Query 013646
Match_columns 439
No_of_seqs 154 out of 1312
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0960 Mitochondrial processi 100.0 9.1E-60 2E-64 413.7 37.9 419 10-437 32-463 (467)
2 KOG2067 Mitochondrial processi 100.0 1.9E-59 4.1E-64 412.2 35.3 422 14-439 26-460 (472)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.9E-53 4.1E-58 414.0 40.7 408 7-428 12-436 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.2E-44 2.5E-49 358.5 39.4 323 16-356 3-345 (696)
5 PRK15101 protease3; Provisiona 100.0 6.4E-44 1.4E-48 379.4 37.0 392 15-424 46-463 (961)
6 PTZ00432 falcilysin; Provision 100.0 1.6E-36 3.4E-41 319.4 38.1 370 26-412 113-561 (1119)
7 KOG2583 Ubiquinol cytochrome c 100.0 2.5E-33 5.5E-38 248.1 38.2 399 14-432 24-429 (429)
8 PRK15101 protease3; Provisiona 100.0 2E-31 4.2E-36 283.9 34.8 367 21-414 537-918 (961)
9 COG1025 Ptr Secreted/periplasm 100.0 1.5E-30 3.2E-35 256.0 35.3 394 15-424 26-442 (937)
10 KOG0959 N-arginine dibasic con 100.0 1.4E-29 3E-34 253.6 35.4 403 4-422 18-445 (974)
11 COG1026 Predicted Zn-dependent 100.0 9.6E-27 2.1E-31 230.2 27.4 385 26-428 40-463 (978)
12 PF00675 Peptidase_M16: Insuli 99.9 7.3E-24 1.6E-28 175.0 15.0 142 22-163 6-148 (149)
13 KOG0961 Predicted Zn2+-depende 99.9 3.5E-22 7.5E-27 188.0 27.3 384 21-423 34-456 (1022)
14 KOG2019 Metalloendoprotease HM 99.9 7.3E-22 1.6E-26 186.1 25.7 373 38-423 80-496 (998)
15 PF05193 Peptidase_M16_C: Pept 99.9 5.9E-22 1.3E-26 169.9 17.0 175 169-357 1-184 (184)
16 COG1025 Ptr Secreted/periplasm 99.9 1.8E-18 3.9E-23 171.4 33.7 371 25-422 523-908 (937)
17 COG1026 Predicted Zn-dependent 99.9 3.9E-19 8.5E-24 176.7 28.3 377 21-422 541-957 (978)
18 PTZ00432 falcilysin; Provision 99.9 5.9E-19 1.3E-23 186.9 29.5 381 21-428 674-1108(1119)
19 KOG0959 N-arginine dibasic con 99.8 4.4E-16 9.6E-21 157.3 32.7 370 15-412 518-909 (974)
20 KOG2019 Metalloendoprotease HM 99.8 1.3E-16 2.8E-21 151.1 25.3 372 22-422 576-984 (998)
21 KOG0961 Predicted Zn2+-depende 99.4 8.2E-12 1.8E-16 118.9 19.1 329 65-412 607-970 (1022)
22 COG0612 PqqL Predicted Zn-depe 98.2 7.8E-05 1.7E-09 73.0 16.9 170 237-425 36-209 (438)
23 TIGR02110 PQQ_syn_pqqF coenzym 98.0 0.001 2.2E-08 67.7 20.9 166 237-423 19-194 (696)
24 PF08367 M16C_assoc: Peptidase 98.0 0.00015 3.3E-09 64.8 13.5 110 21-134 84-205 (248)
25 PF03410 Peptidase_M44: Protei 96.9 0.024 5.2E-07 53.4 13.4 166 29-216 20-194 (590)
26 KOG0960 Mitochondrial processi 96.9 0.032 7E-07 51.4 13.9 171 236-424 51-224 (467)
27 PF00675 Peptidase_M16: Insuli 96.8 0.13 2.7E-06 42.0 15.5 128 236-384 9-139 (149)
28 PHA03081 putative metalloprote 96.4 0.16 3.5E-06 48.1 14.5 166 29-216 20-194 (595)
29 KOG2067 Mitochondrial processi 95.9 0.1 2.2E-06 48.3 10.8 161 28-194 264-442 (472)
30 KOG2583 Ubiquinol cytochrome c 85.2 35 0.00075 32.3 14.5 169 233-423 37-210 (429)
31 PF09851 SHOCT: Short C-termin 85.0 1.8 3.8E-05 24.5 3.3 25 334-358 6-30 (31)
32 PF08367 M16C_assoc: Peptidase 75.9 58 0.0013 29.0 12.5 112 238-361 90-206 (248)
33 PF05193 Peptidase_M16_C: Pept 75.7 4.9 0.00011 33.3 4.7 97 27-128 78-184 (184)
34 cd05026 S-100Z S-100Z: S-100Z 44.0 1.3E+02 0.0027 22.0 7.7 77 322-399 2-83 (93)
35 cd05023 S-100A11 S-100A11: S-1 43.5 1.3E+02 0.0027 21.9 7.2 76 324-400 3-83 (89)
36 cd05024 S-100A10 S-100A10: A s 41.0 1.4E+02 0.0031 21.8 8.0 77 325-401 3-80 (91)
37 cd08779 Death_PIDD Death Domai 40.4 1.4E+02 0.003 21.5 6.8 77 326-410 6-85 (86)
38 PF09186 DUF1949: Domain of un 40.3 97 0.0021 19.7 6.7 46 67-112 9-54 (56)
39 KOG1374 Gamma tubulin [Cytoske 38.8 3.1E+02 0.0066 26.1 9.2 45 260-304 118-174 (448)
40 PF08756 YfkB: YfkB-like domai 32.6 88 0.0019 24.8 4.2 37 387-423 2-40 (153)
41 cd04922 ACT_AKi-HSDH-ThrA_2 AC 30.7 1.5E+02 0.0034 19.3 5.0 45 68-112 20-65 (66)
42 PF13840 ACT_7: ACT domain ; P 29.6 1.7E+02 0.0038 19.5 4.9 39 69-109 27-65 (65)
43 cd04916 ACT_AKiii-YclM-BS_2 AC 29.4 1.7E+02 0.0036 19.1 5.0 46 68-113 20-66 (66)
44 COG1761 RPB11 DNA-directed RNA 28.7 2.5E+02 0.0054 21.0 6.0 55 285-341 30-89 (99)
45 COG5023 Tubulin [Cytoskeleton] 28.6 48 0.001 31.1 2.5 87 275-370 139-245 (443)
46 COG0157 NadC Nicotinate-nucleo 27.5 1.2E+02 0.0026 27.4 4.8 41 166-206 213-254 (280)
47 cd04936 ACT_AKii-LysC-BS-like_ 27.5 1.7E+02 0.0038 18.7 4.8 43 68-111 19-61 (63)
48 PRK00994 F420-dependent methyl 26.6 1.6E+02 0.0034 26.0 5.0 43 396-438 41-85 (277)
49 PF05120 GvpG: Gas vesicle pro 26.5 2.4E+02 0.0052 20.1 5.2 30 334-363 38-67 (79)
50 cd04923 ACT_AK-LysC-DapG-like_ 25.6 1.9E+02 0.0041 18.5 4.8 44 67-111 18-61 (63)
51 PF01729 QRPTase_C: Quinolinat 24.6 62 0.0013 26.9 2.3 42 165-206 104-147 (169)
52 PF01993 MTD: methylene-5,6,7, 23.3 94 0.002 27.3 3.2 42 396-437 40-83 (276)
53 PRK09016 quinolinate phosphori 23.3 1.5E+02 0.0032 27.3 4.6 39 166-206 233-272 (296)
54 PRK06559 nicotinate-nucleotide 22.7 1.5E+02 0.0032 27.2 4.5 39 166-206 222-261 (290)
55 PRK06978 nicotinate-nucleotide 22.1 1.7E+02 0.0037 26.9 4.8 39 166-206 230-269 (294)
56 PRK08385 nicotinate-nucleotide 21.8 1.6E+02 0.0035 26.8 4.6 41 166-206 207-251 (278)
57 PRK05986 cob(I)alamin adenolsy 21.4 1.3E+02 0.0028 25.7 3.6 37 168-206 131-168 (191)
58 cd04924 ACT_AK-Arch_2 ACT doma 20.7 2.5E+02 0.0055 18.2 4.7 44 68-111 20-64 (66)
59 KOG4094 Uncharacterized conser 20.4 91 0.002 24.8 2.3 89 89-185 48-139 (178)
No 1
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-60 Score=413.70 Aligned_cols=419 Identities=30% Similarity=0.543 Sum_probs=385.7
Q ss_pred hhhheeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeee
Q 013646 10 LLYQMVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84 (439)
Q Consensus 10 ~~~~~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~ 84 (439)
|... +++|+| +++++.+++.+++|+++|+++|++++.|.+||+|||.|+|+++++...+..++++.|+.+|++|
T Consensus 32 P~t~-vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAyt 110 (467)
T KOG0960|consen 32 PETE-VTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYT 110 (467)
T ss_pred Ccce-EEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccc
Confidence 3344 899999 8888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013646 85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 163 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~ 163 (439)
+++.|.|..++.++++++++++|.|++.+..+.+.+|+++|..|+.|++....+......+.+++..| ++|++++++|+
T Consensus 111 SReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp 190 (467)
T KOG0960|consen 111 SREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGP 190 (467)
T ss_pred cccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccCh
Confidence 99999999999999999999999999999999999999999999999999988889999999999999 99999999999
Q ss_pred hhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCC---CCC-CCCcccCCceEeecCCCCC
Q 013646 164 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP---REE-PKSVYTGGDYRCQADSGDQ 238 (439)
Q Consensus 164 ~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 238 (439)
.+.|++|+.+||++|.+.+|.+.+|+++.+| ++++++.++++++||.++.... ++. +++.|.+.+++...+ ..+
T Consensus 191 ~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd-~lP 269 (467)
T KOG0960|consen 191 SENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDD-DLP 269 (467)
T ss_pred hhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCC-CCc
Confidence 9999999999999999999999999999999 9999999999999999765332 222 345578888877655 238
Q ss_pred ceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEE
Q 013646 239 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 318 (439)
Q Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~ 318 (439)
.+++.+++.+++ | ++||+.++.+.+.++|....+.+||...+ ++|-+.+-+. .++-++.++...|.++|.|++|+
T Consensus 270 ~a~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~ 344 (467)
T KOG0960|consen 270 LAHIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYF 344 (467)
T ss_pred hhheeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEE
Confidence 999999999986 4 99999999999999999877777777555 9998888764 67888888889999999999999
Q ss_pred ee-ChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q 013646 319 TT-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG 397 (439)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 397 (439)
.+ ++..++..+..+..++.++.. .+|+.|+++||++++.++.+.++...-.+..++++++.+|+..+..+..+.|++
T Consensus 345 V~~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~El~~rId~ 422 (467)
T KOG0960|consen 345 VTDNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLAELEARIDA 422 (467)
T ss_pred EecChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChHHHHHHHhh
Confidence 99 788999999999999999987 499999999999999999999999999999999999989998999999999999
Q ss_pred CCHHHHHHHHHHhhC-CCCeEEEecCCCCCCCHHHHHhhhh
Q 013646 398 VTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 437 (439)
Q Consensus 398 vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~~~~~~~~~~ 437 (439)
||.+||++++.+|+. .++.++.+||...+|+++.++..+.
T Consensus 423 vt~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~ 463 (467)
T KOG0960|consen 423 VTAKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMS 463 (467)
T ss_pred ccHHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccch
Confidence 999999999999998 8899999999999999999987664
No 2
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-59 Score=412.21 Aligned_cols=422 Identities=47% Similarity=0.722 Sum_probs=395.7
Q ss_pred eeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 14 MVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 14 ~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
++++|+| .+++.++-+.+++++++|+++|.....|++|++++|.|++|.+++..++...|+.+|+...+++++|.
T Consensus 26 kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRet 105 (472)
T KOG2067|consen 26 KVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRET 105 (472)
T ss_pred eeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhh
Confidence 4899999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 167 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l 167 (439)
+.|.+++.++.++..+++|.|.+.+|.|++++++.+|..+.-|+......|+-...+.++.++| +...+.+.+++.+.+
T Consensus 106 m~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i 185 (472)
T KOG2067|consen 106 MMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENI 185 (472)
T ss_pred hHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred ccCCHHHHHHHHHhhCCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCCCC--CCCcccCCceEeecC-----CCCCce
Q 013646 168 NRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTGGDYRCQAD-----SGDQLT 240 (439)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~ 240 (439)
..|+.+.|..|.+.+|.|.+|++..||++++++.+.++++++.||+...++. +..+|.++...+..+ .+-.-+
T Consensus 186 ~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~g~Elt 265 (472)
T KOG2067|consen 186 DKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTGGPELT 265 (472)
T ss_pred hhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccCcccee
Confidence 9999999999999999999999999999999999999999999998544433 345677776554422 122578
Q ss_pred EEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEee
Q 013646 241 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320 (439)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~ 320 (439)
++.++|.+++ ..++|..++.+|+-+||||++||+|||||||.||||.++--+..|.|+.-++...|.++|.|+|++++
T Consensus 266 Hv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~~s~ 343 (472)
T KOG2067|consen 266 HVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIYASA 343 (472)
T ss_pred eeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEeccC
Confidence 8999999997 58899999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Q 013646 321 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTA 400 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 400 (439)
+|+.+.++++.+.+++..+.. | ++++|++|||.++.+.+..++|+.--..+.++++.+..|....++++.+.|+++|+
T Consensus 344 ~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~ 421 (472)
T KOG2067|consen 344 PPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTP 421 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHHHhcCH
Confidence 999999999999999999877 5 99999999999999999999999988999999999988888999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEecCCCCCCCHHHHHhhhhcC
Q 013646 401 KDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK 439 (439)
Q Consensus 401 ~dv~~~a~~~l~~~~~~~v~g~~~~~~~~~~~~~~~~~~ 439 (439)
+||.+++.+++..+++++-.|+...+|+++-+.++++++
T Consensus 422 ~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~ 460 (472)
T KOG2067|consen 422 SDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG 460 (472)
T ss_pred HHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence 999999999999999999999999999999999998874
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.9e-53 Score=414.01 Aligned_cols=408 Identities=28% Similarity=0.414 Sum_probs=350.3
Q ss_pred chhhhhheeeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCee
Q 013646 7 PRFLLYQMVSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNV 80 (439)
Q Consensus 7 ~~~~~~~~~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~ 80 (439)
+..+..+ ..+|+| .+.+..+.+++.++|++|++.|++.+.|+|||+|||+|+|+.+++..++.+.++..|+..
T Consensus 12 ~~~~~~~-~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~ 90 (438)
T COG0612 12 PALPGLQ-VFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQL 90 (438)
T ss_pred cccccce-EEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCee
Confidence 3444445 689999 444447999999999999999999999999999999999999988889999999999999
Q ss_pred eeeecCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCC
Q 013646 81 QASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP 159 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 159 (439)
|++|+.++|.|.+++.+++++.+|+++.+++.+|.|++++|+++|..+++|++...++|...+...+...+| +|||+++
T Consensus 91 na~ts~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~ 170 (438)
T COG0612 91 NAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRP 170 (438)
T ss_pred eccccchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCC
Confidence 999999999999998899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCC-CCCCCCCC-CcccCCce-Eeec--
Q 013646 160 LLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPS-IHPREEPK-SVYTGGDY-RCQA-- 233 (439)
Q Consensus 160 ~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~-- 233 (439)
+.|+.+.|.++|.++|++||++||+|+||+++||| ++++++.++++++|+.|+. .+....+. +...+... .+..
