BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013646
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 212/403 (52%), Gaps = 14/403 (3%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88
+++ LY+ GS +E G TH+L+R+AF+ST + + +E +GGN Q ++SRE
Sbjct: 27 SALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSREN 86
Query: 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIH 148
+ Y V +M++L+ + VR P + E+ EQ + EI EV P+ +L E +H
Sbjct: 87 LMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLH 146
Query: 149 SAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL 207
+A YSG L +PL+ P I ++ L ++ + YT V A GV H++ + +
Sbjct: 147 TAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKY 206
Query: 208 LSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTHFVLAFE-LPGGWHKDKDAMT 260
L D S HP K + YTGG+ C + G+ +L H + FE LP D
Sbjct: 207 LGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFHIQIGFEGLP---IDHPDIYA 262
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320
L LQ LL MYSRLY VLN++ V++ AF++ Y+ SG+FGI +
Sbjct: 263 LATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSC 322
Query: 321 GSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQ 378
+A+++ A+++ + + + + ++ RAK KS++LMNLES++V ED+GRQ
Sbjct: 323 IPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQ 382
Query: 379 VLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 421
VL +G + PV + +E + DI+ VA+ + + + A G
Sbjct: 383 VLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNG 425
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 210/421 (49%), Gaps = 14/421 (3%)
Query: 15 VSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 69
++KLP + +SP + I +++ GS YE+ + GT HLL + +T+ S RI
Sbjct: 28 ITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFRI 87
Query: 70 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 129
R +EA+GG++ ++RE+M Y + L+ +V ++E L++ P F WEV + ++K
Sbjct: 88 TRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLK 147
Query: 130 SEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 189
+ + +PQ +LE +H+A Y ALANPL P+ I ++ S L FV N+T RM
Sbjct: 148 VDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMA 207
Query: 190 LAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELP 249
L GV+H L VAE L ++ S K+ Y GG+ R Q +G L H + E
Sbjct: 208 LVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQ--NGHSLVHAAVVTE-- 262
Query: 250 GGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYN 309
G +A +VLQ +L + S+LY+ V Q SAF+ Y+
Sbjct: 263 GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYS 319
Query: 310 HSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM 369
SG+FG + + + I A +L A G V + + +AK K+ LM++E+
Sbjct: 320 DSGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMSVETAQ 378
Query: 370 VVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSY 429
+ +IG + L G + ++ VT+ D+ + A+K +S +MA+ GD+ + P
Sbjct: 379 GLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFL 438
Query: 430 D 430
D
Sbjct: 439 D 439
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 211/423 (49%), Gaps = 18/423 (4%)
Query: 15 VSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 69
++KLP + YSP ++I +++ GS YE+ + GT+HLL + +T+ S +I
Sbjct: 9 ITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGASSFKI 68
Query: 70 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 129
R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV + ++K
Sbjct: 69 TRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLK 128
Query: 130 SEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 189
+ + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T RM
Sbjct: 129 IDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMA 188
Query: 190 LAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELP 249
L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H + E
Sbjct: 189 LVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAIVAESA 245
Query: 250 --GGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNI 307
GG +A +VLQ +L S LY+ V Q SAF+
Sbjct: 246 AIGG----AEANAFSVLQHVLGANPHVKRGLNAT---SSLYQAVAKGVHQPFDVSAFNAS 298
Query: 308 YNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 367
Y+ SG+FG + + + + I A ++ ++A G V + AK K+ LM++ES
Sbjct: 299 YSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYLMSVES 357
Query: 368 RMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVP 427
E++G Q L G P L+ ++ V D+ A+K +S +MA+ G++ + P
Sbjct: 358 SEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGNLGHTP 417
