la~~-~~ 264 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTS-----------FT-DYYPRHLNTDG-RRILFS-KG 264 (1045)
T ss_dssp CCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCC-----------CC-SSCEEEEEESS-SCEEEE-ET
T ss_pred CCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecC-----------CC-CcceeeEcCCC-CEEEEE-eC
Confidence 56778888899887 4777888899999998764 222222221 11 24567999987 666666 58
Q ss_pred ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc-cCCCEEEEecCCeEEEEEccCCCCCCCCCCCccc
Q 013644 180 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPED 258 (439)
Q Consensus 180 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 258 (439)
+.|++||+...... .+....... ......+...+..++|+ |+|+.|+.+.++.+++|+...+
T Consensus 265 ~~i~~~d~~~~~l~-~l~~~~~~~----~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~------------ 327 (1045)
T 1k32_A 265 GSIYIFNPDTEKIE-KIEIGDLES----PEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT------------ 327 (1045)
T ss_dssp TEEEEECTTTCCEE-ECCCCCCCB----CCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS------------
T ss_pred CEEEEecCCceEee-eeccCcccc----cccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC------------
Confidence 89999998443321 111100000 00011244568899999 9999999888999999998765
Q ss_pred ccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEE-EEecCCCceeEeecccccceEEEeecCCCcEEEEEec
Q 013644 259 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF-IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 337 (439)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 337 (439)
....+..+.. ..+..+. |+ +|+.|++++.++.+. +|++.+++..... +|...+..++|+|||++|++++.
T Consensus 328 -----~~~~~~~~~~-~~~~~~~-~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 328 -----YVLKVPEPLR-IRYVRRG-GD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -----BEEECSCCSC-EEEEEEC-SS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET
T ss_pred -----ceEEccCCCc-ceEEeee-Ec-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECC
Confidence 2223334433 1478888 78 999999988888899 9999877665444 78789999999999999999999
Q ss_pred CCeEEEeccCCCCCCCCC-CchhhhhhhhccccCcceEEEeCCC----------cEEEEEEecccceeee
Q 013644 338 EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPD----------VIMHVLRLQRRQTLAY 396 (439)
Q Consensus 338 dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d----------g~v~~w~~~~~~~~~~ 396 (439)
++.|++||+.+++...+. ++...+.... +++++..++..+.+ +.+++|++.+++...+
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~-~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFT-ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEE-ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceE-ECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 999999999887764333 4444444443 46667767666543 4899999988764433
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.8e-27 Score=230.77 Aligned_cols=293 Identities=13% Similarity=0.123 Sum_probs=205.2
Q ss_pred ccceEEEEECCCCCEEEEecC-CC-----eEEEEeCCCCcceeeeecCCc------------------------ccEEEE
Q 013644 14 KGCVNAVEFNSTGDFLVSGSD-DK-----LVIFWDWKDRREKFSYLSGHL------------------------DNIFQT 63 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~h~------------------------~~v~~~ 63 (439)
...|.+++|+|||++|++++. |+ .|++||+.+++.... +..+. ..+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456999999999999999988 88 999999988765433 23322 237899
Q ss_pred EEeecCCCcEEEEecCCCcEEEEEcccCc--eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceee
Q 013644 64 RIMPFTDDRKIITSSADGQVRLGQIFEDG--RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRL 141 (439)
Q Consensus 64 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 141 (439)
+|+| |+++|++++. +.|.+||+.++. .. ..+..|...+..++|+|+|++ |+.++ ++.|++||+.+++....
T Consensus 115 ~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSP--DAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECT--TSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECC--CCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEe
Confidence 9999 9999999886 899999998762 22 336677888999999999985 44554 56899999998765443
Q ss_pred EEeeccCC--CCC---CCCceeeeEEEeecCCCCcEEEEeecCc---------------------------------eEE
Q 013644 142 FYCSSFSE--NSK---QPMNSIRLNAIVIDPRNPNYFAVGGSDE---------------------------------YAR 183 (439)
Q Consensus 142 ~~~~~~~~--~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------------------------~i~ 183 (439)
........ ... .......+.+++|+|++ +.|++++.|+ .|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 32110000 000 00000114679999998 6777776654 788
Q ss_pred EEeCcC-CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec------CCeEEEEEccCCCCCCCCCCCc
Q 013644 184 VYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 184 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~ 256 (439)
+||+.+ ++.... .....+...+..++| |+|+.|+... +..|++||+.++
T Consensus 267 ~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---------- 322 (741)
T 2ecf_A 267 VISPAEQAQTQWI-------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---------- 322 (741)
T ss_dssp EECSSTTCCCEEE-------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC----------
T ss_pred EEECCCCCceEEe-------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC----------
Confidence 889877 552110 000246778999999 9999888652 457999999876
Q ss_pred ccccccccceeEeCCCCc-c-eeeeEEeeCCCCceEEEeCCCCeEEEEecC-CCceeEeecccccceEEE-eecCCCcEE
Q 013644 257 EDLQKREEPQVYSGHRNS-Q-TVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQL-EPHPHIPMF 332 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~-~-~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~-~~s~~~~~l 332 (439)
+....+..+... . .+..+. |+|||+++++++.+|.++||.+. +++ ...+..|...|..+ .|+|+++.|
T Consensus 323 ------~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 323 ------QQRVLAHETSPTWVPLHNSLR-FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLA 394 (741)
T ss_dssp ------CEEEEEEEECSSCCCCCSCCE-ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred ------ceEEEEEcCCCCcCCcCCceE-ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence 333333333211 0 245667 89999999999999977777664 345 77788888888887 599999876
Q ss_pred EE-EecCC--eEEEeccC
Q 013644 333 AT-CGIEK--TVKLWAPM 347 (439)
Q Consensus 333 ~s-~~~dg--~i~iw~~~ 347 (439)
+. ++.++ .++||++.
T Consensus 395 ~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 395 YFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEECSSCTTCBEEEEEE
T ss_pred EEEEeCCCCceEEEEEEE
Confidence 54 44455 89999985
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=3.2e-26 Score=201.05 Aligned_cols=283 Identities=8% Similarity=0.105 Sum_probs=188.9
Q ss_pred EEEEecCCCeEEEEeCCC-CcceeeeecCCcccEEEEEEeecCCCcEEEEecCC-CcEEEEEcc--cCceeeeEEecCCC
Q 013644 28 FLVSGSDDKLVIFWDWKD-RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD-GQVRLGQIF--EDGRMDTKRLGKHQ 103 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~--~~~~~~~~~~~~~~ 103 (439)
++++++.|+.|++|++.. +.........|...+.+++|+| ++++|++++.+ +.|.+|++. ++.......+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 445557899999999863 3221111235677889999999 99988888876 999999997 44443333444333
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-cCceE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYA 182 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i 182 (439)
.+..++|+|+++++++++..++.|.+||+..+.......... ....+.+++|+|++ +.+++++ .++.|
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~s~dg-~~l~~~~~~~~~v 153 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---------GLDGCHSANISPDN-RTLWVPALKQDRI 153 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---------CCTTBCCCEECTTS-SEEEEEEGGGTEE
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc---------CCCCceEEEECCCC-CEEEEecCCCCEE
Confidence 789999999999776677779999999995332222222111 12237789999988 5555555 89999
Q ss_pred EEEeCcC-CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe--cCCeEEEEEccCCCCCCCCCCCcccc
Q 013644 183 RVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDL 259 (439)
Q Consensus 183 ~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~ 259 (439)
++||+.+ ++... .............+..++|+|++++++++ .++.+.+|++......
T Consensus 154 ~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~---------- 213 (343)
T 1ri6_A 154 CLFTVSDDGHLVA----------QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN---------- 213 (343)
T ss_dssp EEEEECTTSCEEE----------EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC----------
T ss_pred EEEEecCCCceee----------ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------
Confidence 9999986 43110 00001111224567889999999866544 3899999999642110
Q ss_pred cccccceeEe----CCCCcceeeeEEeeCCCCceEE-EeCCCCeEEEEecC--C--CceeEeecccccceEEEeecCCCc
Q 013644 260 QKREEPQVYS----GHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKK--G--GKLVRLMVGDRHVVNQLEPHPHIP 330 (439)
Q Consensus 260 ~~~~~~~~~~----~~~~~~~v~~~~~~s~~~~~l~-~~~~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~~~~s~~~~ 330 (439)
........ ++.....+..++ |+|+|++|+ ++..++.|.+|++. + .+.+..+..+.. +..++|+|+++
T Consensus 214 --~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~ 289 (343)
T 1ri6_A 214 --IECVQTLDMMPENFSDTRWAADIH-ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK 289 (343)
T ss_dssp --CEEEEEEECSCTTCCSCCCEEEEE-ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS
T ss_pred --EEEEeeccccCccccccCCccceE-ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC
Confidence 01111111 112122366788 899998776 55578999999998 3 344555554444 88999999999
Q ss_pred EEEEEe-cCCeEEEeccC
Q 013644 331 MFATCG-IEKTVKLWAPM 347 (439)
Q Consensus 331 ~l~s~~-~dg~i~iw~~~ 347 (439)
+|++++ .++.|.+|+++
T Consensus 290 ~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 290 YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEECTTTCEEEEEEEE
T ss_pred EEEEecCCCCeEEEEEEc
Confidence 888877 68999999664
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=7.8e-27 Score=225.66 Aligned_cols=299 Identities=11% Similarity=0.060 Sum_probs=198.8
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcc---cEEEEEEeecCCCcEEEEecCC---------Cc
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD---NIFQTRIMPFTDDRKIITSSAD---------GQ 82 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~d---------g~ 82 (439)
..+.+++|+|||+++++ +.||+|++||+.+++.... +..|.. .|.+++|+| |+++|++++.+ +.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~-~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL-IEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE-ECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE-eccccccccccceEEECC--CCCEEEEEecCccceeecceee
Confidence 34788999999998776 7899999999998876543 455554 489999999 99999998764 78
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc------
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN------ 156 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------ 156 (439)
+.+||+.+++.........|...+..++|+|+|+.++ .++. +.|++||+.+++............ ....+
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la-~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--~~~g~~~~v~~ 168 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI-FIFE-NNIYYCAHVGKQAIRVVSTGKEGV--IYNGLSDWLYE 168 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE-EEET-TEEEEESSSSSCCEEEECCCBTTT--EEEEECCHHHH
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEE-EEEC-CeEEEEECCCCceEEEecCCCCCc--eECcccceeEE
Confidence 8899998876532222334555688999999998644 4443 789999999887655443211000 00000
Q ss_pred ---eeeeEEEeecCCCCcEEEEeecCc----------------------------------eEEEEeCcCCcccCCCCCC
Q 013644 157 ---SIRLNAIVIDPRNPNYFAVGGSDE----------------------------------YARVYDIRKCHWYSPISSD 199 (439)
Q Consensus 157 ---~~~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~ 199 (439)
...+.+++|+|++ +.|++++.++ .|++||+.+++....+.
T Consensus 169 ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-- 245 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-- 245 (723)
T ss_dssp HTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC--
T ss_pred EEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee--
Confidence 0123789999998 6777776442 78899988765211110
Q ss_pred CCcccccccccccCCCccEEEEEEccCCCEEEEec-----CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC-CC
Q 013644 200 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RN 273 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 273 (439)
.......+...+..++|+|+|++++... +..|++||+.++ +....+..+ ..
T Consensus 246 -------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g----------------~~~~~~~~~~~~ 302 (723)
T 1xfd_A 246 -------PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG----------------VCTKKHEDESEA 302 (723)
T ss_dssp -------CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC----------------CEEEEEEEECSS
T ss_pred -------CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC----------------cceEEEEeccCC
Confidence 0001122467789999999999887653 257999998876 233333222 11
Q ss_pred cce--eeeEEeeCCCCceEEE--eCCCC------eEEEEe-cCCCc--eeEeecccccceEE-EeecCCCcEEEEEecC-
Q 013644 274 SQT--VKGVNFFGPNDEYVMS--GSDCG------HLFIWK-KKGGK--LVRLMVGDRHVVNQ-LEPHPHIPMFATCGIE- 338 (439)
Q Consensus 274 ~~~--v~~~~~~s~~~~~l~~--~~~dg------~i~iwd-~~~~~--~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d- 338 (439)
... ...+. |+|||+.|+. +..++ .|++|| ..+++ +...+..+...+.. ++|+|+|+.|+..+.+
T Consensus 303 ~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 303 WLHRQNEEPV-FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (723)
T ss_dssp CCCCCCCCCE-ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred EEeccCCCce-EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence 100 12556 8999998775 44566 577777 44444 14555543444444 6999999998766655
Q ss_pred --CeEEEeccCC
Q 013644 339 --KTVKLWAPMP 348 (439)
Q Consensus 339 --g~i~iw~~~~ 348 (439)
+.+++|++..
T Consensus 382 ~~~~~~l~~~~~ 393 (723)
T 1xfd_A 382 LPRRRQLYSANT 393 (723)
T ss_dssp CTTCCEEEEECS
T ss_pred CCcceEEEEEeC
Confidence 7899999864
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=2.5e-25 Score=194.35 Aligned_cols=286 Identities=10% Similarity=0.071 Sum_probs=195.8
Q ss_pred EEECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-CCcEEEEEcccCceeeeE
Q 013644 20 VEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-DGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 20 ~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~ 97 (439)
..|.+++. .+++++.++.|++||..+++..... ..+...+ .++|+| +++++++++. ++.|.+||+.+++.. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~-~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPK-VV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCE-EE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCcee-EE
Confidence 34556554 5778888999999999988766554 3445566 999999 9987766555 899999999887651 23
Q ss_pred EecCCCCceEEEEEccCCCcEEEEeCCC-C--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 98 RLGKHQGRVYKLAVEPGSPYIIYSCGED-G--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 98 ~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
.+..+..+..+++|+|++++++ ++..+ + .|.+||+.+++....+.. .....+++|+|++..+++
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~------------~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI------------PYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC------------CTTEEEEEECTTSSCEEE
T ss_pred ecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC------------CCCccceEECCCCCEEEE
Confidence 4555556655599999998544 55555 3 899999999887666542 223589999999855666
Q ss_pred EeecCce-EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCC
Q 013644 175 VGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 175 ~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~ 251 (439)
+...++. +.+|++.....+ .... ... .........++|+|+|++++.+ . ++.|.+||+.++..
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~---------~~~~-~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--- 210 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVL---------FDTG-QEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--- 210 (331)
T ss_dssp EEETTTTEEEEEEECTTCCE---------EEEE-EEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS---
T ss_pred EecCCCceEEEEEECCCCcE---------eecC-Ccc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc---
Confidence 6666678 999998753211 0000 111 1234457899999999865544 3 88999999987621
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-CCCeEEEEecCCCce--eEeeccc----cc---ceE
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKL--VRLMVGD----RH---VVN 321 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~ 321 (439)
......+.... .+..++ |+|+|+++++++ .++.|.+||+.+++. +..+..+ .. ...
T Consensus 211 ----------~~~~~~~~~~~---~~~~~~-~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 211 ----------ITLLNAVGTNN---LPGTIV-VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp ----------CEEEEEEECSS---CCCCEE-ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred ----------cceeeeccCCC---CCceEE-ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 01144444332 367788 899999776554 578899999998877 3333322 22 235
Q ss_pred EEeecCCCcEEEEEe-cCCeEEEeccCCCCC
Q 013644 322 QLEPHPHIPMFATCG-IEKTVKLWAPMPTDF 351 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~ 351 (439)
.++|+|++++|++++ .++.|.+|++.....
T Consensus 277 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 277 QMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 689999999876555 467999999976543
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=7.1e-26 Score=218.24 Aligned_cols=330 Identities=10% Similarity=0.069 Sum_probs=212.4
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-eeeecCCc-----------------ccEEEEEEeecCCCcEEEEe
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FSYLSGHL-----------------DNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+..+.|. |+.+++++.++ | +||+.+++.+ ..++ .|. ..|.+++|+| + ..++.+
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d-~~~~~~ 98 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAG--R-GLVVLF 98 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEE-EHHHHHTTC-----------CCCEEEEETT--T-TEEEEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEee-chhHhhhhccchhccccccccCceeEEECC--C-CeEEEE
Confidence 35567888 66677777777 8 9999988762 2222 222 4699999999 8 555554
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-----CCceeeEEeeccCC---
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-----DSATRLFYCSSFSE--- 149 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~--- 149 (439)
.++.|++||+.+++.. .+..+...+.+++|+|+|++++ ++ .++.|++||+.+ ++............
T Consensus 99 -~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~SpdG~~la-~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT---YLFDTNEETASLDFSPVGDRVA-YV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp -ETTEEEEEETTTTEEE---EEECCTTCCTTCEECTTSSEEE-EE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred -ECCEEEEEECCCCceE---EccCCcccccCCcCCCCCCEEE-EE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 3599999999876543 3445667789999999998644 43 679999999998 76544332111000
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEee---------------------------------cCceEEEEeCcCCcccCCC
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGG---------------------------------SDEYARVYDIRKCHWYSPI 196 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~ 196 (439)
......+...+.++.|+|++ ++|++++ .+..|++||+.+++....
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~- 250 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL- 250 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-
T ss_pred cchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-
Confidence 00000001125789999998 7777776 456899999987652110
Q ss_pred CCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC-----eEEEEEccCCCCCCCCCCCcccccccccceeEe-
Q 013644 197 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS- 269 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (439)
.....+...+..++|+|+|+.|+++. ++ .|++||+.++. ....+.
T Consensus 251 ------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~----------------~~~~~~~ 302 (706)
T 2z3z_A 251 ------------QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR----------------FVRTLFV 302 (706)
T ss_dssp ------------CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC----------------EEEEEEE
T ss_pred ------------ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc----------------eeeEEEE
Confidence 01124567799999999999888764 54 89999987651 112221
Q ss_pred -CCCCc-ceeeeEEeeCC--CCceEEEeCCCCeEEEEecC-CCceeEeecccccceEE-EeecCCCcEEEEEecC-C---
Q 013644 270 -GHRNS-QTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQ-LEPHPHIPMFATCGIE-K--- 339 (439)
Q Consensus 270 -~~~~~-~~v~~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d-g--- 339 (439)
.+... ..+..+. |+| +|+++++++.++.+++|.+. +++.+..+..|...+.. ++|+|+++.|+.++.+ +
T Consensus 303 ~~~~~~~~~~~~~~-~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~ 381 (706)
T 2z3z_A 303 ETDKHYVEPLHPLT-FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLE 381 (706)
T ss_dssp EECSSCCCCCSCCE-ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred ccCCCeECccCCce-eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence 11111 0134566 899 99999999999999999876 67777888888777876 7999999977655544 4
Q ss_pred -eEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEE-eCCC---cEEEEEEecccc
Q 013644 340 -TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTPD---VIMHVLRLQRRQ 392 (439)
Q Consensus 340 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d---g~v~~w~~~~~~ 392 (439)
.|..|++.+++...+. +...+.... +++++..++. .+.+ +.+.+|++.+++
T Consensus 382 ~~l~~~d~~~~~~~~l~-~~~~~~~~~-~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLT-PESGMHRTQ-LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp BEEEEEETTCCCCEESC-CSSSEEEEE-ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEEcCCCCceecc-CCCceEEEE-ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6777777776654443 222333322 4445554443 3332 569999988776
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=6.2e-25 Score=219.84 Aligned_cols=281 Identities=9% Similarity=0.049 Sum_probs=213.4
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
...+.+|.+.+.++.|+++ .++++++.++.++||.+.........+..|. .+..++|+| ++++|+.+ .++.|.+|
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~Sp--DG~~la~~-~~~~i~~~ 270 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNT--DGRRILFS-KGGSIYIF 270 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEE--SSSCEEEE-ETTEEEEE
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcC--CCCEEEEE-eCCEEEEe
Confidence 3456889999999999998 6777888889999998764222223334554 456779999 99999887 48899999
Q ss_pred EcccCceeeeEEecC-----------CCCceEEEEEc-cCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCC
Q 013644 87 QIFEDGRMDTKRLGK-----------HQGRVYKLAVE-PGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQP 154 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 154 (439)
++.. ..+ ..+.. |...+.+++|+ |+|+.++ +++ ++.|.+|++..++..... .
T Consensus 271 d~~~-~~l--~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la-~~~-~~~i~~~~~~~~~~~~~~-~---------- 334 (1045)
T 1k32_A 271 NPDT-EKI--EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA-FVS-RGQAFIQDVSGTYVLKVP-E---------- 334 (1045)
T ss_dssp CTTT-CCE--EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE-EEE-TTEEEEECTTSSBEEECS-C----------
T ss_pred cCCc-eEe--eeeccCcccccccccccccccceeeecCCCCCEEE-EEE-cCEEEEEcCCCCceEEcc-C----------
Confidence 9843 332 23333 34578999999 9998654 444 789999999877643311 1
Q ss_pred Ccee-eeEEEeecCCCCcEEEEeecCceEE-EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE
Q 013644 155 MNSI-RLNAIVIDPRNPNYFAVGGSDEYAR-VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 232 (439)
Q Consensus 155 ~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 232 (439)
+.. .+..++|+ ++ ..|+.++.++.+. +||+..++. ..+ ..+...+..++|+|+|++|++
T Consensus 335 -~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~---------------~~l-~~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 335 -PLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKA---------------EKF-EENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp -CSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCE---------------EEC-CCCCCSEEEEEECTTSSEEEE
T ss_pred -CCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCc---------------eEe-cCCccceeeeEECCCCCEEEE
Confidence 333 68999999 76 7788888788888 999876541 112 255678999999999999988
Q ss_pred ec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC----------eEEE
Q 013644 233 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----------HLFI 301 (439)
Q Consensus 233 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg----------~i~i 301 (439)
++ ++.|++||+.++ +......+|... +..++ |+|||++|++++.++ .|++
T Consensus 396 ~~~~~~v~~~d~~tg----------------~~~~~~~~~~~~--v~~~~-~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 396 ANDRFEIMTVDLETG----------------KPTVIERSREAM--ITDFT-ISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EETTSEEEEEETTTC----------------CEEEEEECSSSC--CCCEE-ECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ECCCCeEEEEECCCC----------------ceEEeccCCCCC--ccceE-ECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 86 889999999876 344445466554 78888 899999998887644 8999
Q ss_pred EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 302 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
||+.+++ +..+..|...+..++|+|+|++|++++.++...+|+..
T Consensus 457 ~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 457 YDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9999887 66777788889999999999999999988887777653
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=2.2e-24 Score=190.10 Aligned_cols=278 Identities=10% Similarity=0.025 Sum_probs=202.3
Q ss_pred cccceEEEEECCCCCEEEEecC-------CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEE
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSD-------DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVR 84 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~ 84 (439)
....+..++|+|+|+++++++. ++.|.+||..+++.+..+. ....+..++|+| ++++++ +...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~--dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN--TTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET--TTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC--CCCEEEEEecCCCEEE
Confidence 3456889999999998887763 5689999999887665542 234577899999 988554 556689999
Q ss_pred EEEcccCceeeeEEecCCC-------CceEEEEEccCCCcEEEEe-CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 85 LGQIFEDGRMDTKRLGKHQ-------GRVYKLAVEPGSPYIIYSC-GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
+||+.+++........... ..+.+++|+|++++++++. +.++.|.+||+.+++....+.. +
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~ 183 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-----------T 183 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----------C
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----------C
Confidence 9999888765443332111 1278899999998766555 4688999999998887665542 1
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 234 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 234 (439)
...+.+++|+|++ +.+++++.++.|.+||+.+++....... ...++...+..++|+|++++++++.
T Consensus 184 ~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 184 GKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKL-----------LDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp CTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEEC-----------CCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEc-----------CCCCCCcccceEEECCCCCEEEEEeCC
Confidence 2236678999987 6788888899999999988764321111 0112455688899999998766664
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEE-eCCCCeEEEEecCCCceeEee
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~ 313 (439)
++.|.+||..++ +....+.... ...+. |+|+++++++ ...++.|.+||..+++.+..+
T Consensus 252 ~~~v~~~d~~~~----------------~~~~~~~~~~----~~~~~-~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 252 AAEVLVVDTRNG----------------NILAKVAAPE----SLAVL-FNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp SSEEEEEETTTC----------------CEEEEEECSS----CCCEE-EETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCC----------------cEEEEEEcCC----CceEE-ECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 689999999876 3344444332 24566 7999996554 457899999999999988887
Q ss_pred cccccceEEEeecCCCcEEEEEecCC
Q 013644 314 VGDRHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 314 ~~h~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
... ..+.+++|+|++++|+.+..++
T Consensus 311 ~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 311 DTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred ecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 654 4678999999999777766553
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2.9e-25 Score=190.59 Aligned_cols=256 Identities=12% Similarity=0.060 Sum_probs=183.1
Q ss_pred EecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc-CceeeeEEecCC-CCceEE
Q 013644 31 SGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE-DGRMDTKRLGKH-QGRVYK 108 (439)
Q Consensus 31 t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~-~~~v~~ 108 (439)
+++.|+.|++||+.+++... +..|...+.+++|+| ++++|++++ ++.|.+||+.+ ++... ....+ ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--~~~~~~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--VWQTPELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEK--VDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--EEEESSCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEE--CCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCceee--eccCCcceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceE--eccccccccccc
Confidence 45678999999998876542 346888999999999 999999986 78999999987 65542 23344 477899
Q ss_pred EEEccCCCcEEEEeC--CCCcEEEEEc--cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 109 LAVEPGSPYIIYSCG--EDGFVQHFDL--RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 109 i~~~~~~~~~l~s~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
++|+|+++. |++++ .++...+|.+ .+++. ..+. ....+..++|+|++..+++++..++.+++
T Consensus 90 ~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~-~~~~------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 90 HGISPDGAL-YAISDKVEFGKSAIYLLPSTGGTP-RLMT------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CEECTTSSE-EEEEECTTTSSCEEEEEETTCCCC-EECC------------SSSSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred eEECCCCCE-EEEEEeCCCCcceEEEEECCCCce-EEee------------cCCCccceEECCCCCEEEEEECCCCceEE
Confidence 999999985 44555 3345555554 44432 2221 12237889999998545558888999999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKR 262 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (439)
|++.... .....+..+...+.++.|+|++++++.+ . ++.+.+|++....
T Consensus 156 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--------------- 206 (297)
T 2ojh_A 156 YSMDIDS--------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--------------- 206 (297)
T ss_dssp EEEETTT--------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---------------
T ss_pred EEEECCC--------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---------------
Confidence 9865321 0011224456788999999999977655 3 8889999876321
Q ss_pred ccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC-----------CeEEEEecCCCcee--EeecccccceEEEeecCCC
Q 013644 263 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----------GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 263 ~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~ 329 (439)
.....+..+.. .+..+. |+|+|++|++++.+ +.|++||+.+++.. ..+.+|...+..++|+|++
T Consensus 207 ~~~~~~~~~~~--~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 283 (297)
T 2ojh_A 207 SSVERITDSAY--GDWFPH-PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 283 (297)
T ss_dssp SCEEECCCCSE--EEEEEE-ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS
T ss_pred CCcEEEecCCc--ccCCeE-ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC
Confidence 23344444443 477788 89999999888765 56999999988664 4444788889999999999
Q ss_pred cEEEEEecCC
Q 013644 330 PMFATCGIEK 339 (439)
Q Consensus 330 ~~l~s~~~dg 339 (439)
++|++++.+.
T Consensus 284 ~~l~~~~~~~ 293 (297)
T 2ojh_A 284 DEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEECC
T ss_pred CEEEEEEecc
Confidence 9988887654
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=4.2e-24 Score=187.75 Aligned_cols=289 Identities=9% Similarity=0.089 Sum_probs=187.6
Q ss_pred CCCeEEEEeCCC--CcceeeeecCCcccEEEEEEeecCCCcEEEEecC---CCcEEEEEcccCceeeeEEecCCCCceEE
Q 013644 34 DDKLVIFWDWKD--RREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA---DGQVRLGQIFEDGRMDTKRLGKHQGRVYK 108 (439)
Q Consensus 34 ~dg~i~iw~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~v~~ 108 (439)
.++.|.+|.++. ++........+......++|+| +++ |++++. ++.|.+|++.++.......+..+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 456788887754 3322212234556778899999 998 555543 68999999976654444444556778899
Q ss_pred EEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCC-CCCceeeeEEEeecCCCCcEEEEeecCceEEEEeC
Q 013644 109 LAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSK-QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 187 (439)
Q Consensus 109 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 187 (439)
++|+|++++++++...++.|.+|++........+.......... .......+.+++|+|++. ++++...++.|++|++
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEE
Confidence 99999999766555588999999996433332222221111000 001233578899999984 7777777899999999
Q ss_pred c-CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCccccccccc
Q 013644 188 R-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREE 264 (439)
Q Consensus 188 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
. .++.. . ...........+..++|+|+|++++++ . ++.+.+|++..... ....
T Consensus 170 ~~~g~~~----------~--~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g------------~~~~ 225 (347)
T 3hfq_A 170 SDAGQLS----------E--QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG------------AFTQ 225 (347)
T ss_dssp CTTSCEE----------E--EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT------------EEEE
T ss_pred CCCCcEE----------E--eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC------------ceEE
Confidence 8 33211 0 000111123356789999999966654 3 88999999874210 0011
Q ss_pred ceeEeCCCC----cceeeeEEeeCCCCceE-EEeCCCCeEEEEecCC---CceeEeecccccceEEEeecCCCcEEEEEe
Q 013644 265 PQVYSGHRN----SQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKG---GKLVRLMVGDRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 265 ~~~~~~~~~----~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 336 (439)
...+..... ...+..++ |+|+|++| ++...++.|.+|++.. .+.+..+..+...+..++|+|+|++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~-~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIR-LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEE-ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEE-ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence 122222211 13477788 89999987 4556689999999873 245556666666789999999999888877
Q ss_pred cC-CeEEEecc--CCCCC
Q 013644 337 IE-KTVKLWAP--MPTDF 351 (439)
Q Consensus 337 ~d-g~i~iw~~--~~~~~ 351 (439)
.+ +.|.+|++ .++++
T Consensus 305 ~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKL 322 (347)
T ss_dssp TTTTEEEEEEECTTTCCE
T ss_pred cCCCcEEEEEEeCCCCeE
Confidence 64 89999955 44443
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=7.3e-25 Score=191.85 Aligned_cols=269 Identities=7% Similarity=-0.006 Sum_probs=191.3
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcc-cEEEEEEeecCCCcEE-EEecCCCcEEEEEcccCceeeeEEecC---
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD-NIFQTRIMPFTDDRKI-ITSSADGQVRLGQIFEDGRMDTKRLGK--- 101 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~--- 101 (439)
++|++++.++.|++||..+++.+..+..++.. .+..++|+| +++++ +++..++.|.+||+.+++.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47899999999999999988766554333322 478899999 98765 556668899999998877654333322
Q ss_pred CCCceEEEEEccCCCcEEEEeC------------CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 102 HQGRVYKLAVEPGSPYIIYSCG------------EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 102 ~~~~v~~i~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
+...+..++|+|++++++ ++. .++.|.+||+.+++....+.. ...+.+++|+|++
T Consensus 80 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------~~~~~~~~~s~dg 146 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLA-IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------PRQITMLAWARDG 146 (337)
T ss_dssp EEECTTCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------------CSSCCCEEECTTS
T ss_pred ccccccceEECCCCCEEE-EEecccccccccccccCceEEEEECCCCcEEEEEeC------------CCCcceeEECCCC
Confidence 122677899999998644 543 579999999998876655542 2236678899987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CC-----------
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DE----------- 236 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~----------- 236 (439)
++++++ ++.|.+||+.+++........ .... .+.|+|+++.++... ++
T Consensus 147 -~~l~~~--~~~i~~~d~~~~~~~~~~~~~-------------~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 207 (337)
T 1pby_B 147 -SKLYGL--GRDLHVMDPEAGTLVEDKPIQ-------------SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp -SCEEEE--SSSEEEEETTTTEEEEEECST-------------TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred -CEEEEe--CCeEEEEECCCCcEeeeeecc-------------ccCC---CceeCCCccEEeeeccCCCceeeeeecccc
Confidence 556665 688999999887643221110 0011 125678877554432 22
Q ss_pred ------------eEEEEEccCCCCCCCCCCCccccccccc-ceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEe
Q 013644 237 ------------LVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 303 (439)
Q Consensus 237 ------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd 303 (439)
.|.+||+.++. . ...+..+.. .+.+++ ++|++++++++ ++.|++||
T Consensus 208 ~~~~~~~~~~~~~v~~~d~~~~~----------------~~~~~~~~~~~--~~~~~~-~s~dg~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 208 DIDPADPTAYRTGLLTMDLETGE----------------MAMREVRIMDV--FYFSTA-VNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCC----------------EEEEEEEECSS--CEEEEE-ECTTSSEEEEE--ESEEEEEE
T ss_pred ccccccccccccceEEEeCCCCC----------------ceEeecCCCCC--ceeeEE-ECCCCCEEEEe--CCeEEEEE
Confidence 46888887651 1 112222322 367788 89999999988 79999999
Q ss_pred cCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+.+++.+..+..+ ..+.+++|+|++++|++++.++.|.+|++.+++.
T Consensus 267 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 267 LEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp TTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 9999888777643 4678999999999999899999999999987754
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=9.4e-25 Score=205.46 Aligned_cols=273 Identities=10% Similarity=0.026 Sum_probs=196.3
Q ss_pred cccceEEEEECCCCCEEEEecC-CCeEEEEeCCCCcceeeeecCCc-ccEEEEEEeecCCCcEEEEecC---CCcEEEEE
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSD-DKLVIFWDWKDRREKFSYLSGHL-DNIFQTRIMPFTDDRKIITSSA---DGQVRLGQ 87 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~ 87 (439)
+..+|++++|+|||++||+++. ||+++||++.++. ..++ ..|. ..+..++|+| + +.+++++. +...++|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-~~~l-t~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-TVKL-NREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-EEEC-CSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-cEee-ecccccccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence 3578999999999999999887 9999999986554 3343 3444 6899999999 8 77777664 55667776
Q ss_pred ccc--CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee
Q 013644 88 IFE--DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI 165 (439)
Q Consensus 88 ~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (439)
+.. ..... .+... ..+...+|+|+++.++++.+.++.+.+||+.+++....... .. .+++|
T Consensus 95 ~~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~------------~~--~~~~~ 157 (582)
T 3o4h_A 95 VNTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL------------PG--FGFVS 157 (582)
T ss_dssp EETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE------------SS--CEEEE
T ss_pred EeccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC------------CC--ceEEE
Confidence 654 32221 23322 23456789999876655655556666999998876554431 11 68899
Q ss_pred cCCCCcEEEEeecC----ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CC--eE
Q 013644 166 DPRNPNYFAVGGSD----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE--LV 238 (439)
Q Consensus 166 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~--~i 238 (439)
+|+| +++++++.+ +.|++||+.+++. ..+..+...+..++|+|||+.|+++. ++ .|
T Consensus 158 spDG-~~la~~~~~~~~~~~i~~~d~~~g~~----------------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i 220 (582)
T 3o4h_A 158 DIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL----------------RVFDSGEGSFSSASISPGMKVTAGLETAREARL 220 (582)
T ss_dssp EEET-TEEEEEEEEETTEEEEEEEETTTCCC----------------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred CCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc----------------eEeecCCCccccceECCCCCEEEEccCCCeeEE
Confidence 9998 788877766 7899999987652 12255677789999999999999765 77 89
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcc------eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ------TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 312 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 312 (439)
++||+.++. .. .+.++.... ...... |+|||.++++++.++.+++|++ ++...
T Consensus 221 ~~~d~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~g~~~l~~~--g~~~~- 279 (582)
T 3o4h_A 221 VTVDPRDGS----------------VE-DLELPSKDFSSYRPTAITWLG-YLPDGRLAVVARREGRSAVFID--GERVE- 279 (582)
T ss_dssp EEECTTTCC----------------EE-ECCCSCSHHHHHCCSEEEEEE-ECTTSCEEEEEEETTEEEEEET--TEEEC-
T ss_pred EEEcCCCCc----------------EE-EccCCCcChhhhhhcccccee-EcCCCcEEEEEEcCCcEEEEEE--CCeec-
Confidence 999998762 22 333333220 112233 7999998999999999999999 66554
Q ss_pred ecccccceEEEeecCCCcEEEEEecCC---eEEEeccCC
Q 013644 313 MVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMP 348 (439)
Q Consensus 313 ~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 348 (439)
.+.+.|.+++|+ +++++++++.+. .+.+|+..+
T Consensus 280 --~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 --APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 234678899999 999999888874 477777765
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3.4e-24 Score=207.72 Aligned_cols=283 Identities=7% Similarity=-0.007 Sum_probs=198.0
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCc--ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR--EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
.|.+++|||||++|++++. +.|++||+.++. .... +..|...+..++|+| ||++|+.++. +.|.+||+.+++.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-l~~~~~~~~~~~~SP--DG~~la~~~~-~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-LTHGEGFATDAKLSP--KGGFVSFIRG-RNLWVIDLASGRQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-CCCSSSCEEEEEECT--TSSEEEEEET-TEEEEEETTTTEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-cccCCcccccccCCC--CCCEEEEEeC-CcEEEEecCCCCE
Confidence 4899999999999999886 999999998872 2333 457888899999999 9999998874 6999999987654
Q ss_pred eeeEEecCCCCc----------------eEEEEEccCCCcEEEEeCCCC-------------------------------
Q 013644 94 MDTKRLGKHQGR----------------VYKLAVEPGSPYIIYSCGEDG------------------------------- 126 (439)
Q Consensus 94 ~~~~~~~~~~~~----------------v~~i~~~~~~~~~l~s~~~dg------------------------------- 126 (439)
... ...+... +..++|+|||++++ +++.|+
T Consensus 185 ~~~--~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 185 MQL--TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEC--CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEe--ccCCccceeccccceeeeeccccccceEECCCCCEEE-EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 322 2222222 47899999999654 554443
Q ss_pred --cEEEEEccC-CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-----CceEEEEeCcCCcccCCCCC
Q 013644 127 --FVQHFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISS 198 (439)
Q Consensus 127 --~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~ 198 (439)
.|++||+.+ ++....... ..+...+..++| |++ +.|++++. +..|++||+.+++...
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~---- 326 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLG---------KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRV---- 326 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCC---------SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEE----
T ss_pred eeEEEEEECCCCCceEEecCC---------CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEE----
Confidence 788889887 765433211 015667899999 988 66665543 5789999998865321
Q ss_pred CCCcccccccccccCCC-c---cEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC
Q 013644 199 DTPVDTFCPRHLIGKNN-I---HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 273 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~~-~---~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (439)
+...+. . .+..++|+|+|+++++++ ++.+.+|.+.... . ...+..+..
T Consensus 327 -----------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---------------~-~~~l~~~~~ 379 (741)
T 2ecf_A 327 -----------LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---------------K-AAALTHGNW 379 (741)
T ss_dssp -----------EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---------------C-EEESCCSSS
T ss_pred -----------EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---------------C-eeeeeecce
Confidence 111111 1 345789999999888776 7777777765220 2 344444543
Q ss_pred cceeeeEEeeCCCCceEE-EeCCCC--eEEEEecCC-CceeEeecccccceEEEeecCCCcEEEEEecC----CeEEEec
Q 013644 274 SQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWA 345 (439)
Q Consensus 274 ~~~v~~~~~~s~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~ 345 (439)
. +..+..|+|+++.|+ +++.++ .+++|++.. +.....+.. ...+..++|+||+++|+....+ +.+.+|+
T Consensus 380 ~--v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 380 S--VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp C--EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred E--EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 3 666633899998775 455555 899999864 555666665 5678899999999987766543 5788998
Q ss_pred cCCCCC
Q 013644 346 PMPTDF 351 (439)
Q Consensus 346 ~~~~~~ 351 (439)
..++..
T Consensus 457 ~~~~~~ 462 (741)
T 2ecf_A 457 ANGEKI 462 (741)
T ss_dssp TTSCEE
T ss_pred cCCCeE
Confidence 866543
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.5e-24 Score=209.05 Aligned_cols=285 Identities=10% Similarity=0.058 Sum_probs=196.1
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc----
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE---- 90 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~---- 90 (439)
..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+| ++++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY--LFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE--EECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE--ccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 5555553 5999999998875432 345667788999999 99999985 679999999987
Q ss_pred -CceeeeEEecCCCCc--------------eEEEEEccCCCcEEEEeC--------------------------------
Q 013644 91 -DGRMDTKRLGKHQGR--------------VYKLAVEPGSPYIIYSCG-------------------------------- 123 (439)
Q Consensus 91 -~~~~~~~~~~~~~~~--------------v~~i~~~~~~~~~l~s~~-------------------------------- 123 (439)
++.... ...+... +.+++|+|+|++++ +++
T Consensus 155 ~g~~~~~--~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la-~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSRAIAV--TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA-FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCEES--CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE-EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCCcEEe--ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE-EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 554321 2222222 48899999999654 544
Q ss_pred -CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc-----eEEEEeCcCCcccCCCC
Q 013644 124 -EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-----YARVYDIRKCHWYSPIS 197 (439)
Q Consensus 124 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~ 197 (439)
.+..|++||+.+++....... ..+...+.+++|+|++ +.|++++.++ .|++||+.+++....
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~-- 299 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTG---------EPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRT-- 299 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCC---------SCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEE--
T ss_pred CCeeEEEEEECCCCceEeeccC---------CCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeE--
Confidence 446799999988765433211 0145568999999988 6777776665 899999988631100
Q ss_pred CCCCcccccccccccCCCccEEEEEEcc--CCCEEEEec-CCeEEEEEcc-CCCCCCCCCCCcccccccccceeEeCCCC
Q 013644 198 SDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN-DELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRN 273 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (439)
... .........+..+.|+| +|+++++++ ++.+.+|.+. .+ .....+..+..
T Consensus 300 -------~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~----------------~~~~~l~~~~~ 355 (706)
T 2z3z_A 300 -------LFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG----------------RLIRQVTKGEW 355 (706)
T ss_dssp -------EEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS----------------CEEEECCCSSS
T ss_pred -------EEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC----------------CEEEecCCCCe
Confidence 000 00000011245689999 999888886 8888888875 22 23344544443
Q ss_pred cceeee-EEeeCCCCceEEEe-CCCC----eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecC----CeEEE
Q 013644 274 SQTVKG-VNFFGPNDEYVMSG-SDCG----HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKL 343 (439)
Q Consensus 274 ~~~v~~-~~~~s~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~i 343 (439)
. +.. +. |+|+++.|+.+ +.++ .|+.|++.+++. ..+. |...+..++|+|+|++|+....+ +.|.+
T Consensus 356 ~--v~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l 430 (706)
T 2z3z_A 356 E--VTNFAG-FDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV 430 (706)
T ss_dssp C--EEEEEE-ECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE
T ss_pred E--EEeeeE-EcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEE
Confidence 3 555 56 89999877654 4444 677778877663 3343 56778999999999988776544 56999
Q ss_pred eccCCCC
Q 013644 344 WAPMPTD 350 (439)
Q Consensus 344 w~~~~~~ 350 (439)
|++.+++
T Consensus 431 ~d~~~~~ 437 (706)
T 2z3z_A 431 TNIGKGS 437 (706)
T ss_dssp EESSSCE
T ss_pred EECCCCe
Confidence 9998765
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.4e-23 Score=184.14 Aligned_cols=283 Identities=10% Similarity=0.072 Sum_probs=181.6
Q ss_pred ccccceEEEEECCCCCEEEEecCC-CeEEEEeCC--CCcce-eeeecCCcccEEEEEEeecCCCcEEEEecC-CCcEEEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDD-KLVIFWDWK--DRREK-FSYLSGHLDNIFQTRIMPFTDDRKIITSSA-DGQVRLG 86 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~d-g~i~iw~~~--~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw 86 (439)
.|...+.+++|+|+|++|++++.+ +.|++|++. ++... ...+..+ ..+..++|+| ++++|++++. ++.|.+|
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDH--QGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECT--TSSEEEEEETTTTEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcC--CCCEEEEEecCCCeEEEE
Confidence 467789999999999988888776 999999997 44322 2222333 3788999999 9998876654 8899999
Q ss_pred EcccCcee-eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-CCceeeEE-eeccCCCCCCCCceeeeEEE
Q 013644 87 QIFEDGRM-DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSATRLFY-CSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~v~~~ 163 (439)
++..+... ....+. ....+.+++|+|+++++++++..++.|++||+.+ ++...... ..... ....+..+
T Consensus 112 d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 183 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------EGAGPRHM 183 (343)
T ss_dssp EEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------TTCCEEEE
T ss_pred ECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC-------CCCCcceE
Confidence 99532221 122233 3346889999999987665555899999999987 54332220 11111 12357789
Q ss_pred eecCCCCcEEEEeecCceEEEEeCcC--CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEE
Q 013644 164 VIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVY 239 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~ 239 (439)
+|+|++..+++++..++.+.+|++.. ++... ................+..++|+|++++|+++ . ++.|.
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~ 256 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLIT 256 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE-------EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEE
Confidence 99999844555666889999999964 22100 00000000001123457789999999877644 3 89999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-CCCeEEEEec--CCCce--eEeec
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKK--KGGKL--VRLMV 314 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~--~~~~~ 314 (439)
+|++..... ..+....+..+.. +..++ |+|+|++|++++ .++.|.+|++ .+++. +..+.
T Consensus 257 v~d~~~~~~------------~~~~~~~~~~~~~---~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 257 VFSVSEDGS------------VLSKEGFQPTETQ---PRGFN-VDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp EEEECTTSC------------CEEEEEEEECSSS---CCCEE-ECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEcCCCC------------ceEEeeeecCCCc---cceEE-ECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 999973200 0122233333322 67788 899999888777 6899999954 45543 33343
Q ss_pred ccccceEEEeecCCC
Q 013644 315 GDRHVVNQLEPHPHI 329 (439)
Q Consensus 315 ~h~~~v~~~~~s~~~ 329 (439)
.. ....+++|.|+.
T Consensus 321 ~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 321 VG-QGPMWVVVNAHE 334 (343)
T ss_dssp CS-SSCCEEEEEEEC
T ss_pred cC-CCCeeEEEEccc
Confidence 32 345567776654
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.1e-22 Score=177.51 Aligned_cols=265 Identities=11% Similarity=0.073 Sum_probs=179.3
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEec-CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC-
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGS-DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG- 81 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg- 81 (439)
.++...+..+...+ +++|+|+|+++++++ .++.|.+||..+++.....+..+..+..+++|+| ++++|+++..++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP--DDQFAVTVTGLNH 106 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT--TSSEEEECCCSSS
T ss_pred cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC--CCCEEEEecCCCC
Confidence 45556666666677 999999999666555 4889999999988762333455666655599999 999999655553
Q ss_pred --cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc-EEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 82 --QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF-VQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 82 --~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.|.+||+.+++.... +. ......+++|+|++++++++...++. |.+|++............... ...
T Consensus 107 ~~~i~v~d~~~~~~~~~--~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-------~~~ 176 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFIST--IP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS-------GGT 176 (331)
T ss_dssp SCEEEEEETTTTEEEEE--EE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC-------SSS
T ss_pred cccEEEEECCCCCeEEE--EE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc-------CCC
Confidence 899999987766533 33 23456899999999887777777788 999999865443222111111 223
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CC
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DE 236 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~ 236 (439)
....++|+|++..+++++..++.|.+||+.+++... ....+ . ....+..++|+|+|++++++. ++
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-----------~~~~~-~-~~~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-----------LLNAV-G-TNNLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-----------EEEEE-E-CSSCCCCEEECTTSSEEEEECSSEE
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-----------eeeec-c-CCCCCceEEECCCCCEEEEEEcCCC
Confidence 468899999984466666678999999998766300 00111 1 235567899999999776553 77
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCC----CCc-ceeeeEEeeCCCCceEEEe-CCCCeEEEEecCCCce
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNS-QTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKL 309 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~v~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~ 309 (439)
.|.+||+.++.. .....+..+ ... .....++ |+|+|++|+++ ..++.|.+||+.....
T Consensus 244 ~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 244 DVFNFNQLSGTL--------------SFVKSFGHGLLIDPRPLFGANQMA-LNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTTTEE--------------EEEEEEECCCCCCCGGGTTCCCEE-ECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEEECCCCce--------------eeecccccccccCCCCcccccceE-ECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 899999987610 011222211 111 0124467 89999988654 5567999999986543
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=3.1e-23 Score=182.47 Aligned_cols=286 Identities=9% Similarity=0.011 Sum_probs=184.5
Q ss_pred EEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCceeeeE
Q 013644 19 AVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~ 97 (439)
.++++++++++++++.++.|++||..+++.+..+..+....+..++|+| ++++++ +...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4578889999999999999999999988765554323222577899999 888654 5567899999999877665332
Q ss_pred EecCC----CCceEEEEEccCCCcEEEEeCC------------CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 98 RLGKH----QGRVYKLAVEPGSPYIIYSCGE------------DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 98 ~~~~~----~~~v~~i~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
..... ...+..++|+|+++++ ++++. ++.|.+||+.+++....+.... +...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~ 151 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP---------MPRQVY 151 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE---------CCSSCC
T ss_pred EcccccccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceeeecc---------CCCccc
Confidence 22211 2347889999999854 45554 4899999999865443332211 122477
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccc-c-cccc---cc-cCC---CccEEEEEEccCCCEEE-
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT-F-CPRH---LI-GKN---NIHITGLAYSNTSELLI- 231 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~~---~~-~~~---~~~i~~~~~~~~~~~l~- 231 (439)
+++|+|++ ++ ++++ +.|.+||+.+++....+........ . .+.. .. ... ......+++++++....
T Consensus 152 ~~~~s~dg-~l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 227 (349)
T 1jmx_B 152 LMRAADDG-SL-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 227 (349)
T ss_dssp CEEECTTS-CE-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred ceeECCCC-cE-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc
Confidence 88999998 54 4443 3499999988775433221110000 0 0000 00 000 01334566665542211
Q ss_pred ----------Ee-cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCCCeE
Q 013644 232 ----------SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHL 299 (439)
Q Consensus 232 ----------~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i 299 (439)
.. ..+.+.+|++. .+. ..+..++ ++| ++++++++ ++.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~--~~~~~~~-~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 228 TADLLYGYLSVDLKTGKTHTQEFA-------------------------DLT--ELYFTGL-RSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEEE-------------------------ECS--SCEEEEE-ECSSCTTEEEEE--ESEE
T ss_pred ccccceeEEEEeccCCcEEecccc-------------------------cCC--CcceeeE-ecCCCCCEEEEE--cCeE
Confidence 11 13344444331 111 2367777 899 99999988 8899
Q ss_pred EEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 300 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.+||+.+++.+..+... ..+.+++|+|++++|++++.++.|.+||+.+++.
T Consensus 278 ~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99999999988777643 4577899999999888888899999999987653
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2e-23 Score=179.14 Aligned_cols=241 Identities=13% Similarity=0.080 Sum_probs=168.7
Q ss_pred eeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCC-CcceeeeecCC-cccEEEEEEeecCCCcEEEEec--CCCcE
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD-RREKFSYLSGH-LDNIFQTRIMPFTDDRKIITSS--ADGQV 83 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~--~dg~i 83 (439)
..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.... ...+ ...+.+++|+| ++++|++++ .++..
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DTGFATICNNDHGISP--DGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-CCTTCCCBCSCCEECT--TSSEEEEEECTTTSSC
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-ccccccccccceEECC--CCCEEEEEEeCCCCcc
Confidence 45667899999999999999999987 78999999988 655433 3444 47789999999 999999988 44566
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
.||.+...... ...+..+ ..+..++|+|+++.+++++..++.+++|++.... ....+.. +...+.+
T Consensus 111 ~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~ 177 (297)
T 2ojh_A 111 AIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-----------GEGRNDG 177 (297)
T ss_dssp EEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-----------SSSCEEE
T ss_pred eEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-----------CCCcccc
Confidence 66665432221 1334433 3489999999999777688899999999975422 2221111 3456899
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C------
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D------ 235 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d------ 235 (439)
++|+|++..+++++..++.+++|++.... .....+..+...+..+.|+|++++|+.++ +
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDG--------------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTS--------------SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCC--------------CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 99999884344444468899999876321 01122244567889999999999888775 3
Q ss_pred -----CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC
Q 013644 236 -----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 296 (439)
Q Consensus 236 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d 296 (439)
..|++||+.++. ...+..+.+|... +..+. |+|++++|++++.+
T Consensus 244 ~~~~~~~l~~~d~~~~~--------------~~~~~~~~~~~~~--~~~~~-~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGN--------------VETLFDLFGGQGT--MNSPN-WSPDGDEFAYVRYF 292 (297)
T ss_dssp CSSEEEEEEEEETTSCS--------------CEEEEEEEESTTT--SCSCC-BCTTSSEEEEEEEC
T ss_pred cccCceEEEEEecCCCC--------------ceeeeccCCCCcc--cccce-ECCCCCEEEEEEec
Confidence 569999997751 0112233345443 77777 89999999887765
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=2e-23 Score=201.81 Aligned_cols=289 Identities=5% Similarity=-0.044 Sum_probs=187.3
Q ss_pred ceeeeeecccc---ceEEEEECCCCCEEEEecCC---------CeEEEEeCCCCcce-eeeecCCcccEEEEEEeecCCC
Q 013644 5 NLCGKLHGHKG---CVNAVEFNSTGDFLVSGSDD---------KLVIFWDWKDRREK-FSYLSGHLDNIFQTRIMPFTDD 71 (439)
Q Consensus 5 ~~~~~l~~h~~---~I~~~~~s~~~~~l~t~~~d---------g~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~ 71 (439)
+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++.. ......|...+..++|+| ||
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP--dG 125 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP--KG 125 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS--ST
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC--CC
Confidence 34556666665 49999999999999998764 78899999887642 111234555688999999 99
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCCc------------------eEEEEEccCCCcEEEEeCCCC-------
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGR------------------VYKLAVEPGSPYIIYSCGEDG------- 126 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~------------------v~~i~~~~~~~~~l~s~~~dg------- 126 (439)
+.|+.++. +.|++|++.+++.... ...+... +.+++|+|||++++ +++.++
T Consensus 126 ~~la~~~~-~~i~~~~~~~g~~~~~--~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la-~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 126 QQLIFIFE-NNIYYCAHVGKQAIRV--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA-YAAINDSRVPIME 201 (723)
T ss_dssp TCEEEEET-TEEEEESSSSSCCEEE--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE-EEEEECTTSCEEE
T ss_pred CEEEEEEC-CeEEEEECCCCceEEE--ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE-EEEECCCccceEE
Confidence 99999886 7999999987665432 3333332 37899999999654 444322
Q ss_pred ---------------------------cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-
Q 013644 127 ---------------------------FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS- 178 (439)
Q Consensus 127 ---------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~- 178 (439)
.|++||+.+++....+.... ....+...+..++|+|++ +++++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~SpDg-~~l~~~~~~ 275 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD-----DPRMREYYITMVKWATST-KVAVTWLNR 275 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC-----CGGGSSEEEEEEEESSSS-EEEEEEEET
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc-----cCCCccceeEEEEEeCCC-eEEEEEEcC
Confidence 78889988876533332210 001125678999999998 67766543
Q ss_pred ---CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE----EEEEEccCCCEEEEe--c-CC------eEEEEE
Q 013644 179 ---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI----TGLAYSNTSELLISY--N-DE------LVYLFE 242 (439)
Q Consensus 179 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~--~-d~------~i~i~d 242 (439)
+..|++||+.+++.... ....+...+ ..++|+|+|+.|+.. . ++ .|++||
T Consensus 276 ~~~~~~i~~~d~~~g~~~~~--------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 276 AQNVSILTLCDATTGVCTKK--------------HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp TSCEEEEEEEETTTCCEEEE--------------EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCeEEEEEEeCCCCcceEE--------------EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 36799999988653111 101122222 367999999866643 2 66 566777
Q ss_pred c-cCCCCCCCCCCCcccccccccceeEeCCCCcceeee-EEeeCCCCceEEEeCCC---CeEEEEecCCCc--eeEeecc
Q 013644 243 K-NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDC---GHLFIWKKKGGK--LVRLMVG 315 (439)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~ 315 (439)
. ..+.. .....+...... +.. +. |+|+|+.|+..+.+ +.+++|++.... ....+..
T Consensus 342 ~~~~~~~--------------~~~~~l~~~~~~--~~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 342 SQPNSSN--------------DNIQSITSGDWD--VTKILA-YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp SSCCSSS--------------CCCCBSCCSSSC--EEEEEE-EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred ccCCCCc--------------cceeEeecCCeE--EEeeeE-EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 3 33210 002233322221 343 45 89999998765444 789999976432 3344443
Q ss_pred ---cccceEEEeecCCCcEEEEEe
Q 013644 316 ---DRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 316 ---h~~~v~~~~~s~~~~~l~s~~ 336 (439)
|...+..++|+|+|++|+...
T Consensus 405 ~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 405 DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cccCCCCeEEEEECCCCCEEEEEc
Confidence 567789999999999877653
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=3.7e-22 Score=176.35 Aligned_cols=303 Identities=12% Similarity=0.073 Sum_probs=189.1
Q ss_pred CCCEEEEe----cCCCeEEEEeCC--CCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC----CcEEEEEcccC--c
Q 013644 25 TGDFLVSG----SDDKLVIFWDWK--DRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD----GQVRLGQIFED--G 92 (439)
Q Consensus 25 ~~~~l~t~----~~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~--~ 92 (439)
...+++.| +.++.|.+|.+. +++....... +......++|+| ++++|++++.+ +.|.+|++... .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 34455555 346789999774 3433222222 666778899999 99999998875 79999998763 3
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe-eccCCCC--CCCCceeeeEEEeecCCC
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC-SSFSENS--KQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~ 169 (439)
.........+......+++ ++++++++...++.|.+|++.....+..+.. ....... ....+...+.+++|+|++
T Consensus 89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 3333334445566777887 7776776667889999999976543322211 1111100 011123346889999998
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccc-cccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMG 246 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~ 246 (439)
..++++...++.|.+|++......... ..+... ............+..++|+|+|++++++. ++.|.+|++.++
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNK---EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTC---CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccc---cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 445555656889999998754310000 000000 00011123345578899999999776654 889999998754
Q ss_pred CCCCCCCCCcccccccccceeEeCCCC-cceeeeEEeeCCCCceEEEeCC--CCeEEEEecC--CCc--eeEeecccccc
Q 013644 247 LGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKK--GGK--LVRLMVGDRHV 319 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~s~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~h~~~ 319 (439)
. ......+..... ......++ |+|+|++|+++.. ++.|.+|++. +++ .+..+.. ...
T Consensus 244 ~--------------~~~~~~~~~~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~ 307 (361)
T 3scy_A 244 M--------------LDEIQTVAADTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH 307 (361)
T ss_dssp E--------------EEEEEEEESCSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC
T ss_pred c--------------eEEeEEEecCCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC
Confidence 1 011222222111 12256788 8999998866655 4899999985 444 3444444 456
Q ss_pred eEEEeecCCCcEEEEEe-cCCeEEEecc--CCCCC
Q 013644 320 VNQLEPHPHIPMFATCG-IEKTVKLWAP--MPTDF 351 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~-~dg~i~iw~~--~~~~~ 351 (439)
+..++|+|+|++|++++ .++.|.+|++ .++++
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 78999999999888887 6789999655 45554
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.5e-23 Score=202.49 Aligned_cols=337 Identities=9% Similarity=0.033 Sum_probs=208.6
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcc---cEEEEEEeecCCCcEEEEecC---------CCcEEE
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD---NIFQTRIMPFTDDRKIITSSA---------DGQVRL 85 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~---------dg~i~i 85 (439)
.+++|+|+|++++++ .|+.|++||+.+++.... +..|.. .+.+++|+| ||++|++++. ++.|++
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTI-LSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEE-ECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEE-EccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEE
Confidence 378999999766655 589999999998875433 334433 389999999 9999998876 789999
Q ss_pred EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce--------
Q 013644 86 GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS-------- 157 (439)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------- 157 (439)
||+.+++......+ ...+..++|+|||+.++ .+ .++.|++|++.+++..+........ .....+.
T Consensus 95 ~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la-~~-~~~~i~~~~~~~g~~~~l~~~~~~~--~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 95 YDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLA-YV-YQNNIYLKQRPGDPPFQITFNGREN--KIFNGIPDWVYEEEM 167 (719)
T ss_dssp EETTTTEECCSSCC---CSSBCCEEECSSTTCEE-EE-ETTEEEEESSTTSCCEECCCCCBTT--TEEESSCCHHHHHHT
T ss_pred EECCCCccccceec---CcccccceECCCCCEEE-EE-ECCeEEEEeCCCCCcEEEecCCCcC--CeEcccccceeeeec
Confidence 99987765211112 25688999999999644 44 4789999999888765432111000 0000000
Q ss_pred -eeeEEEeecCCCCcEEEEeecCc----------------------------------eEEEEeCcCCcccCCCCCCCCc
Q 013644 158 -IRLNAIVIDPRNPNYFAVGGSDE----------------------------------YARVYDIRKCHWYSPISSDTPV 202 (439)
Q Consensus 158 -~~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~ 202 (439)
....+++|+|+| +.|++++.|. .|++||+.+++.....
T Consensus 168 ~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~------ 240 (719)
T 1z68_A 168 LATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ------ 240 (719)
T ss_dssp TCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE------
T ss_pred ccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee------
Confidence 112589999998 7787776542 7889998876521000
Q ss_pred ccccccccccCCCccEEEEEEccCCCEEEEec-C----CeEEEEE----ccCCCCCCCCCCCcccccccccceeE----e
Q 013644 203 DTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D----ELVYLFE----KNMGLGPSPLSLSPEDLQKREEPQVY----S 269 (439)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d----~~i~i~d----~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 269 (439)
.......+..+...+..++|+|+++++++.. . ..|.+|| +.++ +....+ .
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g----------------~~~~~~~~~~~ 303 (719)
T 1z68_A 241 -EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW----------------DCPKTQEHIEE 303 (719)
T ss_dssp -ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE----------------ECCGGGEEEEE
T ss_pred -EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC----------------ceEEEEecccc
Confidence 0000112245778899999999998877743 2 2588899 6554 222222 2
Q ss_pred CCCCcceee-----eEEeeCCCCceEEE--eCCCC--eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecC--
Q 013644 270 GHRNSQTVK-----GVNFFGPNDEYVMS--GSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-- 338 (439)
Q Consensus 270 ~~~~~~~v~-----~~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-- 338 (439)
++... +. .+. |+|||+.|+. ...+| .|++|++.+++ ...+..+...+..+.++ +++.|+..+.+
T Consensus 304 ~~~~~--~~~~~~~~~~-~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~ 378 (719)
T 1z68_A 304 SRTGW--AGGFFVSTPV-FSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFE 378 (719)
T ss_dssp CSSSC--SSSSSCCCCE-ECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGG
T ss_pred cCCce--EccccCCccE-ECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCC
Confidence 33332 33 556 8999996654 44444 67788887766 45555566667777777 77776666654
Q ss_pred ---CeEEEeccCC--CC--CCCCC----CchhhhhhhhccccCcc-eEEEeCCC--cEEEEEEecccceee
Q 013644 339 ---KTVKLWAPMP--TD--FPPLP----DNAEKIMKANKQGREDH-SRITLTPD--VIMHVLRLQRRQTLA 395 (439)
Q Consensus 339 ---g~i~iw~~~~--~~--~~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~d--g~v~~w~~~~~~~~~ 395 (439)
+.+++|.+.. +. ...+. ++...+.... +..++. .+++++.+ ..+.+|++.+++...
T Consensus 379 ~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~-~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~ 448 (719)
T 1z68_A 379 EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTAS-FSDYAKYYALVCYGPGIPISTLHDGRTDQEIK 448 (719)
T ss_dssp GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEE-ECGGGSSEEEEECCBSSCEEEEECSSSCCEEE
T ss_pred CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEE-ECCCCCEEEEEcCCCCCCeEEEEECCCCCEEE
Confidence 8889998753 31 11111 1212222222 233333 33344433 357788887766443
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=4.8e-23 Score=180.25 Aligned_cols=275 Identities=10% Similarity=0.030 Sum_probs=189.9
Q ss_pred cEEEEecCCCcEEEEEcccCceeeeEEecCCCC-ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQG-RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 72 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
++|++++.++.|.+||+.+++........ +.. .+..++|+|+++++++++..++.|.+||+.+++....+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcC-CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--
Confidence 57899999999999999887665332222 211 47889999999877788888999999999998877665432100
Q ss_pred CCCCCceeeeEEEeecCCCCcEEEEee------------cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 151 SKQPMNSIRLNAIVIDPRNPNYFAVGG------------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
.+...+..++|+|++ +.++++. .++.|.+||+.+++.... . . ....+
T Consensus 79 ----~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--------------~-~-~~~~~ 137 (337)
T 1pby_B 79 ----ERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--------------F-E-APRQI 137 (337)
T ss_dssp ----EEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--------------E-E-CCSSC
T ss_pred ----cccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEE--------------E-e-CCCCc
Confidence 012246678999987 5666665 568999999987653211 1 1 13346
Q ss_pred EEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC-C
Q 013644 219 TGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G 297 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-g 297 (439)
..++|+|++++|+++ ++.|++||+.++ +....+..+.....+ . ++|++++++..+.. +
T Consensus 138 ~~~~~s~dg~~l~~~-~~~i~~~d~~~~----------------~~~~~~~~~~~~~~~---~-~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 138 TMLAWARDGSKLYGL-GRDLHVMDPEAG----------------TLVEDKPIQSWEAET---Y-AQPDVLAVWNQHESSG 196 (337)
T ss_dssp CCEEECTTSSCEEEE-SSSEEEEETTTT----------------EEEEEECSTTTTTTT---B-CCCBCCCCCCCCTTTT
T ss_pred ceeEECCCCCEEEEe-CCeEEEEECCCC----------------cEeeeeeccccCCCc---e-eCCCccEEeeeccCCC
Confidence 778999999988777 789999999876 333334333211112 3 78898877655433 2
Q ss_pred -----------------------eEEEEecCCCcee-EeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC-
Q 013644 298 -----------------------HLFIWKKKGGKLV-RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP- 352 (439)
Q Consensus 298 -----------------------~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~- 352 (439)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|.+||+.+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~ 274 (337)
T 1pby_B 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK 274 (337)
T ss_dssp EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE
T ss_pred ceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc
Confidence 4689999988764 2334455678899999999998888 799999999876542
Q ss_pred CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 353 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
.+.. ...+.... +..++..+++.+.++.+.+|++.+++...
T Consensus 275 ~~~~-~~~~~~~~-~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 275 RVPL-PHSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEEC-SSCCCEEE-ECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred eecC-CCceeeEE-ECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 2211 11222222 34556666667889999999998887654
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=8e-22 Score=173.69 Aligned_cols=282 Identities=8% Similarity=0.067 Sum_probs=195.4
Q ss_pred CcccEEEEEEeecCCCcEEEEecC-------CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcE
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSA-------DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 128 (439)
....+..++|+| +++++++++. ++.|.+||..+++....... ...+..++|+|++++++++...++.|
T Consensus 39 ~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQ--QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEET--TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hccCccceEECC--CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCCEE
Confidence 345678999999 9988887764 56899999988776543322 34578899999999778788889999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe-ecCceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
.+||..+++....+....... ........+.+++|+|++..+++++ +.++.|.+||+.+++....
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~------------ 179 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKR--TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA------------ 179 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCC--CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE------------
T ss_pred EEEeCCCCeeEEEEecCCCcc--ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE------------
Confidence 999999998777665421110 0000112368899999984444444 3578999999987663221
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC--CcceeeeEEeeC
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFG 284 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~s 284 (439)
...+...+..++|+|++++++++. ++.|.+||..++ +....+.... ....+..++ ++
T Consensus 180 ---~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~s 239 (353)
T 3vgz_A 180 ---IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN----------------KILSRKKLLDDGKEHFFINIS-LD 239 (353)
T ss_dssp ---ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT----------------EEEEEEECCCSSSCCCEEEEE-EE
T ss_pred ---ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC----------------eEEEEEEcCCCCCCcccceEE-EC
Confidence 122334467889999999888776 899999999876 3333433311 122366788 89
Q ss_pred CCCceEEEeCC-CCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEe-cCCeEEEeccCCCCCCCCCCchhhhh
Q 013644 285 PNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPDNAEKIM 362 (439)
Q Consensus 285 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~ 362 (439)
|+++++++++. ++.|.+||..+++.+..+..... ..++|+|++++++.++ .++.|.+||+.+++.....
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~------- 310 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF------- 310 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-------
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE-------
Confidence 99997766654 59999999999998887765432 5699999999655554 7899999999876542110
Q ss_pred hhhccccCcceEEEeCCCcEEEEEEec
Q 013644 363 KANKQGREDHSRITLTPDVIMHVLRLQ 389 (439)
Q Consensus 363 ~~~~~~~~~~~~~~~s~dg~v~~w~~~ 389 (439)
........+++++||...+.-..
T Consensus 311 ----~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 311 ----DTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp ----ECCSEEEEEEECTTSCEEEEEEE
T ss_pred ----ecCCCCCeEEEcCCCCEEEEEEc
Confidence 01123367889999985544433
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=4.6e-22 Score=174.76 Aligned_cols=264 Identities=9% Similarity=0.078 Sum_probs=172.8
Q ss_pred ccccceEEEEECCCCCEEEEecC---CCeEEEEeCCCCcc-eeeeecCCcccEEEEEEeecCCCcEEEEec-CCCcEEEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSD---DKLVIFWDWKDRRE-KFSYLSGHLDNIFQTRIMPFTDDRKIITSS-ADGQVRLG 86 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw 86 (439)
.+...+..++|+|+|+ |++++. ++.|++|++.++.. ....+..+...+..++|+| ++++|++++ .++.|.+|
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp--dg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE--ARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC--CCCEEEEEeCCCCEEEEE
Confidence 4557788899999999 554443 68999999976642 2222234667788999999 999888887 68999999
Q ss_pred EcccC-ceeeeEEecC---------CCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc-CCCceeeEEeeccCCCCCCCC
Q 013644 87 QIFED-GRMDTKRLGK---------HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR-SDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 87 ~~~~~-~~~~~~~~~~---------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 155 (439)
++... .......+.. +...+.+++|+|+++ ++++...++.|++|++. +++... .......
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~~~------- 184 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSE-QSVLTME------- 184 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEE-EEEEECC-------
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEE-eeeEEcC-------
Confidence 99633 2222222211 123488999999999 88888889999999998 444322 2111111
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC--CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
.......++|+|++..+++++..++.+.+|++.. ++... ................+..++|+|+|++|+++
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-------LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-------EEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-------eeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence 1224678999999844566667789999999874 22100 00000000000112458899999999977544
Q ss_pred -c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CCeEEEE--ecCCCc
Q 013644 234 -N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIW--KKKGGK 308 (439)
Q Consensus 234 -~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg~i~iw--d~~~~~ 308 (439)
. ++.|.+|++.... .......+..+.. .+..++ |+|+|++|++++. ++.|.+| |..+++
T Consensus 258 ~~~~~~v~v~~~~~~g-------------~~~~~~~~~~~~~--~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADG-------------HLTLIQQISTEGD--FPRDFD-LDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EETTTEEEEEEECGGG-------------CEEEEEEEECSSS--CCCEEE-ECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred eCCCCEEEEEEECCCC-------------cEEEeEEEecCCC--CcCeEE-ECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 4 8999999986320 1123334444333 267888 8999998887765 5899999 555666
Q ss_pred ee
Q 013644 309 LV 310 (439)
Q Consensus 309 ~~ 310 (439)
+.
T Consensus 322 l~ 323 (347)
T 3hfq_A 322 LS 323 (347)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=3.6e-23 Score=194.64 Aligned_cols=233 Identities=9% Similarity=0.066 Sum_probs=170.6
Q ss_pred CcccEEEEEEeecCCCcEEEEecC-CCcEEEEEcccCceeeeEEecCCC-CceEEEEEccCCCcEEEEeCC---CCcEEE
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSA-DGQVRLGQIFEDGRMDTKRLGKHQ-GRVYKLAVEPGSPYIIYSCGE---DGFVQH 130 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~---dg~i~i 130 (439)
+..+|++++|+| ||+.|++++. ||+++||++.+++. ..+..+. ..+..++|+|+ + ++++++. +...++
T Consensus 20 ~~~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEE
T ss_pred hccchheeecCC--CCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-e-EEEEeccCCCCcceEE
Confidence 355799999999 9999999887 99999999855443 3344555 68999999999 4 6766654 555677
Q ss_pred EEccC--CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc
Q 013644 131 FDLRS--DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208 (439)
Q Consensus 131 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
|.+.. ......+. . ...+...+|+|++...+++.+.++.+.+||+.+++..
