Query 013646
Match_columns 439
No_of_seqs 154 out of 1312
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 1.1E-59 3.8E-64 463.6 50.6 424 10-437 4-451 (475)
2 3eoq_A Putative zinc protease; 100.0 1.9E-59 6.5E-64 453.0 46.2 392 15-424 4-405 (406)
3 3hdi_A Processing protease; CA 100.0 5.2E-59 1.8E-63 452.2 49.1 398 15-429 4-410 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 6.6E-57 2.2E-61 440.4 48.9 422 9-437 4-442 (443)
5 1pp9_A Ubiquinol-cytochrome C 100.0 3.6E-57 1.2E-61 442.5 46.6 419 9-436 11-441 (446)
6 3ami_A Zinc peptidase; alpha/b 100.0 2.4E-56 8.1E-61 436.5 43.7 408 15-436 9-435 (445)
7 1pp9_B Ubiquinol-cytochrome C 100.0 2.6E-54 8.8E-59 421.6 48.8 407 15-431 26-438 (439)
8 3gwb_A Peptidase M16 inactive 100.0 1.6E-54 5.5E-59 422.5 43.0 398 10-424 12-422 (434)
9 3amj_B Zinc peptidase inactive 100.0 1.8E-53 6.2E-58 413.8 42.6 396 15-427 6-418 (424)
10 3cx5_A Cytochrome B-C1 complex 100.0 1.9E-52 6.4E-57 407.5 44.2 406 15-436 3-426 (431)
11 3d3y_A Uncharacterized protein 100.0 4.5E-48 1.5E-52 375.9 41.2 388 16-424 6-423 (425)
12 3go9_A Insulinase family prote 100.0 1E-48 3.5E-53 385.5 36.4 398 10-435 24-460 (492)
13 1q2l_A Protease III; hydrolase 100.0 2.6E-47 8.7E-52 405.6 37.5 394 15-425 23-441 (939)
14 3cww_A Insulysin, insulin-degr 100.0 1.9E-44 6.6E-49 385.3 35.6 392 15-423 37-455 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 5.3E-44 1.8E-48 381.8 33.2 392 15-426 40-487 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 2.6E-43 8.9E-48 372.2 33.8 381 33-426 111-590 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 5.1E-42 1.7E-46 324.8 25.4 341 22-431 6-351 (352)
18 2fge_A Atprep2;, zinc metallop 100.0 6.2E-34 2.1E-38 304.1 23.3 380 21-429 567-981 (995)
19 1q2l_A Protease III; hydrolase 100.0 1.5E-32 5E-37 292.2 28.8 371 27-424 523-907 (939)
20 3cww_A Insulysin, insulin-degr 100.0 3E-30 1E-34 275.7 29.2 375 26-426 540-936 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 9.9E-31 3.4E-35 276.6 20.6 374 21-423 732-1173(1193)
22 3ih6_A Putative zinc protease; 99.9 5.5E-24 1.9E-28 183.6 21.4 171 238-424 23-195 (197)
23 3ih6_A Putative zinc protease; 98.4 6.2E-06 2.1E-10 70.0 15.3 161 26-194 22-192 (197)
24 3hdi_A Processing protease; CA 98.2 0.0001 3.4E-09 70.5 20.1 166 238-424 22-193 (421)
25 3amj_B Zinc peptidase inactive 98.2 5.1E-05 1.7E-09 72.6 17.5 171 238-424 24-199 (424)
26 3eoq_A Putative zinc protease; 98.2 0.00015 5E-09 69.0 20.2 165 237-423 21-191 (406)
27 3cx5_B Cytochrome B-C1 complex 98.1 8.9E-05 3E-09 69.0 17.3 162 238-421 11-175 (352)
28 1pp9_A Ubiquinol-cytochrome C 98.1 0.00013 4.4E-09 70.3 18.6 167 238-424 33-204 (446)
29 1hr6_A Alpha-MPP, mitochondria 98.1 0.00012 4.1E-09 71.2 18.5 167 237-423 24-194 (475)
30 3cx5_A Cytochrome B-C1 complex 98.1 0.00018 6.3E-09 68.8 18.7 165 238-424 21-189 (431)
31 1pp9_B Ubiquinol-cytochrome C 98.1 0.00024 8.1E-09 68.2 19.5 167 236-422 41-211 (439)
32 1hr6_B Beta-MPP, mitochondrial 98.1 0.00036 1.2E-08 67.1 20.2 166 238-424 27-198 (443)
33 3gwb_A Peptidase M16 inactive 98.1 0.00013 4.4E-09 70.0 16.8 166 238-424 34-206 (434)
34 3ami_A Zinc peptidase; alpha/b 98.0 0.00027 9.1E-09 68.1 18.8 167 237-423 26-198 (445)
35 3d3y_A Uncharacterized protein 98.0 0.00026 8.8E-09 67.6 17.8 173 238-424 23-210 (425)
36 3go9_A Insulinase family prote 96.4 0.015 5.2E-07 56.5 10.4 174 25-207 263-464 (492)
37 1g6u_A Domain swapped dimer; d 45.8 32 0.0011 19.4 3.5 26 330-356 3-28 (48)
38 4drw_A Protein S100-A10/annexi 42.3 25 0.00085 26.3 3.8 79 322-400 7-86 (121)
39 3n22_A Protein S100-A2; EF-han 30.5 1.4E+02 0.0048 20.9 7.2 75 324-399 5-84 (98)
40 3lh2_S 4E10_1VI7A_S0_002_N (T8 28.4 1.2E+02 0.0042 20.0 5.2 47 67-113 20-66 (76)
41 3ov5_A VIRB7 (XAC2622), unchar 27.3 59 0.002 21.9 3.1 43 152-194 32-74 (85)
42 4eto_A Protein S100-A4; calciu 27.0 1.3E+02 0.0046 20.7 5.4 74 325-399 5-83 (93)
43 1use_A VAsp, vasodilator-stimu 25.8 1.1E+02 0.0037 18.1 4.2 21 115-135 3-23 (45)
44 2l4w_A Uncharacterized protein 24.8 55 0.0019 23.5 2.8 43 152-194 62-104 (120)
45 3zwh_A Protein S100-A4; Ca-bin 21.0 1.8E+02 0.0062 20.6 5.2 75 324-399 7-86 (104)
46 3nxa_A Protein S100-A16; S100 20.9 54 0.0019 23.2 2.3 76 323-399 4-85 (100)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=1.1e-59 Score=463.56 Aligned_cols=424 Identities=33% Similarity=0.527 Sum_probs=380.8
Q ss_pred hhhheeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeee
Q 013646 10 LLYQMVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 84 (439)
Q Consensus 10 ~~~~~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~ 84 (439)
|.++ .++|+| ..+.+.|.+++.+++++|+++|++++.|++||++||+|+||++++..++.+.++..|+.+|++|
T Consensus 4 ~~~~-~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t 82 (475)
T 1hr6_A 4 DNFK-LSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS 82 (475)
T ss_dssp TCCE-EEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred CCce-EEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 4445 689999 4455678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 013646 85 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 163 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~ 163 (439)
+.++|+|.+++++++++.+|+++.+++.+|.|++++|+++|+.+++|++...++|...+.+.+...+| ++||+++..|+
T Consensus 83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (475)
T 1hr6_A 83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICP 162 (475)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred ccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999 99999999999
Q ss_pred hhhhccCCHHHHHHHHHhhCCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCC-CCCCCcccCCceEeecC----CCCC
Q 013646 164 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQ 238 (439)
Q Consensus 164 ~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~ 238 (439)
.+.|.+++.++|++||+++|.|+|++++|+|++++++.++++++|+.|+.+..+ ..+.+.+.+....+... ....
T Consensus 163 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (475)
T 1hr6_A 163 RGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPE 242 (475)
T ss_dssp GGGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCC
T ss_pred HHHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCcc
Confidence 999999999999999999999999999999999999999999999999865433 11122333333333311 2347
Q ss_pred ceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEE
Q 013646 239 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 318 (439)
Q Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~ 318 (439)
++.+.++|++++ ..+++.+++.|++.+||++++|+.||+|++++++||+.||++.|++|+++++...+.+.|.|.+++
T Consensus 243 ~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~ 320 (475)
T 1hr6_A 243 LFHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISL 320 (475)
T ss_dssp CEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEE
T ss_pred ceEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEE
Confidence 889999999876 578899999999999999999999999999999999999999999999999888777889999999
Q ss_pred eeChhhHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 013646 319 TTGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV 395 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~---~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (439)
.++|+++.++++.+.+++.++.+ .| ++++||+++|+.++.++....+++..++..++..++..+.+.+..++.+.|
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 399 (475)
T 1hr6_A 321 SCIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKI 399 (475)
T ss_dssp EECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999987 66 999999999999999999999999999988888665466666688899999
Q ss_pred hcCCHHHHHHHHHHhhCC----------CCeEEEecCCCCCCCHHHHHhhhh
Q 013646 396 EGVTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK 437 (439)
Q Consensus 396 ~~vt~~dv~~~a~~~l~~----------~~~~~v~g~~~~~~~~~~~~~~~~ 437 (439)
.+||++||++++++++.. +.+++++||...+|+.+++...+.