Query: 428 SYD 430
D
Sbjct: 418 FVD 420
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 212/424 (50%), Gaps = 20/424 (4%)
Query: 15 VSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 69
++KLP + YSP ++I +++ GS YE+ + GT+HLL + +T+ S +I
Sbjct: 9 ITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGASSFKI 68
Query: 70 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 129
R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV + ++K
Sbjct: 69 TRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLK 128
Query: 130 SEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 189
+ + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T RM
Sbjct: 129 IDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMA 188
Query: 190 LAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELP 249
L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H + E
Sbjct: 189 LVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAIVAESA 245
Query: 250 --GGWHKDKDAMTLTVLQMLLXXX-XXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSN 306
GG +A +VLQ +L +Y + + V N F SAF+
Sbjct: 246 AIGG----AEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVHNPF----DVSAFNA 297
Query: 307 IYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE 366
Y+ SG+FG + + + + I A ++ ++A G V + AK K+ LM++E
Sbjct: 298 SYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYLMSVE 356
Query: 367 SRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINV 426
S E++G Q L G P L+ ++ V D+ A+K +S +MA+ G++ +
Sbjct: 357 SSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGNLGHT 416
Query: 427 PSYD 430
P D
Sbjct: 417 PFVD 420
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 199/406 (49%), Gaps = 9/406 (2%)
Query: 25 YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84
Y+P + I L++ GS YE+ + GT+HLL + +T+ S +I R +EA+GG + ++
Sbjct: 55 YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 114
Query: 85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLL 144
+RE M Y+ + L+ V ++E L++ P F WEV +++ + + NPQ+ ++
Sbjct: 115 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI 174
Query: 145 EAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVA 204
E +H+A Y ALAN L P+ I ++ L ++V ++T RM L GV H L VA
Sbjct: 175 ENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVA 234
Query: 205 EPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVL 264
E L+ + K+ Y GG+ R Q +GD L H L E + +A +VL
Sbjct: 235 EQFLNIRGGLG-LSGAKAKYHGGEIREQ--NGDSLVHAALVAESAAIGSAEANA--FSVL 289
Query: 265 QMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 324
Q +L S LY+ V Q SAF+ Y+ SG+FG + +
Sbjct: 290 QHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS 346
Query: 325 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 384
I A ++ ++A G + + AK K+ LM++ES +++G Q L G
Sbjct: 347 AGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGS 405
Query: 385 RKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD 430
P L+ ++ V D+ + A+K +S +MA+ G++ + P D
Sbjct: 406 YTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFID 451
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 199/406 (49%), Gaps = 9/406 (2%)
Query: 25 YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84
Y+P + I L++ GS YE+ + GT+HLL + +T+ S +I R +EA+GG + ++
Sbjct: 25 YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 84
Query: 85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLL 144
+RE M Y+ + L+ V ++E L++ P F WEV +++ + + NPQ+ ++
Sbjct: 85 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI 144
Query: 145 EAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVA 204
E +H+A Y ALAN L P+ I ++ L ++V ++T RM L GV H L VA
Sbjct: 145 ENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVA 204
Query: 205 EPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVL 264
E L+ + K+ Y GG+ R Q +GD L H L E + +A +VL
Sbjct: 205 EQFLNIRGGL-GLSGAKAKYHGGEIREQ--NGDSLVHAALVAESAAIGSAEANA--FSVL 259
Query: 265 QMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 324
Q +L S LY+ V Q SAF+ Y+ SG+FG + +
Sbjct: 260 QHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS 316
Query: 325 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 384
I A ++ ++A G + + AK K+ LM++ES +++G Q L G
Sbjct: 317 AGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGS 375
Query: 385 RKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD 430
P L+ ++ V D+ + A+K +S +MA+ G++ + P D
Sbjct: 376 YTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFID 421