T Consensus 171 ~~G~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (438)
T COG0612 171 ILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPE 250 (438)
T ss_pred CCCCHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCC
Confidence 99999999999999999999999999999999999 9999999999999999986 22221122 22222222 2221
Q ss_pred CCCCCceEEEEEEecCCCCCCCc-chHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcc
Q 013646 234 DSGDQLTHFVLAFELPGGWHKDK-DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG 312 (439)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~ 312 (439)
.....++++.++++++. ...+ +++++.+++.++|++ ++|+||+.+|++.|++|+++++...+.+.+
T Consensus 251 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~ 317 (438)
T COG0612 251 QPDLEQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSG 317 (438)
T ss_pred CchhhhhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccC
Confidence 12236788888888876 4444 788999999999986 559999999999999999998888888888
Q ss_pred eEEEEEeeChhhHHHHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHH
Q 013646 313 MFGIQGTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEH 390 (439)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (439)
.+.+++.+.+.+...+.+.+.+++..+.+. +.+++++++++|..+.+.+....+++...+..+......++......+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
T COG0612 318 LFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEE 397 (438)
T ss_pred CceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCccCHHH
Confidence 888888888555555555555555444442 248999999999999999999999999999988887775677789999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCCCCCC
Q 013646 391 FLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPS 428 (439)
Q Consensus 391 ~~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~ 428 (439)
+.+.|++||++||+++|++++. ++.+++++||....+.
T Consensus 398 ~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~~~~~ 436 (438)
T COG0612 398 LLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEKALKD 436 (438)
T ss_pred HHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccccccc
Confidence 9999999999999999999999 7799999999876554
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.2e-44 Score=358.46 Aligned_cols=323 Identities=17% Similarity=0.153 Sum_probs=277.3
Q ss_pred eecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHH-HHHHHHHHcCCeeeeeecCce
Q 013646 16 SKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 16 ~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~-~l~~~l~~~g~~~~~~~~~~~ 88 (439)
.+|+| .+++..|++++.++|++|+++|++++.|++||+|||+|+||++++.. ++.+.++.+|+++|++|+.++
T Consensus 3 ~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~ 82 (696)
T TIGR02110 3 ITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERT 82 (696)
T ss_pred EEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCe
Confidence 57888 67778899999999999999999999999999999999999999985 799999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 167 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l 167 (439)
|+|.+++++++++.+|+++.+++.+|.|+++++++||+++++|++...++|...+.+.+...+| +|||+++..|+.++|
T Consensus 83 T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL 162 (696)
T TIGR02110 83 TAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSL 162 (696)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCC---HHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCcccCCceEeecCCCCCceE
Q 013646 168 NRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGGDYRCQADSGDQLTH 241 (439)
Q Consensus 168 ~~i~---~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (439)
.+++ .++|++||+++|.|+||+++|+| ++++++.++++++|+.|+.+..+... .+.+......+... ..++..
T Consensus 163 ~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~q~~ 241 (696)
T TIGR02110 163 ALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGG-SEPRLW 241 (696)
T ss_pred hCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEec-CcceEE
Confidence 9876 99999999999999999999999 99999999999999999765443221 22222222222222 125666
Q ss_pred EEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCc--ceEEEEEe
Q 013646 242 FVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHS--GMFGIQGT 319 (439)
Q Consensus 242 i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~--~~~~i~~~ 319 (439)
+.+++++++ .. +..++.+++.+|+++ ++|+|+.+||+ +|++|++++++ .+.+. +.|.|++.
T Consensus 242 l~~~~p~~~--~~--d~~al~lL~~iLg~g-----------~sSrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~~ 304 (696)
T TIGR02110 242 LLFALAGLP--AT--ARDNVTLLCEFLQDE-----------APGGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEFS 304 (696)
T ss_pred EEEeecCCC--CC--ChHHHHHHHHHhCCC-----------cchHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEEE
Confidence 666666543 33 344688999999987 44999999996 89999999865 44444 48888888
Q ss_pred e---ChhhHHHHHHHHHHHHHhhhCCC-CCCHHHHHHHHHH
Q 013646 320 T---GSDFVSKAIDLAARELISVATPG-EVDQVQLDRAKQS 356 (439)
Q Consensus 320 ~---~~~~~~~~~~~~~~~~~~l~~~g-~i~~~el~~ak~~ 356 (439)
+ .+++.+++.+.+.++++++++++ .++.+|++++|+.
T Consensus 305 lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 305 ARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQR 345 (696)
T ss_pred EcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 7 35688999999999999998872 3999999999988
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=6.4e-44 Score=379.38 Aligned_cols=392 Identities=13% Similarity=0.111 Sum_probs=324.3
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCC-HHHHHHHHHHcCCeeeeeecCc
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQASASRE 87 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~-~~~l~~~l~~~g~~~~~~~~~~ 87 (439)
..+|+| .+++..+.+.+.+++++|+++||++..|+|||+|||+|+||++++ ..++.+.++.+|+++|++|+.+
T Consensus 46 ~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d 125 (961)
T PRK15101 46 AIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASY 125 (961)
T ss_pred EEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCC
Confidence 568999 678888999999999999999999999999999999999999996 5789999999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013646 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 166 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 166 (439)
+|+|.+++++++++.+|+++.+++.+|.|++++++++|+.+.+|++...++|...+.+.+...+| +|||+++..|+.++
T Consensus 126 ~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~et 205 (961)
T PRK15101 126 RTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLET 205 (961)
T ss_pred ceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999 99999999999999
Q ss_pred hccC----CHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC--CCCccc---CCceEeecCCC
Q 013646 167 INRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYT---GGDYRCQADSG 236 (439)
Q Consensus 167 l~~i----~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~ 236 (439)
|.++ +.++|++||++||.|+||+++|+| ++++++.++++++|+.|+++..+.. +.+.+. .+......+ .
T Consensus 206 l~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 284 (961)
T PRK15101 206 LSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIHYVP-A 284 (961)
T ss_pred hhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEEEEE-C
Confidence 9997 699999999999999999999999 9999999999999999987643211 112221 111222122 2
Q ss_pred CCceEEEEEEecCCCCCCC-cchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeecccc--CCcce
Q 013646 237 DQLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY--NHSGM 313 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~-~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~--~~~~~ 313 (439)
.++..+.++|+.|+ ... .+.....+++.+|+++.. +.|+..|+ ++|++|+++++.... .+.|.
T Consensus 285 ~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L~-~~gla~~v~s~~~~~~~~~~g~ 350 (961)
T PRK15101 285 QPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWLQ-KQGLAEGISAGADPMVDRNSGV 350 (961)
T ss_pred CCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHHH-HcCccceeeeccccccCCCceE
Confidence 36678888999875 222 223356788999987643 56777775 789999999886543 46789
Q ss_pred EEEEEeeChh---hHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHH-cccChHHHHHHHHHHHHhcCCCCCHH
Q 013646 314 FGIQGTTGSD---FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQVLTYGERKPVE 389 (439)
Q Consensus 314 ~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (439)
|.+++.+.++ +..++++.+.++++.++++| +++++|+++|+.+..++.. ...++.+.+..++..+. ...+....
T Consensus 351 f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 428 (961)
T PRK15101 351 FAISVSLTDKGLAQRDQVVAAIFSYLNLLREKG-IDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML-RVPVEHTL 428 (961)
T ss_pred EEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh-hCCHHHhe
Confidence 9999998874 78999999999999999998 9999999999998877644 23344445555555443 22223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 390 HFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 390 ~~~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
.....+..+++++|+++++. |. ++..+++++|..
T Consensus 429 ~~~~~~~~~~~~~i~~~~~~-l~~~n~~i~~~~~~~ 463 (961)
T PRK15101 429 DAPYIADRYDPKAIKARLAE-MTPQNARIWYISPQE 463 (961)
T ss_pred eCchhhhcCCHHHHHHHHhh-cCHhHEEEEEEeCCC
Confidence 45678889999999999877 66 889998988853
No 6
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=1.6e-36 Score=319.41 Aligned_cols=370 Identities=15% Similarity=0.131 Sum_probs=286.3
Q ss_pred CCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcC--CeeeeeecCceEEEEEEecCC-CHHH
Q 013646 26 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNVQASASREQMGYSFDALKT-YVPE 102 (439)
Q Consensus 26 ~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (439)
.+.+.+.++|++|+. +..|++|++|||+++|+++++..++...++..| +.+|++|+.|+|+|.+.+.++ ++..
T Consensus 113 ~~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~ 188 (1119)
T PTZ00432 113 GKEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYN 188 (1119)
T ss_pred cceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHH
Confidence 357889999999973 458999999999999999999999999998866 789999999999999999886 6999
Q ss_pred HHHHHHHhhhCCCCCHHHH--HH---------H--------------------HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 013646 103 MVELLIDCVRNPVFLDWEV--NE---------Q--------------------LTKVKSEISEVSNNPQSLLLEAIHSAG 151 (439)
Q Consensus 103 ~l~ll~~~l~~~~~~~~~~--~~---------~--------------------k~~~~~e~~~~~~~~~~~~~~~l~~~~ 151 (439)
+|+++.+++.+|.|+++++ .+ + +.+|.+|++...++|...+.+.+.+.+
T Consensus 189 ~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~~~~~l 268 (1119)
T PTZ00432 189 TADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSVIYQNL 268 (1119)
T ss_pred HHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 9999999999999988763 22 1 778999999999999999999999888
Q ss_pred cCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCC--------CC-CC
Q 013646 152 YSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPR--------EE-PK 221 (439)
Q Consensus 152 ~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~--------~~-~~ 221 (439)
|+|||+++..|++++|.+++.+++++||+++|.|+|++++++| ++++++.++++++|+.+|..... .. +.
T Consensus 269 f~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 348 (1119)
T PTZ00432 269 FSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKTGQLSHTAYREDADENL 348 (1119)
T ss_pred hCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 8889999999999999999999999999999999999999999 99999999999999887654211 00 01
Q ss_pred C--cccCCceEee--cC-CCCCceEEEEE-EecCCCC---------CC-CcchHHHHHHHHhhcCCCCCCCCCCCCCcch
Q 013646 222 S--VYTGGDYRCQ--AD-SGDQLTHFVLA-FELPGGW---------HK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYS 285 (439)
Q Consensus 222 ~--~~~~~~~~~~--~~-~~~~~~~i~~~-~~~~~~~---------~~-~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s 285 (439)
+ .+......+. .. .+..+..+.++ |++++.. .. .+++.++.||+.+|+++.+ |
T Consensus 349 ~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLggg~s-----------S 417 (1119)
T PTZ00432 349 LYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLGTPE-----------S 417 (1119)
T ss_pred cccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHHHcCCCc-----------c
Confidence 1 1111122221 11 11235555554 9874210 12 2578999999999998755 9
Q ss_pred HHHHHHHhhCCCeeEE-EeeccccCCcceEEEEEe-eCh-------hhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 013646 286 RLYRRVLNEFPQVQSF-SAFSNIYNHSGMFGIQGT-TGS-------DFVSKAIDLAARELISVATPGEVDQVQLDRAKQS 356 (439)
Q Consensus 286 ~L~~~lR~~~g~~y~v-~~~~~~~~~~~~~~i~~~-~~~-------~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~ 356 (439)
+|++.||+ .|++|++ .+++......+.|.+.+. +++ +++.++.+.+.++++++.++| ++++++++++.+
T Consensus 418 ~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eG-i~~eele~a~~q 495 (1119)
T PTZ00432 418 VLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEG-FNKSAVEASLNN 495 (1119)
T ss_pred HHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 99999996 7999986 445555667788888875 332 346789999999999999988 999999999999
Q ss_pred HHHHHHHcccC----hHHHHHHHHHHHHhcCCCCC---HHHHHHHHhc-C--CHHHHHHHHHHhhC
Q 013646 357 TKSAILMNLES----RMVVSEDIGRQVLTYGERKP---VEHFLKTVEG-V--TAKDIASVAQKLLS 412 (439)
Q Consensus 357 l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~-v--t~~dv~~~a~~~l~ 412 (439)
+.-++...... .-..+..+...+++++++.. .+...+.++. + +..-+.+++++||-
T Consensus 496 lef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll 561 (1119)
T PTZ00432 496 IEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLL 561 (1119)
T ss_pred HHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHcc
Confidence 88766543211 24455666666665555533 3333444432 2 33569999999997
No 7
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=2.5e-33 Score=248.09 Aligned_cols=399 Identities=27% Similarity=0.422 Sum_probs=314.8
Q ss_pred eeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 14 MVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 14 ~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
+.++|.| ..+...|+.++.+.|++|+++|+..+.|++|+++...++.|++++...|.+..+..|+.++.+.++|.
T Consensus 24 ~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~ 103 (429)
T KOG2583|consen 24 KTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATREL 103 (429)
T ss_pred hhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecce
Confidence 4688999 88888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL-TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 166 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k-~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 166 (439)
+.+.++++.++++..|.+|.+++.+|.|.||+++... ..|..++.. .+|...+++.+|+..| + .++++++.+.-.
T Consensus 104 ~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~~--~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~ 180 (429)
T KOG2583|consen 104 IGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLAY--QTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQ 180 (429)
T ss_pred EEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhhh--cChHHHHHHHHHHHHHhc-ccCCcccCCccc
Confidence 9999999999999999999999999999999999888 666655554 7899999999999999 6 899998888788
Q ss_pred hccCCHHHHHHHHHhhCCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCCCCCCCcccCCceEeecCCCCCceEEEEEE
Q 013646 167 INRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAF 246 (439)
Q Consensus 167 l~~i~~~~l~~~~~~~~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 246 (439)
+.+++.++|..|.+++|..+|+.++-+|++++.++.+.++++ .++.+......+..+.+++.+..... +..++.+.-
T Consensus 181 vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g--~~~~v~vag 257 (429)
T KOG2583|consen 181 VGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARG--NRVHVAVAG 257 (429)
T ss_pred ccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCC--ceeEEEEec
Confidence 999999999999999999999999999999999999999982 23332222223345667766655444 566665543
Q ss_pred ecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeChhhHH
Q 013646 247 ELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVS 326 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~~ 326 (439)
.+-. ..+.+...+..++.+.|++....+- |. +.+-...-.-.+..-+++++..+|.+.|.|++++...-.++.