T Consensus 93 ~~~~~~~~g~~~~l~--~----------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~--------------- 145 (582)
T 3o4h_A 93 FKVNTSRPGEEQRLE--A----------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR--------------- 145 (582)
T ss_dssp EEEETTSTTCCEECT--T----------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE---------------
T ss_pred EEEeccCCCcccccc--C----------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE---------------
Confidence 66654 22222111 0 1123355777776555555555556669999876521
Q ss_pred ccccCCCccEEEEEEccCCCEEEEec-C----CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee
Q 013644 209 HLIGKNNIHITGLAYSNTSELLISYN-D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 283 (439)
Q Consensus 209 ~~~~~~~~~i~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 283 (439)
.+... .. .+++|+|+|++|+.++ + ..|++||+.++ ....+..+... +..++ |
T Consensus 146 ~l~~~-~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g-----------------~~~~l~~~~~~--~~~~~-~ 202 (582)
T 3o4h_A 146 ELARL-PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-----------------GLRVFDSGEGS--FSSAS-I 202 (582)
T ss_dssp EEEEE-SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC-----------------CCEEECCSSCE--EEEEE-E
T ss_pred EeecC-CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC-----------------CceEeecCCCc--cccce-E
Confidence 11111 11 7889999999999664 5 68999998876 33456666543 78888 8
Q ss_pred CCCCceEEEeCCCC--eEEEEecCCCceeEeecccccceEEEe--------ecCCCcEEEEEecCCeEEEecc
Q 013644 284 GPNDEYVMSGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLE--------PHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 284 s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~--------~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
||||++|+++..++ .|++||+.+++.. .+.+|...+..++ |+|||.++++++.|+.+++|++
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 99999999888888 8999999998887 7777877777777 9999999999999999999999
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=9.5e-22 Score=176.81 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=153.9
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCc----------ceee----eecCCcccEEEEEEeecCCCcEEE----
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR----------EKFS----YLSGHLDNIFQTRIMPFTDDRKII---- 75 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----------~~~~----~~~~h~~~v~~~~~~~~~~~~~l~---- 75 (439)
...++.+++++++.++++++.++ +++|+..... .... ....+...|.+++|+| ++++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC--DNLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT--TSCEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC--CCCEEEEEEe
Confidence 44689999999999999999887 8998753210 0110 1124567899999999 999999
Q ss_pred EecCCCcEEEEEcccC--------cee-eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeec
Q 013644 76 TSSADGQVRLGQIFED--------GRM-DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSS 146 (439)
Q Consensus 76 s~~~dg~i~iw~~~~~--------~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 146 (439)
+++.|++|++||+.+. +.. ....+.+|...|.+++|+|++..+|++++.||+|++||++++........
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-- 190 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-- 190 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC--
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC--
Confidence 8889999999999754 111 13446679999999999998555899999999999999998854332221
Q ss_pred cCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 013644 147 FSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 226 (439)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 226 (439)
|...+.+++|+|++ ++|++|+.||.|++||++ ++....+. .+......|...+.++.|+++
T Consensus 191 ---------~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~--------~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 191 ---------STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIP--------CPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp ---------GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEEC--------CCTTCCTTSCEEEEEEEEEET
T ss_pred ---------CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccccccc--------CCcccCCCCceeEEEEEEecC
Confidence 56679999999986 899999999999999998 33211110 000011234568999999999
Q ss_pred CCEEEEec--CC------eEEEEEccCC
Q 013644 227 SELLISYN--DE------LVYLFEKNMG 246 (439)
Q Consensus 227 ~~~l~~~~--d~------~i~i~d~~~~ 246 (439)
+.++++.. +| .+++|++...
T Consensus 252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 252 YVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceEEEEEccCCCccCCCCceEEEEeccC
Confidence 98887653 43 3899999765
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=3.1e-22 Score=178.76 Aligned_cols=293 Identities=11% Similarity=0.061 Sum_probs=191.0
Q ss_pred eeeeeeccccceEE-----EEECCCCCEEEEecC-CC--eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEe
Q 013644 6 LCGKLHGHKGCVNA-----VEFNSTGDFLVSGSD-DK--LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 6 ~~~~l~~h~~~I~~-----~~~s~~~~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.+..|..|...... .+|+|||++|+.++. ++ .|.+||+.+++.. ....++...+..+.|+| +++.|+.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~sp--dg~~l~~~ 98 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSP--DDDALFYV 98 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECT--TSSEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcC--CCCEEEEE
Confidence 45566777766665 889999999998877 66 4888898887644 33455655555678999 99999999
Q ss_pred cCCCcEEEEEcccCceeeeEEecCCCCceEEE--EEccCCCcEEEE---------------------eCCCCcEEEEEcc
Q 013644 78 SADGQVRLGQIFEDGRMDTKRLGKHQGRVYKL--AVEPGSPYIIYS---------------------CGEDGFVQHFDLR 134 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~l~s---------------------~~~dg~i~iwd~~ 134 (439)
+.++.|.+||+.+++.... ...+...+... .++|++..++.. ...+..|.+||+.
T Consensus 99 ~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp ETTTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred eCCCeEEEEECCCCcceee--eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 9999999999988776544 33344444333 348998743321 2345789999999
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecC-CCCcEEEEeecC------ceEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
+++...... +...+..+.|+| ++ ..|+....+ ..|.++|...++.
T Consensus 177 ~g~~~~l~~------------~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~--------------- 228 (388)
T 3pe7_A 177 TGESTVILQ------------ENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM--------------- 228 (388)
T ss_dssp TCCEEEEEE------------ESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC---------------
T ss_pred CCceEEeec------------CCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce---------------
Confidence 887554443 234578899999 87 666655543 3788888765431
Q ss_pred cccccCCC-ccEEEEEEccCCCEEEEec--CC----eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc-ceeee
Q 013644 208 RHLIGKNN-IHITGLAYSNTSELLISYN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-QTVKG 279 (439)
Q Consensus 208 ~~~~~~~~-~~i~~~~~~~~~~~l~~~~--d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 279 (439)
..+..... ..+..+.|+|+|+.|+..+ ++ .|++||+.++.. ..+..+.++... .....
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------RQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------EEEEEECCEEEEEECTTS
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------EEEEcCCCceeeeecCCC
Confidence 11111111 3577889999998765432 22 399999987620 111122221000 00111
Q ss_pred EEeeCCCCceEEEe---------CCCCeEEEEecCCCceeEeeccccc-----------ceEEEeecCCCcEEEEEe-cC
Q 013644 280 VNFFGPNDEYVMSG---------SDCGHLFIWKKKGGKLVRLMVGDRH-----------VVNQLEPHPHIPMFATCG-IE 338 (439)
Q Consensus 280 ~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~l~s~~-~d 338 (439)
.. |+|+|+.|+.. ..+..|++||+.+++.. .+..|.. .+..++|+|||+.|+.++ .+
T Consensus 295 ~~-~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 295 SL-MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp SE-EEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred Ce-EccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence 24 78999988754 45678999999987653 4444544 578899999999777655 46
Q ss_pred CeEEEeccC
Q 013644 339 KTVKLWAPM 347 (439)
Q Consensus 339 g~i~iw~~~ 347 (439)
|...||.+.
T Consensus 373 g~~~l~~~~ 381 (388)
T 3pe7_A 373 GKPALYLAT 381 (388)
T ss_dssp SSCEEEEEE
T ss_pred CceeEEEEE
Confidence 777777653
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=8.4e-21 Score=167.62 Aligned_cols=276 Identities=10% Similarity=0.071 Sum_probs=176.7
Q ss_pred cccceEEEEECCCCCEEEEecCC----CeEEEEeCCCC-ccee--eeecCCcccEEEEEEeecCCCcEEEEec-CCCcEE
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDD----KLVIFWDWKDR-REKF--SYLSGHLDNIFQTRIMPFTDDRKIITSS-ADGQVR 84 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~d----g~i~iw~~~~~-~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~ 84 (439)
|...+..++|+|+|++|++++.+ +.|.+|++... ..+. .....+......+++ ++++|++++ .++.|.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEE
Confidence 66778889999999999998875 79999998763 2221 112234445666666 566666555 688999
Q ss_pred EEEcccCceeee----EEec--------CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc------eeeE---E
Q 013644 85 LGQIFEDGRMDT----KRLG--------KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA------TRLF---Y 143 (439)
Q Consensus 85 iw~~~~~~~~~~----~~~~--------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~---~ 143 (439)
+|++.....+.. .... .+...+.+++|+|++++++++...++.|.+|++..... +... .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 999975433211 0111 12234588999999997777777789999999886542 2111 1
Q ss_pred eeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEE
Q 013644 144 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 222 (439)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 222 (439)
..... .......++|+|++ +++++++ .++.|.+|++.+++... .........+......++
T Consensus 204 ~~~~~-------~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~----------~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 204 AFKVA-------PGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE----------IQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp EEECC-------TTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE----------EEEEESCSSCCCCEEEEE
T ss_pred ceecC-------CCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE----------eEEEecCCCCCCCcccEE
Confidence 11111 23346789999998 5555554 68999999998654210 000111122334568999
Q ss_pred EccCCCEEEEec-C--CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-CCCe
Q 013644 223 YSNTSELLISYN-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGH 298 (439)
Q Consensus 223 ~~~~~~~l~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-~dg~ 298 (439)
|+|+|++|+++. + +.|.+|++..... .......+.. ...+..++ |+|+|++|++++ .++.
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g------------~~~~~~~~~~---g~~~~~~~-~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNG------------TLTKVGYQLT---GIHPRNFI-ITPNGKYLLVACRDTNV 329 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTC------------CEEEEEEEEC---SSCCCEEE-ECTTSCEEEEEETTTTE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCC------------cEEEeeEecC---CCCCceEE-ECCCCCEEEEEECCCCC
Confidence 999999886664 4 7899999862210 1112223333 12367888 899999888876 6789
Q ss_pred EEEE--ecCCCceeEeec-ccccceEEEeec
Q 013644 299 LFIW--KKKGGKLVRLMV-GDRHVVNQLEPH 326 (439)
Q Consensus 299 i~iw--d~~~~~~~~~~~-~h~~~v~~~~~s 326 (439)
|.+| |..++++..... .+...+.|+.|.
T Consensus 330 v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 330 IQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9996 455676655432 234578888885
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=5.4e-21 Score=168.82 Aligned_cols=289 Identities=8% Similarity=0.013 Sum_probs=179.1
Q ss_pred EEEecC--CCeEEEEeCC--CCcceee-ee-cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc-cCceeeeEEecC
Q 013644 29 LVSGSD--DKLVIFWDWK--DRREKFS-YL-SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF-EDGRMDTKRLGK 101 (439)
Q Consensus 29 l~t~~~--dg~i~iw~~~--~~~~~~~-~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~ 101 (439)
|+.|+. ++.|.+|++. +++.... .. ......+..++|+| ++++|++++.+ .|.+|++. +++.........
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 444543 2568877653 3332111 11 12334678899999 99999988887 99999997 554432222211
Q ss_pred CCCceEEEEEccCCCc-EEEEeC-------------CCCcEEEEEccC-CCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 102 HQGRVYKLAVEPGSPY-IIYSCG-------------EDGFVQHFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 102 ~~~~v~~i~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
+ +.+.+++|+|++++ +++++. .++.+.+|++.. ++....+...... +...+.+++|+
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~s 153 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-------ENTGIHGMVFD 153 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-------TTCCEEEEEEC
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC-------CCCcceEEEEC
Confidence 1 23556899999985 344553 689999999974 5544333321110 23458899999
Q ss_pred CCCCcEEEEee-cCceEEEEeCc-CCcccCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCEEEEec--CCeEEEE
Q 013644 167 PRNPNYFAVGG-SDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYN--DELVYLF 241 (439)
Q Consensus 167 ~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~ 241 (439)
|++ ++++++. .++.|++||+. +++... ..... ..+...+..++|+|+|+++++++ ++.|.+|
T Consensus 154 pdG-~~l~~~~~~~~~v~~~~~~~~g~~~~------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~ 220 (365)
T 1jof_A 154 PTE-TYLYSADLTANKLWTHRKLASGEVEL------------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY 220 (365)
T ss_dssp TTS-SEEEEEETTTTEEEEEEECTTSCEEE------------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCC-CEEEEEcCCCCEEEEEEECCCCCEEE------------eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence 998 5566554 46799999997 554210 00010 12345688999999999887764 6899999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEe----CCCC----cceeeeEEeeCCCCceEEEeCCC-C-----eEEEEecC-C
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYS----GHRN----SQTVKGVNFFGPNDEYVMSGSDC-G-----HLFIWKKK-G 306 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~v~~~~~~s~~~~~l~~~~~d-g-----~i~iwd~~-~ 306 (439)
++........ ........+. ++.. ...+..++||+|+|++|++++.+ + .|.+|++. +
T Consensus 221 ~~~~~~g~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 221 VIDPATHMPV--------YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EECTTTCCEE--------EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred EEeCCCCcEE--------EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 8753110000 0000001111 1110 00367777579999998776543 2 89999986 5
Q ss_pred CceeE---eecccccceEEEeecC---CCcEEEEEecC-CeEEEeccCCC
Q 013644 307 GKLVR---LMVGDRHVVNQLEPHP---HIPMFATCGIE-KTVKLWAPMPT 349 (439)
Q Consensus 307 ~~~~~---~~~~h~~~v~~~~~s~---~~~~l~s~~~d-g~i~iw~~~~~ 349 (439)
++... ....+...+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 293 g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 66543 2333445567899999 89999988864 89999998754
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=3e-21 Score=173.55 Aligned_cols=216 Identities=10% Similarity=0.065 Sum_probs=149.1
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCce-------eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE--
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT-------RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA-- 174 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-- 174 (439)
..++.+++++++. ++++++.++ +++|+....... ..... ... .....+...|.+++|+|++ ++|+
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~v~~l~~spdg-~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVD--KVQ-GLLVPMKFPIHHLALSCDN-LTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEE--CCC-CEEECCSSCEEEEEECTTS-CEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccc--cCc-cccccCCCcccEEEEcCCC-CEEEEE
Confidence 4678899999987 577787777 899886532110 00000 000 0000134569999999987 6777
Q ss_pred --EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-CCEEEEec-CCeEEEEEccCCCCCC
Q 013644 175 --VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYN-DELVYLFEKNMGLGPS 250 (439)
Q Consensus 175 --~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~ 250 (439)
+|+.|+.|++||+.+..... ......+.......+|...|.+++|+|+ +.+|++++ |+.|++||++++
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---- 182 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEA----KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---- 182 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTT----CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----
T ss_pred EeccCCCceEEEEEccccccCC----cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----
Confidence 78899999999997641000 0000011112334678899999999998 78888876 999999999865
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-------ccceEEE
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-------RHVVNQL 323 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~~ 323 (439)
.......+|... +.+++ |+|+|++|++|+.||.|++||.+ ++....+..| ...|.++
T Consensus 183 ------------~~~~~~~~~~~~--v~~v~-wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 183 ------------VKVCATLPSTVA--VTSVC-WSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp ------------EEEEEEECGGGC--EEEEE-ECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred ------------cceeeccCCCCc--eeEEE-EcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 233344455544 99999 89999999999999999999998 6655555433 2389999
Q ss_pred eecCCCcEEEEE-ecCC------eEEEeccCCC
Q 013644 324 EPHPHIPMFATC-GIEK------TVKLWAPMPT 349 (439)
Q Consensus 324 ~~s~~~~~l~s~-~~dg------~i~iw~~~~~ 349 (439)
+|++++.++++. ..|| .+++|++...
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999998877553 3443 3899998754
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=5.9e-22 Score=191.31 Aligned_cols=291 Identities=8% Similarity=0.019 Sum_probs=181.4
Q ss_pred EEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCC---ceEEEEEccCCCcEEEEeCC---------CCcEE
Q 013644 62 QTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQG---RVYKLAVEPGSPYIIYSCGE---------DGFVQ 129 (439)
Q Consensus 62 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~s~~~---------dg~i~ 129 (439)
.++|+| ++.+++++ .|++|++||+.+++... .+..+.. .+.+++|+|||++ |+.++. ++.|+
T Consensus 20 ~~~~s~--dg~~~~~~-~d~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWIS--GQEYLHQS-ADNNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESS--SSEEEEEC-TTSCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEE
T ss_pred ccEECC--CCeEEEEc-CCCCEEEEEcCCCcEEE--EEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEE
Confidence 679999 88655554 69999999998877643 2443433 3899999999995 445544 68999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 209 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (439)
+||+.+++....... ...+..++|+|+| +.|+.+. ++.|++||+.+++.......... ..
T Consensus 94 ~~d~~~g~~~~~~~l------------~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------~~ 153 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL------------PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------NK 153 (719)
T ss_dssp EEETTTTEECCSSCC------------CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBT------TT
T ss_pred EEECCCCccccceec------------CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCc------CC
Confidence 999998865211110 1237789999998 6777764 78999999988764221110000 00
Q ss_pred cccCCC---------ccEEEEEEccCCCEEEEec-CC----------------------------------eEEEEEccC
Q 013644 210 LIGKNN---------IHITGLAYSNTSELLISYN-DE----------------------------------LVYLFEKNM 245 (439)
Q Consensus 210 ~~~~~~---------~~i~~~~~~~~~~~l~~~~-d~----------------------------------~i~i~d~~~ 245 (439)
+..++. ....+++|+|||+.|+.++ +. .|++||+.+
T Consensus 154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 011111 1125899999999998875 32 677888765
Q ss_pred CCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC--C--CeEEEEe----cCCCceeEee----
Q 013644 246 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--C--GHLFIWK----KKGGKLVRLM---- 313 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~--d--g~i~iwd----~~~~~~~~~~---- 313 (439)
+..... ........+.++.. .+..++ |+||++++++... + ..|.+|| ..++++...+
T Consensus 234 ~~~~~~--------~~~~~~~~~~~~~~--~~~~~~-~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 234 PAYVGP--------QEVPVPAMIASSDY--YFSWLT-WVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp HHHHCC--------EECCCCHHHHTSCE--EEEEEE-ESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred CCccce--------eEccCCccCCCCcc--eEEEeE-EeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 410000 00000011223433 378888 8999988777432 2 3588899 8888776666
Q ss_pred cccccceE-----EEeecCCCcEEEE--EecCC--eEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCC----C
Q 013644 314 VGDRHVVN-----QLEPHPHIPMFAT--CGIEK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP----D 380 (439)
Q Consensus 314 ~~h~~~v~-----~~~~s~~~~~l~s--~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----d 380 (439)
.+|...+. .+.|+|||+.|+. ...+| .|.+|++.+++...+..+...+.....+ .....+++.+. +
T Consensus 303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 46766666 8899999996554 44555 5777788776654444333333333333 33334444444 4
Q ss_pred cEEEEEEecc
Q 013644 381 VIMHVLRLQR 390 (439)
Q Consensus 381 g~v~~w~~~~ 390 (439)
+...+|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7788888764
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=1e-20 Score=182.57 Aligned_cols=293 Identities=7% Similarity=0.013 Sum_probs=191.2
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCccc-----EEEEEEeecCCCcEEEEecCC--------
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDN-----IFQTRIMPFTDDRKIITSSAD-------- 80 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~~~d-------- 80 (439)
.....+++|+|||++++++ |+.|++||+.+++... ++.+|... ...+.|+| |+++|+.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE-EECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEE-EEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEcc
Confidence 3456789999999999987 8999999999987643 34555432 24478899 99999998876
Q ss_pred -CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCce--
Q 013644 81 -GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS-- 157 (439)
Q Consensus 81 -g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 157 (439)
+.+.+||+.+++.. .+..|...+...+|+|||+.++ .+ .++.|++|++.+++..+........ .....+.
T Consensus 91 ~~~~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~la-~~-~~~~i~~~~~~~~~~~~lt~~g~~~--~~~~g~~~~ 163 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHKLA-YV-WNNDIYVKIEPNLPSYRITWTGKED--IIYNGITDW 163 (740)
T ss_dssp EEEEEEEETTTTEEC---CSSCCCTTEEEEEECSSTTCEE-EE-ETTEEEEESSTTSCCEECCSCCBTT--TEEESBCCH
T ss_pred ceEEEEEECCCCcEE---EcccCCCcceeeEECCCCCEEE-EE-ECCeEEEEECCCCceEEEcCCCCcc--ceecCcccc
Confidence 56679999887643 3566778899999999999654 44 4789999999887754432111000 0000000
Q ss_pred -------eeeEEEeecCCCCcEEEEeecC-ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 158 -------IRLNAIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 158 -------~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
.....+.|+|+| +.|+.++.| +.+.+|++...... ..+...+..+.+.+.|..
T Consensus 164 v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~------------------~~~~~~~~~~~yp~~G~~ 224 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDE------------------SLQYPKTVRVPYPKAGAV 224 (740)
T ss_dssp HHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCST------------------TCSSCEEEEEECCBTTSC
T ss_pred cccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCC------------------CCCCCcceeecCCCCcCc
Confidence 112358899998 666666544 45888887542200 023445667777776642
Q ss_pred EEEecCCeEEEEEccC---CCCCCCCCCCcccccccccceeEe------CCCCcceeeeEEeeCCCCceEEEeC----CC
Q 013644 230 LISYNDELVYLFEKNM---GLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFFGPNDEYVMSGS----DC 296 (439)
Q Consensus 230 l~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~s~~~~~l~~~~----~d 296 (439)
.....|++||+.+ +... ....+. ++. ..+..+. |+|||+.++... .+
T Consensus 225 ---~~~~~l~v~d~~~~~~~~~~--------------~~~~l~~~~~~~~~~--~~~~~~~-wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 225 ---NPTVKFFVVNTDSLSSVTNA--------------TSIQITAPASMLIGD--HYLCDVT-WATQERISLQWLRRIQNY 284 (740)
T ss_dssp ---CCEEEEEEEETTSCCSSSCC--------------CEEEECCCHHHHTSC--EEEEEEE-EEETTEEEEEEEESSTTE
T ss_pred ---CCeeEEEEEECCCCCCCCcc--------------eEEEecCCccCCCCC--eEEEEEE-EeCCCeEEEEEeCCCCCE
Confidence 1134789999987 4100 111222 133 3478888 899999766542 34
Q ss_pred CeEEEEecCCCc----ee--Eee--cccccceE-----EEeecCCCcEEE-EEec-C--CeEEEeccCCCCCCCCCCc
Q 013644 297 GHLFIWKKKGGK----LV--RLM--VGDRHVVN-----QLEPHPHIPMFA-TCGI-E--KTVKLWAPMPTDFPPLPDN 357 (439)
Q Consensus 297 g~i~iwd~~~~~----~~--~~~--~~h~~~v~-----~~~~s~~~~~l~-s~~~-d--g~i~iw~~~~~~~~~~~~~ 357 (439)
..|++||+.+++ +. ..+ .+|...|. .+.|+|||+.|+ ..+. + ..|.+|++.+++...+...
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG 362 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS
T ss_pred EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC
Confidence 579999999887 22 222 34555444 788999999876 6653 3 4688888887776554433
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=6.5e-20 Score=161.16 Aligned_cols=272 Identities=9% Similarity=-0.022 Sum_probs=171.0
Q ss_pred cceeeeeeccc-cceEEEEECCCCCEE-EEecCCCeEEEEeCCCCcceeeeecCC-----cccEEEEEEeecCCCcEEEE
Q 013644 4 INLCGKLHGHK-GCVNAVEFNSTGDFL-VSGSDDKLVIFWDWKDRREKFSYLSGH-----LDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 4 ~~~~~~l~~h~-~~I~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s 76 (439)
.++++.+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++....+...+ ...+..++|+| ++++|++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~ 108 (349)
T 1jmx_B 31 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYA 108 (349)
T ss_dssp TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEE
T ss_pred CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEE
Confidence 34555665443 257899999999865 456678999999999887655443233 23377899999 9999998
Q ss_pred ecCC------------CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 77 SSAD------------GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 77 ~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
++.+ +.|.+||+.+++.........+...+.+++|+|+++ +++ ++. .|.+||+.+++....+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~-~~~--~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV-AGP--DIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE-ESS--SEEEECTTTCCEEEEECS
T ss_pred EcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE-ccC--cEEEEeCCCCceeccccc
Confidence 8865 899999998754322111222344688999999998 554 433 499999999887665432
Q ss_pred eccCCC-------------CCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 145 SSFSEN-------------SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 145 ~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
...... ............+++++++............+..++..+++.. .+ ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----~~ 250 (349)
T 1jmx_B 185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH----------TQ----EF 250 (349)
T ss_dssp TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE----------EE----EE
T ss_pred cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE----------ec----cc
Confidence 210000 0000001134456666543111111111111222444433210 00 00
Q ss_pred cCCCccEEEEEEcc-CCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 212 GKNNIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 212 ~~~~~~i~~~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
......+..++++| ++++++++ ++.|.+||+.++ +....+.... .+.+++ ++|++++|
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~----------------~~~~~~~~~~---~~~~~~-~s~dg~~l 309 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR----------------KLIKAANLDH---TYYCVA-FDKKGDKL 309 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT----------------EEEEEEECSS---CCCEEE-ECSSSSCE
T ss_pred ccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC----------------eEEEEEcCCC---CccceE-ECCCCCEE
Confidence 11345678999999 99998888 899999999876 3434444332 256778 89999999
Q ss_pred EEeCCCCeEEEEecCCCceeEeeccc
Q 013644 291 MSGSDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
++++.++.|++||+.+++.+..+..+
T Consensus 310 ~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEecCCCeEEEEeccccceeeeeecC
Confidence 88888999999999999888777644
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.86 E-value=7.4e-20 Score=174.99 Aligned_cols=294 Identities=9% Similarity=0.003 Sum_probs=190.7
Q ss_pred eeeeccccceEEEEECCCCCEEEEe--cCCCeEEEEeCCCCcceeeeecCCcccEE---------EEEEe--ecCCCcE-
Q 013644 8 GKLHGHKGCVNAVEFNSTGDFLVSG--SDDKLVIFWDWKDRREKFSYLSGHLDNIF---------QTRIM--PFTDDRK- 73 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~~~- 73 (439)
..+.+|...|..++|++++-++++. +.++...||....+..... +..|...+. ...|+ | |++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~SP--Dg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES-ALPAPWNVRNRVFEYSGFPWAGVPRP--AGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE-SSCTTCCBCCCGGGTCCCCEEEECCS--SSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce-eCCCCccccccccccCCccceeeeec--CCCeE
Confidence 3467899999999999887777777 6688999999644444443 345655555 56666 8 9998
Q ss_pred EEEecC-CCcEEEEEcc--c-CceeeeEEecC-----CCCceEEEEEccCCCcEEEEeCCC----------CcEEEEEcc
Q 013644 74 IITSSA-DGQVRLGQIF--E-DGRMDTKRLGK-----HQGRVYKLAVEPGSPYIIYSCGED----------GFVQHFDLR 134 (439)
Q Consensus 74 l~s~~~-dg~i~iw~~~--~-~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~d----------g~i~iwd~~ 134 (439)
|+.++. +..|.+|++. . +. . ..+.. |...+..++|+|+|+. |+.++.+ ..|++||+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~--~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-P--RPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-C--EECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-C--EeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEECC
Confidence 776554 5566666664 2 32 2 33444 6678899999999985 4455554 579999998
Q ss_pred C------CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC--------ceEEEEeCc-CCcccCCCCCC
Q 013644 135 S------DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--------EYARVYDIR-KCHWYSPISSD 199 (439)
Q Consensus 135 ~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~~~~ 199 (439)
+ ++....... +...+..++|+|+| +.|+.++.+ ..|++||+. +++..
T Consensus 170 ~~~~~~~~~~~~l~~~-----------~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~------ 231 (662)
T 3azo_A 170 GSAAADRSAVRELSDD-----------AHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA------ 231 (662)
T ss_dssp STTTTCGGGSEESSCS-----------CSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE------
T ss_pred CCccccCCceeEEEec-----------CCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc------
Confidence 7 443222101 23457788999998 677766644 479999998 44100
Q ss_pred CCcccccccccccCCCccEEEEEEccCCCEEEEec-CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcc-
Q 013644 200 TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ- 275 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (439)
....+...+...+..+.|+|+|+++++++ ++ .|++|++.++. . ..+..+....
T Consensus 232 ------~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~----------------~-~~l~~~~~~~~ 288 (662)
T 3azo_A 232 ------DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA----------------A-TQLCRREEEFA 288 (662)
T ss_dssp ------EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC----------------E-EESSCCSSBSS
T ss_pred ------ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc----------------e-eeccccccccc
Confidence 11222234467789999999999777775 66 67777764441 1 1111111110
Q ss_pred ------eeeeEEeeCCCCceEEEeCCCCeEEEE--ecCCCceeEeecccccceEEE-eecCCCcEEEEEecCCe--EEEe
Q 013644 276 ------TVKGVNFFGPNDEYVMSGSDCGHLFIW--KKKGGKLVRLMVGDRHVVNQL-EPHPHIPMFATCGIEKT--VKLW 344 (439)
Q Consensus 276 ------~v~~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~~~dg~--i~iw 344 (439)
.+..+. ++|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+.. |.+|
T Consensus 289 ~p~w~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 289 GPLWTPGMRWFA-PLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CCCCSTTCCSEE-ECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CccccccCceEe-EeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 034566 7899999999998 999999 555555 66777777777777 55444334555566654 4555
Q ss_pred ccCCCCCC
Q 013644 345 APMPTDFP 352 (439)
Q Consensus 345 ~~~~~~~~ 352 (439)
++.+++..
T Consensus 366 d~~~g~~~ 373 (662)
T 3azo_A 366 DTVTGRAR 373 (662)
T ss_dssp ETTTCCEE
T ss_pred ECCCCceE
Confidence 66666543
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=3.9e-20 Score=165.58 Aligned_cols=279 Identities=8% Similarity=0.000 Sum_probs=178.4
Q ss_pred eEEEEECCCCCEEEEecCC---CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 17 VNAVEFNSTGDFLVSGSDD---KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
+..++|+|||++|+..... ..|.+|++.+++.. .+...+......+.|+| ++++|+.++.++.|.+|++.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFIST--DERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECC--CCCEEEEEEcCCcEEEEECCCCCc
Confidence 7889999999998876432 47888898877543 22223322233378999 999999999999999999987765
Q ss_pred eeeEEecCCCCceEE-------------------EEEccCCCcEEEEe----CCCCcEEEEEccCCCceeeEEeeccCCC
Q 013644 94 MDTKRLGKHQGRVYK-------------------LAVEPGSPYIIYSC----GEDGFVQHFDLRSDSATRLFYCSSFSEN 150 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~-------------------i~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 150 (439)
..... .+...... +.|+|+++.+++.. ..+..|++||+.+++......
T Consensus 115 ~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------- 185 (396)
T 3c5m_A 115 QVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------- 185 (396)
T ss_dssp EEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-------
T ss_pred EEEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-------
Confidence 43322 22222222 34577776543322 466789999999887654442
Q ss_pred CCCCCceeeeEEEeecC-CCCcEEEEeecC------ceEEEEeCcCCcccCCCCCCCCcccccccccccC-CCccEEEEE
Q 013644 151 SKQPMNSIRLNAIVIDP-RNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLA 222 (439)
Q Consensus 151 ~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 222 (439)
+...+..+.|+| ++ ..|+..+.+ ..|.+||+..++.. .+... ....+..+.
T Consensus 186 -----~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 186 -----DTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR---------------KIKEHAEGESCTHEF 244 (396)
T ss_dssp -----ESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE---------------ESSCCCTTEEEEEEE
T ss_pred -----CCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee---------------EeeccCCCccccceE
Confidence 234578899999 55 555554433 36888887654311 11111 133578899
Q ss_pred EccCCCEEEEec-C-----CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeC-
Q 013644 223 YSNTSELLISYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGS- 294 (439)
Q Consensus 223 ~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~- 294 (439)
|+|+|+.|+..+ + +.|++||+.++. . ..+..... .. +. |+| +|+++++++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~----------------~-~~l~~~~~---~~-~~-~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLE----------------N-EEVMVMPP---CS-HL-MSNFDGSLMVGDGC 302 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCC----------------E-EEEEECCS---EE-EE-EECSSSSEEEEEEC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCC----------------e-EEeeeCCC---CC-CC-ccCCCCceEEEecC
Confidence 999998766553 2 449999987651 1 12221111 22 55 788 999888754
Q ss_pred ---------------CCCeEEEEecCCCceeEeeccccc-----------ceEEEeecCCCcEEEEEec-CCeEEEec--
Q 013644 295 ---------------DCGHLFIWKKKGGKLVRLMVGDRH-----------VVNQLEPHPHIPMFATCGI-EKTVKLWA-- 345 (439)
Q Consensus 295 ---------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~l~s~~~-dg~i~iw~-- 345 (439)
.++.|++||+.+++.. .+..+.. .+..++|+|+|+.|+.++. ++...+|.
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887753 3444433 2567889999998877664 55555554
Q ss_pred cCCCCC
Q 013644 346 PMPTDF 351 (439)
Q Consensus 346 ~~~~~~ 351 (439)
+.++..
T Consensus 382 ~~~~~~ 387 (396)
T 3c5m_A 382 VPESYK 387 (396)
T ss_dssp CCTTCC
T ss_pred Eccccc
Confidence 445444
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=2.2e-19 Score=157.60 Aligned_cols=304 Identities=10% Similarity=0.018 Sum_probs=192.0
Q ss_pred CCCEEEEec------CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec----------CCCcEEEEEc
Q 013644 25 TGDFLVSGS------DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS----------ADGQVRLGQI 88 (439)
Q Consensus 25 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iw~~ 88 (439)
+++++++.. .|+.|.+||..+++.+..+ ..+..+ .++|+| ++++++++. .++.|.+||+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 566665542 4789999999888766553 455444 899999 999999876 3678999999
Q ss_pred ccCceeeeEEecC----CCCceEEEEEccCCCcEEEEeCC-CCcEEEEEccCCCceee-EEeeccCCCCCCCCceeeeEE
Q 013644 89 FEDGRMDTKRLGK----HQGRVYKLAVEPGSPYIIYSCGE-DGFVQHFDLRSDSATRL-FYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 89 ~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~ 162 (439)
.+.+......+.. +......++++|++++++++... ++.|.+||+.+++.+.. +.. . ....
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~------------~-~~~~ 155 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA------------A-GCWS 155 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG------------T-TEEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC------------C-Ccce
Confidence 8776654333321 22456789999999965544433 68999999999876544 321 1 1223
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 240 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i 240 (439)
+.+.|++...+++.+.||.+.+|++.. ++....... ...+.....+ ..+.+++++..++..+ ++.+.+
T Consensus 156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~---------~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS---------KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC---------CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEE
T ss_pred eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc---------cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEE
Confidence 556777667888889999999998764 332100000 0000111111 1223356665555444 889999
Q ss_pred EEccCCCCCCCCCCCcccccccccceeEeCC------CC--cceeeeEEeeCCCCceEEEeCC-----------CCeEEE
Q 013644 241 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGH------RN--SQTVKGVNFFGPNDEYVMSGSD-----------CGHLFI 301 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~v~~~~~~s~~~~~l~~~~~-----------dg~i~i 301 (439)
+|+..... .....+... .. +.....++ ++|+++.++++.. .+.|.+
T Consensus 226 ~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~p~g~~~~a-~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 226 ADFSGDEV--------------KVDGPWSLLNDEDKAKNWVPGGYNLVG-LHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp EECSSSSC--------------EEEEEEESCCHHHHHTTCEECCSSCEE-EETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred EEecCCCc--------------eecccccccCccccccccccCCeeEEE-EecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 99864310 000111100 00 00011245 7899887766532 358999
Q ss_pred EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCc
Q 013644 302 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV 381 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 381 (439)
||+.+++.+..+..+. +.+++|+|+|++|++++. +.|.+||+.++++..+. .+ . ........++++|||
T Consensus 291 iD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~----~i---~-~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLR----TI---E-GAAEASLQVQFHPVG 359 (361)
T ss_dssp EETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEE----EE---T-TSCSSEEEEEECCCS
T ss_pred EECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeE----Ee---c-cCCCCcEEEEecCCC
Confidence 9999999999998876 899999999999998886 99999999887321110 00 0 111233677888887
Q ss_pred E
Q 013644 382 I 382 (439)
Q Consensus 382 ~ 382 (439)
.
T Consensus 360 ~ 360 (361)
T 2oiz_A 360 G 360 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=3.9e-19 Score=156.89 Aligned_cols=257 Identities=10% Similarity=0.034 Sum_probs=162.6
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCC-CCcceeeee-cCCcccEEEEEEeecCCCcE--EEEec-----------
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWK-DRREKFSYL-SGHLDNIFQTRIMPFTDDRK--IITSS----------- 78 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~--l~s~~----------- 78 (439)
...+..++|+|+|++|++++.+ .|.+|++. +++...... ..+ +...+++|+| ++++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT--NTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence 3468899999999999988887 99999987 654332111 111 2245688999 9984 55553
Q ss_pred --CCCcEEEEEccc-CceeeeEEe--cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc-CCCceeeEEeeccCCCCC
Q 013644 79 --ADGQVRLGQIFE-DGRMDTKRL--GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR-SDSATRLFYCSSFSENSK 152 (439)
Q Consensus 79 --~dg~i~iw~~~~-~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~ 152 (439)
.++++.+|++.. ++....... ..+...+.+++|+|+|++++++...++.|++|++. +++...... .....
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-~~~~~--- 190 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-VDAPD--- 190 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-EECSS---
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-EecCC---
Confidence 689999999974 333221111 12456789999999998655555557899999998 665432211 11100
Q ss_pred CCCceeeeEEEeecCCCCcEEEEee-cCceEEEEeCc--CCcccCCCCCCCCccccc-ccccccCCCc------cEEEEE
Q 013644 153 QPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIR--KCHWYSPISSDTPVDTFC-PRHLIGKNNI------HITGLA 222 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~i~~~~ 222 (439)
+...+..++|+|++ +++++++ .++.|.+|++. +++.... ..... ...-..++.. .+..++
T Consensus 191 ---~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 191 ---PGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT------HHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp ---TTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE------EEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred ---CCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc------cceEEcCCCCcCCcccccccccccccEE
Confidence 12347889999998 5665555 57899999865 3331100 00000 0000011122 588999
Q ss_pred -EccCCCEEEEec--CC-----eEEEEEcc-CCCCCCCCCCCcccccccccce---eEeCCCCcceeeeEEeeCC---CC
Q 013644 223 -YSNTSELLISYN--DE-----LVYLFEKN-MGLGPSPLSLSPEDLQKREEPQ---VYSGHRNSQTVKGVNFFGP---ND 287 (439)
Q Consensus 223 -~~~~~~~l~~~~--d~-----~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~s~---~~ 287 (439)
|+|+|++|++++ .+ .|.+|++. ++ +... ....+.. ....++ ++| +|
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g----------------~~~~~~~~~~~~~~--~~~~~a-~sp~~~dg 321 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCG----------------SIEKQLFLSPTPTS--GGHSNA-VSPCPWSD 321 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTS----------------CEEEEEEEEECSSC--CTTCCC-EEECTTCT
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCCC----------------CEEEeeeeeecCCC--Ccccce-ecCCCcCC
Confidence 999999887664 33 89999986 33 1111 1222222 245566 789 89
Q ss_pred ceEEEeCCC-CeEEEEecCCC
Q 013644 288 EYVMSGSDC-GHLFIWKKKGG 307 (439)
Q Consensus 288 ~~l~~~~~d-g~i~iwd~~~~ 307 (439)
++|++++.+ +.|.+|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999988764 89999998765
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=7.4e-20 Score=163.30 Aligned_cols=297 Identities=9% Similarity=0.009 Sum_probs=181.5
Q ss_pred EEeCCCCcceeeeecCCcccEEE-----EEEeecCCCcEEEEecC-CCc--EEEEEcccCceeeeEEecCCCCceEEEEE
Q 013644 40 FWDWKDRREKFSYLSGHLDNIFQ-----TRIMPFTDDRKIITSSA-DGQ--VRLGQIFEDGRMDTKRLGKHQGRVYKLAV 111 (439)
Q Consensus 40 iw~~~~~~~~~~~~~~h~~~v~~-----~~~~~~~~~~~l~s~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~v~~i~~ 111 (439)
.++..++..+.. +..|...... .+|+| |+++|+.++. ++. |.+||+.+++.. .....+...+..++|
T Consensus 14 ~~~~~~g~~~~~-lt~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 14 YQDASTGAQVTR-LTPPDVTCHRNYFYQKCFTR--DGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTEGRGDNTFGGFL 88 (388)
T ss_dssp EECTTTCCEEEE-CSCTTSCEECCCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTTCEEE--ECCCSSCBCSSSCEE
T ss_pred EecCCCCcceEE-ecCCcccccchhhcCccCCC--CCCEEEEEEcCCCCceEEEEeCCCCceE--EeeeCCCCCccceEE
Confidence 346666655544 4566665665 78999 9999998887 664 778888776554 224455555557789
Q ss_pred ccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee--EEEeecCCCCcEEEEe-------------
Q 013644 112 EPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL--NAIVIDPRNPNYFAVG------------- 176 (439)
Q Consensus 112 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~------------- 176 (439)
+|+++. |+.++.++.|++||+.+++........ ...+ ....++|++ .+++..
T Consensus 89 spdg~~-l~~~~~~~~l~~~d~~~g~~~~~~~~~-----------~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 89 SPDDDA-LFYVKDGRNLMRVDLATLEENVVYQVP-----------AEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp CTTSSE-EEEEETTTEEEEEETTTCCEEEEEECC-----------TTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSH
T ss_pred cCCCCE-EEEEeCCCeEEEEECCCCcceeeeech-----------hhcccccceeECCCC-CeeccccccCccccccccc
Confidence 999985 557777889999999998866554321 1122 223458877 555532
Q ss_pred ---------ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec-C------CeEE
Q 013644 177 ---------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-D------ELVY 239 (439)
Q Consensus 177 ---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d------~~i~ 239 (439)
..+..|.+||+.+++.. .+..+...+..+.|+| +|+.|+... + ..|.
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----------------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGEST----------------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEE----------------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred chhhhhhccCCcceEEEEECCCCceE----------------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence 23468999999876521 1123455688999999 998887654 2 2778
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-----CCeEEEEecCCCcee--Ee
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKKGGKLV--RL 312 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~--~~ 312 (439)
+++.... ....+..+.....+.... |+|||+.|+..+. +..|++||+.+++.. ..
T Consensus 220 ~~d~~~~-----------------~~~~l~~~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 220 LINEDGT-----------------NMRKVKTHAEGESCTHEF-WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp EEETTSC-----------------CCEESCCCCTTEEEEEEE-ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred EEeCCCC-----------------ceEEeeeCCCCcccccce-ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence 8887654 223333333222466677 8999998866433 124999999988743 33
Q ss_pred ecccccc---eEEEeecCCCcEEEEE---------ecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCC
Q 013644 313 MVGDRHV---VNQLEPHPHIPMFATC---------GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 380 (439)
Q Consensus 313 ~~~h~~~---v~~~~~s~~~~~l~s~---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 380 (439)
+.++... ...+.|+|||+.|+.. ..+..|.+|++.+++...+..+.................+++++|
T Consensus 282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC
Confidence 3331111 1224799999987754 456789999998876543332221000000000001234567788
Q ss_pred cEEEEEEe
Q 013644 381 VIMHVLRL 388 (439)
Q Consensus 381 g~v~~w~~ 388 (439)
|+..++..
T Consensus 362 g~~l~~~s 369 (388)
T 3pe7_A 362 DKQILFTS 369 (388)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 87666654
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=1.7e-18 Score=150.41 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=174.9
Q ss_pred ccceEEEEECCCCCEEEEecCC------------------------CeEEEEeCCCCcceeeeecCCcccEEEEEEeecC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDD------------------------KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 69 (439)
-+.|.+|+++|+|+++++...+ +.|.+||..+++.......++-.....+++.|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 4679999999999999988777 47999999888765544335556789999999
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEe---------cCCCCceEEEEEcc-CCCcEEEEeC-CCCcEEEEEccCCCc
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRL---------GKHQGRVYKLAVEP-GSPYIIYSCG-EDGFVQHFDLRSDSA 138 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~v~~i~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~ 138 (439)
+++++++...++.|++|+....... ...+ ..+......++++| ++. ++++.+ .++.|++|+ ..++.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~-~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGP-LLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCC-SEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEE-EEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCE
Confidence 9998888888999999998543211 1223 23445789999999 565 777776 689999999 45555
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
...+...... ....+.+-.....++++|+++.++++...++.|++||..+++.+..+.. ..+...+
T Consensus 178 ~~~~~~~g~~-~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-------------~~~~~~~ 243 (329)
T 3fvz_A 178 VTQWGEESSG-SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-------------ASFGRNV 243 (329)
T ss_dssp EEEECEECCS-SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-------------TTTTTCE
T ss_pred EEEeccCCCC-CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-------------cccCCCc
Confidence 4443221100 0000112223567777776446677766777777777765442111000 1112223
Q ss_pred EEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCe
Q 013644 219 TGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 298 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~ 298 (439)
..++++| +.. +..+|+..++...+..
T Consensus 244 ~~~~~~p-g~~-----------------------------------------------------~~~~g~~~v~~~~~~~ 269 (329)
T 3fvz_A 244 FAISYIP-GFL-----------------------------------------------------FAVNGKPYFGDQEPVQ 269 (329)
T ss_dssp EEEEEET-TEE-----------------------------------------------------EEEECCCCTTCSCCCC
T ss_pred ceeeecC-CEE-----------------------------------------------------EEeCCCEEeccCCCcE
Confidence 3333333 111 1113444444455678
Q ss_pred EEEEecCCCceeEeec---ccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 299 LFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 299 i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
|++|+..+++.+..+. ++...+..|+++|+|.++++...++.|++|++...
T Consensus 270 v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 9999999999988873 56677899999999998999999999999998653
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.85 E-value=9.1e-18 Score=154.56 Aligned_cols=288 Identities=11% Similarity=0.079 Sum_probs=199.3
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc--cCceeeeEEecC
Q 013644 24 STGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF--EDGRMDTKRLGK 101 (439)
Q Consensus 24 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~ 101 (439)
|.+.++++...++.|.++|..+++.+..+..+ ..+..+.|+| +++++++++.++.|.+||+. +.+.+ ..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEE--EEEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEe--EEEec
Confidence 44567778888999999999998776665333 3567899999 99999999999999999995 55444 33433
Q ss_pred CCCceEEEEEc----cCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCc-eeeeEEEeecCCCCcEEEEe
Q 013644 102 HQGRVYKLAVE----PGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMN-SIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 102 ~~~~v~~i~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 176 (439)
. .....++|+ |+|++++++...++.|.++|..+.+.+..+......... ...| ...+..+..+++++.+++..
T Consensus 239 G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~-~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE-QEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT-CCEESCCCEEEEEECSSSSEEEEEE
T ss_pred C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc-ccccCCCceEEEEEcCCCCEEEEEe
Confidence 2 346799999 699987777778899999999999888777643211100 0001 12577888888877777777
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCC
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~ 254 (439)
..+|.|.++|....+.. .... -........+.|+|++++++++. ++.|.++|+.++
T Consensus 317 ~~~g~v~~vd~~~~~~~------------~v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-------- 374 (567)
T 1qks_A 317 KETGKILLVDYTDLNNL------------KTTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-------- 374 (567)
T ss_dssp TTTTEEEEEETTCSSEE------------EEEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT--------
T ss_pred cCCCeEEEEecCCCccc------------eeee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC--------
Confidence 78899999998764310 0000 11233466789999999877663 889999999876
Q ss_pred CcccccccccceeEeC-CCCcceeeeEEeeCCCCc-eEEEeC-CCCeEEEEecCC-------CceeEeecccccceEEEe
Q 013644 255 SPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDE-YVMSGS-DCGHLFIWKKKG-------GKLVRLMVGDRHVVNQLE 324 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~ 324 (439)
+....+.. ...+..-....|++|++. ..+++. .++.|.++|..+ .+.++.+......-..+.
T Consensus 375 --------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 375 --------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp --------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred --------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE
Confidence 33333333 221111123344678754 445553 468999999987 667777775543334577
Q ss_pred ecCCCcEEEEEec-------CCeEEEeccCCC
Q 013644 325 PHPHIPMFATCGI-------EKTVKLWAPMPT 349 (439)
Q Consensus 325 ~s~~~~~l~s~~~-------dg~i~iw~~~~~ 349 (439)
.+|++++|..... .++|.++|+.+.
T Consensus 447 ~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 447 THPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred eCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 8999998887653 359999998765
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.5e-18 Score=152.34 Aligned_cols=284 Identities=10% Similarity=0.057 Sum_probs=187.0
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEec----------CCCeEEEEeCCCCcceeeeecC-----CcccEEEEEEee
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGS----------DDKLVIFWDWKDRREKFSYLSG-----HLDNIFQTRIMP 67 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-----h~~~v~~~~~~~ 67 (439)
+.+++.++..+..+ .++|+|||++|++++ .++.|.+||..+.+.+..+... +......++++|
T Consensus 40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence 34566677777666 899999999999875 3678999999887765554221 223456789999
Q ss_pred cCCCcEEEEecC--CCcEEEEEcccCceeeeEE-ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-CCceeeEE
Q 013644 68 FTDDRKIITSSA--DGQVRLGQIFEDGRMDTKR-LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSATRLFY 143 (439)
Q Consensus 68 ~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 143 (439)
++++|+++.. +++|.+||+.+.+.+ .. +. .. ....+.+.|+++..+++.+.||.+.+|++.. ++......
T Consensus 118 --dg~~l~v~n~~~~~~v~v~d~~~~~~~--~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 118 --DGKFIVLQNASPATSIGIVDVAKGDYV--EDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp --TSSEEEEEEESSSEEEEEEETTTTEEE--EEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred --CCCEEEEECCCCCCeEEEEECCCCcEE--EEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 9999998764 689999999887554 33 32 21 2233667888766778889999999999875 44332211
Q ss_pred eeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccc---c-ccCCCccEE
Q 013644 144 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH---L-IGKNNIHIT 219 (439)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~i~ 219 (439)
....... ...+ ..+.+.|++ ..++..+.++.+.++|+....... ...+.... . .........
T Consensus 192 ~~~~~~~-----~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 192 SKQMFSV-----KDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV-------DGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp CCCCSCT-----TTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE-------EEEEESCCHHHHHTTCEECCSS
T ss_pred ccceEcC-----CCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee-------cccccccCccccccccccCCee
Confidence 0000000 0111 123334555 455556678899999987543110 00000000 0 000001111
Q ss_pred EEEEccCCCEEEEe-c-----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 220 GLAYSNTSELLISY-N-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 220 ~~~~~~~~~~l~~~-~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
.++++|+++.+++. . .+.|.+||+.+. +.+..+..+. +.+++ ++|+|
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----------------~~v~~i~~~~----p~~ia-~spdg 316 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----------------QRVARIPGRD----ALSMT-IDQQR 316 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----------------EEEEEEECTT----CCEEE-EETTT
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----------------cEEEEEecCC----eeEEE-ECCCC
Confidence 36889998766654 2 248999999876 5666666654 67777 89999
Q ss_pred ceEEEeCCCCeEEEEecCCC--ceeEeecccccceEEEeecCCCc
Q 013644 288 EYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIP 330 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~ 330 (439)
++|++++. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 317 ~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99998887 99999999999 99988876777788999999986
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=2.6e-17 Score=140.21 Aligned_cols=245 Identities=14% Similarity=0.173 Sum_probs=165.4
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeee-----cCCcccEEEEEEe-ecCCCcEEEEecC-CCcEE
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYL-----SGHLDNIFQTRIM-PFTDDRKIITSSA-DGQVR 84 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-----~~h~~~v~~~~~~-~~~~~~~l~s~~~-dg~i~ 84 (439)
+|...+.+++++++|+++++...++.|.+||.. +..+..+. .++...+..+++. + ++.++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEEE
Confidence 455789999999999988888888999999977 43333321 1344578899995 5 6666666543 78999
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+|+. +++.... ....+...+..++++|++. ++++...++.|.+||.. ++....+.... +...+..++
T Consensus 104 ~~d~-~g~~~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---------~~~~p~~i~ 170 (286)
T 1q7f_A 104 IYNQ-YGQFVRK-FGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSK---------HLEFPNGVV 170 (286)
T ss_dssp EECT-TSCEEEE-ECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTT---------TCSSEEEEE
T ss_pred EECC-CCcEEEE-ecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCC---------ccCCcEEEE
Confidence 9994 4444322 1123446789999999997 77777788999999964 33333322100 122367777
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEcc
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN 244 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~ 244 (439)
++|++ +++++...++.|++||... +
T Consensus 171 ~~~~g-~l~v~~~~~~~i~~~~~~g-~----------------------------------------------------- 195 (286)
T 1q7f_A 171 VNDKQ-EIFISDNRAHCVKVFNYEG-Q----------------------------------------------------- 195 (286)
T ss_dssp ECSSS-EEEEEEGGGTEEEEEETTC-C-----------------------------------------------------
T ss_pred ECCCC-CEEEEECCCCEEEEEcCCC-C-----------------------------------------------------
Confidence 77765 5666666677777777532 1
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC-eEEEEecCCCceeEeeccccc--ceE
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRH--VVN 321 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~ 321 (439)
....+........+..++ ++++|+++++...++ .|.+|+. +++.+..+..+.. .+.
T Consensus 196 -------------------~~~~~~~~g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 196 -------------------YLRQIGGEGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp -------------------EEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred -------------------EEEEEccCCccCCCcEEE-ECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 001111110011266777 789999888888776 9999995 4666666655432 478
Q ss_pred EEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
+++++|+|+++++ +.|+.|++|++...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 9999999987777 57999999998653
No 173
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.83 E-value=4.5e-16 Score=133.43 Aligned_cols=286 Identities=7% Similarity=0.017 Sum_probs=195.3
Q ss_pred eeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcc
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIF 89 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 89 (439)
+..+...+.+++++++|+++++...++.|.+||.. +.........+...+.++++.+ ++.++++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence 44566789999999999988877778899999987 4332222233456789999998 88888887778899999975
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
++ .....+......+..+++.+++. ++++...++.|..||. +++.... .. .. ....+..+++.+++
T Consensus 87 -g~-~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~-~~---~~------~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 87 -GI-IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREY-EL---PN------KGSYPSFITLGSDN 152 (299)
T ss_dssp -SC-EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEE-EC---SS------TTCCEEEEEECTTS
T ss_pred -Cc-EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEe-cC---CC------CCCCCceEEEcCCC
Confidence 33 22223333456789999999886 6667777889999998 5543322 11 00 12357899999987
Q ss_pred CcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCC
Q 013644 170 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLG 248 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 248 (439)
+++++...++.|..||. +++... + ........+..++++++|+++++.. ++.|.+|+. ++
T Consensus 153 -~l~v~~~~~~~i~~~~~-~g~~~~----------~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-- 213 (299)
T 2z2n_A 153 -ALWFTENQNNAIGRITE-SGDITE----------F----KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-- 213 (299)
T ss_dssp -CEEEEETTTTEEEEECT-TCCEEE----------E----ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC--
T ss_pred -CEEEEeCCCCEEEEEcC-CCcEEE----------e----eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC--
Confidence 67777666789999998 544211 0 0122344578999999999877775 789999998 44
Q ss_pred CCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe-ecccccceEEEeecC
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHP 327 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~ 327 (439)
....+........+.+++ ++++|++.++...++.|..|+. +++.... +..+...+.++++ +
T Consensus 214 ---------------~~~~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~ 275 (299)
T 2z2n_A 214 ---------------EITEFKIPTPNARPHAIT-AGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D 275 (299)
T ss_dssp ---------------CEEEEECSSTTCCEEEEE-ECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C
T ss_pred ---------------cEEEEECCCCCCCceeEE-ECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-c
Confidence 111222221222477888 7999997777767899999998 4543322 2344567899999 8
Q ss_pred CCcEEEEEecCCeEEEeccCCCC
Q 013644 328 HIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 328 ~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
++++.++.. .+.+..+++.+++
T Consensus 276 ~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 276 GETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp SSCEEEEET-TTEEEEEEEC---
T ss_pred CCCEEEEec-CCcEEEEEcCccc
Confidence 888777655 5677777776543
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=5.6e-18 Score=162.02 Aligned_cols=298 Identities=12% Similarity=0.100 Sum_probs=190.8
Q ss_pred ecCCcccEEEEEEeecCCCcEEEEe--cCCCcEEEEEcccCceeeeEEecCCCCceE---------EEEEc--cCCCc-E
Q 013644 53 LSGHLDNIFQTRIMPFTDDRKIITS--SADGQVRLGQIFEDGRMDTKRLGKHQGRVY---------KLAVE--PGSPY-I 118 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~-~ 118 (439)
+.+|...+..++|++ +.-++++. +.++...||....+... ..+..+...+. ...|+ ||++. +
T Consensus 19 ~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVG--DEVWWVAPRPAEAGRATLVRRRADGAE--ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHTCSCCEEEEEET--TEEEEEEEETTTTTEEEEEEECTTSCE--EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HhhcCCccceeEEcC--CeEEEEecCcccCCcEEEEEECCCCCc--ceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 457888999999997 76666666 56889999997444433 44666666655 56666 99997 6
Q ss_pred EEEeCCCCcEEEEEcc--C-CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC----------ceEEEE
Q 013644 119 IYSCGEDGFVQHFDLR--S-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD----------EYARVY 185 (439)
Q Consensus 119 l~s~~~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~ 185 (439)
+++...+..|.++++. . +.. ..+.... ...+...+..++|+|++ +.|++++.+ ..|++|
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~------~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS------AVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCC-EECSCCC------CSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCCC-EeccCCc------cCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEE
Confidence 6666556777777765 2 332 2221100 00134568899999998 677777766 589999
Q ss_pred eCcC------CcccCCCCCCCCccccccccccc-CCCccEEEEEEccCCCEEEEec-C--------CeEEEEEcc-CCCC
Q 013644 186 DIRK------CHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYN-D--------ELVYLFEKN-MGLG 248 (439)
Q Consensus 186 d~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-d--------~~i~i~d~~-~~~~ 248 (439)
|+.+ ++. ..+ . .+...+..++|+|||++|+..+ + ..|++||+. ++.
T Consensus 167 ~~~~~~~~~~~~~---------------~~l-~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~- 229 (662)
T 3azo_A 167 PLDGSAAADRSAV---------------REL-SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR- 229 (662)
T ss_dssp ETTSTTTTCGGGS---------------EES-SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-
T ss_pred ECCCCccccCCce---------------eEE-EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-
Confidence 9987 331 111 2 3345677889999999888664 4 379999987 330
Q ss_pred CCCCCCCcccccccccceeE-eCCCCcceeeeEEeeCCCCceEEEeCCCC--eEEEEecCCCceeEeecccccc------
Q 013644 249 PSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSDCG--HLFIWKKKGGKLVRLMVGDRHV------ 319 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~------ 319 (439)
......+ .++.. .+..+. |+|||+++++++.++ .|++|++.+++.......+...
T Consensus 230 -------------~~~~~~l~~~~~~--~~~~~~-~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~ 293 (662)
T 3azo_A 230 -------------FADTRTLLGGPEE--AIAQAE-WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWT 293 (662)
T ss_dssp -------------EEEEEEEEEETTB--CEEEEE-ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCS
T ss_pred -------------ccccEEeCCCCCc--eEcceE-ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccc
Confidence 0022223 23333 377788 899999888888888 6777777777765554443322
Q ss_pred --eEEEeecCCCcEEEEEecCCeEEEe--ccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEE--EEecccce
Q 013644 320 --VNQLEPHPHIPMFATCGIEKTVKLW--APMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV--LRLQRRQT 393 (439)
Q Consensus 320 --v~~~~~s~~~~~l~s~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~--w~~~~~~~ 393 (439)
+..++|+|+++++++++. +.++|| ++.+++...+..+...+........+...+++.+.+....+ +++.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 567889999999999998 999999 55555555554443333222011122234445566654444 45556655
Q ss_pred eee
Q 013644 394 LAY 396 (439)
Q Consensus 394 ~~~ 396 (439)
..+
T Consensus 373 ~~l 375 (662)
T 3azo_A 373 RTI 375 (662)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=2e-17 Score=144.26 Aligned_cols=276 Identities=9% Similarity=0.044 Sum_probs=185.1
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
...|.+++|++++..++..+.++.++.|. ...... +..+...+.+++|+| ++++++++..++.|.+||..+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~--~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLE-ISKKGLQLEGLNFDR--QGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEE-EESSCCCEEEEEECT--TSCEEEEETTTCEEEEECTTTCCE
T ss_pred ccccceeeecCCccceeEEeecccCcccc---cceeEE-EeccCccccCcEECC--CCCEEEEECCCCEEEEEeCCCCcE
Confidence 35578899999988888778888999993 223333 345666789999998 999888888899999999977654
Q ss_pred eeeEEecCCCCceEEEEEccCCCcEEEEeCCC----CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 94 MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED----GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
... ...+...+.+++++|++. ++++...+ +.|.+||..++.....+... . ....+..++++|++
T Consensus 79 ~~~--~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~-------~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 79 KRP--FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--S-------TAYCIDDMVFDSKG 146 (333)
T ss_dssp EEE--EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSS--S-------SCCCEEEEEECTTS
T ss_pred EEE--eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--c-------cCCcccceEECCCC
Confidence 422 224567899999999997 56666655 68999998887654332210 0 23458899999987
Q ss_pred CcEEEEeec------CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEE
Q 013644 170 PNYFAVGGS------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLF 241 (439)
Q Consensus 170 ~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~ 241 (439)
+++++... .+.|..+|..+++.. .. ......+..++|+|+++.|+.+ . ++.|.+|
T Consensus 147 -~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 147 -GFYFTDFRGYSTNPLGGVYYVSPDFRTVT---------------PI-IQNISVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp -CEEEEECCCBTTBCCEEEEEECTTSCCEE---------------EE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred -CEEEEeccccccCCCceEEEEeCCCCEEE---------------Ee-ecCCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 66665543 356777776543310 00 1112347889999999855444 3 7899999
Q ss_pred EccCCCCCCCCCCCccccccc--ccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccccc-
Q 013644 242 EKNMGLGPSPLSLSPEDLQKR--EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH- 318 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~- 318 (439)
++...... .... .....+.++ ..+..++ ++++|++.++...++.|.+|+. +++.+..+..+..
T Consensus 210 d~~~~g~~---------~~~~~~~~~~~~~~~---~~~~~i~-~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~ 275 (333)
T 2dg1_A 210 ALEDDGVT---------IQPFGATIPYYFTGH---EGPDSCC-IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 275 (333)
T ss_dssp EECTTSSS---------EEEEEEEEEEECCSS---SEEEEEE-EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EecCCCcC---------cccccceEEEecCCC---CCCCceE-ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCc
Confidence 98632100 0000 000011111 2367777 8999998888877899999998 4666666654432
Q ss_pred -----ceEEEeecCCCcEEEEEecC
Q 013644 319 -----VVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 319 -----~v~~~~~s~~~~~l~s~~~d 338 (439)
.+.+++|+|+++.|+.++.+
T Consensus 276 ~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 276 EGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp GTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cccccCcceEEECCCCCEEEEEeCc
Confidence 68999999998766655555
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=3.2e-16 Score=144.32 Aligned_cols=310 Identities=12% Similarity=0.039 Sum_probs=205.7
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCC--CCcceeeeecCCcccEEEEEEe----ecCCCcEEEEe
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWK--DRREKFSYLSGHLDNIFQTRIM----PFTDDRKIITS 77 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~~~~~----~~~~~~~l~s~ 77 (439)
.+++.++... ..+..+.|+|||+++++++.|+.|.+||+. +.+.+.++..+ .....++|+ | ++++++++
T Consensus 187 ~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~p--DGk~l~v~ 261 (567)
T 1qks_A 187 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGW--EDKYAIAG 261 (567)
T ss_dssp CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTC--TTTEEEEE
T ss_pred CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCC--CCCEEEEE
Confidence 4556666543 346789999999999999999999999995 66555554322 345789999 7 99988877
Q ss_pred cC-CCcEEEEEcccCceeeeEEecC--------CCC-ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeecc
Q 013644 78 SA-DGQVRLGQIFEDGRMDTKRLGK--------HQG-RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 78 ~~-dg~i~iw~~~~~~~~~~~~~~~--------~~~-~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 147 (439)
.. +++|.++|..+.+.+......+ |.. .+..+..+++++.++++...+|.|.++|....+........
T Consensus 262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-- 339 (567)
T 1qks_A 262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-- 339 (567)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--
T ss_pred EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--
Confidence 65 5999999998877664433322 222 67889999998878888888899999999876533322211
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC-
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT- 226 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 226 (439)
.......+.|+|++..++++...++.|.++|+.+++........ . ...|.+.-..+ +.|+
T Consensus 340 --------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg---------g-~~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 340 --------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG---------G-QTPHPGRGANF-VHPTF 400 (567)
T ss_dssp --------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS---------S-SSBCCTTCEEE-EETTT
T ss_pred --------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc---------C-cCCCCccceee-ECCCC
Confidence 12235678899998555556667889999999987743322110 0 01222211122 5787
Q ss_pred CCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-------CC
Q 013644 227 SELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-------CG 297 (439)
Q Consensus 227 ~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-------dg 297 (439)
+.+++++. ++.|.++|......+ ...++.++.+...... -..+. .+|+++++.+... .+
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~---------~~~~kvv~~i~~~g~g--~~~i~-~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHP---------DNAWKILDSFPALGGG--SLFIK-THPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCT---------TTBTSEEEEEECSCSC--CCCEE-CCTTCSEEEEECTTCSSHHHHT
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCc---------cccCEEEEEEecCCCC--CEEEE-eCCCCCeEEEecCCCCCcccCc
Confidence 45555653 689999998763111 0112445555544322 23344 7999999988653 35
Q ss_pred eEEEEecCCC-----ce-eEeec--------ccccceEEEeecCCCcEEEEEe-----cCCeEEEeccCCCCC
Q 013644 298 HLFIWKKKGG-----KL-VRLMV--------GDRHVVNQLEPHPHIPMFATCG-----IEKTVKLWAPMPTDF 351 (439)
Q Consensus 298 ~i~iwd~~~~-----~~-~~~~~--------~h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~ 351 (439)
+|.++|+.+. .. ...+. .-...+..+.|+|+|+.+..+. .++.|.|+|.++.++
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 9999998876 21 12221 1235788999999999766553 379999999988765
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=2.1e-17 Score=144.96 Aligned_cols=265 Identities=11% Similarity=0.126 Sum_probs=170.3
Q ss_pred cceEEEEECCCCCEEEEec---------CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---C-
Q 013644 15 GCVNAVEFNSTGDFLVSGS---------DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---G- 81 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g- 81 (439)
..+..+++ ||++++... .++.|.+|++.+++.. . + ..+..++|+| +|++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~-l----~~~~~~~~Sp--Dg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-F-I----ENATMPRISP--DGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-E-E----ESCEEEEECT--TSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-E-c----ccCCCeEECC--CCCEEEEEEeccCCCc
Confidence 45777888 898887642 2568999999887532 2 2 5678899999 99999887653 3
Q ss_pred -cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC--------------------------CCcEEEEEcc
Q 013644 82 -QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE--------------------------DGFVQHFDLR 134 (439)
Q Consensus 82 -~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--------------------------dg~i~iwd~~ 134 (439)
.|.+|++.+++.... ..+.. +..++|+|+++.++++... ...|++||+.
T Consensus 85 ~~l~~~~~~~g~~~~l---~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 85 SEIWVADLETLSSKKI---LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEEETTTTEEEEE---EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred ceEEEEECCCCceEEE---EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 377778876554432 22233 8999999999866655422 3578999998
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc-------eEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-------YARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
+++....+.. . .+..+.|+|++ +++++..++ ...+|.+.+++.
T Consensus 161 ~~~~~~~l~~-~------------~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~--------------- 210 (347)
T 2gop_A 161 SEEVIEEFEK-P------------RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE--------------- 210 (347)
T ss_dssp TTEEEEEEEE-E------------TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE---------------
T ss_pred CCeEEeeecC-C------------CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce---------------
Confidence 8776344432 1 26778999986 666665431 334444333321
Q ss_pred cccccCCCccEEEEEEccCCCEEEEec-C--------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceee
Q 013644 208 RHLIGKNNIHITGLAYSNTSELLISYN-D--------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 278 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (439)
..+ ..+ ..+..+ +|+|+.|+..+ + ..|++|| ++ +.......+.. .+.
T Consensus 211 ~~l-~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------~~~~l~~~~~~--~~~ 266 (347)
T 2gop_A 211 EKM-FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------EVMGILDEVDR--GVG 266 (347)
T ss_dssp EEE-EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------CEEESSTTCCS--EEE
T ss_pred EEe-ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------ceEeccccCCc--ccC
Confidence 111 112 334444 99998776654 3 3677887 33 11112222222 366
Q ss_pred e-EEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeE-EEeccCCCCCCCCC
Q 013644 279 G-VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTV-KLWAPMPTDFPPLP 355 (439)
Q Consensus 279 ~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i-~iw~~~~~~~~~~~ 355 (439)
. +. |+ ++ ++++++.++.+++| +.+++.... ..+...|.+++|+| .++++++.++.. .+|.+. ++...+.
T Consensus 267 ~~~~-~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt 337 (347)
T 2gop_A 267 QAKI-KD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLT 337 (347)
T ss_dssp EEEE-ET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECC
T ss_pred CccE-Ec-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEec
Confidence 5 66 78 88 88999999999999 886665444 34577899999999 677777777654 777765 4433333
No 178
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=1.1e-17 Score=161.56 Aligned_cols=213 Identities=10% Similarity=0.098 Sum_probs=142.7
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC----
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---- 179 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 179 (439)
....++.|+|++. +++++ |+.|++||+.+++....+...... ........+.|+|++ +.|+.++.+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Spdg-~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTFD------EFGHSINDYSISPDG-QFILLEYNYVKQW 86 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTTT------TCCSCCCEEEECTTS-SEEEEEEEEEECS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEEEechhhh------hhcccccceEECCCC-CEEEEEECCeeeE
Confidence 3456899999996 56665 899999999999876555432221 122233558899998 777777765
Q ss_pred -----ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCC
Q 013644 180 -----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 180 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~ 254 (439)
+.+.+||+.+++... +..+...+...+|||||+.||.+.++.|++|++.++.... ...
T Consensus 87 r~~~~~~~~~~d~~~~~~~~----------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~ 149 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLIT----------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITW 149 (740)
T ss_dssp SSCEEEEEEEEETTTTEECC----------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCS
T ss_pred EEccceEEEEEECCCCcEEE----------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcC
Confidence 567799999876321 1334567899999999999999999999999998762110 000
Q ss_pred CcccccccccceeEeCCCCc-------ceeeeEEeeCCCCceEEEeCCC-------------------------------
Q 013644 255 SPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDEYVMSGSDC------------------------------- 296 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~s~~~~~l~~~~~d------------------------------- 296 (439)
.......+.++... .....+. |||||++||.++.|
T Consensus 150 ------~g~~~~~~~g~~~~v~~ee~~~~~~~~~-wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 150 ------TGKEDIIYNGITDWVYEEEVFSAYSALW-WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp ------CCBTTTEEESBCCHHHHHHTSSSSBCEE-ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ------CCCccceecCcccccccchhcCCCcceE-ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 00011112222110 1123466 89999999886422
Q ss_pred -----CeEEEEecCC---Cc--eeEeec------ccccceEEEeecCCCcEEEEEec----CCeEEEeccCCCC
Q 013644 297 -----GHLFIWKKKG---GK--LVRLMV------GDRHVVNQLEPHPHIPMFATCGI----EKTVKLWAPMPTD 350 (439)
Q Consensus 297 -----g~i~iwd~~~---~~--~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~----dg~i~iw~~~~~~ 350 (439)
..|++||+.+ ++ ....+. +|...+..++|+|||++++.... +..|.+||+.+++
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 1588899988 73 222333 37778999999999997665543 3479999998876
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=3.6e-18 Score=152.78 Aligned_cols=265 Identities=8% Similarity=0.015 Sum_probs=163.0
Q ss_pred EEeCCCCcceeeeecCCcc-----cEEEEEEeecCCCcEEEEecCC---CcEEEEEcccCceeeeEEecCCCCc-eEEEE
Q 013644 40 FWDWKDRREKFSYLSGHLD-----NIFQTRIMPFTDDRKIITSSAD---GQVRLGQIFEDGRMDTKRLGKHQGR-VYKLA 110 (439)
Q Consensus 40 iw~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~-v~~i~ 110 (439)
..|..++..+..+ ..+.. .+..++|+| +|++|+.+... ..|.+|++.+++.. .+..+... ...+.