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 198/406 (48%), Gaps = 9/406 (2%)
Query: 25 YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84
Y+P + I L++ GS YE+ + GT+HLL + +T+ S +I R +EA+GG + ++
Sbjct: 41 YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 100
Query: 85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLL 144
+RE M Y+ + L+ V ++E L++ P F WEV +++ + + NPQ+ ++
Sbjct: 101 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI 160
Query: 145 EAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVA 204
E +H+A Y ALAN L P+ I ++ L ++V ++T RM L GV H L VA
Sbjct: 161 ENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVA 220
Query: 205 EPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVL 264
E L+ + K+ Y GG+ R Q +GD L H L E +A +VL
Sbjct: 221 EQFLNIRGGLG-LSGAKAKYHGGEIREQ--NGDSLVHAALVAE--SAAIGSAEANAFSVL 275
Query: 265 QMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 324
Q +L S LY+ V Q SAF+ Y+ SG+FG + +
Sbjct: 276 QHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS 332
Query: 325 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 384
I A ++ ++A G + + AK K+ LM++ES +++G Q L G
Sbjct: 333 AGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGS 391
Query: 385 RKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD 430
P L+ ++ V D+ + A+K +S +MA+ G++ + P D
Sbjct: 392 YTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFID 437
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 205/427 (48%), Gaps = 39/427 (9%)
Query: 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 86
P ++ +++ GS YES + G + LE +AF+ T+NR + +EVE++G ++ A +SR
Sbjct: 33 PTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQNALEKEVESMGAHLNAYSSR 92
Query: 87 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEA 146
E Y AL VP+ VELL D V+N D ++ ++ + E+ E + + ++
Sbjct: 93 EHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERDVIVRELQENDTSMREVVFNY 152
Query: 147 IHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAAS-GVEHDQLVSVA 204
+H+ + G LA + P I +L+ L E+++ +YT PRMVLAA+ GVEH QL+ +A
Sbjct: 153 LHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAGGVEHQQLLELA 212
Query: 205 EPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMT 260
+ +P + + K +TG R + D G L H +A E PG H D
Sbjct: 213 QKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHRED-GLPLAHVAIAVEGPGWAHPD----- 266
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYR------------RVLNEFPQVQSFSAFSNIY 308
L LQ+ Y R Y V N+ QSF FS Y
Sbjct: 267 LVALQV----------ANAIIGHYDRTYGGGLHSSSPLASIAVTNKL--CQSFQTFSICY 314
Query: 309 NHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 368
+ +G+FG + + + + + + T + + ++ R K ++A++ +L+
Sbjct: 315 SETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCT--SISESEVLRGKNFLRNALVSHLDGT 372
Query: 369 MVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMASYGDVINVP 427
V EDIGR++LTYG R P+E + + + V A+ + V K + +A G + +P
Sbjct: 373 TPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCSKYIYDQCPAVAGPGPIEQLP 432
Query: 428 SYDAVSS 434
Y+ + S
Sbjct: 433 DYNRIRS 439
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 193/415 (46%), Gaps = 15/415 (3%)
Query: 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 86
P ++ +++ GS YES + G + +E +AF+ T+NR + +EVE++G ++ A ++R
Sbjct: 33 PTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTR 92
Query: 87 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEA 146
E Y AL +P+ VELL D V+N D ++ ++ + E+ E + + ++
Sbjct: 93 EHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNY 152
Query: 147 IHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 204
+H+ + G LA + P + +L+ L E+++ +Y PRMVLAA+G +EH QL+ +A
Sbjct: 153 LHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLA 212
Query: 205 EPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMT 260
+ S L + + ++ +TG C + G L H +A E PG H D A
Sbjct: 213 QKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLAHVAIAVEGPGWAHPDNVA-- 269
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320
LQ+ S + QSF F+ Y +G+ G
Sbjct: 270 ---LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVC 326
Query: 321 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVL 380
+ + + + + + T +V R K ++A++ +L+ V EDIGR +L
Sbjct: 327 DHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNALVSHLDGTTPVCEDIGRSLL 384
Query: 381 TYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMASYGDVINVPSYDAVSS 434
TYG R P+ + + V A+ + V K +A +G V +P Y+ + S