T Consensus 258 egAA-a~~~k~~~a~av~~~~Lg~~~~~k~---~t---~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~ 330 (429)
T KOG2583|consen 258 EGAA-AGNLKVLAAQAVLLAALGNSAPVKR---GT---GLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAG 330 (429)
T ss_pred Cccc-ccchHHHHHHHHHHHHHhccccccc---cc---chHHHHHhhccccCceeeeecccccCCceEEEEEEecCccHH
Confidence 3321 1246777888999999997531111 11 222222111122234567788899999999999999888888
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHH
Q 013646 327 KAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASV 406 (439)
Q Consensus 327 ~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~ 406 (439)
++++.....+...+..+ ++....+.+++.++.......+.. ....... .+.......++..|++||..||.++
T Consensus 331 ~~v~s~v~~lks~~~~~-id~~~~~a~~~~l~~~~~ss~~a~-----~~~~~~~-a~~~~~~d~~i~~id~Vt~sdV~~a 403 (429)
T KOG2583|consen 331 KVVSSEVKKLKSALVSD-IDNAKVKAAIKALKASYLSSVEAL-----ELATGSQ-ANLVSEPDAFIQQIDKVTASDVQKA 403 (429)
T ss_pred HHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhcchHHH-----HHhhHHH-hcCCCChHHHHHHhccccHHHHHHH
Confidence 99988888888877765 887777777777665544333221 1111111 1222367899999999999999999
Q ss_pred HHHhhCCCCeEEEecCCCCCCCHHHH
Q 013646 407 AQKLLSSPLTMASYGDVINVPSYDAV 432 (439)
Q Consensus 407 a~~~l~~~~~~~v~g~~~~~~~~~~~ 432 (439)
+++++..+..++.+|+...+|..+++
T Consensus 404 ~kk~~s~kls~aA~Gnl~~vPY~DEL 429 (429)
T KOG2583|consen 404 AKKFLSGKLSLAAYGNLSNVPYLDEL 429 (429)
T ss_pred HHHhccCcceeeeeccccCCcccccC
Confidence 99999889999999999999998864
No 8
>PRK15101 protease3; Provisional
Probab=100.00 E-value=2e-31 Score=283.94 Aligned_cols=367 Identities=8% Similarity=0.051 Sum_probs=286.9
Q ss_pred CccC---CCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecC
Q 013646 21 KHQW---YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALK 97 (439)
Q Consensus 21 ~~~~---~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 97 (439)
.+++ ..|++.+.+.+.+|...+++.+.|++.++..|+ +.+..++....+..|.+++.. +.+++.+++++++
T Consensus 537 ~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll-----~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s 610 (961)
T PRK15101 537 MPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA-----GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYT 610 (961)
T ss_pred eCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH-----HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecC
Confidence 5555 679999999999999999999999999999998 334455666667788899988 7999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHH
Q 013646 98 TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLL 175 (439)
Q Consensus 98 ~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l 175 (439)
++++.+|+++.+.+.+|.|++++|+++|+.++++++... ..+...+...+ ..+ .|||+.+ .++.+.|.++|.+|+
T Consensus 611 ~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~py~~~-~~~~~~l~~it~edl 687 (961)
T PRK15101 611 QRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPA--QMLSQVPYFER-DERRKLLPSITLKDV 687 (961)
T ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHH--HHHhcCCCCCH-HHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999998653 33433333322 345 8898864 568899999999999
Q ss_pred HHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCC-CC-CCcc-cCCceEeecCCCCCceEEEEEEecCCC
Q 013646 176 EEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE-EP-KSVY-TGGDYRCQADSGDQLTHFVLAFELPGG 251 (439)
Q Consensus 176 ~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 251 (439)
++|++++|.+.+++++|+| ++.+++.++++++++.++..+... .. .... .+....+.......+..+.+.|..++
T Consensus 688 ~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 766 (961)
T PRK15101 688 LAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG- 766 (961)
T ss_pred HHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC-
Confidence 9999999999999999999 999999999998887776432211 10 0011 11222222222224455666664443
Q ss_pred CCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEee---ChhhHHHH
Q 013646 252 WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT---GSDFVSKA 328 (439)
Q Consensus 252 ~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~---~~~~~~~~ 328 (439)
.. .....+++.+|+++ ++++||+.||+++|++|.|+++.....+.+.+.+.+++ +|+.+.+.
T Consensus 767 -~~---~~~~~v~~~lLg~~-----------~ssrlf~~LRtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~ 831 (961)
T PRK15101 767 -YD---EYQSSAYSSLLGQI-----------IQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQR 831 (961)
T ss_pred -CC---CHHHHHHHHHHHHH-----------HhHHHHHHHHHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHH
Confidence 22 26667778888764 56999999999999999999998777666666666644 46667777
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcC-CCCCHHHHHHHHhcCCHHHHHHHH
Q 013646 329 IDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG-ERKPVEHFLKTVEGVTAKDIASVA 407 (439)
Q Consensus 329 ~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vt~~dv~~~a 407 (439)
++.+.+++.+... | +|++||+++|+.++.++....+++...+..+|..+..++ ..+..+++.+.|++||.+||++++
T Consensus 832 i~~f~~~~~~~l~-~-lt~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~fd~~~~~~~~i~~vT~edv~~~~ 909 (961)
T PRK15101 832 YQAFFPQAEAKLR-A-MKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFF 909 (961)
T ss_pred HHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCcChHHHHHHHHHcCCHHHHHHHH
Confidence 7777777544444 5 999999999999999999999999999999998876333 346788999999999999999999
Q ss_pred HHh-hC-CC
Q 013646 408 QKL-LS-SP 414 (439)
Q Consensus 408 ~~~-l~-~~ 414 (439)
++| +. ++
T Consensus 910 ~~~~~~~~~ 918 (961)
T PRK15101 910 HQAVIEPQG 918 (961)
T ss_pred HHHhcCCCC
Confidence 998 65 44
No 9
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-30 Score=256.01 Aligned_cols=394 Identities=16% Similarity=0.148 Sum_probs=307.2
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCH-HHHHHHHHHcCCeeeeeecCc
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQASASRE 87 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~-~~l~~~l~~~g~~~~~~~~~~ 87 (439)
..+||| +.++..+.....|.|++|+.++|.+.+|+||++|||+|.|+++++. ..+..+|+.+||+.|++|..+
T Consensus 26 ~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~ 105 (937)
T COG1025 26 AIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGE 105 (937)
T ss_pred EEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCCC
Confidence 679999 9999999999999999999999999999999999999999999875 558899999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013646 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 166 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 166 (439)
.|+|.+.+..+.++.+|+-+.+++.+|.|+++..++|+..|-+|......+..+++++.....+- +||+++...|..++
T Consensus 106 ~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~T 185 (937)
T COG1025 106 RTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLET 185 (937)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChhh
Confidence 99999999999999999999999999999999999999999999999988888888888888888 99999988899999
Q ss_pred hcc----CCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CcccCCc--eEeecCCCC
Q 013646 167 INR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGGD--YRCQADSGD 237 (439)
Q Consensus 167 l~~----i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~ 237 (439)
|.. ...++|++||+++|.++||+++|.| -+.+++.+++.++||.+|+.....++. |++.... ..+......
T Consensus 186 L~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~i~p~~ 265 (937)
T COG1025 186 LSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAK 265 (937)
T ss_pred hccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceEEeccCC
Confidence 988 5689999999999999999999999 999999999999999998765443322 3322211 122222223
Q ss_pred CceEEEEEEecCCCCCCCcc-hHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccC-CcceEE
Q 013646 238 QLTHFVLAFELPGGWHKDKD-AMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYN-HSGMFG 315 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~-~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~-~~~~~~ 315 (439)
+...+.+.|+.++ ..... .-....++.++|..+. .-|-..|. +.||+.++.++..... +.|.|.
T Consensus 266 ~~~~L~i~f~i~~--~~~~~~~~~~~~~s~Lig~es~-----------gsL~~~Lk-~~Glit~l~a~~~~~~~n~~~f~ 331 (937)
T COG1025 266 PRPRLRIYFPIDD--NSAKFRSKPDEYLSHLIGNESP-----------GSLLAWLK-KQGLITELSAGLDPISGNYGVFA 331 (937)
T ss_pred CCceEEEEEEcCC--cccccccCCHHHHHHHhccCCC-----------chHHHHHH-hccchhhhccccccccCCcceEE
Confidence 6788889999986 23222 3445677778887543 33444554 6899999998876654 677788
Q ss_pred EEEeeC---hhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcc-cChHHHHHHHHHHHHhcCCCCCHHHH
Q 013646 316 IQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVLTYGERKPVEHF 391 (439)
Q Consensus 316 i~~~~~---~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (439)
|..... -.+.++++..+.+.+.-+..+| +....|+....-.-..+.... ..+.+....++..+. ..........
T Consensus 332 is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~-~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~-~~p~~~~~~~ 409 (937)
T COG1025 332 ISYELTDKGLAHYDRVIALTFQYLNLLREKG-IPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNME-REPVEHTLYA 409 (937)
T ss_pred EEeehhhcchhhHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcc-cCChhhhhch
Confidence 776543 3567889999999999998888 888888887666554444332 233444444443332 1111223333
Q ss_pred HHHHhcCCHHHHHHHHHHhhCCCCeEEEecCCC
Q 013646 392 LKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 424 (439)
Q Consensus 392 ~~~i~~vt~~dv~~~a~~~l~~~~~~~v~g~~~ 424 (439)
.-.+..-++++++.++.-...++.++..+++..
T Consensus 410 ~~~~~~yd~~~~~~~l~~~~pen~R~~lis~~~ 442 (937)
T COG1025 410 SLVLPRYDPKAIQERLALMTPENARLWLISKLE 442 (937)
T ss_pred hhcccccCHHHHHHHHHhhCccceEEEEecCCC
Confidence 455667788889998875544788887777643
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.4e-29 Score=253.58 Aligned_cols=403 Identities=15% Similarity=0.134 Sum_probs=310.6
Q ss_pred cccchhhhhh-eeeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCH-HHHHHHHHH
Q 013646 4 LVKPRFLLYQ-MVSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEA 75 (439)
Q Consensus 4 ~~~~~~~~~~-~~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~-~~l~~~l~~ 75 (439)
++++...... ...+|+| +.|+..+..++.+.|++|+..||.+.+|+|||+|||+|.||.+|+- .++..++..
T Consensus 18 ~~k~~~d~r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk 97 (974)
T KOG0959|consen 18 IVKSLGDTREYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSK 97 (974)
T ss_pred cccCCCCccceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHh
Confidence 3444443222 2679999 7777777899999999999999999999999999999999999975 456778999
Q ss_pred cCCeeeeeecCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CC
Q 013646 76 IGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SG 154 (439)
Q Consensus 76 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~ 154 (439)
+||+.||+|+.++|+|.+.+..++++.+|+.++.++..|.|+++..+||+.+|..|.+...++..++..+......- +|
T Consensus 98 ~gGssNA~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~h 177 (974)
T KOG0959|consen 98 NGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGH 177 (974)
T ss_pred cCCccccccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888777777 99
Q ss_pred CCCCCCCCChhhhccCC-----HHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCcccC
Q 013646 155 ALANPLLAPESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG 226 (439)
Q Consensus 155 ~~~~~~~g~~~~l~~i~-----~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~ 226 (439)
||+....|..+.|.+.. .+.|.+||++||.+++|+++|+| .+.+.+..++...|+.+++...+.+. .+++..
T Consensus 178 p~~kF~tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~ 257 (974)
T KOG0959|consen 178 PYSKFSTGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLP 257 (974)
T ss_pred cchhccccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCCh
Confidence 99999999999999998 99999999999999999999999 99999999999999999876654432 222221
Q ss_pred ---CceEeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEe
Q 013646 227 ---GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSA 303 (439)
Q Consensus 227 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~ 303 (439)
+......+ -.+...+.+.|+.|+. ...-+.-....+..++|..+. +-|...|| .+||+-+..+
T Consensus 258 e~~~~~~~v~p-ik~~~~l~is~~~p~~-~~~y~~kP~~y~~hLigheg~-----------GSL~~~Lk-~~gw~~sl~a 323 (974)
T KOG0959|consen 258 EELKKLVRVVP-IKDGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHEGP-----------GSLLSYLK-RLGWATSLEA 323 (974)
T ss_pred HHhCcEEEEEe-ccccceEEEEEecCCc-ccccccCcHHHHHHHhccCCc-----------chHHHHHH-Hhhchheeec
Confidence 11222222 2367788889999963 244455566777788885543 45667887 5889999888
Q ss_pred ecc-ccCCcceEEEEEeeC---hhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHH-cccChHHHHHHHHHH
Q 013646 304 FSN-IYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQ 378 (439)
Q Consensus 304 ~~~-~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~-~~~~~~~~~~~~~~~ 378 (439)
+.. ...+.+.|.+.+... -+++++++..+.+.+.-+...| ....-++.....-...+.. ..+.+...+..++..
T Consensus 324 ~~~~~as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~-~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~n 402 (974)
T KOG0959|consen 324 GIPEFASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAG-PEKWIFKELQLISEVKFRFQDKEPPMEYASEIASN 402 (974)
T ss_pred CCCccccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhhhhheeecccCCcHHHHHHHHhh
Confidence 765 445667777777544 3567889999998888777766 5555566555444433333 234666666666665
Q ss_pred HHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHhhCCCCeEEEecC
Q 013646 379 VLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD 422 (439)
Q Consensus 379 ~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~v~g~ 422 (439)
+. +-....+-.....+....++.|+.+....-..+..+++++.
T Consensus 403 lq-~~P~~~il~~~~ll~~~~p~~i~~~~~~L~p~n~~v~~~s~ 445 (974)
T KOG0959|consen 403 LQ-YYPVEDVLTGSYLLTEFDPDLIQEVLSSLVPSNMRVILVSR 445 (974)
T ss_pred cc-cCChHHhhcchhhhhhcChHHHHHHHHhcCcccceeeeeee
Confidence 54 22223444455677788888888877544447777777654
No 11
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.96 E-value=9.6e-27 Score=230.22 Aligned_cols=385 Identities=12% Similarity=0.129 Sum_probs=288.4
Q ss_pred CCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHH--cCCeeeeeecCceEEEEEEecC-CCHHH
Q 013646 26 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNVQASASREQMGYSFDALK-TYVPE 102 (439)
Q Consensus 26 ~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~--~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (439)
.+.....++|+ .+|.+..|++|.+||+.++|+.+++-.+..-.+.+ ++-.+||.|+.|.|+|-+++.. +++-.
T Consensus 40 d~~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df~N 115 (978)
T COG1026 40 DPNNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDFYN 115 (978)
T ss_pred CcCceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchHHH
Confidence 44445555554 45667889999999999999999998776544433 3445899999999999998776 58999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHH--------------HHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 013646 103 MVELLIDCVRNPVFLDWEVNEQ--------------LTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 167 (439)
Q Consensus 103 ~l~ll~~~l~~~~~~~~~~~~~--------------k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l 167 (439)
++....|.+.+|.++++.|.+| +.+|..|++....++...+++.+.+.+| +..|+....|.+..|
T Consensus 116 Ll~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG~P~~I 195 (978)
T COG1026 116 LLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNI 195 (978)
T ss_pred HHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCCCcccc
Confidence 9999999999999999999887 5678889998899999999999999999 888999999999999
Q ss_pred ccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhh-cCCCCCCCCC-CCCCC-cccC-Cce----Eee-cCCCC
Q 013646 168 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPR-EEPKS-VYTG-GDY----RCQ-ADSGD 237 (439)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~-~~~~~~~~~~-~~~~~-~~~~-~~~----~~~-~~~~~ 237 (439)
..+|.+++++||+++|.|+|+.+++.| ++.++.++.++.. +......... +.+.. .+.. ... .+. ...+.