T Consensus 14 ~~d~~~g~~~~~l-~~~~~~~~~~~~~~~~~Sp--dG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~ 87 (396)
T 3c5m_A 14 FVDSDTQVKVTRL-TPTDIICHRNYFYQKCFTQ--DGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGF 87 (396)
T ss_dssp EECTTTCCEEEEC-SCTTSCEECCCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCE
T ss_pred eecCCCCcceEEE-ecCCCCccceeeecCcCCC--CCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccce
Confidence 3466666544443 33322 266789999 99998876543 46888888766543 23333333 33478
Q ss_pred EccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee-------------EEEeecCCCCcEEEEe-
Q 013644 111 VEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL-------------NAIVIDPRNPNYFAVG- 176 (439)
Q Consensus 111 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~~l~~~- 176 (439)
|+|++++ |+.++.++.|++||+.+++........... ......+ ..+.++|++ +.++.+
T Consensus 88 ~spdg~~-l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~ 160 (396)
T 3c5m_A 88 ISTDERA-FFYVKNELNLMKVDLETLEEQVIYTVDEEW-----KGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAE 160 (396)
T ss_dssp ECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTE-----EEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHH
T ss_pred ECCCCCE-EEEEEcCCcEEEEECCCCCcEEEEeccccc-----CCCCCEEEeccCCccccccccccccCCCC-cceeeee
Confidence 9999985 556667778999999988765544321100 0000000 004567876 444433
Q ss_pred ----ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec-C------CeEEEEEcc
Q 013644 177 ----GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-D------ELVYLFEKN 244 (439)
Q Consensus 177 ----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d------~~i~i~d~~ 244 (439)
..+..|.+||+.+++.. .+ ..+...+..+.|+| +++.|+... + ..|.+|++.
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~---------------~~-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELE---------------VI-HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEE---------------EE-EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred eccCCCcceEEEEECCCCcEE---------------ee-ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 45678999999876521 11 23455688999999 787655543 2 468888876
Q ss_pred CCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC-----CeEEEEecCCCceeEeecccccc
Q 013644 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GHLFIWKKKGGKLVRLMVGDRHV 319 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~ 319 (439)
.+ ....+..+.....+..+. |+|+|++|+.++.+ +.|++||+.+++........ .
T Consensus 225 ~~-----------------~~~~l~~~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~ 284 (396)
T 3c5m_A 225 GS-----------------NVRKIKEHAEGESCTHEF-WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--P 284 (396)
T ss_dssp SC-----------------CCEESSCCCTTEEEEEEE-ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--S
T ss_pred CC-----------------ceeEeeccCCCccccceE-ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--C
Confidence 54 112222222122466777 89999988776543 45999999888654433211 1
Q ss_pred eEEEeecC-CCcEEEEEe----------------cCCeEEEeccCCCCCCCC
Q 013644 320 VNQLEPHP-HIPMFATCG----------------IEKTVKLWAPMPTDFPPL 354 (439)
Q Consensus 320 v~~~~~s~-~~~~l~s~~----------------~dg~i~iw~~~~~~~~~~ 354 (439)
.. +.|+| +|+++++++ .++.|.+|++.+++...+
T Consensus 285 ~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 285 CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 23 88999 999888765 347899999987765433
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.77 E-value=1.2e-15 Score=130.45 Aligned_cols=246 Identities=9% Similarity=-0.003 Sum_probs=168.6
Q ss_pred ecCCcccEEEEEEeecCCCc-EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEE
Q 013644 53 LSGHLDNIFQTRIMPFTDDR-KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131 (439)
Q Consensus 53 ~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 131 (439)
+..+.....+++|+| +++ +++++..++.|..|+..++ . ..+..+...+.+++++|++. ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ--L--SPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC--E--EEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC--e--EEEECCCCCcceeeECCCCc-EEEEecCCCeEEEE
Confidence 345556778999999 888 7788888999999999765 3 33445667899999999997 67677777899999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEE----eec-------------CceEEEEeCcCCcccC
Q 013644 132 DLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAV----GGS-------------DEYARVYDIRKCHWYS 194 (439)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~ 194 (439)
|..+++........... ....++.++++|+| +++++ |+. .+.|..++.. ++.
T Consensus 96 d~~~g~~~~~~~~~~~~-------~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-- 164 (296)
T 3e5z_A 96 REPGGEWESIADSFEGK-------KLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-- 164 (296)
T ss_dssp CSTTCCEEEEECEETTE-------ECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--
T ss_pred cCCCCcEEEEeeccCCC-------CCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCE--
Confidence 99888754433211100 12246779999987 67776 331 3456666654 221
Q ss_pred CCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEcc-CCCCCCCCCCCccccccc-ccceeEeCC
Q 013644 195 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKN-MGLGPSPLSLSPEDLQKR-EEPQVYSGH 271 (439)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 271 (439)
. ....+......++|+|+++++++.. ++.|++|++. .+. . .....+..+
T Consensus 165 -------------~-~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--------------~~~~~~~~~~~ 216 (296)
T 3e5z_A 165 -------------S-APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--------------TEYQGVHFTVE 216 (296)
T ss_dssp -------------E-EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--------------EEEEEEEECCS
T ss_pred -------------E-EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--------------CcCCCeEeeCC
Confidence 0 1123345568899999999885555 7899999986 220 0 001222111
Q ss_pred CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee-cCCCcEEEEEecCCeEEEeccCCCC
Q 013644 272 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP-HPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 272 ~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
...+.+++ ++++|++.++. ++.|.+|+.. ++.+..+..+.. +++++| +|+++.|+.++.+ .+.-+++.+.+
T Consensus 217 --~~~p~~i~-~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 217 --PGKTDGLR-VDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp --SSCCCSEE-EBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred --CCCCCeEE-ECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 22356777 89999977766 7899999986 788888877777 899999 6899988888776 34455666555
Q ss_pred CC
Q 013644 351 FP 352 (439)
Q Consensus 351 ~~ 352 (439)
++
T Consensus 289 ~~ 290 (296)
T 3e5z_A 289 LE 290 (296)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=5.9e-17 Score=155.33 Aligned_cols=251 Identities=7% Similarity=-0.033 Sum_probs=157.5
Q ss_pred ccccceEEEEECCCCCEEE-----EecCCCeEEEEeCCCCcce-eeeecCCcccEEEEEEeecCCCcEEEEecCCCc---
Q 013644 12 GHKGCVNAVEFNSTGDFLV-----SGSDDKLVIFWDWKDRREK-FSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ--- 82 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~-----t~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~--- 82 (439)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+ ...+... ....++|+| |++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wsp--Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTP--DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEec--CCCEEEEEEecCCCCC
Confidence 4566799999999999999 4555679999999998754 2222111 126789999 9999999988776
Q ss_pred ----------EEEEEcccCce--eeeEEecCCCCceEEEEEccCCCcEEEEeCCC-C--cEEEEEccCCCceeeEEeecc
Q 013644 83 ----------VRLGQIFEDGR--MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-G--FVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 83 ----------i~iw~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~ 147 (439)
|++|++.++.. ........+...+..+.|+|+|++++++.... + .|++|+..+++... +..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~--- 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVK--- 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEE---
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eec---
Confidence 99999987653 22233344556789999999999766554433 2 56666544443322 221
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEee---cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS 224 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 224 (439)
+...+....+ +++. +++.+. .++.|.+||+.+++.
T Consensus 270 --------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------------------------------- 307 (695)
T 2bkl_A 270 --------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-------------------------------- 307 (695)
T ss_dssp --------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG--------------------------------
T ss_pred --------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc--------------------------------
Confidence 1112333334 4443 333333 135566666544220
Q ss_pred cCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 225 NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 225 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
.....+..+.....+..+. ++ ++.++++...|+..++|.+
T Consensus 308 --------------------------------------~~~~~l~~~~~~~~l~~~~-~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 308 --------------------------------------ASWKEIVPEDSSASLLSVS-IV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp --------------------------------------GGCEEEECCCSSCEEEEEE-EE-TTEEEEEEEETTEEEEEEE
T ss_pred --------------------------------------cCCeEEecCCCCCeEEEEE-EE-CCEEEEEEEECCEEEEEEE
Confidence 0011222222122356666 44 6778888888888888765
Q ss_pred C-CCceeEeeccc-ccceEEEeecCCCcEEEEE----ecCCeEEEeccCCCCCC
Q 013644 305 K-GGKLVRLMVGD-RHVVNQLEPHPHIPMFATC----GIEKTVKLWAPMPTDFP 352 (439)
Q Consensus 305 ~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~~~ 352 (439)
. +++....+..+ ...+..++++|+++.++.. ...++|.+|++.+++..
T Consensus 348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 4 45556666655 5678889999998866622 23578999999887653
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=7e-16 Score=148.32 Aligned_cols=283 Identities=7% Similarity=-0.042 Sum_probs=180.0
Q ss_pred CCCCEEEEecCC-----CeEEEEeCCCCccee-----eeecCCcccEEEEEEeecCCCcEEEEecCCC-----cEEEEEc
Q 013644 24 STGDFLVSGSDD-----KLVIFWDWKDRREKF-----SYLSGHLDNIFQTRIMPFTDDRKIITSSADG-----QVRLGQI 88 (439)
Q Consensus 24 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~ 88 (439)
|+|++++....+ +.+.+.+...+.... .+-.+|...+..++|+| |+++|+.+..++ +|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP--Dg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSE--DGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECT--TSSEEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECC--CCCEEEEEEcCCCCceEEEEEEEC
Confidence 889887755322 234444444433211 11124555788999999 999998765533 8999999
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc----------------EEEEEccCCCceeeEEeeccCCCCC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF----------------VQHFDLRSDSATRLFYCSSFSENSK 152 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~ 152 (439)
.+++.... .+.. ..+..++|+||++.++++ +.++. |++|++.+++....+.... .
T Consensus 159 ~tg~~~~~-~~~~--~~~~~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-~---- 229 (710)
T 2xdw_A 159 DGAKELPD-VLER--VKFSCMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-P---- 229 (710)
T ss_dssp TTTEEEEE-EEEE--ECSCCEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-T----
T ss_pred CCCCCCcc-cccC--cccceEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCCcccceEEecc-C----
Confidence 88776532 2221 236789999999965544 44443 9999998876432221111 0
Q ss_pred CCCceeeeEEEeecCCCCcEEEEeec-----CceEEEEeCcC------CcccCCCCCCCCcccccccccccCCCccEEEE
Q 013644 153 QPMNSIRLNAIVIDPRNPNYFAVGGS-----DEYARVYDIRK------CHWYSPISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 153 ~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
.+...+..+.|+|++ ++|+.++. +..|++||+.+ +.. ....+ ..+...+..
T Consensus 230 --~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------------~~~~l-~~~~~~~~~- 291 (710)
T 2xdw_A 230 --DEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------------KWVKL-IDNFEGEYD- 291 (710)
T ss_dssp --TCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------------CCEEE-ECSSSSCEE-
T ss_pred --CCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-------------ceEEe-eCCCCcEEE-
Confidence 023346789999998 55555543 56899999876 320 01111 222333333
Q ss_pred EEccCCCEEEEec-----CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC
Q 013644 222 AYSNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 296 (439)
Q Consensus 222 ~~~~~~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d 296 (439)
.|+|+|..|+..+ ...|.+|++.++.. ...+.+..+.....+..+. +++++.++++...+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--------------~~~~~l~~~~~~~~~~~~~-~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--------------SKWKVLVPEHEKDVLEWVA-CVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--------------GGCEEEECCCSSCEEEEEE-EETTTEEEEEEEET
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--------------ccceeccCCCCCCeEEEEE-EEcCCEEEEEEEEC
Confidence 4788887665543 23699999876510 1224455554433477777 56778888888888
Q ss_pred Ce--EEEEecCCCceeEeecccccceEEEeecCCCcEEEEE-e---cCCeEEEeccCCCC
Q 013644 297 GH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-G---IEKTVKLWAPMPTD 350 (439)
Q Consensus 297 g~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~---~dg~i~iw~~~~~~ 350 (439)
+. |++|++.+++.+..+..+.+.+..+.++|+++.++.. + ..++|..||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 74 6667777788778888777889999999998755533 2 34789999998776
No 183
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.76 E-value=3.5e-14 Score=121.67 Aligned_cols=281 Identities=7% Similarity=-0.013 Sum_probs=190.7
Q ss_pred ccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
.....+.++++.++|++.++...++.|.+|+.. ++.....+..+...+..+++.+ ++.++++...++.|..++.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence 345678999999999988887778999999987 4432222233446789999998 88888877778899999986 4
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
+. ....+......+.++++.+++. ++++...++.|..||.. ++... +.. .. ....+..+++.+++ +
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~-~~~---~~------~~~~~~~i~~d~~g-~ 158 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE-YDL---PN------KGSYPAFITLGSDN-A 158 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE-EEC---SS------TTCCEEEEEECTTS-S
T ss_pred Ce-EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE-ccC---CC------CCCCceeEEECCCC-C
Confidence 43 2233333446789999999887 66677768889999887 54332 211 10 12347889999987 6
Q ss_pred EEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPS 250 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~ 250 (439)
++++...++.|..||. +++... .........+..+++.++|.++++.. .+.|.+|+. .+
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~--------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g---- 218 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEE--------------YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG---- 218 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEE--------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC----
T ss_pred EEEEecCCCeEEEECC-CCcEEE--------------eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC----
Confidence 6666666788999998 433210 01122345688999999998887775 678999987 32
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeE-eecccccceEEEeecCCC
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~ 329 (439)
....+........+.+++ ++++|++.++...++.|..|+. +++... .+......+.++++.++|
T Consensus 219 -------------~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 219 -------------EISEYDIPTPNARPHAIT-AGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG 283 (300)
T ss_dssp -------------CEEEEECSSTTCCEEEEE-ECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS
T ss_pred -------------cEEEEECCCCCCCceEEE-ECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC
Confidence 111121111122377888 7899997777777899999998 454332 233334568899999999
Q ss_pred cEEEEEecCCeEEEeccC
Q 013644 330 PMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~~ 347 (439)
++.++.. . .|..+++.
T Consensus 284 ~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 284 SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CEEEECS-S-EEEEEEEC
T ss_pred CEEEEcc-C-ceEEeCCC
Confidence 8766655 4 67666653
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=9.5e-16 Score=132.83 Aligned_cols=263 Identities=8% Similarity=-0.023 Sum_probs=177.3
Q ss_pred CCCeEEEEeCCCCcceeeeec-----CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEE
Q 013644 34 DDKLVIFWDWKDRREKFSYLS-----GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYK 108 (439)
Q Consensus 34 ~dg~i~iw~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~ 108 (439)
.++.|.++|..+++....+.. ........+.+. ++.++++...++.|.+||..+++.+.. +. .......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCcE
Confidence 478999999998865443321 122346777774 566777777789999999988877543 33 3466889
Q ss_pred EEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-cCceEEEEeC
Q 013644 109 LAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDI 187 (439)
Q Consensus 109 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~ 187 (439)
+++++++ .++++...++.|.+||..+++....+....... .......+++ +++.++++.. .++.|.++|+
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~------~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM------ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT------TTCBCCCEEE--ETTEEEEEECTTCCEEEEEET
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc------cCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC
Confidence 9999998 466666578999999999988776655322000 0012344555 2435555544 4889999999
Q ss_pred cCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C----------CeEEEEEccCCCCCCCCCCCc
Q 013644 188 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D----------ELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d----------~~i~i~d~~~~~~~~~~~~~~ 256 (439)
.+++....+. . ......+.++|+|++++++. + +.|.++|..++
T Consensus 160 ~t~~~~~~i~---------------~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------- 213 (328)
T 3dsm_A 160 ETDKVVDELT---------------I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------- 213 (328)
T ss_dssp TTTEEEEEEE---------------C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----------
T ss_pred CCCeEEEEEE---------------c-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----------
Confidence 9876432111 1 12345788999999888775 4 68999998766
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe--ecccccceEEEeecC-CCcEEE
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHP-HIPMFA 333 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~s~-~~~~l~ 333 (439)
+....+..... .....++ ++|++++|+++.. .|.+||..+++.... +..+......++++| ++.+++
T Consensus 214 ------~v~~~~~~~~g-~~p~~la-~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 214 ------TVEKQFKFKLG-DWPSEVQ-LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp ------EEEEEEECCTT-CCCEEEE-ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred ------eEEEEEecCCC-CCceeEE-EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence 33333432211 1367888 8999998887765 899999988876421 222245688999999 555666
Q ss_pred EE----ecCCeEEEeccC
Q 013644 334 TC----GIEKTVKLWAPM 347 (439)
Q Consensus 334 s~----~~dg~i~iw~~~ 347 (439)
+. ..++.|.+|+..
T Consensus 284 a~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSSSEEEEEEECTT
T ss_pred EcccccccCCEEEEECCC
Confidence 65 568899999997
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=7.8e-16 Score=148.01 Aligned_cols=249 Identities=11% Similarity=0.040 Sum_probs=162.9
Q ss_pred cccceEEEEECCCCCEEEEecCCC-----eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc-----
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDK-----LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ----- 82 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~----- 82 (439)
|...+..++|||||++||.++.++ .|++||+.+++.....+.. ..+..++|+| |++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTH--DGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECT--TSSEEEEEECCCCSSCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEe--CCCEEEEEEECCcccccc
Confidence 445688999999999999765433 8999999998765433222 2366799999 9999999887766
Q ss_pred -----------EEEEEcccCcee--eeEEecCCCCceEEEEEccCCCcEEEEeCC----CCcEEEEEccC------CC-c
Q 013644 83 -----------VRLGQIFEDGRM--DTKRLGKHQGRVYKLAVEPGSPYIIYSCGE----DGFVQHFDLRS------DS-A 138 (439)
Q Consensus 83 -----------i~iw~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~------~~-~ 138 (439)
|++|++.++... .......|...+..+.|+|+|++++++... +..|++||+.+ +. .
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 999999876532 222223345668899999999976655431 56899999987 43 2
Q ss_pred eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC---ceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 139 TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
...+.. +...+.. .|+|++..+++.+..+ +.|.+||+.++... ....+.....
T Consensus 279 ~~~l~~-----------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~ 334 (710)
T 2xdw_A 279 WVKLID-----------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------------KWKVLVPEHE 334 (710)
T ss_dssp CEEEEC-----------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCS
T ss_pred eEEeeC-----------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------cceeccCCCC
Confidence 333322 1112222 4777775555554433 36999998765310 0011112222
Q ss_pred -ccEEEEEEccCCCEEEEec-CC--eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE
Q 013644 216 -IHITGLAYSNTSELLISYN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 216 -~~i~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~ 291 (439)
..+..+.|++++.++++.. ++ .|++|++.++ +....+..+. ..+..+. ++|+++.++
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------~~~~~l~~~~--~~v~~~~-~s~d~~~l~ 395 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG----------------ALLKIFPLEV--GSVVGYS-GQKKDTEIF 395 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC----------------CEEEEECCCS--SEEEEEE-CCTTCSEEE
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC----------------CEEEecCCCC--ceEEEEe-cCCCCCEEE
Confidence 3678889998788877775 66 4666776444 2334555553 3477777 788887665
Q ss_pred Ee----CCCCeEEEEecCCCc
Q 013644 292 SG----SDCGHLFIWKKKGGK 308 (439)
Q Consensus 292 ~~----~~dg~i~iwd~~~~~ 308 (439)
.. ...+.|++||+.+++
T Consensus 396 ~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECSSCCCEEEEEETTSSS
T ss_pred EEEeCCCCCCEEEEEECCCCc
Confidence 32 345899999998877
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=2.7e-15 Score=128.33 Aligned_cols=249 Identities=9% Similarity=0.034 Sum_probs=167.5
Q ss_pred eeeeeccccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEE
Q 013644 7 CGKLHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRL 85 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 85 (439)
+..+..+.....+++|+|+|+ +++++..++.|..|+..++ ... +..+...+.+++++| ++.++++...++.|.+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~l~~~~--dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-EMHPSHHQNGHCLNK--QGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-EESSCSSEEEEEECT--TCCEEEEETTTTEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-EECCCCCcceeeECC--CCcEEEEecCCCeEEE
Confidence 345556677788999999998 7888888999999998876 333 345677899999999 9998888777889999
Q ss_pred EEcccCceeeeEEe-cC-CCCceEEEEEccCCCcEEEE----eC-------------CCCcEEEEEccCCCceeeEEeec
Q 013644 86 GQIFEDGRMDTKRL-GK-HQGRVYKLAVEPGSPYIIYS----CG-------------EDGFVQHFDLRSDSATRLFYCSS 146 (439)
Q Consensus 86 w~~~~~~~~~~~~~-~~-~~~~v~~i~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~ 146 (439)
|+..+++....... .. ....+..++++|+|. ++++ ++ ..+.|..++.. ++. ..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~-- 169 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR-- 169 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC--
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec--
Confidence 99977664322111 11 123567899999997 5665 32 12345555544 332 22211
Q ss_pred cCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc-CCcccCCCCCCCCcccccccccccCCCccEEEEEEcc
Q 013644 147 FSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN 225 (439)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 225 (439)
+....+.++|+|++ +.+++.+.++.|.+|++. .++.. . ..... ..+...+..+++++
T Consensus 170 ---------~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~---------~--~~~~~-~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 170 ---------DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE---------Y--QGVHF-TVEPGKTDGLRVDA 227 (296)
T ss_dssp ---------CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE---------E--EEEEE-CCSSSCCCSEEEBT
T ss_pred ---------CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc---------C--CCeEe-eCCCCCCCeEEECC
Confidence 22346889999998 556777888999999986 33210 0 00111 12344566799999
Q ss_pred CCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecC
Q 013644 226 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 226 ~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 305 (439)
+|+++++. ++.|.+|+... +....+..+.. +.+++|-+|+++.|++++.+ .+..++.+
T Consensus 228 ~G~l~v~~-~~~v~~~~~~g-----------------~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 228 GGLIWASA-GDGVHVLTPDG-----------------DELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETN 285 (296)
T ss_dssp TSCEEEEE-TTEEEEECTTS-----------------CEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECS
T ss_pred CCCEEEEc-CCeEEEECCCC-----------------CEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcc
Confidence 99988877 88999999763 34445554443 67777337899988888765 55566666
Q ss_pred CCce
Q 013644 306 GGKL 309 (439)
Q Consensus 306 ~~~~ 309 (439)
+.++
T Consensus 286 ~~~~ 289 (296)
T 3e5z_A 286 VRGL 289 (296)
T ss_dssp CCBC
T ss_pred cccc
Confidence 5544
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=1.5e-14 Score=126.03 Aligned_cols=246 Identities=11% Similarity=0.024 Sum_probs=160.7
Q ss_pred eeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC----Cc
Q 013644 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD----GQ 82 (439)
Q Consensus 7 ~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~ 82 (439)
...+.++...+.+++|+|+|++++++..++.|.+||..+++... +...+...+.+++++| ++.++++...+ +.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-PFVSHKANPAAIKIHK--DGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECSSSSEEEEEECT--TSCEEEEECTTSSSCCE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-EeeCCCCCcceEEECC--CCcEEEEeCCCCCCCce
Confidence 34566677778999999999988888889999999998775433 2235667899999999 88888877666 68
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC------CCcEEEEEccCCCceeeEEeeccCCCCCCCCc
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE------DGFVQHFDLRSDSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (439)
|.+|+..++..........+...+..++++|++. ++++... .+.|..++..+++...... .
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~ 180 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ------------N 180 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE------------E
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeec------------C
Confidence 9999987665431211122446789999999997 5555543 3456666655544333221 1
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccc--cccCCCccEEEEEEccCCCEEEEe
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRH--LIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
...+..++|+|++..++++...++.|.+||+.. +.... .+.... .... ...+..++++++|+++++.
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~---------~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ---------PFGATIPYYFTG-HEGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE---------EEEEEEEEECCS-SSEEEEEEEBTTCCEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc---------cccceEEEecCC-CCCCCceEECCCCCEEEEE
Confidence 223678999998744556666788999999864 22110 000000 0011 1467889999999988777
Q ss_pred c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC----cceeeeEEeeCCCCceEEEeCCC
Q 013644 234 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPNDEYVMSGSDC 296 (439)
Q Consensus 234 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~s~~~~~l~~~~~d 296 (439)
. ++.|.+|+... +....+..+.. ...+.+++ |+|+++.|+.++.+
T Consensus 251 ~~~~~v~~~d~~g-----------------~~~~~~~~~~~~~g~~~~~~~~~-~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 251 YGQGRVLVFNKRG-----------------YPIGQILIPGRDEGHMLRSTHPQ-FIPGTNQLIICSND 300 (333)
T ss_dssp ETTTEEEEECTTS-----------------CEEEEEECTTGGGTCSCBCCEEE-ECTTSCEEEEEEEC
T ss_pred cCCCEEEEECCCC-----------------CEEEEEEcCCCccccccCcceEE-ECCCCCEEEEEeCc
Confidence 5 78999999742 23333433221 01367788 78998777655544
No 188
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=2.1e-15 Score=128.29 Aligned_cols=246 Identities=11% Similarity=0.138 Sum_probs=158.8
Q ss_pred CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec-CCCCcEEEEeec-
Q 013644 101 KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGS- 178 (439)
Q Consensus 101 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~- 178 (439)
++-..+.++++++++. ++++...++.|.+||.. ++....+.... ....+...+..+++. +++ +++++...
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-----~~~~~~~~p~~i~~~~~~g-~l~v~~~~~ 98 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECG-----KRDSQLLYPNRVAVVRNSG-DIIVTERSP 98 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBS-----SSTTCBSSEEEEEEETTTT-EEEEEECGG
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecccC-----CCcccccCceEEEEEcCCC-eEEEEcCCC
Confidence 3456789999999987 77787889999999987 44443332110 001123457889994 554 66666543
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcc
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
++.|++||. +++.+. .....+...+..++++|+|+++++.. ++.|.+|+....
T Consensus 99 ~~~i~~~d~-~g~~~~--------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------- 152 (286)
T 1q7f_A 99 THQIQIYNQ-YGQFVR--------------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----------- 152 (286)
T ss_dssp GCEEEEECT-TSCEEE--------------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----------
T ss_pred CCEEEEECC-CCcEEE--------------EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-----------
Confidence 789999994 443211 11112335678999999999888775 789999996432
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc--ccceEEEeecCCCcEEEEE
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~ 335 (439)
....+........+..++ ++++|+++++...++.|++|+.. ++.+..+..+ ...+..++++++|+++++.
T Consensus 153 ------~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 153 ------VLHKFGCSKHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIAD 224 (286)
T ss_dssp ------EEEEEECTTTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred ------EEEEeCCCCccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEe
Confidence 223333211222377888 89999988888889999999974 5666666543 3578999999999988888
Q ss_pred ecCC-eEEEeccCCCCCCCCCCchh--hhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 336 GIEK-TVKLWAPMPTDFPPLPDNAE--KIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 336 ~~dg-~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
..++ .|.+|+.....+..+..+.. .+..+. ...++.++++ +.|+.|++|++..
T Consensus 225 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~-~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 225 NHNNFNLTIFTQDGQLISALESKVKHAQCFDVA-LMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE-EETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCCEEEEEECCCCCEEEEEcccCCCCcceeEE-ECCCCcEEEE-CCCCeEEEEEccc
Confidence 8776 99999976543322221111 111111 2234445555 4577777777644
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=5.5e-14 Score=120.32 Aligned_cols=241 Identities=7% Similarity=0.022 Sum_probs=167.5
Q ss_pred CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc
Q 013644 55 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 55 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.+...+.++++.+ ++.++++...++.|.+|+.. +... ......+...+.++++.+++. ++++...++.|..|+..
T Consensus 12 ~~~~~~~~i~~d~--~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSD--KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECT--TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECC--CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC
Confidence 3446789999998 88888877778899999987 4332 223333557789999999987 66676778889999976
Q ss_pred CCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCC
Q 013644 135 SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 214 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
++. ..+.. .. ....+.++++.+++ .++++...++.|..||. +++.. . ......
T Consensus 87 -g~~-~~~~~---~~------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~----------~----~~~~~~ 139 (299)
T 2z2n_A 87 -GII-KEYTL---PN------PDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIR----------E----YELPNK 139 (299)
T ss_dssp -SCE-EEEEC---SS------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE----------E----EECSST
T ss_pred -CcE-EEEeC---CC------cCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEE----------E----ecCCCC
Confidence 332 22221 10 13357889999976 67777767889999998 43311 0 011223
Q ss_pred CccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 215 NIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 215 ~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
...+..+++.++|+++++.. ++.|..|+. ++ ....+........+.+++ ++++|++.++.
T Consensus 140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-----------------~~~~~~~~~~~~~~~~i~-~~~~g~l~v~~ 200 (299)
T 2z2n_A 140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SG-----------------DITEFKIPTPASGPVGIT-KGNDDALWFVE 200 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-----------------CEEEEECSSTTCCEEEEE-ECTTSSEEEEE
T ss_pred CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-----------------cEEEeeCCCCCCcceeEE-ECCCCCEEEEc
Confidence 45688999999998888775 789999998 43 111121111122367788 78999988877
Q ss_pred CCCCeEEEEecCCCceeEe-ecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 294 SDCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 294 ~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
..++.|.+|+. +++.... +..+...+.+++++++|+++++...++.|..|+..
T Consensus 201 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 201 IIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred cCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 77899999999 6664432 23344678999999999977776678899999984
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=3.6e-15 Score=128.76 Aligned_cols=286 Identities=10% Similarity=0.009 Sum_probs=188.7
Q ss_pred EEEECCCCCEEEEecC-----CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec----------CCCcE
Q 013644 19 AVEFNSTGDFLVSGSD-----DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS----------ADGQV 83 (439)
Q Consensus 19 ~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i 83 (439)
.....|+++.+..... ++.|.+.|..+.+.+..+-.+.. + . ++++| ++++++++. .++.|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVAD--DGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECC--CCCEEEEEcccccccccCCCCCEE
Confidence 3455789988877754 67999999999887766644433 3 4 99999 999888765 36789
Q ss_pred EEEEcccCceeeeEEecC-----CCCceEEEEEccCCCcEEEEeC-CCCcEEEEEccCCCceeeEEeeccCCCCCCCCce
Q 013644 84 RLGQIFEDGRMDTKRLGK-----HQGRVYKLAVEPGSPYIIYSCG-EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (439)
.+||..+.+......+.. .......++|+|+|++++++.. .++.|.++|+.+++.+..+...
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------ 179 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------ 179 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC------------
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------
Confidence 999999887764433332 0124567999999997665554 3789999999999988777531
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccccccCCCccE-EEEEE-ccCCCEEEEec
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAY-SNTSELLISYN 234 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-~~~~~~l~~~~ 234 (439)
. +....|.+.+.+++.+.||.+.+.++.. ++..... . ..+.....++ ....| .++|+++..+.
T Consensus 180 g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~---------~~~~~~~~~~~~~~~~~~~dG~~~~vs~ 245 (386)
T 3sjl_D 180 D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--T---------EVFHPEDEFLINHPAYSQKAGRLVWPTY 245 (386)
T ss_dssp S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--C---------CCCSCTTSCBCSCCEEETTTTEEEEEBT
T ss_pred C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--c---------ceeccccccccccceeEcCCCcEEEEeC
Confidence 1 1122344446777888889988888876 4421100 0 0000111111 12255 47888777777
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEe--------CCCCcceeeeEEeeCCCCceEEEeCC----------C
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--------GHRNSQTVKGVNFFGPNDEYVMSGSD----------C 296 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~s~~~~~l~~~~~----------d 296 (439)
++.+++.|+.+.... ....+. ....+.....+. ++++++.++.... .
T Consensus 246 ~g~V~v~d~~~~~~~--------------v~~~~~~~~~~~~~~g~~p~g~q~~a-~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAK--------------FLPAVEALTEAERADGWRPGGWQQVA-YHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TSEEEEEECTTSSCE--------------ECCCEESSCHHHHHTTEEECSSSCEE-EETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCEEEEEECCCCcce--------------eecceeccccccccccccCCCcceee-ECCCCCeEEEEeccccccccCCCC
Confidence 899999998765210 111111 000011123355 6788887776532 2
Q ss_pred CeEEEEecCCCceeEeecccccceEEEeecCCCc-EEEEE-ecCCeEEEeccCCCCC
Q 013644 297 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-MFATC-GIEKTVKLWAPMPTDF 351 (439)
Q Consensus 297 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~ 351 (439)
+.|.++|+.+++.+..+..- ..+..|++++|++ +|+++ ..++.|.++|..+++.
T Consensus 311 ~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 57999999999999887642 4678999999997 66554 5589999999988775
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=9.5e-16 Score=134.43 Aligned_cols=257 Identities=9% Similarity=0.114 Sum_probs=157.3
Q ss_pred cEEEEEEeecCCCcEEEEec---------CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC--C-
Q 013644 59 NIFQTRIMPFTDDRKIITSS---------ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED--G- 126 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g- 126 (439)
.+..+++ +|+.++... .++.|.+|++.+++.. .+ ..+..++|+|+|++++++.... +
T Consensus 16 ~~~~~~~----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 16 YLSDPRT----KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp EEEEEEE----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EcccceE----CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 4555555 456655432 2567999999876543 23 5678899999999655444322 3
Q ss_pred -cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec---------------------------
Q 013644 127 -FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS--------------------------- 178 (439)
Q Consensus 127 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------------------------- 178 (439)
.|.+|++.+++....... .. +..++|+|++ +.|+.++.
T Consensus 85 ~~l~~~~~~~g~~~~l~~~------------~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEA------------KN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE------------SE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------C
T ss_pred ceEEEEECCCCceEEEEcC------------CC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 478888887765544432 23 8899999998 55665543
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C------C-eEEEEEccCCCCCC
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D------E-LVYLFEKNMGLGPS 250 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d------~-~i~i~d~~~~~~~~ 250 (439)
...|.+||+.+++.+ ..+ .. . .+..+.|+|+| +++++. + . ...+|.+.++
T Consensus 151 ~~~l~~~d~~~~~~~--------------~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~---- 208 (347)
T 2gop_A 151 KTTFWIFDTESEEVI--------------EEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG---- 208 (347)
T ss_dssp EEEEEEEETTTTEEE--------------EEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT----
T ss_pred cceEEEEECCCCeEE--------------eee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC----
Confidence 357899998876520 111 11 2 57788999999 777664 2 2 3344444332
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC--------CeEEEEecCCCceeEeecccccceEE
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKLVRLMVGDRHVVNQ 322 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~ 322 (439)
....+..+ . .+.. ++|+|++|+.++.+ ..|.+|| +++......+|...+..
T Consensus 209 -------------~~~~l~~~-~--~~~~---~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~ 267 (347)
T 2gop_A 209 -------------KEEKMFEK-V--SFYA---VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ 267 (347)
T ss_dssp -------------EEEEEEEE-E--SEEE---EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE
T ss_pred -------------ceEEeccC-c--ceee---ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC
Confidence 22233322 2 1333 37999988876643 4788888 66666666666778886
Q ss_pred -EeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEE-EEEEec
Q 013644 323 -LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM-HVLRLQ 389 (439)
Q Consensus 323 -~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v-~~w~~~ 389 (439)
+.|+ ++ ++++++.++.++|| +.+++...+..+...+....+ .. ..+++.+.++.. .+|.+.
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~-s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV-DE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE-SS--SEEEEEECSSSCCEEEEES
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee-eC--cEEEEEcCCCChHHheEeC
Confidence 9999 88 99999999999999 874443222222222322222 22 344555544443 666665
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=8.5e-15 Score=123.44 Aligned_cols=241 Identities=8% Similarity=-0.024 Sum_probs=163.6
Q ss_pred cEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC
Q 013644 59 NIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS 137 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 137 (439)
...++++.+ ++.+++ +...++.|.+|+..+.... .....+...+.++++.+++. ++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSSSCEEEEECC-----E--ECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC--CCCEEEEccCCCCcEEEecCCCcccc--eEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCce
Confidence 678899998 888777 5577889999987544322 11123335678899999987 666666 8899999987654
Q ss_pred ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc
Q 013644 138 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 217 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (439)
... +... ....+..++++|++ +++++...++.|.+|+..+..... ........
T Consensus 99 ~~~-~~~~----------~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~ 151 (270)
T 1rwi_B 99 QTV-LPFD----------GLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTV---------------LPFTGLND 151 (270)
T ss_dssp CEE-CCCC----------SCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEE---------------CCCCSCCS
T ss_pred Eee-eecC----------CcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEe---------------eccccCCC
Confidence 321 1110 12347899999987 677777778899999755432100 00112235
Q ss_pred EEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC
Q 013644 218 ITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 296 (439)
Q Consensus 218 i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d 296 (439)
+..++++++|+++++.. ++.|.+|+..... ......... ..+.+++ ++++|.++++...+
T Consensus 152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----------------~~~~~~~~~--~~p~~i~-~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----------------QVVLPFTDI--TAPWGIA-VDEAGTVYVTEHNT 212 (270)
T ss_dssp CCCEEECTTCCEEEEEGGGTEEEEECTTTCC----------------EEECCCSSC--CSEEEEE-ECTTCCEEEEETTT
T ss_pred ceeEEEeCCCCEEEEECCCCEEEEEecCCCc----------------eEeecccCC--CCceEEE-ECCCCCEEEEECCC
Confidence 67899999999777775 7899999986541 111111111 2367888 89999888888788
Q ss_pred CeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 297 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 297 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+.|.+|+............+...+.+++++++|+++++...++.|+++++...+.
T Consensus 213 ~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 213 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 9999999876544333323335789999999999888988999999999876543
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.9e-15 Score=129.17 Aligned_cols=248 Identities=11% Similarity=0.040 Sum_probs=159.1
Q ss_pred CCceEEEEEccCCCcEEEEeCCC------------------------CcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 103 QGRVYKLAVEPGSPYIIYSCGED------------------------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 103 ~~~v~~i~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
-+.+.+++++|+|+ ++++...+ +.|.+||..+++....+... +-.
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----------~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN----------LFY 91 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT----------TCS
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC----------ccC
Confidence 46789999999997 66677666 47999999888765433211 223
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCc-ccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec--
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-- 234 (439)
....++++|++ +++++...++.|++||..... .+..+... ........+......++++| ++.++++.+
T Consensus 92 ~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~------~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 92 LPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRS------MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp SEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBT------TBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred CceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEeccc------CCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 47889999987 688888888999999986532 11110000 00000022344688999999 788888873
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC--------CcceeeeEEeeCCC-CceEEEeCCCCeEEEEecC
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--------NSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKK 305 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 305 (439)
++.|++|+.... ....+.... .......++ ++|+ ++++++...++.|++|+..
T Consensus 165 ~~~I~~~~~~g~-----------------~~~~~~~~g~~~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 165 NSRIVQFSPSGK-----------------FVTQWGEESSGSSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp CCEEEEECTTSC-----------------EEEEECEECCSSSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEcCCCC-----------------EEEEeccCCCCCCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECC
Confidence 889999995432 222222110 112267888 7888 8888888889999999999
Q ss_pred CCceeEeec--ccccceEEEeecCCCcEEEEE-------ecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEE
Q 013644 306 GGKLVRLMV--GDRHVVNQLEPHPHIPMFATC-------GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 376 (439)
Q Consensus 306 ~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~-------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (439)
+++.+..+. .+...+..++++| +..+++. ..+..|++|++.+++.....+.. ........-++
T Consensus 227 ~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-------~~~~~~p~~ia 298 (329)
T 3fvz_A 227 TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-------RKHFDMPHDIV 298 (329)
T ss_dssp TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-------SSCCSSEEEEE
T ss_pred CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-------CCccCCeeEEE
Confidence 899888774 4556788999999 4333333 34458999998877652221100 01112234556
Q ss_pred eCCCcEEEEEEeccccee
Q 013644 377 LTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 377 ~s~dg~v~~w~~~~~~~~ 394 (439)
+++||.+.+-+.......
T Consensus 299 ~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 299 ASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp ECTTSEEEEEESSSCCEE
T ss_pred ECCCCCEEEEECCCCEEE
Confidence 666666666555544443
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=1e-13 Score=121.66 Aligned_cols=284 Identities=8% Similarity=-0.055 Sum_probs=182.1
Q ss_pred EECCCCCEEEEecC--CC---eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec----------CCCcEEE
Q 013644 21 EFNSTGDFLVSGSD--DK---LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS----------ADGQVRL 85 (439)
Q Consensus 21 ~~s~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~i 85 (439)
...|+++++.+... .. .|.++|..+++.+..+-.+ ..+ .++++| ++++++.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC--CCCEEEEEeccccccccCCCCCeEEE
Confidence 44578887777653 22 8899999988766554322 233 899999 999998875 3678999
Q ss_pred EEcccCceeeeEEec--CC---CCceEEEEEccCCCcEEEEeCC-CCcEEEEEccCCCceee-EEeeccCCCCCCCCcee
Q 013644 86 GQIFEDGRMDTKRLG--KH---QGRVYKLAVEPGSPYIIYSCGE-DGFVQHFDLRSDSATRL-FYCSSFSENSKQPMNSI 158 (439)
Q Consensus 86 w~~~~~~~~~~~~~~--~~---~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (439)
||..+.+......+. .. ......++|+|+|++++++... ++.|.++| .+++.... +.. .
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~------------~- 167 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS------------P- 167 (373)
T ss_pred EECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC------------C-
Confidence 999877665433332 00 1234589999999976655433 58899999 98877655 422 1
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC-CEEEEecCCe
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDEL 237 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~d~~ 237 (439)
.++.+.|.+...+++.+.||.+.++|. +++........ ........-.....+.+++ .+++....+.
T Consensus 168 --~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 168 --TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG---------AMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred --ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc---------ccccCCcceeecceeEecCCEEEEEcCCce
Confidence 124455666677788888999999999 76532110000 0000111111234455555 4444445788
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeC--------CCCcceeeeEEeeCCCCceEEEeCC----------CCeE
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--------HRNSQTVKGVNFFGPNDEYVMSGSD----------CGHL 299 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~s~~~~~l~~~~~----------dg~i 299 (439)
+.+.|+...... ....+.. ...+.....+. ++|+++.++.... .+.|
T Consensus 236 v~vid~~~~~~~--------------v~~~~~~~~~~~~~~~~~p~g~~~~~-~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 236 ILQADISAAGAT--------------NKAPIDALSGGRKADTWRPGGWQQVA-YLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred EEEEeccCCcce--------------EeeeeeecCCcccccceecCceEeEE-ECCCCCEEEEEeccCCcccccCCCCeE
Confidence 999998654110 0011110 00011123355 7899887777543 3589
Q ss_pred EEEecCCCceeEeecccccceEEEeecCCCc-EEEEEe-cCCeEEEeccCCCCC
Q 013644 300 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 351 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~ 351 (439)
.++|..+++.+..+.. ......++|+|||+ +++++. .++.|.++|+.+.+.
T Consensus 301 ~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 9999999999888863 33578999999999 777776 589999999988775
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=2.7e-14 Score=123.62 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=169.8
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
....+.+. ++++.++...++.|.+||..+++.+.++ . .......+++++ ++..+++...++.|.+||..+.+...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEE
Confidence 35667774 4556666667799999999998876665 2 346788999988 88555555488999999998876553
Q ss_pred eEEecC---CCCceEEEEEccCCCcEEEEeC-CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 96 TKRLGK---HQGRVYKLAVEPGSPYIIYSCG-EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 96 ~~~~~~---~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
...... .......+++ . +..++++.. .++.|.++|+.+++....+... .....++++|++ +
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------------~~p~~i~~~~dG-~ 184 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG------------IQPTSLVMDKYN-K 184 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS------------SCBCCCEECTTS-E
T ss_pred EEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------------CCccceEEcCCC-C
Confidence 333222 1114556777 3 444665554 4889999999998877666431 124568889987 6
Q ss_pred EEEEeecC----------ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEE
Q 013644 172 YFAVGGSD----------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 241 (439)
Q Consensus 172 ~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~ 241 (439)
+++++..+ +.|.++|..+++.... +..........++++|+++.|.++.. .|.+|
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--------------~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~ 249 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--------------FKFKLGDWPSEVQLNGTRDTLYWINN-DIWRM 249 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE--------------EECCTTCCCEEEEECTTSCEEEEESS-SEEEE
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEE--------------EecCCCCCceeEEEecCCCEEEEEcc-EEEEE
Confidence 66666554 7899999987653211 10111235789999999988887755 89999
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEe----CCCCeEEEEecCCCceeEeeccc
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSG----SDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
|..++... ....+... ......++ ++| ++++.++. ..++.|.+||.. ++.+..+..
T Consensus 250 d~~t~~~~--------------~~~~~~~~--~~~p~gi~-vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~- 310 (328)
T 3dsm_A 250 PVEADRVP--------------VRPFLEFR--DTKYYGLT-VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV- 310 (328)
T ss_dssp ETTCSSCC--------------SSCSBCCC--SSCEEEEE-ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-
T ss_pred ECCCCcee--------------eeeeecCC--CCceEEEE-EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-
Confidence 98776210 00011111 12367788 898 55666666 568999999998 888887763
Q ss_pred ccceEEEee
Q 013644 317 RHVVNQLEP 325 (439)
Q Consensus 317 ~~~v~~~~~ 325 (439)
......++|
T Consensus 311 G~~P~~~~~ 319 (328)
T 3dsm_A 311 GIIPGAFCW 319 (328)
T ss_dssp EESEEEEEE
T ss_pred ccCcceEEE
Confidence 223355555
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=2.2e-14 Score=120.89 Aligned_cols=241 Identities=10% Similarity=0.002 Sum_probs=162.1
Q ss_pred ceEEEEECCCCCEEE-EecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee
Q 013644 16 CVNAVEFNSTGDFLV-SGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 94 (439)
...+++++++|++++ +...++.|.+|+..+...... ...+...+.++++.+ ++.++++.. ++.|.+|+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 557788999999766543221 123335678899998 888666666 889999998654332
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
. ........+..+++.+++. ++++...++.|.+|+..+........ . ....+.+++++|++ ++++
T Consensus 101 -~-~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~----~-------~~~~p~~i~~~~~g-~l~v 165 (270)
T 1rwi_B 101 -V-LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPF----T-------GLNDPDGVAVDNSG-NVYV 165 (270)
T ss_dssp -E-CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCC----C-------SCCSCCCEEECTTC-CEEE
T ss_pred -e-eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeecc----c-------cCCCceeEEEeCCC-CEEE
Confidence 1 1112335789999999987 67677778899999755443221110 0 12246789999987 6777
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCC
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLS 253 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 253 (439)
+...++.|.+||........ ........+..++++++|.++++.. ++.|.+|+.....
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~------ 224 (270)
T 1rwi_B 166 TDTDNNRVVKLEAESNNQVV---------------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------ 224 (270)
T ss_dssp EEGGGTEEEEECTTTCCEEE---------------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC------
T ss_pred EECCCCEEEEEecCCCceEe---------------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc------
Confidence 77778899999987643211 0012225678999999998777775 8899999986531
Q ss_pred CCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce
Q 013644 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 309 (439)
...... .....+.+++ ++++|+++++...++.|+++++...+.
T Consensus 225 -----------~~~~~~-~~~~~p~~i~-~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 225 -----------STVLPF-TGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -----------CEECCC-CSCSCEEEEE-ECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -----------ceeecc-CCCCCceeEE-ECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 111111 1112377888 899999888888999999999876544
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=4.2e-14 Score=118.73 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=157.7
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCC-CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ-GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 148 (439)
.+++|++++.++.|.+||.++++.+.. +..+. ..+.++.++|+|+ +++ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~--- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--YPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAP--- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--EECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECC---
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--eCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCC---
Confidence 578999999999999999988887643 44443 4688999999997 565 34778999998 78877766541
Q ss_pred CCCCCCCceeeeEEEeecCCCCcEEEEeec-CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 013644 149 ENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 227 (439)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (439)
....+.++.+.|++ +++++.+. ++.+..+|. .++.+........ ...+......+++.++|
T Consensus 75 -------~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~---------~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 75 -------AGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETG---------IERPHAQFRQINKNKKG 136 (276)
T ss_dssp -------TTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCS---------CSSGGGSCSCCEECTTS
T ss_pred -------CCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCC---------CCcccccccCceECCCC
Confidence 12357788999987 77777776 778888886 4443322111100 01111234455788999
Q ss_pred CEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC
Q 013644 228 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 228 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
.++++.. ++.|..||.. + +.+..+..... ..++. ..++|++++++..++.|..+|..+
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G----------------~~~w~~~~~~~---~~~~~-~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-G----------------QLLNSVKLSGT---PFSSA-FLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp CEEEEETTTTEEEEECTT-S----------------CEEEEEECSSC---CCEEE-ECTTSCEEEECBTTSEEEEECTTT
T ss_pred CEEEEecCCCEEEEECCC-C----------------CEEEEEECCCC---cccee-EcCCCCEEEEeCCCCeEEEEeCcC
Confidence 9998886 8999999987 5 45555554422 44455 678999999999889999999999
Q ss_pred CceeEeecccc------cceEEEeecCCCcEEEEEe
Q 013644 307 GKLVRLMVGDR------HVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 307 ~~~~~~~~~h~------~~v~~~~~s~~~~~l~s~~ 336 (439)
|+.+..+..+. ..+..++..++|.++++..
T Consensus 196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99998886432 2378888899999888774
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=2.2e-14 Score=137.58 Aligned_cols=282 Identities=7% Similarity=-0.059 Sum_probs=166.7
Q ss_pred CCcEEEEecCCC---cEEEEEcc--cCceeeeEEe----cCCCCceEEEEEccCCCcEEEEe----CCCCcEEEEEccCC
Q 013644 70 DDRKIITSSADG---QVRLGQIF--EDGRMDTKRL----GKHQGRVYKLAVEPGSPYIIYSC----GEDGFVQHFDLRSD 136 (439)
Q Consensus 70 ~~~~l~s~~~dg---~i~iw~~~--~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~s~----~~dg~i~iwd~~~~ 136 (439)
+|++++....++ .-.+|... .+........ .+|...+..++|+|||++++++. +.+..|++||+.++
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 888887665543 34555543 3332211111 23555789999999999655443 34568999999998
Q ss_pred CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce-------------EEEEeCcCCcccCCCCCCCCcc
Q 013644 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY-------------ARVYDIRKCHWYSPISSDTPVD 203 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~ 203 (439)
+...... . .......++|+|++ +.|+.++.+.. |++|++.++....
T Consensus 158 ~~~~~~~---~--------~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~--------- 216 (695)
T 2bkl_A 158 EWSKVDV---I--------EGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD--------- 216 (695)
T ss_dssp CBCSSCC---B--------SCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC---------
T ss_pred CCcCCcc---c--------CcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc---------
Confidence 7641100 0 01112578999998 67777776654 9999998754110
Q ss_pred cccccccccCCCccEEEEEEccCCCEEEEec-CC----eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceee
Q 013644 204 TFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 278 (439)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (439)
........+...+..+.|+|+|++|+... ++ .|++++..++ ....+..+... +.
T Consensus 217 --~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----------------~~~~l~~~~~~--~~ 275 (695)
T 2bkl_A 217 --TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----------------DFRLLVKGVGA--KY 275 (695)
T ss_dssp --EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----------------SCEEEEECSSC--CE
T ss_pred --eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----------------ceEEeecCCCc--eE
Confidence 00111123445788999999999887664 44 5666654332 23344444332 34
Q ss_pred eEEeeCCCCceEEEeC---CCCeEEEEecCCCce---eEeeccc-ccceEEEeecCCCcEEEEEecCCeEEEeccC--CC
Q 013644 279 GVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKL---VRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PT 349 (439)
Q Consensus 279 ~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~ 349 (439)
... + ++|++++... .++.|.+|++.+++. ...+..+ ...+..++|+ ++.++++...|+..+||.+. ++
T Consensus 276 ~~~-~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 276 EVH-A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEE-E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEE-e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 444 3 5666444444 258999999987753 3333333 4568889998 67889999999998888654 33
Q ss_pred CCCCCCCc-hhhhhhhhccccCcc-eEEEe---CCCcEEEEEEecccceeeee
Q 013644 350 DFPPLPDN-AEKIMKANKQGREDH-SRITL---TPDVIMHVLRLQRRQTLAYR 397 (439)
Q Consensus 350 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~---s~dg~v~~w~~~~~~~~~~~ 397 (439)
....+..+ ...+.... ...++. ..+++ ...+++.+|++.+++...+.
T Consensus 353 ~~~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLM-GLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEECCCSSSSEECCCB-SCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred eeEEecCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 23223222 22232222 222333 33333 34578999999887755443
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=1.3e-13 Score=119.02 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=157.8
Q ss_pred eeccccceEEEEECCCCCEEEE-------ecCCCeEEEEeCCCCcceeeee---cCCcccEEEEEEeecCC-CcEEEEec
Q 013644 10 LHGHKGCVNAVEFNSTGDFLVS-------GSDDKLVIFWDWKDRREKFSYL---SGHLDNIFQTRIMPFTD-DRKIITSS 78 (439)
Q Consensus 10 l~~h~~~I~~~~~s~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~-~~~l~s~~ 78 (439)
+...-....+++|+++|+++++ +..++.|.+|+..+++...... .++...+..+++.+ + +.++++..
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADM 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEET
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEEC
Confidence 3444556789999999988887 5678899999987765432211 12456789999998 8 66555544
Q ss_pred CCCcEEEEEcccCceeee-EEe-c-CCCCceEEEEEccCCCcEEEEeCCC---------------CcEEEEEccCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDT-KRL-G-KHQGRVYKLAVEPGSPYIIYSCGED---------------GFVQHFDLRSDSATR 140 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~-~~~-~-~~~~~v~~i~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~ 140 (439)
.+.|.+|+.. ++.... ... . .....+.++++++++. ++++...+ +.|..|+.. ++...
T Consensus 91 -~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 91 -RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp -TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred -CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 4478899987 443211 110 0 1124588999999997 55555444 456666654 33322
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeec----CCCCcEEEEeecCceEEEEeCcC-CcccCCCCCCCCcccccccccccCCC
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVID----PRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
... +......++++ |++..++++...++.|.+||+.. ++
T Consensus 167 ~~~------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~------------------------ 210 (314)
T 1pjx_A 167 VDT------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK------------------------ 210 (314)
T ss_dssp EEE------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE------------------------
T ss_pred ecc------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc------------------------
Confidence 211 11224567777 76533344444566777777541 11
Q ss_pred ccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC
Q 013644 216 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 295 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~ 295 (439)
+... .....+..+. ...+..++ ++++|++.++...
T Consensus 211 --~~~~-----------------------------------------~~~~~~~~~~-~~~p~~i~-~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 211 --IENK-----------------------------------------KVWGHIPGTH-EGGADGMD-FDEDNNLLVANWG 245 (314)
T ss_dssp --EEEE-----------------------------------------EEEEECCCCS-SCEEEEEE-EBTTCCEEEEEET
T ss_pred --cccc-----------------------------------------eEEEECCCCC-CCCCCceE-ECCCCCEEEEEcC
Confidence 0000 0001111111 01256677 7899998888777
Q ss_pred CCeEEEEecCCCceeEeecccccceEEEeecCCCc-EEEEEecCCeEEEeccCC
Q 013644 296 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 348 (439)
++.|.+||..+++.+..+..+...+.+++++|+++ ++++...++.|..|++..
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999987887777776667899999999999 445555678999999864
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=3.5e-14 Score=137.08 Aligned_cols=286 Identities=10% Similarity=-0.014 Sum_probs=168.9
Q ss_pred CCCCCEEEEecCCC---eEEEEeCCC----Ccceeee------ecCCcccEEEEEEeecCCCcEEEEecCC-----CcEE
Q 013644 23 NSTGDFLVSGSDDK---LVIFWDWKD----RREKFSY------LSGHLDNIFQTRIMPFTDDRKIITSSAD-----GQVR 84 (439)
Q Consensus 23 s~~~~~l~t~~~dg---~i~iw~~~~----~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~ 84 (439)
+|+|++++....++ .-.+|.... +.....+ ..+|...+..++|+| ||++|+.++.+ .+|+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP--DG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASD--DGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECT--TSSEEEEEEEETTCSEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECC--CCCEEEEEEcCCCCceEEEE
Confidence 38999888765433 245555432 2222221 123445788999999 99999877543 4699
Q ss_pred EEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC-------------cEEEEEccCCCceeeEEeeccCCCC
Q 013644 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG-------------FVQHFDLRSDSATRLFYCSSFSENS 151 (439)
Q Consensus 85 iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-------------~i~iwd~~~~~~~~~~~~~~~~~~~ 151 (439)
+||+.+++.... .+ +...+..++|+|+ +.++++..... .|++|++.++.....+.... .
T Consensus 193 v~dl~tg~~~~~-~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~--- 264 (741)
T 1yr2_A 193 FVGVADGKPLAD-EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-P--- 264 (741)
T ss_dssp EEETTTCCEEEE-EE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-T---
T ss_pred EEECCCCCCCCc-cC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-C---
Confidence 999988876432 11 1122357899999 86665543222 38899988776432221111 0
Q ss_pred CCCCceeeeEEEeecCCCCcEEEEeecC-----ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 013644 152 KQPMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 226 (439)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 226 (439)
.+...+..+.|+|+| ++|+..+.+ ..|++||+.++... +...+ ..+....... ++|+
T Consensus 265 ---~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~------------~~~~l-~~~~~~~~~~-~~~d 326 (741)
T 1yr2_A 265 ---ELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG------------PVTAL-IPDLKAQWDF-VDGV 326 (741)
T ss_dssp ---TCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC------------CCEEE-ECSSSSCEEE-EEEE
T ss_pred ---CCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc------------ccEEe-cCCCCceEEE-Eecc
Confidence 022247789999998 566655543 38999998765200 01111 1122223333 3478
Q ss_pred CCEEEEec-----CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 227 SELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 227 ~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
|+.|+..+ +..|.+|++.++. .....+..+... .+..+. ++ ++.++++...|+..+|
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~~~---------------~~~~~l~~~~~~-~l~~~~-~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSGST---------------PRFDTVVPESKD-NLESVG-IA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSSSS---------------CEEEEEECCCSS-EEEEEE-EE-BTEEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCc---------------cccEEEecCCCC-eEEEEE-EE-CCEEEEEEEECCEEEE
Confidence 87666553 3469999986530 011222222222 366666 44 6678888888888777
Q ss_pred EecC-CCceeEeeccc-ccceEEEeecCCCcEEE-EE---ecCCeEEEeccCCCCCCCC
Q 013644 302 WKKK-GGKLVRLMVGD-RHVVNQLEPHPHIPMFA-TC---GIEKTVKLWAPMPTDFPPL 354 (439)
Q Consensus 302 wd~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~-s~---~~dg~i~iw~~~~~~~~~~ 354 (439)
|.+. +++....+..+ ...+..+.++|+++.|+ +. ...++|.+||+.+++...+
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 7554 45666666543 56788999999988555 22 2357899999987664333
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=3.6e-13 Score=113.08 Aligned_cols=243 Identities=8% Similarity=0.007 Sum_probs=162.4
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCCc-ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCC-
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL-DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKH- 102 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~- 102 (439)
.+++|++++.++.|.+||.++++.+.++ ..+. ..+.++.++| ++++|++ .++.|..||. +++.+.. +..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~p--dG~ilvs--~~~~V~~~d~-~G~~~W~--~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATK--AGEILFS--YSKGAKMITR-DGRELWN--IAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECT--TSCEEEE--CBSEEEEECT-TSCEEEE--EECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECC--CCCEEEe--CCCCEEEECC-CCCEEEE--EcCCC
Confidence 4678999999999999999899877665 3443 4688899999 9998883 4778999998 6766543 3333
Q ss_pred CCceEEEEEccCCCcEEEEeCC-CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce
Q 013644 103 QGRVYKLAVEPGSPYIIYSCGE-DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY 181 (439)
Q Consensus 103 ~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 181 (439)
...+.++.+.++|+. +++.+. ++.|..+|. +++.+..+....... .+......+.+.+++ +++++...++.
T Consensus 76 ~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~-----~~~~~~~~v~~~~~G-~~lv~~~~~~~ 147 (276)
T 3no2_A 76 GCEMQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFETGIE-----RPHAQFRQINKNKKG-NYLVPLFATSE 147 (276)
T ss_dssp TCEEEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECCSCS-----SGGGSCSCCEECTTS-CEEEEETTTTE
T ss_pred CccccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccCCCC-----cccccccCceECCCC-CEEEEecCCCE
Confidence 357889999999984 555555 777877775 566665554321100 011223445677876 79999999999
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
|..||.. ++.+.... . ...+..+...++|.+++++. ++.|..+|..++
T Consensus 148 v~~~d~~-G~~~w~~~---------------~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-------------- 196 (276)
T 3no2_A 148 VREIAPN-GQLLNSVK---------------L-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-------------- 196 (276)
T ss_dssp EEEECTT-SCEEEEEE---------------C-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTC--------------
T ss_pred EEEECCC-CCEEEEEE---------------C-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC--------------
Confidence 9999988 66432211 1 12345577789999888876 668999998876
Q ss_pred ccccceeEeCCC----CcceeeeEEeeCCCCceEEEeCCC--------CeEEEEec-CCCceeEeecccc
Q 013644 261 KREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKK-KGGKLVRLMVGDR 317 (439)
Q Consensus 261 ~~~~~~~~~~~~----~~~~v~~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~h~ 317 (439)
+.+..+.... ....+..+. ..++|+++++.... +..+++++ .+++.+.++..+.
T Consensus 197 --~~~w~~~~~~~~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 197 --RIVRRVNANDIEGVQLFFVAQLF-PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp --CEEEEEEGGGSBSCCCSEEEEEE-ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred --cEEEEecCCCCCCccccccccce-EcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcc
Confidence 3444443221 112356666 67888888776321 23345554 4677776665443
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=7.9e-14 Score=134.63 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=151.3
Q ss_pred cccceEEEEECCCCCEEEEecCC-----CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCc-----
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDD-----KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQ----- 82 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~----- 82 (439)
|...+..++|||||++||.++.+ ..|++||+.+++.+.... +...+..++|+| | +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wsp--D-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLG--N-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEEST--T-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEEC--C-CEEEEEEecCcccccc
Confidence 44578899999999999887543 469999999987643321 222235789999 9 88888776554
Q ss_pred ---------EEEEEcccCcee--eeEEecCCCCceEEEEEccCCCcEEEEeCC----CCcEEEEEccCC--CceeeEEee
Q 013644 83 ---------VRLGQIFEDGRM--DTKRLGKHQGRVYKLAVEPGSPYIIYSCGE----DGFVQHFDLRSD--SATRLFYCS 145 (439)
Q Consensus 83 ---------i~iw~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~~ 145 (439)
|.+|++.++... .......+...+..+.|+|+|++++++... ...|++||+.++ +....+...
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 889998766532 222222333458899999999976655532 348999999877 312333221
Q ss_pred ccCCCCCCCCceeeeEEEeecCCCCcEEEEeec----CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEE
Q 013644 146 SFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
........ .|++ ..|+..+. ++.|.+||+.++. . ....+...+...+..+
T Consensus 316 -----------~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~--~-----------~~~~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 316 -----------LKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGST--P-----------RFDTVVPESKDNLESV 369 (741)
T ss_dssp -----------SSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSS--C-----------EEEEEECCCSSEEEEE
T ss_pred -----------CCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCc--c-----------ccEEEecCCCCeEEEE
Confidence 11122332 3766 45554443 4569999987631 0 1112223334456677
Q ss_pred EEccCCCEEEEec-CCeEEEEEccC-CCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEE----EeCC
Q 013644 222 AYSNTSELLISYN-DELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM----SGSD 295 (439)
Q Consensus 222 ~~~~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~----~~~~ 295 (439)
.+. ++.++++.. ++..++|.+.. + .....+..+. ...+..+. ++|+++.|+ +...
T Consensus 370 ~~~-~~~lv~~~~~dg~~~l~~~~~~g----------------~~~~~l~~~~-~~~v~~~~-~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 370 GIA-GNRLFASYIHDAKSQVLAFDLDG----------------KPAGAVSLPG-IGSASGLS-GRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp EEE-BTEEEEEEEETTEEEEEEEETTS----------------CEEEECBCSS-SCEEEEEE-CCBTCSCEEEEEEETTE
T ss_pred EEE-CCEEEEEEEECCEEEEEEEeCCC----------------CceeeccCCC-CeEEEEee-cCCCCCEEEEEEcCCCC
Confidence 777 556666665 77766665542 2 1223333221 22477777 788888666 3334
Q ss_pred CCeEEEEecCCCce
Q 013644 296 CGHLFIWKKKGGKL 309 (439)
Q Consensus 296 dg~i~iwd~~~~~~ 309 (439)
.++|++||+.+++.
T Consensus 431 P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 431 PATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEEETTTTEE
T ss_pred CCEEEEEECCCCcE
Confidence 58999999988763
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=6.5e-12 Score=107.44 Aligned_cols=240 Identities=8% Similarity=0.004 Sum_probs=166.0
Q ss_pred CcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC
Q 013644 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS 135 (439)
Q Consensus 56 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 135 (439)
....+.++++.+ ++.+.++...++.|.+|+.. ++.. ...+......+..+++.+++. ++++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSE--DGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECC--CCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-
Confidence 345788999998 88888887778999999986 4432 233444446789999999987 66676668889999987
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
++.. .+.... ....+.++++.+++ +++++...++.|..||.. ++... + ......
T Consensus 92 g~~~-~~~~~~---------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~----------~----~~~~~~ 145 (300)
T 2qc5_A 92 GGFT-EYPLPQ---------PDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYE----------Y----DLPNKG 145 (300)
T ss_dssp SCEE-EEECSS---------TTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEE----------E----ECSSTT
T ss_pred CCeE-EecCCC---------CCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEE----------c----cCCCCC
Confidence 5432 222110 12347889999876 677776667899999976 43210 0 012234
Q ss_pred ccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC
Q 013644 216 IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~ 294 (439)
..+..+++.++++++++.. ++.|..++. .+ ....+........+.+++ ++++|++.++..
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-----------------~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~ 206 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITN-TG-----------------KLEEYPLPTNAAAPVGIT-SGNDGALWFVEI 206 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TC-----------------CEEEEECSSTTCCEEEEE-ECTTSSEEEEET
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECC-CC-----------------cEEEeeCCCCCCCcceEE-ECCCCCEEEEcc
Confidence 5688999999999777765 788999987 33 111222111122377888 788998888777
Q ss_pred CCCeEEEEecCCCceeEe-ecccccceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 295 DCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 295 ~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
..+.|.+|+. +++.... +..+...+.+++++++|++.++...++.|..|+..
T Consensus 207 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 207 MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 7789999998 4554332 33344678899999999977777667899999984
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=4.7e-12 Score=111.03 Aligned_cols=268 Identities=13% Similarity=0.019 Sum_probs=168.4
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEec----------CCCeEEEEeCCCCcceeeeecC------CcccEEEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGS----------DDKLVIFWDWKDRREKFSYLSG------HLDNIFQTRIM 66 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~------h~~~v~~~~~~ 66 (439)
+.+++.++..-..+ .++++|||++|+.+. .++.|.+||..+.+.+..+..+ +......+.|+
T Consensus 56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence 34455566544444 899999999998875 3678999999887665544222 01234578999
Q ss_pred ecCCCcEEEEecC--CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 67 PFTDDRKIITSSA--DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 67 ~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
| ++++|+++.. ++.|.++| .+++.... .+. ... ++.+.|+++..+++.+.||.+.++|. +++.......
T Consensus 134 p--DG~~l~v~n~~~~~~v~viD-~t~~~~~~-~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~ 204 (373)
T 2mad_H 134 P--NNADLLFFQFAAGPAVGLVV-QGGSSDDQ-LLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV 204 (373)
T ss_pred C--CCCEEEEEecCCCCeEEEEE-CCCCEEeE-EcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence 9 9999998864 57899999 87765422 022 111 35567777767778889999999999 7776533221
Q ss_pred eccCCCCCCCCceee-eEEEeecCCCCcEEEEeecCceEEEEeCcCCccc--CCCCCCCCcccccccccccCCCccEEEE
Q 013644 145 SSFSENSKQPMNSIR-LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--SPISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
..... ...+ .....+.++++.++++. ..+.+.+.|+...... ..+..... .. ............+
T Consensus 205 ~~~~~------~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~----~~-~~~~~~p~g~~~~ 272 (373)
T 2mad_H 205 GAMLT------AAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSG----GR-KADTWRPGGWQQV 272 (373)
T ss_pred ccccc------CCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCC----cc-cccceecCceEeE
Confidence 00000 0111 22345566654445444 6789999998754311 00000000 00 0000112234457
Q ss_pred EEccCCCEEEEec-----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-e
Q 013644 222 AYSNTSELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-Y 289 (439)
Q Consensus 222 ~~~~~~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~ 289 (439)
.++|+++.+.+.. .+.|.++|+.+. +....+.... ...++. ++|||+ +
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~----------------~vv~~i~~g~---~p~~i~-~s~Dg~~~ 332 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----------------QTSSQISLGH---DVDAIS-VAQDGGPD 332 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC----------------EEEEEEECCC---CcCeEE-ECCCCCeE
Confidence 8899987766643 257999998876 4445554333 267777 899999 7
Q ss_pred EEEeC-CCCeEEEEecCCCceeEee
Q 013644 290 VMSGS-DCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 290 l~~~~-~dg~i~iwd~~~~~~~~~~ 313 (439)
++++. .++.|.++|+.+++.+..+
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEeee
Confidence 77776 4899999999999998774
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=1.3e-13 Score=120.32 Aligned_cols=287 Identities=9% Similarity=0.051 Sum_probs=173.1
Q ss_pred cceeeeeeccccceEEEEECCCCCEEEEec--CCCeEEEEeCCCCcceeee------ecCCcccEEEEEEeecCCCcEEE
Q 013644 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGS--DDKLVIFWDWKDRREKFSY------LSGHLDNIFQTRIMPFTDDRKII 75 (439)
Q Consensus 4 ~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~ 75 (439)
++++..+. ..+..++++|+|+++++.. .++.++||.+.+++ +..+ ...|...+..+++.+ ++.+++
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v 82 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDG--NGIVWM 82 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECS--SSEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcC--CCcEEE
Confidence 34444443 6789999999999998864 23435666655432 2211 123556899999998 887666
Q ss_pred EecC-----CCcEEEEEcccCceeeeEEec----CCCCceEEEEEccCCCcEEEEeC---CCCcEEEEEccCCCceeeEE
Q 013644 76 TSSA-----DGQVRLGQIFEDGRMDTKRLG----KHQGRVYKLAVEPGSPYIIYSCG---EDGFVQHFDLRSDSATRLFY 143 (439)
Q Consensus 76 s~~~-----dg~i~iw~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~ 143 (439)
+-.. ++.|.+||+.+++......+. .+...+..+++++++..++++.. .++.|.+||+.+++..+.+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 5433 578999999877655433332 12345689999987655666665 67899999998887554432
Q ss_pred eeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEE
Q 013644 144 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 223 (439)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 223 (439)
..... .... ..+.+++ ..+.+...++.++.|. ..+..+++
T Consensus 163 ~~~~~-------~~~~---~~~~~~g-~~~~~~~~~g~~~~~~-----------------------------~~~~gia~ 202 (343)
T 2qe8_A 163 GYPGI-------APED---IDLVIDG-VPVQIGQPDGTVIRPH-----------------------------LGVNGIVL 202 (343)
T ss_dssp TCTTT-------SCCS---CCCEETT-EECBEECTTSCEECCC-----------------------------CCEEEEEE
T ss_pred CCCcc-------cccc---cceeECC-EEEEeccCCCceecee-----------------------------cccceeEe
Confidence 10000 0000 2223333 4555555666554432 12578999
Q ss_pred ccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 224 SNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 224 ~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
+|+++.|+.+. ...++.++........ +.... ..... ...++.. ....++ ++++|+++++...++.|.+
T Consensus 203 s~dg~~ly~~~~~~~~l~~~~~~~~~~~~---~~~~~--~~~~~-~~~g~~g--~pdgia-~d~~G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 203 DAENEWLYLSPMHSTSMYRIKSADLSNLQ---LTDAE--LGSKI-ERYSEKP--ICDGIS-IDKDHNIYVGDLAHSAIGV 273 (343)
T ss_dssp CTTSCEEEEEESSCSEEEEEEHHHHTCTT---CCHHH--HHTTC-EEEEECC--SCSCEE-ECTTCCEEEEEGGGTEEEE
T ss_pred ccCCCEEEEEeCCCCeEEEEEHHHhcCCC---CChhh--hhcce-EecccCC--CCceEE-ECCCCCEEEEccCCCeEEE
Confidence 99998877775 3466666543110000 00000 00001 1112221 255677 8999999999999999999
Q ss_pred EecCCCceeEeeccc-ccceEEEeecCCCcEEEEEecCCeEEEec
Q 013644 302 WKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWA 345 (439)
Q Consensus 302 wd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 345 (439)
||.++++........ ...+.+++|.++++++++.+..+.+.+|.