T Consensus 400 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 400 EDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp HTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 999999999999999974 789999999989999999987764
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-59 Score=453.01 Aligned_cols=392 Identities=19% Similarity=0.214 Sum_probs=356.5
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
..+|+| .+++..|.+++.+++++|+++|++++.|++||++||+++||++++..++.+.++.+|+.+|++|+.++
T Consensus 4 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~ 83 (406)
T 3eoq_A 4 EAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEA 83 (406)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSC
T ss_pred eEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCe
Confidence 578999 56666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 167 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l 167 (439)
|+|.+++++++++.+|+++.+++ +|.|++++|+++|+.+++|++...++|...+.+.+.+.+| +|||+++..|+.++|
T Consensus 84 t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i 162 (406)
T 3eoq_A 84 TVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESI 162 (406)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCCC-cccCCceEeecCCCCCceEEEEE
Q 013646 168 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS-VYTGGDYRCQADSGDQLTHFVLA 245 (439)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ 245 (439)
.+++.++|++||+++|.|+||+++|+| ++++++.++++++|+.|+..+.+....+ ...+....+..+ ...++.+.++
T Consensus 163 ~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~~~~ 241 (406)
T 3eoq_A 163 TALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYE-KARALYLVAL 241 (406)
T ss_dssp HHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECT-TCSSEEEEEE
T ss_pred hhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecC-CccceEEEEE
Confidence 999999999999999999999999999 9999999999999999986544322111 111222223332 2379999999
Q ss_pred EecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeChhhH
Q 013646 246 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~ 325 (439)
|+++. ..+++.+++.|++.+||++ ++|+||+.||+ .|++|++++++..+.+.|.|.+++.++|++.
T Consensus 242 ~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 242 FPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp EECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred ecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 99987 6888999999999999986 44999999999 9999999999888888999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Q 013646 326 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIAS 405 (439)
Q Consensus 326 ~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 405 (439)
.++++.+.++++++.++| ++++||+++|+.++.++....+++..++..++...+.++.+...+++.+.|++||++||++
T Consensus 308 ~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNA 386 (406)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHH
Confidence 999999999999998877 9999999999999999999999999999999888877777888999999999999999999
Q ss_pred HHHHhhC-CCCeEEEecCCC
Q 013646 406 VAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 406 ~a~~~l~-~~~~~~v~g~~~ 424 (439)
+|++||. ++. ++++||..
T Consensus 387 ~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 387 LLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHTTTTTSCE-EEEEECCC
T ss_pred HHHHhcCcccE-EEEECCCC
Confidence 9999998 555 99999863
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=5.2e-59 Score=452.24 Aligned_cols=398 Identities=24% Similarity=0.385 Sum_probs=363.3
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
..+|+| .+++..+.+++.++|++|+++|++++.|++||++||+++||++++..++.+.++.+|+++|++|+.++
T Consensus 4 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~ 83 (421)
T 3hdi_A 4 TMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEY 83 (421)
T ss_dssp EEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccce
Confidence 578999 66666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhhh
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 167 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~l 167 (439)
|+|.+++++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+.+.+| ++||+++..|+.+.|
T Consensus 84 t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l 163 (421)
T 3hdi_A 84 TCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETL 163 (421)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC-CCCcccCCceEeecCCCCCceEEEEE
Q 013646 168 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVYTGGDYRCQADSGDQLTHFVLA 245 (439)
Q Consensus 168 ~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (439)
.+++.++|++||+++|.|+|++++|+| ++ +++.++++++|+.|+.++.+.. ..+.+.+.......+. .++.+.++
T Consensus 164 ~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~~~ 240 (421)
T 3hdi_A 164 NSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLCLG 240 (421)
T ss_dssp HHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEEEE
T ss_pred HhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEEEE
Confidence 999999999999999999999999999 99 9999999999999987654322 2222222222333334 89999999
Q ss_pred EecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeChhhH
Q 013646 246 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~ 325 (439)
|+++. .++++.+++.|++.+||++ ++++||++||++.|++|+++++...+.+.|.|.+++.++|++.
T Consensus 241 ~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (421)
T 3hdi_A 241 YPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQL 307 (421)
T ss_dssp EECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGH
T ss_pred EecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHH
Confidence 99986 6889999999999999986 4599999999999999999998888888999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Q 013646 326 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIAS 405 (439)
Q Consensus 326 ~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 405 (439)
.++++.+.++++++++.| ++++||+++|..++.++....+++..++..++...+..+.+.+.+++.+.|.+||++||++
T Consensus 308 ~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (421)
T 3hdi_A 308 DDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSR 386 (421)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887 9999999999999999999999999999888776665677778899999999999999999
Q ss_pred HHHHhhCCCCeEEEecCCCCCCCH
Q 013646 406 VAQKLLSSPLTMASYGDVINVPSY 429 (439)
Q Consensus 406 ~a~~~l~~~~~~~v~g~~~~~~~~ 429 (439)
+|++|+.++.+++++||...+|+.
T Consensus 387 ~a~~~~~~~~~~~vvgp~~~ip~~ 410 (421)
T 3hdi_A 387 LAKILLSASPSISLINANGELPKA 410 (421)
T ss_dssp HHHHHTTSCCEEEEEESSCSCCSC
T ss_pred HHHHHcccCcEEEEECchhcCcch
Confidence 999999777899999999999875
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=6.6e-57 Score=440.44 Aligned_cols=422 Identities=27% Similarity=0.417 Sum_probs=370.2
Q ss_pred hhhhheeeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeee
Q 013646 9 FLLYQMVSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 82 (439)
Q Consensus 9 ~~~~~~~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~ 82 (439)
+|.++ ..+|+| .+++..+.+++.+++++|+++|+++..|++|+++||+++||++++..++.+.++.+|+++|+
T Consensus 4 ~~~~~-~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 4 IPGTR-TSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp -CCCE-EEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCce-EEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 34555 688999 44444459999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 013646 83 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 161 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 161 (439)
+|+.++|+|.+++++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+...+| +|||++++.
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTIL 162 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999989
Q ss_pred CChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC------CCcccCCceEeecC
Q 013646 162 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQAD 234 (439)
Q Consensus 162 g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 234 (439)
|+.+.|.+++.++|++||+++|.|+|++++++| ++++++.++++++|+.|+.+..+... .+.+.+....+..+
T Consensus 163 g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T 1hr6_B 163 GPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKEN 242 (443)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECT
T ss_pred CCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccC
Confidence 999999999999999999999999999999999 99999999999999999865433211 11222222222222
Q ss_pred CCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceE
Q 013646 235 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 314 (439)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~ 314 (439)
..+++++.++|++++ .++++.+++.|++.+|+++. ...+.|++++++||+.||++.|++|++++++..+.+.|.|
T Consensus 243 -~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~ 317 (443)
T 1hr6_B 243 -TLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLW 317 (443)
T ss_dssp -TCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEE
T ss_pred -CccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEE
Confidence 347899999999986 58889999999999998632 1223455678999999999999999999988777788999
Q ss_pred EEEEeeC--hhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHH
Q 013646 315 GIQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFL 392 (439)
Q Consensus 315 ~i~~~~~--~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (439)
.+++.++ |++..++++.+.++++++.+.| ++++||+++|..++.++....+++..++..+...++..+.+.+..++.
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 396 (443)
T 1hr6_B 318 GMYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVF 396 (443)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred EEEEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHH
Confidence 9999999 9999999999999999998876 999999999999999999999999999988877654456666688899
Q ss_pred HHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCCCCCCHHHHHhhhh
Q 013646 393 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 437 (439)
Q Consensus 393 ~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~~~~~~~~~~ 437 (439)
+.|.+||++||++++++|+. ++.+++++||...+|+.+++...+.
T Consensus 397 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 397 EQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 99999999999999999998 8899999999999999999887653
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=3.6e-57 Score=442.45 Aligned_cols=419 Identities=27% Similarity=0.458 Sum_probs=369.1
Q ss_pred hhhhheeeecCC-----CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeee
Q 013646 9 FLLYQMVSKLPR-----KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 83 (439)
Q Consensus 9 ~~~~~~~~~l~n-----~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~ 83 (439)
.|.++ ..+|+| ..+.+.+.+++.++|++|+++|++++.|++||++||+++||++++..++.+.++.+|+++|++
T Consensus 11 ~~~~~-~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~ 89 (446)
T 1pp9_A 11 VPETQ-VSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAY 89 (446)
T ss_dssp SCCCE-EEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEE
T ss_pred ccCce-EEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEE
Confidence 34555 689999 444556899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 013646 84 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 162 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g 162 (439)
|+.++|+|.+++++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+...+| +|||+++..|
T Consensus 90 t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 169 (446)
T 1pp9_A 90 STREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEG 169 (446)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred EcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC-C---CCcccCCceEeecCCCC
Q 013646 163 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-P---KSVYTGGDYRCQADSGD 237 (439)
Q Consensus 163 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 237 (439)
+.+.|.+++.++|++||+++|.|+|++++|+| ++++++.++++++|+.|+.++.+.. + .+.+.+....+..+ ..