T Consensus 196 ~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~~~~~~~~~ypi~~~~~de 275 (978)
T COG1026 196 PDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISFDEEDE 275 (978)
T ss_pred cccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccCcccccceeeccCCCCCCC
Confidence 999999999999999999999999999 9999999999986 5444333311 11211 1111 111 111 11234
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCe-eEEEeeccccCCcceEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV-QSFSAFSNIYNHSGMFGI 316 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~-y~v~~~~~~~~~~~~~~i 316 (439)
.++.+.++|.++.. .+..+..++.||..+|-++.+ ++|.+.|-| -|++ +.++..+...-....|.+
T Consensus 276 ~q~~~~lsWl~~~~-~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lie-sglg~~~~~g~~~~~~~~~~f~v 342 (978)
T COG1026 276 DQGLLSLSWLGGSA-SDAEDSLALEVLEEILLDSAA-----------SPLTQALIE-SGLGFADVSGSYDSDLKETIFSV 342 (978)
T ss_pred ceeEEEEEEecCCc-ccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHH-cCCCcccccceeccccceeEEEE
Confidence 78999999999873 245788999999999998765 999999986 4555 444443443333455665
Q ss_pred EEe-eChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHhcCCCCC---HHH
Q 013646 317 QGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVV--SEDIGRQVLTYGERKP---VEH 390 (439)
Q Consensus 317 ~~~-~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~ 390 (439)
.+. ++.+++++.-+.+.+.++++.++| ++.+.++.++.++.-++......+... +......+++++++.. ...
T Consensus 343 ~~~gv~~ek~~~~k~lV~~~L~~l~~~g-i~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~ 421 (978)
T COG1026 343 GLKGVSEEKIAKLKNLVLSTLKELVKNG-IDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSLYGWLNGGDPEDSLRFLD 421 (978)
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhccccccCCChhhhhhhHH
Confidence 554 567788888899999999999998 999999999999887766543344332 3344445555666633 344
Q ss_pred HHHHHhcCCHHH--HHHHHHHhhC-CC-CeEEEecCCCCCCC
Q 013646 391 FLKTVEGVTAKD--IASVAQKLLS-SP-LTMASYGDVINVPS 428 (439)
Q Consensus 391 ~~~~i~~vt~~d--v~~~a~~~l~-~~-~~~~v~g~~~~~~~ 428 (439)
+.+.|++--..+ +.+++++||- ++ .+++++-|...++.
T Consensus 422 ~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~ 463 (978)
T COG1026 422 YLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEE 463 (978)
T ss_pred HHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHH
Confidence 555555533444 9999999998 44 66777777655443
No 12
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.91 E-value=7.3e-24 Score=174.99 Aligned_cols=142 Identities=37% Similarity=0.564 Sum_probs=136.0
Q ss_pred ccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHH
Q 013646 22 HQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVP 101 (439)
Q Consensus 22 ~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
+++..|.+.+.++|++|+++|++++.|++|+++||+++|+.+++..++.+.++..|+.+++.++.+++.|.+++++++++
T Consensus 6 ~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~ 85 (149)
T PF00675_consen 6 EDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLE 85 (149)
T ss_dssp ESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHH
T ss_pred EcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccch
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013646 102 EMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 163 (439)
Q Consensus 102 ~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~ 163 (439)
.+|+++.+++.+|.|++++|+++|..+..+++....+|...+.+.+++.+| ++||++++.|+
T Consensus 86 ~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 86 KALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999 99999998876
No 13
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.5e-22 Score=187.96 Aligned_cols=384 Identities=15% Similarity=0.131 Sum_probs=278.4
Q ss_pred CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcC-CeeeeeecCceEEEEEEecCC-
Q 013646 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG-GNVQASASREQMGYSFDALKT- 98 (439)
Q Consensus 21 ~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~- 98 (439)
+-..+.++|+-.+.|..-..+ ..|+.|-+|||.|.|+++|+...+.+-+.+.. ++.|+.|+.|+|.|.+++...
T Consensus 34 ~~~~pts~vhG~f~v~TEa~~----d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLStag~d 109 (1022)
T KOG0961|consen 34 IGEVPTSMVHGAFSVVTEADS----DDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSD 109 (1022)
T ss_pred EeecCCcceeeeEEeeeeecC----CCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEeeccccc
Confidence 344445577777776655543 56999999999999999999999887777654 589999999999999998864
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHH----------HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCCCCCChhh
Q 013646 99 YVPEMVELLIDCVRNPVFLDWEVNEQ----------LTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLAPESA 166 (439)
Q Consensus 99 ~~~~~l~ll~~~l~~~~~~~~~~~~~----------k~~~~~e~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~g~~~~ 166 (439)
.+-.+|....+-+..|.+++++|..+ +.++..|++..+.+-............| .++|.....|..+.
T Consensus 110 GFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~kn 189 (1022)
T KOG0961|consen 110 GFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKN 189 (1022)
T ss_pred chHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhh
Confidence 68999999999999999999999887 4778888888777777788888888899 78899999999999
Q ss_pred hccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCC--CC---CCCCc-------ccCCceEeec
Q 013646 167 INRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP--RE---EPKSV-------YTGGDYRCQA 233 (439)
Q Consensus 167 l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~--~~---~~~~~-------~~~~~~~~~~ 233 (439)
|+.+|.+.+++||+++|.++||++.|+| ++.++++...+..-..++.... |. +|... ..+....++.
T Consensus 190 LR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVef 269 (1022)
T KOG0961|consen 190 LRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEF 269 (1022)
T ss_pred HHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeec
Confidence 9999999999999999999999999999 9999999887765443332221 11 11111 0111224444
Q ss_pred C-CCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHh-hCCCeeEEEeeccccCCc
Q 013646 234 D-SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN-EFPQVQSFSAFSNIYNHS 311 (439)
Q Consensus 234 ~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~-~~g~~y~v~~~~~~~~~~ 311 (439)
+ ....+..+.++|.+++. .+.....++++|.++|++... +++.+.+.+ +..++-+++++....-.+
T Consensus 270 p~~Des~G~v~~aW~g~s~-sD~~t~~a~~vL~dyls~sav-----------apf~~~fVeieDP~assv~f~~~~~vrc 337 (1022)
T KOG0961|consen 270 PTDDESRGAVEVAWFGHSP-SDLETHSALHVLFDYLSNSAV-----------APFQKDFVEIEDPLASSVSFHIAEGVRC 337 (1022)
T ss_pred CCcccccceEEEEEcCCCH-HHhhhHHHHHHHHHHhccccc-----------cccccceEEecCccccceeeeeecccce
Confidence 4 23468889999999872 245667899999999998643 667666655 356777776655443333
Q ss_pred ceEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccC--hHHHHHHHHHHHHhcCCC-CCH
Q 013646 312 GMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES--RMVVSEDIGRQVLTYGER-KPV 388 (439)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 388 (439)
.+=-....++.+++++....+.+.+.+-+ .|+=+-+.....+-+-++....+. ++..++.+....++++.. ...
T Consensus 338 ~i~L~f~gVP~EKi~~~~~k~l~~l~et~---~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~ygnedg~~l 414 (1022)
T KOG0961|consen 338 DIRLNFAGVPVEKIDECAPKFLDKLVETA---NIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGDQLYGNEDGELL 414 (1022)
T ss_pred eEEEeecCCcHHHhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhhhhccCcchhHH
Confidence 32233445677888888888877775443 377666666666666666655554 444555555555533332 222
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCC
Q 013646 389 ------EHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 423 (439)
Q Consensus 389 ------~~~~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~ 423 (439)
-++.+.+.+-..+|..++.++||. ++.++|+.-|.
T Consensus 415 ~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVia~Ps 456 (1022)
T KOG0961|consen 415 KKRLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVIAVPS 456 (1022)
T ss_pred HHHHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEEecCc
Confidence 246688889999999999999999 44555544343
No 14
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.3e-22 Score=186.07 Aligned_cols=373 Identities=14% Similarity=0.132 Sum_probs=274.7
Q ss_pred ccCCCCCCCCcHHHHHHHhccCCCCCCCHHH-HHHHHH-HcCCeeeeeecCceEEEEEEec-CCCHHHHHHHHHHhhhCC
Q 013646 38 GSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVE-AIGGNVQASASREQMGYSFDAL-KTYVPEMVELLIDCVRNP 114 (439)
Q Consensus 38 G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~-l~~~l~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ll~~~l~~~ 114 (439)
+.+.-|++..|+.|++||...+|+.+|+-.+ +.+.|. .+...+|++|..|+|+|-+.+. ++++..+.+...|....|
T Consensus 80 ~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAtffP 159 (998)
T KOG2019|consen 80 VFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDATFFP 159 (998)
T ss_pred EeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHHHHHHHHhhhcccch
Confidence 3344456678999999999999999987544 333332 2344689999999999987755 478999999999999999
Q ss_pred CCCHHHHHHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHH
Q 013646 115 VFLDWEVNEQ------------------LTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLL 175 (439)
Q Consensus 115 ~~~~~~~~~~------------------k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l 175 (439)
.+.+.+|.+| |.+|..|++..-.+|...++..+...+| ++.|+....|.+..|.+++.+++
T Consensus 160 klr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eel 239 (998)
T KOG2019|consen 160 KLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEEL 239 (998)
T ss_pred HHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCccccccccCCCCcccCccccHHHH
Confidence 9988888886 6788899998889999999999999999 99999999999999999999999
Q ss_pred HHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC-CC-CcccCCceEee------cCCCCCceEEEEEE
Q 013646 176 EEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PK-SVYTGGDYRCQ------ADSGDQLTHFVLAF 246 (439)
Q Consensus 176 ~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~~~i~~~~ 246 (439)
++||+++|.|+|..+...| +..++.+++++.-|....+.+.... +. ..+.....++. ...+..+....+.|
T Consensus 240 k~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~ 319 (998)
T KOG2019|consen 240 KEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPADPGDLPKKQTKCSNSF 319 (998)
T ss_pred HHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCceeeeecCCCCCCCccceeEEEEEe
Confidence 9999999999999999999 9999999999977765543322211 11 22222111111 11234577777777
Q ss_pred ecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhh-CCCeeEEEeeccccCCcceEEEEEee-Chhh
Q 013646 247 ELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE-FPQVQSFSAFSNIYNHSGMFGIQGTT-GSDF 324 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~-~g~~y~v~~~~~~~~~~~~~~i~~~~-~~~~ 324 (439)
-.+.. .+-.+..++.+|..++-++.+ |++|+.|-|. .|.-.++.+++......+.|.+.... ..++
T Consensus 320 L~~~p-~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseed 387 (998)
T KOG2019|consen 320 LSNDP-LDTYETFALKVLSHLLLDGPS-----------SPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEED 387 (998)
T ss_pred ecCCc-hhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHH
Confidence 76642 355688999999999998765 9999999864 34445677777777777888888765 4567
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHhcCCCCC---HHHHHHH----Hh
Q 013646 325 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSEDIGRQVLTYGERKP---VEHFLKT----VE 396 (439)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~----i~ 396 (439)
+..+.+.+...+.+++..| ++.+.+++...++.-++..+.... -..+..+...|.+..++.. .++.++. +.
T Consensus 388 iekve~lV~~t~~~lae~g-fd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ 466 (998)
T KOG2019|consen 388 IEKVEELVMNTFNKLAETG-FDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLA 466 (998)
T ss_pred HHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHh
Confidence 8888899999999999988 999999999888765543332221 1233445555555556532 2333333 33
Q ss_pred cCCHHHHHHHHHHhhCCC---CeEEEecCC
Q 013646 397 GVTAKDIASVAQKLLSSP---LTMASYGDV 423 (439)
Q Consensus 397 ~vt~~dv~~~a~~~l~~~---~~~~v~g~~ 423 (439)
.-...-++..+++|+.++ .++.+.++.
T Consensus 467 ek~~~lfq~lIkkYilnn~h~~t~smqpd~ 496 (998)
T KOG2019|consen 467 EKSKKLFQPLIKKYILNNPHCFTFSMQPDP 496 (998)
T ss_pred hhchhHHHHHHHHHHhcCCceEEEEecCCc
Confidence 334566899999998832 345555443
No 15
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.89 E-value=5.9e-22 Score=169.94 Aligned_cols=175 Identities=25% Similarity=0.345 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCC---CC-CCCCC-c-ccCC-ceEeecCCCCCce
Q 013646 169 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PR-EEPKS-V-YTGG-DYRCQADSGDQLT 240 (439)
Q Consensus 169 ~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~---~~-~~~~~-~-~~~~-~~~~~~~~~~~~~ 240 (439)
++|.++|++||++||.|+||+++++| ++++++.+.++++|+.|+... .. ....+ . .... ...+....+..++
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQS 80 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSE
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 57999999999999999999999999 999999999999999998653 11 11111 1 1111 1122222222799
Q ss_pred EEEEEEecCCCCC-CCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEe
Q 013646 241 HFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 319 (439)
Q Consensus 241 ~i~~~~~~~~~~~-~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~ 319 (439)
.+.++|++++ . ..++..++.++..+|++. +.++|+..||++.+++|++.+++..+.+.+.|.+++.
T Consensus 81 ~v~~~~~~~~--~~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~ 147 (184)
T PF05193_consen 81 IVSIAFPGPP--IKDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQ 147 (184)
T ss_dssp EEEEEEEEEE--TGTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEE
T ss_pred cccccccccc--ccccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEEE
Confidence 9999999987 5 789999999999999986 4599999999999999999999877778899999999
Q ss_pred eChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 013646 320 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQST 357 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l 357 (439)
+.+++..++++.+.++++++.+.| ++++||+++|++|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~l~~~~-~s~~el~~~k~~L 184 (184)
T PF05193_consen 148 VTPENLDEAIEAILQELKRLREGG-ISEEELERAKNQL 184 (184)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcC
Confidence 999999999999999999999987 9999999999875
No 16
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-18 Score=171.41 Aligned_cols=371 Identities=13% Similarity=0.143 Sum_probs=282.7
Q ss_pred CCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHH
Q 013646 25 YSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMV 104 (439)
Q Consensus 25 ~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (439)
..|...+.+.++......++...-+..|+..++.....++.+ -....|.+++...+.+...++++|.++.++.++
T Consensus 523 ~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y-----~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~ 597 (937)
T COG1025 523 VEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSY-----QASLAGLSFSLAANSNGLDLTISGFTQRLPQLL 597 (937)
T ss_pred cCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhh-----HHHhcceEEEeecCCCceEEEeeccccchHHHH
Confidence 348999999999998888776667777777777544443333 244567788888898999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhC
Q 013646 105 ELLIDCVRNPVFLDWEVNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 183 (439)
Q Consensus 105 ~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~ 183 (439)
..+.+.+....++++.|+..|..+.++++. ....|..++.+.+...+- +...+.....+.+.+++.+++..|...++
T Consensus 598 ~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~--~~~~s~~e~~~~l~~v~~~e~~~f~~~l~ 675 (937)
T COG1025 598 RAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQ--VPYWSREERRNALESVSVEEFAAFRDTLL 675 (937)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhC--CCCcCHHHHHHHhhhccHHHHHHHHHHhh
Confidence 999999999999999999999999999995 467899888888777775 22233333557889999999999999999
Q ss_pred CCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCC-CCCCCC--cccCCceEeec-CCCCCceEEEEEEecCCCCCCCcch
Q 013646 184 TGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP-REEPKS--VYTGGDYRCQA-DSGDQLTHFVLAFELPGGWHKDKDA 258 (439)
Q Consensus 184 ~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 258 (439)
.+....+.|+| ++.+++.++++.....++.... ..+.+. ...++...... ......+..++.+...- .+.++.
T Consensus 676 ~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~~--~~~~~~ 753 (937)
T COG1025 676 NGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQY--DEIKSS 753 (937)
T ss_pred hccceeeeeeccchHHHHHHHHHHHHhhhcccCCcccCCCceeccCCCeeEeeeccCCcccccceeEecccc--chHHHH
Confidence 99999999999 9999999888865544543322 111111 11222222221 11113333333344332 234555
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeC---hhhHHHHHHHHHHH
Q 013646 259 MTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARE 335 (439)
Q Consensus 259 ~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~ 335 (439)
+...++.+++. ..+|.+||++.+++|.|++++....+...+.++++++ |+.+.+.+..+.+.