T Consensus 274 ~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 274 ITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 998567654333322 34688999999998888876555544444
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=7.7e-13 Score=114.30 Aligned_cols=280 Identities=11% Similarity=0.089 Sum_probs=172.9
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEec----------CCCeEEEEeCCCCcceeeeecCC------cccEEEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGS----------DDKLVIFWDWKDRREKFSYLSGH------LDNIFQTRIM 66 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~h------~~~v~~~~~~ 66 (439)
+++++.++..-..+ . ++++|||+++++++ .++.|.+||..+.+.+..+..+. ......+.|+
T Consensus 68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 45667777655555 4 99999999887765 35789999999988766553221 1234568999
Q ss_pred ecCCCcEEEEecC--CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-CCceeeEE
Q 013644 67 PFTDDRKIITSSA--DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSATRLFY 143 (439)
Q Consensus 67 ~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 143 (439)
| ||++|+++.. ++.|.++|+.+.+.+....+.+ +....|.+...+++.+.||.+.+.++.. ++.....
T Consensus 146 p--DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~- 216 (386)
T 3sjl_D 146 P--DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH- 216 (386)
T ss_dssp T--TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-
T ss_pred C--CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-
Confidence 9 9999888764 6899999999887765433322 1223355544566778899999999876 5542211
Q ss_pred eeccCCCCCCCCceeee-EEEeec-CCCCcEEEEeecCceEEEEeCcCCcc--cCCCCCCCCccccccccc-ccCCCccE
Q 013644 144 CSSFSENSKQPMNSIRL-NAIVID-PRNPNYFAVGGSDEYARVYDIRKCHW--YSPISSDTPVDTFCPRHL-IGKNNIHI 218 (439)
Q Consensus 144 ~~~~~~~~~~~~~~~~v-~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i 218 (439)
...+.. ....+ ....|. +++ ++++ .+.+|.+++.|+.+... ...... +..... ..-.....
T Consensus 217 ~~~~~~------~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~------~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 217 TEVFHP------EDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEA------LTEAERADGWRPGGW 282 (386)
T ss_dssp CCCCSC------TTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEES------SCHHHHHTTEEECSS
T ss_pred cceecc------ccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceec------cccccccccccCCCc
Confidence 111110 01111 123453 444 4444 45579999999976531 111000 000000 00011223
Q ss_pred EEEEEccCCCEEEEec-----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 219 TGLAYSNTSELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
..++++++++.+.... .+.|.++|+.+. +.+..+.... .+.++. +++|+
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~----------------kv~~~i~vg~---~~~~la-vs~D~ 342 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG----------------ERLAKFEMGH---EIDSIN-VSQDE 342 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC----------------CEEEEEEEEE---EECEEE-ECSSS
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC----------------eEEEEEECCC---CcceEE-ECCCC
Confidence 3567788887766652 257999999877 4444444322 377888 89999
Q ss_pred c-eEEEe-CCCCeEEEEecCCCceeEeecccccceEEEeecCC
Q 013644 288 E-YVMSG-SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 288 ~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 328 (439)
+ +|++. ..++.|.++|..+++.+..+..- +.-+.|.+++|
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 7 56554 55899999999999999888643 23345666665
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=3.9e-13 Score=118.39 Aligned_cols=287 Identities=10% Similarity=0.044 Sum_probs=180.7
Q ss_pred CCCCEEEEecC-C----CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec----------CCCcEEEEEc
Q 013644 24 STGDFLVSGSD-D----KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS----------ADGQVRLGQI 88 (439)
Q Consensus 24 ~~~~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iw~~ 88 (439)
++++.+++... + +.|.++|..+.+.+.++-.+. .+ .+.++| ++++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46666555443 2 699999999998777664443 34 799999 999888775 3678999999
Q ss_pred ccCceeeeEEecCC-----CCceEEEEEccCCCcEEEEeCC-CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEE
Q 013644 89 FEDGRMDTKRLGKH-----QGRVYKLAVEPGSPYIIYSCGE-DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA 162 (439)
Q Consensus 89 ~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (439)
.+.+......+.+. ......++|+|++++++++... ++.|.+.|+.+++.+..+.... +
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---------------~ 221 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---------------C 221 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---------------E
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---------------c
Confidence 88877644434311 1234678999999976655433 6889999999998877765311 1
Q ss_pred EeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc-EEEEEEccCCCEEEEe-cCCeEEE
Q 013644 163 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-ITGLAYSNTSELLISY-NDELVYL 240 (439)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~-~d~~i~i 240 (439)
....|++...+++.+.||.+.+.+...++...... ..+.....+ ...+.+.+++..++.. ..+.+.+
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~V 290 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQ 290 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEE
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEE
Confidence 22334444566677778888877775444221000 000000111 1134678887655444 4789999
Q ss_pred EEccCCCCCCCCCCCcccccc--cccceeEeCCCCcceeeeEEeeCCCCceEEEeCC----------CCeEEEEecCCCc
Q 013644 241 FEKNMGLGPSPLSLSPEDLQK--REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------CGHLFIWKKKGGK 308 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~ 308 (439)
.|.......... ...... ......... ....+. ++|+++.+++... .+.|.++|..+.+
T Consensus 291 iD~~~~~~~v~~---~~~~~~~~~i~~g~~p~-----g~~~va-~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 291 ADLTAEGATFRA---PIEALTEAERADDWRPG-----GWQQTA-YHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EEECSSCEEECC---CEESSCTTTGGGTEEEC-----SSSCEE-EEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeccCCceEEee---eeeeccccccccccccC-----CceeeE-EcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 998654100000 000000 000000000 012245 7889887666532 3579999999999
Q ss_pred eeEeecccccceEEEeecCCCc-EEEEEe-cCCeEEEeccCCCCC
Q 013644 309 LVRLMVGDRHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 351 (439)
Q Consensus 309 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~ 351 (439)
.+..+... .....++|+||++ +++++. .++.|.++|+.+.+.
T Consensus 362 vv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 362 RINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 99888643 3578999999999 888877 589999999988775
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=9.6e-12 Score=106.08 Aligned_cols=241 Identities=9% Similarity=0.041 Sum_probs=148.7
Q ss_pred eeeeccccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
..+..+..---+..|+|+ +.++++...++.|..||..++... .+ .....+.++++.| +++++++. ++.|.+|
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~--dG~l~v~~--~~~l~~~ 78 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQ--SGGYVATI--GTKFCAL 78 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBT--TSSEEEEE--TTEEEEE
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECC--CCCEEEEE--CCeEEEE
Confidence 334445555678899995 566777777899999999876542 22 2346789999999 88865554 5689999
Q ss_pred EcccCceeeeEEecC--CCCceEEEEEccCCCcEEEEeCC---------CCcEEEEEccCCCceeeEEeeccCCCCCCCC
Q 013644 87 QIFEDGRMDTKRLGK--HQGRVYKLAVEPGSPYIIYSCGE---------DGFVQHFDLRSDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
|..+++......... ....++.++++|+|+ ++++... ...-.+|.+........+..
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------- 146 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----------- 146 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------
Confidence 987765433222211 234578999999998 4544321 12234444432221111111
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCc--CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
.....+.++|+|++..++++.+.++.|.+|++. ++. +..-
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~--------------------------~~~~------------ 188 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ--------------------------ISNR------------ 188 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC--------------------------EEEE------------
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc--------------------------ccCc------------
Confidence 112245677777664444555556667777653 111 0000
Q ss_pred cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 234 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 234 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
+....+... ......++ ++++|++.++....+.|.+||..+++.+..+
T Consensus 189 -----------------------------~~~~~~~~~--~~~p~g~~-~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 189 -----------------------------RSVYKLEKE--EQIPDGMC-IDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp -----------------------------EEEEECCGG--GCEEEEEE-EBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred -----------------------------EEEEECCCC--CCCCCeeE-ECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 000011111 11356777 7899988888777889999999999999888
Q ss_pred cccccceEEEeec-CCCcEEEEEec
Q 013644 314 VGDRHVVNQLEPH-PHIPMFATCGI 337 (439)
Q Consensus 314 ~~h~~~v~~~~~s-~~~~~l~s~~~ 337 (439)
..+...+++++|. |+++.|+.++.
T Consensus 237 ~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8777789999998 88876655543
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.59 E-value=4.5e-12 Score=112.79 Aligned_cols=258 Identities=10% Similarity=0.086 Sum_probs=162.9
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC--cEEEEEcccCc
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG--QVRLGQIFEDG 92 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~ 92 (439)
.....|+|+++|+++++...++.|++||..++... .+.... .... ++|+| +++.|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-~~~~~~-~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-TVHPGF-KGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-EEEETC-CBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-EeeccC-CCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCCc
Confidence 46789999999998888888899999999876543 322332 2233 89999 999988888765 78888876554
Q ss_pred eeeeE-Ee-cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 93 RMDTK-RL-GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 93 ~~~~~-~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
..... .+ ......+.+++++|++..++ .+..++.|+.||..++... .+......... ...+...++|+|+++
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~ly-v~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~----~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVT-LIKQLELSGSL----GTNPGPYLIYYFVDS 279 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEE-EECTTCEEEEEETTTCCEE-EEEECCCCSCC----CCSSCCEEEEETTTT
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEE-EEECCCcEEEEECCCCCEE-EEecccccCCC----CCCccccEEEeCCCC
Confidence 32111 11 22446678999999555455 4667889999999877532 22111111000 001112788999655
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 250 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 250 (439)
.++++-..++.|+.|+.... +..+.-.+. ..+. ..+
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~---------------------------~~~~~g~~~-------~~g~------~dg---- 315 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGE---------------------------CEWFCGSAT-------QKTV------QDG---- 315 (409)
T ss_dssp EEEEEETTTTEEEEECTTCC---------------------------EEEEEECTT-------CCSC------BCE----
T ss_pred EEEEEeCCCCEEEEEecCCC---------------------------EEEEEeCCC-------CCCc------CCC----
Confidence 77777777788888876531 000000000 0000 000
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC-CCCeEEEEecCCCceeEeeccc-------------
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD------------- 316 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h------------- 316 (439)
......+ .....++ ++++|+++++-. .++.|+.|++.+++.. .+.++
T Consensus 316 -----------~~~~~~~------~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~ 376 (409)
T 3hrp_A 316 -----------LREEALF------AQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLE 376 (409)
T ss_dssp -----------EGGGCBC------SSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTT
T ss_pred -----------cccccEe------CCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhc
Confidence 0000000 1257777 899999888888 8899999998777643 33333
Q ss_pred --ccceEEEeecCCCcEEEEEecCCeEEEecc
Q 013644 317 --RHVVNQLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 317 --~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
-.....+++++++.++++-..++.|+.+++
T Consensus 377 ~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 377 ATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 235789999999988888888889988765
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=1.3e-13 Score=119.58 Aligned_cols=180 Identities=12% Similarity=0.152 Sum_probs=131.9
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCc---------ceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR---------EKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
+++.+++++...++++|+.+ .+++|++++.. ........+.. |+.++| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 68999999999999999987 46679875433 11111234566 999999 47888888 88999999
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
|+.+.... .....|...+.++.+.+.. +++++.||.|.+||+.++.... +...|.|++|+
T Consensus 112 dv~sl~~~--~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---------------~~~~Vs~v~WS 171 (388)
T 1xip_A 112 DLEELSEF--RTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---------------LAQNVTSFDVT 171 (388)
T ss_dssp ESSSTTCE--EEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---------------EEESEEEEEEC
T ss_pred Echhhhcc--CccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---------------ccCCceEEEEc
Confidence 99776543 3355677788888776542 6688999999999999877643 13359999999
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcc--cCCCCCCCCcccccccccc--cCCCccEEEEEEccCCCEEEEe
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHW--YSPISSDTPVDTFCPRHLI--GKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
|+| ++.|..||.+++|+....+. ...+. ++.... .+|...|.++.|.++++++++.
T Consensus 172 pkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~--------~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 172 NSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFS--------LPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SSE---EEEEETTSCEEEEEEETTEEEEEEEEC--------CCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCc---eEEEEcCCcEEEEcCCCccccccceec--------CCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 986 67889999999998876552 11110 111111 1367889999999999999875
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=2.3e-12 Score=123.25 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=148.3
Q ss_pred ccccceEEEEECCCCCEEEE-----ecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC-----
Q 013644 12 GHKGCVNAVEFNSTGDFLVS-----GSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG----- 81 (439)
Q Consensus 12 ~h~~~I~~~~~s~~~~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----- 81 (439)
+|...+..++|||||++||. |+....|++||+.+++.+...+.. .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL---GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE---TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe---CCCEEEEEEecCccccc
Confidence 35567889999999999884 333468999999998754332211 112467787 677787777664
Q ss_pred --------cEEEEEcccCcee--eeEEecC-CCCceEEEEEccCCCcEEEEeCC---CCcEEEEEccCCC-ceeeEEeec
Q 013644 82 --------QVRLGQIFEDGRM--DTKRLGK-HQGRVYKLAVEPGSPYIIYSCGE---DGFVQHFDLRSDS-ATRLFYCSS 146 (439)
Q Consensus 82 --------~i~iw~~~~~~~~--~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~~~~~~~~ 146 (439)
.|++|++.+.... ....... |...+..+.|+|++++++++... ...|+++|+.++. ....+..
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-- 278 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-- 278 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--
Confidence 3999999776532 2222233 44457889999999987666543 3589999987764 2222221
Q ss_pred cCCCCCCCCceeeeEEEeecCCCCcEEEEeecC---ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEE
Q 013644 147 FSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 223 (439)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 223 (439)
+....... ++++++.+++....+ +.|..+|+.++..
T Consensus 279 ---------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------------------------------- 317 (693)
T 3iuj_A 279 ---------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------------------------------- 317 (693)
T ss_dssp ---------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------------------------------
T ss_pred ---------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------------------------------
Confidence 11112222 444444444444332 3455555543220
Q ss_pred ccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCC-CC--eEE
Q 013644 224 SNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLF 300 (439)
Q Consensus 224 ~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-dg--~i~ 300 (439)
...+.+..+... +. . +++++++|+.... ++ .|+
T Consensus 318 ---------------------------------------~~~~~l~~~~~~--~~--~-~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 318 ---------------------------------------AHWRDLIPERQQ--VL--T-VHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp ---------------------------------------GGCEEEECCCSS--CE--E-EEEETTEEEEEEEETTEEEEE
T ss_pred ---------------------------------------cccEEEecCCCC--EE--E-EEEECCEEEEEEEECCeeEEE
Confidence 011223333332 22 3 6777877766554 33 688
Q ss_pred EEecCCCceeEeec-ccccceEEEeecCCCcEEEEEecC----CeEEEeccCCCCC
Q 013644 301 IWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDF 351 (439)
Q Consensus 301 iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~ 351 (439)
+|++..+. ...+. .....+..+.++++++.|+....+ +.|..|++.+++.
T Consensus 354 ~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 354 QFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 89887544 33333 344567788889888866655444 7999999987764
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.53 E-value=5.8e-11 Score=102.62 Aligned_cols=229 Identities=11% Similarity=0.007 Sum_probs=139.7
Q ss_pred ceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee
Q 013644 16 CVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 16 ~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 94 (439)
-..+..|+|+ +.++++...++.|..|+..+++.. .+ .....+.+++|.| ++.++++. . ..|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~--dg~l~v~~-~-~gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKIS--DSKQLIAS-D-DGLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEE--TTEEEEEE-T-TEEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeC--CCeEEEEE-C-CCEEEEECCCCcEE
Confidence 3567899997 456667777889999998876432 22 2345799999999 88877765 3 34999998776643
Q ss_pred eeEEecC--CCCceEEEEEccCCCcEEEEeCC------CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec
Q 013644 95 DTKRLGK--HQGRVYKLAVEPGSPYIIYSCGE------DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID 166 (439)
Q Consensus 95 ~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (439)
....... ....++.++++|+|+ ++++... .+.|..++ +++...... .....+.++|+
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~------------~~~~~~~i~~s 187 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFA------------DISIPNSICFS 187 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEE------------EESSEEEEEEC
T ss_pred EEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeC------------CCcccCCeEEc
Confidence 2221111 124688999999997 4444321 23444444 333222111 11234677788
Q ss_pred CCCCcEEEEeecCceEEEEeCc--CC-cccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEc
Q 013644 167 PRNPNYFAVGGSDEYARVYDIR--KC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEK 243 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~ 243 (439)
|++..++++.+.++.|.+||+. ++ ... ..
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------------------~~--------------------------- 219 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------------------KA--------------------------- 219 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------------------CC---------------------------
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCccc---------------------Cc---------------------------
Confidence 8763344454556677777764 22 100 00
Q ss_pred cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEE
Q 013644 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 323 (439)
+....+.... .....++ ++++|++.++...++.|.+|+. +++.+..+..+...++++
T Consensus 220 -------------------~~~~~~~~~~--~~p~gi~-~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 220 -------------------EVFIDSTGIK--GGMDGSV-CDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp -------------------EEEEECTTSS--SEEEEEE-ECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred -------------------eEEEECCCCC--CCCCeeE-ECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 0000000011 1245566 7888987777666789999998 577777777666779999
Q ss_pred eec-CCCcEEEEEec
Q 013644 324 EPH-PHIPMFATCGI 337 (439)
Q Consensus 324 ~~s-~~~~~l~s~~~ 337 (439)
+|+ |+++.|+.++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88876654443
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.53 E-value=5.9e-12 Score=110.91 Aligned_cols=270 Identities=14% Similarity=0.082 Sum_probs=169.2
Q ss_pred cccceeeeeeccccceEEEEECCCCCEEEEec----------CCCeEEEEeCCCCcceeeeecC------CcccEEEEEE
Q 013644 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGS----------DDKLVIFWDWKDRREKFSYLSG------HLDNIFQTRI 65 (439)
Q Consensus 2 ~~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~------h~~~v~~~~~ 65 (439)
.+++++.++..-..+ .++++|||++|+++. .++.|.++|..+.+.+..+..+ .......+.|
T Consensus 107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence 345667777654555 899999999888775 3678999999998776554322 0123456899
Q ss_pred eecCCCcEEEEecC--CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEE
Q 013644 66 MPFTDDRKIITSSA--DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFY 143 (439)
Q Consensus 66 ~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 143 (439)
+| ++++|+++.. ++.|.+.|+.+.+.+....+.+ +....|+++..+++.+.||.+.+.+..+++......
T Consensus 185 sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~ 256 (426)
T 3c75_H 185 TP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT 256 (426)
T ss_dssp CT--TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred cC--CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence 99 9999998764 5789999998887664433321 134456555566677788888888885555442211
Q ss_pred eeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccC--CCCCCCCcccccccccccCCCccEEEE
Q 013644 144 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS--PISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
..+.. .. ......+.+.+++..+++ ....+.+.+.|+....... ....... ... .. .........+
T Consensus 257 -~~~~v-~~----~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~-~~i-~~---g~~p~g~~~v 324 (426)
T 3c75_H 257 -EVFHT-ED----ELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTE-AER-AD---DWRPGGWQQT 324 (426)
T ss_dssp -CCCSC-TT----SCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCT-TTG-GG---TEEECSSSCE
T ss_pred -eeecc-CC----CceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccc-ccc-cc---ccccCCceee
Confidence 00000 00 001123467887744444 4567899999986543110 0000000 000 00 0001112236
Q ss_pred EEccCCCEEEEec-----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-e
Q 013644 222 AYSNTSELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-Y 289 (439)
Q Consensus 222 ~~~~~~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~ 289 (439)
+++|+++.+.+.. .+.|.++|+.+. +.+..+.... ....+. ++|+|+ +
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~----------------kvv~~I~vg~---~P~gia-~spDg~~~ 384 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG----------------ERINKIELGH---EIDSIN-VSQDAEPL 384 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC----------------CEEEEEEEEE---EECEEE-ECCSSSCE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCC----------------eEEEEEECCC---CcCeEE-EccCCCEE
Confidence 8899987666542 347999999877 4555554322 367778 899999 7
Q ss_pred EEEeC-CCCeEEEEecCCCceeEee
Q 013644 290 VMSGS-DCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 290 l~~~~-~dg~i~iwd~~~~~~~~~~ 313 (439)
+++.. .++.|.++|+.+++.+..+
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEe
Confidence 87777 5899999999999999886
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.48 E-value=5.5e-11 Score=101.83 Aligned_cols=239 Identities=10% Similarity=0.010 Sum_probs=143.9
Q ss_pred eeeeccccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
..+..+........|+|+|+ +++++..++.|..|+.. ++ ... +..+...+..+++.+ +++++++...++.|.+|
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~-~~~~~~~~~gl~~d~--dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDV-LLDATAFTNGNAVDA--QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEE-EEESCSCEEEEEECT--TSCEEEEETTTTEEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEE-EeCCCCccceeeECC--CCCEEEEECCCCEEEEE
Confidence 34444556677899999998 66777788999999973 43 222 334556789999999 89877776667889999
Q ss_pred EcccCceeeeE-EecC-CCCceEEEEEccCCCcEEEE----eCC-------------CCcEEEEEccCCCceeeEEeecc
Q 013644 87 QIFEDGRMDTK-RLGK-HQGRVYKLAVEPGSPYIIYS----CGE-------------DGFVQHFDLRSDSATRLFYCSSF 147 (439)
Q Consensus 87 ~~~~~~~~~~~-~~~~-~~~~v~~i~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 147 (439)
+.. ++..... ...+ ....++.+++.|+|. ++++ |.. .+.|..||..+++..... .
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--- 186 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--- 186 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---
Confidence 975 4332111 1111 123467899999997 5655 321 245666666555543322 1
Q ss_pred CCCCCCCCceeeeEEEeecCCCCcEEEEeecC------ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEE
Q 013644 148 SENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL 221 (439)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (439)
....+.++|+|++ +.|+.+... +.|.+|++.... +..
T Consensus 187 ---------~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~--------------------------l~~- 229 (305)
T 3dr2_A 187 ---------LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA--------------------------LHD- 229 (305)
T ss_dssp ---------ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE--------------------------EEE-
T ss_pred ---------CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC--------------------------ccC-
Confidence 1124567777776 444444333 456666654311 000
Q ss_pred EEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEE
Q 013644 222 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 301 (439)
Q Consensus 222 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~i 301 (439)
...+... .......++ ++++|++.++ +. +.|.+
T Consensus 230 -------------------------------------------~~~~~~~-~~~~pdgi~-~d~~G~lwv~-~~-~gv~~ 262 (305)
T 3dr2_A 230 -------------------------------------------RRHFASV-PDGLPDGFC-VDRGGWLWSS-SG-TGVCV 262 (305)
T ss_dssp -------------------------------------------EEEEECC-SSSCCCSEE-ECTTSCEEEC-CS-SEEEE
T ss_pred -------------------------------------------CeEEEEC-CCCCCCeEE-ECCCCCEEEe-cC-CcEEE
Confidence 0000000 001134556 7889985444 44 45999
Q ss_pred EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEE
Q 013644 302 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
|+. +++.+..+..+. .+.+++|+|+++.|..++.++..++
T Consensus 263 ~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 263 FDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp ECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred ECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 998 477777776554 5889999999988887776654443
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=7.2e-11 Score=101.65 Aligned_cols=208 Identities=10% Similarity=0.044 Sum_probs=132.4
Q ss_pred CCCceEEEEEccCCCcEEEE-------eCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 102 HQGRVYKLAVEPGSPYIIYS-------CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 102 ~~~~v~~i~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
.-....+++|++++. ++++ ...++.|..||..+++...... ... ..+...+.+++++++++++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~------~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEV------NGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEE------TTEECCEEEEEECSSSSEEEE
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-ccc------CCCCCCCceEEEecCCCcEEE
Confidence 345568999999886 6666 5678899999988776543221 000 002345789999998325555
Q ss_pred EeecCceEEEEeCcCCcccCC-CCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C---------------Ce
Q 013644 175 VGGSDEYARVYDIRKCHWYSP-ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D---------------EL 237 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d---------------~~ 237 (439)
+.. ...|.+||.. ++.... ... ........+..++++++|+++++.. + +.
T Consensus 88 ~~~-~~~l~~~d~~-g~~~~~~~~~-----------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 88 ADM-RLGLLVVQTD-GTFEEIAKKD-----------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EET-TTEEEEEETT-SCEEECCSBC-----------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EEC-CCCEEEEeCC-CCEEEEEecc-----------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 444 4478899987 553211 100 0011234578899999999888775 3 46
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC----CCCceE-EEeCCCCeEEEEecC-CCc---
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG----PNDEYV-MSGSDCGHLFIWKKK-GGK--- 308 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s----~~~~~l-~~~~~dg~i~iwd~~-~~~--- 308 (439)
|..|+.. + +. ..+..+.. ....++ ++ ++++.+ ++...++.|.+|+.. +++
T Consensus 155 l~~~~~~-g----------------~~-~~~~~~~~--~~~~i~-~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 155 IYCFTTD-G----------------QM-IQVDTAFQ--FPNGIA-VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp EEEECTT-S----------------CE-EEEEEEES--SEEEEE-EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred EEEECCC-C----------------CE-EEeccCCC--CcceEE-EecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 7777654 2 11 11111111 246667 78 899765 444667999999976 443
Q ss_pred --eeEeecccc-cceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 309 --LVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 309 --~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
....+..+. ..+..++++++|+++++...++.|.+|+..+++.
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE
Confidence 233344443 5678899999999888887889999999985543
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=1.1e-11 Score=107.33 Aligned_cols=271 Identities=7% Similarity=-0.106 Sum_probs=170.6
Q ss_pred CEEEEecCCC----eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec----------CCCcEEEEEcccCc
Q 013644 27 DFLVSGSDDK----LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS----------ADGQVRLGQIFEDG 92 (439)
Q Consensus 27 ~~l~t~~~dg----~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iw~~~~~~ 92 (439)
+.+++...++ .|.+.|..+++.+.++..+.. + .+.++| ++++++++. .++.|.+||+.+.+
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 3444444444 888999999988777655554 4 799999 999998875 36889999999988
Q ss_pred eeeeEEecCC-----CCceEEEEEccCCCcEEEEeCC-CCcEEE--EEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 93 RMDTKRLGKH-----QGRVYKLAVEPGSPYIIYSCGE-DGFVQH--FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 93 ~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~s~~~-dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
......+.+. ......++++|+|++++++... ...|.+ +|+.+ ...+... . +..
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~------------~---~~~ 169 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA------------S---CFH 169 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS------------S---CCC
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC------------C---ceE
Confidence 7755444311 1235679999999976655433 467888 88877 3333210 0 122
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcC-----CcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEE
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRK-----CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY 239 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~ 239 (439)
+.|++...+++.+.|+.+.+.|+.+ ++...... ....-...+. .....+.++++.. +.+.
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-----------~~i~vg~~P~---~~~~~~~~~~vs~-~~V~ 234 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-----------GAQNCSSQAA---QANYPGMLVWAVA-SSIL 234 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-----------TTSCBCSCCE---EETTTTEEEECBS-SCCE
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-----------eeeeCCCCcc---ccccCCEEEEEcC-CEEE
Confidence 3455556677777888888888876 33211000 0001112222 3334445555556 8999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEeC-------CC-CcceeeeEEeeCCCCceEEEeCC---------CCeEEEE
Q 013644 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-------HR-NSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIW 302 (439)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~v~~~~~~s~~~~~l~~~~~---------dg~i~iw 302 (439)
+.|....... ....+.. +. .+.....+. ++|+++.++.+.. ++.+.++
T Consensus 235 viD~~~~~~~--------------v~~~~~~~~~~~~~~~~~p~g~~~v~-~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 235 QGDIPAAGAT--------------MKAAIDGNESGRKADNFRSAGFQMVA-KLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp EEECCSSCCE--------------EECCCCSSCTHHHHTTEEECSSSCEE-EETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred EEECCCCcce--------------EEEEEEeccccccccccccCcceeeE-EcCCCCEEEEEeccccCcccccCCCEEEE
Confidence 9998643100 0000000 00 000011245 7899988776532 2356699
Q ss_pred ecCCCceeEeecccccceEEEeecCCCc-EEEEEe-cCCeEEEeccCCCCC
Q 013644 303 KKKGGKLVRLMVGDRHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 351 (439)
Q Consensus 303 d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~ 351 (439)
|+.+++.+..+.... ....++|+|||+ ++++.. .++.|.++|+.+.+.
T Consensus 300 D~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 300 TASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp ESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 999999998887543 578999999998 566666 599999999988765
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.43 E-value=5.3e-10 Score=98.87 Aligned_cols=314 Identities=8% Similarity=-0.020 Sum_probs=177.0
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCC--------cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGH--------LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h--------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
.+..+++++.++.|..+|..+++.+....... ...+.+.... ++..++.++.++.|..+|..+++....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 35567778888999999999988765442211 1223222222 566788888899999999998887644
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
..+.... ....... ++ .++.++.++.|..+|.++++............ . .......... + ..++++
T Consensus 129 ~~~~~~~--~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--~----~~~~~~~~~~--~-~~v~~g 194 (376)
T 3q7m_A 129 TKVAGEA--LSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--S----LRGESAPTTA--F-GAAVVG 194 (376)
T ss_dssp EECSSCC--CSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--T-TEEEEC
T ss_pred EeCCCce--EcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--e----ecCCCCcEEE--C-CEEEEE
Confidence 4433211 1111222 33 46678889999999999998776654321100 0 0000111122 2 467788
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCc
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~ 256 (439)
+.++.+..+|..+++.+.......+........+......++ ..++.+++.+.++.+..+|..++
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~v~~~~~~g~l~~~d~~tG---------- 259 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV-----VVNGVVFALAYNGNLTALDLRSG---------- 259 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE-----EETTEEEEECTTSCEEEEETTTC----------
T ss_pred cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE-----EECCEEEEEecCcEEEEEECCCC----------
Confidence 889999999999887543222111100000000000001111 12345555555899999999876
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc-cccceEEEeecCCCcEEEEE
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~ 335 (439)
+....... .. ...+. .++..++.++.++.|..+|..+++.+..... ....+..... .+..|+.+
T Consensus 260 ------~~~w~~~~--~~--~~~~~---~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~ 324 (376)
T 3q7m_A 260 ------QIMWKREL--GS--VNDFI---VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVG 324 (376)
T ss_dssp ------CEEEEECC--CC--EEEEE---EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEE
T ss_pred ------cEEeeccC--CC--CCCce---EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEE
Confidence 22222221 11 23333 2456777778889999999999998766652 1222222333 24577888
Q ss_pred ecCCeEEEeccCCCCCC-CCCCchhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 336 GIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 336 ~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
+.+|.|.++|..+++.. ........+... ....+..++..+.+|.+.+|+
T Consensus 325 ~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~--~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 DSEGYLHWINVEDGRFVAQQKVDSSGFQTE--PVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCTTCBCSC--CEEETTEEEEEBTTSCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEecCCCcceeC--CEEECCEEEEEeCCCEEEEEe
Confidence 88999999999887752 111111111111 111234566777788888775
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=7.9e-12 Score=108.53 Aligned_cols=175 Identities=10% Similarity=0.006 Sum_probs=119.5
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce--------eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEE
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR--------MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQH 130 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 130 (439)
+++.+++++ ...++++|+.+ .+.+|++..... ........+.. |+.++| +++ +|+++ .++.|++
T Consensus 39 ~~nlLais~--~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISN--SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGD-QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEET--TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred cccEEEEcC--CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence 688899999 89999999987 566698754330 11111223556 999999 776 56566 8899999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
||+.+......... +...+.++.+.+. .+++++.||.|.+||+..++.
T Consensus 111 ~dv~sl~~~~~~~~-----------~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~------------------ 158 (388)
T 1xip_A 111 LDLEELSEFRTVTS-----------FEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST------------------ 158 (388)
T ss_dssp EESSSTTCEEEEEE-----------CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE------------------
T ss_pred EEchhhhccCccce-----------eecceeeEEecCC---CEEEEECCCCEEEEEccCCcc------------------
Confidence 99988764443332 2334566655542 277777788888888775431
Q ss_pred ccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE
Q 013644 211 IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 290 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l 290 (439)
.. +. ..|.+++ |||+| +
T Consensus 159 -------------------------------------------------------~~---~~--~~Vs~v~-WSpkG--~ 175 (388)
T 1xip_A 159 -------------------------------------------------------KQ---LA--QNVTSFD-VTNSQ--L 175 (388)
T ss_dssp -------------------------------------------------------EE---EE--ESEEEEE-ECSSE--E
T ss_pred -------------------------------------------------------cc---cc--CCceEEE-EcCCc--e
Confidence 00 00 1278888 78888 6
Q ss_pred EEeCCCCeEEEEecCCCce--eEee------c---ccccceEEEeecCCCcEEEEEe
Q 013644 291 MSGSDCGHLFIWKKKGGKL--VRLM------V---GDRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 291 ~~~~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~~~~s~~~~~l~s~~ 336 (439)
+.|..||.+++|+...++. ..++ . +|...|.+|.|.+++.++++-+
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 6788889999998877664 4455 2 3678899999999998887643
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.38 E-value=3.2e-11 Score=104.50 Aligned_cols=273 Identities=9% Similarity=-0.061 Sum_probs=165.8
Q ss_pred ccceeeeeeccccceEEEEECCCCCEEEEec----------CCCeEEEEeCCCCcceeeeecC-C-----cccEEEEEEe
Q 013644 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGS----------DDKLVIFWDWKDRREKFSYLSG-H-----LDNIFQTRIM 66 (439)
Q Consensus 3 ~~~~~~~l~~h~~~I~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-h-----~~~v~~~~~~ 66 (439)
+++.+.++..-..+ .+.++|||++++++. .++.|.+||..+.+.+.++..+ . ......++++
T Consensus 55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S 132 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence 46677777655556 799999999988875 3689999999999877665322 0 1234578999
Q ss_pred ecCCCcEEEEecC--CCcEEE--EEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-----CC
Q 013644 67 PFTDDRKIITSSA--DGQVRL--GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-----DS 137 (439)
Q Consensus 67 ~~~~~~~l~s~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~ 137 (439)
| |+++++++.. ...+.+ +|+.+ ....... +. +.+.|+++..+++.+.|+.+.+.++.+ ++
T Consensus 133 p--DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~---~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 133 A--SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA---SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp T--TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS---SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred C--CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC---Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 9 9999998864 467888 88876 2111121 11 234567766777888899998888876 33
Q ss_pred ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCc--ccCCCCCCCCcccccccccccCCC
Q 013644 138 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
...... ... .....+. . .++++.++++ +. +.+.+.|..... ....+...... .... ....
T Consensus 202 v~~~~t--~~i-----~vg~~P~---~-~~~~~~~~~v-s~-~~V~viD~~~~~~~v~~~~~~~~~~--~~~~---~~~p 263 (368)
T 1mda_H 202 VGAQCT--GAQ-----NCSSQAA---Q-ANYPGMLVWA-VA-SSILQGDIPAAGATMKAAIDGNESG--RKAD---NFRS 263 (368)
T ss_dssp CCCCSC--TTS-----CBCSCCE---E-ETTTTEEEEC-BS-SCCEEEECCSSCCEEECCCCSSCTH--HHHT---TEEE
T ss_pred EEEEee--eee-----eCCCCcc---c-cccCCEEEEE-cC-CEEEEEECCCCcceEEEEEEecccc--cccc---cccc
Confidence 221100 000 0011222 2 4555344444 44 899999986532 11111000000 0000 0001
Q ss_pred ccEEEEEEccCCCEEEEe-c-C--------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC
Q 013644 216 IHITGLAYSNTSELLISY-N-D--------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 285 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~-~-d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 285 (439)
.....++++|+++.+..+ . . +.+.++|+.+. +.+..+.... ...++. ++|
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~----------------~vv~~i~vg~---~p~gi~-~s~ 323 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG----------------QTSGPISNGH---DSDAII-AAQ 323 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC----------------CEEECCEEEE---EECEEE-ECC
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC----------------eEEEEEECCC---CcceEE-ECC
Confidence 111226799998776654 3 2 36779999876 3334443322 367788 899
Q ss_pred CCce-EEEeC-CCCeEEEEecCCCceeEeecccccceEEEeecC
Q 013644 286 NDEY-VMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 327 (439)
Q Consensus 286 ~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 327 (439)
||++ +++.. .++.|.++|+.+++.+..+..... ...+++.+
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 9984 55555 589999999999999998875533 34566544
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=7.1e-10 Score=94.48 Aligned_cols=204 Identities=8% Similarity=0.012 Sum_probs=133.0
Q ss_pred CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce
Q 013644 102 HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY 181 (439)
Q Consensus 102 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 181 (439)
...-..+..|+|++..++++...++.|+.||..+++.. .+. ....+.+++++|++ +++++ . +..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~------------~~~~~~~i~~~~dG-~l~v~-~-~~~ 74 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT------------MDAPVSSVALRQSG-GYVAT-I-GTK 74 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE------------CSSCEEEEEEBTTS-SEEEE-E-TTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe------------CCCceEEEEECCCC-CEEEE-E-CCe
Confidence 33455789999977778888888999999999887642 222 13358899999987 54444 3 568
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C---------CeEEEEEccCCCCCCC
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D---------ELVYLFEKNMGLGPSP 251 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~ 251 (439)
|.+||..+++..... .. ........+..++++|+|+++++.. . ..-.+|.+...
T Consensus 75 l~~~d~~~g~~~~~~----------~~-~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----- 138 (297)
T 3g4e_A 75 FCALNWKEQSAVVLA----------TV-DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----- 138 (297)
T ss_dssp EEEEETTTTEEEEEE----------EC-CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----
T ss_pred EEEEECCCCcEEEEE----------ec-CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-----
Confidence 999998876521100 00 0011234578999999999877652 1 22344444321
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEec--CCCce-----eEeecccccceEEE
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK--KGGKL-----VRLMVGDRHVVNQL 323 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~--~~~~~-----~~~~~~h~~~v~~~ 323 (439)
.....+..... ....++ |+|+++.| ++.+.++.|.+|++ .++.. ...+..+...+..+
T Consensus 139 -----------g~~~~~~~~~~--~pngi~-~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~ 204 (297)
T 3g4e_A 139 -----------HHVKKYFDQVD--ISNGLD-WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM 204 (297)
T ss_dssp -----------SCEEEEEEEES--BEEEEE-ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE
T ss_pred -----------CCEEEEeeccc--cccceE-EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee
Confidence 01111111111 256778 89999866 45566789999987 45543 22333344567899
Q ss_pred eecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 324 EPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
++.++|++.++....+.|..|++.++++
T Consensus 205 ~~d~~G~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 205 CIDAEGKLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence 9999999888887888999999986654
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.37 E-value=1.2e-10 Score=103.62 Aligned_cols=246 Identities=9% Similarity=0.011 Sum_probs=153.1
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--e
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--Y 181 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~ 181 (439)
.....++|++++. ++++...++.|+.||..++......... . ... ++|+|++ ..|+++..++ .
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~-----------~-~~~-ia~~~~g-~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF-----------K-GGK-PAVTKDK-QRVYSIGWEGTHT 195 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC-----------C-BCB-CEECTTS-SEEEEEBSSTTCE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC-----------C-CCc-eeEecCC-CcEEEEecCCCce
Confidence 4678999999987 7778788899999999887665443321 1 123 8999987 5666666655 7
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEecCCeEEEEEccCCCCCCCCCCCccccc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
|.+++.......... ..........+..++++| ++.++++..++.|+.||..++.
T Consensus 196 I~~~d~~~~~~~~~~-----------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~------------- 251 (409)
T 3hrp_A 196 VYVYMKASGWAPTRI-----------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE------------- 251 (409)
T ss_dssp EEEEEGGGTTCEEEE-----------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-------------
T ss_pred EEEEEcCCCceeEEe-----------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-------------
Confidence 888887654311000 000011345567899999 5666664348899999987651
Q ss_pred ccccceeE-----eCCCCcceeeeEEeeCC-CCceEEEeCCCCeEEEEecCCCceeEeecccc---------------cc
Q 013644 261 KREEPQVY-----SGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR---------------HV 319 (439)
Q Consensus 261 ~~~~~~~~-----~~~~~~~~v~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------------~~ 319 (439)
...+ .+.....+...++ ++| ++.++++-..++.|+.|+.... +..+.++. ..
T Consensus 252 ----~~~~~~~~~~g~~~~~P~~~ia-~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 252 ----VTLIKQLELSGSLGTNPGPYLI-YYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp ----EEEEEECCCCSCCCCSSCCEEE-EETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred ----EEEEecccccCCCCCCccccEE-EeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCC
Confidence 1111 1111111012777 788 5677777778899999997643 22332221 34
Q ss_pred eEEEeecCCCcEEEEEe-cCCeEEEeccCCCCCCCCCCchhhhh----hhhccccCcceEEEeCCCcEEEEEEeccccee
Q 013644 320 VNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPDNAEKIM----KANKQGREDHSRITLTPDVIMHVLRLQRRQTL 394 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~ 394 (439)
...++++|+|+++++-. .++.|+.|++.++.+..+.++...-- ...........-+++++||.+.+-+..+.+..
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 78999999999888877 78999999976665433322100000 00001123456788999999888887666544
Q ss_pred e
Q 013644 395 A 395 (439)
Q Consensus 395 ~ 395 (439)
+
T Consensus 405 ~ 405 (409)
T 3hrp_A 405 K 405 (409)
T ss_dssp E
T ss_pred E
Confidence 3
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=1.4e-10 Score=111.03 Aligned_cols=250 Identities=9% Similarity=0.023 Sum_probs=147.8
Q ss_pred CCCceEEEEEccCCCcEEEEeCC----CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 102 HQGRVYKLAVEPGSPYIIYSCGE----DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 102 ~~~~v~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
+...+..++|+|||++++++.+. ...|++||+.+++...... .......++|+ ++ +.|+.++
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~------------~~~k~~~~~Ws-Dg-~~l~y~~ 192 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL------------KDVKFSGISWL-GN-EGFFYSS 192 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE------------EEEESCCCEEE-TT-TEEEEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc------------CCceeccEEEe-CC-CEEEEEE
Confidence 55578899999999976655433 3579999999998654321 11223568899 87 5666665
Q ss_pred cCc-------------eEEEEeCcCCcccCCCCCCCCcccccccccccC-CCccEEEEEEccCCCEEEEec-----CCeE
Q 013644 178 SDE-------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNTSELLISYN-----DELV 238 (439)
Q Consensus 178 ~dg-------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----d~~i 238 (439)
.+. .|++|++.+..... ........ +......+.|+|+|++|+... ...|
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDD-----------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGC-----------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccc-----------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 553 48899987644100 00000112 234577899999999876542 2489
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc-eEEEeCC---CCeEEEEecCCCce--eEe
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSD---CGHLFIWKKKGGKL--VRL 312 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~-~l~~~~~---dg~i~iwd~~~~~~--~~~ 312 (439)
+++|+.++. .....+..+... .... ++++|. +++.... .+.|..+++.++.. ...
T Consensus 262 ~~~d~~~~~---------------~~~~~l~~~~~~--~~~~--~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~ 322 (693)
T 3iuj_A 262 YVKDLSQEN---------------APLLTVQGDLDA--DVSL--VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD 322 (693)
T ss_dssp EEEETTSTT---------------CCCEEEECSSSS--CEEE--EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEEECCCCC---------------CceEEEeCCCCc--eEEE--EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence 999987652 133445444433 2222 344555 4444444 36899999987654 345
Q ss_pred ecccccceEEEeecCCCcEEEEEec-CC--eEEEeccCCCCCCCCC-CchhhhhhhhccccCcceEEEeCC---CcEEEE
Q 013644 313 MVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTP---DVIMHV 385 (439)
Q Consensus 313 ~~~h~~~v~~~~~s~~~~~l~s~~~-dg--~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~---dg~v~~ 385 (439)
+..|...+. .|+++++.|+.... ++ .|++|++.++....+. .....+.............++.+. -+.+..
T Consensus 323 l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~ 400 (693)
T 3iuj_A 323 LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400 (693)
T ss_dssp EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence 666665554 88999987776655 43 7889998765442222 111222222211222334444432 278889
Q ss_pred EEecccceeeee
Q 013644 386 LRLQRRQTLAYR 397 (439)
Q Consensus 386 w~~~~~~~~~~~ 397 (439)
|++.+++...+.
T Consensus 401 ~d~~~g~~~~l~ 412 (693)
T 3iuj_A 401 FEPKSGAISLYR 412 (693)
T ss_dssp ECTTTCCEEEEE
T ss_pred EECCCCeEEEEE
Confidence 998777655443
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.34 E-value=6e-10 Score=105.85 Aligned_cols=288 Identities=10% Similarity=0.015 Sum_probs=161.4
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecC-CcccEEEEEEeecC-CCcEEEEec-----CCCcEEEEEcccCceeeeEE
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSG-HLDNIFQTRIMPFT-DDRKIITSS-----ADGQVRLGQIFEDGRMDTKR 98 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~~~~~-~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 98 (439)
+..++.++.|+.|..+|..+++.+-+.... +......+..+|.- ++..++..+ .++.|..||..+++.+-...
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 456788888999999999999877654332 21111111111100 444444322 37899999999988764433
Q ss_pred ecCC-----------------------------CCceEEEEEccCCCcEEEEeCCCCc-------------------EEE
Q 013644 99 LGKH-----------------------------QGRVYKLAVEPGSPYIIYSCGEDGF-------------------VQH 130 (439)
Q Consensus 99 ~~~~-----------------------------~~~v~~i~~~~~~~~~l~s~~~dg~-------------------i~i 130 (439)
.... ......+++.|+.. +++.+..++. |..
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 2110 01112578888876 6777777753 999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC--CcEEEEeecCceEEEEeCcCCcccCCCCCCCCc--c---
Q 013644 131 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV--D--- 203 (439)
Q Consensus 131 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~--- 203 (439)
+|.++++....+.................+..+.+ ++ ...++.++.+|.++++|.++++.+......... .
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 99999998776653211000000000011122222 23 137889999999999999999876322111100 0
Q ss_pred --ccccc---c-c--ccC-----------CCccEEEEEEccCCCEEEEec-C----------------------------
Q 013644 204 --TFCPR---H-L--IGK-----------NNIHITGLAYSNTSELLISYN-D---------------------------- 235 (439)
Q Consensus 204 --~~~~~---~-~--~~~-----------~~~~i~~~~~~~~~~~l~~~~-d---------------------------- 235 (439)
...+. . . ... .......++++|+..++++.. +
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 00000 0 0 000 001122377888877666542 2
Q ss_pred -----------------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCe
Q 013644 236 -----------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 298 (439)
Q Consensus 236 -----------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~ 298 (439)
+.|..||+.++ +..-.+..+.. ...-. +...+.+++.|+.||.
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG----------------~~~W~~~~~~~---~~~g~-~~tagglvf~gt~dg~ 497 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ----------------QAAWEVPYVTI---FNGGT-LSTAGNLVFEGSADGR 497 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT----------------EEEEEEEESSS---CCCCE-EEETTTEEEEECTTSE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC----------------CeEeEccCCCC---ccCcc-ceECCCEEEEECCCCc
Confidence 45666666655 33333333321 11112 3457788999999999
Q ss_pred EEEEecCCCceeEeeccccc-ceEEEeecCCCc-EEEEEe
Q 013644 299 LFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIP-MFATCG 336 (439)
Q Consensus 299 i~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~~~-~l~s~~ 336 (439)
++.||.++|+.+..+..... ...-+.|..+|+ |+++.+
T Consensus 498 l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 498 VIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 99999999999988875433 223466677887 444443
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.33 E-value=6.2e-10 Score=96.12 Aligned_cols=195 Identities=10% Similarity=-0.039 Sum_probs=126.6
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
-..+.+|+|++..++++...++.|..||..+++.. .+. ....+.+++++|++ +++++ +.+ .|.+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~------------~~~~v~~i~~~~dg-~l~v~-~~~-gl~~ 113 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA------------LPFMGSALAKISDS-KQLIA-SDD-GLFL 113 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE------------CSSCEEEEEEEETT-EEEEE-ETT-EEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE------------CCCcceEEEEeCCC-eEEEE-ECC-CEEE
Confidence 34678899987778888888899999999876543 221 12348889999987 55554 344 4999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecC-------CeEEEEEccCCCCCCCCCCCcc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND-------ELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
||..+++...... . ........+..+.++|+|+++++..+ +.|+.++ ++
T Consensus 114 ~d~~~g~~~~~~~----------~-~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g----------- 169 (326)
T 2ghs_A 114 RDTATGVLTLHAE----------L-ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG----------- 169 (326)
T ss_dssp EETTTCCEEEEEC----------S-STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-----------
T ss_pred EECCCCcEEEEee----------C-CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-----------
Confidence 9987765311000 0 00111346889999999998776532 4555555 22
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCCceEE-EeCCCCeEEEEecC--CC-ce-----eEeecccccceEEEeecCC
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKK--GG-KL-----VRLMVGDRHVVNQLEPHPH 328 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~-~~~~dg~i~iwd~~--~~-~~-----~~~~~~h~~~v~~~~~s~~ 328 (439)
....+..... ....++ |+|+++.++ +.+.++.|.+|++. ++ +. ...+......+..+++.++
T Consensus 170 ------~~~~~~~~~~--~~~~i~-~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 170 ------KVTKLFADIS--IPNSIC-FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp ------EEEEEEEEES--SEEEEE-ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred ------cEEEeeCCCc--ccCCeE-EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 1112211111 256777 899998664 44567899999985 55 32 2233333456788999999
Q ss_pred CcEEEEEecCCeEEEeccCC
Q 013644 329 IPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw~~~~ 348 (439)
|.+.++...++.|.+|+..+
T Consensus 241 G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp SCEEEEEETTTEEEEECTTC
T ss_pred CCEEEEEeCCCEEEEECCCC
Confidence 99887776778999999843
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.31 E-value=1.7e-08 Score=84.48 Aligned_cols=253 Identities=11% Similarity=0.047 Sum_probs=154.4
Q ss_pred CCEEEEecCCCeEEEEeCCCCcce----eeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCceeeeEEec
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREK----FSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDGRMDTKRLG 100 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~ 100 (439)
|.+|+.+.. +.|+.+++...... ...+.........++|.+ ++..|+ +-...+.|..+++...... ..+.
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~ 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPT--TIIR 75 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCE--EEEC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcE--EEEE
Confidence 345555543 47888887664321 111222234578899998 666555 4455789999998654332 2222
Q ss_pred CCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec--
Q 013644 101 KHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-- 178 (439)
Q Consensus 101 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 178 (439)
........+++++++..++++-...+.|.++++..... ..+... .......++++|+++.++++...
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~----------~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDT----------GLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS----------SCSSEEEEEEETTTTEEEEEECCSS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEEC----------CCCCccEEEEeeCCCEEEEEECCCC
Confidence 23356789999998776777777788999999875432 222111 01235789999976455555443
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCc
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSP 256 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~ 256 (439)
.+.|..+++..... ..+..........+++++++..|..+ . .+.|..++....
T Consensus 145 ~~~I~~~~~dg~~~---------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---------- 199 (267)
T 1npe_A 145 NPKIETSHMDGTNR---------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------- 199 (267)
T ss_dssp SCEEEEEETTSCCC---------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE----------
T ss_pred CcEEEEEecCCCCc---------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC----------
Confidence 46888888764221 00111123457889999987665555 3 789999998643
Q ss_pred ccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-cceEEEeecCCCc
Q 013644 257 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIP 330 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~ 330 (439)
.....+.... ....++ .. .+.++++....+.|.++|..+++.+..+.... .....+++.|++.
T Consensus 200 ------~~~~~~~~~~---~P~gi~-~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 200 ------GRRKVLEGLQ---YPFAVT-SY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ------EEEEEEECCC---SEEEEE-EE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ------ceEEEecCCC---CceEEE-Ee-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 1111222221 234555 33 44555555567899999999999888876432 2467788887754
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=7.4e-11 Score=102.79 Aligned_cols=268 Identities=8% Similarity=0.023 Sum_probs=158.5
Q ss_pred ccEEEEEEeecCCCcEEEEec--CCCcEEEEEcccCceeee----EEecCCCCceEEEEEccCCCcEEEEeCC-----CC
Q 013644 58 DNIFQTRIMPFTDDRKIITSS--ADGQVRLGQIFEDGRMDT----KRLGKHQGRVYKLAVEPGSPYIIYSCGE-----DG 126 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg 126 (439)
.....++++| +++.+++.. .++.++||.+.+++.... .....+...+..+++++++. ++++-.. ++
T Consensus 17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECC--CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 5788999999 999888854 234366676653322100 00123456899999999986 5554433 57
Q ss_pred cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee---cCceEEEEeCcCCcccCCCCCCCCcc
Q 013644 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVD 203 (439)
Q Consensus 127 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~ 203 (439)
.|.+||+.+++....+....... .+...+..++++|+++..+++.. .++.|.+||+.+++.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~-----~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~------- 161 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPIT-----LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL------- 161 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTS-----CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC-------
T ss_pred eEEEEECCCCeEEEEEECChhhc-----ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe-------
Confidence 89999999888666654321100 02234688999986556666665 6789999999876532211
Q ss_pred cccccccccCCCcc-EEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEE
Q 013644 204 TFCPRHLIGKNNIH-ITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 281 (439)
Q Consensus 204 ~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 281 (439)
..|... .....+.++|..+.... ++.+..|.. .+..++
T Consensus 162 --------~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------------------------~~~gia 201 (343)
T 2qe8_A 162 --------QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------------------------GVNGIV 201 (343)
T ss_dssp --------TTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------------------------CEEEEE
T ss_pred --------cCCCcccccccceeECCEEEEeccCCCceeceec--------------------------------ccceeE
Confidence 110000 00022333554444333 444433311 156788
Q ss_pred eeCCCCceEEEeCCCC-eEEEEecC---CCc-----eeE--eecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 282 FFGPNDEYVMSGSDCG-HLFIWKKK---GGK-----LVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 282 ~~s~~~~~l~~~~~dg-~i~iwd~~---~~~-----~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
++|+|+.|+.+...+ .+..++.. .+. ... ...++......++++++|.++++...++.|.+|+..+++
T Consensus 202 -~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 202 -LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp -ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred -eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 899999888776655 55555532 111 111 111333456679999999999999889999999984443
Q ss_pred CCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecc
Q 013644 351 FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 390 (439)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~ 390 (439)
...+... .......-+++++||.+.+-..+.
T Consensus 281 ~~~~~~~---------~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 281 YKLLVTD---------EKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EEEEEEC---------GGGSCEEEEEECTTSCEEEEECCG
T ss_pred EEEEEEC---------CceecCCeeEECCCCcEEEEeCcc
Confidence 2111100 001223577888899887776544
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=9.5e-10 Score=104.27 Aligned_cols=310 Identities=9% Similarity=0.053 Sum_probs=173.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcc----------cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD----------NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
+..|++++.++.|.-+|..+++.+-++...... ....+++ .+..|+.++.|+.|..+|..+++.+-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 445666777889999999998876554221110 0112233 45678888899999999999988775
Q ss_pred eEEec-CCC--CceEE-EEEccCCCcEEEEeCC------CCcEEEEEccCCCceeeEEeeccCCCCCC------------
Q 013644 96 TKRLG-KHQ--GRVYK-LAVEPGSPYIIYSCGE------DGFVQHFDLRSDSATRLFYCSSFSENSKQ------------ 153 (439)
Q Consensus 96 ~~~~~-~~~--~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------ 153 (439)
..... ... ..+.+ ... .++ .++.++. ++.|+.||.++++.+..+...........
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v-~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV-FKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE-ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eecCCcCcCcCcccccCcEE-ECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 54432 100 11111 111 133 3445443 79999999999998776654221100000
Q ss_pred C---------CceeeeEEEeecCCCCcEEEEeecCc-------------------eEEEEeCcCCcccCCCCCCCCcccc
Q 013644 154 P---------MNSIRLNAIVIDPRNPNYFAVGGSDE-------------------YARVYDIRKCHWYSPISSDTPVDTF 205 (439)
Q Consensus 154 ~---------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~~~ 205 (439)
. ........++++|++ .+++.++.++ .|..+|..+++.+-....... ..+
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~-d~w 307 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG-DNW 307 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-CCS
T ss_pred cccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC-ccc
Confidence 0 001112356788876 5677666554 599999998875432211000 000
Q ss_pred cccccccCCCccEEEEEEccCC---CEEEEec-CCeEEEEEccCCCCCCCCCCCccc----c-cccccc-----------
Q 013644 206 CPRHLIGKNNIHITGLAYSNTS---ELLISYN-DELVYLFEKNMGLGPSPLSLSPED----L-QKREEP----------- 265 (439)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~----~-~~~~~~----------- 265 (439)
- .........+....+| ..++.++ +|.++++|..++.......+.+.. + ...+..
T Consensus 308 ----d-~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 308 ----D-YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP 382 (677)
T ss_dssp ----C-CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred ----c-cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence 0 0001122223333466 5666665 999999999887422111100000 0 000000
Q ss_pred -eeEeCCCCcceeeeEEeeCCCCceEEEeCC-------------------------------------------CCeEEE
Q 013644 266 -QVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-------------------------------------------CGHLFI 301 (439)
Q Consensus 266 -~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~-------------------------------------------dg~i~i 301 (439)
..+.+......-..++ ++|++.++++... .|.|..
T Consensus 383 ~~~~P~~~G~~~w~~~a-~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMS-FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp EECSSCTTCSSCSSCCE-EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred cEECcCcccccCCCCce-EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 0000000000012345 6788777766432 278999
Q ss_pred EecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 302 WKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 302 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
||+.+++.+..+.. ..++....+...+.+++.++.||.+++||..+++.
T Consensus 462 ~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 462 WDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 99999998877763 34445555667788888899999999999998875
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=1.1e-09 Score=104.19 Aligned_cols=311 Identities=12% Similarity=0.125 Sum_probs=172.6
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcc---------cE-EEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD---------NI-FQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~---------~v-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
+..+++++.++.|..+|..+++.+-++...... .+ ..+.+ .+..++.++.|+.|..+|..+++.+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEee
Confidence 456777777899999999999877664211110 00 11222 45678888899999999999998775
Q ss_pred eEEecCCCCceEEEEEcc---CCCcEEEEeC------CCCcEEEEEccCCCceeeEEeeccCCCCCCC------------
Q 013644 96 TKRLGKHQGRVYKLAVEP---GSPYIIYSCG------EDGFVQHFDLRSDSATRLFYCSSFSENSKQP------------ 154 (439)
Q Consensus 96 ~~~~~~~~~~v~~i~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------ 154 (439)
......+......+..+| ++ .++.+. .++.|+.||.++++.+..+......+.....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eecCcCCCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 444320111101111111 44 233443 3789999999999987666532100000000
Q ss_pred --------CceeeeEEEeecCCCCcEEEEeecCce-------------------EEEEeCcCCcccCCCCCCCCcccccc
Q 013644 155 --------MNSIRLNAIVIDPRNPNYFAVGGSDEY-------------------ARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 155 --------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
........++++|++ .+++.++.++. |..+|..+++.+-....... ...
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~-d~w-- 299 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG-DAW-- 299 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT-CCS--
T ss_pred CceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc-ccc--
Confidence 001112357788876 67788877764 99999999875432211000 000
Q ss_pred cccccCCCccEEEEEEccCCC---EEEEec-CCeEEEEEccCCCCCCCCCCCc--ccc----c---------------cc
Q 013644 208 RHLIGKNNIHITGLAYSNTSE---LLISYN-DELVYLFEKNMGLGPSPLSLSP--EDL----Q---------------KR 262 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~----~---------------~~ 262 (439)
......+........+|+ .++.++ +|.++++|..++.......+.+ +.. . ..
T Consensus 300 ---d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 300 ---DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp ---CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ---cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 000111222222233554 566665 9999999998874321110000 000 0 00
Q ss_pred ccceeEeCCCCcceeeeEEeeCCCCceEEEeCC---------------------------------------------CC
Q 013644 263 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------------------------------------------CG 297 (439)
Q Consensus 263 ~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~---------------------------------------------dg 297 (439)
+......+......-..++ ++|+..++++... +|
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a-~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g 455 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMS-YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG 455 (689)
T ss_dssp SCEEESSCTTCSSCSSCCE-EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred CeeEeCCCcccccCCCcce-ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence 0000000000000112244 6777776665421 47
Q ss_pred eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 298 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 298 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.|+.||+.+++.+..+..+. ++..-.+...+.+++.++.||.++.||.+++++
T Consensus 456 ~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 456 KLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 89999999999988876543 333345556778999999999999999998875
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.24 E-value=1.8e-09 Score=92.41 Aligned_cols=203 Identities=10% Similarity=0.017 Sum_probs=128.5
Q ss_pred ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec
Q 013644 99 LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS 178 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 178 (439)
+...........|+|+++.++++...++.|..|+. +++. ..+.. ....+..+++++++ +++++...
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~-----------~~~~~~gl~~d~dG-~l~v~~~~ 105 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD-----------ATAFTNGNAVDAQQ-RLVHCEHG 105 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE-----------SCSCEEEEEECTTS-CEEEEETT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC-----------CCCccceeeECCCC-CEEEEECC
Confidence 44455667889999999878889989999999987 4442 23322 23347899999987 66666556
Q ss_pred CceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEE----ec--------------CCeEEE
Q 013644 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS----YN--------------DELVYL 240 (439)
Q Consensus 179 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~--------------d~~i~i 240 (439)
++.|.+|+.. ++... +.. .........+..++++++|+++++ +. .+.|+.
T Consensus 106 ~~~v~~~~~~-g~~~~----------~~~-~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 106 RRAITRSDAD-GQAHL----------LVG-RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp TTEEEEECTT-SCEEE----------EEC-EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred CCEEEEECCC-CCEEE----------EEe-ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEE
Confidence 6789999975 33110 000 000111234667999999998885 22 246777
Q ss_pred EEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCC------CeEEEEecCCCcee--Ee
Q 013644 241 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHLFIWKKKGGKLV--RL 312 (439)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~ 312 (439)
++..++ ....+. ... ....++ |+|+++.|+.+... +.|++|++..+... ..
T Consensus 174 ~d~~~g-----------------~~~~~~-~~~--~p~gl~-~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 232 (305)
T 3dr2_A 174 LPPDGS-----------------PLQRMA-DLD--HPNGLA-FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH 232 (305)
T ss_dssp ECSSSC-----------------CCEEEE-EES--SEEEEE-ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE
T ss_pred EcCCCC-----------------cEEEEe-cCC--CCcceE-EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE
Confidence 776554 112222 111 256778 89999977776554 78999998754311 11
Q ss_pred e-cccccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 313 M-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 313 ~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
+ .........+++.++|++.++. .+ .|.+|+..+..
T Consensus 233 ~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~ 269 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQL 269 (305)
T ss_dssp EECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCE
T ss_pred EEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCE
Confidence 1 1123345678899999965544 44 59999986543
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=5.8e-09 Score=98.94 Aligned_cols=297 Identities=9% Similarity=-0.028 Sum_probs=169.3
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCCc----ccEEEEEEeecCCCcEEEEecC------CCcEEEEEcccCcee
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL----DNIFQTRIMPFTDDRKIITSSA------DGQVRLGQIFEDGRM 94 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~~ 94 (439)
++..|+.++.|+.|..+|..+++.+.++..... ..+...-.. .+..++.++. ++.|..+|..+++.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 356788888899999999999987766532201 112211111 2345555443 689999999998876
Q ss_pred eeEEecCCC------------------------------CceEEEEEccCCCcEEEEeCCCC------------------
Q 013644 95 DTKRLGKHQ------------------------------GRVYKLAVEPGSPYIIYSCGEDG------------------ 126 (439)
Q Consensus 95 ~~~~~~~~~------------------------------~~v~~i~~~~~~~~~l~s~~~dg------------------ 126 (439)
-........ .....++++|++. +++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeee
Confidence 443332111 1113578888887 566666553
Q ss_pred -cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC--cEEEEeecCceEEEEeCcCCcccCCCCCCCCc-
Q 013644 127 -FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPV- 202 (439)
Q Consensus 127 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 202 (439)
.|..+|.++++....+....... ..... ......+....++. ..++.++.+|.++++|..+++.+.........
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~-wd~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDN-WDYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCC-SCCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred EEEEEEECCCCCEEEEEecCCCcc-ccccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 59999999998877665321100 00000 01111122222332 57889999999999999999876433211100
Q ss_pred -ccc---cc-c------------ccccCC--CccEEEEEEccCCCEEEEec-C---------------------------
Q 013644 203 -DTF---CP-R------------HLIGKN--NIHITGLAYSNTSELLISYN-D--------------------------- 235 (439)
Q Consensus 203 -~~~---~~-~------------~~~~~~--~~~i~~~~~~~~~~~l~~~~-d--------------------------- 235 (439)
..+ +. . ...... ...-..++++|++.++++.. +
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 000 00 0 000000 01112578888877776542 2
Q ss_pred ----------------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeE
Q 013644 236 ----------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 299 (439)
Q Consensus 236 ----------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i 299 (439)
+.|..||+.++ +..-.+.... ...... +...+.+++.++.||.+
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG----------------~~~W~~~~~~---~~~~g~-~~~~g~~v~~g~~dg~l 500 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQ----------------KAAWSVEHVS---PWNGGT-LTTAGNVVFQGTADGRL 500 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTT----------------EEEEEEEESS---SCCCCE-EEETTTEEEEECTTSEE
T ss_pred ccccccccccCCCCCccEEEEEeCCCC----------------cEEeecCCCC---CCcCcc-eEeCCCEEEEECCCCcE
Confidence 56777777665 2322332211 122222 34567788889999999
Q ss_pred EEEecCCCceeEeecccc-cceEEEeecCCCcE-EEEEec----------------CCeEEEeccC
Q 013644 300 FIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPM-FATCGI----------------EKTVKLWAPM 347 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~-l~s~~~----------------dg~i~iw~~~ 347 (439)
++||..+++.+..+.... ....-+.+.++|+. ++..+. .+.+.+|.+.
T Consensus 501 ~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 501 VAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred EEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 999999999998887443 22234556678874 444322 3577777765
No 231
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.22 E-value=1.1e-07 Score=92.67 Aligned_cols=293 Identities=11% Similarity=0.063 Sum_probs=178.2
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
|.++...++|++.+ |+.++.|..|+..+++........+...|.++...+ ++.+.+ ++.++-+.+|+..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88888888887655 454445888997765432211122346788888877 666555 44444488898865543211
Q ss_pred EEe-----cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 97 KRL-----GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 97 ~~~-----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
... .-....|.++...+++. +. .|+.+ -|.+||..++........ +..........|.++...+++
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~-Gl~~~~~~~~~~~~~~~~----~~~~~~l~~~~i~~i~~D~~g-- 321 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNR-LW-IGTFN-DLNIYHEGTDSFASYSSN----PVENGSLSQRSVRSIFMDSQG-- 321 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSC-EE-EEESS-CEEEEETTTTEEEEECCC----TTSTTSCSSSCEEEEEECTTS--
T ss_pred ecCCCCccccCCCeEEEEEEcCCCC-EE-EEeCC-hhheEcCCCCeEEEEecC----CCCCCCCCCCcEEEEEEeCCc--
Confidence 100 01235699999998887 33 44444 588999876653322111 000111134569999999876
Q ss_pred EEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSP 251 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~ 251 (439)
.|..|+.++-|..|+............. .........|.++...++|.+.++..++.|..|+..++.
T Consensus 322 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~---------~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~---- 388 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIRNRFKNIRNIP---------YKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR---- 388 (795)
T ss_dssp CEEEEESSSCEEEECGGGGSSEEECCCT---------TSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC----
T ss_pred CEEEEECCCCeEEeCCCcccceEEcCCC---------CCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc----
Confidence 4666777788999987654321100000 000112456999999999998887778789999876541
Q ss_pred CCCCcccccccccceeEeCC-------CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec----ccccce
Q 013644 252 LSLSPEDLQKREEPQVYSGH-------RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV----GDRHVV 320 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v 320 (439)
...+... .....|.++. ..++|+.|..|+.++-|.+|+..+++...... .+...|
T Consensus 389 -------------~~~~~~~~~~~~~~l~~~~v~~i~-~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v 454 (795)
T 4a2l_A 389 -------------FTSYTLQEDESARGIGSNNIKAVY-VDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENV 454 (795)
T ss_dssp -------------EEEECCC------CCSCSCEEEEE-EETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCE
T ss_pred -------------EEEEecCCCCcccCCCCccEEEEE-EcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCee
Confidence 1111100 1123478887 67778756667777789999988776543221 134578
Q ss_pred EEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.++...++|++.+... +.+.+|+..+++.
T Consensus 455 ~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 455 YAILPDGEGNLWLGTL--SALVRFNPEQRSF 483 (795)
T ss_dssp EEEEECSSSCEEEEES--SCEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEec--CceeEEeCCCCeE
Confidence 9999988888665543 4588888876554
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.21 E-value=6.4e-09 Score=90.59 Aligned_cols=246 Identities=10% Similarity=0.074 Sum_probs=140.7
Q ss_pred EC--CCCCEEEE-ecCCCeEEEEeCCCCc---ceeeeec------C-CcccEEEEEEeecCCCcEEEEecCC------Cc
Q 013644 22 FN--STGDFLVS-GSDDKLVIFWDWKDRR---EKFSYLS------G-HLDNIFQTRIMPFTDDRKIITSSAD------GQ 82 (439)
Q Consensus 22 ~s--~~~~~l~t-~~~dg~i~iw~~~~~~---~~~~~~~------~-h~~~v~~~~~~~~~~~~~l~s~~~d------g~ 82 (439)
++ +++++|+. +-.++.|.|+|+.+.. .+..... . -...-..+..+| ++ .++++..+ +.
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCe
Confidence 36 77877655 5677899999986541 1222221 0 112345667788 88 66666554 78
Q ss_pred EEEEEcccCceeeeEEecCCC-CceEEEEEccCCCcEEEEeC-------------------CCCcEEEEEccCCCceeeE
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQ-GRVYKLAVEPGSPYIIYSCG-------------------EDGFVQHFDLRSDSATRLF 142 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~ 142 (439)
|.+.|..+.+.+......... .--..+.|+|+++ .+++.. ...+|.+||+.+++....+
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 999999887766432222222 2234578899998 455653 3689999999988766666
Q ss_pred EeeccCCCCCCCCceeeeEEE--eecCCCCcEEEEee-----cCceEEEEeCcCCcccCCCCCCCCccccc--ccccc--
Q 013644 143 YCSSFSENSKQPMNSIRLNAI--VIDPRNPNYFAVGG-----SDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLI-- 211 (439)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~-- 211 (439)
.... .......+ +|+|++...++++- .+++|.+|....++.......+.+..... .....
T Consensus 245 ~vg~---------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 245 TLGE---------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp ESCT---------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred ecCC---------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 5421 01223344 45998854455554 67788877665432110000000000000 00000
Q ss_pred -cCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC------------CCcce
Q 013644 212 -GKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH------------RNSQT 276 (439)
Q Consensus 212 -~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 276 (439)
.+.......+.+++||++|.+++ .+.|.+||+...... +....+... .....
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~-------------~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP-------------VLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC-------------EEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-------------EEEEEEEeCCeeccccccccccCCCC
Confidence 00123577899999999998885 789999998643111 112222111 00112
Q ss_pred eeeEEeeCCCCceEEEeC
Q 013644 277 VKGVNFFGPNDEYVMSGS 294 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~ 294 (439)
...+. ++|||++|+++.