T Consensus 170 ~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (446)
T 1pp9_A 170 PSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHRED-GL 248 (446)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEET-TS
T ss_pred CHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecC-Cc
Confidence 99999999999999999999999999999999 9999999999999999986543321 1 12222222322222 23
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 317 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~ 317 (439)
+++++.++|++++ ..+++.+++.|++.+||++.. +.| .|++++++||+.||+ .|++|++++++..+.+.|.|.++
T Consensus 249 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~i~ 323 (446)
T 1pp9_A 249 PLAHVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLGAH 323 (446)
T ss_dssp SSEEEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEEEE
T ss_pred cceEEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeEEEEE
Confidence 7899999999987 578899999999999986432 222 345678999999995 57899999887777778999999
Q ss_pred EeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q 013646 318 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG 397 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 397 (439)
+.++|++..++++.+.++++++.+ | ++++||+++|..++.++....+++..++..++..++..|.+.+..++.+.|.+
T Consensus 324 ~~~~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 401 (446)
T 1pp9_A 324 FVCDHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAE 401 (446)
T ss_dssp EEECTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHc
Confidence 999999999999999999999987 7 99999999999999999999999999988887766556766668889999999
Q ss_pred CCHHHHHHHHHHhhC-CCCeEEEecCCCCCCCHHHHHhhh
Q 013646 398 VTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKF 436 (439)
Q Consensus 398 vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~~~~~~~~~ 436 (439)
||++||++++++|+. ++.+++++||...+|.++++...+
T Consensus 402 vt~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 441 (446)
T 1pp9_A 402 VDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGM 441 (446)
T ss_dssp CCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhH
Confidence 999999999999998 789999999999999999987754
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=2.4e-56 Score=436.54 Aligned_cols=408 Identities=21% Similarity=0.299 Sum_probs=354.1
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
..+|+| .++...+.+.+.+++++|+++|++++.|++|+++||+++|+++++..++.+.++.+|+++|++|+.++
T Consensus 9 ~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~ 88 (445)
T 3ami_A 9 ETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDY 88 (445)
T ss_dssp EEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSC
T ss_pred EEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCe
Confidence 578999 56677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 166 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 166 (439)
|+|.+++++++++.+|+++.+++.+|.|++++|+++|+.+++|++ ...++|...+.+.+.+.+| +|||++++.|+.++
T Consensus 89 t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~ 168 (445)
T 3ami_A 89 TAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMND 168 (445)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 6788999999999999999 99999999999999
Q ss_pred hccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--C-CcccCCc-eEeecCCCCCceE
Q 013646 167 INRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--K-SVYTGGD-YRCQADSGDQLTH 241 (439)
Q Consensus 167 l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~~~~~-~~~~~~~~~~~~~ 241 (439)
|.+++.++|++||+++|.|+||+++|+| ++++++.++++++|+.||.++.+... . +...+.. ..+..+. .++.
T Consensus 169 l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 246 (445)
T 3ami_A 169 IQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA--ELPY 246 (445)
T ss_dssp HHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC--SSCE
T ss_pred HhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC--CccE
Confidence 9999999999999999999999999999 99999999999999999865433221 1 1122222 2233333 7888
Q ss_pred EEEEEecCCC--CCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccc-cCC-cceEEEE
Q 013646 242 FVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SGMFGIQ 317 (439)
Q Consensus 242 i~~~~~~~~~--~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~-~~~-~~~~~i~ 317 (439)
+.++|++|.. +..+++..++.+++.+|+++ ++++|++.||++.|++|++++++.. ..+ .|.|.++
T Consensus 247 v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~ 315 (445)
T 3ami_A 247 LALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILE 315 (445)
T ss_dssp EEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEE
T ss_pred EEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEE
Confidence 9999998851 22278899999999999976 4599999999999999999998763 456 7999999
Q ss_pred EeeChhh-HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 013646 318 GTTGSDF-VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE 396 (439)
Q Consensus 318 ~~~~~~~-~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 396 (439)
+.+.|+. .+++++.+.++++++.+.| ++++||+++|+.++.++....+++..++..+....+.++.+....++.+.|+
T Consensus 316 ~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 394 (445)
T 3ami_A 316 GVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLR 394 (445)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9998884 8999999999999998877 9999999999999999999999999999988888775555677889999999
Q ss_pred cCCHHHHHHHHHHhhC-CCCeEEEecCCCCCCCHHHHHhhh
Q 013646 397 GVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKF 436 (439)
Q Consensus 397 ~vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~~~~~~~~~ 436 (439)
+||++||++++++||. ++.+++++||...+|...+=.-+|
T Consensus 395 ~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 435 (445)
T 3ami_A 395 SVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQNEPDF 435 (445)
T ss_dssp TCCHHHHHHHHHTTSCSTTEEEEEEEEECC-----------
T ss_pred cCCHHHHHHHHHHHcCcCCeEEEEEccCccCccccccCCcc
Confidence 9999999999999998 889999999988888766544443
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=2.6e-54 Score=421.62 Aligned_cols=407 Identities=30% Similarity=0.500 Sum_probs=364.7
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
..+|+| .++ ..|.+++.+++++|+..|+++..|++|+++||+++|+++++..++.+.++..|++++++++.++
T Consensus 26 ~~~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~ 104 (439)
T 1pp9_B 26 FTRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTREN 104 (439)
T ss_dssp EEECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSC
T ss_pred EEECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceE
Confidence 678999 455 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhc
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAIN 168 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~ 168 (439)
+.|++++++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+...+|.+||+++..|+.+.|.
T Consensus 105 t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 184 (439)
T 1pp9_B 105 MAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIG 184 (439)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCGGGTT
T ss_pred EEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCCHHHHh
Confidence 99999999999999999999999999999999999999999999998899999999999999887789998899999999
Q ss_pred cCCHHHHHHHHHhhCCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCCCCCCCcccCCceEeecCCCCCceEEEEEEec
Q 013646 169 RLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 248 (439)
Q Consensus 169 ~i~~~~l~~~~~~~~~~~~~~l~ivG~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 248 (439)
+++.++|++||+++|.|+|++++|+|-+++++.++++++|+ |+.+..+....+.+.+....+..+. +++.+.++|++
T Consensus 185 ~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 261 (439)
T 1pp9_B 185 KVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHAALVAES 261 (439)
T ss_dssp TCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEEEEEEEC
T ss_pred hcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEEEEEecC
Confidence 99999999999999999999999999778899999999998 8765433212222333333344443 78999999999
Q ss_pred CCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeChhhHHHH
Q 013646 249 PGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKA 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~ 328 (439)
++ .++++.+++.|++.+|++++.|+.|+ |++++||+.||++.|++|++++++..+.+.|.|.+++.++|+++.++
T Consensus 262 ~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~ 336 (439)
T 1pp9_B 262 AA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDV 336 (439)
T ss_dssp CC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHH
T ss_pred CC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHH
Confidence 86 67899999999999999887666555 67899999999999999999998877777899999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHH
Q 013646 329 IDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ 408 (439)
Q Consensus 329 ~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~ 408 (439)
++.+.+++.++++.| ++++||+++|+.++.++....+++..++..++.....++.+...+++.+.|.+||++||+++++
T Consensus 337 ~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~ 415 (439)
T 1pp9_B 337 IKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAK 415 (439)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999998877 9999999999999999999999999999988887776677777899999999999999999999
Q ss_pred HhhCCCCeEEEecCCCCCCCHHH
Q 013646 409 KLLSSPLTMASYGDVINVPSYDA 431 (439)
Q Consensus 409 ~~l~~~~~~~v~g~~~~~~~~~~ 431 (439)
+++.++..++++||...+|.+++
T Consensus 416 ~~~~~~~~~~v~g~~~~~~~~~~ 438 (439)
T 1pp9_B 416 KFVSGRKSMAASGNLGHTPFIDE 438 (439)
T ss_dssp HHHHSCEEEEEEECGGGCCCGGG
T ss_pred HHhcCCceEEEECCcccCCcccc
Confidence 99987888999999999998775
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.6e-54 Score=422.47 Aligned_cols=398 Identities=17% Similarity=0.189 Sum_probs=355.5
Q ss_pred hhhheeeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeee
Q 013646 10 LLYQMVSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 83 (439)
Q Consensus 10 ~~~~~~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~ 83 (439)
+.++ ..+|+| .+++..|++++.+++++|+.+| ++..|++|+++||+++|+++++..++.+.++..|++++++
T Consensus 12 ~~~~-~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 12 LNVQ-TWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp CCCE-EEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCE-EEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 4455 689999 5666679999999999999999 7899999999999999999999999999999999999999
Q ss_pred ecCceEEEEEEecCCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 013646 84 ASREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 160 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 160 (439)
++.++++|.+++++++ ++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+...+| ++||+++.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 99999999999999999999999999999999999899999999999999999 99999999
Q ss_pred CCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC-Cc-ccCCceEeecCCCC
Q 013646 161 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SV-YTGGDYRCQADSGD 237 (439)
Q Consensus 161 ~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 237 (439)
.|+.+.|.+++.++|++||+++|.|+|++++|+| ++++++.++++++|+.||.++.+..+. +. ..+....+..+.
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS-- 247 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--
Confidence 9999999999999999999999999999999999 999999999999999998764432221 11 122233444554
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 317 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~ 317 (439)
.++.+.++|+++. .++++.+++.|++.+||++ |++++||+.||++.|++|++++++..+.+.|.|.++
T Consensus 248 ~~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~ 315 (434)
T 3gwb_A 248 SQTSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMIN 315 (434)
T ss_dssp SEEEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEE
T ss_pred CceeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEE
Confidence 8899999999886 6889999999999999975 145999999999999999999998888888999999
Q ss_pred EeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q 013646 318 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG 397 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 397 (439)
+.++|++..++++.+.++++++.+.| ++++||+++|..++.++....+++..++..++.....+...+..+++.+.|++
T Consensus 316 ~~~~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 394 (434)
T 3gwb_A 316 LQTRAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQE 394 (434)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred EecchhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Confidence 99999999999999999999998776 99999999999999999999999999999988876644444567899999999
Q ss_pred CCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 398 VTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 398 vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
||++||++++++||. ++.+++++||..