T Consensus 754 a~s~Ll~~l~~---------------~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~ 818 (937)
T COG1025 754 ALSSLLGQLIH---------------PWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLET 818 (937)
T ss_pred HHHHHHHHHHh---------------HHhHHHhhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHH
Confidence 66678888887 7999999999999999999998887766667777664 66788888999998
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHHHHHhcCCHHHHHHHHHHhhC-
Q 013646 336 LISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLKTVEGVTAKDIASVAQKLLS- 412 (439)
Q Consensus 336 ~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~vt~~dv~~~a~~~l~- 412 (439)
+..... .+++++|+..|+.+++++.....+....+..++..+. .|.. +..+...+.++++|.+++.++....+.
T Consensus 819 ~~~~l~--~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~~~~-~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~ 895 (937)
T COG1025 819 AEPELR--EMSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFG-RGNLDFDHREKKIEAVKTLTKQKLLDFFENALSY 895 (937)
T ss_pred HHHHHH--hCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHhc-cCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhcc
Confidence 888877 3999999999999999999999999999999995544 4433 568889999999999999999998886
Q ss_pred C---CCeEEEecC
Q 013646 413 S---PLTMASYGD 422 (439)
Q Consensus 413 ~---~~~~~v~g~ 422 (439)
. ...+.+.|+
T Consensus 896 ~~g~~l~~~i~g~ 908 (937)
T COG1025 896 EQGSKLLSHIRGQ 908 (937)
T ss_pred cccceeeeeeecc
Confidence 3 355666674
No 17
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.86 E-value=3.9e-19 Score=176.69 Aligned_cols=377 Identities=19% Similarity=0.183 Sum_probs=255.2
Q ss_pred CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeec-----------CceE
Q 013646 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS-----------REQM 89 (439)
Q Consensus 21 ~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~-----------~~~~ 89 (439)
++...+..+++.+.|..+..... ..+-+.-+...+...||++++..++...++.+.|.+++..+ +..+
T Consensus 541 ~~~~tn~i~yl~~~~~~~~l~~~-llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~ 619 (978)
T COG1026 541 HDLFTNGITYLRLYFDLDMLPSE-LLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSF 619 (978)
T ss_pred eecCCCCeEEEEEEeecCCCChh-hhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceE
Confidence 66677789999999999655443 45666666666666799999999999999887765444432 3468
Q ss_pred EEEEEecCCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhc-CCCCCCCCCCC--h
Q 013646 90 GYSFDALKTYVPEMVELLIDCVRNPVFL-DWEVNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGY-SGALANPLLAP--E 164 (439)
Q Consensus 90 ~~~~~~~~~~~~~~l~ll~~~l~~~~~~-~~~~~~~k~~~~~e~~~-~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~--~ 164 (439)
.+++.+..++.+++++++.+++.++.|+ .+.+....+..++.+.. .++++...+.......++ ...+.....|- .
T Consensus 620 ~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~ 699 (978)
T COG1026 620 SISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQV 699 (978)
T ss_pred EEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHH
Confidence 8999999999999999999999999995 34444334444444443 245566666666666666 44444433332 2
Q ss_pred hhhccCC-----------HHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCC--C---CCCCC---CCcc
Q 013646 165 SAINRLN-----------STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI--H---PREEP---KSVY 224 (439)
Q Consensus 165 ~~l~~i~-----------~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~--~---~~~~~---~~~~ 224 (439)
+-|.++. .+.|++.+++++..+|+.+++.| .+ .+.+.+++-|..+.+. + .+..+ ....
T Consensus 700 k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~--~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 777 (978)
T COG1026 700 KFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID--KILDLLENPLLKFLEHLLPGFELPTPPKNPHLDL 777 (978)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh--hhHHHHHHHhhhhhcccCcccccCCCCCCcchhh
Confidence 2333332 35788999999999999888888 43 3344444433333211 1 11111 1111
Q ss_pred cC-CceEeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEe
Q 013646 225 TG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSA 303 (439)
Q Consensus 225 ~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~ 303 (439)
.+ .......+. +.++..++|+.......+||.+++.|++++|+. ..||..+|++. .||++++
T Consensus 778 ~~~~~~~~ii~~--p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~--------------~~lw~~IR~~G-GAYGa~a 840 (978)
T COG1026 778 ISSLSEATIIPS--PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS--------------GYLWNKIREKG-GAYGASA 840 (978)
T ss_pred hccccceEEecc--HHHHHHHhhhccCCCCCCccchHHHHHHHHhcc--------------chhHHHHHhhc-ccccccc
Confidence 11 222233333 334444444332222689999999999999995 79999999865 5999888
Q ss_pred eccccCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcC
Q 013646 304 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG 383 (439)
Q Consensus 304 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (439)
..... .|.|.++...+|+ ..++.+.+.+.++.+... ++++.+++.++-..++.+. ..+++......-....+.+-
T Consensus 841 s~~~~--~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~-~~~~~d~~~~ilg~i~~~d-~p~sp~~~~~~s~~~~~sg~ 915 (978)
T COG1026 841 SIDAN--RGVFSFASYRDPN-ILKTYKVFRKSVKDLASG-NFDERDLEEAILGIISTLD-TPESPASEGSKSFYRDLSGL 915 (978)
T ss_pred ccccC--CCeEEEEecCCCc-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcccc-cccCCcceehhhHHHHHhcC
Confidence 76644 4778777766766 668888888888888875 6999999999999887654 34566555544333444344
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHhhC---CCCeEEEecC
Q 013646 384 ERKPVEHFLKTVEGVTAKDIASVAQKLLS---SPLTMASYGD 422 (439)
Q Consensus 384 ~~~~~~~~~~~i~~vt~~dv~~~a~~~l~---~~~~~~v~g~ 422 (439)
.+...+.+++.|.++|++||.++.++|+. +...++++|.
T Consensus 916 ~~~~~qa~re~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~ 957 (978)
T COG1026 916 TDEERQAFRERLLDVTKEDIKEVMDKYLLNFSSENSIAVFAG 957 (978)
T ss_pred CHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccceEEEEec
Confidence 45667889999999999999999999986 5566666665
No 18
>PTZ00432 falcilysin; Provisional
Probab=99.85 E-value=5.9e-19 Score=186.94 Aligned_cols=381 Identities=13% Similarity=0.075 Sum_probs=254.8
Q ss_pred CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhcc-CCCCCCCHHHHHHHHHHcCCeeeee----ec----------
Q 013646 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREVEAIGGNVQAS----AS---------- 85 (439)
Q Consensus 21 ~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~-~g~~~~~~~~l~~~l~~~g~~~~~~----~~---------- 85 (439)
++...+..+++.+.|......+ +......|+..++. .||++++..++...+....|++++. ++
T Consensus 674 ~~~~TnGi~y~~~~fdl~~l~~--e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~ 751 (1119)
T PTZ00432 674 HPIESRGILYLDFAFSLDSLTV--DELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPY 751 (1119)
T ss_pred EecCCCCeEEEEEEecCCCCCH--HHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCccc
Confidence 5555667999999999887654 34455556666665 5999999999999999987766654 22
Q ss_pred --CceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCC-CCCCC
Q 013646 86 --REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGYSGA-LANPL 160 (439)
Q Consensus 86 --~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~-~~~~k~~~~~e~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~~ 160 (439)
..++.+++.++.++++.+++++.+++.++.|++.+ +....+..+..+... ..+....+...+...+-... +....
T Consensus 752 ~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~ 831 (1119)
T PTZ00432 752 NGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELV 831 (1119)
T ss_pred ccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHh
Confidence 23688999999999999999999999999998653 444444444444432 22444444433222111011 11111
Q ss_pred CC--ChhhhccCC-----------HHHHHHHHHhhCCCCCeEEEEcC-C-CHHHHHHHHHhhcCCCCCC----C--CCCC
Q 013646 161 LA--PESAINRLN-----------STLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSI----H--PREE 219 (439)
Q Consensus 161 ~g--~~~~l~~i~-----------~~~l~~~~~~~~~~~~~~l~ivG-~-~~~~~~~~i~~~~~~~~~~----~--~~~~ 219 (439)
.| ...-|+.+. .+.|.+.+++.|.++|+.+.++| . ..+.+.+.+..++..++.. . ....
T Consensus 832 ~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 911 (1119)
T PTZ00432 832 NGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDK 911 (1119)
T ss_pred cCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 11 112222211 34588899999999999999999 5 5566667666676666421 1 1111
Q ss_pred CCC-------cccC--CceEeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHH
Q 013646 220 PKS-------VYTG--GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRR 290 (439)
Q Consensus 220 ~~~-------~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~ 290 (439)
+.. .+.. ....+..+. ...++..+.+... ..+++.+++.|+..+|+. +.||+.
T Consensus 912 ~~~~~~~~~~~~~~~~~~e~~~~p~--~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~--------------~yLw~~ 973 (1119)
T PTZ00432 912 VWVKEVLDKKLMESVDKNEFIVLPT--RVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN--------------SYLWKT 973 (1119)
T ss_pred ccccccccccccCCcccceEEEccC--ceeEEEEeccccc--CCCccCHHHHHHHHHHcc--------------ccchHH
Confidence 110 0111 222334444 6677777644333 466779999999999995 799999
Q ss_pred HHhhCCCeeEEEeeccccCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHHHHHHcccCh
Q 013646 291 VLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQVQLDRAKQSTKSAILMNLESR 368 (439)
Q Consensus 291 lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~g~i~~~el~~ak~~l~~~~~~~~~~~ 368 (439)
||++.| ||++++.... .|.|.++..-+|. +.++++.+.+..+-+++ . .++++++++++.+.+..+.. ..+|
T Consensus 974 IR~~GG-AYG~~~~~~~---~G~~~f~SYRDPn-~~~Tl~~f~~~~~~l~~~~~-~~~~~~l~~~iig~~~~~D~-p~~p 1046 (1119)
T PTZ00432 974 VRMSLG-AYGVFADLLY---TGHVIFMSYADPN-FEKTLEVYKEVASALREAAE-TLTDKDLLRYKIGKISNIDK-PLHV 1046 (1119)
T ss_pred HcccCC-ccccCCccCC---CCeEEEEEecCCC-HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhccCC-CCCh
Confidence 998655 9999866543 3666655555554 55666666666666655 3 49999999999999987655 3466
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHhhC--CCCeEEEecCCCCCCC
Q 013646 369 MVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVPS 428 (439)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~--~~~~~~v~g~~~~~~~ 428 (439)
..........++.+...+..+++++.|.++|++||+++|+++.. +...++|+|+...+.+
T Consensus 1047 ~~~g~~~~~~~l~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~~~~~~~v~g~~~~~~~ 1108 (1119)
T PTZ00432 1047 DELSKLALLRIIRNESDEDRQKFRKDILETTKEDFYRLADLMEKSKEWEKVIAVVNSKTSDT 1108 (1119)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEEEECHHHhhh
Confidence 66665555555534455778999999999999999999999987 6678999998765444
No 19
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-16 Score=157.27 Aligned_cols=370 Identities=14% Similarity=0.137 Sum_probs=286.5
Q ss_pred eeecCCCccCC--CCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEE
Q 013646 15 VSKLPRKHQWY--SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYS 92 (439)
Q Consensus 15 ~~~l~n~~~~~--~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~ 92 (439)
..+|+-.+++. .|.+.+.+.+........+...+++.++..++..-.. +........|..+..+.+.....++
T Consensus 518 ~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~-----E~~Y~A~~aGl~~~~~~s~~G~~~~ 592 (974)
T KOG0959|consen 518 FSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLN-----EYLYPALLAGLTYSLSSSSKGVELR 592 (974)
T ss_pred cceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHh-----HHHHHHHhccceEEeeecCCceEEE
Confidence 34444433333 4789999999999999999999999999988854332 2333355678889999999999999
Q ss_pred EEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCC
Q 013646 93 FDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLN 171 (439)
Q Consensus 93 ~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~ 171 (439)
+.+.++.++.+++.+.+++.+..++++.|+..++.+..+++. ...+|...+...+...+-... +......+.++.++
T Consensus 593 v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~--W~~~e~~~al~~~~ 670 (974)
T KOG0959|consen 593 VSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESI--WSKEELLEALDDVT 670 (974)
T ss_pred EeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccc--cchHHHHHHhhccc
Confidence 999999999999999999999999999999999999999997 677888877776665553333 33333557888899
Q ss_pred HHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC-C----------CCccc-CCceEeec--CCC
Q 013646 172 STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-P----------KSVYT-GGDYRCQA--DSG 236 (439)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~-~----------~~~~~-~~~~~~~~--~~~ 236 (439)
.+++..|...++.+--+.+.|.| ++.+++.++++.....+ ..+.+.. + ...++ +....+.. ...
T Consensus 671 le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~ 749 (974)
T KOG0959|consen 671 LEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKT 749 (974)
T ss_pred HHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEEEcccccC
Confidence 99999999999999999999999 99999999766655544 2211111 1 01122 22232222 234
Q ss_pred CCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEE
Q 013646 237 DQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 316 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i 316 (439)
.+.+.+.+.|.+.. .+..+...+.++..++. .++|+.||++..++|-+++......+...+.+
T Consensus 750 ~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~---------------ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~~i 812 (974)
T KOG0959|consen 750 DDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK---------------EPAFDQLRTKEQLGYIVSTGVRLNYGTVGLQI 812 (974)
T ss_pred CCCceEEEEEEccc--chhHHHHHHHHHHHHhc---------------cchHHhhhhHHhhCeEeeeeeeeecCcceeEE
Confidence 46777878888643 46778888999999998 68899999998899999988877666655666
Q ss_pred EEee--ChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHH
Q 013646 317 QGTT--GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 392 (439)
Q Consensus 317 ~~~~--~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 392 (439)
.++. .++.++..++.+.+.+.+... .+++++|+.-+..++........+.......+|.... .+.+ +..+...
T Consensus 813 ~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei~-~~~y~f~r~~~~v 889 (974)
T KOG0959|consen 813 TVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEII-IGQYNFDRDEKEV 889 (974)
T ss_pred EEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHHH-hhhhcchhhHHHH
Confidence 6654 466788888888888888877 5999999999999999999888888888888888776 4444 4467788
Q ss_pred HHHhcCCHHHHHHHHHHhhC
Q 013646 393 KTVEGVTAKDIASVAQKLLS 412 (439)
Q Consensus 393 ~~i~~vt~~dv~~~a~~~l~ 412 (439)
+.+.++|.+|+..+...++.
T Consensus 890 ~~l~~i~k~~~i~~f~~~~~ 909 (974)
T KOG0959|consen 890 EALKKITKEDVINFFDEYIR 909 (974)
T ss_pred HHHHhhhHHHHHHHHHhhcc
Confidence 89999999999999999885
No 20
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.3e-16 Score=151.05 Aligned_cols=372 Identities=15% Similarity=0.091 Sum_probs=245.8
Q ss_pred ccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeee--cC--------ceEEE
Q 013646 22 HQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA--SR--------EQMGY 91 (439)
Q Consensus 22 ~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~--~~--------~~~~~ 91 (439)
....+.++++++.+..|+.-+. -.+-+.-+++.|+..||+..+..++.+.+..+.|.++++. .. -.+.+
T Consensus 576 dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~ 654 (998)
T KOG2019|consen 576 DLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVF 654 (998)
T ss_pred eccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEe
Confidence 3444569999999999996653 4677888999999999999999999999999877655543 21 12566
Q ss_pred EEEecCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhc--CCCCCCCCCCChhh-
Q 013646 92 SFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGY--SGALANPLLAPESA- 166 (439)
Q Consensus 92 ~~~~~~~~~~~~l~ll~~~l~~~~~~~~-~~~~~k~~~~~e~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~g~~~~- 166 (439)
...+...+.+.+++++..++.++.|+++ .|........+++... ..+. ...+..+.... ....-...+|-.+.