T Consensus 383 Pr~~~-lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLE-ISRDGRRVYVTN 399 (462)
T ss_dssp CCCEE-ECTTSSEEEEEC
T ss_pred CCEEE-EcCCCCEEEEEc
Confidence 45666 899999998887
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.19 E-value=3e-09 Score=92.11 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=160.3
Q ss_pred cccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 13 h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
+...+.++...++|. |..++.+ |..+|. +++..... ...........+ .+..|..++.++.|..+|.. ++
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~-~~~~~~~~~~~~----~~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF-DTKKAIVSDFTI----FEDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS-CC-----CCEEE----ETTEEEEECTTSEEEEECTT-SC
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE-ECCCCcccCceE----ECCEEEEEecCCEEEEEcCC-CC
Confidence 344567777777775 4445544 888885 54443332 122222222222 24567777888999999987 55
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
.... .......+.++...+++. ++.++.++.|..+|.. ++....+... ...+.++...+++ .
T Consensus 128 ~~~~--~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~-----------~~~~~~~~~d~~g-~- 189 (330)
T 3hxj_A 128 EKWR--FKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTN-----------DAITSAASIGKDG-T- 189 (330)
T ss_dssp EEEE--EECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECS-----------SCCCSCCEECTTC-C-
T ss_pred EEEE--EcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecC-----------CCceeeeEEcCCC-E-
Confidence 4422 333444566777777775 4567788999999988 6655444321 2235556666655 4
Q ss_pred EEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCC
Q 013644 173 FAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPL 252 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~ 252 (439)
+..++ +.|..+| .+++..... ......+.++...++|.+.++..++.+..++....
T Consensus 190 l~v~t--~~l~~~d-~~g~~~~~~---------------~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~------ 245 (330)
T 3hxj_A 190 IYFGS--DKVYAIN-PDGTEKWNF---------------YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT------ 245 (330)
T ss_dssp EEEES--SSEEEEC-TTSCEEEEE---------------CCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC------
T ss_pred EEEEe--CEEEEEC-CCCcEEEEE---------------ccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC------
Confidence 44444 7889999 554421110 11234466778888888888777888888874322
Q ss_pred CCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEE
Q 013644 253 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 332 (439)
....+...... +..+. ..+++ .|..++.+|.|..+|. +++.+..+......+.++...+++++
T Consensus 246 -----------~~~~~~~~~~~--~~~~~-~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l- 308 (330)
T 3hxj_A 246 -----------EKWRFKTGKRI--ESSPV-IGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI- 308 (330)
T ss_dssp -----------EEEEEECSSCC--CSCCE-ECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-
T ss_pred -----------EeEEeeCCCCc--cccce-EcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-
Confidence 22223222211 23333 44444 5667778889999996 67777666655566777777777765
Q ss_pred EEEecCCeEEEeccCCC
Q 013644 333 ATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 333 ~s~~~dg~i~iw~~~~~ 349 (439)
..++.+|.+++......
T Consensus 309 ~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 309 YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEECTTSCEEEEEC---
T ss_pred EEEcCCCeEEEEecccc
Confidence 45788999998776543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.18 E-value=5.7e-11 Score=104.35 Aligned_cols=258 Identities=9% Similarity=-0.019 Sum_probs=135.7
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
++..+++++.|+.|..||..+++....... +.+.+..+..++. ++++++.|+.|+.||.++++....+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~--- 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTI--- 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCH---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccC---
Confidence 678999999999999999999887744332 3455555556665 56677899999999999887654442210
Q ss_pred CCCCCCceeeeE-EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 013644 150 NSKQPMNSIRLN-AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 228 (439)
Q Consensus 150 ~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 228 (439)
...+. +..+. .+ ..+++++.++.++.||..+++.+..... +. ...++|++.
T Consensus 80 -------~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------------~~----~~~~~p~~~ 131 (369)
T 2hz6_A 80 -------PELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSS---------------AF----ADSLSPSTS 131 (369)
T ss_dssp -------HHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred -------ccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecC---------------CC----cccccccCC
Confidence 00010 01111 23 4677888899999999999875432211 00 123445666
Q ss_pred EEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC---ceEEEeCCCCeEEEEec
Q 013644 229 LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 229 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~---~~l~~~~~dg~i~iwd~ 304 (439)
.+++++ ++.|+.||..++. ....+.... ..... ++.+. ..+++++.+|.|+.||.
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~----------------~~W~~~~~~----~~~~~-~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRE----------------LRWNATYFD----YAASL-PEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSS----------------CCCEEEEEE----ECCBC-CCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EEEEEecCCEEEEEECCCCC----------------EEEeEeccc----ccCcc-ccCCccccceEEEECCCCEEEEEEC
Confidence 666665 8999999998872 222222111 11122 33322 56777888999999999
Q ss_pred CCCceeEeecccccceEEEeecCCCcEE----EEEecCCeEEEeccCCCC----C-CCCCCchhhhhhhhccccCcceEE
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMF----ATCGIEKTVKLWAPMPTD----F-PPLPDNAEKIMKANKQGREDHSRI 375 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l----~s~~~dg~i~iw~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (439)
.+|+.+..+......+....+++++... +.+ ++.++.++..+++ . ...... ..+... ...+..++
T Consensus 191 ~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~sp---~~~~g~ly 264 (369)
T 2hz6_A 191 ESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETEAK---SKLTPTLY 264 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHHHH---HHSEEEEC
T ss_pred CCCcEEEEecCCCceEEEEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccC-cccccc---ccccceEE
Confidence 9999887776433333344566666432 122 3456666664443 1 111100 111100 11234667
Q ss_pred EeCCCcEEEEEEecc
Q 013644 376 TLTPDVIMHVLRLQR 390 (439)
Q Consensus 376 ~~s~dg~v~~w~~~~ 390 (439)
.++.||.+.+++...
T Consensus 265 v~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 265 VGKYSTSLYASPSMV 279 (369)
T ss_dssp BEECSSCEECCEEEE
T ss_pred EecccCCEEecCccc
Confidence 778889999988764
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=1e-07 Score=84.16 Aligned_cols=276 Identities=10% Similarity=0.026 Sum_probs=157.2
Q ss_pred CCcEEEEecCCCcEEEEEcccCceeeeEEecCC-------CCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeE
Q 013644 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKH-------QGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLF 142 (439)
Q Consensus 70 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 142 (439)
.+..+++++.++.|..+|..+++......+... ...+.+.....++ .++.++.++.|..+|.++++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG--HVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC--EEEEEcCCCEEEEEECCCCCEEEEE
Confidence 456777788889999999988887654444321 2233222222233 4667888999999999999876555
Q ss_pred EeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEE
Q 013644 143 YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 222 (439)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 222 (439)
...... ...+ ... + ..+++++.++.|..+|..+++.+.......+.... .....+ .
T Consensus 130 ~~~~~~-------~~~p----~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~------~~~~~~----~ 185 (376)
T 3q7m_A 130 KVAGEA-------LSRP----VVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL------RGESAP----T 185 (376)
T ss_dssp ECSSCC-------CSCC----EEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCCCCC----E
T ss_pred eCCCce-------EcCC----EEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee------cCCCCc----E
Confidence 432110 0111 111 2 47778888999999999988754322211110000 000111 1
Q ss_pred EccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCc--c---eeeeEEeeCC--CCceEEEeCC
Q 013644 223 YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--Q---TVKGVNFFGP--NDEYVMSGSD 295 (439)
Q Consensus 223 ~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~v~~~~~~s~--~~~~l~~~~~ 295 (439)
.. ++.+++...++.+..+|..++. ........... . .+..+. ..| .+..++.++.
T Consensus 186 ~~-~~~v~~g~~~g~l~~~d~~tG~----------------~~w~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~v~~~~~ 247 (376)
T 3q7m_A 186 TA-FGAAVVGGDNGRVSAVLMEQGQ----------------MIWQQRISQATGSTEIDRLSDVD-TTPVVVNGVVFALAY 247 (376)
T ss_dssp EE-TTEEEECCTTTEEEEEETTTCC----------------EEEEEECCC-----------CCC-CCCEEETTEEEEECT
T ss_pred EE-CCEEEEEcCCCEEEEEECCCCc----------------EEEEEecccCCCCcccccccccC-CCcEEECCEEEEEec
Confidence 11 4444444458899999988762 22222211100 0 000000 011 3466777788
Q ss_pred CCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCC-CCCCchhhhhhhhccccCcceE
Q 013644 296 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSR 374 (439)
Q Consensus 296 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (439)
++.+..+|..+++.+..... .....+.. ++..|+.++.++.|..+|..+++.. ............ ....+..+
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~~~~l 321 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS--PVLYNGNL 321 (376)
T ss_dssp TSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC--CEEETTEE
T ss_pred CcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC--CEEECCEE
Confidence 89999999999988766542 23344444 3557777888999999999887641 111000000000 11123467
Q ss_pred EEeCCCcEEEEEEecccceee
Q 013644 375 ITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 375 ~~~s~dg~v~~w~~~~~~~~~ 395 (439)
+.++.+|.+.+++..+++...
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEE
Confidence 778889999999998887654
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=2.2e-08 Score=87.32 Aligned_cols=201 Identities=8% Similarity=0.079 Sum_probs=128.4
Q ss_pred cCCCcEEEEeCCCCcEEEEEccCC----CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC------ceE
Q 013644 113 PGSPYIIYSCGEDGFVQHFDLRSD----SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYA 182 (439)
Q Consensus 113 ~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i 182 (439)
++++++++++..+++|+++|+.+. +....+........ .....-..+...|++ +++++..+ +.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~----~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKV----SGYSRLHTVHCGPDA--IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHH----HCEEEEEEEEECSSC--EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccc----cCCCcccceeECCCe--EEEEcCCCcCCCCCCeE
Confidence 888889999999999999999765 33333310011000 011234567788976 66666555 789
Q ss_pred EEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--------------------CCeEEEEE
Q 013644 183 RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--------------------DELVYLFE 242 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------------------d~~i~i~d 242 (439)
.++|..+.+.+....... .....-..+.|+|+++.++++. .++|.+||
T Consensus 167 ~vlD~~T~~v~~~~~~~~------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDR------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEECTTTCCEEEECCSBC------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EEEECCCCeEEEEEccCC------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 999999887654433211 1112233578899999888884 78999999
Q ss_pred ccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe-eCCCCceEEEeC------CCCeEEEEecCCCce--eEee
Q 013644 243 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGS------DCGHLFIWKKKGGKL--VRLM 313 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~s~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~~ 313 (439)
+.++ +..+.+...........+.| ++|+++++++++ .+++|.+|....++. .+.+
T Consensus 235 ~~~~----------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 235 LRKR----------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp TTTT----------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred CCCC----------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence 9865 34455554322222445542 699999888776 456888776554421 1111
Q ss_pred --ccc----------------ccceEEEeecCCCcEEEEEec-CCeEEEeccC
Q 013644 314 --VGD----------------RHVVNQLEPHPHIPMFATCGI-EKTVKLWAPM 347 (439)
Q Consensus 314 --~~h----------------~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 347 (439)
... ......|.+||||++|.++.. .+.|.++++.
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 110 234678999999998776654 6899999985
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.17 E-value=9.1e-10 Score=95.44 Aligned_cols=303 Identities=13% Similarity=0.068 Sum_probs=165.5
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeE
Q 013644 18 NAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 18 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 97 (439)
.++.+..+|. |..++.++.|..|| .+++..... ......+.++...+ ++ .|..++.+ |..+|. +++....
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~~- 92 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKWR- 92 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGGG-
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEec--CC-cEEEecCc--EEEECC-CCcEEEE-
Confidence 3455555664 56677788899999 777654432 23334455566554 44 55555555 888875 4433321
Q ss_pred EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 98 RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 98 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
............+. ++ .++.++.++.|..+|.. ++........ ...+.++...+++ .+..++
T Consensus 93 -~~~~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~-----------~~~~~~~~~~~~g--~l~vgt 154 (330)
T 3hxj_A 93 -FDTKKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD-GTEKWRFKTK-----------KAIYATPIVSEDG--TIYVGS 154 (330)
T ss_dssp -SCC-----CCEEEE-TT--EEEEECTTSEEEEECTT-SCEEEEEECS-----------SCCCSCCEECTTS--CEEEEC
T ss_pred -EECCCCcccCceEE-CC--EEEEEecCCEEEEEcCC-CCEEEEEcCC-----------CceeeeeEEcCCC--EEEEEc
Confidence 11111222223333 44 46678888999999988 6654433321 1124455666654 466677
Q ss_pred cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcc
Q 013644 178 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPE 257 (439)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~ 257 (439)
.++.|..+|.. ++..... ......+.++...+++.++++. +.+..+| .++
T Consensus 155 ~~~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g----------- 204 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRF---------------KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG----------- 204 (330)
T ss_dssp TTSEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS-----------
T ss_pred CCCEEEEECCC-CCEeEEE---------------ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC-----------
Confidence 88999999987 5422111 1112345556677788877666 8899998 443
Q ss_pred cccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEec
Q 013644 258 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 337 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 337 (439)
.....+.... ..+.++. ..++|. |..++.++.|..++. +++.+..+......+..+.+.+++ .|..++.
T Consensus 205 -----~~~~~~~~~~--~~~~~~~-~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~ 273 (330)
T 3hxj_A 205 -----TEKWNFYAGY--WTVTRPA-ISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSY 273 (330)
T ss_dssp -----CEEEEECCSS--CCCSCCE-ECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECT
T ss_pred -----cEEEEEccCC--cceeceE-ECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecC
Confidence 1222222222 2356666 566665 445566788888874 566666555444444556665565 4556777
Q ss_pred CCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 338 EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 338 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
+|.|..++............ ....... .......+..++.+|.+.+...+..
T Consensus 274 ~ggl~~~d~~g~~~~~~~~~-~~~~~~~-~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 274 DGHLYAINPDGTEKWNFETG-SWIIATP-VIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp TCEEEEECTTSCEEEEEECS-SCCCSCC-EECTTCCEEEECTTSCEEEEEC---
T ss_pred CCCEEEECCCCcEEEEEEcC-Cccccce-EEcCCCEEEEEcCCCeEEEEecccc
Confidence 88899998643222111111 1111111 1112234556777787777665444
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=1.2e-08 Score=92.15 Aligned_cols=258 Identities=10% Similarity=-0.017 Sum_probs=147.9
Q ss_pred CCcEEEEecC-CCcEEEEEcccCceeeeEEecCCCCceEEEEE-c-cCCCcEEEEe-----------------CCCCcEE
Q 013644 70 DDRKIITSSA-DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAV-E-PGSPYIIYSC-----------------GEDGFVQ 129 (439)
Q Consensus 70 ~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~-~-~~~~~~l~s~-----------------~~dg~i~ 129 (439)
||++|+.... ++.|.+.|+.+.+......+.. ......+++ + |+++++++++ -.++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 6777776554 5679999999887765444442 245778887 5 8999776553 2346899
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC---------------ceEEEEeCcCCcccC
Q 013644 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---------------EYARVYDIRKCHWYS 194 (439)
Q Consensus 130 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~ 194 (439)
++|..+.+....+.... ....++++|++ .++++.+.+ ..+.++|........
T Consensus 179 vID~~t~~v~~qI~Vgg------------~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG------------NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp EEETTTTEEEEEEEESS------------CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred EEECCCCeEEEEEEeCC------------CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 99999887777665421 12446788887 555555533 234444433211000
Q ss_pred CCCC---CCCcccc--------c-ccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 195 PISS---DTPVDTF--------C-PRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 195 ~~~~---~~~~~~~--------~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
.... -..+..+ . ...+ . -.....++.++|||+++++++ +.+|.++|+.+........+.+
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~I-p-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~---- 319 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYI-P-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP---- 319 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEE-E-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG----
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEE-e-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc----
Confidence 0000 0000000 0 0000 0 122456789999999888875 8899999998531000000000
Q ss_pred ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCC----------CceeEeecccccc-----eEEEee
Q 013644 261 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----------GKLVRLMVGDRHV-----VNQLEP 325 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~-----v~~~~~ 325 (439)
. ......-........++ |+++|...++.-.|++|.+||+.+ .+.+..+..|-.+ -..+.+
T Consensus 320 --~-~~v~~~v~vG~gP~h~a-F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 320 --R-SAVVAEPELGLGPLHTA-FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp --G-GGEEECCBCCSCEEEEE-ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred --c-cceEEEcCCCCCcceEE-ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 0 00111111112366777 899995455667799999999887 4556666555332 123466
Q ss_pred cCCCcEEEEEec---CCe----------EEEeccCCCCC
Q 013644 326 HPHIPMFATCGI---EKT----------VKLWAPMPTDF 351 (439)
Q Consensus 326 s~~~~~l~s~~~---dg~----------i~iw~~~~~~~ 351 (439)
+|||++|+++.. |.. -.++|+.++++
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 899999988753 332 16778765553
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.11 E-value=1.1e-08 Score=92.46 Aligned_cols=253 Identities=10% Similarity=0.005 Sum_probs=150.7
Q ss_pred CCCEEEEec-CCCeEEEEeCCCCcceeeeecCCcccEEEEEE-e-ecCCCcEEEEec------------------CCCcE
Q 013644 25 TGDFLVSGS-DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI-M-PFTDDRKIITSS------------------ADGQV 83 (439)
Q Consensus 25 ~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~~l~s~~------------------~dg~i 83 (439)
||++|.... .++.|.+.|+.+.+....+-.........+++ . | ++.++++++ .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC--CCcEEEEecccccccCCCCcccccccccCceE
Confidence 788776654 45679999999987554322233345778887 4 7 999998884 24678
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-------------------------------------C
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-------------------------------------G 126 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-------------------------------------g 126 (439)
.+.|..+.+........+ ....++++|+|+++++++... +
T Consensus 178 tvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 999998776554433333 346678999999766665433 1
Q ss_pred cEEEEEccC--CCc-eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCccc--CCCCCCCC
Q 013644 127 FVQHFDLRS--DSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--SPISSDTP 201 (439)
Q Consensus 127 ~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~ 201 (439)
.|.+.|.++ ++. +..+.. .....++.++|+|...++++..+..|.++|+.+.+.. ..+..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv------------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~--- 319 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI------------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP--- 319 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE------------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG---
T ss_pred cEEEEeCcccCCceeEEEEec------------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc---
Confidence 355555555 322 223322 1234678999999767777778899999999965310 00000
Q ss_pred cccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcce---
Q 013644 202 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT--- 276 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 276 (439)
....... ..-......++|+|+| .+.+. . ++.|..||+....... .. -...+.+..+..|-.+..
T Consensus 320 --~~~v~~~-v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~----~g--~~~~~vi~kidV~yqpGh~~~ 389 (595)
T 1fwx_A 320 --RSAVVAE-PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAY----AG--EKVDPIKDKLDVHYQPGHLKT 389 (595)
T ss_dssp --GGGEEEC-CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHH----HT--CSCCCEEEEEECSSCEEEEEE
T ss_pred --ccceEEE-cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhh----cc--cccceeEEEeeccccccccee
Confidence 0000001 1224567889999999 55544 4 9999999987620000 00 000134445554433211
Q ss_pred eeeEEeeCCCCceEEEeCC---CCe----------EEEEecCCCc
Q 013644 277 VKGVNFFGPNDEYVMSGSD---CGH----------LFIWKKKGGK 308 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~---dg~----------i~iwd~~~~~ 308 (439)
-.++. .+|||++|++... |.. -.++|+..++
T Consensus 390 ~~g~t-~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 390 VMGET-LDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTTTS-TTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceE-eCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 11223 6899999988754 332 2788886544
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.11 E-value=3.6e-07 Score=89.07 Aligned_cols=292 Identities=9% Similarity=0.055 Sum_probs=176.0
Q ss_pred eEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCC-ccc-EEEEEEeecCCCcEEEEecCCCcEEEEEcccCcee
Q 013644 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGH-LDN-IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h-~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 94 (439)
|.++...++|.+.+... +.|..|+..+++.. .+...+ ... |.++...+ ++.+.+ ++.++.|..|+..+++..
T Consensus 133 i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~~~~ 206 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTP--EGLIMFDIKESKFI-DDSFSTAMHKTIASTLYRQ--GDQIYI-GTSTDGLYTYSITQKTFE 206 (795)
T ss_dssp CCEEEEEETTEEEEEET--TEEEEEETTTTEEE-CSSSCHHHHTCCEEEEEEE--TTEEEE-EESSSCEEEEETTTCCEE
T ss_pred EEEEEECCCCCEEEEEC--CceEEEECCCCEEE-eccCCCCCCcceEEEEECC--CCCEEE-EECCCCEEEEeCCCCeEE
Confidence 88888888887666543 45888997665321 111111 123 88888887 665555 555556888888665433
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
... .......|.++...+++. +. .++.++-|..||..+++....... ...........|.++...+++ .|.
T Consensus 207 ~~~-~~~~~~~i~~i~~d~~g~-lw-igt~~~Gl~~~~~~~~~~~~~~~~----~~~~~~l~~~~i~~i~~d~~g--~lW 277 (795)
T 4a2l_A 207 KVI-PILGTKQIQAILQQSPTR-IW-VATEGAGLFLINPKTKEIKNYLHS----PSNPKSISSNYIRSLAMDSQN--RLW 277 (795)
T ss_dssp ECC-----CCCEEEEEEEETTE-EE-EEEBSSCEEEEETTTTEEEEECCC----TTCTTSCSCSBEEEEEECTTS--CEE
T ss_pred Eec-CCCCCCeeEEEEEcCCCC-EE-EEECCCCeEEEeCCCCeEEEeecC----CCCccccCCCeEEEEEEcCCC--CEE
Confidence 211 112346788888888875 44 454444588999877654322111 000011124568999998876 345
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCC
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSL 254 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~ 254 (439)
.|+.+ -|.+||..+.+......... ....-....|.++...++|.+.++..++.|..|+.....
T Consensus 278 igt~~-Gl~~~~~~~~~~~~~~~~~~--------~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~------- 341 (795)
T 4a2l_A 278 IGTFN-DLNIYHEGTDSFASYSSNPV--------ENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR------- 341 (795)
T ss_dssp EEESS-CEEEEETTTTEEEEECCCTT--------STTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS-------
T ss_pred EEeCC-hhheEcCCCCeEEEEecCCC--------CCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc-------
Confidence 55555 58889977654221100000 000123456999999999998887778889999875431
Q ss_pred CcccccccccceeEeC-----CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecc--------cccceE
Q 013644 255 SPEDLQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--------DRHVVN 321 (439)
Q Consensus 255 ~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~ 321 (439)
...+.. ......|.++. ..++|++- .|+.++-|..|+..+++....... ....|.
T Consensus 342 ----------~~~~~~~~~~~~l~~~~V~~i~-~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 342 ----------FKNIRNIPYKNSLSDNVVSCIV-EDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp ----------SEEECCCTTSSSCSCSSEEEEE-ECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred ----------ceEEcCCCCCCCCCCCeeEEEE-ECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 111111 11122478887 67776644 566777799999887654332211 235789
Q ss_pred EEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
++...+++++|..|+.++.|..|+..+++.
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 999988888456677777899999887654
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.11 E-value=2.3e-07 Score=75.92 Aligned_cols=223 Identities=6% Similarity=-0.056 Sum_probs=141.4
Q ss_pred ccceeeeeecccc--ceEEEEECCCCCEEEEecC--CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec
Q 013644 3 RINLCGKLHGHKG--CVNAVEFNSTGDFLVSGSD--DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS 78 (439)
Q Consensus 3 ~~~~~~~l~~h~~--~I~~~~~s~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 78 (439)
++++++++. |.. ....++|+|++.+.++.+. ++.|++.|+.+++.+..+..+.......+++. ++...++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEe
Confidence 456777775 443 3689999998866666553 57999999999987666532222223345554 344445556
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.++.+.++|..+.+.+...... ... ...++++++.++++- .++.|.++|..+.+....+....... .-.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~---g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~------p~~ 152 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD---GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGH------RVI 152 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS---CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTE------ECC
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC---eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCc------ccc
Confidence 6899999999887766443333 111 234566888766555 68899999999998887776532110 011
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccc--ccccCCCccEEEEEEccCCCE-EEEec-
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR--HLIGKNNIHITGLAYSNTSEL-LISYN- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~-l~~~~- 234 (439)
.++.+.|. ++ .+++....++.|.+.|..+++.+..+..... .+. ..........+.++|+|+++. ++++.
T Consensus 153 ~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~----~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 153 RLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNL----RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHH----HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCc----ccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 35677777 44 6666666688999999999886543322100 000 000111245689999999864 45554
Q ss_pred CCeEEEEEccCC
Q 013644 235 DELVYLFEKNMG 246 (439)
Q Consensus 235 d~~i~i~d~~~~ 246 (439)
.+.+...++...
T Consensus 227 ~~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 WPKLFEIKLHLV 238 (266)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEecc
Confidence 788888887653
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.07 E-value=7.9e-08 Score=77.59 Aligned_cols=218 Identities=13% Similarity=0.036 Sum_probs=134.5
Q ss_pred ccceeeeeeccccc--eEEEEECCCCCEEEEecCCC--eEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec
Q 013644 3 RINLCGKLHGHKGC--VNAVEFNSTGDFLVSGSDDK--LVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS 78 (439)
Q Consensus 3 ~~~~~~~l~~h~~~--I~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 78 (439)
.+++++++. |... ...|.|+ ++.+..+++.+| .|+++|+.+++.+........---..++.. ++...+..-
T Consensus 30 ~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~---g~~ly~ltw 104 (262)
T 3nol_A 30 DYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW---KDKIVGLTW 104 (262)
T ss_dssp EEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEES
T ss_pred ceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe---CCEEEEEEe
Confidence 456777774 4433 4789998 677777777766 899999999987666532221112234443 334444445
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.++.+.++|..+.+.+......+ ....++++++.++++- .++.|.++|..+.+....+....... .-.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~-----eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~------~~~ 172 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDG-----EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGE------ELP 172 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS-----CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTE------ECC
T ss_pred eCCEEEEEECccCcEEEEEECCC-----CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCc------ccc
Confidence 68899999999888775544433 2233346677665544 47889999999998888776532110 012
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeE
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 238 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i 238 (439)
.++.+.|. ++ .+++..-.+..|.+.|..+++.+..+........... ......-.+.|+++|+++.|.+.+..-=
T Consensus 173 ~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~---~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 173 ELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP---LPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS---CCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc---ccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 34567776 34 6666665788999999999987665443221110000 0112345789999998866655554433
Q ss_pred EEEE
Q 013644 239 YLFE 242 (439)
Q Consensus 239 ~i~d 242 (439)
++|.
T Consensus 248 ~~~e 251 (262)
T 3nol_A 248 KVFE 251 (262)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 3443
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.06 E-value=3.1e-07 Score=79.05 Aligned_cols=159 Identities=9% Similarity=0.033 Sum_probs=91.2
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecC-------------------CcccEEEEEEeecCCCcEEE
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSG-------------------HLDNIFQTRIMPFTDDRKII 75 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~ 75 (439)
....++++.++|+++.++..++.|..|+..++... .+... .......+++.+ ++..|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence 45678899999997888888899999998765322 11100 113578889885 455566
Q ss_pred EecCCCcEEEEEcccCceeeeE-EecC-CCCceEEEEEcc-CCCcEEEEeCC-----------------CCcEEEEEccC
Q 013644 76 TSSADGQVRLGQIFEDGRMDTK-RLGK-HQGRVYKLAVEP-GSPYIIYSCGE-----------------DGFVQHFDLRS 135 (439)
Q Consensus 76 s~~~dg~i~iw~~~~~~~~~~~-~~~~-~~~~v~~i~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~ 135 (439)
.+...+.|..++..++...... ...+ .....+.+++.+ +|. ++++... ++.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 5555555888886543221111 1111 113467899999 886 4544322 35567777655
Q ss_pred CCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 136 DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
++....... ....+.++++|++..++++-...+.|.+|++..
T Consensus 175 ~~~~~~~~~------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 175 KETTLLLKE------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TEEEEEEEE------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CEEEEeccC------------CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 543222211 112345777776633444445556777777654
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.05 E-value=7.3e-07 Score=74.45 Aligned_cols=231 Identities=8% Similarity=0.013 Sum_probs=138.1
Q ss_pred EEEEecCCCcEEEEEcccCceee---eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCC
Q 013644 73 KIITSSADGQVRLGQIFEDGRMD---TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSE 149 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 149 (439)
+|+.+.. +.|+.+++....... ...+......+..+++++++..++++-...+.|..+++........+. .
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~---- 76 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-Q---- 76 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-T----
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-C----
Confidence 4444443 478888876543210 011111224578999999877778788888999999987655332221 0
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
.......++++|+++.++++-...+.|.++++..... ..+..........++++|++..
T Consensus 77 ------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 77 ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---------------RVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp ------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEETTTTE
T ss_pred ------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---------------EEEEECCCCCccEEEEeeCCCE
Confidence 1124688999997656777777778999999864321 0011111245688999996544
Q ss_pred -EEEec---CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEec
Q 013644 230 -LISYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK 304 (439)
Q Consensus 230 -l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~ 304 (439)
+++.. .+.|..+++... ....+... .......++ ++++++.| ++-...+.|.+++.
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~-----------------~~~~~~~~-~~~~P~gia-~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGT-----------------NRRILAQD-NLGLPNGLT-FDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSC-----------------CCEEEECT-TCSCEEEEE-EETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCcEEEEEecCCC-----------------CcEEEEEC-CCCCCcEEE-EcCCCCEEEEEECCCCEEEEEec
Confidence 44432 358888887542 11222111 112367788 78876655 55556789999998
Q ss_pred CCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
........+.+ ......++.. .+.++++....+.|..++..+++.
T Consensus 197 ~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 197 AQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp TEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence 76544333332 2234566664 344555555668999999876653
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=8.9e-11 Score=103.10 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=98.1
Q ss_pred EEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCC
Q 013644 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS 197 (439)
Q Consensus 118 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 197 (439)
.+++++.|+.|+.||..+++....+.. . .+.+..+.+++ .++++++.|+.|+.||..+++.+....
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------------~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE-D------------PVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-C------------CSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC-C------------CceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeee
Confidence 577889999999999999998776653 1 12223333444 677888899999999998876432221
Q ss_pred CCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCccee
Q 013644 198 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 277 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (439)
...+ ... ...+ .+..++.+++.+.++.++.||..++ +....+..+..
T Consensus 77 ~~~~-------~~~--~~sp----~~~~~~~v~~g~~dg~v~a~D~~tG----------------~~~w~~~~~~~---- 123 (369)
T 2hz6_A 77 FTIP-------ELV--QASP----CRSSDGILYMGKKQDIWYVIDLLTG----------------EKQQTLSSAFA---- 123 (369)
T ss_dssp CCHH-------HHH--TTCS----CC-----CCCCEEEEEEEEECCC---------------------------------
T ss_pred ccCc-------ccc--ccCc----eEecCCEEEEEeCCCEEEEEECCCC----------------cEEEEecCCCc----
Confidence 1000 000 0011 1112344444445899999999887 23333332221
Q ss_pred eeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCC---cEEEEEecCCeEEEeccCCCCC
Q 013644 278 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 278 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.. ++|++..+++++.++.|+.||..+|+.+..+..+. .....+.++. ..+++++.||.|..||..+++.
T Consensus 124 --~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 124 --DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred --cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 12 45688899999999999999999998876654321 2233444432 4577788999999999987764
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=6.5e-08 Score=79.15 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=131.2
Q ss_pred ceEEEEEccCCCcEEEEeCC--CCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceE
Q 013644 105 RVYKLAVEPGSPYIIYSCGE--DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA 182 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 182 (439)
....+.|++++ .++++.+. ++.|+++|+.+++.+..+..... .....+++. +..++++.-.++.+
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~----------~fgeGi~~~--g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS----------YFGEGLTLL--NEKLYQVVWLKNIG 88 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT----------CCEEEEEEE--TTEEEEEETTCSEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC----------cceEEEEEe--CCEEEEEEecCCEE
Confidence 35789999986 45655553 68999999999998887654221 112245554 33666666678999
Q ss_pred EEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 183 RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
.++|..+.+.+..+.. +... ...++++|+.++.+. ++.|.++|..+.
T Consensus 89 ~viD~~t~~v~~~i~~--------------g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~--------------- 136 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTH--------------QMKD---GWGLATDGKILYGSDGTSILYEIDPHTF--------------- 136 (266)
T ss_dssp EEEETTTTEEEEEEEC--------------CSSS---CCEEEECSSSEEEECSSSEEEEECTTTC---------------
T ss_pred EEEECCCCcEEEEEEC--------------CCCC---eEEEEECCCEEEEECCCCeEEEEECCCC---------------
Confidence 9999998764332211 1011 123556776666664 889999998775
Q ss_pred cccceeEeCCCCcc---eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc-------------cceEEEee
Q 013644 262 REEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVVNQLEP 325 (439)
Q Consensus 262 ~~~~~~~~~~~~~~---~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------------~~v~~~~~ 325 (439)
+....+....... .+..+. +. +|+..+....++.|.+.|..+++.+..+.... ...+.|+|
T Consensus 137 -~v~~~I~Vg~~~~p~~~~nele-~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~ 213 (266)
T 2iwa_A 137 -KLIKKHNVKYNGHRVIRLNELE-YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW 213 (266)
T ss_dssp -CEEEEEECEETTEECCCEEEEE-EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred -cEEEEEEECCCCcccccceeEE-EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEE
Confidence 3334433221111 255677 44 67666666678899999999999988775321 25689999
Q ss_pred cCCCc-EEEEEecCCeEEEeccCCCC
Q 013644 326 HPHIP-MFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 326 s~~~~-~l~s~~~dg~i~iw~~~~~~ 350 (439)
+|+++ +++++...+.+.+-++....
T Consensus 214 ~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 214 DQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred cCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99986 56666678899988886543
No 247
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.98 E-value=1e-05 Score=70.24 Aligned_cols=247 Identities=9% Similarity=-0.001 Sum_probs=149.5
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDG 92 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~ 92 (439)
.+..+|.+..+++ +|+.+. ...|+..++..... .... ........++|.+ .+..|+ +-...+.|..+++....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~-~~~~-~~~~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-TLLL-NNLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCE-EEEE-CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCee-EEee-cCCCceEEEEEec--cccEEEEEeccCCceEEEecCCCC
Confidence 3455676666644 444443 34588888765432 2222 2334578999997 555555 44567889989886554
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
... .+.........+++.+.+..++++-...+.|.+.++........+ .. .-.....++++|.++.+
T Consensus 107 ~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~----------~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 107 VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQ----------SLEKPRAIALHPMEGTI 173 (349)
T ss_dssp CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CT----------TCSCEEEEEEETTTTEE
T ss_pred ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-eC----------CCCCcceEEEecCcCeE
Confidence 322 222233456789999876667777777889999998755432222 11 12236889999977667
Q ss_pred EEEeecC-ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCC
Q 013644 173 FAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGP 249 (439)
Q Consensus 173 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~ 249 (439)
+++-... +.|..+++..... ..+....-.....++++|++..|..+. .+.|..+++...
T Consensus 174 y~td~~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--- 235 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--- 235 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSC---------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---
T ss_pred EEeccCCCCEEEEEeCCCCCc---------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---
Confidence 7766555 7888888775321 011112234578999998776555553 778999998643
Q ss_pred CCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 250 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
.....+..... ...+++ + ..+.+.++-...+.|..++..+|+....+.
T Consensus 236 -------------~~~~~~~~~~~--~P~gia-v-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 236 -------------HRKAVISQGLP--HPFAIT-V-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp -------------SCEEEECSSCS--SEEEEE-E-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -------------ceEEEEeCCCC--CceEEE-E-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 11111222111 256666 4 345666666667888888866666555544
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.96 E-value=9.6e-06 Score=69.09 Aligned_cols=124 Identities=6% Similarity=-0.053 Sum_probs=76.5
Q ss_pred ceeeeeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC--c
Q 013644 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG--Q 82 (439)
Q Consensus 5 ~~~~~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~ 82 (439)
+++..|... .....++|+++|+++++-..++.|..||..... . ... ........+++.+ +++++++..... .
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~-~~~-~~~~~p~gia~~~--dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q-IHA-TVEGKVSGLAFTS--NGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E-EEE-ECSSEEEEEEECT--TSCEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E-EEE-eCCCCceeEEEcC--CCcEEEEeccCCcce
Confidence 344555432 457789999999988877778999999976542 2 222 2234688999998 888666654332 3
Q ss_pred EEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC
Q 013644 83 VRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 83 i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 136 (439)
|..++..+++......+. .......++..+++ .++++-..++.|+.+|...+
T Consensus 97 v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred EEEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCC
Confidence 666666665543222222 22233455555544 35555556788888887653
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1e-05 Score=78.65 Aligned_cols=292 Identities=7% Similarity=0.050 Sum_probs=172.2
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeec-------CCcccEEEEEEeecCCCcEEEEecCCCcEEEEE
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLS-------GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQ 87 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~ 87 (439)
..|.++...++|.+.+.. .. -+.+||..++... .+.. -....|.++...+ ++. |..|+..+-|.+++
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~--~g~-lWigt~~~Gl~~~~ 284 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFT-NFHNNPGNIHGALSSYIFSIKQLK--DNK-LWIATELNGIMILD 284 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEE-C-----------CCCCEEEEEECT--TSE-EEEEESSSCEEEEE
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEE-EEEcCCCccccccCceEEEEEECC--CCC-EEEEeCCCCeEEEC
Confidence 468899988888766544 34 5888997665322 1111 1235688888775 554 55566645688888
Q ss_pred cccCceeeeEE-------e-----cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCC
Q 013644 88 IFEDGRMDTKR-------L-----GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 88 ~~~~~~~~~~~-------~-----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 155 (439)
..+........ . .-....|.++...+++. |..|+.++-|..++............... ......
T Consensus 285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~--~~~~~l 360 (781)
T 3v9f_A 285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQ--MNESSL 360 (781)
T ss_dssp TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----C--CCSSCC
T ss_pred CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccc--cccCCC
Confidence 86554321111 0 11245789999998886 44666677788898776543322111000 000111
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecC
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 235 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d 235 (439)
....|.++...+++ .|..|+.++-|..||..++....... ........|.++...+++.+.++..+
T Consensus 361 ~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~------------~~~~~~~~v~~i~~d~~g~lWigt~~ 426 (781)
T 3v9f_A 361 SNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKE------------NRELLSNSVLCSLKDSEGNLWFGTYL 426 (781)
T ss_dssp SSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETT
T ss_pred CCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccC------------CCCCCCcceEEEEECCCCCEEEEecc
Confidence 23458999988865 46667766778899987643211100 00123456899999989988887667
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeC-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
+.+..++..++. ...+.. ......|.++. ..++|++.+.. . +-|..|+..+++......
T Consensus 427 ~Gl~~~~~~~~~-----------------~~~~~~~~~~~~~v~~i~-~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 427 GNISYYNTRLKK-----------------FQIIELEKNELLDVRVFY-EDKNKKIWIGT-H-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEEEECSSSCE-----------------EEECCSTTTCCCCEEEEE-ECTTSEEEEEE-T-TEEEEEESSSSSCCEEEC
T ss_pred CCEEEEcCCCCc-----------------EEEeccCCCCCCeEEEEE-ECCCCCEEEEE-C-CceEEEeCCCCeEEeccc
Confidence 789999876541 111111 11123477877 67777755544 4 568899988765443322
Q ss_pred cc-----ccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 315 GD-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 315 ~h-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
.. ...|.++...++|.+.+.. .++.+..|+..+++.
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLV 527 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeE
Confidence 11 3578999998888866544 434477788766543
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=5e-07 Score=85.68 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=154.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCc---ccEEEEEEeecCCCcEEEEecC------CCcEEEEEcccCceeee
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL---DNIFQTRIMPFTDDRKIITSSA------DGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~ 96 (439)
+..++.++.|+.|..+|..+++.+-+...... ..+.+.-... ++ .++.+.. +|.|..+|..+++.+-.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 45677788899999999999987765432211 1111111111 34 4444432 58999999999887654
Q ss_pred EEecCCC-----------------------------CceEEEEEccCCCcEEEEeCCCC-------------------cE
Q 013644 97 KRLGKHQ-----------------------------GRVYKLAVEPGSPYIIYSCGEDG-------------------FV 128 (439)
Q Consensus 97 ~~~~~~~-----------------------------~~v~~i~~~~~~~~~l~s~~~dg-------------------~i 128 (439)
....... .....+++.|+.. +++.++.++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 4321110 1112467888776 566777665 49
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC--cEEEEeecCceEEEEeCcCCcccCCCCCCC------
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDT------ 200 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------ 200 (439)
..+|.++++....+....................+.+ ++. ..++.++.+|.++++|..+++.+.......
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence 9999999998776654211000000000111222333 331 368899999999999999998763211110
Q ss_pred -------Cccccccc------ccccCC--CccEEEEEEccCCCEEEEec-------------------------------
Q 013644 201 -------PVDTFCPR------HLIGKN--NIHITGLAYSNTSELLISYN------------------------------- 234 (439)
Q Consensus 201 -------~~~~~~~~------~~~~~~--~~~i~~~~~~~~~~~l~~~~------------------------------- 234 (439)
++...... ...... ...-..++++|+..++....
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence 00000000 000000 00111256777655544311
Q ss_pred ------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc
Q 013644 235 ------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308 (439)
Q Consensus 235 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 308 (439)
++.|..||+.++ +..-....... ..... +...+.+++.++.||.++.||.++++
T Consensus 431 ~p~~~~~g~l~A~D~~tG----------------~~~W~~~~~~~---~~~~~-~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 431 VPAAVVSGALLAWDPVKQ----------------KAAWKVPYPTH---WNGGT-LSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCGGGCEEEEEEEETTTT----------------EEEEEEEESSS---CCCCE-EEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCccceEEEEeCCCC----------------cEEEEccCCCC---CcCce-eEeCCCEEEEECCcccchhhhhhcCh
Confidence 266777777665 22222222211 11111 23467888889999999999999999
Q ss_pred eeEeecccccce-EEEeecCCCc-EEEEEe
Q 013644 309 LVRLMVGDRHVV-NQLEPHPHIP-MFATCG 336 (439)
Q Consensus 309 ~~~~~~~h~~~v-~~~~~s~~~~-~l~s~~ 336 (439)
.+..+....... .-+.+..+|+ +++.++
T Consensus 491 ~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 491 ALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 998886543211 2233345666 455444
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.1e-05 Score=78.38 Aligned_cols=288 Identities=8% Similarity=-0.011 Sum_probs=172.0
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeee-------------cCCcccEEEEEEeecCCCcEEEEecCC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYL-------------SGHLDNIFQTRIMPFTDDRKIITSSAD 80 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~d 80 (439)
...|.++...++|.+.+ |+..+-|.+++..+........ .-....|.++...+ ++. |..|+.+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence 35689999988887544 5553558888877654211100 11245688888876 554 5566667
Q ss_pred CcEEEEEcccCceeeeEEe-------cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCC
Q 013644 81 GQVRLGQIFEDGRMDTKRL-------GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 153 (439)
+-|..++............ .-....|.++...+++. |..|+.++-|..|+..++....... ..
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~-~~------- 402 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKE-NR------- 402 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC------------
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccC-CC-------
Confidence 7788888765432211100 01235689999888886 4456656668899876543322110 00
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 233 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 233 (439)
......|.++...+++ .|..|+.++.|..++..+++.... ... ......|.++...+++.+.++.
T Consensus 403 ~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~----------~~~---~~~~~~v~~i~~d~~g~lwigt 467 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQII----------ELE---KNELLDVRVFYEDKNKKIWIGT 467 (781)
T ss_dssp -CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEEC----------CST---TTCCCCEEEEEECTTSEEEEEE
T ss_pred CCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEe----------ccC---CCCCCeEEEEEECCCCCEEEEE
Confidence 1124568899888765 455577767789999876542111 000 1134568899999888877766
Q ss_pred cCCeEEEEEccCCCCCCCCCCCcccccccccceeEeC-C---CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce
Q 013644 234 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-H---RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 234 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 309 (439)
. +.+..|+..++. ...+.. . .....+.++. ..++|++.+..... -+..|+..+++.
T Consensus 468 ~-~Gl~~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~i~-~d~~g~lWigt~~~-Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 468 H-AGVFVIDLASKK-----------------VIHHYDTSNSQLLENFVRSIA-QDSEGRFWIGTFGG-GVGIYTPDMQLV 527 (781)
T ss_dssp T-TEEEEEESSSSS-----------------CCEEECTTTSSCSCSCEEEEE-ECTTCCEEEEESSS-CEEEECTTCCEE
T ss_pred C-CceEEEeCCCCe-----------------EEecccCcccccccceeEEEE-EcCCCCEEEEEcCC-CEEEEeCCCCeE
Confidence 6 679999977641 111111 0 0113478887 67777766544334 477788776554
Q ss_pred eEeecc---cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 310 VRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 310 ~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
...... ....|.++...++|.+.++.. +|.|..|+..+++.
T Consensus 528 ~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 528 RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 332211 235789999988888665543 66558899877654
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.94 E-value=6.4e-06 Score=72.55 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=147.6
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCcee
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDGRM 94 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~ 94 (439)
.-+|.+..+.+ +|+.+. ...|+..++...... ... ........++|.+ .+..|+ +-...+.|..+++......
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~-~~~-~~~~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT-LLL-NNLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCE-EEE-CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEE-EEe-cCCCccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 34455555533 444443 356888888765432 222 2334578999997 555554 5456788999998655432
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
. .+.........+++.+.+..++++-...+.|.+.++........+. . .......++++|.++.+++
T Consensus 152 ~--~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~----------~l~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 152 E--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q----------SLEKPRAIALHPMEGTIYW 218 (386)
T ss_dssp E--EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-S----------SCSCEEEEEEETTTTEEEE
T ss_pred E--EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-C----------CCCCCcEEEEEcCCCeEEE
Confidence 2 1222334557889998766677777778889888877544322221 1 1223688999997766666
Q ss_pred EeecC-ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCC
Q 013644 175 VGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSP 251 (439)
Q Consensus 175 ~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~ 251 (439)
+-... +.|..+++..... ..+....-.....|+++|++..|..+ . .+.|..+++...
T Consensus 219 td~~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~----- 278 (386)
T 3v65_B 219 TDWGNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS----- 278 (386)
T ss_dssp EECSSSCEEEEEETTSCSC---------------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-----
T ss_pred eccCCCCEEEEEeCCCCCc---------------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-----
Confidence 65555 7888888765321 11112223457889999876655555 3 778999987643
Q ss_pred CCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
.....+.... ....+++ + ..+.++++-...+.|..++..+++.+..+.
T Consensus 279 -----------~~~~~~~~~~--~~P~gia-v-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 279 -----------HRKAVISQGL--PHPFAIT-V-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp -----------SCEEEECSSC--SSEEEEE-E-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -----------eeEEEEECCC--CCceEEE-E-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 1111122111 1256666 4 345666666777889999877776665554
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=2.2e-07 Score=88.17 Aligned_cols=310 Identities=11% Similarity=0.064 Sum_probs=165.8
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcc---------cE-EEEEEeecCCCcEEEEecCCCcEEEEEcccCceee
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLD---------NI-FQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD 95 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~---------~v-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 95 (439)
+..++.++.++.|.-+|..+++.+-++-..... .+ ..+.+ .+..++.++.|+.|..+|..+++.+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 445666777889999999999876654211100 00 11222 35577888889999999999998775
Q ss_pred eEEecCCC--CceEE-EEEccCCCcEEEEeCC------CCcEEEEEccCCCceeeEEeeccCCCCCCC------------
Q 013644 96 TKRLGKHQ--GRVYK-LAVEPGSPYIIYSCGE------DGFVQHFDLRSDSATRLFYCSSFSENSKQP------------ 154 (439)
Q Consensus 96 ~~~~~~~~--~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------ 154 (439)
........ ..+.+ ... .++ .++.+.. +|.|+.+|.++++.+..+......+.....
T Consensus 142 ~~~~~~~~~~~~~~~~P~v-~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV-VKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE-ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeccCCCCCcceecCCCEE-ECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 54442111 11111 111 133 3444432 589999999999988776532111100000
Q ss_pred --------CceeeeEEEeecCCCCcEEEEeecCc-------------------eEEEEeCcCCcccCCCCCCCCcccccc
Q 013644 155 --------MNSIRLNAIVIDPRNPNYFAVGGSDE-------------------YARVYDIRKCHWYSPISSDTPVDTFCP 207 (439)
Q Consensus 155 --------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 207 (439)
........++++|.. .+++.++.++ .|..+|..+++.+-....... ...
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~-~~w-- 294 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG-DSW-- 294 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-CCS--
T ss_pred ccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC-ccc--
Confidence 001112346788866 5777777665 389999998875432211000 000
Q ss_pred cccccCCCccEEEEEEccCCC---EEEEec-CCeEEEEEccCCCCCCCCCCCc--cc--c--cccc------------cc
Q 013644 208 RHLIGKNNIHITGLAYSNTSE---LLISYN-DELVYLFEKNMGLGPSPLSLSP--ED--L--QKRE------------EP 265 (439)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~--~--~~~~------------~~ 265 (439)
......+.....+..+|+ .++.++ +|.++++|..++.......+.. +. + .... ..
T Consensus 295 ---d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 371 (668)
T 1kv9_A 295 ---DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPI 371 (668)
T ss_dssp ---CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCE
T ss_pred ---cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCee
Confidence 000012222223334664 455665 9999999988874221100000 00 0 0000 00
Q ss_pred eeEeCCCCcceeeeEEeeCCCCceEEE------------------------------------eCCCCeEEEEecCCCce
Q 013644 266 QVYSGHRNSQTVKGVNFFGPNDEYVMS------------------------------------GSDCGHLFIWKKKGGKL 309 (439)
Q Consensus 266 ~~~~~~~~~~~v~~~~~~s~~~~~l~~------------------------------------~~~dg~i~iwd~~~~~~ 309 (439)
..+.+......-..++ ++|+...++. ...+|.|..||+.+++.
T Consensus 372 ~~~p~~~G~~~w~~~a-~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~ 450 (668)
T 1kv9_A 372 VMWPSPFGAHNWHSMS-FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA 450 (668)
T ss_dssp EESSCTTCSSCSSCCE-EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE
T ss_pred EECCCCccccCCCcce-ECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE
Confidence 0000000000011133 4555554432 12348899999999998
Q ss_pred eEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 310 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 310 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
+.....+ .+.....+...+.+++.++.||.++.||..+++.
T Consensus 451 ~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 451 AWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 8776543 2333334445677888899999999999988775
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.93 E-value=1.6e-06 Score=69.50 Aligned_cols=219 Identities=12% Similarity=-0.007 Sum_probs=133.7
Q ss_pred ccceeeeeeccc--cceEEEEECCCCCEEEEecCC--CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec
Q 013644 3 RINLCGKLHGHK--GCVNAVEFNSTGDFLVSGSDD--KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS 78 (439)
Q Consensus 3 ~~~~~~~l~~h~--~~I~~~~~s~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 78 (439)
.+++++++ .|. .-...+.|++ +.+..+.+.+ ..|+.+|+.+++.+........---..++.. ++...+..-
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~---~~~ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW---RDRLIQLTW 82 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEES
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe---CCEEEEEEe
Confidence 46777888 455 3466899986 6666776665 4999999999987665532222112234443 344555556
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.++.+.++|..+.+.+......++ -..+ .+++..++++- .++.|.++|..+.+....+....... .-.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~---Gwgl--t~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~------~~~ 150 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE---GWAL--TSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGR------PLD 150 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC---CCEE--EECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTE------ECC
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC---ceEE--eeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCc------ccc
Confidence 689999999988887755444332 1344 45676666555 48899999999998888776543110 012
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeE
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 238 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i 238 (439)
.++.+.+. ++ .+++..-.+..|.+.|.++++.+..+....-..... ........-.+.|+++|+++.|.+.+..-=
T Consensus 151 ~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 151 NLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp CEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred cceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 35666665 33 566555567799999999998766543321110000 000112345789999998765555443333
Q ss_pred EEEE
Q 013644 239 YLFE 242 (439)
Q Consensus 239 ~i~d 242 (439)
++|.
T Consensus 227 ~~~~ 230 (243)
T 3mbr_X 227 MLYE 230 (243)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 3333
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.91 E-value=3.2e-06 Score=68.73 Aligned_cols=221 Identities=6% Similarity=0.093 Sum_probs=136.0
Q ss_pred eeeeccccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 8 GKLHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 8 ~~l~~h~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
+.+.|=.+.+..++|+|++. ++++...++.|...|.. ++.+.++...-....-.+++.+ ++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence 35566667899999999765 45556678889999987 5544444222235677888887 88777776677889999
Q ss_pred EcccCcee---eeEEe----cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC---CCceeeEEeeccCCCCCCCCc
Q 013644 87 QIFEDGRM---DTKRL----GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS---DSATRLFYCSSFSENSKQPMN 156 (439)
Q Consensus 87 ~~~~~~~~---~~~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (439)
++.....+ ....+ .........++|+|.++.++++ .+.....+|.+.. ......+....+... ..
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va-~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~----~~ 171 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF-KEKNPIEVYKVNGLLSSNELHISKDKALQRQ----FT 171 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE-EESSSEEEEEEESTTCSSCCEEEECHHHHHT----CC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE-ECcCCceEEEEcccccCCceeeecchhhccc----cc
Confidence 88655431 11111 1234557899999998766554 4444445555541 111222211101000 01
Q ss_pred eeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCC
Q 013644 157 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 236 (439)
Q Consensus 157 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~ 236 (439)
...+.+++++|..+++++....+..|..+|.... .+..+........ +...-.....|+|.++|++++++..+
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~------l~~~~~qpEGia~d~~G~lyIvsE~n 244 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRG------LSHNIKQAEGVAMDASGNIYIVSEPN 244 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGG------CSSCCCSEEEEEECTTCCEEEEETTT
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCC------cccccCCCCeeEECCCCCEEEEcCCc
Confidence 2346889999988888999889999999997643 3222211110000 01112367889999999988887666
Q ss_pred eEEEEEc
Q 013644 237 LVYLFEK 243 (439)
Q Consensus 237 ~i~i~d~ 243 (439)
.++.|..
T Consensus 245 ~~y~f~~ 251 (255)
T 3qqz_A 245 RFYRFTP 251 (255)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 7776653
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=1.3e-07 Score=76.32 Aligned_cols=183 Identities=10% Similarity=0.095 Sum_probs=118.7
Q ss_pred ceEEEEEccCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA 182 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 182 (439)
-...+.|+ ++ .++.+.+.+| .|+.+|+++++....+..... ..--.+++. +..++++.-.++.+
T Consensus 44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~----------~FgeGit~~--g~~ly~ltw~~~~v 109 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKR----------YFGEGISDW--KDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTT----------CCEEEEEEE--TTEEEEEESSSSEE
T ss_pred ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCc----------cceeEEEEe--CCEEEEEEeeCCEE
Confidence 34788888 55 5777777766 899999999998887754211 011223443 43566666678999
Q ss_pred EEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 183 RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
.+||..+.+.+..+.. .. ....++++++.|+.++ ++.|.++|..+.
T Consensus 110 ~v~D~~t~~~~~ti~~-------------~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~--------------- 156 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNY-------------DG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESL--------------- 156 (262)
T ss_dssp EEEETTTCCEEEEEEC-------------SS-----CCCCEEECSSCEEECCSSSEEEEECTTTC---------------
T ss_pred EEEECccCcEEEEEEC-------------CC-----CceEEecCCCEEEEECCCCeEEEEcCCCC---------------
Confidence 9999998774332211 11 1123335676666664 788999998775
Q ss_pred cccceeEeCCCCc---ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc------------ccceEEEeec
Q 013644 262 REEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------------RHVVNQLEPH 326 (439)
Q Consensus 262 ~~~~~~~~~~~~~---~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~~~~s 326 (439)
+....+...... ..++.+.| . +|+..+..-.++.|.+.|.++++.+..+... ....+.|+|+
T Consensus 157 -~v~~~I~V~~~g~~~~~lNELe~-~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d 233 (262)
T 3nol_A 157 -TPVRTITVTAHGEELPELNELEW-V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD 233 (262)
T ss_dssp -SEEEEEECEETTEECCCEEEEEE-E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE
T ss_pred -eEEEEEEeccCCccccccceeEE-E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc
Confidence 333443332211 12345663 3 7776666667889999999999988776532 1356899999
Q ss_pred CCCcEEEEEec
Q 013644 327 PHIPMFATCGI 337 (439)
Q Consensus 327 ~~~~~l~s~~~ 337 (439)
|+++.|+..+.
T Consensus 234 p~~~~lfVTGK 244 (262)
T 3nol_A 234 KEHHRLFVTGK 244 (262)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEECC
Confidence 98887666664
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=1.6e-06 Score=70.01 Aligned_cols=208 Identities=9% Similarity=-0.009 Sum_probs=129.7
Q ss_pred cceeeeeecccc--ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCC
Q 013644 4 INLCGKLHGHKG--CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADG 81 (439)
Q Consensus 4 ~~~~~~l~~h~~--~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 81 (439)
.++++++. |.. -...+.|+ ++.+..+.+.+|.|+++|+.+++.+...+ ...---..+++. .+.+.+..-.++
T Consensus 43 ~~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l-~~~~FgeGit~~---g~~Ly~ltw~~~ 116 (268)
T 3nok_A 43 AHIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER-LGNIFAEGLASD---GERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE-CTTCCEEEEEEC---SSCEEEEESSSC
T ss_pred eEEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC-CCCcceeEEEEe---CCEEEEEEccCC
Confidence 35666663 443 34688887 46777888888999999999998777662 222112234443 344444555689
Q ss_pred cEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeE
Q 013644 82 QVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 82 ~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
.+.++|..+.+.+......+. -..++ ++++.++++ ..++.|.++|..+.+....+....... .-..++
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~------~v~~lN 184 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE---GWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQ------PVELIN 184 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC---CCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTE------ECCCEE
T ss_pred EEEEEECCcCcEEEEEeCCCc---eeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCc------cccccc
Confidence 999999998887755444322 23343 567755555 458899999999999888776543111 112356
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCC-EEEEe
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 233 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 233 (439)
.+.|. ++ .+++..-.+..|.+.|..+++.+..+......... . ........-.+.|+++|+++ +++++
T Consensus 185 eLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-~-~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 185 ELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-A-GQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-T-TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-c-ccccCcCCceEEEEEcCCCCEEEEeC
Confidence 67776 34 66666556789999999999866544322100000 0 00011234578999999865 55555
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=8.1e-07 Score=71.72 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=119.2
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 184 (439)
-...+.|+. ..++.+.+.+|.|+.+|+++++....+ .... ..--.+++. +..++++.-.++.+.+
T Consensus 56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~----------~FgeGit~~--g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGN----------IFAEGLASD--GERLYQLTWTEGLLFT 120 (268)
T ss_dssp CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTT----------CCEEEEEEC--SSCEEEEESSSCEEEE
T ss_pred ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC----------cceeEEEEe--CCEEEEEEccCCEEEE
Confidence 346888874 458889999999999999999988877 3211 011234444 3366666667899999
Q ss_pred EeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
||..+.+.+..+.. .. .+ .. +.++++.|+.+. ++.|.++|..+. +
T Consensus 121 ~D~~Tl~~~~ti~~-------------~~-eG--wG--Lt~Dg~~L~vSdGs~~l~~iDp~T~----------------~ 166 (268)
T 3nok_A 121 WSGMPPQRERTTRY-------------SG-EG--WG--LCYWNGKLVRSDGGTMLTFHEPDGF----------------A 166 (268)
T ss_dssp EETTTTEEEEEEEC-------------SS-CC--CC--EEEETTEEEEECSSSEEEEECTTTC----------------C
T ss_pred EECCcCcEEEEEeC-------------CC-ce--eE--EecCCCEEEEECCCCEEEEEcCCCC----------------e
Confidence 99998775432211 11 11 22 235677666665 889999998776 3
Q ss_pred cceeEeCCCCcc---eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-------------ccceEEEeecC
Q 013644 264 EPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-------------RHVVNQLEPHP 327 (439)
Q Consensus 264 ~~~~~~~~~~~~---~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~s~ 327 (439)
....+....... .++.+.| . +|+..+....++.|.+.|.++++.+..+... ....+.|+++|
T Consensus 167 v~~~I~V~~~g~~v~~lNeLe~-~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 167 LVGAVQVKLRGQPVELINELEC-A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp EEEEEECEETTEECCCEEEEEE-E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred EEEEEEeCCCCcccccccccEE-e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 334433322211 2455664 3 7776666667889999999999988776532 13678999999
Q ss_pred CCcEEEEEe
Q 013644 328 HIPMFATCG 336 (439)
Q Consensus 328 ~~~~l~s~~ 336 (439)
+++.|+..+
T Consensus 245 ~~~rlfVTG 253 (268)
T 3nok_A 245 GSGRIFMTG 253 (268)
T ss_dssp TTCCEEEEE
T ss_pred CCCEEEEeC
Confidence 877655554
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.84 E-value=7e-07 Score=84.84 Aligned_cols=278 Identities=12% Similarity=0.010 Sum_probs=146.5
Q ss_pred EEEECC-CCCEEEEecCCC-----------eEEEEeCCCCcce--eeeecCCcccEEEEEEeecCCCcEEEEecC-CCcE
Q 013644 19 AVEFNS-TGDFLVSGSDDK-----------LVIFWDWKDRREK--FSYLSGHLDNIFQTRIMPFTDDRKIITSSA-DGQV 83 (439)
Q Consensus 19 ~~~~s~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i 83 (439)
++++.| +|++++.|+.+. .+.+||..+++-. ......+.....++++.+ ++.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCce
Confidence 556667 888888886542 5889998876522 122122333334466666 8999999884 5689
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeC-CC-----CcEEEEEccCCCceeeEEe--eccCCCCCCCC
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCG-ED-----GFVQHFDLRSDSATRLFYC--SSFSENSKQPM 155 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~ 155 (439)
.+||..+.+......+... ..-.+++..++++ +++.|+ .+ ..+.+||..+++-...-.. .....
T Consensus 268 ~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~------ 339 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT------ 339 (656)
T ss_dssp EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC------
T ss_pred EEecCcCCceeECCCCCcc-ccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc------
Confidence 9999987765433222221 1123455667886 677777 34 5689999987653321000 00000
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCc---------eEEEEeCcCCcccCCCCCCCCccccccccc---ccCCCccEEEEEE
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDE---------YARVYDIRKCHWYSPISSDTPVDTFCPRHL---IGKNNIHITGLAY 223 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~ 223 (439)
. .- ...+..++ .+++.|+.+| .+..||..+....... ..... .......-.++.+
T Consensus 340 -~-~~-~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~---------~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 340 -A-DK-QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA---------GKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp -C-CT-TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE---------EECEETTEECCCCBTCEEEEE
T ss_pred -c-cc-cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecC---------CccccccccCCCCCCCceEec
Confidence 0 00 01222323 4555555444 4677887764421100 00000 0000112234444
Q ss_pred c-cCCCEEEEec-CC-----------eEEEEEccCCCCCCCCCCCcccccccccceeE--eCCCCcceeeeEEeeCCCCc
Q 013644 224 S-NTSELLISYN-DE-----------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 224 ~-~~~~~l~~~~-d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~s~~~~ 288 (439)
. .++++++.|+ ++ .+.+||..+.. ..... ...... ...+++ ..|+++
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----------------W~~~~~~~mp~~R-~~~~~~-~l~~g~ 468 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----------------NTVFASNGLYFAR-TFHTSV-VLPDGS 468 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----------------EEEECTTCCSSCC-BSCEEE-ECTTSC
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----------------eeEEccCCCCCCc-ccCCeE-ECCCCC
Confidence 3 3677777765 22 56677765431 11110 001111 112223 467999
Q ss_pred eEEEeCCC-----------CeEEEEecCCCceeE--eecccccceEEEeecCCCcEEEEEec
Q 013644 289 YVMSGSDC-----------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGI 337 (439)
Q Consensus 289 ~l~~~~~d-----------g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~ 337 (439)
+++.|+.+ ..+.+||..+.+-.. .+........+..+.|++++++.||.
T Consensus 469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 99999854 468999987754322 22211222234556799999999885
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=4e-05 Score=65.46 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=140.9
Q ss_pred EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccC---ceeeeEEecCCC
Q 013644 28 FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFED---GRMDTKRLGKHQ 103 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~---~~~~~~~~~~~~ 103 (439)
+|+.+.. ..|+..++.+..... +. ........++|.+ .+..|+ +-...+.|..+++... .... ..+....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~-~~-~~~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~-~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS-LI-PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE-EE-CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CE-EEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe-hh-cCCCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccE-EEEeCCC
Confidence 3444443 468899988765433 22 3345678999997 655554 4455789999998651 1111 1232223
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-ceE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-EYA 182 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i 182 (439)
.....+++.+.+..++++-...+.|.++++........+. .. ......++++|.++.++++.... +.|
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~----------~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EN----------GSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CT----------TCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CC----------CCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 4567899987666677777788999999987543322222 11 12367899999775666665443 688
Q ss_pred EEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 183 RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 183 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
..+++..... ..+....-.....+++++++..|..+. .+.|..+++...
T Consensus 146 ~~~~~dG~~~---------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-------------- 196 (316)
T 1ijq_A 146 KKGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-------------- 196 (316)
T ss_dssp EEEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------------
T ss_pred EEEcCCCCCe---------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC--------------
Confidence 8888764221 011112234578999998876665553 679999998643
Q ss_pred ccccceeE-eCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 261 KREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 261 ~~~~~~~~-~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
..+.+ ..........+++ +. .+.++++-...+.|..++..+++.+..+.
T Consensus 197 ---~~~~~~~~~~~~~~P~gia-v~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 197 ---NRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp ---SCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ---ceEEEeecCCccCCcEEEE-EE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 11222 2111112256666 43 45666666677899999987776655543
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=1.3e-06 Score=81.09 Aligned_cols=310 Identities=10% Similarity=0.052 Sum_probs=158.9
Q ss_pred CCEEEEecC-CCeEEEEeC-CCCcceeeeecCCccc---------E-EEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 26 GDFLVSGSD-DKLVIFWDW-KDRREKFSYLSGHLDN---------I-FQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 26 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~h~~~---------v-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
+..+..++. ++.|.-+|. .+++.+-++....... + ..+++ .+..++.++.|+.|..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence 345555666 789999999 8888765542211100 0 11222 456778888899999999999887
Q ss_pred eeeEEecCCCC--ceEE-EEEccCCCcEEEEeCC------CCcEEEEEccCCCceeeEEeeccC------CCC-------
Q 013644 94 MDTKRLGKHQG--RVYK-LAVEPGSPYIIYSCGE------DGFVQHFDLRSDSATRLFYCSSFS------ENS------- 151 (439)
Q Consensus 94 ~~~~~~~~~~~--~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~------~~~------- 151 (439)
+-...+..+.. .+.+ .... ++ .++.++. ++.|+.+|.++++.+..+...... +..
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 75544443211 1111 1111 33 3445544 799999999999987766532110 000
Q ss_pred ----------C----CCCceeeeEEEeecCCCCcEEEEeecC----------------ceEEEEeCcCCcccCCCCCCCC
Q 013644 152 ----------K----QPMNSIRLNAIVIDPRNPNYFAVGGSD----------------EYARVYDIRKCHWYSPISSDTP 201 (439)
Q Consensus 152 ----------~----~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~ 201 (439)
. ..........+++.+.. ..++.+..+ +.|..+|.++++.+-.......
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 0 00000001234566654 345444422 3588999988875332211000
Q ss_pred cccccccccccCCCccEEEEEEccCCC---EEEEec-CCeEEEEEccCCCCCCCCCCCcc-------cccccccc-----
Q 013644 202 VDTFCPRHLIGKNNIHITGLAYSNTSE---LLISYN-DELVYLFEKNMGLGPSPLSLSPE-------DLQKREEP----- 265 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~----- 265 (439)
. .. -......++. +....+|+ +++.++ +|.++++|..++...-...+... +.....+.
T Consensus 294 d-~~----d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~ 367 (571)
T 2ad6_A 294 D-EW----DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEF 367 (571)
T ss_dssp C-SS----CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGG
T ss_pred c-cc----ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceeccccc
Confidence 0 00 0000112221 22234674 455555 88999999887742111100000 00000000
Q ss_pred ---------eeEeCCCCcceeeeEEeeCCCCceEEEeC-------------------------------------CCCeE
Q 013644 266 ---------QVYSGHRNSQTVKGVNFFGPNDEYVMSGS-------------------------------------DCGHL 299 (439)
Q Consensus 266 ---------~~~~~~~~~~~v~~~~~~s~~~~~l~~~~-------------------------------------~dg~i 299 (439)
....+......-..++ ++|+..+++... .+|.|
T Consensus 368 ~~~~~~~~~~~~P~~~Gg~~w~~~a-~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 368 ATRMDHKGTNICPSAMGFHNQGVDS-YDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCE-EETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred CCCCCCCceEECCCCccccCCCCce-ECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 0000000000012233 566665555432 35889
Q ss_pred EEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCC
Q 013644 300 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 351 (439)
Q Consensus 300 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 351 (439)
..||..+++.+..+... ..+....+...+.+++.++.||.|+.||..+++.
T Consensus 447 ~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 99999999988776532 2222233333456777789999999999988875
No 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.80 E-value=6.4e-05 Score=66.46 Aligned_cols=248 Identities=14% Similarity=0.054 Sum_probs=147.8
Q ss_pred EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEe-cCCCcEEEEEcccCc--eeeeEEecCCCC
Q 013644 28 FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITS-SADGQVRLGQIFEDG--RMDTKRLGKHQG 104 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~--~~~~~~~~~~~~ 104 (439)
+|+.+. ...|+..++....... + ......+..++|.+ .+..|+.+ ...+.|..+++.... ......+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~-~-~~~~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS-L-IPNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE-E-ECSCSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCcceeE-e-ccccCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444443 3678888887654332 2 23456788999998 55655544 456788888886421 111122333445
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-CceEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYAR 183 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~ 183 (439)
....+++.+.+..++++-...+.|.+.++........+.. .......++++|.++.++++-.. .+.|.
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-----------~~~~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-----------SSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-----------CCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence 6789999986666777777888999999876544333321 12236789999976556655433 46788
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
..++..... ..+....-.....|++++++..|..+. .+.|..+++...
T Consensus 229 ~~~~dG~~~---------------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--------------- 278 (400)
T 3p5b_L 229 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--------------- 278 (400)
T ss_dssp EEETTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------
T ss_pred EEeCCCCcc---------------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---------------
Confidence 888765321 111122235678999998877666653 778999998653
Q ss_pred cccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEe
Q 013644 262 REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE 324 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 324 (439)
................+++ + ..+.++.+-...+.|..++..+|+.+..+.........+.
T Consensus 279 -~~~~~~~~~~~l~~P~gl~-v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 279 -NRKTILEDEKRLAHPFSLA-V-FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp -CCEEEEECSSTTSSEEEEE-E-ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred -ccEEEEeCCCCCCCCEEEE-E-eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 1112222211112245666 3 2445566666778899999777877666553333334443
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=5.2e-06 Score=77.03 Aligned_cols=114 Identities=10% Similarity=0.013 Sum_probs=70.3
Q ss_pred CCEEEEecC-CCeEEEEeC-CCCcceeeeecCCcc----------cEEEEEEeecCCCcE----EEEecCCCcEEEEEcc
Q 013644 26 GDFLVSGSD-DKLVIFWDW-KDRREKFSYLSGHLD----------NIFQTRIMPFTDDRK----IITSSADGQVRLGQIF 89 (439)
Q Consensus 26 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~~----l~s~~~dg~i~iw~~~ 89 (439)
+..+..++. ++.|.-+|. .+++.+-++...... ....+++.| .+.. |+.++.|+.|..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 788999999 888876554221110 012345544 4444 8888889999999999
Q ss_pred cCceeeeEEecCCCC--ceEE-EEEccCCCcEEEEeC------CCCcEEEEEccCCCceeeEEe
Q 013644 90 EDGRMDTKRLGKHQG--RVYK-LAVEPGSPYIIYSCG------EDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~--~v~~-i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 144 (439)
+++.+-...+..+.. .+.+ ..+ .++ .++.++ .++.|+.+|.++++.+-.+..