Sbjct: 385 TYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPVEQLPDYNRIRS 439
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 193/415 (46%), Gaps = 15/415 (3%)
Query: 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 86
P ++ +++ GS YES + G + +E +AF+ T+NR + +EVE++G ++ A ++R
Sbjct: 33 PTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTR 92
Query: 87 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEA 146
E Y AL +P+ VELL D V+N D ++ ++ + E+ E + + ++
Sbjct: 93 EHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNY 152
Query: 147 IHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 204
+H+ + G LA + P + +L+ L E+++ +Y PRMVLAA+G +EH QL+ +A
Sbjct: 153 LHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLA 212
Query: 205 EPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMT 260
+ S L + + ++ +TG C + G L H +A E PG H D A
Sbjct: 213 QKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLAHVAIAVEGPGWAHPDNVA-- 269
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320
LQ+ S + QSF F+ Y +G+ G
Sbjct: 270 ---LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVC 326
Query: 321 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVL 380
+ + + + + + T +V R K ++A++ +L+ V EDIGR +L
Sbjct: 327 DHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNALVSHLDGTTPVCEDIGRSLL 384
Query: 381 TYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMASYGDVINVPSYDAVSS 434
TYG R P+ + + V A+ + V K +A +G + +P Y+ + S
Sbjct: 385 TYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRS 439
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 193/415 (46%), Gaps = 15/415 (3%)
Query: 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 86
P ++ +++ GS YES + G + +E +AF+ T+NR + +EVE++G ++ A ++R
Sbjct: 67 PTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTR 126
Query: 87 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEA 146
E Y AL +P+ VELL D V+N D ++ ++ + E+ E + + ++
Sbjct: 127 EHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNY 186
Query: 147 IHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 204
+H+ + G LA + P + +L+ L E+++ +Y PRMVLAA+G +EH QL+ +A
Sbjct: 187 LHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLA 246
Query: 205 EPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMT 260
+ S L + + ++ +TG C + G L H +A E PG H D A
Sbjct: 247 QKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLAHVAIAVEGPGWAHPDNVA-- 303
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320
LQ+ S + QSF F+ Y +G+ G
Sbjct: 304 ---LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVC 360
Query: 321 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVL 380
+ + + + + + T +V R K ++A++ +L+ V EDIGR +L
Sbjct: 361 DHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNALVSHLDGTTPVCEDIGRSLL 418
Query: 381 TYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMASYGDVINVPSYDAVSS 434
TYG R P+ + + V A+ + V K +A +G + +P Y+ + S
Sbjct: 419 TYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRS 473
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 192/415 (46%), Gaps = 15/415 (3%)
Query: 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 86
P ++ +++G GS YE+ + G + +E +AF+ T+ R +EVE++G + SR
Sbjct: 33 PTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFEKEVESMGAHFNGYTSR 92
Query: 87 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEA 146
EQ + AL +P++VELL D V+N + ++ ++ + E+ E+ N+ ++ +
Sbjct: 93 EQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELKEMDNDMTNVTFDY 152
Query: 147 IHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAAS-GVEHDQLVSVA 204
+H+ + G ALA + I L L ++ ++ PRMVLAA+ G+ H +LV A
Sbjct: 153 LHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKELVDAA 212
Query: 205 EPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMT 260
S + + + P+ +TG + R + D + H LA E P GW D D +
Sbjct: 213 RQHFSGVSFTYKEDAVPILPRCRFTGSEIRAR-DDALPVAHVALAVEGP-GW-ADPDNVV 269
Query: 261 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320
L V ++ + SRL + E SF F+ Y+ +G+FG
Sbjct: 270 LHVANAII--GRYDRTFGGGKHLSSRLAALAV-EHKLCHSFQTFNTSYSDTGLFGFHFVA 326
Query: 321 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVL 380
+ + A E + + T +V+ RAK +SA++ L+ V E IG +L
Sbjct: 327 DPLSIDDMMFCAQGEWMRLCTSTTESEVK--RAKNHLRSAMVAQLDGTTPVCETIGSHLL 384
Query: 381 TYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMASYGDVINVPSYDAVSS 434
YG R +E + + V A+ + V K + +A+ G + + Y+ + S
Sbjct: 385 NYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAAVGPIEQLLDYNRIRS 439
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 196/420 (46%), Gaps = 19/420 (4%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88
A++ ++V GS E+ + GT H LE +AF+ T+NR I E+E IG ++ A SRE
Sbjct: 29 ATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSREN 88
Query: 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIH 148
Y +L+ +P+ V++L D + V + + + + E EV ++ + +H
Sbjct: 89 TVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLH 148
Query: 149 SAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206
Y L +L P I + T L++++ +NY G RMVLA +G V+H++LV A+
Sbjct: 149 EITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQK 208
Query: 207 LLSDLPSIH-------PREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAM 259
+P PR P V+ G+ R ++ TH +A E G D
Sbjct: 209 YFGHVPKSESPVPLGSPR-GPLPVFCRGE-RFIKENTLPTTHIAIALE--GVSWSAPDYF 264
Query: 260 TLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 319
Q ++ S L S+ +FS Y SG++G+
Sbjct: 265 VALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIV 322
Query: 320 TGSD--FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR 377
T S+ V ++ +E + + G++ +++RAK K+A+L++L+ + EDIGR
Sbjct: 323 TDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGR 381
Query: 378 QVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLLSSPLTMASYGDVINVPSYDAVSSKF 436
QV+T G+R E + V+ +T DI A +L + P++M + G+ VP+ + K
Sbjct: 382 QVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKL 441
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 196/420 (46%), Gaps = 19/420 (4%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88
A++ ++V GS E+ + GT H L+ +AF+ T+NR I E+E IG ++ A SRE
Sbjct: 29 ATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQNRPQQGIELEIENIGSHLNAYTSREN 88
Query: 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIH 148
Y +L+ +P+ V++L D + V + + + + E EV ++ + +H
Sbjct: 89 TVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLH 148
Query: 149 SAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206
Y L +L P I + T L++++ +NY G RMVLA +G V+H++LV A+
Sbjct: 149 EITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQK 208
Query: 207 LLSDLPSIH-------PREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAM 259
+P PR P V+ G+ R ++ TH +A E G D
Sbjct: 209 YFGHVPKSESPVPLGSPR-GPLPVFCRGE-RFIKENTLPTTHIAIALE--GVSWSAPDYF 264
Query: 260 TLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 319
Q ++ S L S+ +FS Y SG++G+
Sbjct: 265 VALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIV 322
Query: 320 TGSD--FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR 377
T S+ V ++ +E + + G++ +++RAK K+A+L++L+ + EDIGR
Sbjct: 323 TDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGR 381
Query: 378 QVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLLSSPLTMASYGDVINVPSYDAVSSKF 436
QV+T G+R E + V+ +T DI A +L + P++M + G+ VP+ + K
Sbjct: 382 QVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKL 441
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 175/386 (45%), Gaps = 18/386 (4%)
Query: 30 SISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQM 89
SI ++VG GS YES G +H LE M F+ T RS I ++IGG V A S+E
Sbjct: 25 SIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYT 84
Query: 90 GYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHS 149
Y L + + ++ L D + F E+ ++ V EI V + P ++ + + S
Sbjct: 85 CYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSS 144
Query: 150 AGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL 208
A Y +L P+L +N N +L ++ YTG +V++ +G HD+L+ +
Sbjct: 145 ATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVHDELIDKIKETF 204
Query: 209 SDL-PSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQML 267
S + P+ + + K ++ R + H L + PG DKD L +L +
Sbjct: 205 SQVKPTTYNYQGEKPMFLPN--RIVRKKETEQAHLCLGY--PGLPIGDKDVYALVLLNNV 260
Query: 268 LXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSK 327
L M SRL++ + + S ++ + + SGM I TG D +
Sbjct: 261 L-----------GGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDD 309
Query: 328 AIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP 387
+ + +E S + + +L+ K+ K +++++LES G+ L + +
Sbjct: 310 LV-YSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRS 368
Query: 388 VEHFLKTVEGVTAKDIASVAQKLLSS 413
++ ++ + V +D++ +A+ LLS+
Sbjct: 369 LDEMIEQINAVQKQDVSRLAKILLSA 394
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 9/201 (4%)
Query: 26 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 85
+ ++++++ V GS Y + G HLL R F++T RS L++VRE E +GG +++