T Consensus 655 ~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsG--H~~A~~rs~a~l~~ag~i~EqlgGl~ql 732 (998)
T KOG2019|consen 655 SGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSG--HGFAAARSAAMLTPAGWISEQLGGLSQL 732 (998)
T ss_pred chhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCccc--chhHhhhhhcccCcccchHhHhcchHHH
Confidence 7778888999999999999999999854 3333333333333322 2222 22333333322 11111111222222
Q ss_pred -----hccCC-------HHHHHHHHHhhCCCCCeEEEEcC--CCHHHHHHHHHhhcCCCCCC-CCCCC-CC-CcccC--C
Q 013646 167 -----INRLN-------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLSDLPSI-HPREE-PK-SVYTG--G 227 (439)
Q Consensus 167 -----l~~i~-------~~~l~~~~~~~~~~~~~~l~ivG--~~~~~~~~~i~~~~~~~~~~-~~~~~-~~-~~~~~--~ 227 (439)
|.+.. .+.|.+..+-+...+||.+.|.. .....+.+.+++++..+|.. +.... .+ +..+. .
T Consensus 733 ~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~~~ 812 (998)
T KOG2019|consen 733 EFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLRSE 812 (998)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccCccccCCCCce
Confidence 21111 34577777778889999999988 88999999999999888742 22211 11 11111 2
Q ss_pred ceEeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccc
Q 013646 228 DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI 307 (439)
Q Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~ 307 (439)
.+++..+. -+..++.-+-.+-+ ++++|-+.+.|++.+|.. .+||.++|++.| +|+.+|.+..
T Consensus 813 ~i~~~~P~-fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRekGG-AYGgg~s~~s 874 (998)
T KOG2019|consen 813 AIRVVIPT-FQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREKGG-AYGGGCSYSS 874 (998)
T ss_pred eEEEeccc-cchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHhcC-ccCCcccccc
Confidence 22334442 13455554444544 789999999999999996 899999998766 8998887765
Q ss_pred cCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCC
Q 013646 308 YNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP 387 (439)
Q Consensus 308 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (439)
.. |.|.++..-+|. ..+.++.+...-.-++.. ++++++++.||...+..... ...|.... +. .++.+...+.
T Consensus 875 h~--GvfSf~SYRDpn-~lktL~~f~~tgd~~~~~-~~~~~dldeAkl~~f~~VDa-p~~P~~kG--~~-~fl~gvtDem 946 (998)
T KOG2019|consen 875 HS--GVFSFYSYRDPN-PLKTLDIFDGTGDFLRGL-DVDQQDLDEAKLGTFGDVDA-PQLPDAKG--LL-RFLLGVTDEM 946 (998)
T ss_pred cc--ceEEEEeccCCc-hhhHHHhhcchhhhhhcC-CccccchhhhhhhhcccccC-CcCCcccc--hH-HHHhcCCHHH
Confidence 54 788877776665 445666555554444443 69999999999998766432 23344332 33 3343444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhC--CC-CeEEEecC
Q 013646 388 VEHFLKTVEGVTAKDIASVAQKLLS--SP-LTMASYGD 422 (439)
Q Consensus 388 ~~~~~~~i~~vt~~dv~~~a~~~l~--~~-~~~~v~g~ 422 (439)
.+...+.|-.++..|+.++|.+|+. +. ..+++.|+
T Consensus 947 kQarREqll~vSl~d~~~vae~yl~~~~~~~~vav~g~ 984 (998)
T KOG2019|consen 947 KQARREQLLAVSLKDFKAVAEAYLGVGDKGVAVAVAGP 984 (998)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccCCcceEEEeeCc
Confidence 7778899999999999999999998 33 33444454
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.2e-12 Score=118.88 Aligned_cols=329 Identities=13% Similarity=0.110 Sum_probs=214.2
Q ss_pred CHHHHHHHHHHcCCeeeeee-----cCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCh
Q 013646 65 SHLRIVREVEAIGGNVQASA-----SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNP 139 (439)
Q Consensus 65 ~~~~l~~~l~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~ 139 (439)
+.+++.+.+....++.+..+ -++.+.+++++..++.+...+++..++....|++..+.+..+..+.++..++.+.
T Consensus 607 s~~~v~~~~~s~~id~si~~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg 686 (1022)
T KOG0961|consen 607 SADDVAKHFTSDLIDHSIQVGVSGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDG 686 (1022)
T ss_pred hHHHHHHHHHhhhhhhhhcccccccchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCc
Confidence 45667666666555444443 3567889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhc-CCCCCC--CCCCChhhhccCCH----------HHHHHHHHhhCCCCCeEEEEcC-CC-HHHHHHHH
Q 013646 140 QSLLLEAIHSAGY-SGALAN--PLLAPESAINRLNS----------TLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVA 204 (439)
Q Consensus 140 ~~~~~~~l~~~~~-~~~~~~--~~~g~~~~l~~i~~----------~~l~~~~~~~~~~~~~~l~ivG-~~-~~~~~~~i 204 (439)
...+.......+| ...... ..+-.++-+.+|.. +.+....+-....+.+.+.++| ++ .+....-+
T Consensus 687 ~~vlss~~~~~lY~~~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~W 766 (1022)
T KOG0961|consen 687 CTVLSSAVASMLYGKNSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSW 766 (1022)
T ss_pred cEehHHHHHHHHhcccchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCc
Confidence 8888888888898 444333 22223333333331 2233333312235788899999 64 22222223
Q ss_pred HhhcCCCCCCCCCCC----------CCCcccCCce--EeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCC
Q 013646 205 EPLLSDLPSIHPREE----------PKSVYTGGDY--RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGG 272 (439)
Q Consensus 205 ~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~ 272 (439)
.........+.+... ....+.++.. .+..+ +...+.+..+.++..-| .+++.+...++.++|+-.
T Consensus 767 n~l~~~~~~~nP~~~f~~tf~~~~~~s~e~gsssk~~~I~~p-~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~~- 843 (1022)
T KOG0961|consen 767 NWLQADPRFGNPGHQFSATFEAGENVSLELGSSSKELLIGVP-GSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQC- 843 (1022)
T ss_pred hhhhcCcccCCchhhcccccccCcccceeccCCcceeEecCC-Cccccceeeeccccccc-CCcchhHHHHHHHHHHhc-
Confidence 322221111110000 0111222222 23333 23455666666665444 778999999999999974
Q ss_pred CCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhC-CCCCCHHHHH
Q 013646 273 SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT-PGEVDQVQLD 351 (439)
Q Consensus 273 ~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~~el~ 351 (439)
..++|+.+| ..|++|++..+..+-.+.-.+.|+...++. ++.+.-++.++++.. .|.+++.+|+
T Consensus 844 -----------eGPfW~~IR-G~GLAYGanm~~~~d~~~~~~~iyr~ad~~---kaye~~rdiV~~~vsG~~e~s~~~~e 908 (1022)
T KOG0961|consen 844 -----------EGPFWRAIR-GDGLAYGANMFVKPDRKQITLSIYRCADPA---KAYERTRDIVRKIVSGSGEISKAEFE 908 (1022)
T ss_pred -----------ccchhhhhc-ccchhccceeEEeccCCEEEEEeecCCcHH---HHHHHHHHHHHHHhcCceeecHHHhc
Confidence 479999999 479999998887766655566666666654 455555555555554 3479999999
Q ss_pred HHHHHHHHHHHHcccC-hHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCHHHHHHHHHHhhC
Q 013646 352 RAKQSTKSAILMNLES-RMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLS 412 (439)
Q Consensus 352 ~ak~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vt~~dv~~~a~~~l~ 412 (439)
-||...+......... .+..+.......+ .+.+ .....+.++|.+||.+|+.+..+.|+.
T Consensus 909 gAk~s~~~~~~~~Eng~~~~a~~~~~l~~~-~q~~~~fn~~~leri~nvT~~~~~~~~~~y~~ 970 (1022)
T KOG0961|consen 909 GAKRSTVFEMMKRENGTVSGAAKISILNNF-RQTPHPFNIDLLERIWNVTSEEMVKIGGPYLA 970 (1022)
T ss_pred cchHHHHHHHHHHhccceechHHHHHHHHH-HhcCCcccHHHHHHHHHhhHHHHHHhccccee
Confidence 9999998876554322 2222222222222 2333 456789999999999999999998863
No 22
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=98.20 E-value=7.8e-05 Score=73.04 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=117.9
Q ss_pred CCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcch-HHHHHHHhhCCCeeEEEeeccccCCcceEE
Q 013646 237 DQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYS-RLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 315 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s-~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~ 315 (439)
.+...+.+.+.....+.........+++..++..|+. +..+ -+.+.+- ..|....++.... ...+
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~--------~~~~~~i~~~~~-~~G~~~na~ts~d----~t~y- 101 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTT--------GLPSAELAEAFE-KLGGQLNAFTSFD----YTVY- 101 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCC--------CCChHHHHHHHH-HhcCeeeccccch----hhhh-
Confidence 3677777777754422233455677888888876521 0111 4555553 4554433332211 1222
Q ss_pred EEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 013646 316 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLK 393 (439)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 393 (439)
++.+.+++.+++++.+.+.+.+- .|++++|++-|..++.++....++|...+.......++++.+ .+..-..+
T Consensus 102 -~~~~l~~~~~~~l~llad~l~~p----~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e 176 (438)
T COG0612 102 -YLSVLPDNLDKALDLLADILLNP----TFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEE 176 (438)
T ss_pred -hhhhchhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHH
Confidence 23357778888888777776553 599999999999999999999999999988877777655444 23344579
Q ss_pred HHhcCCHHHHHHHHHHhhC-CCCeEEEecCCCC
Q 013646 394 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVIN 425 (439)
Q Consensus 394 ~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~~ 425 (439)
.|.++|++|+.++.++|.. ++.+++++|+...
T Consensus 177 ~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~ 209 (438)
T COG0612 177 SIEAITREDLKDFYQKWYQPDNMVLVVVGDVDA 209 (438)
T ss_pred HHHhCCHHHHHHHHHHhcCcCceEEEEecCCCH
Confidence 9999999999999999999 9999999998643
No 23
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.01 E-value=0.001 Score=67.74 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=110.8
Q ss_pred CCceEEEEEEecCCCCCCCc--chHHHHHHHHhhcCCCCCCCCCCCCCcch--HHHHHHHhhCCCeeEEEeeccccCCcc
Q 013646 237 DQLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYS--RLYRRVLNEFPQVQSFSAFSNIYNHSG 312 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~~--~~~~~~ll~~il~~~~~~~~~~~~~~~~s--~L~~~lR~~~g~~y~v~~~~~~~~~~~ 312 (439)
.+.+.+.+.++..+ ..++ .....+++..++..|+. .+.. .+.+.+ +..|..+++++. .-
T Consensus 19 ~p~vav~l~v~aGS--~~Ep~~~~GLAHfLEHMLFkGT~--------~~~~~~~i~~~l-e~lGG~lNA~Ts------~d 81 (696)
T TIGR02110 19 AKRAAALLRVAAGS--HDEPSAWPGLAHFLEHLLFLGGE--------RFQGDDRLMPWV-QRQGGQVNATTL------ER 81 (696)
T ss_pred CCEEEEEEEEeecc--CCCCCCCCcHHHHHHHHHhcCCC--------CCCcHHHHHHHH-HHhCCeEEEEEc------CC
Confidence 36677778787765 3332 35667888888876542 2222 244444 455655544432 23
Q ss_pred eEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC-C-CHHH
Q 013646 313 MFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-K-PVEH 390 (439)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 390 (439)
...+++.+.+++.+++++.+.+.+.+ ..++++++++.|..++.++....+++...+........+.+.+ . +..-
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~----P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iG 157 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLAR----PLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAG 157 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 45566778888888888766655543 2599999999999999999988888888776655554433322 1 1111
Q ss_pred HHHHHhc---CCHHHHHHHHHHhhC-CCCeEEEecCC
Q 013646 391 FLKTVEG---VTAKDIASVAQKLLS-SPLTMASYGDV 423 (439)
Q Consensus 391 ~~~~i~~---vt~~dv~~~a~~~l~-~~~~~~v~g~~ 423 (439)
..+.|.+ +|.+||+++.++++. ++.+++|+|+.
T Consensus 158 t~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdv 194 (696)
T TIGR02110 158 SRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQ 194 (696)
T ss_pred CHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCC
Confidence 2344554 559999999999998 99999999985
No 24
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.01 E-value=0.00015 Score=64.84 Aligned_cols=110 Identities=22% Similarity=0.187 Sum_probs=77.4
Q ss_pred CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhcc-CCCCCCCHHHHHHHHHHcCCeeeeeec-----------Cce
Q 013646 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREVEAIGGNVQASAS-----------REQ 88 (439)
Q Consensus 21 ~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~-~g~~~~~~~~l~~~l~~~g~~~~~~~~-----------~~~ 88 (439)
++...++++++.+.|+.+...+ +..-..-|+..++. .||+++++.++...+..+.|++++++. ..+
T Consensus 84 ~~~~TnGI~Y~~l~fdl~~l~~--e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~ 161 (248)
T PF08367_consen 84 HEQPTNGIVYVRLYFDLSDLPE--EDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPY 161 (248)
T ss_dssp EE---TTEEEEEEEEE-TTS-C--CCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEE
T ss_pred EEcCCCCeEEEEEEecCCCCCH--HHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEE
Confidence 6667788999999999996554 33444445555665 599999999999999998887776652 235
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 134 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~ 134 (439)
+.+++.++.++++++++++.+++.++.|++.+ +.++.+.+....
T Consensus 162 l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~--rl~~ll~~~~s~ 205 (248)
T PF08367_consen 162 LVISAKCLDEKLDEAFELLSEILTETDFDDKE--RLKELLKELKSD 205 (248)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HH--HHHHHHHHHHHH
T ss_pred EEEEEEeHhhhHHHHHHHHHHHHhccCCCcHH--HHHHHHHHHHHH
Confidence 78899999999999999999999999998653 555555444433
No 25
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=96.95 E-value=0.024 Score=53.42 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=95.6
Q ss_pred EEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCC-CHHHHHHHH
Q 013646 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKT-YVPEMVELL 107 (439)
Q Consensus 29 v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ll 107 (439)
+++++. ..|.-.+-.+-.|+|||+||++-. ++.. ..--||+|.+.+..|=+..... ...+++..+
T Consensus 20 IYlGIs-~FGFe~DI~~iLGiAHLLEHILIs----FD~~---------~F~ANASTaRsYMSFWC~si~g~~~~DAvrtl 85 (590)
T PF03410_consen 20 IYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSS---------KFLANASTARSYMSFWCKSIRGRTYIDAVRTL 85 (590)
T ss_pred eEEeec-ccccccchHHHHhHHHHHHHHeee----cchH---------HhhcccchhhhhhhhhhhhccCCChhHHHHHH
Confidence 444443 567777777889999999999953 2211 1134788888888887776654 356677777
Q ss_pred HHhhhC-----CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhh
Q 013646 108 IDCVRN-----PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAEN 182 (439)
Q Consensus 108 ~~~l~~-----~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~ 182 (439)
..+++. ..|+...++...+.+..|+-. .+-...+++.+.-..-+.-|.- |....+.+++ +++.....-
T Consensus 86 iSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDvLtfL~gGDLYNG---GRi~ML~~l~--~i~~mL~~R 158 (590)
T PF03410_consen 86 ISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDVLTFLGGGDLYNG---GRIDMLNNLN--DIRNMLSNR 158 (590)
T ss_pred HHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhcCCcccCC---chHHHHhhhH--HHHHHHHHH
Confidence 776655 336655555544444444332 2233445554433322444432 3444444332 333322221
Q ss_pred ---CCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCC
Q 013646 183 ---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 216 (439)
Q Consensus 183 ---~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~ 216 (439)
....|+++.|--++ +.+..++++.||++|.-|.