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYV-VKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEE-ETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCCEEEeecCCCCCccceeecCCEE-ECC--EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 988775544433210 1111 111 134 344554 389999999999998766653
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.75 E-value=2.8e-06 Score=78.83 Aligned_cols=293 Identities=11% Similarity=0.001 Sum_probs=156.7
Q ss_pred CcEEEEecC-CCcEEEEEc-ccCceeeeEEecCCCC--------ce-EEEEEccCCCcEEEEeCCCCcEEEEEccCCCce
Q 013644 71 DRKIITSSA-DGQVRLGQI-FEDGRMDTKRLGKHQG--------RV-YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSAT 139 (439)
Q Consensus 71 ~~~l~s~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~--------~v-~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 139 (439)
+..++.++. ++.|.-+|. .+++.+-...+..... .+ ..++.. +. .++.++.|+.|..+|.++++..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AG-QIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CC-EEEEEeCCCEEEEEECCCCCEE
Confidence 445555666 788999999 8888764433322110 00 112332 33 4667888999999999999987
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec------CceEEEEeCcCCcccCCCCCCCCcccc--------
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS------DEYARVYDIRKCHWYSPISSDTPVDTF-------- 205 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~-------- 205 (439)
............ .....++ .. + ..+++++. ++.|+.+|..+++.+-......+....
T Consensus 139 W~~~~~~~~~~~--~~~~~P~----v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~ 209 (571)
T 2ad6_A 139 WEVEVCDPKVGS--TLTQAPF----VA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNS 209 (571)
T ss_dssp EEEECCCGGGTC--BCCSCCE----EE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred EEecCCCCCccc--eeccCCE----EE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccc
Confidence 665532211000 0001111 11 2 24555544 789999999998865433222111000
Q ss_pred ---------------cccccccCCCccEEEEEEccCCCEEEEec-C----------------CeEEEEEccCCCCCCCCC
Q 013644 206 ---------------CPRHLIGKNNIHITGLAYSNTSELLISYN-D----------------ELVYLFEKNMGLGPSPLS 253 (439)
Q Consensus 206 ---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~ 253 (439)
...............+++.+....+..+. + +.|..+|..++
T Consensus 210 ~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG------- 282 (571)
T 2ad6_A 210 ANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG------- 282 (571)
T ss_dssp TCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-------
T ss_pred ccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-------
Confidence 00000000011112345566554444432 1 25888888776
Q ss_pred CCcccccccccceeEeCCC--------CcceeeeEEeeCCCCc---eEEEeCCCCeEEEEecCCCceeEeecccc-----
Q 013644 254 LSPEDLQKREEPQVYSGHR--------NSQTVKGVNFFGPNDE---YVMSGSDCGHLFIWKKKGGKLVRLMVGDR----- 317 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----- 317 (439)
+..-.+.... ....+. +. ...+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 283 ---------~~~W~~~~~~~d~~d~~~~~~p~l-~~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 283 ---------MAKWGYQKTPHDEWDFAGVNQMVL-TD-QPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp ---------CEEEEEESSTTCSSCCCCCCCCEE-EE-EEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred ---------cEEEEecCCCCcccccccCCCCEE-Ee-cccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 2222332111 001111 11 224674 67788999999999999999876553211
Q ss_pred --------cce--------------------------EEEeecCCCcEEEEEe---------------------------
Q 013644 318 --------HVV--------------------------NQLEPHPHIPMFATCG--------------------------- 336 (439)
Q Consensus 318 --------~~v--------------------------~~~~~s~~~~~l~s~~--------------------------- 336 (439)
.++ ..++++|+..+++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 2356788777666543
Q ss_pred ----------cCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 337 ----------IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 337 ----------~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
.+|.|..||+.+++. .... ......... ....+..++.++.||.++++|.++++.+-
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~-~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCcccee-EEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 357899999987764 1111 111111110 11123456668899999999999987764
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.75 E-value=3.6e-06 Score=67.40 Aligned_cols=184 Identities=13% Similarity=0.038 Sum_probs=118.0
Q ss_pred CceEEEEEccCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCce
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY 181 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 181 (439)
.-...+.|++ + .++.+.+.+| .|+.+|+.+++....+...... .--.+++. +.+++...-.++.
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----------fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----------FGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------CEEEEEEE--TTEEEEEESSSSE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------ceeEEEEe--CCEEEEEEeeCCE
Confidence 4466899987 3 4777777754 8999999999988877543211 01223433 3366666677899
Q ss_pred EEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCccccc
Q 013644 182 ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQ 260 (439)
Q Consensus 182 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 260 (439)
+.+||..+.+.+..+.. .. . -..+ .++++.|+.+. ++.|.++|..+.
T Consensus 87 v~v~D~~tl~~~~ti~~-------------~~-~--Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~-------------- 134 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRY-------------PG-E--GWAL--TSDDSHLYMSDGTAVIRKLDPDTL-------------- 134 (243)
T ss_dssp EEEEETTTTEEEEEEEC-------------SS-C--CCEE--EECSSCEEEECSSSEEEEECTTTC--------------
T ss_pred EEEEECCcCcEEEEEeC-------------CC-C--ceEE--eeCCCEEEEECCCCeEEEEeCCCC--------------
Confidence 99999998775432211 11 1 1233 35666555554 889999998775
Q ss_pred ccccceeEeCCCCc---ceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeeccc-------------ccceEEEe
Q 013644 261 KREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-------------RHVVNQLE 324 (439)
Q Consensus 261 ~~~~~~~~~~~~~~---~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~ 324 (439)
+....+...... ..++.+.| . +|+..+....+..|.+.|.++++.+..+... ....+.|+
T Consensus 135 --~~~~~I~V~~~g~~~~~lNeLe~-~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA 210 (243)
T 3mbr_X 135 --QQVGSIKVTAGGRPLDNLNELEW-V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA 210 (243)
T ss_dssp --CEEEEEECEETTEECCCEEEEEE-E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred --eEEEEEEEccCCcccccceeeEE-e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE
Confidence 333333332211 12455553 2 6776666666789999999999988776521 13668999
Q ss_pred ecCCCcEEEEEec
Q 013644 325 PHPHIPMFATCGI 337 (439)
Q Consensus 325 ~s~~~~~l~s~~~ 337 (439)
++|+++.|+..+.
T Consensus 211 ~d~~~~~lfVTGK 223 (243)
T 3mbr_X 211 FDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEEET
T ss_pred EcCCCCEEEEECC
Confidence 9998776665553
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=2.2e-06 Score=81.40 Aligned_cols=258 Identities=12% Similarity=0.058 Sum_probs=132.3
Q ss_pred EEEEeecCCCcEEEEecCCC-----------cEEEEEcccCceeeeEEecC-CCCceEEEEEccCCCcEEEEeC-CCCcE
Q 013644 62 QTRIMPFTDDRKIITSSADG-----------QVRLGQIFEDGRMDTKRLGK-HQGRVYKLAVEPGSPYIIYSCG-EDGFV 128 (439)
Q Consensus 62 ~~~~~~~~~~~~l~s~~~dg-----------~i~iw~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~-~dg~i 128 (439)
.+++.|. ++..++.|+.+. .+.+||+.+++......+.. +.....++++..++. +++.|+ .+..+
T Consensus 190 ~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCE
T ss_pred eEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCce
Confidence 3444431 567777776532 58889998876544333322 223334567788887 777877 45689
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-cC-----ceEEEEeCcCCcccCCCCCC-CC
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SD-----EYARVYDIRKCHWYSPISSD-TP 201 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~-~~ 201 (439)
.+||..+++-...- ... ....-.+++..+++ ++++.|+ .+ ..+.+||..+.+........ .+
T Consensus 268 ~~yd~~t~~W~~~~---~~~-------~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p 336 (656)
T 1k3i_A 268 SLYDSSSDSWIPGP---DMQ-------VARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 336 (656)
T ss_dssp EEEEGGGTEEEECC---CCS-------SCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred EEecCcCCceeECC---CCC-------ccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence 99999877533221 111 01112234455555 7888888 34 46899999876543211000 00
Q ss_pred cccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCC-------c
Q 013644 202 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-------S 274 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 274 (439)
...... .........+..+. ..+++.+..+....+..||..+.. .......... .
T Consensus 337 ~~~~~~-~~~~~~~~~iyv~G-g~~g~~~~~~~~~~v~~yd~~~~~----------------w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 337 MLTADK-QGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSG----------------DVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp GCCCCT-TGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTC----------------EEEEEEECEETTEECCCC
T ss_pred cccccc-cceeecCCceEEEE-CCCCcEEEecCccceeeeecCCcc----------------eeecCCccccccccCCCC
Confidence 000000 00000111111111 112233322334567788876541 1111111110 0
Q ss_pred ceeeeEEee-CCCCceEEEeCCCC-----------eEEEEecCCCceeEee--cccccc-eEEEeecCCCcEEEEEecC-
Q 013644 275 QTVKGVNFF-GPNDEYVMSGSDCG-----------HLFIWKKKGGKLVRLM--VGDRHV-VNQLEPHPHIPMFATCGIE- 338 (439)
Q Consensus 275 ~~v~~~~~~-s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~--~~h~~~-v~~~~~s~~~~~l~s~~~d- 338 (439)
..-.++. + ..++++++.|+.++ .|.+||..+.+-.... ..+... -.++...|++++++.|+.+
T Consensus 399 ~~~~av~-~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 399 MCGNAVM-YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp BTCEEEE-EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCCceEe-ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence 0122333 3 24788888887532 6888888766543332 112222 2344566899999999865
Q ss_pred ----------CeEEEeccCCCCC
Q 013644 339 ----------KTVKLWAPMPTDF 351 (439)
Q Consensus 339 ----------g~i~iw~~~~~~~ 351 (439)
..+.+||+.+.+.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CcCcCCCCcccceEEEcCCCCce
Confidence 4688999876653
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.71 E-value=6.1e-05 Score=64.20 Aligned_cols=237 Identities=10% Similarity=0.038 Sum_probs=140.5
Q ss_pred EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCCCcEEEEEcccCceeeeEEecCCCCce
Q 013644 28 FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSADGQVRLGQIFEDGRMDTKRLGKHQGRV 106 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v 106 (439)
+|+.+. ...|+..++...................+.|.+ .+..| ++-...+.|..+++....... ..+.......
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCc
Confidence 344443 467999998876422222222334567899987 54554 455567889999886553211 1122223456
Q ss_pred EEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-cCceEEEE
Q 013644 107 YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVY 185 (439)
Q Consensus 107 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~ 185 (439)
..+++.+.+..++++-...+.|.++++...... .+... .......++++|.++.++++-. ..+.|..+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~----------~~~~P~giavdp~~g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQ----------ELDQPRAIALDPSSGFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS----------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEeC----------CCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence 789999866667777777889999998754332 22211 1223678999987655555542 35788888
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
++..... ..+....-.....+++++++..|..+ . .+.|..+++...
T Consensus 151 ~~dG~~~---------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~----------------- 198 (318)
T 3sov_A 151 GMDGSSR---------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT----------------- 198 (318)
T ss_dssp ETTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----------------
T ss_pred EcCCCCe---------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-----------------
Confidence 8764221 01111223456899999977665555 3 789999998643
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
....+... ......+++ +. .+.++.+-...+.|..++..+++....+.
T Consensus 199 ~~~~~~~~-~~~~P~gla-v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 199 NRQAVVKG-SLPHPFALT-LF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp SCEEEECS-CCSCEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEecC-CCCCceEEE-Ee-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 11222211 111255666 33 34555666667899999987777655544
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.71 E-value=8e-05 Score=64.55 Aligned_cols=220 Identities=6% Similarity=-0.032 Sum_probs=133.5
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeee
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
..|+..++...... ..+. ....+..++|++.+..++++-...+.|..+++........+.. .....
T Consensus 53 ~~I~~i~~~g~~~~--~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----------~~~~p 118 (349)
T 3v64_C 53 IDIRQVLPHRSEYT--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-----------GLESP 118 (349)
T ss_dssp SCEEEECTTSCCEE--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----------SCSCC
T ss_pred cceEEEeCCCCeeE--Eeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-----------CCCCc
Confidence 45777777544332 2222 3345789999987777777777888999999887654333211 01224
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C-Ce
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D-EL 237 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d-~~ 237 (439)
..+++.+.+++++++-...+.|.+.++..... ..+..........++++|.+..|.... . +.
T Consensus 119 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~ 183 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 183 (349)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred cEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCE
Confidence 67888876667777777788999999875321 111122234568899998665554443 4 78
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEecCCCceeEeeccc
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGD 316 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h 316 (439)
|..+++... ....+.. ........++ ++|++..| ++-...+.|..+++........+...
T Consensus 184 I~r~~~dG~-----------------~~~~~~~-~~~~~PnGla-~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~ 244 (349)
T 3v64_C 184 IEASSMDGS-----------------GRRIIAD-THLFWPNGLT-IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 244 (349)
T ss_dssp EEEEETTSC-----------------SCEESCC-SSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred EEEEeCCCC-----------------CcEEEEE-CCCCCcceEE-EeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC
Confidence 888887643 1111111 1112367788 78765555 44456689999998754333333333
Q ss_pred ccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 317 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 317 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
......+++ ..+.++++-...+.|...+..++
T Consensus 245 ~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 245 LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 345567777 34555666666778887774333
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.69 E-value=4.5e-05 Score=67.16 Aligned_cols=221 Identities=6% Similarity=-0.035 Sum_probs=135.4
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
...|+..++....... .+. ....+..++|++.+..++++-...+.|+.+++........+.. . ...
T Consensus 95 ~~~I~~i~~~~~~~~~--~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~----------~~~ 160 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTL--LLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-G----------LES 160 (386)
T ss_dssp BSCEEEECTTSCCCEE--EEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-S----------CSC
T ss_pred CccceeeccCCCcEEE--Eec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-C----------CCC
Confidence 3568888876544322 222 3356789999987777777777888999999887653333211 1 112
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C-C
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D-E 236 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d-~ 236 (439)
...+++++.+++++++-...+.|.+.++..... ..+..........+++.|.+..|.... . +
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---------------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~ 225 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 225 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---------------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCC
Confidence 456788876657777777778888888764321 111122234578899998766555543 4 6
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEecCCCceeEeecc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.|..+++... ....+... .......++ ++|++..| ++-+..+.|..+++........+..
T Consensus 226 ~I~r~~~dG~-----------------~~~~~~~~-~~~~PnGla-vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 226 RIEASSMDGS-----------------GRRIIADT-HLFWPNGLT-IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp EEEEEETTSC-----------------SCEEEECS-SCSCEEEEE-EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS
T ss_pred EEEEEeCCCC-----------------CcEEEEEC-CCCCeeeEE-EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC
Confidence 7888887643 12222111 112367788 78655544 4555678999999875443333333
Q ss_pred cccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 316 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
.......|++ ..+.++++-...+.|..++..++
T Consensus 287 ~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 287 GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 3345677887 34556666667788888885444
No 270
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.69 E-value=7e-06 Score=76.18 Aligned_cols=296 Identities=12% Similarity=0.072 Sum_probs=157.9
Q ss_pred CcEEEEecC-CCcEEEEEc-ccCceeeeEEecCCCC---------ceEEEEEccCCCc---EEEEeCCCCcEEEEEccCC
Q 013644 71 DRKIITSSA-DGQVRLGQI-FEDGRMDTKRLGKHQG---------RVYKLAVEPGSPY---IIYSCGEDGFVQHFDLRSD 136 (439)
Q Consensus 71 ~~~l~s~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~---~l~s~~~dg~i~iwd~~~~ 136 (439)
+..++.++. ++.|.-+|. .+++.+-......... ....+++.|.+.. .++.++.|+.|..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 788999999 8887764433322110 0123455443332 2567888999999999999
Q ss_pred CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee------cCceEEEEeCcCCcccCCCCCCCCccccc--c-
Q 013644 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDTPVDTFC--P- 207 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~- 207 (439)
+.+-........... .....++ +. + ..+++++ .++.|+.+|.++++.+-......+..... +
T Consensus 142 ~~~W~~~~~~~~~~~--~~~ssP~----v~--~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~ 212 (599)
T 1w6s_A 142 ETVWKVENSDIKVGS--TLTIAPY----VV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD 212 (599)
T ss_dssp CEEEEEECCCGGGTC--BCCSCCE----EE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred CEEEeecCCCCCccc--eeecCCE----EE--C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccc
Confidence 987665432211000 0001111 11 2 2455554 37899999999988654433222211000 0
Q ss_pred --------------------cccccCCCccEEEEEEccCCCEEEEec-C----------------CeEEEEEccCCCCCC
Q 013644 208 --------------------RHLIGKNNIHITGLAYSNTSELLISYN-D----------------ELVYLFEKNMGLGPS 250 (439)
Q Consensus 208 --------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~~ 250 (439)
.....+....-..+++.+...++..+. + +.|..+|..++
T Consensus 213 ~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG---- 288 (599)
T 1w6s_A 213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG---- 288 (599)
T ss_dssp TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC----
T ss_pred cccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC----
Confidence 000000000111345556655555543 3 37888888877
Q ss_pred CCCCCcccccccccceeEeCCCCc--------ceeeeEEeeC-CCC---ceEEEeCCCCeEEEEecCCCceeEeeccc--
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFG-PND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGD-- 316 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-- 316 (439)
+..-.++..... ..+. +. .. .+| ..++.++.+|.++++|..+|+++......
T Consensus 289 ------------~~~W~~q~~~~d~wd~d~~~~p~l-~d-~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~ 354 (599)
T 1w6s_A 289 ------------EAKFGYQKTPHDEWDYAGVNVMML-SE-QKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (599)
T ss_dssp ------------CEEEEEESSTTCSSCCCCCCCCEE-EE-EECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ------------ceeeEeecCCCccccccCCCccEE-Ee-ccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence 233333322110 0111 11 11 467 57788999999999999999987654311
Q ss_pred -----------ccce--------------------------EEEeecCCCcEEEEEe-----------------------
Q 013644 317 -----------RHVV--------------------------NQLEPHPHIPMFATCG----------------------- 336 (439)
Q Consensus 317 -----------~~~v--------------------------~~~~~s~~~~~l~s~~----------------------- 336 (439)
..++ ..++++|+.++++...
T Consensus 355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 434 (599)
T 1w6s_A 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA 434 (599)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence 0111 1355666665554421
Q ss_pred ----------------cCCeEEEeccCCCCC-CCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEecccceee
Q 013644 337 ----------------IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 337 ----------------~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
.+|.|..||+.+++. -..+ ........ .....+..++.++.||.++.+|.++++.+-
T Consensus 435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g-~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGG-TMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCc-ceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 347888888887764 1111 00000000 001124466678999999999999887653
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=2.3e-05 Score=72.83 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=65.5
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccE--------EEEEEeecCCCcEEEEecCCCcEEEEEcccCceeee
Q 013644 25 TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNI--------FQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT 96 (439)
Q Consensus 25 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v--------~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 96 (439)
++. ++.++.++.|.-+|..+++.+-++........ ..+++ .+..++.++.++.|..+|..+++.+-.
T Consensus 68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 444 44444434599999999887655422111100 11222 356777788899999999999987755
Q ss_pred EEecCCCC--ceE-EEEEcc---CCCcEEEEeC------CCCcEEEEEccCCCceeeE
Q 013644 97 KRLGKHQG--RVY-KLAVEP---GSPYIIYSCG------EDGFVQHFDLRSDSATRLF 142 (439)
Q Consensus 97 ~~~~~~~~--~v~-~i~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~ 142 (439)
.....+.. .+. ...... +++..+++++ .++.|+.+|.++++.+-..
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 44433211 111 111112 2332455554 3789999999999877654
No 272
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.65 E-value=0.00018 Score=69.09 Aligned_cols=237 Identities=14% Similarity=0.069 Sum_probs=140.3
Q ss_pred EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEE-EEecCCCcEEEEEcccCce--eeeEEecCCCC
Q 013644 28 FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKI-ITSSADGQVRLGQIFEDGR--MDTKRLGKHQG 104 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~ 104 (439)
+|+.+. ...|+..++...... .+ ......+..++|.+ ....| ++-...+.|+.+++..... .....+.....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~-~l-~~~~~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT-SL-IPNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE-EE-ECSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccc-ccceeEeeccCCcce-ee-ecCCCceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 344443 356888887665432 22 23445678899987 55555 4555567888888864211 11122333445
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-ceEE
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-EYAR 183 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~ 183 (439)
....|++.+.+..++++-...+.|.+.++........+. .. ......|+++|.++.++++-... +.|.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~----------l~~P~gIaVDp~~g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EN----------GSKPRAIVVDPVHGFMYWTDWGTPAKIK 540 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CT----------TCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CC----------CCCcceEEEecCCCCEEEecCCCCCeEE
Confidence 677899998887788888888999999987554333222 11 22368899999765666654333 6788
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccc
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
..++..... ..+....-.....|++++.+..|+.+. .+.|..+++...
T Consensus 541 ~~~~dG~~~---------------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--------------- 590 (791)
T 3m0c_C 541 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--------------- 590 (791)
T ss_dssp EEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------
T ss_pred EEecCCCce---------------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC---------------
Confidence 888875331 111122335688999998776665553 678999988654
Q ss_pred cccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 262 REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
.....+..........+|+ +. .++++++-...+.|...+..+|+.+..+
T Consensus 591 -~~~~v~~~~~~l~~P~gla-v~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 591 -NRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp -SCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -ceEEEecCCCccCCCCEEE-Ee-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 1222222221111245565 32 3355555566788888887777655444
No 273
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=9.1e-06 Score=69.85 Aligned_cols=210 Identities=10% Similarity=0.090 Sum_probs=118.9
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeec-cCC-----CC---CCCCceeeeEEEeecCCCCcEEE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSS-FSE-----NS---KQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-----~~---~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
....++++.+++. +++++..++.|..|+..++.... +.... +.. .. ...........+++.+++++++
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~- 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY- 95 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence 3456788999886 46678888999999887654332 21100 000 00 0000112467899997332444
Q ss_pred EeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec------------------C
Q 013644 175 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN------------------D 235 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~------------------d 235 (439)
++...+.+..+|..++... .+.. ............+++.+ +|+++++.. .
T Consensus 96 v~d~~~~i~~~d~~~g~~~----------~~~~-~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHAT----------QLAT-SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EEETTTEEEEECTTCEECE----------EEES-EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EEECCCCEEEEeCCCCEEE----------Eecc-cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 4444455888887654310 0000 00001123467899999 998777653 2
Q ss_pred CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe-CCCCeEEEEecCCCc--eeEe
Q 013644 236 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGK--LVRL 312 (439)
Q Consensus 236 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~ 312 (439)
+.|..||..++ +......... ....++ +++++++|+.+ +..+.|.+|++.... ....
T Consensus 165 g~v~~~d~~~~----------------~~~~~~~~~~---~p~gia-~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~ 224 (322)
T 2fp8_A 165 GRLIKYDPSTK----------------ETTLLLKELH---VPGGAE-VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224 (322)
T ss_dssp EEEEEEETTTT----------------EEEEEEEEES---CCCEEE-ECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred ceEEEEeCCCC----------------EEEEeccCCc---cCcceE-ECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence 56888886544 1111111111 245677 89999866544 566899999987521 1111
Q ss_pred ecccccceEEEeecCCCcEEEEEec----------CCeEEEeccCC
Q 013644 313 MVGDRHVVNQLEPHPHIPMFATCGI----------EKTVKLWAPMP 348 (439)
Q Consensus 313 ~~~h~~~v~~~~~s~~~~~l~s~~~----------dg~i~iw~~~~ 348 (439)
+....+ ...+++.++|++.++... .+.|..++...
T Consensus 225 ~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 225 LVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred EEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC
Confidence 111123 678999999987666544 46788888754
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=6.3e-05 Score=67.21 Aligned_cols=243 Identities=8% Similarity=0.042 Sum_probs=136.7
Q ss_pred cEEEEEEeecCC-CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC----cEEEEEc
Q 013644 59 NIFQTRIMPFTD-DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG----FVQHFDL 133 (439)
Q Consensus 59 ~v~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg----~i~iwd~ 133 (439)
....++++| . +..|+.+...+.|+.+|+..+.... +.........++|+++++.++++...++ .+..++
T Consensus 138 ~P~~lavdp--~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~- 211 (430)
T 3tc9_A 138 GAVWLSFDP--KNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT- 211 (430)
T ss_dssp CCCEEEEET--TEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-
T ss_pred CCCEEEECC--CCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-
Confidence 346788885 3 3445444444788888886544322 2234456889999999986666655333 233344
Q ss_pred cCCCce--eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 134 RSDSAT--RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
..+... ..+. . ......++++|+++.++++-...+.|..++...+... .. ..
T Consensus 212 ~~g~~~~~~~l~--~----------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-------------~~-~~ 265 (430)
T 3tc9_A 212 RESGFKVITELT--K----------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-------------PL-FT 265 (430)
T ss_dssp GGGTSCSEEEEE--E----------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-------------EE-EE
T ss_pred CCCceeeeeeec--c----------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------EE-EE
Confidence 333322 1221 1 1124668899954477777777889999998764320 00 00
Q ss_pred cCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC------C-------Ccce
Q 013644 212 GKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH------R-------NSQT 276 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~ 276 (439)
.........++|+|++++|..+ . .+.|..++....... +.....+.+. . .-..
T Consensus 266 ~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~------------~~~~~~~ag~~g~~g~~dg~~~~a~~~~ 333 (430)
T 3tc9_A 266 IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR------------LTTPYIVCGQQGAKDWVDGVGKKARMHA 333 (430)
T ss_dssp CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE------------ECCCEEEEECTTCBCCBCEEGGGCBBSS
T ss_pred cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc------------ccceEEEeccCCCCCCCCCCCcceEeCC
Confidence 1112346789999999955554 3 789999887642100 0001111111 0 0001
Q ss_pred ee-eEEee--------CCCCceEEEeCCCCeEEEEecCCCceeEeec-------c--c--------ccceEEEeecC-CC
Q 013644 277 VK-GVNFF--------GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-------G--D--------RHVVNQLEPHP-HI 329 (439)
Q Consensus 277 v~-~~~~~--------s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~--h--------~~~v~~~~~s~-~~ 329 (439)
.. .+. . .++|.+.++-..++.|+.++ .+|+...... + . -.....|+++| ++
T Consensus 334 P~~gv~-v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 411 (430)
T 3tc9_A 334 PRQGTF-VKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE 411 (430)
T ss_dssp EEEEEE-EECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred CcceEE-EccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC
Confidence 22 233 3 24466666666678899888 3454433221 1 0 12478999999 46
Q ss_pred cEEEEEecCCeEEEeccC
Q 013644 330 PMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 330 ~~l~s~~~dg~i~iw~~~ 347 (439)
.++++-.....|+.++++
T Consensus 412 ~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 412 CFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEECCCCeEEEEccC
Confidence 666666667788887764
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.59 E-value=3.6e-05 Score=74.24 Aligned_cols=250 Identities=11% Similarity=0.103 Sum_probs=129.3
Q ss_pred cEEEEEEe-ecCCCcEEEEecC-C----CcEEEEEcccC-ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC----Cc
Q 013644 59 NIFQTRIM-PFTDDRKIITSSA-D----GQVRLGQIFED-GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED----GF 127 (439)
Q Consensus 59 ~v~~~~~~-~~~~~~~l~s~~~-d----g~i~iw~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d----g~ 127 (439)
.+...+|+ | ||++|+.+.. + .+|+++|+.++ +.+.. .+. .....++|+||++.++++.... ..
T Consensus 175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 67889999 9 9998875433 2 35999999887 53211 111 1234688999998777665322 25
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee--cCceEEEEeCcCCcccCCCCCCCCcccc
Q 013644 128 VQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTF 205 (439)
Q Consensus 128 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 205 (439)
|+.+++.++.....+.... . .......+.|+|++..++++.. ....|.++|+.++.. ..
T Consensus 249 v~~~~lgt~~~~~~lv~~~-~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--------~~--- 309 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEE-H-------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--------HN--- 309 (751)
T ss_dssp EEEEETTSCGGGCEEEEEC-C-------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--------CC---
T ss_pred EEEEECCCCchhcEEEEec-C-------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--------Cc---
Confidence 7888887765332211110 0 1123467899999844444432 234688888876420 00
Q ss_pred cccccccCCCccEEEEEEccCCCEEEEec-C----CeEEEEEccCCCCCCCCCCCccccccccccee-EeCCCCcceeee
Q 013644 206 CPRHLIGKNNIHITGLAYSNTSELLISYN-D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKG 279 (439)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 279 (439)
....+.........++.|+..+.+++.+. + ..|..+++.++ ..... +..+.....+..
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~----------------~~~~~~li~~~~~~~l~~ 373 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP----------------SDWSHVLVDHSEDVFMES 373 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST----------------TCCCCEEECCCSSEEEEE
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc----------------ccceeeEECCCCCcEEEE
Confidence 00111122233445555554555555554 3 26666776532 01122 222333223555
Q ss_pred EEeeCCCCceEEEeCCCCe--EEEEec-------CCCceeEeeccc-ccceEEEee----cCCCc-EEEEEecC---CeE
Q 013644 280 VNFFGPNDEYVMSGSDCGH--LFIWKK-------KGGKLVRLMVGD-RHVVNQLEP----HPHIP-MFATCGIE---KTV 341 (439)
Q Consensus 280 ~~~~s~~~~~l~~~~~dg~--i~iwd~-------~~~~~~~~~~~h-~~~v~~~~~----s~~~~-~l~s~~~d---g~i 341 (439)
+. +. .+.++++...++. |.++++ .+++....+... ...+..+.+ ++++. ++++.+.. +.+
T Consensus 374 ~~-~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~ 451 (751)
T 2xe4_A 374 IA-VR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTW 451 (751)
T ss_dssp EE-EC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEE
T ss_pred EE-EE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEE
Confidence 55 32 3455566666775 555564 344413333211 122344543 34554 44444433 467
Q ss_pred EEeccCCCCC
Q 013644 342 KLWAPMPTDF 351 (439)
Q Consensus 342 ~iw~~~~~~~ 351 (439)
..+++.+++.
T Consensus 452 ~~~d~~~~~~ 461 (751)
T 2xe4_A 452 FDVSPQDHSR 461 (751)
T ss_dssp EEECTTTCCE
T ss_pred EEEECCCCcE
Confidence 7778766553
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=8.9e-06 Score=75.60 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=91.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCC-cc--cEE-EEEEee-cCCCc-EEEEec------CCCcEEEEEcccCce
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGH-LD--NIF-QTRIMP-FTDDR-KIITSS------ADGQVRLGQIFEDGR 93 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h-~~--~v~-~~~~~~-~~~~~-~l~s~~------~dg~i~iw~~~~~~~ 93 (439)
+..++.++.|+.|.-+|..+++.+-+..... .. .+. ...... ..+++ .+++++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4457777889999999999998765542211 10 111 111121 00122 555554 378999999988876
Q ss_pred eeeEEecC-C--------------------------------------CCceEEEEEccCCCcEEEEeCC----------
Q 013644 94 MDTKRLGK-H--------------------------------------QGRVYKLAVEPGSPYIIYSCGE---------- 124 (439)
Q Consensus 94 ~~~~~~~~-~--------------------------------------~~~v~~i~~~~~~~~~l~s~~~---------- 124 (439)
+-...... + ...-..+++.|... +++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCccc
Confidence 64322210 0 00001345666665 4444332
Q ss_pred ----------C----CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeec-CCCC--cEEEEeecCceEEEEeC
Q 013644 125 ----------D----GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNP--NYFAVGGSDEYARVYDI 187 (439)
Q Consensus 125 ----------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~l~~~~~dg~i~i~d~ 187 (439)
| +.|..+|.++++..-.+....... ........++. +... .++. ..++.++.+|.++++|.
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~-wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDA-WDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCC-SCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCc-ccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEEC
Confidence 2 589999999999876654321100 00000011121 1221 2342 37888999999999999
Q ss_pred cCCcccCC
Q 013644 188 RKCHWYSP 195 (439)
Q Consensus 188 ~~~~~~~~ 195 (439)
.+++.+..
T Consensus 354 ~tG~~lw~ 361 (582)
T 1flg_A 354 SNGKLQNA 361 (582)
T ss_dssp TTCCEEEE
T ss_pred CCCCEecc
Confidence 99886643
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.56 E-value=0.00028 Score=63.05 Aligned_cols=243 Identities=10% Similarity=0.086 Sum_probs=138.1
Q ss_pred cEEEEEEeecCC--CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC---Cc-EEEEE
Q 013644 59 NIFQTRIMPFTD--DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED---GF-VQHFD 132 (439)
Q Consensus 59 ~v~~~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~-i~iwd 132 (439)
....++|.| + +..|+.+...+.|+.+++.++... .+.........+++++++. ++++.... .. +...+
T Consensus 140 ~P~gvavd~--~s~~g~Lyv~D~~~~I~~id~~~g~v~---~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDP--NSNYDDLYWVGQRDAFRHVDFVNQYVD---IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECT--TTTTCEEEEECBTSCEEEEETTTTEEE---EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEcc--ccCCCEEEEEeCCCCEEEEECCCCEEE---EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 356788887 4 334444433388999998665443 2333445689999999998 66565422 11 33333
Q ss_pred ccCCCce-eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 133 LRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
...+... ..+. . ......++++|+++.++++-..++.|+.+|..++.....+ ..
T Consensus 214 ~~~~~~~~~~~~--~----------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-------------~~ 268 (433)
T 4hw6_A 214 RASGFTERLSLC--N----------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-------------VM 268 (433)
T ss_dssp GGGTTCCEEEEE--E----------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-------------EE
T ss_pred CCCCeecccccc--c----------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-------------ec
Confidence 2221110 1111 1 1124568889954467767667788999998755421000 00
Q ss_pred cCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC-------------CCcce
Q 013644 212 GKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-------------RNSQT 276 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 276 (439)
......-..++++|+++.|..+ . .+.|+.++........ .....+.+. ..-..
T Consensus 269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~------------~~~~~~ag~~g~~g~~dg~~~~a~~~~ 336 (433)
T 4hw6_A 269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL------------AVPYIVCGQHSSPGWVDGMGTGARLWG 336 (433)
T ss_dssp CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB------------CCCEEEEECTTCCCCBCEEGGGSBCSS
T ss_pred cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc------------CcEEEEEecCCCCccCCCcccceEEcC
Confidence 0111223469999999855554 3 7899998875321100 000111110 00112
Q ss_pred eeeEEee---------CCCCceEEEeCCCCeEEEEecCCCceeEeeccc------------------ccceEEEeec-CC
Q 013644 277 VKGVNFF---------GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD------------------RHVVNQLEPH-PH 328 (439)
Q Consensus 277 v~~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------------~~~v~~~~~s-~~ 328 (439)
...++ + .++|++.++-..++.|+.++. +|...... +. -.....|+++ ++
T Consensus 337 P~gia-v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 413 (433)
T 4hw6_A 337 PNQGI-FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKR 413 (433)
T ss_dssp EEEEE-EEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred CccEE-EEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence 45677 6 777888888788899999985 45443222 11 1236789999 67
Q ss_pred CcEEEEEecCCeEEEeccC
Q 013644 329 IPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 329 ~~~l~s~~~dg~i~iw~~~ 347 (439)
+.++++-...+.|+.++++
T Consensus 414 g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 414 KCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEecC
Confidence 7777766677888888764
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.56 E-value=0.00026 Score=60.29 Aligned_cols=225 Identities=8% Similarity=0.003 Sum_probs=135.9
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
...|+..++..........+. .......++|.+.+..++.+-...+.|..+++........+.... -..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----------l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----------LLS 80 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----------CSC
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----------CCC
Confidence 467888888765311111122 224567899999766677777788899999988764322222111 123
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec---CC
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DE 236 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---d~ 236 (439)
...+++.+.+++++++-...+.|.++++..... ..+..........+++.|.+..|..+. .+
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~ 145 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVP 145 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSC
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE---------------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCC
Confidence 567888876657777777778999999875321 111122334568899998655444443 56
Q ss_pred eEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEecCCCceeEeecc
Q 013644 237 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVG 315 (439)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 315 (439)
.|..+++... ....+... .-.....++ +++++..| ++-+..+.|..+++........+.+
T Consensus 146 ~I~r~~~dG~-----------------~~~~~~~~-~l~~Pngla-vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~ 206 (318)
T 3sov_A 146 KIERAGMDGS-----------------SRFIIINS-EIYWPNGLT-LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG 206 (318)
T ss_dssp EEEEEETTSC-----------------SCEEEECS-SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEEEcCCC-----------------CeEEEEEC-CCCCccEEE-EeccCCEEEEEECCCCEEEEEcCCCCceEEEecC
Confidence 8888887643 11222111 112367788 78765555 4445678999999874433323332
Q ss_pred cccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 316 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 316 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
.......+++.. +.++.+-...+.|..++..+++
T Consensus 207 ~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 207 SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 334556777753 3455566667889888886554
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=2.2e-05 Score=75.77 Aligned_cols=116 Identities=14% Similarity=0.007 Sum_probs=75.8
Q ss_pred ceEEEEEC-CCCCEEEEecC-----CCeEEEEeCCCC-cceeeeecCCcccEEEEEEeecCCCcEEEEecCC-----CcE
Q 013644 16 CVNAVEFN-STGDFLVSGSD-----DKLVIFWDWKDR-REKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD-----GQV 83 (439)
Q Consensus 16 ~I~~~~~s-~~~~~l~t~~~-----dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i 83 (439)
.+...+|| |||++||.+.. ...|+++|+.++ +.+...+. .....+.|+| |++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp--Dg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP--DHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS--STTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec--CCCEEEEEEECCCCCCCEE
Confidence 67889999 99998885432 235999999988 53221111 1234688999 99888776654 357
Q ss_pred EEEEcccCceeeeEEec-CCCCceEEEEEccCCCcEEEEeCC--CCcEEEEEccCC
Q 013644 84 RLGQIFEDGRMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCGE--DGFVQHFDLRSD 136 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~ 136 (439)
.++++.++.......+. ........+.|+|++++++++... ...|.++|+.++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 77888665422111122 222345688999999987766533 345788888775
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.49 E-value=0.00014 Score=65.01 Aligned_cols=213 Identities=9% Similarity=0.066 Sum_probs=115.6
Q ss_pred cceEEEEECCC---CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC---Cc-EEEEE
Q 013644 15 GCVNAVEFNST---GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD---GQ-VRLGQ 87 (439)
Q Consensus 15 ~~I~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~-i~iw~ 87 (439)
.....|+|+|+ |.+++ +...+.|+.++..++... .+ .........+++.+ +++++++.... .. +...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~-~~-~~~~~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVD-IK-TTNIGQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEE-EE-CCCCSCEEEEEECT--TCCEEEEECCSCTTSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEE-Ee-ecCCCCccEEEECC--CCCEEEEcCCCCcccceEEEEE
Confidence 34678999985 55444 433388999998766432 32 23445688999999 88854444321 11 22233
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
... .......+. .......++++|++..++++-..++.|+.++..++.....+..... ...-..++|+|
T Consensus 214 ~~~-~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---------~~~~~~ia~dp 282 (433)
T 4hw6_A 214 RAS-GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---------KGSNFHIVWHP 282 (433)
T ss_dssp GGG-TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---------CSSCEEEEECT
T ss_pred CCC-Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---------CCCcccEEEeC
Confidence 221 111011111 2234567889994334666666788899999887765222221110 11124699999
Q ss_pred CCCcEEEEeecCceEEEEeCcC--CcccCC--CCCCCCcccccccccccCCCccEEEEEE---------ccCCCEEEEec
Q 013644 168 RNPNYFAVGGSDEYARVYDIRK--CHWYSP--ISSDTPVDTFCPRHLIGKNNIHITGLAY---------SNTSELLISYN 234 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~l~~~~ 234 (439)
++..++++-...+.|+.+++.. +..... .........+.........-.....+++ .+++.++++-.
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~ 362 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR 362 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence 9844666666778899988653 221100 0000000000000000111234667888 67777776665
Q ss_pred -CCeEEEEEc
Q 013644 235 -DELVYLFEK 243 (439)
Q Consensus 235 -d~~i~i~d~ 243 (439)
.+.|+.++.
T Consensus 363 ~n~~I~~~~~ 372 (433)
T 4hw6_A 363 DSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEECC
Confidence 778988875
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00013 Score=65.22 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=96.8
Q ss_pred ceEEEEECC-CCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-CC----cEEEEEcc
Q 013644 16 CVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-DG----QVRLGQIF 89 (439)
Q Consensus 16 ~I~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg----~i~iw~~~ 89 (439)
....|+++| ++..|..+...+.|+.+|..++.. ..+. ........++|.+ ++++|+.+.. ++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~-~~~~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVY-SGLSKVRTICWTH--EADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEE-CCCSCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEe-cCCCCcceEEEeC--CCCEEEEEeCCCCcccceEEEEeC-
Confidence 457899998 344555554448899999877543 2322 3445678999999 8986665544 22 2333333
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
.+.......+. .......++++|++.+++++-..++.|..++...+......... .......++|+|++
T Consensus 213 ~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~----------~~~~P~gia~~pdG 281 (430)
T 3tc9_A 213 ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ----------DSGWEFHIQFHPSG 281 (430)
T ss_dssp GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS----------SSSCCEEEEECTTS
T ss_pred CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC----------CCCcceeEEEcCCC
Confidence 33222111222 12345778899944447777777889999998866542222111 01235789999998
Q ss_pred CcEEEEeecCceEEEEeCcC
Q 013644 170 PNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 170 ~~~l~~~~~dg~i~i~d~~~ 189 (439)
..++++-...+.|..++...
T Consensus 282 ~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 282 NYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SEEEEEETTTTEEEEEEEET
T ss_pred CEEEEEECCCCEEEEEeCCc
Confidence 43666666778899988653
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=0.00044 Score=62.02 Aligned_cols=262 Identities=11% Similarity=0.047 Sum_probs=145.0
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecC-CCCceEEEEE-------ccCCCcEEEEeCCCCc---
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGK-HQGRVYKLAV-------EPGSPYIIYSCGEDGF--- 127 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~v~~i~~-------~~~~~~~l~s~~~dg~--- 127 (439)
....|+|.|...+.++++....+.|++.|+.++.......... .......++| ++++.+++++...++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3567888861124445554445678888887655443222111 2235899999 9999866666555422
Q ss_pred ---EEEEEccC-CCce-----eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc-------CCc
Q 013644 128 ---VQHFDLRS-DSAT-----RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-------KCH 191 (439)
Q Consensus 128 ---i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~ 191 (439)
|.+++... +... ..+. . ......++++|+++.++++-..++.|..+|+. ++.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~--~----------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA--A----------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE--E----------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred CceEEEEecCCCCceeecccceeec--c----------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 55665333 2221 1221 1 11245678899766778888888899999987 443
Q ss_pred ccCCCCCCC--CcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCccccccccccee
Q 013644 192 WYSPISSDT--PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 267 (439)
Q Consensus 192 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
.-....... ....+ ...........++|+|+|+.|..+ . ...|+.++....... ......
T Consensus 288 ~~tp~~~~~~g~~~~l----~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~------------~~~~~~ 351 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQL----FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE------------FITPYN 351 (496)
T ss_dssp CCCCBGGGCTTTEEEE----EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE------------ECCCEE
T ss_pred eeccccccccccccee----EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce------------ecccEE
Confidence 200000000 00000 011223446789999999965554 3 788998776432100 000011
Q ss_pred EeCC------C-------CcceeeeEEeeC-------CCCceEEEeCCCCeEEEEecCCCceeEeeccc-----------
Q 013644 268 YSGH------R-------NSQTVKGVNFFG-------PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD----------- 316 (439)
Q Consensus 268 ~~~~------~-------~~~~v~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h----------- 316 (439)
+.+. . .-.......+.. +++.+.++=..+++|+.++ .+|.. .++.+.
T Consensus 352 ~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~ 429 (496)
T 3kya_A 352 FVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQ 429 (496)
T ss_dssp EEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCS
T ss_pred ecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccc
Confidence 1111 0 000123122243 4667777777788999998 45543 333211
Q ss_pred -------------ccceEEEeecCC-CcEEEEEecCCeEEEeccCCCC
Q 013644 317 -------------RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 317 -------------~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
-.....|+++++ +.++++=.....|+.++++...
T Consensus 430 ~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 430 WGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp CCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred cccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 023678999996 7777766677899999987644
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.00034 Score=56.88 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=129.6
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 176 (439)
+.+.+-...+..++++|++..++++...++.|...|.. ++..+.+.... ....-.+++.+++ .++++.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g----------~~D~EGIa~~~~g-~~~vs~ 87 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF----------VKDLETIEYIGDN-QFVISD 87 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS----------CSSEEEEEECSTT-EEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC----------CCChHHeEEeCCC-EEEEEE
Confidence 35667777899999999887777777788999999988 77666664321 1346678888766 565665
Q ss_pred ecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCC
Q 013644 177 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 177 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 255 (439)
-.++.+.++++.....+.. ...................++|+|.+..|.++. .....+|.+..-....
T Consensus 88 E~~~~l~~~~v~~~~~i~~------~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~----- 156 (255)
T 3qqz_A 88 ERDYAIYVISLTPNSEVKI------LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN----- 156 (255)
T ss_dssp TTTTEEEEEEECTTCCEEE------EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-----
T ss_pred CCCCcEEEEEcCCCCeeee------eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-----
Confidence 5667888888765431100 000000000123355689999999986555554 4344555544110000
Q ss_pred cccccccccceeEe-----CCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccc---------cceE
Q 013644 256 PEDLQKREEPQVYS-----GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR---------HVVN 321 (439)
Q Consensus 256 ~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~ 321 (439)
....+. .......+.++++-...+++++.......+..+|.+ ++.+..+.-.. ...-
T Consensus 157 --------~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpE 227 (255)
T 3qqz_A 157 --------ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAE 227 (255)
T ss_dssp --------CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEE
T ss_pred --------ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCC
Confidence 011110 000011256777434466777788888999999976 55554443211 2568
Q ss_pred EEeecCCCcEEEEEecCCeEEEecc
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
.|+|.++|++.++ +....+..+..
T Consensus 228 Gia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 228 GVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eeEECCCCCEEEE-cCCceEEEEEe
Confidence 8999999985555 66666655543
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.46 E-value=0.00053 Score=58.83 Aligned_cols=276 Identities=10% Similarity=0.046 Sum_probs=144.2
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee-e--cCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY-L--SGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
...+.+|.|.+++..+++| ..|.| +...+.++.-... . ......+.++.|.+ +..++ ++..+.|. .-..
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~--~S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIML--HTTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEE--EESS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEE--EECC
Confidence 3579999998888877755 45654 3344444321111 1 12245788898864 44444 44556443 3323
Q ss_pred CceeeeEEe--cCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 91 DGRMDTKRL--GKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 91 ~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
+...-.... ..+...+..+.+.+++. +++++ .++.|.. ....++.-..... . ....+..+.+.|+
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~---~-------~~~~~~~~~~~~~ 173 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQ---E-------AIGVMRNLNRSPS 173 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEEC---S-------CCCCEEEEEECTT
T ss_pred CCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeec---C-------CCcceEEEEEcCC
Confidence 222111111 12334577888777664 55444 4554422 1222333222221 1 2335788999987
Q ss_pred CCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCC
Q 013644 169 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLG 248 (439)
Q Consensus 169 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~ 248 (439)
+ .+++++...+..+-.|-. ++. +... .......+..+.+.+++.+++++.++.+++.....+.
T Consensus 174 ~-~~~~~g~~G~~~~S~d~g-G~t------------W~~~--~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~- 236 (327)
T 2xbg_A 174 G-EYVAVSSRGSFYSTWEPG-QTA------------WEPH--NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE- 236 (327)
T ss_dssp S-CEEEEETTSSEEEEECTT-CSS------------CEEE--ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE-
T ss_pred C-cEEEEECCCcEEEEeCCC-CCc------------eeEC--CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCC-
Confidence 5 666665443333333421 110 0000 1123456788999999998888888888776422120
Q ss_pred CCCCCCCcccccccccceeEeCC--CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec---ccccceEEE
Q 013644 249 PSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQL 323 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~ 323 (439)
.-..+... .....+..+. +.+++.+++++. +|.| ++....|+.-..+. .....+..+
T Consensus 237 ---------------tW~~~~~~~~~~~~~~~~v~-~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 237 ---------------NWGELLSPLRRNSVGFLDLA-YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKI 298 (327)
T ss_dssp ---------------EECCCBCTTSSCCSCEEEEE-ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred ---------------eeEeccCCcccCCcceEEEE-ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEE
Confidence 00001100 0111367777 677777777665 5666 34444454433333 223567888
Q ss_pred eecCCCcEEEEEecCCeEEEecc
Q 013644 324 EPHPHIPMFATCGIEKTVKLWAP 346 (439)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iw~~ 346 (439)
.|.++++ ++.++.+|.|.-++-
T Consensus 299 ~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 299 LFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEETTE-EEEECSTTEEEEECC
T ss_pred EEECCCc-eEEEcCCceEEEEcC
Confidence 8876555 556677898776654
No 285
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.45 E-value=0.0017 Score=65.29 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=51.8
Q ss_pred ccceEEEEECCC------CCEEEEecC-CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEE
Q 013644 14 KGCVNAVEFNST------GDFLVSGSD-DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLG 86 (439)
Q Consensus 14 ~~~I~~~~~s~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 86 (439)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....-+-.....++.+.......+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 467999999863 378999986 9999999998765543322122234555555543245678888899988766
Q ss_pred Ecc
Q 013644 87 QIF 89 (439)
Q Consensus 87 ~~~ 89 (439)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 554
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.44 E-value=0.0012 Score=61.92 Aligned_cols=232 Identities=10% Similarity=-0.016 Sum_probs=141.9
Q ss_pred EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCceeeeEEecCCCCce
Q 013644 28 FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDGRMDTKRLGKHQGRV 106 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v 106 (439)
+|+.+ ....|+..++.+...........-.....++|.+ .+..|+ +-..++.|..+++...... ..+.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCc
Confidence 44444 3468999999875433222222335678999998 655555 4456788988888654332 1222223457
Q ss_pred EEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEe-ecCceEEEE
Q 013644 107 YKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVY 185 (439)
Q Consensus 107 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~ 185 (439)
..+++.+.+..++++-...+.|.+.++..... ..+... .-.....++++|..+.++++- +..+.|...
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~----------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWK----------DLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECS----------SCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeC----------CCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 78999987776777777788999999875543 222211 122368899999765555554 235678888
Q ss_pred eCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
++..... ..+ ...-.....+++++++..|..+. .+.|..+++....
T Consensus 152 ~~dG~~~---------------~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~---------------- 199 (628)
T 4a0p_A 152 AMDGSER---------------TTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN---------------- 199 (628)
T ss_dssp ETTSCSC---------------EEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------------
T ss_pred eCCCCce---------------EEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc----------------
Confidence 8765331 011 12345678999999876666553 7889999986541
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEe
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 312 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 312 (439)
. ..+..... ...+++. .. +.++++-...+.|...|..+++....
T Consensus 200 ~-~v~~~~l~--~P~glav-~~-~~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 200 R-EVIADDLP--HPFGLTQ-YQ-DYIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp C-EEEEECCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred e-EEeeccCC--CceEEEE-EC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence 1 22222222 2456663 32 45555656678899998777654433
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.00064 Score=57.98 Aligned_cols=222 Identities=12% Similarity=0.016 Sum_probs=132.3
Q ss_pred CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCC---CceeeEEeeccCCCCCCCCce
Q 013644 81 GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD---SATRLFYCSSFSENSKQPMNS 157 (439)
Q Consensus 81 g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~ 157 (439)
..|+..++........ +. ....+..++|++.+..++++-...+.|..+++... .....+.... -
T Consensus 10 ~~I~~i~~~~~~~~~~--~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~----------~ 76 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----------I 76 (316)
T ss_dssp SSEEEEETTSCCCEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----------C
T ss_pred CeEEEEECCCcceEeh--hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC----------C
Confidence 5688888876554322 32 34567899999987777778778899999998762 2222221100 1
Q ss_pred eeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEE-Eec-C
Q 013644 158 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SYN-D 235 (439)
Q Consensus 158 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~-d 235 (439)
.....+++++.+++++++-...+.|.++++..... ..+..........+++.|.+..|. +.. .
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE---------------EEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce---------------EEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 22467888876656777767788999999875321 111122234568899998665444 433 3
Q ss_pred -CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEecCCCceeEee
Q 013644 236 -ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 236 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
+.|..+++... ....+... .......++ +++++..| ++-+..+.|..+++.........
T Consensus 142 ~~~I~~~~~dG~-----------------~~~~~~~~-~~~~P~gla-~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~ 202 (316)
T 1ijq_A 142 PAKIKKGGLNGV-----------------DIYSLVTE-NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 202 (316)
T ss_dssp SCEEEEEETTSC-----------------CEEEEECS-SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCeEEEEcCCCC-----------------CeEEEEEC-CCCCceEEE-EeccCCEEEEEECCCCeEEEEecCCCceEEEe
Confidence 68888887543 11222111 112367888 78766555 44456689999998743322222
Q ss_pred cc--cccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 314 VG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 314 ~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
.. .-.....+++. .+.++++-...+.|..++..+++
T Consensus 203 ~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 21 12345677775 35666666677889888875544
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.41 E-value=4.4e-06 Score=79.49 Aligned_cols=240 Identities=13% Similarity=0.039 Sum_probs=133.3
Q ss_pred CCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec-CCCcEEEEEccc----CceeeeEEecCCCCceEEE
Q 013644 35 DKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS-ADGQVRLGQIFE----DGRMDTKRLGKHQGRVYKL 109 (439)
Q Consensus 35 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~----~~~~~~~~~~~~~~~v~~i 109 (439)
.+.|+..++.+..... +. .....+..++|.+ .+..|+.+. ..+.|+.+++.. .... ..+.........|
T Consensus 385 ~~~I~~id~~~~~~~~-~~-~~~~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS-LI-PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCCEEC-CS-CCCTTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCE
T ss_pred ccceEEEeCCCCccee-ee-ccCcceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCcceE
Confidence 3578888877654322 22 2234566889987 666666554 467899998864 1111 1121122345678
Q ss_pred EEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-ceEEEEeCc
Q 013644 110 AVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-EYARVYDIR 188 (439)
Q Consensus 110 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~ 188 (439)
++.+.+..++++-...+.|.++++........+.. . ......++++|.++.++++-... +.|..+++.
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~----------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-Q----------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC-S----------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC-C----------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 88866655666666778899999875543322211 0 12246788888765555554333 677777765
Q ss_pred CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEe-c-CCeEEEEEccCCCCCCCCCCCcccccccccce
Q 013644 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ 266 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
.... ..+....-.....|+++|++..|..+ . .+.|..+++... ..+
T Consensus 528 G~~~---------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-----------------~~~ 575 (699)
T 1n7d_A 528 GVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----------------NRK 575 (699)
T ss_dssp SCCC---------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-----------------CCE
T ss_pred CCCe---------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-----------------ceE
Confidence 4221 00111122345679999876555444 3 778999998643 111
Q ss_pred eEeC-CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEee
Q 013644 267 VYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325 (439)
Q Consensus 267 ~~~~-~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 325 (439)
.+.. ........+++ +.. +.++++....+.|..++..+++.+..+.........|++
T Consensus 576 ~~~~~~~~~~~P~gla-vd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLA-VFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EECCCSSSCSSCCCCE-EET-TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred EEEecCCcCCCceEeE-EEC-CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 2211 11111134444 333 355556666789999998888887776543333444544
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.34 E-value=0.0013 Score=58.17 Aligned_cols=229 Identities=12% Similarity=0.010 Sum_probs=135.6
Q ss_pred EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC---ceeeEEeeccCC
Q 013644 73 KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS---ATRLFYCSSFSE 149 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~ 149 (439)
+|+.+. ...|+..++....... +......+..++|++.+..++++-...+.|+.+++.... ....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~---~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---- 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---- 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS----
T ss_pred eeEEec-cceeEEEccCCcceeE---eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC----
Confidence 444333 3678888886554332 223456788999999777677777778899999887532 11111111
Q ss_pred CCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCE
Q 013644 150 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 229 (439)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 229 (439)
.......+++.+.+++++++-...+.|.+.++..... ..+..........|++.|.+..
T Consensus 157 ------~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~---------------~~l~~~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 157 ------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------------KTLFRENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp ------SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE---------------EEEEECSSCCEEEEEEETTTTE
T ss_pred ------CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce---------------EEEEeCCCCCcceEEEecccCe
Confidence 1223677888876557777777788999999875331 1111223345789999996655
Q ss_pred EEEec---CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe-CCCCeEEEEecC
Q 013644 230 LISYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKK 305 (439)
Q Consensus 230 l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~-~~dg~i~iwd~~ 305 (439)
|.... .+.|...++... ....+... .-.....++ +++++..|+.+ ...+.|..+++.
T Consensus 216 ly~td~~~~~~I~~~~~dG~-----------------~~~~~~~~-~l~~P~gla-vd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGV-----------------DIYSLVTE-NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp EEEEECSSSCCEEEEETTSC-----------------SCEEEECS-SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCCEEEEEeCCCC-----------------ccEEEEEC-CCCceEEEE-EEeCCCEEEEEECCCCEEEEEeCC
Confidence 54443 367888887643 12222111 112367888 78766655544 556899999987
Q ss_pred CCceeEeecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 306 GGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 306 ~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
.......... .-.....+++. .+.++++-...+.|..++..+++
T Consensus 277 G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 277 GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 5443333322 12344567763 34555666667788888854443
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.0009 Score=60.02 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred ceEEEEECCC-C-CEEEEecCCCeEEEEeCCCCcceeeeecC---CcccEEEEEE-------eecCCCcEEEEecCCC--
Q 013644 16 CVNAVEFNST-G-DFLVSGSDDKLVIFWDWKDRREKFSYLSG---HLDNIFQTRI-------MPFTDDRKIITSSADG-- 81 (439)
Q Consensus 16 ~I~~~~~s~~-~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~~~~l~s~~~dg-- 81 (439)
....|+|+|. + +++++-...+.|++.|..++... .+... .......++| .+ ++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCCCC
Confidence 3568999983 4 44444444467888888776432 22222 2235889999 98 888666665543
Q ss_pred -----cEEEEEccc-Cceee---eEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEcc-------CCCc-------
Q 013644 82 -----QVRLGQIFE-DGRMD---TKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR-------SDSA------- 138 (439)
Q Consensus 82 -----~i~iw~~~~-~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------- 138 (439)
.|.+.+... +.... ...+... .....++++|++.+++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255555333 12110 0112211 2345788999777788888889999999998 5543
Q ss_pred ----eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCc
Q 013644 139 ----TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188 (439)
Q Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 188 (439)
...+. ... .......++|+|++..++++-.....|+.++..
T Consensus 296 ~~g~~~~l~--~~~-------~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLF--TIA-------DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEE--ECS-------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeE--ecC-------CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 11111 111 122357899999984355555667788886654
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.31 E-value=0.0024 Score=59.85 Aligned_cols=162 Identities=11% Similarity=0.098 Sum_probs=98.7
Q ss_pred cceEEEEECCCCCEE-EEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEE-EecCCCcEEEEEcccCc
Q 013644 15 GCVNAVEFNSTGDFL-VSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKII-TSSADGQVRLGQIFEDG 92 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~ 92 (439)
..+.+|+|++.+..| .+-...+.|..+++........+....-.....+++.+ .+..|+ +-...+.|.+.++....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW--LGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCCCC
Confidence 456789999855444 45455678988988765322233333335678899987 555554 55567899999986543
Q ss_pred eeeeEEecCCCCceEEEEEccCCCcEEEEe-CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 93 RMDTKRLGKHQGRVYKLAVEPGSPYIIYSC-GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 93 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
... .+...-.....|++.|.+.+++++- +..+.|...++.......... . .-...+.+++++++++
T Consensus 118 ~~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~----------~~~~P~Glald~~~~~ 184 (619)
T 3s94_A 118 RKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S----------EIYWPNGLTLDYEEQK 184 (619)
T ss_dssp CEE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S----------SCSSEEEEEEETTTTE
T ss_pred EEE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-C----------CCCCCcEEEEEccCCE
Confidence 221 1223445678899999866666554 234667767765433322221 1 1223688999987756
Q ss_pred EEEEeecCceEEEEeCcCCc
Q 013644 172 YFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~ 191 (439)
++++-...+.|..+|+....
T Consensus 185 LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 185 LYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp EEEEETTTCCEEEESSSCCE
T ss_pred EEEEeCCCCeEEEecCCCCc
Confidence 66766677789999987543
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.30 E-value=0.001 Score=55.26 Aligned_cols=274 Identities=9% Similarity=0.085 Sum_probs=165.1
Q ss_pred CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 34 DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
.+.+|.|-|+.++..+.+....-.. .-.+| ....||.-. ..++.++|+++...+....+. ..|.-=.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP--~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISADS----AIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCSE----EEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECS
T ss_pred CCCEEEEEECCCCCCccccccccce----eeeCC--CccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecC
Confidence 3448999999887665443222222 33477 677776654 678999999988777555543 6777777776
Q ss_pred CCCcEEEEeCCCCcEEEEEccCC-CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee------cCceEEEEe
Q 013644 114 GSPYIIYSCGEDGFVQHFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYD 186 (439)
Q Consensus 114 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d 186 (439)
... |+-.+ +..|+.|++... .+.+.+..+... ....|..-..+++...++++|- -.|.+.+|.
T Consensus 117 ~~~--L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 186 (365)
T 2xzh_A 117 LNT--VALVT-DNAVYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 186 (365)
T ss_dssp SSE--EEEEE-SSEEEEEESSTTCCCEEEEECCGGG-------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCe--EEEEc-CCcEEEEcccCCCCCceeeecchhc-------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEe
Confidence 654 33332 457999999864 344444332222 2456777888888744455543 247788999
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccC---CCEEEEec----CCeEEEEEccCCCCCCCCCCCcccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SELLISYN----DELVYLFEKNMGLGPSPLSLSPEDL 259 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~ 259 (439)
.+.+. .+.+.+|......+....+ ..+++.+. .+++++.++....... ..+..
T Consensus 187 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~-~~f~k--- 246 (365)
T 2xzh_A 187 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPK--- 246 (365)
T ss_dssp TTTTE----------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC-CCCCC---
T ss_pred ecccc----------------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC-CCccc---
Confidence 87643 3334555555544443322 13444442 3689999985531110 00000
Q ss_pred cccccce-eEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecC
Q 013644 260 QKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 338 (439)
+... .+..........++. .|+.-..++.-+.-|.|++||++++.++..-+-...+|..-+-+....=++.....
T Consensus 247 ---k~vdi~fppea~~DFPVamq-vs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~ 322 (365)
T 2xzh_A 247 ---KAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 322 (365)
T ss_dssp ---EEEEECCCTTCTTCCEEEEE-EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred ---ccceeeCCccccCCceEEEE-ecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCC
Confidence 0111 111111222355666 67777888888889999999999999987766556677666655444445556688
Q ss_pred CeEEEeccCCCCC
Q 013644 339 KTVKLWAPMPTDF 351 (439)
Q Consensus 339 g~i~iw~~~~~~~ 351 (439)
|.|.--.++...+
T Consensus 323 GqVl~v~v~~~~i 335 (365)
T 2xzh_A 323 GQVLSVCVEEENI 335 (365)
T ss_dssp CEEEEEEECTTTH
T ss_pred CEEEEEEECcccE
Confidence 8888777766543
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.24 E-value=0.0021 Score=61.83 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=118.8
Q ss_pred ccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCc---ceeeeecCCcccEEEEEEeecCCC-cEEEEecCCCcEEEEEc
Q 013644 14 KGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRR---EKFSYLSGHLDNIFQTRIMPFTDD-RKIITSSADGQVRLGQI 88 (439)
Q Consensus 14 ~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iw~~ 88 (439)
...+.+|+|.+. +.++++-...+.|+.+++.... ....++.........|++.+ .+ .++++-...+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~--~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee--cCCcEEEEecCCCeEEEEeC
Confidence 345678999884 5555666667889988887531 12222332334566788876 55 45555566789999998
Q ss_pred ccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
....... .+.........|++.|.+.+++++-... +.|...++........+. . .-...+.|++++
T Consensus 501 dG~~~~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~----------~l~~P~GLavD~ 567 (791)
T 3m0c_C 501 KGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-E----------NIQWPNGITLDL 567 (791)
T ss_dssp TSSSEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-S----------SCSCEEEEEEET
T ss_pred CCCeEEE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-C----------CCCCceEEEEec
Confidence 6543322 2333445678999999876666665333 778888886544332221 1 122468899998
Q ss_pred CCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-CCeEEEEEccCC
Q 013644 168 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMG 246 (439)
Q Consensus 168 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 246 (439)
.+++++++=.....|..+++......... .....-.....|++..+ +++++-. .+.|...+..++
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~-------------~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTIL-------------EDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEE-------------ECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEEe-------------cCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence 77566666566678999998654311000 00011123345555333 3333333 678888876655
No 294
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.23 E-value=0.0035 Score=63.05 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=68.2
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCC----CcEEEEecC-CCcEEEEEccc
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD----DRKIITSSA-DGQVRLGQIFE 90 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~~l~s~~~-dg~i~iw~~~~ 90 (439)
.|.+.+.+ +.+++.++ .+.+.++.+..+.........-...|.|+++.|.++ +++++.|.. |++|+|+++.+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 34444444 23455554 567878777654311111122346799999986322 468899986 99999999987
Q ss_pred CceeeeEEecCCCCceEEEEEcc-CCCcEEEEeCCCCcEEEEEcc
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFVQHFDLR 134 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~ 134 (439)
.+.+....+... ....++.+.. .+...|..|-.||.+.-+.+.
T Consensus 592 l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 592 FELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 666554455321 2334443322 222356688899988766654
No 295
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.18 E-value=0.0011 Score=56.26 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=106.9
Q ss_pred cceEEEEECCCCCEEEEecC-C-CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc
Q 013644 15 GCVNAVEFNSTGDFLVSGSD-D-KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG 92 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~-d-g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 92 (439)
+.+..+++.++|+++++... + ..|..++..+++...............++..+ ++..+++-..++.|..+|...+.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCc
Confidence 46788999999997665533 2 24666776666532211111222234455444 55555555568888888875432
Q ss_pred eeeeE--------EecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-CCc--eeeEEeeccCCCCCCCCceeeeE
Q 013644 93 RMDTK--------RLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSA--TRLFYCSSFSENSKQPMNSIRLN 161 (439)
Q Consensus 93 ~~~~~--------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~v~ 161 (439)
..... .....-...+.+ +|++++++++-...+.|..+++.. ++. ...+.. .....
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------------~~~P~ 215 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------------QTNID 215 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------------SCCCS
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------------cCCCC
Confidence 11100 001111234555 788887777888889999999875 322 111111 01245
Q ss_pred EEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEc---cCCCEEEEec
Q 013644 162 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS---NTSELLISYN 234 (439)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~ 234 (439)
.+++++++ +++++....+.|.++|.. ++... ...........++++|. |++..|+..+
T Consensus 216 gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~-------------~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 216 DFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTI-------------IAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp SEEEBTTC-CEEEECBTTCCEEEECTT-CCEEE-------------EECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CeEECCCC-CEEEEeCCCCeEEEECCC-CCEEE-------------EeecccccCCceEEEEecccCCCCEEEEEC
Confidence 68888987 677776667889999865 33100 00001123457889998 7876555543
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.06 E-value=0.0082 Score=56.31 Aligned_cols=160 Identities=12% Similarity=0.063 Sum_probs=101.7
Q ss_pred cceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 15 GCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 15 ~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
..+.+|+|++.+ .++++-..++.|..+++..... ..+..........+++.+. .+++.++-...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGMAVDWL-GKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSTTC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceEEEEeC-CCEEEEEECCCCEEEEEecCCCcE
Confidence 356789999854 4555656678999999875432 2222222234567888761 344555556678899999865432
Q ss_pred eeeEEecCCCCceEEEEEccCCCcEEEEe-CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 94 MDTKRLGKHQGRVYKLAVEPGSPYIIYSC-GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
.. .+...-.....|++.|....++++- +..+.|...++.......... .-...+.++++++++++
T Consensus 115 ~~--l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~------------~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 115 QV--LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP------------NVGRANGLTIDYAKRRL 180 (628)
T ss_dssp EE--EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------------SCSSEEEEEEETTTTEE
T ss_pred EE--EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC------------CCCCcceEEEccccCEE
Confidence 21 1223445678999999766566554 335678888876554333221 12246889999977566
Q ss_pred EEEeecCceEEEEeCcCC
Q 013644 173 FAVGGSDEYARVYDIRKC 190 (439)
Q Consensus 173 l~~~~~dg~i~i~d~~~~ 190 (439)
+++-...+.|..+|+...
T Consensus 181 Y~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEEECCCCEEEEEcCCCC
Confidence 666667789999998753
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.01 E-value=0.0043 Score=51.62 Aligned_cols=264 Identities=10% Similarity=0.059 Sum_probs=158.5
Q ss_pred CCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCcee
Q 013644 79 ADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSI 158 (439)
Q Consensus 79 ~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (439)
.+.+|.|.|+..+.....+.+. -.+.-.+|..+ ++|.-. ..++.++|+++.+.++.... ..
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~-----AdsAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~------------~e 107 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM------------TD 107 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECC-----CSEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC------------SS
T ss_pred CCCEEEEEECCCCCCccccccc-----cceeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec------------CC
Confidence 3447889999877665333332 23445688876 554443 67899999999887776653 23
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec----
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---- 234 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---- 234 (439)
.|.--.|-.. +.|+..+. ..|+-|++.... .|.+.+.....+. ...|..-..+++.++++..+
T Consensus 108 ~VvfWkWis~--~~L~lVT~-taVyHWs~~~~s--------~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~ 174 (365)
T 2xzh_A 108 DVTFWKWISL--NTVALVTD-NAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQ 174 (365)
T ss_dssp CEEEEEECSS--SEEEEEES-SEEEEEESSTTC--------CCEEEEECCGGGT--TCEEEEEEECTTSCEEEEEEEEEE
T ss_pred ccEEEEecCC--CeEEEEcC-CcEEEEcccCCC--------CCceeeecchhcc--cceEEEEEECCCCCEEEEEeEecc
Confidence 4666666554 45555443 479999987522 3444443333332 57788888999999876431
Q ss_pred ----CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC-----ceEEEeCC---CCeEEEE
Q 013644 235 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSD---CGHLFIW 302 (439)
Q Consensus 235 ----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~-----~~l~~~~~---dg~i~iw 302 (439)
.|.+.+|..+.. .-+.+.+|... ...+. .+| ++++.+.. .+++++-
T Consensus 175 ~~~v~G~mQLYS~er~-----------------~sQ~ieGhaa~--F~~~~---~~g~~~~~~lf~fa~r~~~g~kLhIi 232 (365)
T 2xzh_A 175 QNRVVGAMQLYSVDRK-----------------VSQPIEGHAAS--FAQFK---MEGNAEESTLFCFAVRGQAGGKLHII 232 (365)
T ss_dssp TTEEEEEEEEEETTTT-----------------EEEEECCSEEE--EEEEC---CTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCccceeEEEEeeccc-----------------ccceeeeeeee--eEEEe---cCCCCCCceEEEEEEecCCCcEEEEE
Confidence 367889988764 55677777643 22221 222 23333322 2588888
Q ss_pred ecCCC---ce------eEeecc---cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccC
Q 013644 303 KKKGG---KL------VRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE 370 (439)
Q Consensus 303 d~~~~---~~------~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (439)
++... .. +..+-. -.+-..++..|+.-..+..-+.-|.|.+||++++.......-....+........
T Consensus 233 Ei~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~ 312 (365)
T 2xzh_A 233 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 312 (365)
T ss_dssp ECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGG
T ss_pred EcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCC
Confidence 87432 11 111111 1244567888888888888889999999999988752221111111122212223
Q ss_pred cceEEEeCCCcEEEEEEecccceeee
Q 013644 371 DHSRITLTPDVIMHVLRLQRRQTLAY 396 (439)
Q Consensus 371 ~~~~~~~s~dg~v~~w~~~~~~~~~~ 396 (439)
..-++.....|.|.-..+.......|
T Consensus 313 ~~Gi~~Vnr~GqVl~v~v~~~~ivpy 338 (365)
T 2xzh_A 313 TAGIIGVNRKGQVLSVCVEEENIIPY 338 (365)
T ss_dssp GTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred CCcEEEEcCCCEEEEEEECcccEehh
Confidence 44566777788888877777766553
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=9.6e-05 Score=70.35 Aligned_cols=222 Identities=12% Similarity=0.013 Sum_probs=123.4
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC----CCceeeEEeeccCCCCCCCC
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS----DSATRLFYCSSFSENSKQPM 155 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~ 155 (439)
.+.|+..++....... +......+..++|.+.+..++++-...+.|+.+++.. ......+..