T Consensus 395 vt~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 395 LTVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp CCHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred CCHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 999999999999999 889999999964
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.8e-53 Score=413.75 Aligned_cols=396 Identities=17% Similarity=0.238 Sum_probs=350.4
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCC----CCCHHHHHHHHHHcCCeeeeee
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNVQASA 84 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~----~~~~~~l~~~l~~~g~~~~~~~ 84 (439)
..+|+| .+++..|.+++.+++++|+.+|++++.|++|+++||+++|++ +++..++.+.++.+|++++++|
T Consensus 6 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t 85 (424)
T 3amj_B 6 HWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGA 85 (424)
T ss_dssp EEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEE
T ss_pred EEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeec
Confidence 578999 566667899999999999999999999999999999999999 9999999999999999999999
Q ss_pred cCceEEEEEEecCCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 013646 85 SREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 161 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~--~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 161 (439)
+.++|+|+++++++++ +.+|+++.+++.+|.|++++|+++|+.++++++...++|...+.+.+...+| ++||+.+.
T Consensus 86 ~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~- 164 (424)
T 3amj_B 86 EADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS- 164 (424)
T ss_dssp CSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-
T ss_pred CCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-
Confidence 9999999999999998 9999999999999999999999999999999998889999999999999999 99999886
Q ss_pred CChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC-CCCcccCC-ceEeecCCCCC
Q 013646 162 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVYTGG-DYRCQADSGDQ 238 (439)
Q Consensus 162 g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 238 (439)
+.+.|.+++.++|++||+++|.|+|++++|+| ++++++.++++++|+.||.+..+.. +.+..+.+ ...+..+. .
T Consensus 165 -~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 241 (424)
T 3amj_B 165 -SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANPA--T 241 (424)
T ss_dssp -CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECSS--S
T ss_pred -CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCCC--C
Confidence 88999999999999999999999999999999 9999999999999999986543322 11122222 22333444 8
Q ss_pred ceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEE
Q 013646 239 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 318 (439)
Q Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~ 318 (439)
++.+.++|+++. .++++.+++.+++.+|+++ +++++||+.||++.|++|++++++..+.+.|.|.+++
T Consensus 242 ~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~ 309 (424)
T 3amj_B 242 QAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGF 309 (424)
T ss_dssp EEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEE
T ss_pred ccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEE
Confidence 999999999876 5788999999999999974 2569999999999999999999888777889999999
Q ss_pred eeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcC
Q 013646 319 TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGV 398 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 398 (439)
.++|++..++++.+.+++.++.+.| ++++||+++|+.++.++....+++..++..++.....+...+...++.+.|.+|
T Consensus 310 ~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 388 (424)
T 3amj_B 310 ETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAV 388 (424)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTTTTSHHHHHHTC
T ss_pred EeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHcC
Confidence 9999999999999999999998877 999999999999999999889999999998887665333335577889999999
Q ss_pred CHHHHHHHHHHhhC-CCCeEEEecCCCCCC
Q 013646 399 TAKDIASVAQKLLS-SPLTMASYGDVINVP 427 (439)
Q Consensus 399 t~~dv~~~a~~~l~-~~~~~~v~g~~~~~~ 427 (439)
|++||++++++|+. ++.+++++||...++
T Consensus 389 t~~dv~~~a~~~l~~~~~~~~~~~~~~~~~ 418 (424)
T 3amj_B 389 TVEQVREAFARHVKRENLITVVVGGKASLE 418 (424)
T ss_dssp CHHHHHHHHHHHCCGGGCEEEEEECC----
T ss_pred CHHHHHHHHHHhcCccceEEEEECChhhhh
Confidence 99999999999998 899999999987664
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.9e-52 Score=407.48 Aligned_cols=406 Identities=19% Similarity=0.289 Sum_probs=354.4
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCce
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQ 88 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 88 (439)
..+|+| .+++..|.+.+.+++++|+++|++++.|++|+++||+++|+.+ ..++..|+++|++++.++
T Consensus 3 ~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~~ 75 (431)
T 3cx5_A 3 VTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRDF 75 (431)
T ss_dssp CEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSSC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCCe
Confidence 467888 5555668999999999999999999999999999999998753 246889999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc-CCCCCCCCCCC
Q 013646 89 MGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGY-SGALANPLLAP 163 (439)
Q Consensus 89 ~~~~~~~~~~~~~~~l~ll~~~l~~~~---~~~~~~~~~k~~~~~e~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~~~g~ 163 (439)
++|++++++++++.+|+++.+++.+|. |++++|+++|+.++++++...++| ...+.+.+...+| ++||+++..|+
T Consensus 76 t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~ 155 (431)
T 3cx5_A 76 QSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGT 155 (431)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCC
T ss_pred EEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 999999999999999999999999999 999999999999999999888899 9999999999999 99999998999
Q ss_pred hhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCCC-cccCCceEeecCCCCCceE
Q 013646 164 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS-VYTGGDYRCQADSGDQLTH 241 (439)
Q Consensus 164 ~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (439)
.+.|.+++.++|++||+++|.|+|++++|+| ++++++.++++++|+.||.++.+....+ .+.+....+..+ ..+++.
T Consensus 156 ~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 234 (431)
T 3cx5_A 156 LESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD-TLPKAW 234 (431)
T ss_dssp HHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT-TSSSEE
T ss_pred HHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC-CCCceE
Confidence 9999999999999999999999999999999 9999999999998888876543321111 122222223222 337899
Q ss_pred EEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCC-cchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEee
Q 013646 242 FVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 320 (439)
Q Consensus 242 i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~-~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~ 320 (439)
+.++|++++ .++++.+++.+++.+|++++ .+++|++ ++++||+.||+ .|++|++++++..+.+.|.|.+++.+
T Consensus 235 v~~~~~~~~--~~~~~~~~~~vl~~iL~~~~---~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~~ 308 (431)
T 3cx5_A 235 ISLAVEGEP--VNSPNYFVAKLAAQIFGSYN---AFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTAT 308 (431)
T ss_dssp EEEEEECCC--TTCTTHHHHHHHHHHHCEEE---TTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeecCC--CCCccHHHHHHHHHHcCCCc---cCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEee
Confidence 999999986 67889999999999999643 3455553 67999999996 58999999987777778999999999
Q ss_pred Ch-hhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHH--cccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q 013646 321 GS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM--NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG 397 (439)
Q Consensus 321 ~~-~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 397 (439)
+| ++..++++.+.+++.++.+ | ++++||+++|+.++.++.. ..+++..++..++..++..+.+....++.+.|.+
T Consensus 309 ~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 386 (431)
T 3cx5_A 309 RNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDA 386 (431)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 98 9999999999999999988 7 9999999999999999999 8999999999888765545666668899999999
Q ss_pred CCHHHHHHHHHHhhC-CCCeEEEecCCCCCCCHHHHHhhh
Q 013646 398 VTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKF 436 (439)
Q Consensus 398 vt~~dv~~~a~~~l~-~~~~~~v~g~~~~~~~~~~~~~~~ 436 (439)
||++||++++++++. ++.+++++||...+|+++++.+.+
T Consensus 387 vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~ 426 (431)
T 3cx5_A 387 ITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDM 426 (431)
T ss_dssp CCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTT
T ss_pred CCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHH
Confidence 999999999999998 889999999999999999987754
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=4.5e-48 Score=375.87 Aligned_cols=388 Identities=14% Similarity=0.153 Sum_probs=333.4
Q ss_pred eecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCC-CHHHHHHHHHHc-CCeeeeeecCc
Q 013646 16 SKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 87 (439)
Q Consensus 16 ~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~-~~~~l~~~l~~~-g~~~~~~~~~~ 87 (439)
.+|+| .+++..|.+.+.+++++|+.+|+ .|++|+++||+++|++++ +..++.+.++.. |++++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 45677 55556799999999999998764 699999999999999998 888999999997 99999999988
Q ss_pred e----EEEEEEecCC-------CHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 013646 88 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 151 (439)
Q Consensus 88 ~----~~~~~~~~~~-------~~~~~l~ll~~~l~~~~-----~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~ 151 (439)
+ +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.++++...++|...+.+.+...+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 5899999987 69999999999999999 999999999999999999888999999999999999
Q ss_pred c--CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC-C--Cccc
Q 013646 152 Y--SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-K--SVYT 225 (439)
Q Consensus 152 ~--~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~-~--~~~~ 225 (439)
| +|||+++..|+.+.|.+++.++|++||+++|.|+|++++|+| ++++++.+++ ++|+ ||..+....+ . .+..
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999889999999999999999999999999999999999 9999999999 9999 9865432211 1 1111
Q ss_pred CCceEeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeec
Q 013646 226 GGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS 305 (439)
Q Consensus 226 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~ 305 (439)
.....+....+.+++.+.++|++|.. .++++.+++.|++.+||++ ++++||+.||++.|++|++++++
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 11222212212389999999998622 4788999999999999976 34999999999999999999876
Q ss_pred cccCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC
Q 013646 306 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 385 (439)
Q Consensus 306 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (439)
... .|.|.+++.++|+++.++++.+.++++++++.| ++++||+++|..++.++....+++..++..++..+..++.+
T Consensus 309 ~~~--~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (425)
T 3d3y_A 309 DTF--RGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTM 385 (425)
T ss_dssp ETT--TTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSC
T ss_pred ccc--CceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCC
Confidence 543 688999999999999999999999999999876 99999999999999999999999999999888877743666
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHhhCCCCeEEEecCCC
Q 013646 386 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 424 (439)
Q Consensus 386 ~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~v~g~~~ 424 (439)
.+..++.+.|++||++||++++++++.+ ..++++|+..