T Consensus 159 M~~I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 159 MHRIIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred HHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 22345555543387 5688899999999987553
No 26
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.032 Score=51.38 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=114.0
Q ss_pred CCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEE
Q 013646 236 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 315 (439)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~ 315 (439)
+...+.|.+.+...+..-+.+.....+++..+.-.|+. .|-...|-.+. -.+++..+.|...-...
T Consensus 51 ~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~-----------~Rs~~alElEi---eniGahLNAytSReqT~ 116 (467)
T KOG0960|consen 51 SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTK-----------NRSQAALELEI---ENIGAHLNAYTSREQTV 116 (467)
T ss_pred CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCC-----------cchhHHHHHHH---HHHHHHhccccccccee
Confidence 45777787776665532345667778888875443321 34433443221 12445555555444556
Q ss_pred EEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCC--CHHHHHH
Q 013646 316 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 393 (439)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 393 (439)
.++.+-+++++++++.+.+++++- .+.+.++++-|..++.+...-.++-............+.+.|. ...--.+
T Consensus 117 yyakal~~dv~kavdiLaDIlqns----~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~e 192 (467)
T KOG0960|consen 117 YYAKALSKDVPKAVDILADILQNS----KLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSE 192 (467)
T ss_pred eehhhccccchHHHHHHHHHHHhC----ccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhh
Confidence 677788888999998777765542 5999999999999988776655555555555555555566663 3445679
Q ss_pred HHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 394 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 394 ~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
.|++|+.+|++.+++..+. .+++++..|..+
T Consensus 193 nI~si~r~DL~~yi~thY~~~RmVlaaaGgV~ 224 (467)
T KOG0960|consen 193 NIKSISRADLKDYINTHYKASRMVLAAAGGVK 224 (467)
T ss_pred hhhhhhHHHHHHHHHhcccCccEEEEecCCcC
Confidence 9999999999999998877 777777777654
No 27
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=96.79 E-value=0.13 Score=41.97 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCCceEEEEEEecCCCCCCCc--chHHHHHHHHhhcCCCCCCCCCCCCCcch-HHHHHHHhhCCCeeEEEeeccccCCcc
Q 013646 236 GDQLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYS-RLYRRVLNEFPQVQSFSAFSNIYNHSG 312 (439)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~--~~~~~~ll~~il~~~~~~~~~~~~~~~~s-~L~~~lR~~~g~~y~v~~~~~~~~~~~ 312 (439)
..+.+.+.+.+++.. ..++ ......++..++..++. .+++ .+.+.+. ..|..+.+.+. ..
T Consensus 9 ~~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs~--------~~~~~~l~~~l~-~~G~~~~~~t~------~d 71 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGSK--------KYSSDELQEELE-SLGASFNASTS------RD 71 (149)
T ss_dssp TSSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBBS--------SSBHHHHHHHHH-HTTCEEEEEEE------SS
T ss_pred CCCEEEEEEEEeecc--CCCCCCCCchhhhhhhhcccccc--------hhhhhhhHHHhh-hhccccceEec------cc
Confidence 347888888888765 3332 24677888887776532 2333 4544554 56767655543 23
Q ss_pred eEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCC
Q 013646 313 MFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 384 (439)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (439)
.+.+.+.+.+++..++++.+.+.+..- .+++++|++.|..+..++....+++...+........+.+.
T Consensus 72 ~t~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~ 139 (149)
T PF00675_consen 72 STSYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGH 139 (149)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccC
Confidence 566677788888888888777766553 49999999999999999988888887777666665554443
No 28
>PHA03081 putative metalloprotease; Provisional
Probab=96.36 E-value=0.16 Score=48.12 Aligned_cols=166 Identities=14% Similarity=0.189 Sum_probs=95.8
Q ss_pred EEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCC-CHHHHHHHH
Q 013646 29 ASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKT-YVPEMVELL 107 (439)
Q Consensus 29 v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ll 107 (439)
+++++. ..|.-.+-.+-.|+|||+||++-. ++.. ..-.|++|.+.+..|-+..... ...+++..+
T Consensus 20 iy~gi~-~fgfe~di~~~lg~ahllehili~----fd~~---------~f~anast~r~ymsfwc~sirg~~y~DAvrtl 85 (595)
T PHA03081 20 IYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSS---------KFVANASTARSYMSFWCKSIRGRSYIDAIRTL 85 (595)
T ss_pred eEEeec-ccccccchHHHHhHHHHHHHHeee----cchH---------HhcccchhhhhhHhHhhHhhcCCchHHHHHHH
Confidence 444432 567777777889999999999853 1111 1134677888887776665543 357888888
Q ss_pred HHhhhCCC-----CCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhh
Q 013646 108 IDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAEN 182 (439)
Q Consensus 108 ~~~l~~~~-----~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~ 182 (439)
..++++.. |+...++...+.+..|+-. .+-...+++.+.-..-+.-|. .|....|.++ +++++....-
T Consensus 86 iSWFF~~~~Lr~~F~~~~ik~~ikELENEYYF--RnEvfHCmDvLTfL~gGDLYN---GGRi~ML~~l--~~i~~~L~~R 158 (595)
T PHA03081 86 ISWFFDNGKLKDNFSLSKIRNHIKELENEYYF--RNEVFHCMDVLTFLGGGDLYN---GGRIDMLDNL--NDVRDMLSNR 158 (595)
T ss_pred HHHhccCCccccccchhhHHHHHHHHhhhhhh--hhhhHHHHHHHHHhcCCcccC---CchHHHHhhh--HHHHHHHHHH
Confidence 88888765 4444444444333333332 223344555443332244443 2344444433 3344433332
Q ss_pred C---CCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCC
Q 013646 183 Y---TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 216 (439)
Q Consensus 183 ~---~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~ 216 (439)
. ...|+++.|--++ +.+..++++.||++|.-|.
T Consensus 159 M~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 159 MHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 2 2345555543387 5688899999999987553
No 29
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.1 Score=48.31 Aligned_cols=161 Identities=14% Similarity=0.017 Sum_probs=111.3
Q ss_pred eEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCH--------HH-----HH--HHHHHcCCeeeeeecCceEEEE
Q 013646 28 VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH--------LR-----IV--REVEAIGGNVQASASREQMGYS 92 (439)
Q Consensus 28 ~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~--------~~-----l~--~~l~~~g~~~~~~~~~~~~~~~ 92 (439)
..++.+.|-+-+..++ .-++--+-.++..|-+.+|+ .. +. .|+++..+.-+.+.+..-+++.
T Consensus 264 ltHv~lg~Eg~~~~de---D~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~ 340 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDE---DFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIY 340 (472)
T ss_pred eeeeeEeeccCCCCCh---hHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEe
Confidence 5677888877776665 23444444444444444442 11 11 2455556677888888999999
Q ss_pred EEecCCCHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcc
Q 013646 93 FDALKTYVPEMVELLIDCVRN--PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINR 169 (439)
Q Consensus 93 ~~~~~~~~~~~l~ll~~~l~~--~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l~~ 169 (439)
++++++...++++++..-+.+ ..+++++++|.|.++...+-+..++-.-.+.+.-++.+- +.. .++-.-.+.|++
T Consensus 341 ~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~r--k~p~e~~~~Ie~ 418 (472)
T KOG2067|consen 341 ASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGER--KPPDEFIKKIEQ 418 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCc--CCHHHHHHHHHh
Confidence 999999999999999776644 348999999999999998887766655455666666664 221 122223478899
Q ss_pred CCHHHHHHHHHhhCCCCCeEEEEcC
Q 013646 170 LNSTLLEEFVAENYTGPRMVLAASG 194 (439)
Q Consensus 170 i~~~~l~~~~~~~~~~~~~~l~ivG 194 (439)
++.+|+.++.++.+. ++.++.--|
T Consensus 419 lt~~DI~rva~kvlt-~~p~va~~G 442 (472)
T KOG2067|consen 419 LTPSDISRVASKVLT-GKPSVAAFG 442 (472)
T ss_pred cCHHHHHHHHHHHhc-CCceeccCC
Confidence 999999999999986 455666666
No 30
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=85.17 E-value=35 Score=32.31 Aligned_cols=169 Identities=10% Similarity=0.059 Sum_probs=98.1
Q ss_pred cCCCCCceEEEEEEecCCCCCCCcc--hHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCC
Q 013646 233 ADSGDQLTHFVLAFELPGGWHKDKD--AMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNH 310 (439)
Q Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~ 310 (439)
.+.+...+.+.+.+...+ +-.+. ....+++...-+.... + ..=++-.|+-.. .++.+....+
T Consensus 37 ~e~~~~is~l~l~~~AGS--RYe~~~~~G~sHllr~f~g~~Tq--------~--~sal~ivr~se~----~GG~Lss~~t 100 (429)
T KOG2583|consen 37 REAPTAISSLSLAFRAGS--RYEPADQQGLSHLLRNFVGRDTQ--------E--RSALKIVRESEQ----LGGTLSSTAT 100 (429)
T ss_pred ccCCCcceEEEEEEecCc--cCCccccccHHHHHHHhcccCcc--------c--cchhhhhhhhHh----hCceeeeeee
Confidence 343447889999998876 33333 2566777776654322 1 112234444322 1223333334
Q ss_pred cceEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH-HHHHHHHHHcccChHHHHHHHHHHHH-hcCCCCCH
Q 013646 311 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAK-QSTKSAILMNLESRMVVSEDIGRQVL-TYGERKPV 388 (439)
Q Consensus 311 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 388 (439)
.-.+.+.+.+..++.+-.+ +.+.++...+.|-+.|++..+ ..+.. ....+++...+....+... +.+.-.+.
T Consensus 101 Re~~~~tvt~lrd~~~~~l----~~L~~V~~~paFkPwEl~D~~~~ti~~--~l~~~t~~~~a~e~lH~aAfRngLgnsl 174 (429)
T KOG2583|consen 101 RELIGLTVTFLRDDLEYYL----SLLGDVLDAPAFKPWELEDVVLATIDA--DLAYQTPYTIAIEQLHAAAFRNGLGNSL 174 (429)
T ss_pred cceEEEEEEEecccHHHHH----HHHHHhhcccCcCchhhhhhhhhhhHH--HhhhcChHHHHHHHHHHHHHhcccCCcc
Confidence 4567777777777665444 445555554348889998888 44333 3445577666654444333 23322111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCC
Q 013646 389 EHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 423 (439)
Q Consensus 389 ~~~~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~ 423 (439)
.--.-.+.+++.+||..|+.+.|. .+..++-+|+.
T Consensus 175 Y~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd 210 (429)
T KOG2583|consen 175 YSPGYQVGSVSSSELKDFAAKHFVKGNAVLVGVNVD 210 (429)
T ss_pred cCCcccccCccHHHHHHHHHHHhhccceEEEecCCC
Confidence 111136899999999999999887 77777777654
No 31
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=84.97 E-value=1.8 Score=24.48 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.7
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHH
Q 013646 334 RELISVATPGEVDQVQLDRAKQSTK 358 (439)
Q Consensus 334 ~~~~~l~~~g~i~~~el~~ak~~l~ 358 (439)
+.+..+.+.|.||++|+++.|+.++
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4456666667899999999998865
No 32
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=75.87 E-value=58 Score=29.02 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=67.4
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhC-CCeeEEEeeccc---cCCcce
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEF-PQVQSFSAFSNI---YNHSGM 313 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~-g~~y~v~~~~~~---~~~~~~ 313 (439)
+-+|+.+.|+.+. ....+...+.++..+|+.-+. ... -...|-..+.... |+..++.+.... ..-...
T Consensus 90 GI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT-----~~~-sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~ 161 (248)
T PF08367_consen 90 GIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT-----KNY-SYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPY 161 (248)
T ss_dssp TEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B-----SSS--HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEE
T ss_pred CeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC-----CCC-CHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEE
Confidence 6789999999987 677888889999999997432 111 1223444443333 344444333322 122356
Q ss_pred EEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHHH
Q 013646 314 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQ-LDRAKQSTKSAI 361 (439)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~e-l~~ak~~l~~~~ 361 (439)
|.+.+.+-.++++++++.+.+.+.+. .|++.+ +..........+
T Consensus 162 l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~ 206 (248)
T PF08367_consen 162 LVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDM 206 (248)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHH
T ss_pred EEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHH
Confidence 77788888999999999988888664 466554 444444444443
No 33
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=75.68 E-value=4.9 Score=33.27 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=60.5
Q ss_pred CeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHH-HcCC--eeeeee----cCceEEEEEEecCCC
Q 013646 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGG--NVQASA----SREQMGYSFDALKTY 99 (439)
Q Consensus 27 ~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~-~~g~--~~~~~~----~~~~~~~~~~~~~~~ 99 (439)
+...+.+.+.+..... ........++.+++..+.. ..+...+. ..+. ++++.. +...+.+.+.+.+++
T Consensus 78 ~~~~v~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~----s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~ 152 (184)
T PF05193_consen 78 SQSIVSIAFPGPPIKD-SKDYFALNLLSSLLGNGMS----SRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPEN 152 (184)
T ss_dssp SSEEEEEEEEEEETGT-STTHHHHHHHHHHHHCSTT----SHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGG
T ss_pred cccccccccccccccc-cchhhHHHHHHHHHhcCcc----chhHHHHHhccccceEEEeeeeccccceEEEEEEEcCccc
Confidence 5666677776666522 2356778888999876633 24555555 4443 222222 224467777787778
Q ss_pred HHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 013646 100 VPEMVELLIDCVRN---PVFLDWEVNEQLTKV 128 (439)
Q Consensus 100 ~~~~l~ll~~~l~~---~~~~~~~~~~~k~~~ 128 (439)
+..+++.+.+.+.. -.+++++|++.|+.+
T Consensus 153 ~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 153 LDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 87777777666643 349999999988753
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=44.01 E-value=1.3e+02 Score=22.04 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHhhhC---CC-CCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcC-CCCCHHHHHHHHh
Q 013646 322 SDFVSKAIDLAARELISVAT---PG-EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG-ERKPVEHFLKTVE 396 (439)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~---~g-~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 396 (439)
|..+..++..+.+.+....+ +| .|+.+||..+-............+...+ ..+...+=..+ ...+.+++...+.