T Consensus 385 ~~~I~~id~~~~~~~~---~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~----------- 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------- 450 (699)
T ss_dssp TTC-CEECTTSCCEEC---CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-----------
T ss_pred ccceEEEeCCCCccee---eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-----------
Confidence 3567777776544332 2222345678999987776666666678899999875 111111100
Q ss_pred ceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-
Q 013644 156 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 234 (439)
Q Consensus 156 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 234 (439)
.......+++.+.+++++++-...+.|.++++...... .+..........++++|.+.+|+.+.
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---------------~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---------------TLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE---------------EECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE---------------EEEeCCCCCcceEEEccCCCcEEEccc
Confidence 01124567787655567777667788999998754311 11111123356788888655444432
Q ss_pred -C-CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceE-EEeCCCCeEEEEecCCCceeE
Q 013644 235 -D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVR 311 (439)
Q Consensus 235 -d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 311 (439)
. +.|..+++... ....+... .......|+ ++|++..| ++-+..+.|..+++.......
T Consensus 516 ~~~~~I~~~~~dG~-----------------~~~~l~~~-~l~~PnGla-vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~ 576 (699)
T 1n7d_A 516 GTPAKIKKGGLNGV-----------------DIYSLVTE-NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVNGGNRKT 576 (699)
T ss_dssp SSSCCEEBCCSSSC-----------------CCCEESCS-SCSSCCCEE-ECTTTCCEEEEETTTTEEEEECSSSSCCEE
T ss_pred CCCCeEEEEeCCCC-----------------CeeEEEeC-CCCCccEEE-EeccCCEEEEEecCCCeEEEEccCCCceEE
Confidence 2 67777776542 11111111 111256777 78875544 455567899999987543332
Q ss_pred eecc--cccceEEEeecCCCcEEEEEecCCeEEEeccCCCC
Q 013644 312 LMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 350 (439)
Q Consensus 312 ~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 350 (439)
.+.. .......|++..+ .++++....+.|..++..+++
T Consensus 577 ~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 577 ILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 2221 1123345666544 455566667888888875443
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.00044 Score=57.98 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=105.2
Q ss_pred eccccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcceeeeecC----C--cccEEEEEE---eecCCCcEEEEec--
Q 013644 11 HGHKGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFSYLSG----H--LDNIFQTRI---MPFTDDRKIITSS-- 78 (439)
Q Consensus 11 ~~h~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----h--~~~v~~~~~---~~~~~~~~l~s~~-- 78 (439)
++..----+++|.+. +.++++.-..++|..|+...+......+.+ . ...+..+.| .| ++.++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~~ 86 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKNA 86 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEET
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEccc
Confidence 333344457899874 444444447899999998755332222222 1 124678999 57 777777543
Q ss_pred -----------CCCcEEEEEcc---cCceeeeEEecCCC-----------CceEEEEEccCCCcEEEEeCCC-CcEEEEE
Q 013644 79 -----------ADGQVRLGQIF---EDGRMDTKRLGKHQ-----------GRVYKLAVEPGSPYIIYSCGED-GFVQHFD 132 (439)
Q Consensus 79 -----------~dg~i~iw~~~---~~~~~~~~~~~~~~-----------~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd 132 (439)
.+..|..+|+. +++......+.... .....++..++|+ ..++++.- +.|...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEe
Confidence 25779999998 67666544443222 3488999999998 56677777 7766666
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcC
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 189 (439)
.... ....+.. ..... ......+.++++|++ +.|++....|.|..+|+..
T Consensus 166 pdG~-~~~~~~~-~~~~~----~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADGK-TVSTFAW-ESGNG----GQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSC-CEEEEEE-CCCCS----SSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred CCCC-EEeeeee-cCCCc----ccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 5543 2222221 11110 123346789999988 5555555599999999883
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.93 E-value=0.0052 Score=52.06 Aligned_cols=192 Identities=11% Similarity=0.176 Sum_probs=108.4
Q ss_pred CCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecC--CCc---EEE-EecC--CCcEEEEEcccCceeeeE
Q 013644 26 GDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT--DDR---KII-TSSA--DGQVRLGQIFEDGRMDTK 97 (439)
Q Consensus 26 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~-s~~~--dg~i~iw~~~~~~~~~~~ 97 (439)
..+++.....+-+.+||+ +++.+..+ .. +.++.+..-|.- .+. +++ +.-. +++|.+|++...... ..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 345665666788999999 66665553 32 456666666500 222 223 3333 578999987421111 12
Q ss_pred EecC------CC-CceEEEEE--ccC-CCcEEEEeCCCCcEEEEEccC---C----CceeeEEeeccCCCCCCCCceeee
Q 013644 98 RLGK------HQ-GRVYKLAV--EPG-SPYIIYSCGEDGFVQHFDLRS---D----SATRLFYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 98 ~~~~------~~-~~v~~i~~--~~~-~~~~l~s~~~dg~i~iwd~~~---~----~~~~~~~~~~~~~~~~~~~~~~~v 160 (439)
.+.. .. ..+..+++ +|. +...+++...+|.+..|++.. + +.++.+.. ...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l------------gsq~ 182 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM------------NSQT 182 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC------------SSCE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC------------CCCc
Confidence 2311 11 45667777 664 444566778889999999843 2 23333332 2346
Q ss_pred EEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc-ccCCCccEEEEEE--ccCCC-EE-EEec-
Q 013644 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAY--SNTSE-LL-ISYN- 234 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~-~l-~~~~- 234 (439)
-.+...+.. ..|+.+-++..|..|+.+-.... ... ..... ...-...+..|++ .++++ +| +++.
T Consensus 183 EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~-------~~~--~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 183 EGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGS-------NGT--VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEEEETTT-TEEEEEETTTEEEEEECSTTSCS-------CCE--EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred ceEEEcCCC-CeEEEecccceEEEEeCCcCCCC-------Cce--EEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 778888866 68888888877777775421100 000 00000 0111235777777 45544 44 4443
Q ss_pred CCeEEEEEcc
Q 013644 235 DELVYLFEKN 244 (439)
Q Consensus 235 d~~i~i~d~~ 244 (439)
++...+||..
T Consensus 253 ~~s~~Vydr~ 262 (355)
T 3amr_A 253 NSSYAIYDRQ 262 (355)
T ss_dssp GTEEEEEESS
T ss_pred CCEEEEEECC
Confidence 8899999975
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.91 E-value=0.0092 Score=51.79 Aligned_cols=274 Identities=9% Similarity=0.080 Sum_probs=166.3
Q ss_pred CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 34 DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
....|.|-|+.++..+.+....-. +.-.+| ..+.||.-. ..++.++|+++...+....+. ..|.-=.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP--~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS----EEEECS--SSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceecccccc----eeeeCC--CCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC
Confidence 345899999988766544322222 334567 666666554 679999999988777554443 5676667766
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee------cCceEEEEe
Q 013644 114 GSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYD 186 (439)
Q Consensus 114 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d 186 (439)
+.. |+-.+ +..|+.|++.... +.+.+..+... ....|..-..+++...++++|- -.|.+.+|.
T Consensus 116 ~~~--l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 116 LNT--VALVT-DNAVYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp TTE--EEEEC-SSEEEEEESSSSCCCEEEEECCGGG-------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCe--EEEEc-CCeeEEecccCCCCchhheecchhc-------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 653 43333 5679999997543 44444332222 2456777888888744444443 347889999
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCC---CEEEEec----CCeEEEEEccCCCCCCCCCCCcccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLISYN----DELVYLFEKNMGLGPSPLSLSPEDL 259 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~ 259 (439)
.+.+. .+.+.+|......+....+. .+++.+. .+.+.+.++....... ..+...
T Consensus 186 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~-~~f~kk-- 246 (494)
T 1bpo_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPKK-- 246 (494)
T ss_dssp STTCC----------------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC-CCCCCE--
T ss_pred ccccc----------------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC-CCccce--
Confidence 87643 33446666655555544322 3444442 3789999986541110 000000
Q ss_pred cccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCC
Q 013644 260 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
..-..+..........++. .|+.-..++.-+.-|.|++||++++.++..-+-...+|..-+-+....=++.....|
T Consensus 247 ---~vdv~fppe~~~DFPvamq-vs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 247 ---AVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp ---EEECCCCTTSTTCCEEEEE-EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred ---eeeeeCCcccccCceeEEE-ecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 0000111111222355666 677788888888999999999999999876665566776666655555555666888
Q ss_pred eEEEeccCCCC
Q 013644 340 TVKLWAPMPTD 350 (439)
Q Consensus 340 ~i~iw~~~~~~ 350 (439)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 88777776554
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.90 E-value=0.016 Score=54.26 Aligned_cols=159 Identities=8% Similarity=0.009 Sum_probs=92.4
Q ss_pred cceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC--CCcEEEEEcccC
Q 013644 15 GCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA--DGQVRLGQIFED 91 (439)
Q Consensus 15 ~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~ 91 (439)
.....+++.+.+ ++.++-...+.|.+.++..... ..+....-.....+++.| .+..|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence 457789999854 4555556678999999876533 222223444567899988 6566655443 356666666433
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
... ......-...+.|+++++++.++++-...+.|...++.......... .... | ..++++..+ .
T Consensus 161 ~~~--~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~-------~---P~gi~~~~~--~ 225 (619)
T 3s94_A 161 SRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLP-------H---PFALTLFED--I 225 (619)
T ss_dssp SCE--EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------------CCCEEESSS--E
T ss_pred ceE--EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCC-------C---ceEEEEeCC--E
Confidence 222 11223345678999999877777777778889998886543322221 0000 1 224455442 4
Q ss_pred EEEEeecCceEEEEeCcCCc
Q 013644 172 YFAVGGSDEYARVYDIRKCH 191 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~ 191 (439)
++++-...+.|...|..+++
T Consensus 226 ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 226 LYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEECTTTCSEEEEESSSCC
T ss_pred EEEecCCCCEEEEEECCCCc
Confidence 55554455666666665543
No 303
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.87 E-value=0.011 Score=51.21 Aligned_cols=271 Identities=14% Similarity=0.152 Sum_probs=130.9
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceee-eEE----ecCCCCceEEEEEccC---CCcEEEEeCC-----
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD-TKR----LGKHQGRVYKLAVEPG---SPYIIYSCGE----- 124 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~----~~~~~~~v~~i~~~~~---~~~~l~s~~~----- 124 (439)
.....|+|.| +++.|+.+...|.|++++.. +.... ... ..........|+++|+ +..+.++-..
T Consensus 18 ~~P~~i~~~p--dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLP--DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECS--TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcC--CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3467899999 99834444567899988753 22110 010 1112345689999996 4445544322
Q ss_pred --CCcEEEEEccCCC--c--eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-------------CceEEEE
Q 013644 125 --DGFVQHFDLRSDS--A--TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-------------DEYARVY 185 (439)
Q Consensus 125 --dg~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~ 185 (439)
...|..|++.... . ...+. .... ......|. -..++|.|++ .++++.+. .|.|.-+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~-~~~p-~~~~~~h~--~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVF-RQMP-KLSTGNHF--GGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEE-ECSS-CCBSSSCC--CCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEEE-EECC-CCCCCccc--CccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 2356666665431 1 11111 0111 00001122 3569999987 55555433 2456666
Q ss_pred eCcCCcccCCCCCCCCcccc--cccccccCCCccEEEEEEcc-CCCEEEEec--CCeEEEEEccCCCCCC---C------
Q 013644 186 DIRKCHWYSPISSDTPVDTF--CPRHLIGKNNIHITGLAYSN-TSELLISYN--DELVYLFEKNMGLGPS---P------ 251 (439)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--d~~i~i~d~~~~~~~~---~------ 251 (439)
+.... ...+.+.... ....+....-.....++|.| +++++++-. ++.=.|.-+..+..-- .
T Consensus 170 ~~dG~-----~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~ 244 (353)
T 2g8s_A 170 TDQGE-----IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINY 244 (353)
T ss_dssp ETTSC-----CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCT
T ss_pred CCCCC-----CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCC
Confidence 65431 0111111000 00111111223477899999 677666543 2212222222221100 0
Q ss_pred --CCCCc---ccccc-cccceeEeCCCCcceeeeEEeeC------CCCceEEEeCCCCeEEEEecCCCceeEe---eccc
Q 013644 252 --LSLSP---EDLQK-REEPQVYSGHRNSQTVKGVNFFG------PNDEYVMSGSDCGHLFIWKKKGGKLVRL---MVGD 316 (439)
Q Consensus 252 --~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~~~s------~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h 316 (439)
..+.. ..... ..+...+..+. ....+.++. .+|+++++.-..+.|...++..++.... +...
T Consensus 245 ~~~~~~~~~~~~~~~~~~P~~~~~~~~---ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 321 (353)
T 2g8s_A 245 SGFKIPEAKGEIVAGTEQPVFYWKDSP---AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDR 321 (353)
T ss_dssp TSSCCTTCCBSSCTTSCCCSEEESSCC---CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGG
T ss_pred CCCccCcccCCCCCCccCCeEEeCCCc---CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCC
Confidence 00000 00000 11222233232 366677433 2578888877888998888876644322 2222
Q ss_pred ccceEEEeecCCCcEEEEEe-cCCeEEEecc
Q 013644 317 RHVVNQLEPHPHIPMFATCG-IEKTVKLWAP 346 (439)
Q Consensus 317 ~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~ 346 (439)
...+..+++.|||.++++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 34789999999998766543 344 44444
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.86 E-value=0.004 Score=52.76 Aligned_cols=214 Identities=12% Similarity=0.200 Sum_probs=115.0
Q ss_pred CcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccC----CC---cEEEEeCC--CCcEEEEEcc--CCCce
Q 013644 71 DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG----SP---YIIYSCGE--DGFVQHFDLR--SDSAT 139 (439)
Q Consensus 71 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~~l~s~~~--dg~i~iwd~~--~~~~~ 139 (439)
..+++.....+-+.+||+ +++.+. .+.. +.++.+..-|+ ++ ..+++... +++|.+|++. ++. +
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~--~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLH--SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEE--EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEE--EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 345666667789999999 666653 3432 56777777663 21 12444444 6889999874 332 2
Q ss_pred eeEEeeccCCCCCCCCceeeeEEEee--cCCCC-cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCc
Q 013644 140 RLFYCSSFSENSKQPMNSIRLNAIVI--DPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI 216 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (439)
..+.....+... ....+..+++ +|..+ .++++...+|.+..|++..... ........+.+ . -..
T Consensus 114 ~~i~~~~~pv~t----~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~-------g~~~~~lVR~f-~-lgs 180 (355)
T 3amr_A 114 QSMTDPDHPIAT----AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN-------GYISGKKVRAF-K-MNS 180 (355)
T ss_dssp EECSCTTSCEEC----CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT-------SCEEEEEEEEE-E-CSS
T ss_pred eeccccccCcCC----CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC-------CcccceEEEEe-c-CCC
Confidence 222110000000 0133566776 77543 4688888889999999853210 00000011111 1 134
Q ss_pred cEEEEEEccCCCEEEEec-CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEee-CCCCc-eEEEe
Q 013644 217 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDE-YVMSG 293 (439)
Q Consensus 217 ~i~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-s~~~~-~l~~~ 293 (439)
.+..+...+....|..+. +..|..++....... ....+..+....-...+..|+.+ .++++ ||++.
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~-----------~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS-----------NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS-----------CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCC-----------CceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 678888888777777775 666666664422100 00122222111111126666633 55655 55555
Q ss_pred C-CCCeEEEEecC-CCceeEeec
Q 013644 294 S-DCGHLFIWKKK-GGKLVRLMV 314 (439)
Q Consensus 294 ~-~dg~i~iwd~~-~~~~~~~~~ 314 (439)
+ .+++..+||.+ +.+.+..|.
T Consensus 250 sQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 250 SQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCEEEEEECCCCCcEEEEEE
Confidence 5 57899999996 566665553
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.85 E-value=0.0091 Score=51.24 Aligned_cols=199 Identities=13% Similarity=0.179 Sum_probs=107.5
Q ss_pred EEEEEEeecCCCcEEEEe------------cCCCcEEEEEcccC--ceeeeEEecC-----CCCceEEEEEcc--CCC-c
Q 013644 60 IFQTRIMPFTDDRKIITS------------SADGQVRLGQIFED--GRMDTKRLGK-----HQGRVYKLAVEP--GSP-Y 117 (439)
Q Consensus 60 v~~~~~~~~~~~~~l~s~------------~~dg~i~iw~~~~~--~~~~~~~~~~-----~~~~v~~i~~~~--~~~-~ 117 (439)
.-.+...| +|..++++ ..+|.|.++|+.+. +... ..+.+ ..-....+.+.+ ++. +
T Consensus 52 ~EDi~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 52 SEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCEEEECT--TSEEEEEECCC-----------CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred cceeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34555666 66554444 26899999998743 2222 12222 223567777766 343 3
Q ss_pred EEEEeCC--CCcEEEEEccCCCceeeEE-eeccCCCCCCCCceeeeEEEeecCCCCcEEEEee-----------------
Q 013644 118 IIYSCGE--DGFVQHFDLRSDSATRLFY-CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------------- 177 (439)
Q Consensus 118 ~l~s~~~--dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------------- 177 (439)
++++-.. +.+|.+|++........+. ..... .-...+.+.+.++| .++++..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-------~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-------LLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-------TCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC-------CCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccC
Confidence 4544333 5788888887654332222 11111 12347888888887 5555543
Q ss_pred cCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCC
Q 013644 178 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLS 255 (439)
Q Consensus 178 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~ 255 (439)
..|.|..+|.. +. . .....-...+.++|+|+++.|..+. .+.|..|++....
T Consensus 201 ~~g~vyr~d~~--~~---------------~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g-------- 254 (355)
T 3sre_A 201 AWSFVTYYSPN--DV---------------R-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW-------- 254 (355)
T ss_dssp CCEEEEEECTT--CC---------------E-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS--------
T ss_pred CccEEEEEECC--eE---------------E-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC--------
Confidence 12445545432 10 0 1112234468899999998877764 7899999986321
Q ss_pred cccccccccceeEeCCCCcceeeeEEeeCC-CCceEEEeCCC-CeEEEEec
Q 013644 256 PEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDC-GHLFIWKK 304 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~-~~~~l~~~~~d-g~i~iwd~ 304 (439)
.....+.+.. ....-.++ +.+ +|++.+++..+ +.|..|+.
T Consensus 255 -----~l~~~~~~~~---~g~PDGi~-vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 255 -----TLTPLRVLSF---DTLVDNIS-VDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp -----CEEEEEEEEC---SSEEEEEE-ECTTTCCEEEEEESCHHHHHSCCT
T ss_pred -----cEecCEEEeC---CCCCceEE-EeCCCCcEEEEecCCceEEEEECC
Confidence 0011122311 22366677 788 58877755433 34444543
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.83 E-value=0.011 Score=50.47 Aligned_cols=238 Identities=11% Similarity=0.058 Sum_probs=121.6
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeec--CCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccC
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLS--GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFED 91 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 91 (439)
...+.+|.|.+ ++.++. +..+.|.. ..+.++.-..... .+...+..+.+.+ ++..++.+. ++.| |....+
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~g~v--~~S~Dg 150 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG--NGSAEMITN-VGAI--YRTKDS 150 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE--TTEEEEEET-TCCE--EEESST
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC--CCCEEEEeC-CccE--EEEcCC
Confidence 34688899986 444554 45564433 3333332222111 2335578888877 676666554 5544 333232
Q ss_pred ceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCc
Q 013644 92 GRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPN 171 (439)
Q Consensus 92 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (439)
...-..........+..+++.+++. +++.+ .+|.+..-.-..+..-..+.. . ....+..+.+.+++ .
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW~~~~~---~-------~~~~~~~~~~~~~g-~ 217 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAWEPHNR---T-------TSRRLHNMGFTPDG-R 217 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSCEEEEC---C-------SSSCEEEEEECTTS-C
T ss_pred CCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCceeECCC---C-------CCCccceeEECCCC-C
Confidence 2222222334556789999999876 45454 445444322111222222211 0 23357788888876 4
Q ss_pred EEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCC
Q 013644 172 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 250 (439)
Q Consensus 172 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 250 (439)
++ .++.+|.+++.+...++.-.. .... ......+..+.+.+++.+++++.++.+. +..+.+.
T Consensus 218 ~~-~~~~~G~~~~s~~D~G~tW~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~--- 280 (327)
T 2xbg_A 218 LW-MIVNGGKIAFSDPDNSENWGE------------LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQ--- 280 (327)
T ss_dssp EE-EEETTTEEEEEETTEEEEECC------------CBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTS---
T ss_pred EE-EEeCCceEEEecCCCCCeeEe------------ccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCc---
Confidence 44 455678777764322221100 0000 0112357889999988988888888763 3333331
Q ss_pred CCCCCcccccccccceeEeCC-CCcceeeeEEeeCCCCceEEEeCCCCeEEEEec
Q 013644 251 PLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~ 304 (439)
.-..+... .....+.++. +.++++ +++++.+|.|.-++-
T Consensus 281 -------------tW~~~~~~~~~~~~~~~v~-~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 281 -------------TWQQDVDVKKVPSNFYKIL-FFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp -------------SCEECGGGTTSSSCCCEEE-EEETTE-EEEECSTTEEEEECC
T ss_pred -------------ccEEcCccCCCCCCeEEEE-EECCCc-eEEEcCCceEEEEcC
Confidence 11111110 0112366677 444445 555566788776653
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.83 E-value=0.013 Score=50.75 Aligned_cols=255 Identities=15% Similarity=0.139 Sum_probs=125.6
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEec---CCCCceEEEEEccC---CCcEEEEeCCC-----C
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLG---KHQGRVYKLAVEPG---SPYIIYSCGED-----G 126 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~v~~i~~~~~---~~~~l~s~~~d-----g 126 (439)
.....++|.| ++.++++ ...|.|.+++ ++.......+. ........|+++|+ +..++++-... +
T Consensus 31 ~~P~~ia~~p--dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLP--DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECT--TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcC--CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3567899999 8885555 5568999888 33322112121 22356789999998 55455444332 6
Q ss_pred cEEEEEccCCCce---eeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-------------CceEEEEeCcCC
Q 013644 127 FVQHFDLRSDSAT---RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-------------DEYARVYDIRKC 190 (439)
Q Consensus 127 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~ 190 (439)
.|..|+...+... ..+........ ..|. ...++|.|++ .++++.+. .|.|.-++...
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~---~~h~--~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG- 178 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPH---GLHS--GGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEG- 178 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTT---CCCC--CCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCC---CCcC--CceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCC-
Confidence 6888887654221 11111110000 1122 3579999987 56555432 24565555542
Q ss_pred cccCCCCCCCCccc---ccccccccCCCccEEEEEEcc-CCCEEEEec-CCe--------EEEEEccCCCCCCCCCCCc-
Q 013644 191 HWYSPISSDTPVDT---FCPRHLIGKNNIHITGLAYSN-TSELLISYN-DEL--------VYLFEKNMGLGPSPLSLSP- 256 (439)
Q Consensus 191 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-d~~--------i~i~d~~~~~~~~~~~~~~- 256 (439)
+ .....+... ........+ -.....++|+| +++++++-. .+. |.+.. .+..---.....
T Consensus 179 ~----~p~~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~ 251 (352)
T 2ism_A 179 E----PAPGNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGR 251 (352)
T ss_dssp S----BCTTCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSC
T ss_pred C----CCCCCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCC
Confidence 1 011111100 000111111 23356789999 677666653 222 33332 221000000000
Q ss_pred cccc-ccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce------eEeecccccceEEEeecCCC
Q 013644 257 EDLQ-KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL------VRLMVGDRHVVNQLEPHPHI 329 (439)
Q Consensus 257 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~~s~~~ 329 (439)
.... ...+...+..+. ....+++ .+|.++++.-..+.|...+++.... ...+......+..+++.|||
T Consensus 252 ~~~~~~~~p~~~~~~~~---ap~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 326 (352)
T 2ism_A 252 GNDPRYRDPLYFWPQGF---PPGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG 326 (352)
T ss_dssp CCCTTSCCCSEECTTCC---CEEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS
T ss_pred CCCCCCcCCeEecCCCC---CCcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC
Confidence 0000 011222222222 2566774 4677777777778888887764431 12222223578899999999
Q ss_pred cEEEEEe
Q 013644 330 PMFATCG 336 (439)
Q Consensus 330 ~~l~s~~ 336 (439)
.++++..
T Consensus 327 ~lyv~~~ 333 (352)
T 2ism_A 327 ALYVTTS 333 (352)
T ss_dssp CEEEEEC
T ss_pred cEEEEEe
Confidence 8766654
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.73 E-value=0.017 Score=49.56 Aligned_cols=199 Identities=11% Similarity=0.138 Sum_probs=111.6
Q ss_pred eEEEEECCCCCEEEEec------------CCCeEEEEeCCCC--cceeeeecC-----CcccEEEEEEeecCCCc-EEEE
Q 013644 17 VNAVEFNSTGDFLVSGS------------DDKLVIFWDWKDR--REKFSYLSG-----HLDNIFQTRIMPFTDDR-KIIT 76 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~------------~dg~i~iw~~~~~--~~~~~~~~~-----h~~~v~~~~~~~~~~~~-~l~s 76 (439)
.-.+...|+|..+++++ .+|.|.++|..+. +.....+.+ ..-....+.+.+..++. +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566788886666652 6899999998743 211111122 22356777776511233 3444
Q ss_pred e-cC--CCcEEEEEcccCce--eeeEEecCC-CCceEEEEEccCCCcEEEEeC-----------------CCCcEEEEEc
Q 013644 77 S-SA--DGQVRLGQIFEDGR--MDTKRLGKH-QGRVYKLAVEPGSPYIIYSCG-----------------EDGFVQHFDL 133 (439)
Q Consensus 77 ~-~~--dg~i~iw~~~~~~~--~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~-----------------~dg~i~iwd~ 133 (439)
+ .. +.+|.+|++..... .....+.+. -...+.+++.++|. ++++.. ..|.|..++.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 3 33 56888888765432 222233322 24678999999996 444543 1234444443
Q ss_pred cCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
++....... -...+.++|+|++..++++-+..+.|..|++..... + .....+ .
T Consensus 211 --~~~~~~~~~------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~---------l---~~~~~~-~ 263 (355)
T 3sre_A 211 --NDVRVVAEG------------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT---------L---TPLRVL-S 263 (355)
T ss_dssp --TCCEEEEEE------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC---------E---EEEEEE-E
T ss_pred --CeEEEeecC------------CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc---------E---ecCEEE-e
Confidence 332222211 223689999999866666666788999999863210 0 011111 1
Q ss_pred CCccEEEEEEcc-CCCEEEEec-C-CeEEEEEc
Q 013644 214 NNIHITGLAYSN-TSELLISYN-D-ELVYLFEK 243 (439)
Q Consensus 214 ~~~~i~~~~~~~-~~~~l~~~~-d-~~i~i~d~ 243 (439)
.....-.+++.+ +|.+.+++. + +.|..|+.
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 145677889999 598888664 3 35554543
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.015 Score=48.78 Aligned_cols=225 Identities=9% Similarity=0.083 Sum_probs=124.8
Q ss_pred ecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEee---cCCCCcEEEE
Q 013644 99 LGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI---DPRNPNYFAV 175 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~ 175 (439)
+.....-..+++|++....++++.-..++|..|+...+..... .......... ....+..+.+ .|++ .++++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~---~~~~~sGl~~~~~D~~g-rL~vv 82 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGD---GEQQMSGLSLLTHDNSK-RLFAV 82 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSC---CSEEEEEEEESSSSSCC-EEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCC---CcceeeEEEEeccCCCC-cEEEE
Confidence 3334444567899886665666666899999999876544333 1111000000 1234588999 6874 67765
Q ss_pred eec-------------CceEEEEeCc---CCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C-Ce
Q 013644 176 GGS-------------DEYARVYDIR---KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-EL 237 (439)
Q Consensus 176 ~~~-------------dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d-~~ 237 (439)
... +..|..||+. +++.+...........+. ............++..++|+..++.+ . +.
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE--KKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH--HHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc--ccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 432 5779999998 655322111000000000 00000224588999999999888776 6 77
Q ss_pred EEEEEccCCCCCCCCCCCcccccccccceeEe--C--CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce--eE
Q 013644 238 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--G--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VR 311 (439)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~ 311 (439)
|..++.... ....+. . .......+.++ ++|+|+.|++....|.|..+|+.+... +.
T Consensus 161 I~rV~pdG~-----------------~~~~~~~~~~~~~~~~G~nGIv-~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~ 222 (334)
T 2p9w_A 161 IARVSADGK-----------------TVSTFAWESGNGGQRPGYSGIT-FDPHSNKLIAFGGPRALTAFDVSKPYAWPEP 222 (334)
T ss_dssp EEEECTTSC-----------------CEEEEEECCCCSSSCCSCSEEE-EETTTTEEEEESSSSSEEEEECSSSSCCCEE
T ss_pred EEEEeCCCC-----------------EEeeeeecCCCcccccCcceEE-EeCCCCEEEEEcCCCeEEEEcCCCCcceeec
Confidence 777766532 111110 0 01111266788 799998888776699999999885332 21
Q ss_pred eec-cc---ccceEEE-eecCCCcE-EEEEecCCeEEEeccCC
Q 013644 312 LMV-GD---RHVVNQL-EPHPHIPM-FATCGIEKTVKLWAPMP 348 (439)
Q Consensus 312 ~~~-~h---~~~v~~~-~~s~~~~~-l~s~~~dg~i~iw~~~~ 348 (439)
.-. +. -.....| ..-.+|+. |++....+.+.+.+.+.
T Consensus 223 ~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 223 VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 110 21 1122332 33346776 66666666666665544
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.67 E-value=0.019 Score=48.33 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCCEEEEec-CC-----CeEEEEeCCCCcceee-eecCCcccEEEEEEeecCCCcEEEEecCC-----CcEEEEEcccCc
Q 013644 25 TGDFLVSGS-DD-----KLVIFWDWKDRREKFS-YLSGHLDNIFQTRIMPFTDDRKIITSSAD-----GQVRLGQIFEDG 92 (439)
Q Consensus 25 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~ 92 (439)
++.+++.|+ .+ ..+.+||..+.+-... .+...... .+++. . ++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASVS-L--HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEEE-E--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 456777777 33 3688889877642111 01111111 12222 2 67777887754 468899988776
Q ss_pred ---eeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-----CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 93 ---RMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-----GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 93 ---~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-. ... ......++.
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p~------~r~~~~~~~ 157 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD---MQT------AREGAGLVV 157 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEE---CSS------CCBSCEEEE
T ss_pred CCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCC---CCC------CcccceEEE
Confidence 4332222222222222222 44 467777654 358889988765443321 111 011112222
Q ss_pred ecCCCCcEEEEeecC-----ceEEEEeCcCCcc
Q 013644 165 IDPRNPNYFAVGGSD-----EYARVYDIRKCHW 192 (439)
Q Consensus 165 ~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 192 (439)
+ ++ .+++.|+.+ ..+.+||+.+.+.
T Consensus 158 ~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 158 A--SG-VIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp E--TT-EEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred E--CC-EEEEECCCCCCcccceEEEEeCCCCcE
Confidence 2 23 778887754 4588999887664
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.44 E-value=0.047 Score=47.15 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=60.0
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcc--eee--eecCCcccEEEEEEeecCC---CcEEEEecC-C-----C
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRRE--KFS--YLSGHLDNIFQTRIMPFTD---DRKIITSSA-D-----G 81 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~--~~~~h~~~v~~~~~~~~~~---~~~l~s~~~-d-----g 81 (439)
.....++|.|+|+++++ ...|.|++++ ++.. +.. ...........++++| + +..|+.+.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCcc
Confidence 45679999999996665 4569999998 3321 111 1112245678999998 7 445544332 2 5
Q ss_pred cEEEEEcccCce----eeeEEec---CCCCceEEEEEccCCCcEEEEeC
Q 013644 82 QVRLGQIFEDGR----MDTKRLG---KHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 82 ~i~iw~~~~~~~----~~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
.|..++...... .....+. ........++|.|+|. ++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence 677777754311 1111122 1112346899999995 555543
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.43 E-value=0.043 Score=46.33 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=112.3
Q ss_pred CcEEEEecC--CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC----CcEEEEEccCCCceeeEEe
Q 013644 71 DRKIITSSA--DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED----GFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 71 ~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~ 144 (439)
+.+++.|+. ...+.+||..+.+......+......-..+.+ ++ .+++.|+.+ ..+.+||+.+++-...-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~- 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG- 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEEC-
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCC-
Confidence 344555554 35788899877665433222222222222222 34 377777755 568889988775433211
Q ss_pred eccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC------ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccE
Q 013644 145 SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 218 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (439)
.+. .......+.+ ++.+++.|+.+ ..+.+||..+.+....... ......-
T Consensus 88 --~p~------~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-------------p~~r~~~ 143 (306)
T 3ii7_A 88 --PPT------PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-------------LTQRCSH 143 (306)
T ss_dssp --CSS------CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-------------SSCCBSC
T ss_pred --CCc------cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-------------cCCccee
Confidence 111 0111122223 23788888765 4588999887654322110 0001111
Q ss_pred EEEEEccCCCEEEEec----------CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCc
Q 013644 219 TGLAYSNTSELLISYN----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 288 (439)
Q Consensus 219 ~~~~~~~~~~~l~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~ 288 (439)
..+. -++++++.++ -..+.+||+.+.. ...+..+..... -.+++ .-+++
T Consensus 144 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--------------W~~~~~~p~~r~---~~~~~--~~~~~ 202 (306)
T 3ii7_A 144 GMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--------------WTELCPMIEARK---NHGLV--FVKDK 202 (306)
T ss_dssp EEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTE--------------EEEECCCSSCCB---SCEEE--EETTE
T ss_pred EEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCe--------------EEECCCccchhh---cceEE--EECCE
Confidence 1122 2556666553 2347888876641 011111111111 11222 12677
Q ss_pred eEEEeCCC-----CeEEEEecCCCcee--EeecccccceEEEeecCCCcEEEEEecC-----CeEEEeccCCCC
Q 013644 289 YVMSGSDC-----GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 350 (439)
Q Consensus 289 ~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 350 (439)
+++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 77777653 46889998775432 222211122223333 66777888754 457777776654
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.37 E-value=0.059 Score=46.55 Aligned_cols=254 Identities=10% Similarity=0.047 Sum_probs=126.8
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe---cCCCCceEEEEEccC---CCcEEEEeCC---C---
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL---GKHQGRVYKLAVEPG---SPYIIYSCGE---D--- 125 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~v~~i~~~~~---~~~~l~s~~~---d--- 125 (439)
.....++|.| +++++++ ..+|.|++++. ++. .....+ .........|+++|+ +..++++-.. +
T Consensus 29 ~~P~~ia~~p--dG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLG--GGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEE--TTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcC--CCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4567899999 8885555 55699988873 333 212221 122356789999998 5445544332 3
Q ss_pred -CcEEEEEccCC--Cc--ee-eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-------------CceEEEEe
Q 013644 126 -GFVQHFDLRSD--SA--TR-LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-------------DEYARVYD 186 (439)
Q Consensus 126 -g~i~iwd~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d 186 (439)
..|..|+.... .. .. .+...... ..| ....++|.|++ .++++.+. .|.|.-++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~-----~~h--~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGA-----YIH--NGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECC-----SSC--CCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCC-----CCc--CCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 56777776654 11 11 11111100 012 23568999987 55555332 24555555
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCEEEEec--C--CeEEEEEccCCCCCCCCCCCcccccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN--D--ELVYLFEKNMGLGPSPLSLSPEDLQK 261 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (439)
... + .....+.. ...+....-.....++|+| +++++++-. + ..|.+........-....- ......
T Consensus 176 ~dG-~----~p~~npf~---~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g-~~~~~~ 246 (354)
T 3a9g_A 176 EEG-R----PPADNPFP---NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATG-KAGRGE 246 (354)
T ss_dssp TTS-C----CCTTSSST---TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCS-CCCCTT
T ss_pred CCC-C----CCCCCCCC---CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccC-CCCCCC
Confidence 432 1 01111110 0011111122356799999 677766653 2 2344433211000000000 000000
Q ss_pred -cccceeE-eCCCCcceeeeEEee------CCCCceEEEeCCCCeEEEEecCCC-cee--Eee-cccccceEEEeecCCC
Q 013644 262 -REEPQVY-SGHRNSQTVKGVNFF------GPNDEYVMSGSDCGHLFIWKKKGG-KLV--RLM-VGDRHVVNQLEPHPHI 329 (439)
Q Consensus 262 -~~~~~~~-~~~~~~~~v~~~~~~------s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~~~~s~~~ 329 (439)
......+ ..+ .....+.++ ..+|+++++.-..+.|...++... +.. ..+ .+....+..+++.|||
T Consensus 247 ~~~p~~~~~~~~---~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 247 FVDPVIDTGSET---WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp SCCCSEECTTCC---CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred CcCCEeecCCCC---cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence 0111222 112 236677732 246788887777789999888753 322 222 2223578899999999
Q ss_pred cEEEEEe
Q 013644 330 PMFATCG 336 (439)
Q Consensus 330 ~~l~s~~ 336 (439)
.+.++..
T Consensus 324 ~lyv~~~ 330 (354)
T 3a9g_A 324 GILISTS 330 (354)
T ss_dssp CEEEEEC
T ss_pred cEEEEEe
Confidence 8766654
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.36 E-value=0.06 Score=46.52 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=57.8
Q ss_pred ccceEEEEECCCCC-EEEEecCCCeEEEEeCCCCcc--eee---eecCCcccEEEEEEeecCC---CcEEEEec-C----
Q 013644 14 KGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRRE--KFS---YLSGHLDNIFQTRIMPFTD---DRKIITSS-A---- 79 (439)
Q Consensus 14 ~~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~--~~~---~~~~h~~~v~~~~~~~~~~---~~~l~s~~-~---- 79 (439)
-.....|+|.|+|+ ++++ ...|.|++++...... +.. ...........++++| + +..|+.+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAP--DFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp ESSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECT--THHHHCEEEEEEEEECSS
T ss_pred CCCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECC--CCCCCCEEEEEEeCCCCC
Confidence 34568999999999 6655 4578999998533211 111 1112234678999998 6 45554432 2
Q ss_pred ---CCcEEEEEcccCc--e--ee-e-EEec---CCCCceEEEEEccCCCcEEEEeC
Q 013644 80 ---DGQVRLGQIFEDG--R--MD-T-KRLG---KHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 80 ---dg~i~iw~~~~~~--~--~~-~-~~~~---~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
...|..|++.... . .. . ..+. ........|+|.|+|. ++++.+
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 148 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG 148 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence 2345556654321 1 10 1 1111 1112246799999995 555543
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.35 E-value=0.053 Score=45.64 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=110.9
Q ss_pred CCcEEEEecCC----CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-----CcEEEEEccCCCcee
Q 013644 70 DDRKIITSSAD----GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-----GFVQHFDLRSDSATR 140 (439)
Q Consensus 70 ~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 140 (439)
++..++.|+.+ ..+.+||+.+........+......- +++.. ++ .+++.|+.+ ..+.+||..+.+-..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CC-EEEEEeCcCCCccccceEEECCCCCceee
Confidence 34455556543 45788888776543322222111111 22222 34 477777754 358889988765332
Q ss_pred eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc-----eEEEEeCcCCcccCCCCCCCCcccccccccccCCC
Q 013644 141 LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 215 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (439)
.- .... .......+.+ ++ .+++.|+.++ .+.+||+.+.+....... ....
T Consensus 92 ~~---~~p~------~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-------------p~~r 146 (302)
T 2xn4_A 92 VA---NMRD------RRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-------------NTRR 146 (302)
T ss_dssp EC---CCSS------CCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-------------SSCC
T ss_pred CC---CCCc------cccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-------------CCcc
Confidence 21 1110 0111122223 23 7777777553 578899887654322110 0001
Q ss_pred ccEEEEEEccCCCEEEEec-C-------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCC
Q 013644 216 IHITGLAYSNTSELLISYN-D-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 287 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~-d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~ 287 (439)
.....+. -++++++.++ + ..+.+||+.+.. ......+..... -.+++ ..++
T Consensus 147 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--------------W~~~~~~p~~r~---~~~~~--~~~~ 205 (302)
T 2xn4_A 147 SSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNE--------------WTYIAEMSTRRS---GAGVG--VLNN 205 (302)
T ss_dssp BSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTE--------------EEEECCCSSCCB---SCEEE--EETT
T ss_pred cCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCc--------------EEECCCCccccc---cccEE--EECC
Confidence 1111122 2556666553 1 357888876541 011111111111 11222 1267
Q ss_pred ceEEEeCCC-----CeEEEEecCCCceeE--eecccccceEEEeecCCCcEEEEEecCC-----eEEEeccCCCCC
Q 013644 288 EYVMSGSDC-----GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDF 351 (439)
Q Consensus 288 ~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~ 351 (439)
++++.|+.+ ..+.+||+.+.+-.. .+......-..+. -++++++.|+.++ .+.+||+.+.+.
T Consensus 206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 788887754 468899988764322 2211111111222 2667777777654 478888876654
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.33 E-value=0.055 Score=45.48 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=111.1
Q ss_pred CCcEEEEec-CC-----CcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-----CcEEEEEccCCC-
Q 013644 70 DDRKIITSS-AD-----GQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-----GFVQHFDLRSDS- 137 (439)
Q Consensus 70 ~~~~l~s~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~- 137 (439)
++..++.|+ .+ ..+.+||+.+.+......+.........+. .++ .+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHD-RIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECC-EEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 32 468888887765433222222111112222 234 477777755 468899998876
Q ss_pred --ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-----ceEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 138 --ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
-... ...+. ......++.+ ++ .+++.|+.+ ..+.+||+.+.+...... .
T Consensus 91 ~~W~~~---~~~p~------~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------------~ 146 (301)
T 2vpj_A 91 GVWYSV---APMNV------RRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD------------M 146 (301)
T ss_dssp CCCEEE---CCCSS------CCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEE------------C
T ss_pred CeeEEC---CCCCC------CccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCC------------C
Confidence 3222 11111 1111122222 23 777777754 368889988765422110 0
Q ss_pred ccCCCccEEEEEEccCCCEEEEec-C-----CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC
Q 013644 211 IGKNNIHITGLAYSNTSELLISYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 284 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s 284 (439)
......-..+. -++++++.|+ + ..+.+||+.+.. ...+..+...... ...+.
T Consensus 147 -p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--------------W~~~~~~p~~r~~--~~~~~--- 204 (301)
T 2vpj_A 147 -QTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGH--------------WTNVTPMATKRSG--AGVAL--- 204 (301)
T ss_dssp -SSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTE--------------EEEECCCSSCCBS--CEEEE---
T ss_pred -CCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCc--------------EEeCCCCCccccc--ceEEE---
Confidence 00111111122 2566666653 2 468888876541 0111111111111 12222
Q ss_pred CCCceEEEeCCC-----CeEEEEecCCCceeEe--ecccccceEEEeecCCCcEEEEEecC-----CeEEEeccCCCC
Q 013644 285 PNDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 350 (439)
Q Consensus 285 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 350 (439)
.++++++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 205 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 205 LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 267777777764 4689999887643322 2211111122222 56677777765 356667766543
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.28 E-value=0.036 Score=55.87 Aligned_cols=266 Identities=11% Similarity=0.064 Sum_probs=152.8
Q ss_pred CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceee
Q 013644 80 DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIR 159 (439)
Q Consensus 80 dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (439)
..+|.|.|+..+..+..+.+ .--+...+|..+ +++.- ...++.|+|+++.+.+..... ...
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~-iiALr-ag~~lQiFnl~~k~klks~~~------------~e~ 107 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASK-VIALK-AGKTLQIFNIEMKSKMKAHTM------------TDD 107 (1630)
T ss_pred CceEEEEECCCCCCcccccc-----cchhhccCCCcc-eEEEe-cCCeEEEeehHHhhhhccccc------------CCC
Confidence 44788889877665422222 223455688876 55443 467899999998877665543 223
Q ss_pred eEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-----
Q 013644 160 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----- 234 (439)
Q Consensus 160 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----- 234 (439)
|.--.|-.. +.|+..+ +..|+-|++.... .|.+.+.....+. ...|..-..+++.++++..+
T Consensus 108 VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s--------~P~k~fdR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~ 174 (1630)
T 1xi4_A 108 VTFWKWISL--NTVALVT-DNAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQ 174 (1630)
T ss_pred ceEEEecCC--CeeEEEc-CCeEEEeccCCCC--------ccHHHHhcchhcc--cCeeEEeeeCCCCCeEEEEeeccCC
Confidence 555555543 3444444 3479999996522 2333332222222 56788888899998876431
Q ss_pred ---CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEe--eCCCCceEEEeCC---CCeEEEEecCC
Q 013644 235 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF--FGPNDEYVMSGSD---CGHLFIWKKKG 306 (439)
Q Consensus 235 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~s~~~~~l~~~~~---dg~i~iwd~~~ 306 (439)
.|.+.+|..... ..+.+.||... ...+.. ..+....++.+.. .+.++|-++..
T Consensus 175 ~~v~G~mQLyS~er~-----------------~sQ~iegha~~--F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 175 NRVVGAMQLYSVDRK-----------------VSQPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred Ccccceeeeeecccc-----------------cchhhhHhHhh--hheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 468888887754 34455555543 111110 0111122222211 26888888743
Q ss_pred C---ce------eEeecc---cccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceE
Q 013644 307 G---KL------VRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR 374 (439)
Q Consensus 307 ~---~~------~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (439)
. .. +..+-. -..-..++..++.-..+...+.-|.|.++|+.++.......-....+..........-+
T Consensus 236 ~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~ 315 (1630)
T 1xi4_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 315 (1630)
T ss_pred CccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCce
Confidence 2 11 111111 12334567778877788888889999999999987643332222222222233344567
Q ss_pred EEeCCCcEEEEEEecccceeee
Q 013644 375 ITLTPDVIMHVLRLQRRQTLAY 396 (439)
Q Consensus 375 ~~~s~dg~v~~w~~~~~~~~~~ 396 (439)
+.....|.|.-..+.......+
T Consensus 316 ~~vnr~G~vl~v~v~~~~iv~y 337 (1630)
T 1xi4_A 316 IGVNRKGQVLSVCVEEENIIPY 337 (1630)
T ss_pred EEEcCCceEEEEEEccchhhhh
Confidence 7777888888888777766653
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.27 E-value=0.066 Score=45.13 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=77.0
Q ss_pred CCEEEEecC--CCeEEEEeCCCCcceee-eecCCcccEEEEEEeecCCCcEEEEecCC----CcEEEEEcccCceeeeEE
Q 013644 26 GDFLVSGSD--DKLVIFWDWKDRREKFS-YLSGHLDNIFQTRIMPFTDDRKIITSSAD----GQVRLGQIFEDGRMDTKR 98 (439)
Q Consensus 26 ~~~l~t~~~--dg~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~ 98 (439)
+.+++.|+. ...+.+||..+.+-... .+...... .+++. - ++..++.|+.+ ..+.+||+.+.+......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVF-W--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEE-E--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEE-E--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 345566664 35788899877642111 01111111 12222 2 67777888754 578889988776543333
Q ss_pred ecCCCCceEEEEEccCCCcEEEEeCCC------CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcE
Q 013644 99 LGKHQGRVYKLAVEPGSPYIIYSCGED------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNY 172 (439)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 172 (439)
+.........+.+ ++ .+++.|+.+ ..+.+||..+.+-...- ..+. ......++.+ ++ .+
T Consensus 88 ~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~------~r~~~~~~~~--~~-~i 152 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLT------QRCSHGMVEA--NG-LI 152 (306)
T ss_dssp CSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSS------CCBSCEEEEE--TT-EE
T ss_pred CCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcC------CcceeEEEEE--CC-EE
Confidence 3322222222222 44 377777765 45889998877543321 1110 0111122222 23 67
Q ss_pred EEEeec---------CceEEEEeCcCCcc
Q 013644 173 FAVGGS---------DEYARVYDIRKCHW 192 (439)
Q Consensus 173 l~~~~~---------dg~i~i~d~~~~~~ 192 (439)
++.|+. -..+.+||+.+.+.
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 777764 34588999887654
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.25 E-value=0.1 Score=46.80 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=61.1
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecC------CCCceEEEEEccC---CCcEEEEeCC----
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGK------HQGRVYKLAVEPG---SPYIIYSCGE---- 124 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~v~~i~~~~~---~~~~l~s~~~---- 124 (439)
...+.|+|.| +++++++-...+.|++++..++.......+.. .......|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999 99877775544578888765444332222321 2456779999996 5545444432
Q ss_pred --------CCcEEEEEccCCC--c--eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee
Q 013644 125 --------DGFVQHFDLRSDS--A--TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177 (439)
Q Consensus 125 --------dg~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 177 (439)
...|.-+++.... . ...+.. ..... .......|+|.|++ .++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~-~~p~~-----~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLA-GLPSS-----KDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEE-EECCC-----SSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEE-cCCCC-----CCCCCCeEeECCCC-eEEEEEC
Confidence 2356666654321 1 111111 11110 11236889999998 5555433
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.24 E-value=0.071 Score=53.83 Aligned_cols=274 Identities=10% Similarity=0.087 Sum_probs=149.7
Q ss_pred CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEcc
Q 013644 34 DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113 (439)
Q Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~ 113 (439)
...+|.|-|+.++..+.+.... .-+.-.+| ..+.||.-. ..++.|+|+++...+....+ ..+|.-=.|-.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~----AdsAIMnP--~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCccccccc----chhhccCC--CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecC
Confidence 3447888998887655332111 22334566 666665543 67999999988776644433 35666667766
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCC-ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEee------cCceEEEEe
Q 013644 114 GSPYIIYSCGEDGFVQHFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYD 186 (439)
Q Consensus 114 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d 186 (439)
... |+-.+ +..|+.|++.... +.+.+..+... ....|..-..+++....+++|- -.|.+.+|.
T Consensus 116 ~~~--l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L-------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 116 LNT--VALVT-DNAVYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred CCe--eEEEc-CCeEEEeccCCCCccHHHHhcchhc-------ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeee
Confidence 553 33332 4579999997532 22222221111 2345777777887744444443 347888888
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc---CCCEEEEec----CCeEEEEEccCCCCCCCCCCCcccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDL 259 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~ 259 (439)
...+. .+.+.+|......+.... ...+++.+. .+.+.+.++....... ..+..
T Consensus 186 ~er~~----------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~-~~f~k--- 245 (1630)
T 1xi4_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPK--- 245 (1630)
T ss_pred ccccc----------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC-CCCcc---
Confidence 87643 222244444443333321 123333332 3789999986541110 00000
Q ss_pred cccccce-eEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecC
Q 013644 260 QKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 338 (439)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 338 (439)
+... .+..........++. .++.-..+..-+.-|.|.+||+.++.++..-+-...+|...+-++...-++.....
T Consensus 246 ---k~~~~~~~~~~~~Dfpv~~~-vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~ 321 (1630)
T 1xi4_A 246 ---KAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 321 (1630)
T ss_pred ---ccccccCCcccccCcceEEE-eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCC
Confidence 0001 111111112244555 67777888888889999999999998875544344555555544433334444467
Q ss_pred CeEEEeccCCCCC
Q 013644 339 KTVKLWAPMPTDF 351 (439)
Q Consensus 339 g~i~iw~~~~~~~ 351 (439)
|.|.--.+....+
T Consensus 322 G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 322 GQVLSVCVEEENI 334 (1630)
T ss_pred ceEEEEEEccchh
Confidence 7666666554443
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.19 E-value=0.05 Score=47.25 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=92.4
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCcceeeeecCC----cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce------
Q 013644 24 STGDFLVSGSDDKLVIFWDWKDRREKFSYLSGH----LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR------ 93 (439)
Q Consensus 24 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------ 93 (439)
.+|..++.+- ++.||.-++..... .+.+... -..|..+..+| +|++||..+. .+|.|-.+..+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~-Yk~L~~~~~i~f~~i~qlvlSp--sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSL-YHSLNFSRHLVLDDTFHVISST--SGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSS-CEEEECTTTCCCCTTCEEEECT--TSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCc-ceEEecCcccccCceeEEEECC--CCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3555555543 36788778764432 2222221 23577899999 9999998755 5888888863221
Q ss_pred ----ee--eEEecC----CCCceEEEEEccCCCc--EEEEeCCCCcEEEEEccCCCceee-EEeeccCCCCCCCCceeee
Q 013644 94 ----MD--TKRLGK----HQGRVYKLAVEPGSPY--IIYSCGEDGFVQHFDLRSDSATRL-FYCSSFSENSKQPMNSIRL 160 (439)
Q Consensus 94 ----~~--~~~~~~----~~~~v~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 160 (439)
.. ...+.. ...+|..+.|+|-+.. .|++-..|+.|++||+........ +.. .............|
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k--~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNK--PNNSFGLDARVNDI 182 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESC--CCSEEESCSSCCCE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhc--cccccCCCcccceE
Confidence 11 122221 2467999999996543 677888999999999987432222 110 00000001122568
Q ss_pred EEEeecCCCCcEEEEe--ecCceEEEEe
Q 013644 161 NAIVIDPRNPNYFAVG--GSDEYARVYD 186 (439)
Q Consensus 161 ~~~~~~~~~~~~l~~~--~~dg~i~i~d 186 (439)
.+++|.+++ -.|... +..|.|+-.-
T Consensus 183 ~S~~Fg~~~-lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 183 TDLEFSKDG-LTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECTTS-SCEEEEECTTSCEEEEES
T ss_pred EEEEEcCCC-cEEEEEecCCCCCEEEEC
Confidence 899999854 555554 4777776543
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.17 E-value=0.085 Score=44.35 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCCEEEEecCC----CeEEEEeCCCCcceee-eecCCcccEEEEEEeecCCCcEEEEecCC-----CcEEEEEcccCcee
Q 013644 25 TGDFLVSGSDD----KLVIFWDWKDRREKFS-YLSGHLDNIFQTRIMPFTDDRKIITSSAD-----GQVRLGQIFEDGRM 94 (439)
Q Consensus 25 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~ 94 (439)
++.+++.|+.+ ..+..||..+..-... .+...... .+++.. ++..++.|+.+ ..+.+||..+.+..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEEE---CCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 34566666643 3578888877642111 01111111 122222 67777887754 35888898776654
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCCC-----cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCC
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG-----FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN 169 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (439)
....+.........+.+ ++ .+++.|+.++ .+.+||+.+.+-...- .... ......++.+ +
T Consensus 91 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~------~r~~~~~~~~---~ 155 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---PMNT------RRSSVGVGVV---G 155 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEEC---CCSS------CCBSCEEEEE---T
T ss_pred eCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecC---CCCC------cccCceEEEE---C
Confidence 33222222222222222 34 3666776553 4778888776533321 1110 0111122222 2
Q ss_pred CcEEEEeecC-------ceEEEEeCcCCcc
Q 013644 170 PNYFAVGGSD-------EYARVYDIRKCHW 192 (439)
Q Consensus 170 ~~~l~~~~~d-------g~i~i~d~~~~~~ 192 (439)
+.+++.|+.+ ..+.+||+.+.+.
T Consensus 156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 156 GLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 3677777653 3588999887654
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.16 E-value=0.1 Score=45.09 Aligned_cols=104 Identities=8% Similarity=0.073 Sum_probs=59.5
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeee---ecCCcccEEEEEEeecCC---CcEEEEecC----C----
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTD---DRKIITSSA----D---- 80 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~---~~~l~s~~~----d---- 80 (439)
.....|+|.|+|+++++ ..+|.|++++. ++...... ..........++++| + +..|+.+.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCcc
Confidence 45689999999986665 45599999973 33311111 112235688999998 6 445544332 2
Q ss_pred CcEEEEEcccCc------eeeeEEec-CCCCceEEEEEccCCCcEEEEeC
Q 013644 81 GQVRLGQIFEDG------RMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 81 g~i~iw~~~~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
..|..|+..... ......+. ........++|.|+|. ++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence 567777765431 11111122 1112346799999996 555543
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.12 E-value=0.099 Score=44.27 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=72.9
Q ss_pred EEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecC-----C------CcEEEEEcccCceeee
Q 013644 28 FLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSA-----D------GQVRLGQIFEDGRMDT 96 (439)
Q Consensus 28 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----d------g~i~iw~~~~~~~~~~ 96 (439)
+++.|+ ..+.+||..+.+-...-+.............. ++..++.|+. . ..+.+||..+.+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 455566 56899998887533222211111222222223 6777777773 1 1267788876654322
Q ss_pred EEecCCCCceEEEEEccCCCcEEEEeCCC--------CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCC
Q 013644 97 KRLGKHQGRVYKLAVEPGSPYIIYSCGED--------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR 168 (439)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (439)
..+....... +++.. ++ .+++.|+.+ ..+.+||..+.+-...- ..+. ......++.+
T Consensus 83 ~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~------~r~~~~~~~~--- 147 (315)
T 4asc_A 83 PPLPSPRCLF-GLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPY------VVYGHTVLSH--- 147 (315)
T ss_dssp CCBSSCEESC-EEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSS------CCBSCEEEEE---
T ss_pred CCCCcchhce-eEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCC------cccceeEEEE---
Confidence 2222111111 12222 33 467777742 45888998876532221 1110 1111122222
Q ss_pred CCcEEEEeec-C-----ceEEEEeCcCCccc
Q 013644 169 NPNYFAVGGS-D-----EYARVYDIRKCHWY 193 (439)
Q Consensus 169 ~~~~l~~~~~-d-----g~i~i~d~~~~~~~ 193 (439)
++.+++.|+. + ..+.+||+.+.+..
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 178 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK 178 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEE
Confidence 2367788876 2 46899998876543
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.11 E-value=0.11 Score=44.47 Aligned_cols=258 Identities=12% Similarity=0.117 Sum_probs=130.8
Q ss_pred cccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe----cCCCCceEEEEEccC---CCcEEEE--eCCCCc
Q 013644 57 LDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL----GKHQGRVYKLAVEPG---SPYIIYS--CGEDGF 127 (439)
Q Consensus 57 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~v~~i~~~~~---~~~~l~s--~~~dg~ 127 (439)
-...+.|+|.| ++.++++--..|.|++++...+.......+ .........|+++|+ +..+.++ ...++.
T Consensus 31 L~~P~~ia~~p--dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLP--GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcC--CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34568999999 998777766589999887654443222222 123456789999995 3334332 234556
Q ss_pred EEEEEccCCC--------ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeec-------------CceEEEEe
Q 013644 128 VQHFDLRSDS--------ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-------------DEYARVYD 186 (439)
Q Consensus 128 i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d 186 (439)
|.-|.+..+. ....+...... ..| .-..++|.|++ .++++.+. .|.|.-++
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~-----~~H--~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKG-----VIH--NGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCC-----SSC--CCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCC-----CCc--cCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 6666665421 11122211111 112 24569999987 56655432 23444444
Q ss_pred CcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCCCCCc--cccccc
Q 013644 187 IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSP--EDLQKR 262 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~--~~~~~~ 262 (439)
.... .....+... ......++ .....++|+|+|.++++-. ++.-.|--+..+..---..... ......
T Consensus 181 ~dG~-----ip~~nPf~~--~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 181 PDGE-----PAPGNPFPG--SPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp TTSS-----BCTTCSSTT--CCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred CCCC-----ccCCCCCCC--CeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 3321 111111110 01111232 3456889999988877653 3322222222221100000000 000011
Q ss_pred ccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce----eEeecccccceEEEeecCCCcEEEEEe
Q 013644 263 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMFATCG 336 (439)
Q Consensus 263 ~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~ 336 (439)
.+...+..+.. ....++|+ +|..++..-..+.|....+..... ...+.+....+..|+..|||.++++.+
T Consensus 253 ~P~~~~~~~~~--ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 253 DPVAQWSTDEA--SPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCSEEECTTTC--CEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcEecCCCCC--CCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 12223322211 25677743 466676666667777777664432 233444446789999999998766554
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.08 E-value=0.037 Score=43.30 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=64.0
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 183 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 183 (439)
..+..++|+|++. +. +. .+|.++-.+..+......+......... ......++.|.|++ .+.++ .||.|+
T Consensus 41 ~~~~~laf~P~G~-LY-aV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~----Gw~~F~a~~fD~~G-~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LY-GV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG----GWNQFQFLFFDPNG-YLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTSC-EE-EE-ETTEEEEESCCCSTTCCHHHHCEEEECS----CGGGCSEEEECTTS-CEEEE--ETTEEE
T ss_pred ccceeEEECCCcc-EE-EE-eCCeEEEECCCCCCcccccccccEeccc----ccccceEEEECCCC-CEEEe--CCCEEE
Confidence 4677999999886 44 44 7777666555442221111100000000 01113788999987 55555 669888
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEE
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL 240 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i 240 (439)
-++..+..... . ......+-...-..+..|.+.|+|.+.++. ++.++-
T Consensus 111 r~~pP~~~~~~-------W-l~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 111 KASPPQSDTDN-------W-IARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp EESCCCSTTCC-------H-HHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred EeCCCcCCCCc-------e-eccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 77754322000 0 000000111122468999999999999998 888554
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.08 E-value=0.24 Score=47.91 Aligned_cols=272 Identities=12% Similarity=0.137 Sum_probs=142.7
Q ss_pred ccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce
Q 013644 14 KGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR 93 (439)
Q Consensus 14 ~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 93 (439)
...|++|.-..+|. |-.|..+| +..||-...+............|.++.... + ..|..|+.+| +..||..+...
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~--~-g~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIID--N-TYLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEET--T-TEEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcC--C-CcEEEEeCCC-eEEEeCCCCEE
Confidence 46799999988885 44455666 556663221111000011234688877664 4 4566666555 78889866432
Q ss_pred eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEE
Q 013644 94 MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYF 173 (439)
Q Consensus 94 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 173 (439)
.. ........|.++.. .++. +. .++.+ -|..+|..+++........... ....|.++....++ . |
T Consensus 95 ~~--~~~~~~~~i~~i~~-~~g~-lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l-------~~~~i~~i~~d~~g-~-l 159 (758)
T 3ott_A 95 EQ--PETDFPTDVRTMAL-QGDT-LW-LGALN-GLYTYQLQSRKLTSFDTRRNGL-------PNNTIYSIIRTKDN-Q-I 159 (758)
T ss_dssp CC--CSCCCCSCEEEEEE-ETTE-EE-EEETT-EEEEEETTTCCEEEECHHHHCC-------SCSCEEEEEECTTC-C-E
T ss_pred EC--cccCCCceEEEEEe-cCCc-EE-EEcCC-cceeEeCCCCeEEEeccCCCCc-------CCCeEEEEEEcCCC-C-E
Confidence 21 11112335777654 4553 44 44444 5888888765533220000000 12357888887765 3 4
Q ss_pred EEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCC
Q 013644 174 AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS 253 (439)
Q Consensus 174 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 253 (439)
..|+.. -|..|+..+.+.... ............|.++...+++..|..+.++.+..++..++
T Consensus 160 Wigt~~-Gl~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~------- 221 (758)
T 3ott_A 160 YVGTYN-GLCRYIPSNGKFEGI----------PLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTG------- 221 (758)
T ss_dssp EEEETT-EEEEEETTTTEEEEE----------CCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTT-------
T ss_pred EEEeCC-CHhhCccCCCceEEe----------cCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCC-------
Confidence 445554 477788765432110 00000011133478888887766444444557888887654
Q ss_pred CCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeec-------ccccceEEEeec
Q 013644 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-------GDRHVVNQLEPH 326 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~s 326 (439)
....+... ....|.++. ...+|.+.+. +. +-+.+++..+++...... -....|.++...
T Consensus 222 ----------~~~~~~~l-~~~~i~~i~-~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D 287 (758)
T 3ott_A 222 ----------QIKQTEAF-HNNSIKSLA-LDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFAD 287 (758)
T ss_dssp ----------EEEEEEEE-EEEEEEEEE-ECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEEC
T ss_pred ----------eEEeccCC-CCCeEEEEE-EcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEc
Confidence 11111111 112477777 5666665544 34 457888877654332211 112468888888
Q ss_pred CCCcEEEEEecCC
Q 013644 327 PHIPMFATCGIEK 339 (439)
Q Consensus 327 ~~~~~l~s~~~dg 339 (439)
.+|.+-+ |+..|
T Consensus 288 ~~g~lWi-GT~~G 299 (758)
T 3ott_A 288 QEHNIWL-GTDYG 299 (758)
T ss_dssp TTCCEEE-EESSS
T ss_pred CCCCEEE-EeCCc
Confidence 7777544 33445
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.00 E-value=0.13 Score=43.45 Aligned_cols=189 Identities=11% Similarity=0.043 Sum_probs=94.5
Q ss_pred CCCCEEEEecCC----CeEEEEeCCCCcceee-eecCCcccEEEEEEeecCCCcEEEEecC----C-----CcEEEEEcc
Q 013644 24 STGDFLVSGSDD----KLVIFWDWKDRREKFS-YLSGHLDNIFQTRIMPFTDDRKIITSSA----D-----GQVRLGQIF 89 (439)
Q Consensus 24 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~----d-----g~i~iw~~~ 89 (439)
-++.+++.|+.+ ..+.+||..+.+-... .+...... .+++.. ++.+++.|+. + ..+.+||+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 356777777732 3688899876542111 01111111 122222 6777777775 2 467888887
Q ss_pred cCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCC-----CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 90 EDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-----GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+.+......+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...-. .+. ......++.
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~------~r~~~~~~~ 166 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLT------RRIGVGVAV 166 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCC---CSS------CCBSCEEEE
T ss_pred CCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCc------cccceEEEE
Confidence 7654332222222222222222 44 367777644 358888888765332211 110 111112222
Q ss_pred ecCCCCcEEEEeecC-----ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec-C---
Q 013644 165 IDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D--- 235 (439)
Q Consensus 165 ~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-d--- 235 (439)
+ ++ .+++.|+.+ ..+.+||+.+.+....... ......-..+.+ ++++++.++ +
T Consensus 167 ~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-------------p~~r~~~~~~~~--~~~iyv~GG~~~~~ 228 (308)
T 1zgk_A 167 L--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-------------NTIRSGAGVCVL--HNCIYAAGGYDGQD 228 (308)
T ss_dssp E--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-------------SSCCBSCEEEEE--TTEEEEECCBCSSS
T ss_pred E--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC-------------CCccccceEEEE--CCEEEEEeCCCCCC
Confidence 3 23 778887754 4588999887664322110 001111122222 566666654 3
Q ss_pred --CeEEEEEccCC
Q 013644 236 --ELVYLFEKNMG 246 (439)
Q Consensus 236 --~~i~i~d~~~~ 246 (439)
..+.+||+.+.
T Consensus 229 ~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 229 QLNSVERYDVETE 241 (308)
T ss_dssp BCCCEEEEETTTT
T ss_pred ccceEEEEeCCCC
Confidence 46888988764
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.98 E-value=0.063 Score=41.99 Aligned_cols=155 Identities=8% Similarity=-0.022 Sum_probs=83.0
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeE
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 238 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i 238 (439)
.+..++|+|++ .+.++ .+|.++-.+..+.....-. . ....+-...-.....+.|.|+|.+.++ +|+.|
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~-------~-s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWM-------G-RAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKL 109 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHH-------H-HCEEEECSCGGGCSEEEECTTSCEEEE-ETTEE
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCccccc-------c-cccEecccccccceEEEECCCCCEEEe-CCCEE
Confidence 46689999966 66665 7787777665442210000 0 000000000111378899999999888 78999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCc------eeEe
Q 013644 239 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK------LVRL 312 (439)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~ 312 (439)
+-++..+.... ...-....-+......+..+. +.|+|.+.+.. |+.++-....++. ....
T Consensus 110 yr~~pP~~~~~-----------~Wl~~a~~vg~~gw~~~~~lf-f~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~ 175 (236)
T 1tl2_A 110 YKASPPQSDTD-----------NWIARATEVGSGGWSGFKFLF-FHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATK 175 (236)
T ss_dssp EEESCCCSTTC-----------CHHHHSEEEECSSGGGEEEEE-ECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEE
T ss_pred EEeCCCcCCCC-----------ceeccccEeccCCCCceEEEE-ECCCceEEEEe--CCcEEecCCCCCCCcccccccce
Confidence 88875322100 000011222222333467777 89999988877 6776544333221 1111
Q ss_pred ec-ccccceEEEeecCCCcEEEEEecCCeE
Q 013644 313 MV-GDRHVVNQLEPHPHIPMFATCGIEKTV 341 (439)
Q Consensus 313 ~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i 341 (439)
+. ..-..-.-+.|.+++.+.+.. +|.+
T Consensus 176 ~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 176 IGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred eccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 11 222344557799998877666 6643
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.91 E-value=0.15 Score=42.92 Aligned_cols=230 Identities=11% Similarity=0.065 Sum_probs=110.2
Q ss_pred CCcEEEEecC----CCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC----C-----CcEEEEEccCC
Q 013644 70 DDRKIITSSA----DGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE----D-----GFVQHFDLRSD 136 (439)
Q Consensus 70 ~~~~l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~ 136 (439)
++..++.|+. -..+.+||..+.+......+......- +++.. ++ .+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 5566666663 246788888766544322222111111 22222 34 46777775 2 45888888876
Q ss_pred CceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-----ceEEEEeCcCCcccCCCCCCCCcccccccccc
Q 013644 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLI 211 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (439)
+-...- .... .......+.+ ++ .+++.|+.+ ..+.+||+.+.+.......
T Consensus 101 ~W~~~~---~~p~------~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------------- 155 (308)
T 1zgk_A 101 QWSPCA---PMSV------PRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM------------- 155 (308)
T ss_dssp EEEECC---CCSS------CCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCC-------------
T ss_pred eEeECC---CCCc------CccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCC-------------
Confidence 533221 1110 0111222223 23 777777754 3588899887654322111
Q ss_pred cCCCccEEEEEEccCCCEEEEec-C-----CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCC
Q 013644 212 GKNNIHITGLAYSNTSELLISYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 285 (439)
Q Consensus 212 ~~~~~~i~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~ 285 (439)
......-..+.+ ++++++.++ + ..+.+||+.+.. ...+..+...... ...+. +
T Consensus 156 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--------------W~~~~~~p~~r~~--~~~~~-~-- 214 (308)
T 1zgk_A 156 LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--------------WRMITAMNTIRSG--AGVCV-L-- 214 (308)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--------------EEECCCCSSCCBS--CEEEE-E--
T ss_pred CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--------------EeeCCCCCCcccc--ceEEE-E--
Confidence 000111112222 566666653 2 458888876541 0111111111111 12222 2
Q ss_pred CCceEEEeCCC-----CeEEEEecCCCceeE--eecccccceEEEeecCCCcEEEEEecC-----CeEEEeccCCCC
Q 013644 286 NDEYVMSGSDC-----GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 350 (439)
Q Consensus 286 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 350 (439)
++++++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 67777777654 568999988764322 22111111122222 56777777754 346677766543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.78 E-value=0.2 Score=42.37 Aligned_cols=227 Identities=9% Similarity=0.054 Sum_probs=108.5
Q ss_pred EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC----C-------CcEEEEEccCCCceee
Q 013644 73 KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE----D-------GFVQHFDLRSDSATRL 141 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~ 141 (439)
+++.|+ ..+.+||..+.+... ..+..........+...++. +++.|+. + ..+..||..+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 444555 578899998776543 23322222223333334554 6667763 1 1267788877653221
Q ss_pred EEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC--------ceEEEEeCcCCcccCCCCCCCCcccccccccccC
Q 013644 142 FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK 213 (439)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
- ..+. .......+.+ ++.+++.|+.+ ..+.+||..+.+....... ..