T Consensus 386 ~~~~~~~~~i~~vt~edv~~~a~~~~~~-~~~~v~g~~~ 423 (425)
T 3d3y_A 386 LTAEEWIARINAVTIPEIQEVAKRLELQ-AIFFLEGETE 423 (425)
T ss_dssp CCHHHHHHHHHHCCHHHHHHHHHHCEEE-EEEEEEEECC
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHhccCc-eEEEEeCCCC
Confidence 6688999999999999999999998754 5667777654
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1e-48 Score=385.54 Aligned_cols=398 Identities=16% Similarity=0.133 Sum_probs=320.0
Q ss_pred hhhheeeecCC--------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHH----HcC
Q 013646 10 LLYQMVSKLPR--------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIG 77 (439)
Q Consensus 10 ~~~~~~~~l~n--------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~----~~g 77 (439)
|.++ ..+|+| .++.+.|++++.++|++|+++|++++.|++||++||+|+||++++..++.+.++ ..|
T Consensus 24 p~~~-~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G 102 (492)
T 3go9_A 24 PAWQ-QGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNER 102 (492)
T ss_dssp TTEE-EEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSS
T ss_pred CCeE-EEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcC
Confidence 3444 689999 233456899999999999999999999999999999999999999999987665 478
Q ss_pred CeeeeeecCceEEEEEEecC---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-C
Q 013646 78 GNVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-S 153 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~ 153 (439)
+.+|++|+.++|+|.+++++ ++++.+|+++.+++.+|.|++++|+++|..+.++++...++|....+. ..++ .
T Consensus 103 ~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~---~~~~~~ 179 (492)
T 3go9_A 103 PLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGS 179 (492)
T ss_dssp CCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH---HHTTTS
T ss_pred CCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHH---HHhccC
Confidence 99999999999999999999 679999999999999999999999999998777777666677654432 3455 5
Q ss_pred CCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCC--C-CCcccCCce
Q 013646 154 GALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGDY 229 (439)
Q Consensus 154 ~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~~ 229 (439)
++++++..+ +.|.+++.++|++||++||+|+|++++|+| ++++++.++++++|+.|+.+..... + .++..+...
T Consensus 180 ~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 257 (492)
T 3go9_A 180 SLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPV 257 (492)
T ss_dssp TTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCE
T ss_pred CcccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCce
Confidence 566665533 578999999999999999999999999999 9999999999999999987543211 1 111222222
Q ss_pred -EeecCCCCCceEEEEEEecCCCCCCCcchHHH------HHHHHhhcCCCCCCCCCCCCCcchHHHHHHHh--hCCCeeE
Q 013646 230 -RCQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQS 300 (439)
Q Consensus 230 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~--~~g~~y~ 300 (439)
.+..+. .++.+.++|++|. ..++|..++ .+++.+|+ ++|+..||+ +.|++|+
T Consensus 258 ~~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~ 318 (492)
T 3go9_A 258 SLMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLG 318 (492)
T ss_dssp EEEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEE
T ss_pred EEEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccccccc
Confidence 333444 8999999999986 566666554 79999998 799999999 8999999
Q ss_pred EEeeccccCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHccc-----ChHHHHHHH
Q 013646 301 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE-----SRMVVSEDI 375 (439)
Q Consensus 301 v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~-----~~~~~~~~~ 375 (439)
+++++....+.+.|.+ .+.+++..++++.+.++++++.+.| +|++||+++|+.+++++....+ ++...+..+
T Consensus 319 ~~s~~~~~~~~~~~~i--~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~ 395 (492)
T 3go9_A 319 FDCRVQYQRAQCAIHL--NTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQR 395 (492)
T ss_dssp EEEEEETTEEEEEEEE--EECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHH
T ss_pred cCchhhhhhcceEEEE--EcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 9998776665555544 5589999999999999999998887 9999999999999999877644 466677777
Q ss_pred HHHHHhcCCCCCHH----HHHHHHhcCCHHHHHHHHHHhhCCCCeEEEecCCCCCCC-HHHHHhh
Q 013646 376 GRQVLTYGERKPVE----HFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPS-YDAVSSK 435 (439)
Q Consensus 376 ~~~~~~~~~~~~~~----~~~~~i~~vt~~dv~~~a~~~l~~~~~~~v~g~~~~~~~-~~~~~~~ 435 (439)
.+.+.........+ .+.+.|.+||++||++++++++..+..++++|+...++. .+++...
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~ 460 (492)
T 3go9_A 396 LRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEI 460 (492)
T ss_dssp HHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHH
T ss_pred HHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHH
Confidence 76665443322232 234669999999999999999996678889998877764 5555544
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.6e-47 Score=405.56 Aligned_cols=394 Identities=13% Similarity=0.109 Sum_probs=336.4
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCC-HHHHHHHHHHcCCeeeeeecCc
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQASASRE 87 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~-~~~l~~~l~~~g~~~~~~~~~~ 87 (439)
..+|+| .+++..+.+.+.+++++|+++|+++..|+|||+|||+|+||++++ ..++.+.++.+|+++|++|+.+
T Consensus 23 ~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d 102 (939)
T 1q2l_A 23 AIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPY 102 (939)
T ss_dssp EEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSS
T ss_pred EEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCC
Confidence 679999 667777899999999999999999999999999999999999998 4699999999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013646 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 166 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 166 (439)
+|+|.+++++++++.+|+++.+++.+|.|++++++++|..|.+|++...++|...+.+.+...+| +|||+++..|+.+.
T Consensus 103 ~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~ 182 (939)
T 1q2l_A 103 RTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLET 182 (939)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcc----CCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCcccC--CceEeecCCCC
Q 013646 167 INR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG--GDYRCQADSGD 237 (439)
Q Consensus 167 l~~----i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~ 237 (439)
|.+ ++.++|++||++||.|+||+++|+| ++++++.++++++|+.|+.+..+... .+.+.+ ....+......
T Consensus 183 l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (939)
T 1q2l_A 183 LSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPAL 262 (939)
T ss_dssp HSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCSS
T ss_pred HhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEEEEEeCC
Confidence 999 9999999999999999999999999 99999999999999999875433211 122221 11223222223
Q ss_pred CceEEEEEEecCCCCCCC-cchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeec--cccCCcceE
Q 013646 238 QLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS--NIYNHSGMF 314 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~-~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~--~~~~~~~~~ 314 (439)
+++.+.++|++|. ..+ .+..++.+++.+||++.+ ++|++.||+ .|++|+++++. ....+.|.|
T Consensus 263 ~~~~l~i~~~~~~--~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~~~g~f 328 (939)
T 1q2l_A 263 PRKVLRVEFRIDN--NSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNGNSGVL 328 (939)
T ss_dssp CCCEEEEEEEEEC--CGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTSSEEEE
T ss_pred CCcEEEEEEEcCC--hHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCCCceEE
Confidence 7889999999986 333 366788999999998644 899999995 79999998874 344567899
Q ss_pred EEEEeeCh---hhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcc-cChHHHHHHHHHHHHhcCCCCCHHH
Q 013646 315 GIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVLTYGERKPVEH 390 (439)
Q Consensus 315 ~i~~~~~~---~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (439)
.+++.+.+ ++..++++.+.++++++++.| +++++|+++|..+..++.... +++...+..++..+. .........
T Consensus 329 ~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 406 (939)
T 1q2l_A 329 AISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPVEHTLD 406 (939)
T ss_dssp EEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCGGGTTT
T ss_pred EEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCHHHHhc
Confidence 99999877 488999999999999998887 999999999999999987765 677777777777654 332333334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCCC
Q 013646 391 FLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVIN 425 (439)
Q Consensus 391 ~~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~~ 425 (439)
....+.++|+++|++++++ +. ++.+++++||...
T Consensus 407 ~~~~i~~vt~~~i~~~~~~-l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 407 AVNIADRYDAKAVKERLAM-MTPQNARIWYISPKEP 441 (939)
T ss_dssp TTTCCCCCCHHHHHHHHHH-CSGGGCEEEEECTTCC
T ss_pred CchhhhccCHHHHHHHHHh-cCHHHcEEEEEcCCCC
Confidence 4567899999999999987 55 8889999998654
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.9e-44 Score=385.29 Aligned_cols=392 Identities=16% Similarity=0.124 Sum_probs=328.7
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCH-HHHHHHHHHcCCeeeeeecCc
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQASASRE 87 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~-~~l~~~l~~~g~~~~~~~~~~ 87 (439)
..+|+| .++...+++++.++|++|+++||++..|+||++|||+|+||++++. .++.+.++.+|+.+|++|+.+
T Consensus 37 ~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d 116 (990)
T 3cww_A 37 GLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116 (990)
T ss_dssp EEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSS
T ss_pred EEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCC
Confidence 678999 6777788999999999999999999999999999999999999987 799999999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 013646 88 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 166 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 166 (439)
+|+|.+++++++++.+|+++.+++.+|.|++++|++++..|.+|++...++|...+.+.+...+| +|||++...|+.+.