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v-~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLV-DKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHH-HHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 34567788888888877762 23 3899999887766443322222233333 33333322122 2256777777776
Q ss_pred cCC
Q 013646 397 GVT 399 (439)
Q Consensus 397 ~vt 399 (439)
.++
T Consensus 81 ~l~ 83 (93)
T cd05026 81 ALT 83 (93)
T ss_pred HHH
Confidence 654
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=43.46 E-value=1.3e+02 Score=21.90 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhhh-CCC---CCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCC-CCCHHHHHHHHhcC
Q 013646 324 FVSKAIDLAARELISVA-TPG---EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGV 398 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~l~-~~g---~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v 398 (439)
.+.+++..+...+.... ++| .++.+||...-......+.....++..+- .+....-..++ ..+.+++...+..+
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~-~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLD-RMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHH-HHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35677777788777733 322 49999998887776655554333333333 33332211222 25677887777666
Q ss_pred CH
Q 013646 399 TA 400 (439)
Q Consensus 399 t~ 400 (439)
+.
T Consensus 82 ~~ 83 (89)
T cd05023 82 AV 83 (89)
T ss_pred HH
Confidence 43
No 36
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=41.01 E-value=1.4e+02 Score=21.85 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHH
Q 013646 325 VSKAIDLAARELISVAT-PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAK 401 (439)
Q Consensus 325 ~~~~~~~~~~~~~~l~~-~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~ 401 (439)
+..++..++..+.+... .+.++..||......-+..+.....++...-..+-..-...+...+..++...|..++..
T Consensus 3 LE~ai~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 3 LEHSMEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 56677777788877753 236999999999988888877776666544333322222122225788888888777654
No 37
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=40.38 E-value=1.4e+02 Score=21.54 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHh--cCCCCCHHHHHHHHhcCCHHH
Q 013646 326 SKAIDLAARELISVAT-PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT--YGERKPVEHFLKTVEGVTAKD 402 (439)
Q Consensus 326 ~~~~~~~~~~~~~l~~-~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~vt~~d 402 (439)
....+.+-.....+.. -| +++.++++.+.... .+.......+...+.. ++.......+.+++.++...|
T Consensus 6 ~~ia~~LG~~Wk~lar~LG-lse~~Id~Ie~~~~-------~dl~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~d 77 (86)
T cd08779 6 LSIAGRLGLDWQAIGLHLG-LSYRELQRIKYNNR-------DDLDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQD 77 (86)
T ss_pred HHHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHCc-------cCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHHH
Confidence 3334444444444432 26 99999999977632 2222233333322221 233345678889999999999
Q ss_pred HHHHHHHh
Q 013646 403 IASVAQKL 410 (439)
Q Consensus 403 v~~~a~~~ 410 (439)
+.+-++..
T Consensus 78 lae~l~~~ 85 (86)
T cd08779 78 LADEVRAV 85 (86)
T ss_pred HHHHHHhh
Confidence 98877654
No 38
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=40.27 E-value=97 Score=19.69 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHHHHHHhhh
Q 013646 67 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVR 112 (439)
Q Consensus 67 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~ 112 (439)
..+..+++..++.+.-..-.+...+.+.++.++.+.+.+.|.++..
T Consensus 9 ~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t~ 54 (56)
T PF09186_consen 9 GKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLTS 54 (56)
T ss_dssp HHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHcC
Confidence 4577889999998766666666999999999999999999887643
No 39
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=38.83 E-value=3.1e+02 Score=26.12 Aligned_cols=45 Identities=29% Similarity=0.450 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCC--------CCCCCCCCcchHHHHHHHhhCC----CeeEEEee
Q 013646 260 TLTVLQMLLGGGGSF--------SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAF 304 (439)
Q Consensus 260 ~~~ll~~il~~~~~~--------~~~~~~~~~~s~L~~~lR~~~g----~~y~v~~~ 304 (439)
.+.++..=..+..+| -+||-|+|++|.|.++|++... .+|+|+.+
T Consensus 118 ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn 174 (448)
T KOG1374|consen 118 IMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPN 174 (448)
T ss_pred HHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccC
Confidence 444454444555555 5799999999999999998653 46776544
No 40
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=32.59 E-value=88 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=32.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHhhC--CCCeEEEecCC
Q 013646 387 PVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDV 423 (439)
Q Consensus 387 ~~~~~~~~i~~vt~~dv~~~a~~~l~--~~~~~~v~g~~ 423 (439)
+..++.+.+.-++.+++++.+.+.|. +.-+|+..|..
T Consensus 2 YpsdFAs~L~vLsL~e~r~aIh~LLd~Rd~~~WMLFGTL 40 (153)
T PF08756_consen 2 YPSDFASNLEVLSLDEMREAIHRLLDIRDPNVWMLFGTL 40 (153)
T ss_pred chhHhhhhCccCCHHHHHHHHHHHHhccCCCeeEEeccc
Confidence 35678889999999999999999998 77889999964
No 41
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=30.72 E-value=1.5e+02 Score=19.31 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCeeeeee-cCceEEEEEEecCCCHHHHHHHHHHhhh
Q 013646 68 RIVREVEAIGGNVQASA-SREQMGYSFDALKTYVPEMVELLIDCVR 112 (439)
Q Consensus 68 ~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ll~~~l~ 112 (439)
.+.+.|...|.++.... +.....+++.++.++.+.+++.|++.+.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 45666778888765443 2244888888898999999999888765
No 42
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=29.61 E-value=1.7e+02 Score=19.55 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHHHHHH
Q 013646 69 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 109 (439)
Q Consensus 69 l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~ 109 (439)
+...|...|+++..-. .+...++-++.++++++++.|.+
T Consensus 27 i~~~La~~~I~i~~is--S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 27 IFSALAEAGINIFMIS--SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHTTS-ECEEE--ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEE--EeeeEEEEEeHHHHHHHHHHhcC
Confidence 3444678888876655 56677788889999999998864
No 43
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.41 E-value=1.7e+02 Score=19.14 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCeeeeeec-CceEEEEEEecCCCHHHHHHHHHHhhhC
Q 013646 68 RIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCVRN 113 (439)
Q Consensus 68 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ll~~~l~~ 113 (439)
.+...|...|.++..... .....+++..+.++.+.++..+++.+.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 455667777777654432 2347788888889999999999887753
No 44
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=28.69 E-value=2.5e+02 Score=20.97 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=25.5
Q ss_pred hHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeCh-----hhHHHHHHHHHHHHHhhhC
Q 013646 285 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELISVAT 341 (439)
Q Consensus 285 s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~ 341 (439)
+.|...|++..+--+. +|..+..-.+...+++.+.. +.+.+++..+.+.+..+.+
T Consensus 30 NlL~~~L~~d~~V~~a--~Y~i~HP~~~~~~i~Ikt~~~~dp~~aL~~A~~~i~~~~~~l~~ 89 (99)
T COG1761 30 NLLREELLKDEDVEFA--AYSIPHPLIDNPKIRIKTKGGVDPKEALKRAARKILKDLEELLD 89 (99)
T ss_pred HHHHHHHhCCCCeeEE--EEeCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555553222 23333333334444554433 3345556666666666554
No 45
>COG5023 Tubulin [Cytoskeleton]
Probab=28.64 E-value=48 Score=31.08 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=49.6
Q ss_pred CCCCCCCCcchHHHHHHHhhCC----CeeEEEeeccccCCcceEEEEEeeChhhHHHHH---------------HHHHHH
Q 013646 275 SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAI---------------DLAARE 335 (439)
Q Consensus 275 ~~~~~~~~~~s~L~~~lR~~~g----~~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------~~~~~~ 335 (439)
.+||-|+||++.|-.+||++.+ +.|+|+-. +.. . .+.+.|.+..-++ +.+...
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~--p~~--S----d~VVePYNsvLt~h~l~ensD~tf~~DNeal~di 210 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPA--PKV--S----DVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDI 210 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccC--Ccc--C----cceecccHHHHHHHHHHhcCCceEEechHHHHHH
Confidence 5788999999999999999865 45665421 110 0 1111221111110 222233
Q ss_pred HH-hhhCCCCCCHHHHHHHHHHHHHHHHHcccChHH
Q 013646 336 LI-SVATPGEVDQVQLDRAKQSTKSAILMNLESRMV 370 (439)
Q Consensus 336 ~~-~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~ 370 (439)
.. .+.-+ .++=+++.+.+.++.........=|.+
T Consensus 211 ~~~~L~i~-~P~y~~lN~LIs~VmSsvTtslRfpG~ 245 (443)
T COG5023 211 CRRNLRIQ-NPSYDDLNQLISTVMSSVTTSLRFPGY 245 (443)
T ss_pred HHHhcCCC-CCChHHHHHHHHHHHHhhhheeecCcc
Confidence 33 33333 488888999888888777665544444
No 46
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.52 E-value=1.2e+02 Score=27.38 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=32.2
Q ss_pred hhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHh
Q 013646 166 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 166 ~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
-|++++++++++..+..-.++++.+-++| ++++.+..+...
T Consensus 213 mLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 213 MLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred EecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 45678888888888887556788888888 888888877654
No 47
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=27.46 E-value=1.7e+02 Score=18.71 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHHHHHHhh
Q 013646 68 RIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 111 (439)
Q Consensus 68 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l 111 (439)
++...+...++++...... ...+++..+.++.+.+++.+++.+
T Consensus 19 ~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 19 KMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 4666678888877666543 377888888888888888887765
No 48
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=26.58 E-value=1.6e+02 Score=25.96 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHHHhhC--CCCeEEEecCCCCCCCHHHHHhhhhc
Q 013646 396 EGVTAKDIASVAQKLLS--SPLTMASYGDVINVPSYDAVSSKFKS 438 (439)
Q Consensus 396 ~~vt~~dv~~~a~~~l~--~~~~~~v~g~~~~~~~~~~~~~~~~~ 438 (439)
.+++++++.++..+.+. +...+++++|...+|+.+.-++.++.
T Consensus 41 aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~ 85 (277)
T PRK00994 41 AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKA 85 (277)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHh
Confidence 46889999988888864 77888889999999999988887763
No 49
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=26.52 E-value=2.4e+02 Score=20.05 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.1
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHHHHH
Q 013646 334 RELISVATPGEVDQVQLDRAKQSTKSAILM 363 (439)
Q Consensus 334 ~~~~~l~~~g~i~~~el~~ak~~l~~~~~~ 363 (439)
..+......|.||++++++....++..+..
T Consensus 38 ~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 38 AELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 344444445689999999999998877654
No 50
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.61 E-value=1.9e+02 Score=18.52 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHHHHHHhh
Q 013646 67 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 111 (439)
Q Consensus 67 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l 111 (439)
..+...|...++++...... ...+++..+.++.+.+...+++.+
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 18 AKMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 34666678888877666543 367788888888888888887765
No 51
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=24.57 E-value=62 Score=26.93 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=32.6
Q ss_pred hhhccCCHHHHHHHHHhhC-CCCCeEEEEcC-CCHHHHHHHHHh
Q 013646 165 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 165 ~~l~~i~~~~l~~~~~~~~-~~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
=.+++.+.+++++..+..- .+.++.+.++| ++++.+.++.+.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 4567789999999998543 24569999999 999999988764
No 52
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.31 E-value=94 Score=27.29 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHHhh-C-CCCeEEEecCCCCCCCHHHHHhhhh
Q 013646 396 EGVTAKDIASVAQKLL-S-SPLTMASYGDVINVPSYDAVSSKFK 437 (439)
Q Consensus 396 ~~vt~~dv~~~a~~~l-~-~~~~~~v~g~~~~~~~~~~~~~~~~ 437 (439)
.+++++++.++..+.+ . +...+++++|-...|..+..++.++
T Consensus 40 aKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~ 83 (276)
T PF01993_consen 40 AKMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLS 83 (276)
T ss_dssp T--SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHH
Confidence 4588999999998887 4 7888889999999999988888774
No 53
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=23.30 E-value=1.5e+02 Score=27.28 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.8
Q ss_pred hhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHh
Q 013646 166 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 166 ~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
.+++++.+++++..+.. +.++.+-++| ++++.+.++.+.
T Consensus 233 ~LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 233 MLDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred EeCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 45677889999988853 4588899999 999988887654
No 54
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.72 E-value=1.5e+02 Score=27.19 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=29.0
Q ss_pred hhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHh
Q 013646 166 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 166 ~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
.+++++++++++..+.. +++..+-.+| ++++.+.++...
T Consensus 222 mLDnmspe~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 222 MLDNMSLEQIEQAITLI--AGRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred EECCCCHHHHHHHHHHh--cCceEEEEECCCCHHHHHHHHhc
Confidence 45677888888888743 4577888888 888888877654
No 55
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.06 E-value=1.7e+02 Score=26.86 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=27.5
Q ss_pred hhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHh
Q 013646 166 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 166 ~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
.+++++++++++..+.. +.++.+-.+| ++++.+.++...
T Consensus 230 mLDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 230 LLDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred EECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 34566778888877643 4577788888 888887777653
No 56
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.83 E-value=1.6e+02 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=30.9
Q ss_pred hhccCCHHHHHHHHHhhCC---CCCeEEEEcC-CCHHHHHHHHHh
Q 013646 166 AINRLNSTLLEEFVAENYT---GPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 166 ~l~~i~~~~l~~~~~~~~~---~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
.+++++.+++++..+..-. +.++.+.++| ++++.+.++.+.
T Consensus 207 ~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 207 MLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred EECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 4567788888887775422 3578899999 999999887764
No 57
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.38 E-value=1.3e+02 Score=25.66 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHh
Q 013646 168 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 206 (439)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~ 206 (439)
.=|+.+++.++.+. +|.++.++++| --++++++.++-
T Consensus 131 gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 131 GYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCch
Confidence 34678999999986 79999999999 777888876653
No 58
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.68 E-value=2.5e+02 Score=18.18 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCeeeeeec-CceEEEEEEecCCCHHHHHHHHHHhh
Q 013646 68 RIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCV 111 (439)
Q Consensus 68 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ll~~~l 111 (439)
.+.+.+...+.++..... .....+++..+.++.+.+++.|++.+
T Consensus 20 ~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~ 64 (66)
T cd04924 20 RVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEF 64 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHh
Confidence 455667778877654432 23377888888899999999988765
No 59
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=91 Score=24.81 Aligned_cols=89 Identities=10% Similarity=0.190 Sum_probs=46.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCCCCCCh-h
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLAPE-S 165 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~g~~-~ 165 (439)
.++..-+|++++..+=.++...+.+ +..+++......+|.+.-..+ ++..-+...+ ...+-...+-++ .
T Consensus 48 ~~~DwiGPPD~~SnlRp~v~~y~de----Es~Ler~lRl~R~E~~~WN~d----FWa~hN~~F~~eKedFi~~kL~~EsG 119 (178)
T KOG4094|consen 48 RRFDWIGPPDNLSNLRPIVLRYVDE----ESELERQLRLAREELNQWNSD----FWAEHNQLFDREKEDFIERKLQQESG 119 (178)
T ss_pred cccCccCCchhhhhhhHHHHHhCCc----ccHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 4455667877777666666555543 567777776666666653211 1111111111 000000000011 2
Q ss_pred hhccCCHHHHHHHHHhhCCC
Q 013646 166 AINRLNSTLLEEFVAENYTG 185 (439)
Q Consensus 166 ~l~~i~~~~l~~~~~~~~~~ 185 (439)
.+..++.+++-+||+.++..
T Consensus 120 ~~~~vsA~ems~FYk~FL~k 139 (178)
T KOG4094|consen 120 RLEHVSANEMSEFYKDFLNK 139 (178)
T ss_pred cccccCHHHHHHHHHHHHhh
Confidence 35678899999999987654
Done!