T Consensus 83 ~---~~p~------~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-------------p~ 137 (315)
T 4asc_A 83 P---PLPS------PRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-------------PY 137 (315)
T ss_dssp C---CBSS------CEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-------------SS
T ss_pred C---CCCc------chhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-------------CC
Confidence 1 1110 1111222223 23777777743 3588999887654322110 00
Q ss_pred CCccEEEEEEccCCCEEEEecC-------CeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCC
Q 013644 214 NNIHITGLAYSNTSELLISYND-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 286 (439)
Q Consensus 214 ~~~~i~~~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~ 286 (439)
....-. ++. -++++++.|+. ..+.+||+.+.. ......+...... ...+. -+
T Consensus 138 ~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--------------W~~~~~~p~~r~~--~~~~~---~~ 196 (315)
T 4asc_A 138 VVYGHT-VLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--------------WKELAPMQTARSL--FGATV---HD 196 (315)
T ss_dssp CCBSCE-EEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE--------------EEECCCCSSCCBS--CEEEE---ET
T ss_pred ccccee-EEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe--------------EEECCCCCCchhc--eEEEE---EC
Confidence 011111 111 35566655532 368888876541 0111111111111 11222 26
Q ss_pred CceEEEeCCCC-----eEEEEecCCCceeE--eecccccceEEEeecCCCcEEEEEecCC--------------eEEEec
Q 013644 287 DEYVMSGSDCG-----HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK--------------TVKLWA 345 (439)
Q Consensus 287 ~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iw~ 345 (439)
+++++.|+.++ .+.+||+.+.+-.. .+.........+.+ ++++++.|+.++ .+.+||
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd 274 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYN 274 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEec
Confidence 67777776543 58889987764322 22211111222222 567777777642 366777
Q ss_pred cCCCCC
Q 013644 346 PMPTDF 351 (439)
Q Consensus 346 ~~~~~~ 351 (439)
+.+.+.
T Consensus 275 ~~~~~W 280 (315)
T 4asc_A 275 EEEKKW 280 (315)
T ss_dssp TTTTEE
T ss_pred CCCChh
Confidence 766543
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.75 E-value=0.06 Score=46.79 Aligned_cols=109 Identities=9% Similarity=0.075 Sum_probs=75.3
Q ss_pred EEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCC--CcceeeeEEeeCCCCceEEEeCCCCeE
Q 013644 222 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHL 299 (439)
Q Consensus 222 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~s~~~~~l~~~~~dg~i 299 (439)
....+|.-++.+.++.|+.-++... ...+.+.... ....+..+. .+|+|++||..+. ..|
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~----------------~~Yk~L~~~~~i~f~~i~qlv-lSpsG~lLAl~g~-~~V 88 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTD----------------SLYHSLNFSRHLVLDDTFHVI-SSTSGDLLCLFND-NEI 88 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTC----------------SSCEEEECTTTCCCCTTCEEE-ECTTSSEEEEECS-SEE
T ss_pred EEEcCCCEEEEEECCEEEEEECCCC----------------CcceEEecCcccccCceeEEE-ECCCCCEEEEecC-CeE
Confidence 4456777778888888998887643 2233444331 222366677 8999999998875 588
Q ss_pred EEEecCCCce------------eEeecc------cccceEEEeecCCC---cEEEEEecCCeEEEeccCC
Q 013644 300 FIWKKKGGKL------------VRLMVG------DRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 300 ~iwd~~~~~~------------~~~~~~------h~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~ 348 (439)
.|..+..+.. .+.+.- ...+|..+.|||-+ ..|++-..|+.|++||+..
T Consensus 89 ~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 89 FVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 8888773310 112221 24679999999965 4788999999999999975
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.66 E-value=0.26 Score=42.10 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=64.9
Q ss_pred eeeccccceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-ee----eecCCcccEEEEEEeecCC---CcEE-EEe--
Q 013644 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FS----YLSGHLDNIFQTRIMPFTD---DRKI-ITS-- 77 (439)
Q Consensus 9 ~l~~h~~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~----~~~~h~~~v~~~~~~~~~~---~~~l-~s~-- 77 (439)
.+-..-.....|+|.|+|+++++--..|.|++++..++... .. ...........|+++| + +..| ++-
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~ 103 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTS 103 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEEC
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEec
Confidence 33334456789999999998887765899999986554321 11 1123356788999998 5 3344 332
Q ss_pred cCCCcEEEEEcccCc---------eeeeEEec-CCCCceEEEEEccCCCcEEEEeC
Q 013644 78 SADGQVRLGQIFEDG---------RMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 78 ~~dg~i~iw~~~~~~---------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
..++.|.-|.+.... ......+. .....-..|+|.|+|. ++++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 234455556554311 11111122 1122346799999996 555644
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.66 E-value=0.25 Score=41.85 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=71.2
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecC-CcccEEEEEEeecCCCcEEEEecC----CC-------cEEEEEcccCcee
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSG-HLDNIFQTRIMPFTDDRKIITSSA----DG-------QVRLGQIFEDGRM 94 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~----dg-------~i~iw~~~~~~~~ 94 (439)
.+++.|+. .+..||..+.+-....+.. ....-.+++ .. ++..++.|+. ++ .+.+||..+.+..
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 34555553 4889998877533221111 111222333 23 6777778773 12 1677887766543
Q ss_pred eeEEecCCCCceEEEEEccCCCcEEEEeCCC-------CcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC
Q 013644 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGED-------GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP 167 (439)
Q Consensus 95 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (439)
....+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...- ..+. ......++..
T Consensus 92 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~------~r~~~~~~~~-- 157 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPI------KVYGHNVISH-- 157 (318)
T ss_dssp ECSCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSS------CEESCEEEEE--
T ss_pred ECCCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCC------cccccEEEEE--
Confidence 32222221111122222 34 466677653 24778888776533221 1110 1111122222
Q ss_pred CCCcEEEEeecC------ceEEEEeCcCCcc
Q 013644 168 RNPNYFAVGGSD------EYARVYDIRKCHW 192 (439)
Q Consensus 168 ~~~~~l~~~~~d------g~i~i~d~~~~~~ 192 (439)
++.+++.|+.+ ..+.+||+.+.+.
T Consensus 158 -~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 158 -NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp -TTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred -CCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 23677777642 3589999987654
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.37 E-value=0.46 Score=41.55 Aligned_cols=202 Identities=7% Similarity=0.085 Sum_probs=114.8
Q ss_pred EEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEe
Q 013644 20 VEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRL 99 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 99 (439)
.-.+|..+.||.=. ..++.|+|+++...+.... ....|.-=.|. +.+.|+..+. ..|.-|++.... .+.+.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWi---s~~~l~lVT~-taVyHWsi~~~s-~P~kvF 142 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI---SLNTVALVTD-NAVYHWSMEGES-QPVKMF 142 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEE---ETTEEEEECS-SEEEEEESSSSC-CCEEEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEec---CCCeEEEEcC-CeeEEecccCCC-Cchhhe
Confidence 44577777777654 5799999999987766542 23456555666 4556665543 589999996532 233334
Q ss_pred cCC----CCceEEEEEccCCCcEEEEeC------CCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecC--
Q 013644 100 GKH----QGRVYKLAVEPGSPYIIYSCG------EDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-- 167 (439)
Q Consensus 100 ~~~----~~~v~~i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (439)
..| ...|.....+++.+.++++|- -.|.+.+|..+.+.. +.+.. |......+.+..
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG-----------haa~F~~~~~~g~~ 210 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG-----------HAASFAQFKMEGNA 210 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECC-----------SEEEEEEEECTTCS
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhee-----------eeeeeEEEecCCCC
Confidence 433 357888888999987666553 246788888776542 22221 233332222221
Q ss_pred CCCcEEEEeec---CceEEEEeCcCCcccCCCCCCCCccc--ccccccccCCCccEEEEEEccCCCEEEEe-cCCeEEEE
Q 013644 168 RNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDT--FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF 241 (439)
Q Consensus 168 ~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~i~ 241 (439)
....+|..+.. .+.+++.++.....- ..+... ............-..++..++...++..- .-|.+++|
T Consensus 211 ~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~-----~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ly 285 (494)
T 1bpo_A 211 EESTLFCFAVRGQAGGKLHIIEVGTPPTG-----NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (494)
T ss_dssp SEEEEEEEEECSTTCCEEEEEECSCCCTT-----CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CCceEEEEEEecCCCcEEEEEEcCCCccC-----CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEE
Confidence 11123333332 268999988543100 011110 00001112234455677788776555554 59999999
Q ss_pred EccCC
Q 013644 242 EKNMG 246 (439)
Q Consensus 242 d~~~~ 246 (439)
|+.++
T Consensus 286 DleTg 290 (494)
T 1bpo_A 286 DLETG 290 (494)
T ss_dssp ETTTC
T ss_pred ecccc
Confidence 99987
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.05 E-value=0.73 Score=43.92 Aligned_cols=158 Identities=11% Similarity=0.119 Sum_probs=80.7
Q ss_pred CCCCEEEEecCC----CeEEEEeCCCCcceeee-------ecCCcccEEEEEEeecCCCcEEEEecCC------CcEEEE
Q 013644 24 STGDFLVSGSDD----KLVIFWDWKDRREKFSY-------LSGHLDNIFQTRIMPFTDDRKIITSSAD------GQVRLG 86 (439)
Q Consensus 24 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iw 86 (439)
.++.+++.||.+ ..+.+||..+..-.... .......-..+.+.. ++..++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 456777777753 46788888766422111 011111122233321 45666777643 357788
Q ss_pred EcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCC--cEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 87 QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG--FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
|+.+........+...... .+++...++. +++.||.++ .+.+||..+..-...-.....+. ......++.
T Consensus 474 d~~t~~W~~~~~~p~~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~------~r~~~~a~v 545 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ------NSLVSAGLE 545 (695)
T ss_dssp ETTTTEEEECCCCSBCCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG------SCCBSCEEE
T ss_pred eCCCCcEEECCCCCCCccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCC------cccceeEEE
Confidence 8877654432222211111 1223323554 777777654 68999988865332211000110 111123344
Q ss_pred ecCCCCcEEEEeec--C-----ceEEEEeCcCCc
Q 013644 165 IDPRNPNYFAVGGS--D-----EYARVYDIRKCH 191 (439)
Q Consensus 165 ~~~~~~~~l~~~~~--d-----g~i~i~d~~~~~ 191 (439)
+....+.+++.|+. + ..+.+||+.+..
T Consensus 546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 55442368888876 2 468899988765
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.05 E-value=0.57 Score=39.59 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=51.4
Q ss_pred EEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCC----CC-------cEEEEEccCCCceee
Q 013644 73 KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE----DG-------FVQHFDLRSDSATRL 141 (439)
Q Consensus 73 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~ 141 (439)
.++.|+. .+..||..+.+... .............+...++. +++.|+. ++ .+..||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSC-EEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCE-EEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 37889988776543 22221112222223334444 6777773 12 167788776653322
Q ss_pred EEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecC-------ceEEEEeCcCCcc
Q 013644 142 FYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHW 192 (439)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~ 192 (439)
- ..+. .......+.+ ++ .+++.|+.+ ..+.+||+.+.+.
T Consensus 94 ~---~~p~------~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 94 P---PLPS------ARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp S---CBSS------CBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred C---CCCc------cccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 1 1110 0111122222 23 777777754 3588899887654
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.04 E-value=0.93 Score=43.22 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCcEEEEecCC----CcEEEEEcccCceeeeE-E-----ecCCCCceEEEEEcc-CCCcEEEEeCCC------CcEEEEE
Q 013644 70 DDRKIITSSAD----GQVRLGQIFEDGRMDTK-R-----LGKHQGRVYKLAVEP-GSPYIIYSCGED------GFVQHFD 132 (439)
Q Consensus 70 ~~~~l~s~~~d----g~i~iw~~~~~~~~~~~-~-----~~~~~~~v~~i~~~~-~~~~~l~s~~~d------g~i~iwd 132 (439)
++..++.|+.+ ..+.+||..+....... . ....... .+++..+ ++. +++.||.+ ..+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTE-EEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCE-EEEEcCCCCCCCccccEEEEe
Confidence 67777777753 46888998877654332 1 1111111 2333333 554 77777754 3478888
Q ss_pred ccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCc--eEEEEeCcCCcccCCCCCCCCccccccccc
Q 013644 133 LRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHL 210 (439)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (439)
..+.+-...- ..+. ......++.+. ++ .+++.|+.++ .+.+||..+.......... . .
T Consensus 475 ~~t~~W~~~~---~~p~------~R~~h~~~~~~-~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g----~-----~ 534 (695)
T 2zwa_A 475 MKTREWSMIK---SLSH------TRFRHSACSLP-DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKD----E-----F 534 (695)
T ss_dssp TTTTEEEECC---CCSB------CCBSCEEEECT-TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSS----G-----G
T ss_pred CCCCcEEECC---CCCC------CcccceEEEEc-CC-EEEEECCCCCCCCEEEEECCCCceEEccCCC----C-----C
Confidence 8876433221 1110 11112222222 33 7888887655 6899999886643221100 0 0
Q ss_pred ccCCCccEEEEEEccC-CCEEEEec---C-----CeEEEEEccCC
Q 013644 211 IGKNNIHITGLAYSNT-SELLISYN---D-----ELVYLFEKNMG 246 (439)
Q Consensus 211 ~~~~~~~i~~~~~~~~-~~~l~~~~---d-----~~i~i~d~~~~ 246 (439)
......-..+.+..+ +++++.|+ + ..+..||+.+.
T Consensus 535 -p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 535 -FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp -GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred -CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 111112233444554 66666653 2 35889998776
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.88 E-value=0.75 Score=39.59 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=26.7
Q ss_pred eEEEEecCCCc--eeEeecccccceEEEeecCCCcEEEEEecCC------eEEEeccCCCCC
Q 013644 298 HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDF 351 (439)
Q Consensus 298 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iw~~~~~~~ 351 (439)
.+.+||+.+.+ .+..+......-.++. .++++++.||.++ .|.++++++++.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 57789987653 3333332222222222 3677888888653 355567777765
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.86 E-value=0.67 Score=38.81 Aligned_cols=244 Identities=9% Similarity=0.041 Sum_probs=122.9
Q ss_pred CCCCEEEEec--CCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEecCC--------------CcEEEEE
Q 013644 24 STGDFLVSGS--DDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSAD--------------GQVRLGQ 87 (439)
Q Consensus 24 ~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iw~ 87 (439)
++|.+|.... .++.|...+.+... ..++ .. . .+--+++ ++++|+-+... ..|+..+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l-~~--~--~~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKL-SN--D--TAMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEE-EE--E--EEEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEc-cC--C--ceeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 4566666543 34556666654433 2332 21 1 2334567 88888766542 3566666
Q ss_pred cccCceeeeEEecCCCCceEEEEEccCCCcEEEEe---CCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEe
Q 013644 88 IFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSC---GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV 164 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (439)
+...+... +.. .. +..|+++++.+.++- .....|+..++...... .+.. + .+ .+
T Consensus 95 ~dg~~~~~---l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-----------~--~~--~~ 151 (302)
T 3s25_A 95 RNGHGSTV---LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-----------H--YL--FT 151 (302)
T ss_dssp TTSCCCEE---EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-----------S--CC--CC
T ss_pred CCCCcceE---eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-----------C--Cc--eE
Confidence 65544322 221 11 236778888766665 33445666666543332 2321 1 11 34
Q ss_pred ecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec--C-CeEEEE
Q 013644 165 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D-ELVYLF 241 (439)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--d-~~i~i~ 241 (439)
++|++..++.+......|.+.++..+.. ..+..+ ... ..+.|++.+|+-.. + ..|..-
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---------------~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~ 212 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSE---------------ALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHV 212 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEE---------------EEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEE
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCE---------------EEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEE
Confidence 5677756666655567788888765431 111111 111 23558888776553 2 366666
Q ss_pred EccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeC--CCCeEEEEecCCCceeEeecccccc
Q 013644 242 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHV 319 (439)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~ 319 (439)
++... ....+.... + .+++|++++|+.++ ..+.|..-++..........+ .
T Consensus 213 ~ldG~-----------------~~~~Lt~~~----~---~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~ 265 (302)
T 3s25_A 213 NINNP-----------------NPVVLTEAN----I---EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---E 265 (302)
T ss_dssp CSSSC-----------------CCEECSCSC----E---EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---C
T ss_pred ECCCC-----------------CeEEEeCCC----c---ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---c
Confidence 66554 222332211 2 22678888887652 346677777764333333222 2
Q ss_pred eEEEeecCCCcEEEEEe-cCCeEEEecc
Q 013644 320 VNQLEPHPHIPMFATCG-IEKTVKLWAP 346 (439)
Q Consensus 320 v~~~~~s~~~~~l~s~~-~dg~i~iw~~ 346 (439)
+..+ ++.+.+|+-.. ..+.|..-++
T Consensus 266 ~~~i--~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 266 FCNI--NVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEE--EECSSEEEEEETTTCCEEEEES
T ss_pred cceE--EEeCCEEEEEECCCCeEEEEEC
Confidence 3333 44555655544 3344443343
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.62 E-value=0.96 Score=38.91 Aligned_cols=95 Identities=7% Similarity=0.017 Sum_probs=47.0
Q ss_pred CCCEEEEecCC-CeEEEEeCCCCcceeeeecC---CcccEEEEEEeecCCCcEEEEecC-C---------CcEEEEEccc
Q 013644 25 TGDFLVSGSDD-KLVIFWDWKDRREKFSYLSG---HLDNIFQTRIMPFTDDRKIITSSA-D---------GQVRLGQIFE 90 (439)
Q Consensus 25 ~~~~l~t~~~d-g~i~iw~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~~~-d---------g~i~iw~~~~ 90 (439)
++++++.|+.+ ..+.++|..+.......+.. ....-.+++.. ++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 57777777643 46888888642111111111 11111222222 6777777776 2 4688899877
Q ss_pred CceeeeEEec-CCCCceEEEEEccCCCcEEEEeCCC
Q 013644 91 DGRMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCGED 125 (439)
Q Consensus 91 ~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~d 125 (439)
.+......+. .......++ . .++ .+++.|+.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~-~-~~~-~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTF-V-HNG-KAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEE-E-ETT-EEEEEECCC
T ss_pred CcEEECCCCCCcccccceEE-E-ECC-EEEEEeCcC
Confidence 6654322222 111111222 2 344 377778754
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.19 E-value=1.3 Score=37.69 Aligned_cols=115 Identities=9% Similarity=0.076 Sum_probs=66.3
Q ss_pred CEEEEecCCCeEEEEeCCCCcceeeeecCCcccEEEEEEeecC-CCcEEEEe-cCCCcEEEEEcccCceeeeEEecC--C
Q 013644 27 DFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT-DDRKIITS-SADGQVRLGQIFEDGRMDTKRLGK--H 102 (439)
Q Consensus 27 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~--~ 102 (439)
.+++.++.||.|.-.|..+++..-++......++....-.... ++..++.. ..||.|..++..++.......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 3677888899999999988877666432211222221111100 22333343 579999999987664432222211 1
Q ss_pred CCceEE---EEE------ccCCCcEEEEeCCCCcEEEEEccCCCceeeEE
Q 013644 103 QGRVYK---LAV------EPGSPYIIYSCGEDGFVQHFDLRSDSATRLFY 143 (439)
Q Consensus 103 ~~~v~~---i~~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 143 (439)
..++.. ... +.++ .+++++.+|.+...|+++|+.+..+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g--~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDE--KVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEEECC----------CCE--EEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccccCCCceeecccccccCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 112221 000 1233 57899999999999999999887764
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.14 E-value=2.5 Score=40.79 Aligned_cols=286 Identities=6% Similarity=-0.015 Sum_probs=152.3
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceeeeecC----CcccEEEEEEeecCCCcEEEEecCCCcEEEEEccc
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSG----HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFE 90 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 90 (439)
..|.++...++|.+.+ |+.. -+..++..+.......... ....|.++...+ ++..|..|+. +-+..++..+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT--TRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET--TTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC--CCCEEEEEEC-CCCeEEcCCC
Confidence 4588888888887655 3344 4777887665322111111 123478887765 5665555553 4577888765
Q ss_pred CceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCC
Q 013644 91 DGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP 170 (439)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (439)
++......+ ....|.++...+++. +. .|+.+ -+.+++..+++....... . ..........|.++....++
T Consensus 221 ~~~~~~~~l--~~~~i~~i~~d~~g~-lW-igT~~-Gl~~~~~~~~~~~~~~~~-~---~~~~~l~~~~i~~i~~D~~g- 290 (758)
T 3ott_A 221 GQIKQTEAF--HNNSIKSLALDGNGD-LL-AGTDN-GLYVYHNDTTPLQHIIHD-S---RNIQSLTNNIIWNIFADQEH- 290 (758)
T ss_dssp TEEEEEEEE--EEEEEEEEEECTTCC-EE-EEETT-EEEEECCTTSCCEEECCC-T---TCTTSCSCSCEEEEEECTTC-
T ss_pred CeEEeccCC--CCCeEEEEEEcCCCC-EE-EEeCC-ceeEEecCCCcEEEEEcC-C---CCcCcCCcCeEEEEEEcCCC-
Confidence 543222222 234588888888886 33 44444 578888776543222111 0 00111124458889888766
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCccccccccc-ccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 249 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~ 249 (439)
.|-.|+..| +.++.... . ...+..... .......|.++.-..+|.+.++.. +.+..++..++...
T Consensus 291 -~lWiGT~~G-l~~~~~~~-~----------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~~~ 356 (758)
T 3ott_A 291 -NIWLGTDYG-ISLSRYNS-A----------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAGERH 356 (758)
T ss_dssp -CEEEEESSS-EEEECCCC------------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTSSCC
T ss_pred -CEEEEeCCc-ccccccCC-c----------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeC-Ccceeecccccccc
Confidence 355555556 44443211 1 000000000 011234688888888888887764 45777765432100
Q ss_pred CCCCCCcccccccccceeEeC-----CCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee--cc----ccc
Q 013644 250 SPLSLSPEDLQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM--VG----DRH 318 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~----h~~ 318 (439)
....+.. ......|.++. ...+|++-+ |+ ++-+..|+..+++..... .. ...
T Consensus 357 --------------~~~~~~~~~~~~~l~~~~v~~i~-~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (758)
T 3ott_A 357 --------------DAIWYRMGDKTYPLSHNRIRHIY-EDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTN 419 (758)
T ss_dssp --------------CCEEECTTCSSSCCSCSCEEEEE-ECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSS
T ss_pred --------------eeEEeccCCcCCCCCCCceEEEE-ECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCc
Confidence 0011110 00112377776 566666544 44 357899998876543321 11 124
Q ss_pred ceEEEeecCCCcEEEEEecCCeEEEeccC
Q 013644 319 VVNQLEPHPHIPMFATCGIEKTVKLWAPM 347 (439)
Q Consensus 319 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 347 (439)
.|.++...+++.+.+ |+..+-|.+++..
T Consensus 420 ~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 420 WTYYIFEDTAGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp SEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred eEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence 588888877776544 5555567777754
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.75 E-value=2.2 Score=38.17 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=60.8
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcce-eeeec------CCcccEEEEEEeecCC---CcEEEEecC-----
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK-FSYLS------GHLDNIFQTRIMPFTD---DRKIITSSA----- 79 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~------~h~~~v~~~~~~~~~~---~~~l~s~~~----- 79 (439)
.....|+|.|+|+++++-...+.|++++..++... ...+. ........|+|+| + +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEEEEeccccC
Confidence 45679999999998877654457888876544321 11111 1245678999998 5 666654432
Q ss_pred --------CCcEEEEEcccCc------eeeeEEec-CCCCceEEEEEccCCCcEEEEeC
Q 013644 80 --------DGQVRLGQIFEDG------RMDTKRLG-KHQGRVYKLAVEPGSPYIIYSCG 123 (439)
Q Consensus 80 --------dg~i~iw~~~~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~ 123 (439)
...|.-+++.... ......+. ........|+|.|+|. |+++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 1245555543221 11111122 1223468999999997 555544
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.57 E-value=1.7 Score=36.27 Aligned_cols=178 Identities=12% Similarity=0.131 Sum_probs=94.8
Q ss_pred EEECCCCCEEEEecCC--------------CeEEEEeCCCCcceeeeecCCcccEEEEEEeecCCCcEEEEec--CCCcE
Q 013644 20 VEFNSTGDFLVSGSDD--------------KLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSS--ADGQV 83 (439)
Q Consensus 20 ~~~s~~~~~l~t~~~d--------------g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i 83 (439)
--++++|++|+-+... ..|+..++...+.. . +.... +..|++ +++.|+-.. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~-l~~~~----~~~~s~--~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-V-LDPDP----CIYASL--IGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-E-EECSC----EEEEEE--ETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-E-eecCC----ccEEEE--eCCEEEEEeecCCCCc
Confidence 3457888888876542 46777777666432 2 22221 236777 888888665 34444
Q ss_pred EEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEE
Q 013644 84 RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAI 163 (439)
Q Consensus 84 ~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (439)
.||.+....... ..+..+.. .+++++++.+..+......|...++..+.....+.. . .. .
T Consensus 130 ~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~------------~--~~-~ 189 (302)
T 3s25_A 130 SLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC------------N--CY-K 189 (302)
T ss_dssp EEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS------------C--EE-E
T ss_pred eEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC------------C--cc-c
Confidence 455443222111 22333322 456788887776766567888888876654333210 1 11 2
Q ss_pred eecCCCCcEEEEeecC-ceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEec---CCeEE
Q 013644 164 VIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DELVY 239 (439)
Q Consensus 164 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---d~~i~ 239 (439)
.+.|+++.++.+-..+ ..|..-++..... ..+. ...+ ..++|++..|.-+. .+.|.
T Consensus 190 ~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----------------~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~ 249 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRDNAIVHVNINNPNP----------------VVLT--EANI--EHYNVYGSLIFYQRGGDNPALC 249 (302)
T ss_dssp EEEEETTEEEEEEGGGTTEEEEECSSSCCC----------------EECS--CSCE--EEEEEETTEEEEEECSSSCEEE
T ss_pred eeeecCCEEEEEEcCCCcEEEEEECCCCCe----------------EEEe--CCCc--ceEEECCCEEEEEECCCCcEEE
Confidence 3558775554444333 3566666665431 1111 1122 23778887776542 34566
Q ss_pred EEEccC
Q 013644 240 LFEKNM 245 (439)
Q Consensus 240 i~d~~~ 245 (439)
.-++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 666554
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.2 Score=42.51 Aligned_cols=107 Identities=9% Similarity=0.123 Sum_probs=66.4
Q ss_pred ceEEEeCCCCeEEEEecCCCceeEeecccc-cceEEEee--cC-CCcEEEEE-ecCCeEEEeccCCCCCCCCCCchhhhh
Q 013644 288 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEP--HP-HIPMFATC-GIEKTVKLWAPMPTDFPPLPDNAEKIM 362 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~--s~-~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~ 362 (439)
..++.++.||.|.-+|..+|+.+..+.... .++....- .+ ++..++.. +.||.|..++..++... ++-......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence 578888999999999999999988876541 22222110 11 23334333 57899988888766332 222222222
Q ss_pred hhhccc-------------cCcceEEEeCCCcEEEEEEecccceee
Q 013644 363 KANKQG-------------REDHSRITLTPDVIMHVLRLQRRQTLA 395 (439)
Q Consensus 363 ~~~~~~-------------~~~~~~~~~s~dg~v~~w~~~~~~~~~ 395 (439)
...... ..+..+.+++.+|++...++.+++..-
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 111011 034567889999999999999987764
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.13 E-value=11 Score=34.42 Aligned_cols=112 Identities=6% Similarity=-0.068 Sum_probs=63.9
Q ss_pred cEEEEEEccCCCEEEEec--CCeEEEEEccCCCCCCCC-CCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEe
Q 013644 217 HITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPL-SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293 (439)
Q Consensus 217 ~i~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~ 293 (439)
....+.++|+|+++++++ +.++.++++..-...... .+.+. ....-... ..-.....+ |.++|....+-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~------~~~~ae~e-~GlGPlHt~-Fd~~G~aYTtl 395 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPR------DVIVGEPE-LGLGPLHTT-FDGRGNAYTTL 395 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGG------GGEEECCB-CCSCEEEEE-ECSSSEEEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcc------cceEeecc-CCCcccEEE-ECCCCceEeee
Confidence 345678899999998886 889999998742100000 00000 00010111 111245556 78899666666
Q ss_pred CCCCeEEEEecCCC----------ceeEeecccccceEEE-----eecCCCcEEEEEe
Q 013644 294 SDCGHLFIWKKKGG----------KLVRLMVGDRHVVNQL-----EPHPHIPMFATCG 336 (439)
Q Consensus 294 ~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~-----~~s~~~~~l~s~~ 336 (439)
--|.+|.-|++... ..+..+.-|-.+-.-. .-.|+|++|++..
T Consensus 396 fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 396 FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 78999999998753 2344444443221111 2357899988875
No 348
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.85 E-value=9.1 Score=33.07 Aligned_cols=162 Identities=10% Similarity=0.180 Sum_probs=84.0
Q ss_pred cEEEEEccCC--CceeeEEeeccCCCCCCCCceeeeEEEeec---CC----CCcEEEEeecCceEEEEeCcCCcccCCCC
Q 013644 127 FVQHFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVID---PR----NPNYFAVGGSDEYARVYDIRKCHWYSPIS 197 (439)
Q Consensus 127 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 197 (439)
.|.+||+.++ +.++.+........ ....+..+.+. |. ++...++=...+.|.+||+.+++......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-----~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-----KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-----CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-----cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc
Confidence 5788999998 88877765321110 13356777776 22 22233333356789999999877544321
Q ss_pred CCCCcccccccccccC----CCccEEEEEEccC----CCEEEEec--CCeEEEEEccCCCCCCCCCCCccccccccccee
Q 013644 198 SDTPVDTFCPRHLIGK----NNIHITGLAYSNT----SELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 267 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~----~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
........ ......+ -...+..|+++|+ ++.|.-.. ...++-.....-.... ....++.
T Consensus 199 ~~~~pd~~-~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~----------~~~~v~~ 267 (381)
T 3q6k_A 199 PTFKAERP-TKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG----------GKLNPEL 267 (381)
T ss_dssp GGGSCCSC-EEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT----------CCCCCEE
T ss_pred CCCccccC-cceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc----------hhhceEE
Confidence 10000000 0000011 1346889999998 67776664 3334433321110000 0112222
Q ss_pred EeCCCC-cceeeeEEeeC-CCCceEEEeCCCCeEEEEecCC
Q 013644 268 YSGHRN-SQTVKGVNFFG-PNDEYVMSGSDCGHLFIWKKKG 306 (439)
Q Consensus 268 ~~~~~~-~~~v~~~~~~s-~~~~~l~~~~~dg~i~iwd~~~ 306 (439)
+ +... ...-..++ +. .+|.++++--..+.|..|+..+
T Consensus 268 ~-G~kg~~s~~~~~~-~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 268 L-GNRGKYNDAIALA-YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp E-EECCTTCCEEEEE-ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred e-eecCCCCCcceEE-EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 2 2221 11123344 54 6788888888889999999875
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.82 E-value=0.22 Score=44.94 Aligned_cols=77 Identities=8% Similarity=-0.010 Sum_probs=54.5
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCc---------eeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSA---------TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA 174 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 174 (439)
.....+.++|||+++++++-.+.++.++|++.... ...+... .. -.......+|.++| +...
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e-------~GlGPlHt~Fd~~G-~aYT 393 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PE-------LGLGPLHTTFDGRG-NAYT 393 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CB-------CCSCEEEEEECSSS-EEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-cc-------CCCcccEEEECCCC-ceEe
Confidence 34457889999999999999999999999985211 1111110 00 12235678999987 7777
Q ss_pred EeecCceEEEEeCcC
Q 013644 175 VGGSDEYARVYDIRK 189 (439)
Q Consensus 175 ~~~~dg~i~i~d~~~ 189 (439)
+-..|..|..|++..
T Consensus 394 tlfidSqvvkWni~~ 408 (638)
T 3sbq_A 394 TLFIDSQVVKWNMEE 408 (638)
T ss_dssp EETTTTEEEEEEHHH
T ss_pred eeeecceEEEEeccH
Confidence 777899999999875
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.92 E-value=23 Score=35.21 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=31.3
Q ss_pred eeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 276 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 276 ~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
.+.+++ ..++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~-~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMI-FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEE-EETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEe-ecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 466666 5678889999999999999999999988764
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.50 E-value=14 Score=30.37 Aligned_cols=223 Identities=10% Similarity=0.037 Sum_probs=112.4
Q ss_pred CceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEE
Q 013644 104 GRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYAR 183 (439)
Q Consensus 104 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 183 (439)
..|..++.-... .++. . ||.|+.|-......+..- .. ....|..++.... ..++. . ||.|+
T Consensus 24 ~~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~p-~~----------~~~~i~~ia~G~~--hs~~l-~-~G~v~ 84 (282)
T 3qhy_B 24 SGVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTMP-AA----------TQSGVDAIAAGNY--HSLAL-K-DGEVI 84 (282)
T ss_dssp SSCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSCC-GG----------GGSCCCEEEECSS--EEEEE-E-TTEEE
T ss_pred CCCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCCC-cc----------CCCCEEEEEeCCC--EEEEE-E-CCEEE
Confidence 356777765443 3433 4 899999976543322210 00 1224666766543 44554 4 89999
Q ss_pred EEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 184 VYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 184 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
.|-....-.+. . |... ...|..++......++++ ++.|+.|-........
T Consensus 85 ~wG~n~~Gqlg-----~------P~~~----~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg------------- 134 (282)
T 3qhy_B 85 AWGGNEDGQTT-----V------PAEA----RSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTT------------- 134 (282)
T ss_dssp EEECCTTSTTC-----C------CGGG----SSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTS-------------
T ss_pred EeeCCCCCCCC-----C------Cccc----CCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCC-------------
Confidence 99866432211 0 1111 235777776655444444 9999999765431110
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEE
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
... .....|..+++ ...+.+.-. ||.|+.|-....-.+.....-...|..++...+.. ++. .||.|..
T Consensus 135 --~~~---~~~~~i~~i~~---G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~ 202 (282)
T 3qhy_B 135 --VPA---EAQSGVTALDG---GVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIA 202 (282)
T ss_dssp --CCG---GGGSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEE
T ss_pred --CCc---cCCCCeEEEEc---ccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEE
Confidence 000 00112555552 222222233 68999997554222211111234677787755433 333 5999999
Q ss_pred eccCCCCCCCCCC-chhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 344 WAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 344 w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
|-....-...++. ....+..+ .......+... ||.+..|-....
T Consensus 203 wG~n~~gqlg~p~~~~~~v~~i---~~G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 203 WGDNRYKQTTVPTEALSGVSAI---ASGEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp EECCTTSTTCCCGGGGSSCCEE---EECSSCEEEEE-TTEEEEESTTCC
T ss_pred EECCCCCCCCCCcccCCCceEE---EcCCCEEEEEE-CCEEEEecCCCC
Confidence 9875432222221 11112111 12223444455 899999975443
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.81 E-value=28 Score=33.21 Aligned_cols=116 Identities=9% Similarity=-0.008 Sum_probs=61.4
Q ss_pred eEEEE-ECCCCCEEEEe----c-CCCeEEEEeCCCCcceeeeecC-Ccc------cEEEEEEeecCCCcEEEEe------
Q 013644 17 VNAVE-FNSTGDFLVSG----S-DDKLVIFWDWKDRREKFSYLSG-HLD------NIFQTRIMPFTDDRKIITS------ 77 (439)
Q Consensus 17 I~~~~-~s~~~~~l~t~----~-~dg~i~iw~~~~~~~~~~~~~~-h~~------~v~~~~~~~~~~~~~l~s~------ 77 (439)
...+. ++|++++++.+ + .-..++++|+.+++.+..-+.. -+. ....++|.. ++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC--CCEEEEEeCCCCCC
Confidence 34455 89999887753 2 3358999999998655332220 000 113457875 55555542
Q ss_pred ----cCCCcEEEEEcccCceeeeEEecCCCCce-EEEEEccCCCc----EEEEeCC---CCcEEEEEcc
Q 013644 78 ----SADGQVRLGQIFEDGRMDTKRLGKHQGRV-YKLAVEPGSPY----IIYSCGE---DGFVQHFDLR 134 (439)
Q Consensus 78 ----~~dg~i~iw~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~----~l~s~~~---dg~i~iwd~~ 134 (439)
+....|+.|.+-+........+.+....+ .+...++++.+ ++++.+. ...+.+.+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 11356888888665332222333333332 34555667664 3444332 2345555554
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.86 E-value=17 Score=29.91 Aligned_cols=224 Identities=14% Similarity=0.029 Sum_probs=115.1
Q ss_pred ccEEEEEEeecCCCcEEEEecCCCcEEEEEcccCceeeeEEecCCCCceEEEEEccCCCcEEEEeCCCCcEEEEEccCCC
Q 013644 58 DNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDS 137 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 137 (439)
..|..++... ...++. . ||.|..|-......+-. -......|..++..... .++. . ||.|+.|-.....
T Consensus 24 ~~i~~ia~G~---~h~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 24 SGVDAIAGGY---FHGLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SSCCEEEECS---SEEEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTS
T ss_pred CCCcEEEeCC---CeEEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCC
Confidence 3566666542 333333 4 89999998655433221 11123467777765543 3434 4 8999999765433
Q ss_pred ceeeEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCcc
Q 013644 138 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 217 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (439)
....-. . -...|..++.... ..+.-. +|.|+.|-....-.+. .+ ......
T Consensus 93 qlg~P~--~---------~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg-----~~----------~~~~~~ 142 (282)
T 3qhy_B 93 QTTVPA--E---------ARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT-----VP----------AEAQSG 142 (282)
T ss_dssp TTCCCG--G---------GSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS-----CC----------GGGGSS
T ss_pred CCCCCc--c---------cCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC-----CC----------ccCCCC
Confidence 221100 0 1224777776653 333334 8999999865432111 00 111234
Q ss_pred EEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC
Q 013644 218 ITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 297 (439)
Q Consensus 218 i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg 297 (439)
|..++......+++ . ++.++.|-........ .+... ...+..+++ . ....++. .||
T Consensus 143 i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg-------------~p~~~-----~~~v~~i~~-G-~~hs~al--~~G 198 (282)
T 3qhy_B 143 VTALDGGVYTALAV-K-NGGVIAWGDNYFGQTT-------------VPAEA-----QSGVDDVAG-G-IFHSLAL--KDG 198 (282)
T ss_dssp EEEEEECSSEEEEE-E-TTEEEEEECCTTSTTS-------------CCGGG-----GSSEEEEEE-C-SSEEEEE--ETT
T ss_pred eEEEEcccCEEEEE-E-CCEEEEecCCCCCCCC-------------Cceec-----CCCeEEEEe-c-CCEEEEE--ECC
Confidence 66665544433333 3 7999999765431110 00000 112666652 2 2233333 589
Q ss_pred eEEEEecCCCceeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCC
Q 013644 298 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 349 (439)
Q Consensus 298 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 349 (439)
.|+.|-....-.+..-......|..++......++++ ||.|..|-....
T Consensus 199 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 199 KVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp EEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred eEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 9999975543222111111245777776554433333 999999987653
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.52 E-value=21 Score=30.81 Aligned_cols=221 Identities=13% Similarity=0.115 Sum_probs=115.8
Q ss_pred cceEEEEE-CCCCCEEEEecC--C---CeEEEEeCCC-------Ccce-eeee----cCCcccEEEEEEeecCCCcEEEE
Q 013644 15 GCVNAVEF-NSTGDFLVSGSD--D---KLVIFWDWKD-------RREK-FSYL----SGHLDNIFQTRIMPFTDDRKIIT 76 (439)
Q Consensus 15 ~~I~~~~~-s~~~~~l~t~~~--d---g~i~iw~~~~-------~~~~-~~~~----~~h~~~v~~~~~~~~~~~~~l~s 76 (439)
.-.+.++. +.+|+++++--. + -++-..+... ...+ .-+- ..+--.|..+...+ .+.+-+.
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~--~~rLWVL 103 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDD--CRRLWVV 103 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECT--TCEEEEE
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcC--CCcEEEE
Confidence 34567888 688888887532 2 2444444321 1112 2211 01234577777765 5544332
Q ss_pred --ecC-------------CCcEEEEEcccC--ceeeeEEecC----CCCceEEEEEc---cC----CCcEEEEeCCCCcE
Q 013644 77 --SSA-------------DGQVRLGQIFED--GRMDTKRLGK----HQGRVYKLAVE---PG----SPYIIYSCGEDGFV 128 (439)
Q Consensus 77 --~~~-------------dg~i~iw~~~~~--~~~~~~~~~~----~~~~v~~i~~~---~~----~~~~l~s~~~dg~i 128 (439)
|-. --.|.+||+.++ +.+....+.. ....+..+++. |. +.+..++=...+.|
T Consensus 104 DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gL 183 (381)
T 3q6k_A 104 DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGAL 183 (381)
T ss_dssp ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEE
T ss_pred eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcE
Confidence 211 125889999998 7765555532 23567888887 22 33444455567889
Q ss_pred EEEEccCCCceeeEEeeccCCCCCC----CC----ceeeeEEEeecCC----CCcEEEEeecCceEEEEeCcCCcccCCC
Q 013644 129 QHFDLRSDSATRLFYCSSFSENSKQ----PM----NSIRLNAIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPI 196 (439)
Q Consensus 129 ~iwd~~~~~~~~~~~~~~~~~~~~~----~~----~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 196 (439)
.++|+.+++.-+... ..+.+.... .. -...+..++++|+ +..+.+..-... ++|.+.+.-+...
T Consensus 184 IVydl~~~~swRv~~-~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~- 259 (381)
T 3q6k_A 184 FIYDHKKQDSWNVTH-PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQK- 259 (381)
T ss_dssp EEEETTTTEEEEEEC-GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSST-
T ss_pred EEEECCCCcEEEEcc-CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCc-
Confidence 999999998777653 222221000 00 1236888999997 433444433332 3444443221111
Q ss_pred CCCCCcccccccccccCCCccEEEEEEc-cCCCEEEEe-cCCeEEEEEccC
Q 013644 197 SSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISY-NDELVYLFEKNM 245 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i~i~d~~~ 245 (439)
.....++.+ .. .+....-..+++. .+|.++++- ....|..|+..+
T Consensus 260 ~~~~~v~~~---G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 260 GGKLNPELL---GN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TCCCCCEEE---EE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred chhhceEEe---ee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 001111100 00 1112344556775 667766665 488999999865
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.23 E-value=22 Score=35.33 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=31.6
Q ss_pred ceEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEe
Q 013644 105 RVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYC 144 (439)
Q Consensus 105 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 144 (439)
.+.+++..++.. ++++-+.|+++|+|++.+++++.....
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeecc
Confidence 466777777776 567899999999999999998877654
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.52 E-value=29 Score=31.00 Aligned_cols=108 Identities=9% Similarity=0.012 Sum_probs=58.3
Q ss_pred cceEEEEECCCCC-EEEEecCCCeEEEEeCCCCc---ceeee----ec----CCcccEEEEEEeecCC----CcEEEEec
Q 013644 15 GCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRR---EKFSY----LS----GHLDNIFQTRIMPFTD----DRKIITSS 78 (439)
Q Consensus 15 ~~I~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~---~~~~~----~~----~h~~~v~~~~~~~~~~----~~~l~s~~ 78 (439)
..-..|+|.|+|+ .|+++...|.|++++..... .+..+ .. ........|+|+| + +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--THHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CCcCCCEEEEEEe
Confidence 4567999999996 34445678999999754321 11111 11 1145688999998 5 33333322
Q ss_pred C--C----------CcEEEEEcccC--------ceeeeEEe--cCCCCceEEEEEccCCCcEEEEeCCC
Q 013644 79 A--D----------GQVRLGQIFED--------GRMDTKRL--GKHQGRVYKLAVEPGSPYIIYSCGED 125 (439)
Q Consensus 79 ~--d----------g~i~iw~~~~~--------~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~d 125 (439)
. + ..|.-|.+... ....+..+ .........|+|.|||. |+++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCC
Confidence 1 1 13444555321 01111111 12223467899999996 55555543
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=78.53 E-value=10 Score=35.70 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=51.0
Q ss_pred ccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCccc-ccccccceeEeCC---CCcceeeeEEeeCCCCceEE
Q 013644 216 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED-LQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVM 291 (439)
Q Consensus 216 ~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~v~~~~~~s~~~~~l~ 291 (439)
.+-.-++.+++. ++++-.||.+.-.+-..........++... ....+.. +.+. .....|.++. .+..+++
T Consensus 162 ~Ph~L~avs~~~-liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~l--f~~~~~~~~~~~Is~~~---~~~~fLf 235 (729)
T 3f7f_A 162 VPHFLFYVSPQF-SVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRF--FSRSSKSDYDSVISCKL---FHERYLI 235 (729)
T ss_dssp CEEEEEECSSSB-EEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTT--CCTTCSSCCCCEEEEEE---ETTTEEE
T ss_pred CCcEEEEECCCe-EEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHh--hcCCCCCCcCceEEEec---cCCcEEE
Confidence 344455556554 777777877666654433111111111111 1111111 2221 1112344444 3578999
Q ss_pred EeCCCCeEEEEecCCCceeEeec
Q 013644 292 SGSDCGHLFIWKKKGGKLVRLMV 314 (439)
Q Consensus 292 ~~~~dg~i~iwd~~~~~~~~~~~ 314 (439)
+-+.|.++|+|++.+++++....
T Consensus 236 tL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 236 VLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEcCCeEEEEEcCCCceEEeec
Confidence 99999999999999999876654
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=75.00 E-value=13 Score=34.41 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred eeeEEeeCCCCceEEEeCCC------------CeEEEEecCCCceeEeecccc-cceEEEeecCCCcEEEEE
Q 013644 277 VKGVNFFGPNDEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~ 335 (439)
.-.|+ |+|.|+++++-..+ +.+.+.+..+++..+.+.++. ..++.++|+||++.|+..
T Consensus 478 PDNL~-fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEE-ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceE-ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45566 89999977764432 356677778888877777665 589999999999977664
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.14 E-value=26 Score=35.68 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=29.8
Q ss_pred eeeEEeeCCCCceEEEeCCCCeEEEEecCCCceeEee
Q 013644 277 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 313 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 313 (439)
+.+++ ..++..++++-+.|+++|+|++.+++++.+.
T Consensus 240 ~vs~~-~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMI-FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCE-EETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEee-ccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 44555 4578899999999999999999999988764
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.51 E-value=34 Score=31.37 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=41.9
Q ss_pred eeeEEeeCCCCceEEEeCC------------CCeEEEEecCCCceeEeeccc-ccceEEEeecCCCcEEEEE
Q 013644 277 VKGVNFFGPNDEYVMSGSD------------CGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATC 335 (439)
Q Consensus 277 v~~~~~~s~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~ 335 (439)
...|. |+++|.+.++... .+.+..++..++++...+.+. ...++.++|+||++.|+.+
T Consensus 478 PDnL~-fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEE-ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceE-ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 56677 7889987773221 236777788788877666544 3578999999999977665
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=61.86 E-value=1.2e+02 Score=29.40 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=74.1
Q ss_pred ccceEEEEECCC-CCEEEEecCCCeEEEEeCCCCcceeeeecC------CcccEEEEEEeecCCCcEEEEecCCCc----
Q 013644 14 KGCVNAVEFNST-GDFLVSGSDDKLVIFWDWKDRREKFSYLSG------HLDNIFQTRIMPFTDDRKIITSSADGQ---- 82 (439)
Q Consensus 14 ~~~I~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~dg~---- 82 (439)
.+.|.+|+++|. ...+..+...+.|...+ +.++.-..+... ....+.++++.|. +.+.++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~-~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCC-CCCEEEEEeCccCCCcc
Confidence 468999999995 34555566556555444 223221121111 1246999999872 2234444432211
Q ss_pred EEEEEcccCceeeeE-Eec----C---CCCceEEEEEccCCCcEEEEeCCCCcEEEEEccC-CCceeeEEeeccCCCCCC
Q 013644 83 VRLGQIFEDGRMDTK-RLG----K---HQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRS-DSATRLFYCSSFSENSKQ 153 (439)
Q Consensus 83 i~iw~~~~~~~~~~~-~~~----~---~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 153 (439)
-.||.-..+...-.. ... . ....+..++++|..+..++.+...+. +|-... ++.-..+.. .+...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~---~~~~~- 165 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTS---IPDAF- 165 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETT---SCCCC-
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCcc---Ccccc-
Confidence 344444333222111 111 0 01135678888865555666664443 333332 332222111 00000
Q ss_pred CCceeeeEEEeecCCCCcEEEEeecC
Q 013644 154 PMNSIRLNAIVIDPRNPNYFAVGGSD 179 (439)
Q Consensus 154 ~~~~~~v~~~~~~~~~~~~l~~~~~d 179 (439)
.....+..+.++|.++..++++..+
T Consensus 166 -~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 166 -TNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp -STTTCEEEEEECTTSTTCEEEEESS
T ss_pred -CCCCCeEEEEECCCCCCEEEEEEcC
Confidence 0113467888988665566666544
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=58.79 E-value=79 Score=26.35 Aligned_cols=205 Identities=9% Similarity=0.083 Sum_probs=101.2
Q ss_pred cEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCC
Q 013644 171 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 250 (439)
Q Consensus 171 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 250 (439)
.++++.+.+|.|+-..+...+....- ....... .+.....-+..+..+....+++..+.|.++-+....-....
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~--~~g~~~~----~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTG--GKGLSSF----DLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSS--CCCEECC----CCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccC--CCCceec----ccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 67888999999998877654321100 0000000 01222333333444455566677778888887764321000
Q ss_pred CCCCCcccccccccceeEeCCCCcceeeeEEeeCC--CCceEEEeCCCCeEEEEecCCC-------ceeEeecccccceE
Q 013644 251 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGG-------KLVRLMVGDRHVVN 321 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~ 321 (439)
.. .....+ .....+.. ...+.++..... +..+++..+.+|.++...+... .....+.. ...+.
T Consensus 83 r~-~~G~~i---~~~l~l~~---~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv 154 (312)
T 1suu_A 83 RA-SKGQNI---SELINLGD---QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVT 154 (312)
T ss_dssp ------CBG---GGTSCCCT---TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEE
T ss_pred cc-CCCcCh---hhccCCCC---CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEE
Confidence 00 000000 00111111 122444432321 4567888899999998876432 22223333 34555
Q ss_pred EEeecCCCcEEEEEecCCeEEEeccCCCC----------CCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEEeccc
Q 013644 322 QLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 391 (439)
Q Consensus 322 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~~~~~ 391 (439)
.+........++..+.+|.+..+....-. ...+.. ...+...... .+...++..+..|..+...+..-
T Consensus 155 ~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v-~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 155 SAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSV-KENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEEC-TTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEE-CCCCeEEEEECCCceEEEEHHHh
Confidence 55554445567788889998888764311 111221 1222222111 12335667777888888777543
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=54.74 E-value=1.2e+02 Score=27.11 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=33.9
Q ss_pred ccEEEEEEeecCCCc-EEEEecCCCcEEEEEcccCc-eeeeEEec---------CCCCceEEEEEccC
Q 013644 58 DNIFQTRIMPFTDDR-KIITSSADGQVRLGQIFEDG-RMDTKRLG---------KHQGRVYKLAVEPG 114 (439)
Q Consensus 58 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~-~~~~~~~~---------~~~~~v~~i~~~~~ 114 (439)
..-+.|+|.| ++. .|+++...|.|++++..... ......+. ........|+|+|+
T Consensus 14 ~~P~~~a~~p--dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSG--DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCS--SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECC--CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999 886 45556678999998753221 11111111 11356789999996
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.56 E-value=57 Score=30.18 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=37.2
Q ss_pred eEEEEECCCCCEEEEecCC------------CeEEEEeCCCCcceeeeecC-CcccEEEEEEeecCCCcEEEEe
Q 013644 17 VNAVEFNSTGDFLVSGSDD------------KLVIFWDWKDRREKFSYLSG-HLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 17 I~~~~~s~~~~~l~t~~~d------------g~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.-.|+|+|.|++++.-..+ ..+.+.+..+++ +.+++.+ ....++.++|+| |++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-~~rf~~~P~gaE~TG~~fsp--Dg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe-EEEEEeCCCCccCcCeeECC--CCCEEEEE
Confidence 4568999999876654322 234455555554 4444444 456899999999 88777654
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=52.41 E-value=1.1e+02 Score=26.21 Aligned_cols=210 Identities=9% Similarity=-0.011 Sum_probs=97.3
Q ss_pred ccCCCcEEEEeCCCCcEEEEEccCCCcee----eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeC
Q 013644 112 EPGSPYIIYSCGEDGFVQHFDLRSDSATR----LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI 187 (439)
Q Consensus 112 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 187 (439)
-|+.+ ++++.+.+|.|+--.+..-+..+ -.....+. ....+..+...... ..++..+..|.++-+..
T Consensus 4 I~~e~-~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-------e~D~l~~~~~~~t~-d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPED-VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-------EEDFIDQLWLVNTH-DTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCC-EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-------CCCCEEEEEEECTT-CEEEEEETTSEEEEEEG
T ss_pred ccCCC-EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-------CCCEEEEEEEecCC-CEEEEEeCCCeEEEEEH
Confidence 35565 56788899999876654311110 00111111 12234444433333 45666677787666554
Q ss_pred cCCcccCCCCCCCCcccccccccccCCCccEEEEEEcc---CC-CEEEEecCCeEEEEEccCCCCCCCCCCCcccccccc
Q 013644 188 RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE 263 (439)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 263 (439)
..-..........++..+. . ......|.++.... ++ .++.+...|.++...+..-..... ...
T Consensus 75 ~eip~~~r~a~G~~i~~ll--~--L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~---------~G~ 141 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWI--P--LESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA---------RGK 141 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSC--C--CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT---------TCE
T ss_pred HHCcCCCcccCCcCHhhcc--C--CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC---------Cce
Confidence 3322111111111111110 0 12234455554332 23 344555699999988754321100 000
Q ss_pred cceeEeCCCCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCCce-------eE--eecccccceEEEeecC-------
Q 013644 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-------VR--LMVGDRHVVNQLEPHP------- 327 (439)
Q Consensus 264 ~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~--~~~~h~~~v~~~~~s~------- 327 (439)
....+.. . ..+..+... .....++..+.+|.+..++...-.. +. .+. ....|.++...+
T Consensus 142 ~ai~L~~--~-d~lv~v~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~ 216 (370)
T 3l6v_A 142 IAINLDE--G-DALVGVALT-DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVED 216 (370)
T ss_dssp ESSCCCT--T-CCEEEEEEE-CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----
T ss_pred EEEEeCC--C-CEEEEEEEe-CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccc
Confidence 1111221 1 124444423 3445677777788888887543111 11 122 123454544433
Q ss_pred ----------------------------CCcEEEEEecCCeEEEeccCC
Q 013644 328 ----------------------------HIPMFATCGIEKTVKLWAPMP 348 (439)
Q Consensus 328 ----------------------------~~~~l~s~~~dg~i~iw~~~~ 348 (439)
++..+++.+..|..+...+..
T Consensus 217 ~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 217 EVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------------------------------CEEEEEETTSEEEEEEGGG
T ss_pred ccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 345788899999988877643
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.38 E-value=1e+02 Score=25.63 Aligned_cols=233 Identities=9% Similarity=-0.014 Sum_probs=0.0
Q ss_pred CCCCcEEEEeecCceEEEEeCcCCcccCCCCCCCCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEc---
Q 013644 167 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEK--- 243 (439)
Q Consensus 167 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~--- 243 (439)
|+. ..+++.+.+|.|+--.+...+....-........+ .....-+..+..+....+++..+.|.++.+..
T Consensus 1 ~~e-~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~------ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~el 73 (307)
T 1zi0_A 1 TQE-DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARI------KEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 73 (307)
T ss_dssp CCC-EEEEEEETTSEEEEEECC--------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred CCC-cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeee------CCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHC
Q ss_pred ------cCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeC--CCCceEEEeCCCCeEEEEecC-------CCc
Q 013644 244 ------NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG--PNDEYVMSGSDCGHLFIWKKK-------GGK 308 (439)
Q Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s--~~~~~l~~~~~dg~i~iwd~~-------~~~ 308 (439)
..+ .+...+-.-.....|.++.... .++.+++..+.+|.++.-.+. .+.
T Consensus 74 p~~~~~a~G----------------~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~ 137 (307)
T 1zi0_A 74 PEATRGARG----------------RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGK 137 (307)
T ss_dssp CCCCSSSCC----------------EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCE
T ss_pred cCCCCCCCC----------------eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCe
Q ss_pred eeEeecccccceEEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCC---------CchhhhhhhhccccCcceEEEeCC
Q 013644 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP---------DNAEKIMKANKQGREDHSRITLTP 379 (439)
Q Consensus 309 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~ 379 (439)
....+..+ +.+..+........++..+.+|.+..+....-....-. .....+...... .+...++.++.
T Consensus 138 ~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~-~~~~~ll~~T~ 215 (307)
T 1zi0_A 138 VAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP-RGDGAILTATQ 215 (307)
T ss_dssp ESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECC-CSSCEEEEEET
T ss_pred EEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEe-cCCCEEEEEEc
Q ss_pred CcEEEEEEecccceeeeecccccccccCCccccceEEEeeeCCCCcc
Q 013644 380 DVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDAS 426 (439)
Q Consensus 380 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (439)
.|..+...+..-.......+....+.+....++ +..+-.-+++++
T Consensus 216 ~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~--lv~~~~v~~~~~ 260 (307)
T 1zi0_A 216 NGYGKRTAVAEYPTKSRATKGVISIKVTERNGL--VVGAVQVDDCDQ 260 (307)
T ss_dssp TSEEEEECGGGSCCCCTTSCCEESSCCCTTTCS--EEEEEEECTTCE
T ss_pred CCceEEEEHHHhccCCCCCCCEEeeEecCCCCe--EEEEEEeCCCce
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.68 E-value=11 Score=38.39 Aligned_cols=36 Identities=22% Similarity=0.049 Sum_probs=29.7
Q ss_pred ceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee
Q 013644 16 CVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS 51 (439)
Q Consensus 16 ~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 51 (439)
.|.+++..++..+++|-+.|+++|||++.+++++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 455666777888999999999999999999876554
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.84 E-value=24 Score=33.34 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=27.5
Q ss_pred cceEEEEECCCCCEEEEecCCCeEEEEeCCCCcceee
Q 013644 15 GCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFS 51 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 51 (439)
..|.++.+. ..++++-+.|.++|+|++.+++.+..
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEe
Confidence 346666653 67999999999999999999875544
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=49.05 E-value=1.3e+02 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=17.8
Q ss_pred eeEEEeecCCCCcEEEEeecCceEEEEe
Q 013644 159 RLNAIVIDPRNPNYFAVGGSDEYARVYD 186 (439)
Q Consensus 159 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d 186 (439)
.+.++.++|.++..+.++...+ |...+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 4788999987556677766554 44443
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.86 E-value=1.1e+02 Score=28.16 Aligned_cols=60 Identities=12% Similarity=0.267 Sum_probs=39.1
Q ss_pred cceEEEEECCCCCEEE-EecC-----------CCeEEEEeCCCCcceeeeecC-CcccEEEEEEeecCCCcEEEEe
Q 013644 15 GCVNAVEFNSTGDFLV-SGSD-----------DKLVIFWDWKDRREKFSYLSG-HLDNIFQTRIMPFTDDRKIITS 77 (439)
Q Consensus 15 ~~I~~~~~s~~~~~l~-t~~~-----------dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~ 77 (439)
.....|.|.++|.+.+ |=.. ...+..++..+++ +..++.. ....++.++|+| |++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-l~~fl~~P~~aEpnGiafSP--D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCe-EEEEEeCCCCccccCCEECC--CCCEEEEE
Confidence 4567899999998776 3221 1145556655554 3444443 345789999999 98888765
No 371
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=36.72 E-value=2.9e+02 Score=26.37 Aligned_cols=102 Identities=6% Similarity=0.034 Sum_probs=54.3
Q ss_pred CCeEEEEEccCCCCCCCCCCCcccccccccceeEeCCCCcceeeeEEeeCCCCceEEEeCCCC--eEEEEecCCCc-eeE
Q 013644 235 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG--HLFIWKKKGGK-LVR 311 (439)
Q Consensus 235 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~-~~~ 311 (439)
.+.|...++.++.... ......+.+-.+.....+..+. +..+ .++++...++ .+.++++.+++ ...
T Consensus 319 ~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~-~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~ 387 (711)
T 4hvt_A 319 AGSLVALHFTDLLKTE---------SDKTSLKILFTPTANEVFNFIS-TTKD-RVFLATYDNVVAKVVTFTLENEQWTKP 387 (711)
T ss_dssp TTCEEEEEGGGGGSCG---------GGCTTCEEEECCCTTEEEEEEE-ECSS-CEEEEEEETTEEEEEEECEETTEECCC
T ss_pred CCeEEEEECCcccccc---------cccccceEEECCCCCCeEEEEE-EECC-EEEEEEEECCEEEEEEEECCCCceEEE
Confidence 5678888876531000 0001223333344444577777 4544 5666666666 46777876664 222
Q ss_pred e-eccc-ccceEEEeecCCCc-EEEEEec---CCeEEEeccC
Q 013644 312 L-MVGD-RHVVNQLEPHPHIP-MFATCGI---EKTVKLWAPM 347 (439)
Q Consensus 312 ~-~~~h-~~~v~~~~~s~~~~-~l~s~~~---dg~i~iw~~~ 347 (439)
. +... .+.+..+..++++. ++++.+. -+.+..+++.
T Consensus 388 ~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 388 VVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 2 2211 24566666777765 4444432 3677888876
No 372
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=35.15 E-value=1e+02 Score=20.79 Aligned_cols=47 Identities=9% Similarity=-0.094 Sum_probs=28.7
Q ss_pred EEEeecCCCcEEEEEecCCeEEEeccCCCCCCCCCCchhhhhhhhccccCcceEEEeCCCcEEEEEE
Q 013644 321 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 387 (439)
Q Consensus 321 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~v~~w~ 387 (439)
..+.+..+|.+++... ++.+ +|...+... .....+..-.||.+.+++
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~------------------~~~~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNTVGQ------------------EGDYVLILQINGQAVVYG 105 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSCCCS------------------SSCCEEEECTTSCEEEEC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCCcCC------------------CCCEEEEEcCCceEEEec
Confidence 3567778888776543 4544 787654211 011456677888888885
No 373
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.69 E-value=1.1e+02 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=13.4
Q ss_pred EEEEccCCCEEEEecCCeEEEEEcc
Q 013644 220 GLAYSNTSELLISYNDELVYLFEKN 244 (439)
Q Consensus 220 ~~~~~~~~~~l~~~~d~~i~i~d~~ 244 (439)
.+.+..+|.+++...++.+ +|...
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEeCCCcEEEECCCCCE-EEECC
Confidence 4566667776665444443 56543
No 374
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=30.77 E-value=2.5e+02 Score=23.96 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=17.6
Q ss_pred eeEEEeecCCC-CcEEEEeecCceEEEEe
Q 013644 159 RLNAIVIDPRN-PNYFAVGGSDEYARVYD 186 (439)
Q Consensus 159 ~v~~~~~~~~~-~~~l~~~~~dg~i~i~d 186 (439)
.|.++++.|.+ +..+.+++..+.|...+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence 57889998743 35566666666555443
No 375
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=29.50 E-value=1.4e+02 Score=26.83 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=37.1
Q ss_pred ceEEEeCCCCeEEEEec-CCCc-------eeEeecc--cccceEEEeecCCCcEEEEEecCCeEEE
Q 013644 288 EYVMSGSDCGHLFIWKK-KGGK-------LVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 288 ~~l~~~~~dg~i~iwd~-~~~~-------~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
..++.|+.+|.|.-.-+ ..+. .+..+.- ...+|..|.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 35778899998744332 2211 2233332 3468999999999999999998887765
No 376
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=29.28 E-value=2.8e+02 Score=24.04 Aligned_cols=260 Identities=7% Similarity=-0.029 Sum_probs=123.0
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCce-----------eeeEEecCCCCceEEEEEccCCCcEEEEeCCCCc
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGR-----------MDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 127 (439)
.|..++. ...+.+.-..||.|..|-...... .....+. ....|..|+.... ..++...||.
T Consensus 76 ~v~~va~----G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~---hs~al~~~G~ 147 (423)
T 3mvd_K 76 DAVDISA----GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDS---HSACLLEDGR 147 (423)
T ss_dssp SEEEEEE----CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSS---EEEEEETTSC
T ss_pred CceEEee----CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcC---eEEEEeCCCe
Confidence 4544444 455666667889999996543211 0111111 2345666665443 2335567899
Q ss_pred EEEEEc--cCCCcee------eEEeeccCCCCCCCCceeeeEEEeecCCCCcEEEEeecCceEEEEeCcCCcccCCCCCC
Q 013644 128 VQHFDL--RSDSATR------LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 199 (439)
Q Consensus 128 i~iwd~--~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 199 (439)
|+.|-. ...-.+. ........ ....|..++... ...++-..+|.|+.|-....-.+......
T Consensus 148 v~~wG~~~n~~GqlG~~~~~~~~~p~~~~-------~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~ 217 (423)
T 3mvd_K 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDLM-------EGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSER 217 (423)
T ss_dssp EEEEECEECSSSEEESBTTBCEEEEEESS-------TTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTT
T ss_pred EEEEeCCCCCCCCcCcCCCCCCceeeEec-------CCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCccc
Confidence 999975 2211110 00000110 123466666643 45555668899999975543222211100
Q ss_pred --------CCcccccccccccCCCccEEEEEEccCCCEEEEecCCeEEEEEccCCCCCCCCCCCcccccccccceeEeCC
Q 013644 200 --------TPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH 271 (439)
Q Consensus 200 --------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (439)
.......+..+.......|..++......+++...++.++.|-............. ......+....
T Consensus 218 ~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~---~~~~~~p~~~~-- 292 (423)
T 3mvd_K 218 SISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKG---KEFALTPIKTE-- 292 (423)
T ss_dssp TTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTT---CSEEEEEEEEC--
T ss_pred ccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCC---CceeeeeEEcC--
Confidence 00011122222222334566665543333333346889999976543211110000 00000011111
Q ss_pred CCcceeeeEEeeCCCCceEEEeCCCCeEEEEecCCC-c-----------eeEeecccccceEEEeecCCCcEEEEEecCC
Q 013644 272 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-K-----------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK 339 (439)
Q Consensus 272 ~~~~~v~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~-----------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 339 (439)
. ..|..+++ ...+.+.-..+|.|+.|-.... + ....+..-...|..|+..... .+.-..||
T Consensus 293 ~--~~v~~ia~---G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~h--s~alt~~G 365 (423)
T 3mvd_K 293 L--KDIRHIAG---GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVC--SYAVTIDG 365 (423)
T ss_dssp C--CSEEEEEE---CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTE--EEEEETTS
T ss_pred C--CCeEEEEc---ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCe--EEEEcCCC
Confidence 1 12555552 3455555567899999964321 0 111222222367777765443 33336799
Q ss_pred eEEEeccCC
Q 013644 340 TVKLWAPMP 348 (439)
Q Consensus 340 ~i~iw~~~~ 348 (439)
.|..|-...
T Consensus 366 ~v~~wG~n~ 374 (423)
T 3mvd_K 366 KLYSWGSGV 374 (423)
T ss_dssp CEEEEECCT
T ss_pred CEEEECCCC
Confidence 999998644
No 377
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=28.49 E-value=4e+02 Score=25.58 Aligned_cols=161 Identities=15% Similarity=0.124 Sum_probs=72.8
Q ss_pred cccceEEEEECCCC-CEEEEecCCCeEEEEeCCCCcceeeeec-------C----CcccEEEEEEeecCCCcEEEEecC-
Q 013644 13 HKGCVNAVEFNSTG-DFLVSGSDDKLVIFWDWKDRREKFSYLS-------G----HLDNIFQTRIMPFTDDRKIITSSA- 79 (439)
Q Consensus 13 h~~~I~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~----h~~~v~~~~~~~~~~~~~l~s~~~- 79 (439)
-.+.|.+|+++|.+ ..+..+...|.|.... +.++.-..... + ....+.++++.|...+..++..+.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 35789999999965 4555555555544333 22221111111 0 224588999987322333343321
Q ss_pred ---CCcEEEEEcccCceeee-EEecCC-----CCc--eEEEEEccCCCcEEEEeCCCCcEEEEEccCCCceeeEEeeccC
Q 013644 80 ---DGQVRLGQIFEDGRMDT-KRLGKH-----QGR--VYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148 (439)
Q Consensus 80 ---dg~i~iw~~~~~~~~~~-~~~~~~-----~~~--v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 148 (439)
.....||.-..+...-. ..+... .+. ...++++|..+..+++++..+.|. .....++.-..+. ...
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~--~~~ 174 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMN--QLP 174 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECT--TSC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccc--cCc
Confidence 11234554433322111 111100 111 146888886544555565544332 1222222221111 011
Q ss_pred CCCCCCCceeeeEEEeecCCCCcEEEEeecCc
Q 013644 149 ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE 180 (439)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 180 (439)
.. ......+..++++|.++..++++..++
T Consensus 175 ~~---~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 175 DS---STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CC---SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cc---CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 00 001134678889887655566665554
No 378
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=27.34 E-value=2.2e+02 Score=26.04 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=40.6
Q ss_pred ceEEEEEccCCCc-EEEEeCCCCcEEEEEccCCCce-eeEEeeccCCCCCCCCceeeeE-EEeecCCCCcEEEEeecCce
Q 013644 105 RVYKLAVEPGSPY-IIYSCGEDGFVQHFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLN-AIVIDPRNPNYFAVGGSDEY 181 (439)
Q Consensus 105 ~v~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~ 181 (439)
.+++|+....+.+ +++.|+.+|.|.-..+...... ..+......+ ...+|. .|.+++++ ..|++++..+.
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~------~~~pv~~~l~~~~~~-~~Lyv~s~~~V 473 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFK------DGSPILRDMAFSINQ-LYLYVMSERQV 473 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCT------TCCCCCSCCEECTTS-SEEEEECSSEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeec------CCCccccceEEccCC-CeEEEEecccc
Confidence 3556665543333 5667888998876666543221 1222211111 123464 78888876 67777777655
Q ss_pred EEE
Q 013644 182 ARV 184 (439)
Q Consensus 182 i~i 184 (439)
+++
T Consensus 474 ~kv 476 (539)
T 3al9_A 474 TRV 476 (539)
T ss_dssp EEE
T ss_pred cee
Confidence 544
No 379
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=27.13 E-value=2.2e+02 Score=26.05 Aligned_cols=70 Identities=9% Similarity=0.139 Sum_probs=41.0
Q ss_pred cEEEEEEeecCCCcEEEEecCCCcEEEEEcccCc----eeeeEEecCCCCceE-EEEEccCCCcEEEEeCCCCcEE
Q 013644 59 NIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDG----RMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCGEDGFVQ 129 (439)
Q Consensus 59 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~~dg~i~ 129 (439)
.+++++.....+...++.|..+|.|.-..+.... ......+.....+|. .|.+++++.+ |++++..+.++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~-Lyv~s~~~V~k 475 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLY-LYVMSERQVTR 475 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSE-EEEECSSEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCe-EEEEeccccce
Confidence 4566666553344567788899988765554321 122222333346775 8899998874 55666554333
No 380
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=26.55 E-value=1.9e+02 Score=27.33 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=36.9
Q ss_pred ceEEEeCCCCeEE-EEecCCCc-------eeEeec--ccccceEEEeecCCCcEEEEEecCCeEEE
Q 013644 288 EYVMSGSDCGHLF-IWKKKGGK-------LVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 288 ~~l~~~~~dg~i~-iwd~~~~~-------~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
..++.|+.+|.|. +.....+. .+..+. ....+|..|.++++.+.|..++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 3577889999874 33222211 222222 24568999999999999999998887765
No 381
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.54 E-value=1.7e+02 Score=19.60 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=11.8
Q ss_pred eEEEeCCCcEEEEEE
Q 013644 373 SRITLTPDVIMHVLR 387 (439)
Q Consensus 373 ~~~~~s~dg~v~~w~ 387 (439)
..+..-.||.+.+++
T Consensus 87 ~~l~Lq~dGNlvly~ 101 (111)
T 3mez_A 87 YAATLGPDQHVTIYG 101 (111)
T ss_dssp CEEEECTTSCEEEEC
T ss_pred EEEEECCCCeEEEec
Confidence 567778889888885
No 382
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.87 E-value=2.5e+02 Score=25.99 Aligned_cols=56 Identities=4% Similarity=-0.022 Sum_probs=37.2
Q ss_pred ceEEEeCCCCeEEEE-ecCCC----c-eeEeec--ccccceEEEeecCCCcEEEEEecCCeEEE
Q 013644 288 EYVMSGSDCGHLFIW-KKKGG----K-LVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKL 343 (439)
Q Consensus 288 ~~l~~~~~dg~i~iw-d~~~~----~-~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 343 (439)
..++.|+.+|.|.-. ....+ . .+..+. ....+|..|.++++...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467788899987533 32222 1 122232 23568999999999888888888777666
Done!