T Consensus 117 ~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~ 196 (990)
T 3cww_A 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT 196 (990)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHH
T ss_pred ceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999889999999898888899 99999999999999
Q ss_pred hccC-------CHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CcccC---CceEeec
Q 013646 167 INRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTG---GDYRCQA 233 (439)
Q Consensus 167 l~~i-------~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~ 233 (439)
|.++ +.++|++||++||.|+||+++|+| ++++++.++++++|+.|+.++.+.... +++.. .......
T Consensus 197 l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (990)
T 3cww_A 197 LETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIV 276 (990)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSSEEEEEC
T ss_pred HhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcCeEEEEE
Confidence 9999 999999999999999999999999 999999999999999998764332111 12211 1112222
Q ss_pred CCCCCceEEEEEEecCCCCCC-CcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccc-cCCc
Q 013646 234 DSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNHS 311 (439)
Q Consensus 234 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~-~~~~ 311 (439)
+ ...++.+.++|+.|. .. ..+..++.+++.+|++++ .++ |+..||+ .|++|+++++... ..+.
T Consensus 277 ~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~lLg~~~----------~~s-l~~~Lr~-~g~~~~~~a~~~~~~~~~ 341 (990)
T 3cww_A 277 P-IKDIRNLYVTFPIPD--LQKYYKSNPGHYLGHLIGHEG----------PGS-LLSELKS-KGWVNTLVGGQKAGARGF 341 (990)
T ss_dssp C-SSSCCEEEEEEEECC--CGGGTTTCHHHHHHHHHTCCS----------TTC-HHHHHHH-TTSCSCEEEEEEEEETTE
T ss_pred E-CCCCcEEEEEEEcCC--hhhhhhhCHHHHHHHHhcCCC----------CCc-HHHHHHH-CCCcceeeeccccCCCCc
Confidence 2 236889999999986 33 456788999999998632 124 6679996 6999999987654 4556
Q ss_pred ceEEEEEeeCh---hhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHc-ccChHHHHHHHHHHHHhcCCCCC
Q 013646 312 GMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVLTYGERKP 387 (439)
Q Consensus 312 ~~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 387 (439)
+.|.+++.+.+ ++..++++.+.++++.+++.| ++++++++++......+... .+++..++..+..++. ...+..
T Consensus 342 ~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 419 (990)
T 3cww_A 342 MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH-YYPLEE 419 (990)
T ss_dssp EEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT-TSCGGG
T ss_pred cEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh-hCCHHH
Confidence 88999998765 488999999999999998888 99999999998887777654 4567777777765543 333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhCCCCeEEEecCC
Q 013646 388 VEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 423 (439)
Q Consensus 388 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~v~g~~ 423 (439)
.....+.+.++|+++|+++++.+..++.+++++||.
T Consensus 420 ~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~ 455 (990)
T 3cww_A 420 VLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKS 455 (990)
T ss_dssp TTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGG
T ss_pred HhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCC
Confidence 344557799999999999998644477788899984
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=5.3e-44 Score=381.75 Aligned_cols=392 Identities=12% Similarity=0.071 Sum_probs=318.5
Q ss_pred eeecCC------CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHH-HHHH-HcCCeeeeeecC
Q 013646 15 VSKLPR------KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIV-REVE-AIGGNVQASASR 86 (439)
Q Consensus 15 ~~~l~n------~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~-~~l~-~~g~~~~~~~~~ 86 (439)
..+|+| .+++..+. +|.+|++.++++..|+||++|||+|+||++++..++. +.+. ..|+.+|++|+.
T Consensus 40 ~~~l~nGl~v~~~~~~~~~~-----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~ 114 (995)
T 2fge_A 40 FKHKKTGCEVMSVSNEDENK-----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYP 114 (995)
T ss_dssp EEETTTCCEEEEEECSCSSE-----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECS
T ss_pred EEECCCCCEEEEEEcCCCcc-----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECC
Confidence 467888 44444343 4678999999999999999999999999999987754 4444 468899999999
Q ss_pred ceEEEEEEecC-CCHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHHhcCChHHHHHHHHH
Q 013646 87 EQMGYSFDALK-TYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLEAIH 148 (439)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~l~ll~~~l~~~~~--~~~~~~~~---------------k~~~~~e~~~~~~~~~~~~~~~l~ 148 (439)
++|+|.+.+.. ++++.+|+++.+++.+|.| ++++|+++ |.+|++|++...++|...+.+.+.
T Consensus 115 d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~ 194 (995)
T 2fge_A 115 DRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQ 194 (995)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHH
T ss_pred CceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHH
Confidence 99999998764 6899999999999999999 99999999 899999999999999999999999
Q ss_pred HHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCC--CCCC--CCCCCC
Q 013646 149 SAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIHP--REEPKS 222 (439)
Q Consensus 149 ~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~--~~~~--~~~~~~ 222 (439)
..+| +|||+++..|++++|.+++.++|++||++||+|+||+++|+| ++++++.++++++|+.|+ ..+. ...+.+
T Consensus 195 ~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~ 274 (995)
T 2fge_A 195 QALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQK 274 (995)
T ss_dssp HHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCCCC
T ss_pred HHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCC
Confidence 9999 999999999999999999999999999999999999999999 999999999999999998 4221 111122
Q ss_pred cccCCc-e--Eeec---CCCCCceEEEEEEecCCCCCC--CcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhh
Q 013646 223 VYTGGD-Y--RCQA---DSGDQLTHFVLAFELPGGWHK--DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE 294 (439)
Q Consensus 223 ~~~~~~-~--~~~~---~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~ 294 (439)
.+.... . .+.. .....++.+.++|++|. .. .++..++.+++.+|+++. +|+|++.||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l~e~ 341 (995)
T 2fge_A 275 LFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE--KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKILLES 341 (995)
T ss_dssp CCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS--SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHHHHT
T ss_pred CCCCCceEEEecccCCCCCccCccEEEEEEEcCC--CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHHHhc
Confidence 232221 1 1211 22237899999999986 44 588999999999999764 49999999985
Q ss_pred CCCeeEEEee-ccccCCcceEEEE-EeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcc--cChH-
Q 013646 295 FPQVQSFSAF-SNIYNHSGMFGIQ-GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL--ESRM- 369 (439)
Q Consensus 295 ~g~~y~v~~~-~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~--~~~~- 369 (439)
|++|+++++ +......+.|.+. ..+++++..++++.+.++++++.++| +++++|+++|+.+..++.... +++.
T Consensus 342 -gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~~~~~~~~ 419 (995)
T 2fge_A 342 -GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENNTGSFPRG 419 (995)
T ss_dssp -TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCTTSCHH
T ss_pred -CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhccCCCCccH
Confidence 899999876 5555557888886 46889999999999999999998888 999999999999998887543 2344
Q ss_pred -HHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH----H----HHHHHHHHhhC-C-CCeEEEecCCCCC
Q 013646 370 -VVSEDIGRQVLTYGERKPVEHFLKTVEGVTA----K----DIASVAQKLLS-S-PLTMASYGDVINV 426 (439)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~----~----dv~~~a~~~l~-~-~~~~~v~g~~~~~ 426 (439)
..+..+...+++++++....++.+.+++++. + +|++++++||. + +.++++++|....
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~ 487 (995)
T 2fge_A 420 LSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEK 487 (995)
T ss_dssp HHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTH
T ss_pred HHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccH
Confidence 3456666666655666555555566666666 7 89999999996 3 5577788886543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=2.6e-43 Score=372.20 Aligned_cols=381 Identities=14% Similarity=0.111 Sum_probs=308.6
Q ss_pred EEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHH--cCCeeeeeecCceEEEEEEecC-CCHHHHHHHHHH
Q 013646 33 LYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNVQASASREQMGYSFDALK-TYVPEMVELLID 109 (439)
Q Consensus 33 l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~--~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ll~~ 109 (439)
.+|.+|++.+|++..|++|++|||+|+||++++..++...+.. +|+.+|++|+.|+|+|.+.+++ ++++.+|+++.+
T Consensus 111 ~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D 190 (1193)
T 3s5m_A 111 QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMD 190 (1193)
T ss_dssp EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999999999988888 8899999999999999999888 899999999999
Q ss_pred hhhCCCCCHHH--HHHH-----------------------------HHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC
Q 013646 110 CVRNPVFLDWE--VNEQ-----------------------------LTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 157 (439)
Q Consensus 110 ~l~~~~~~~~~--~~~~-----------------------------k~~~~~e~~~~~~~~~~~~~~~l~~~~~-~~~~~ 157 (439)
++.+|.|++++ |.++ |.++++|++...++|...+.+.+.+.+| +|||+
T Consensus 191 ~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~ 270 (1193)
T 3s5m_A 191 SVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHS 270 (1193)
T ss_dssp HHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGG
T ss_pred HHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCCCC
Confidence 99999999887 8777 5789999999999999999999999999 99999
Q ss_pred CCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCC-----CC-CCcccCCc-e
Q 013646 158 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE-----EP-KSVYTGGD-Y 229 (439)
Q Consensus 158 ~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~-----~~-~~~~~~~~-~ 229 (439)
++..|++++|.+++.++|++||++||+|+|++++++| ++++++.++++++|+.|+.++.+. .+ .+...+.. .