Sbjct: 10 TKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLD 67
Query: 86 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ-LTKVKSEISEVSNNPQSLLL 144
RE + LK +P V L D + F E+ E L + + + P
Sbjct: 68 REYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAE 127
Query: 145 EAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV 203
+ +++ + L NPLL + R++ +++F + YT + ++ VE D V
Sbjct: 128 DQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENVVEADLKRFV 185
Query: 204 AEPLLSDLP---SIHPREEPK 221
E LLS LP S+ + EPK
Sbjct: 186 DESLLSTLPAGKSLVSKSEPK 206
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 167/402 (41%), Gaps = 31/402 (7%)
Query: 33 LYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYS 92
++ GS+ E+ + G H LE M F+ T++ + V A+GG A +R+ Y
Sbjct: 33 VWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYY 92
Query: 93 FDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAG 151
+ + +++ L D + N V D +++ + E + P+S EA+ +A
Sbjct: 93 QQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAAS 152
Query: 152 YSGALANPLLAP----ESAINRLNSTLLEEFVAENYTGPR--MVLAASGVEHDQLVSVAE 205
Y +A+P P + I + + + ++ Y GP V+ VEH+ + +AE
Sbjct: 153 Y---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY-GPNNATVVVVGDVEHEAVFRLAE 208
Query: 206 PLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPG--GWHKDKDAMTL 261
L + R++ G R + +L + LA+ +P K +DA L
Sbjct: 209 QTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYAL 268
Query: 262 TVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG--T 319
+L +L M +L R + + + S G+F ++G +
Sbjct: 269 EILAAVL-------DGYDGARMTRQLVRGNKHAVSAGAGYDSLSR--GQQGLFILEGVPS 319
Query: 320 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR-Q 378
G DL A ++ +A G V + +L R K + + +S M + IG +
Sbjct: 320 KGVTIAQLETDLRA-QVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLE 377
Query: 379 VLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMAS 419
VL R + F + + VTA ++ + A +LL+ LT+A+
Sbjct: 378 VLGLSWRDD-DRFYQQLRSVTAAEVKAAAARLLTDDTLTVAN 418
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 167/402 (41%), Gaps = 31/402 (7%)
Query: 33 LYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYS 92
++ GS+ E+ + G H LE M F+ T++ + V A+GG A +R+ Y
Sbjct: 33 VWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYY 92
Query: 93 FDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAG 151
+ + +++ L D + N V D +++ + E + P+S EA+ +A
Sbjct: 93 QQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAAS 152
Query: 152 YSGALANPLLAP----ESAINRLNSTLLEEFVAENYTGPR--MVLAASGVEHDQLVSVAE 205
Y +A+P P + I + + + ++ Y GP V+ VEH+ + +AE
Sbjct: 153 Y---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY-GPNNATVVVVGDVEHEAVFRLAE 208
Query: 206 PLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPG--GWHKDKDAMTL 261
L + R++ G R + +L + LA+ +P K +DA L
Sbjct: 209 QTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYAL 268
Query: 262 TVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG--T 319
+L +L M +L R + + + S G+F ++G +
Sbjct: 269 EILAAVL-------DGYDGARMTRQLVRGNKHAVSAGAGYDSLSR--GQQGLFILEGVPS 319
Query: 320 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR-Q 378
G DL A ++ +A G V + +L R K + + +S M + IG +
Sbjct: 320 KGVTIAQLETDLRA-QVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLE 377
Query: 379 VLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMAS 419
VL R + F + + VTA ++ + A +LL+ LT+A+
Sbjct: 378 VLGLSWRDD-DRFYQQLRSVTAAEVKAAAARLLTDDTLTVAN 418
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 182/441 (41%), Gaps = 68/441 (15%)
Query: 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNV 80
+H + AS+ + G G+ E+P + G ++L + + F S N + +E A+ N+
Sbjct: 15 EHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--VAAKEGLALSSNI 71
Query: 81 QASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLTKVKSEISEV---- 135
SR+ Y +L + ++ L ++ L N + TK KS + +V
Sbjct: 72 ----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK-KSVLKQVQDFE 126
Query: 136 SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 194
N+ + +LE +HS + L+ P ++ L LE F ++ V+ +G
Sbjct: 127 DNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTG 186
Query: 195 -VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS-----------GDQL-- 239
++H+ LV S+ LS P + K+ + G + R + D+ G+ +
Sbjct: 187 NIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNS 246
Query: 240 -THFV--LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFP 296