T Consensus 271 ~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v 350 (1193)
T 3s5m_A 271 NNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYKKGPFYI 350 (1193)
T ss_dssp SCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCCCCCCBCCCCCEEE
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCcccccccCCCCCCCCCeEE
Confidence 9999999999999999999999999999999999999 999999999999999998654311 11 11222221 2
Q ss_pred EeecC--CCCCceEEEEEEecCCC---CCC-----------------------------CcchHHHHHHHHhhcCCCCCC
Q 013646 230 RCQAD--SGDQLTHFVLAFELPGG---WHK-----------------------------DKDAMTLTVLQMLLGGGGSFS 275 (439)
Q Consensus 230 ~~~~~--~~~~~~~i~~~~~~~~~---~~~-----------------------------~~~~~~~~ll~~il~~~~~~~ 275 (439)
....+ ....++.+.++|++|+. ..+ +++.+++.+++.+|+++.+
T Consensus 351 ~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~s-- 428 (1193)
T 3s5m_A 351 KKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPE-- 428 (1193)
T ss_dssp EEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTT--
T ss_pred EEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHCCCCC--
Confidence 22111 23478999999999741 012 4789999999999998754
Q ss_pred CCCCCCCcchHHHHHHHhhCCCeeEEE-eeccccCCcceEEEEEe-eChh--------hH-HHHHHHHHHHHHhhhCCCC
Q 013646 276 AGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQGT-TGSD--------FV-SKAIDLAARELISVATPGE 344 (439)
Q Consensus 276 ~~~~~~~~~s~L~~~lR~~~g~~y~v~-~~~~~~~~~~~~~i~~~-~~~~--------~~-~~~~~~~~~~~~~l~~~g~ 344 (439)
|+||+.||+ .|++|+++ +++......+.|.+.+. ++++ ++ +++.+.+.++++++.++|
T Consensus 429 ---------SrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~g- 497 (1193)
T 3s5m_A 429 ---------SVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEG- 497 (1193)
T ss_dssp ---------SHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------CHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcC-
Confidence 999999997 69999998 66776666778888874 5554 36 689999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHc-ccChHHH--HHHHHHHHHhcCCCCC---HHHHHHHHhcCC---HHHHHHHHHHhhC-CC
Q 013646 345 VDQVQLDRAKQSTKSAILMN-LESRMVV--SEDIGRQVLTYGERKP---VEHFLKTVEGVT---AKDIASVAQKLLS-SP 414 (439)
Q Consensus 345 i~~~el~~ak~~l~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~i~~vt---~~dv~~~a~~~l~-~~ 414 (439)
|++++++++|.++..++... ..++... +..+...+++.+++.. +.+.++.++..+ +.++++++++||. ++
T Consensus 498 i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~n~ 577 (1193)
T 3s5m_A 498 FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNA 577 (1193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhccCC
Confidence 99999999999999887663 3344433 3455566777787754 556666666553 4599999999986 44
Q ss_pred C-eEEEecCCCCC
Q 013646 415 L-TMASYGDVINV 426 (439)
Q Consensus 415 ~-~~~v~g~~~~~ 426 (439)
. +++++-|...+
T Consensus 578 ~~~~~~~~P~~~~ 590 (1193)
T 3s5m_A 578 HRSVILLEGDENY 590 (1193)
T ss_dssp CEEEEEEEEESSH
T ss_pred ceEEEEEEcCCCH
Confidence 4 55555565444
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=5.1e-42 Score=324.78 Aligned_cols=341 Identities=23% Similarity=0.298 Sum_probs=281.2
Q ss_pred ccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHH
Q 013646 22 HQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVP 101 (439)
Q Consensus 22 ~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
++...|.+++.+++++|+++| ++.|++|+++||+++||++++..++.+.++..|+++|++|+.++++|++++++++++
T Consensus 6 ~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~ 83 (352)
T 3cx5_B 6 RDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLP 83 (352)
T ss_dssp ECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHH
T ss_pred eeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHH
Confidence 456678999999999999997 478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHH
Q 013646 102 EMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVA 180 (439)
Q Consensus 102 ~~l~ll~~~l~~~~~~~~~~~-~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~ 180 (439)
.+|+++.+++.+|.|++++|+ ++|+.++++++...++|...+.+.+.+.+|++||+++.. .+.|.+++.++|++||+
T Consensus 84 ~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l~~f~~ 161 (352)
T 3cx5_B 84 YYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDIKDFAD 161 (352)
T ss_dssp HHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHHHHHHH
Confidence 999999999999999999998 999999999999899999999999999999889988864 68999999999999999
Q ss_pred hhCCCCCeEEEEcCCCHHHHHHHH-HhhcCCCCCCCCCCC--CCCcccCCceEeecCCCCCceEEEEEEecCCCCCCCcc
Q 013646 181 ENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKD 257 (439)
Q Consensus 181 ~~~~~~~~~l~ivG~~~~~~~~~i-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 257 (439)
++|.|+|++++++|++++++.+++ +++|+.||.+..+.. +.+.+.+....+.. . .++.+.++++ .++++
T Consensus 162 ~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-----~~~~~ 233 (352)
T 3cx5_B 162 KVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-I--GDSVAAIGIP-----VNKAS 233 (352)
T ss_dssp HHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-S--SSEEEEEEEE-----ECTTT
T ss_pred HhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-C--CCceEEEecC-----CCChh
Confidence 999999999999999999999999 899999986543221 11222233333322 2 5666666543 35578
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeC-hhhHHHHHHHHHHHH
Q 013646 258 AMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDLAAREL 336 (439)
Q Consensus 258 ~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~ 336 (439)
.+++.|++.+|| + .||++.|++ ++++...+.+.|.|.+++.++ ++++.+++. +++
T Consensus 234 ~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~~i~---~~l 289 (352)
T 3cx5_B 234 LAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSSNIK---KIV 289 (352)
T ss_dssp HHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHHHHH---HHH
Confidence 999999999998 3 568888876 555555566778999999987 555544444 444
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHhhCCCCe
Q 013646 337 ISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLT 416 (439)
Q Consensus 337 ~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~ 416 (439)
.+ | ++++||+++|+.++.++....+++ +.+.++ .|++||.+ + | ++++
T Consensus 290 ~~----~-~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~~-------~-~-~~~~ 336 (352)
T 3cx5_B 290 AD----L-KKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----NFDAVKDF-------K-L-GKFN 336 (352)
T ss_dssp HH----H-HSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCEE-------C-C-CSCE
T ss_pred Hh----c-CCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----eeeeeeHh-------h-c-CCce
Confidence 32 4 899999999999999998887763 333222 58999932 2 5 8999
Q ss_pred EEEecCCCCCCCHHH
Q 013646 417 MASYGDVINVPSYDA 431 (439)
Q Consensus 417 ~~v~g~~~~~~~~~~ 431 (439)
++++||...+|+.++
T Consensus 337 ~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 337 YVAVGDVSNLPYLDE 351 (352)
T ss_dssp EEEEESGGGSCCGGG
T ss_pred EEEEccccccCcccc
Confidence 999999988998765
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=6.2e-34 Score=304.07 Aligned_cols=380 Identities=9% Similarity=-0.011 Sum_probs=298.1
Q ss_pred CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccC-CCCCCCHHHHHHHHHHcCCeeee-----eecC-----ceE
Q 013646 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA-----SASR-----EQM 89 (439)
Q Consensus 21 ~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~-g~~~~~~~~l~~~l~~~g~~~~~-----~~~~-----~~~ 89 (439)
.+....+.+++.+++++|.. +++..|+++++.+++.. |+++++..++.+.++...+.+++ .++. +++
T Consensus 567 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~ 644 (995)
T 2fge_A 567 HDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKI 644 (995)
T ss_dssp EECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEE
T ss_pred EecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceE
Confidence 55566789999999999886 45678999999988885 99999999999999966555555 5554 889
Q ss_pred EEEEEecCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc-CCCCCCCCCC----
Q 013646 90 GYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAGY-SGALANPLLA---- 162 (439)
Q Consensus 90 ~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~-~~~~~k~~~~~e~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~~~g---- 162 (439)
.+++++.+++++.+|+++.+++.+|.|+++ .|+++++.++.++.... +++...+...+...+. .++|.....|
T Consensus 645 ~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~ 724 (995)
T 2fge_A 645 IVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYL 724 (995)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHH
Confidence 999999999999999999999999999999 99999999999999765 5677777877776654 4544322111
Q ss_pred -Ch--------hhhccCCHHHHHHHHHhhCCCCCeEEEEcC-CCH-HHHHHHHHhhcCCC-CCCCCCCCCCCcccCCce-
Q 013646 163 -PE--------SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSIHPREEPKSVYTGGDY- 229 (439)
Q Consensus 163 -~~--------~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~~~-~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~- 229 (439)
.. +.+..+ .++|++|++++|.+++++++|+| ++. +++.+.++++|+.+ |....+..+ ..++....
T Consensus 725 ~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~~-~~~~~~~~~ 802 (995)
T 2fge_A 725 EFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLVT-WDGRLPLRN 802 (995)
T ss_dssp HHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSCC-CCCCCCCCC
T ss_pred HHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCCc-ccccCCccc
Confidence 11 457888 99999999999999999999999 994 89999999999988 754432211 11111111
Q ss_pred -EeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeecccc
Q 013646 230 -RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY 308 (439)
Q Consensus 230 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~ 308 (439)
.+..+ ....++..+++... .++++.+++.|++.+|++ ++||+.||+ .|++|++++++..