+FV LA ++ G ++ + A L +++L + E+
Sbjct: 247 PNYFVAKLAAQIFGSYNAFEPASRLQGIKLL----------------------DNIQEYQ 284
Query: 297 QVQSFSAFSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELISVATPGEVDQVQLD 351
+F+ FS Y SG++G T + D + + R ISV +++
Sbjct: 285 LCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT------DTEVE 338
Query: 352 RAKQSTKSAILMNLESRMVVSED--IGRQVLTYGERKPVEHFLKTVEGVTAKDIASVA-Q 408
RAK K + ES V++ +G +VL G + + K ++ +T KD+ + A +
Sbjct: 339 RAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGK 398
Query: 409 KLLSSPLTMASYGDVINVPSY 429
+L + +A G + + Y
Sbjct: 399 RLWDQDIAIAGTGQIEGLLDY 419
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 93/434 (21%), Positives = 179/434 (41%), Gaps = 68/434 (15%)
Query: 28 VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 87
AS+ + G G+ E+P + G ++L + + F S N + +E A+ N+ SR+
Sbjct: 21 TASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--VAAKEGLALSSNI----SRD 73
Query: 88 QMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLTKVKSEISEV----SNNPQSL 142
Y +L + ++ L ++ L N + TK KS + +V N+ +
Sbjct: 74 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK-KSVLKQVQDFEDNDHPNR 132
Query: 143 LLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQL 200
+LE +HS + L+ P ++ L LE F ++ V+ +G ++H+ L
Sbjct: 133 VLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDL 192
Query: 201 V-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS-----------GDQL---THFV-- 243
V S+ LS P + K+ + G + R + D+ G+ + +FV
Sbjct: 193 VNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAK 252
Query: 244 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 303
LA ++ G ++ + A L +++L + E+ +F+
Sbjct: 253 LAAQIFGSYNAFEPASRLQGIKLL----------------------DNIQEYQLCDNFNH 290
Query: 304 FSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTK 358
FS Y SG++G T + D + + R ISV +++RAK K
Sbjct: 291 FSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT------DTEVERAKSLLK 344
Query: 359 SAILMNLESRMVVSED--IGRQVLTYGERKPVEHFLKTVEGVTAKDIASVA-QKLLSSPL 415
+ ES V++ +G +VL G + + K ++ +T KD+ + A ++L +
Sbjct: 345 LQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDI 404
Query: 416 TMASYGDVINVPSY 429
+A G + + Y
Sbjct: 405 AIAGTGQIEGLLDY 418
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 208 LSDLPSIHPREEPKSVY--TGGDYRC 231
SD+PSIHP EPK Y + G Y C
Sbjct: 46 CSDIPSIHPISEPKDCYLQSDGFYEC 71
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVRE-VEAIGGNVQASASRE 87
+S +L V GS+ + P G +H LE M F T+ + + G+ A S E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 131
Y FD ++ ++ +P+F + + ++ V SE
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVRE-VEAIGGNVQASASRE 87
+S +L V GS+ + P G +H L+ M F T+ + + G+ A S E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 131
Y FD ++ ++ +P+F + + ++ V SE
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 51 HLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELL 107
++ E F+ R +H+ + +G N++ S R LK Y+ E V+L
Sbjct: 56 YIFENFVFQKNRKINHIIKTSKYSTVGFNIENSYDRLMKTIKEHKLKNYIKESVKLF 112
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVRE-VEAIGGNVQASASRE 87
+S +L V GS+ + P G +H L+ M F T+ + + G+ A S E
Sbjct: 44 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 103
Query: 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 131
Y FD ++ ++ +P+F + + ++ V SE
Sbjct: 104 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 147
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVRE-VEAIGGNVQASASRE 87
+S +L V GS+ + P G +H L+ M F T+ + + G+ A S E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 131
Y FD ++ ++ +P+F + + ++ V SE
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVRE-VEAIGGNVQASASRE 87
+S +L V GS+ + P G +H L+ M F T+ + + G+ A S E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 131
Y FD ++ ++ +P+F + + ++ V SE
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 160
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVRE-VEAIGGNVQASASRE 87
+S +L V GS+ + P G +H L+ M F T+ + + G+ A S E
Sbjct: 86 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 145
Query: 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 131
Y FD ++ ++ +P+F + + ++ V SE
Sbjct: 146 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSE 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,692,839
Number of Sequences: 62578
Number of extensions: 436581
Number of successful extensions: 1130
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 33
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)