T Consensus 803 ~~~~~~--~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe-~g~aYg~~s~~~~- 862 (995)
T 2fge_A 803 EAIVIP--TQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV-SGGAYGGFCDFDS- 862 (995)
T ss_dssp EEEECS--CSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-TTCCSEEEEEEET-
T ss_pred eEEEec--CceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-cCCCcccceEeCC-
Confidence 22233 35666666666554 588999999999999995 699999999 8889999998765
Q ss_pred CCcceEE-EEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCC
Q 013646 309 NHSGMFG-IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP 387 (439)
Q Consensus 309 ~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (439)
.|.+. ++...+| +..++++.+.+.++.+...+ ++++||+++|..+++++ ....++...+...+...+.+...+.
T Consensus 863 --~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~-~~~~~~~~~~~~~~~~~~~g~~~~~ 937 (995)
T 2fge_A 863 --HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDV-DSYQLPDAKGYSSLLRHLLGVTDEE 937 (995)
T ss_dssp --TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTCCHHH
T ss_pred --CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcCcCHHH
Confidence 37777 7766666 46777777777777776654 99999999999999998 4566777777766665553322356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhC--CCCeEEEecCCCCCCCH
Q 013646 388 VEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVPSY 429 (439)
Q Consensus 388 ~~~~~~~i~~vt~~dv~~~a~~~l~--~~~~~~v~g~~~~~~~~ 429 (439)
.+++.+.|.+||.+||+++|++|+. ++..++|+|+...+++.
T Consensus 938 ~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 938 RQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 7889999999999999999999997 47899999987655544
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.5e-32 Score=292.16 Aligned_cols=371 Identities=9% Similarity=0.039 Sum_probs=292.3
Q ss_pred CeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHHH
Q 013646 27 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVEL 106 (439)
Q Consensus 27 ~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 106 (439)
|.+.|.+.+.+|...+++.+.|+++++.+|+..|+.++ .......|.+++.+. .+.+.+.+++.+++++.+|++
T Consensus 523 p~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~-----~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~l 596 (939)
T 1q2l_A 523 PKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL-----SNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQA 596 (939)
T ss_dssp SEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHH
T ss_pred CcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHH
Confidence 49999999999999888778899999999998776543 222344677778888 899999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCC
Q 013646 107 LIDCVRNPVFLDWEVNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTG 185 (439)
Q Consensus 107 l~~~l~~~~~~~~~~~~~k~~~~~e~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~ 185 (439)
+.+.+.+|.|++++|+++|+.++++++.. .++|...+.+.+...+|+. + ++..++.+.|.+++.+++++|++++|.+
T Consensus 597 l~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~~~~~~l~~it~~~l~~f~~~~~~~ 674 (939)
T 1q2l_A 597 LLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRDERRKILPSITLKEVLAYRDALKSG 674 (939)
T ss_dssp HHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHHHHHHHGGGCCHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999977 5679998999888888732 2 4445788999999999999999999999
Q ss_pred CCeEEEEcC-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CcccCCce-EeecCCCCCceEE-EEEEecCCCCCCCcchHH
Q 013646 186 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGGDY-RCQADSGDQLTHF-VLAFELPGGWHKDKDAMT 260 (439)
Q Consensus 186 ~~~~l~ivG-~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~ 260 (439)
.+++++|+| ++.++++++++++++.++..+...... +....+.. .+..+.+..++.+ .+.|+.+. .+.++.+.
T Consensus 675 ~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 752 (939)
T 1q2l_A 675 ARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGY--DEYTSSAY 752 (939)
T ss_dssp CEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSSSCEEEEEEEECSSC--CHHHHHHH
T ss_pred heEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCCCCceeEEEEEecCC--CCHHHHHH
Confidence 999999999 999999999999988776543221111 11122222 2222222234445 56666542 34445556
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccC-Ccc-eEEEEE-eeChhhHHHHHHHHHHHHH
Q 013646 261 LTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYN-HSG-MFGIQG-TTGSDFVSKAIDLAARELI 337 (439)
Q Consensus 261 ~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~-~~~-~~~i~~-~~~~~~~~~~~~~~~~~~~ 337 (439)
+.+|..++. ++||+.||++.|++|+++++..... ..| .|.++. .++|+++.++++.+.+++.
T Consensus 753 ~~lL~~~~~---------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~ 817 (939)
T 1q2l_A 753 SSLLGQIVQ---------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAE 817 (939)
T ss_dssp HHHHHHHHH---------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 666666655 9999999999999999999876433 334 255555 5689999999999999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCHHHHHHHHHHhhC--CC
Q 013646 338 SVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLS--SP 414 (439)
Q Consensus 338 ~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vt~~dv~~~a~~~l~--~~ 414 (439)
++.+ | ++++||+++|+.++.++....++....+..+|..+...+.. +..+++.+.|++||++||++++++++. +.
T Consensus 818 ~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~ 895 (939)
T 1q2l_A 818 AKLR-A-MKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQG 895 (939)
T ss_dssp HHHH-T-CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSS
T ss_pred HHHH-h-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Confidence 9875 6 99999999999999999999999988888888777644433 457889999999999999999999875 33
Q ss_pred C--eEEEecCCC
Q 013646 415 L--TMASYGDVI 424 (439)
Q Consensus 415 ~--~~~v~g~~~ 424 (439)
. ++.++|+..
T Consensus 896 ~~l~v~v~G~~~ 907 (939)
T 1q2l_A 896 MAILSQISGSQN 907 (939)
T ss_dssp EEEEEEECCSSH
T ss_pred CEEEEEEecCCC
Confidence 4 345888863
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=3e-30 Score=275.73 Aligned_cols=375 Identities=9% Similarity=0.052 Sum_probs=297.3
Q ss_pred CCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHH
Q 013646 26 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVE 105 (439)
Q Consensus 26 ~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (439)
.|...+.+.+.+|...+++...++++++..|+..+ ++..++...+ .|.++++.++.+.+.+++++.+++++.+|+
T Consensus 540 ~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ 614 (990)
T 3cww_A 540 LPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLK 614 (990)
T ss_dssp CSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHH
T ss_pred CCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHH
Confidence 56888888888887777778889999999998753 3455555555 478899999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhCC
Q 013646 106 LLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN-NPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 184 (439)
Q Consensus 106 ll~~~l~~~~~~~~~~~~~k~~~~~e~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~ 184 (439)
++.+++.+|.|+++.|+++|+.++..+..... +|...+...+...++.+++.. .+..+.|.+++.++|++|++++|.
T Consensus 615 ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~--~~~~~~l~~lt~~~l~~~~~~~~~ 692 (990)
T 3cww_A 615 KIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK--DELKEALADVTLPRLKAFIPQLLS 692 (990)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCH--HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCH--HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999997766 899999999988887544442 247789999999999999999999
Q ss_pred CCCeEEEEcC-CCHHHHHHH---HHhhcCCCCCC-CCCC----C-CCCcccCCce-Eee-cCCCCCceEEEEEEecCCCC
Q 013646 185 GPRMVLAASG-VEHDQLVSV---AEPLLSDLPSI-HPRE----E-PKSVYTGGDY-RCQ-ADSGDQLTHFVLAFELPGGW 252 (439)
Q Consensus 185 ~~~~~l~ivG-~~~~~~~~~---i~~~~~~~~~~-~~~~----~-~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~ 252 (439)
+.+++++++| ++.+++.++ +.++++.+|.. +.+. . .....+.+.. .+. ......++.+.+.+..+.
T Consensus 693 ~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 770 (990)
T 3cww_A 693 RLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM-- 770 (990)
T ss_dssp EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEE--
T ss_pred hheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCC--
Confidence 9999999999 999999887 66777765532 1110 0 1011122222 221 222235666666677654
Q ss_pred CCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEE--EEeeChhhHHHHHH
Q 013646 253 HKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI--QGTTGSDFVSKAID 330 (439)
Q Consensus 253 ~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~ 330 (439)
.+.++.+++.|++.+|+ +++|.+||++.|++|++++++....+...+.+ +..++|+++.++++
T Consensus 771 ~~~~~~~~l~ll~~il~---------------~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~ 835 (990)
T 3cww_A 771 QSTSENMFLELFAQIIS---------------EPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVE 835 (990)
T ss_dssp CCHHHHHHHHHHHHHHH---------------HHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHH
Confidence 57889999999999997 89999999999999999998766544333333 44457889999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCHHHHHHHHHH
Q 013646 331 LAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQK 409 (439)
Q Consensus 331 ~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vt~~dv~~~a~~ 409 (439)
.+.+++..+++ + ++++||+++|..++.++....+++...+..+|..+..++.. +..+++.+.|.++|++||++++++
T Consensus 836 ~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~ 913 (990)
T 3cww_A 836 AFLITMEKSIE-D-MTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKE 913 (990)
T ss_dssp HHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999988 6 99999999999999999988889888888787777644423 456788999999999999999999
Q ss_pred hhC------CCCeEEEecCCCCC
Q 013646 410 LLS------SPLTMASYGDVINV 426 (439)
Q Consensus 410 ~l~------~~~~~~v~g~~~~~ 426 (439)
++. ++..++|+|+....
T Consensus 914 ~l~~~~~~~~~~~v~v~g~~~~~ 936 (990)
T 3cww_A 914 MLAVDAPRRHKVSVHVLAREMDS 936 (990)
T ss_dssp HTSTTCTTCEEEEEEEECTTC--
T ss_pred HhhccCCCCCEEEEEEECCCCcc
Confidence 986 35678899987644
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.97 E-value=9.9e-31 Score=276.57 Aligned_cols=374 Identities=12% Similarity=0.066 Sum_probs=276.7
Q ss_pred CccCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhccC-CCCCCCHHHHHHHHHHcCCeeeeeec--------------
Q 013646 21 KHQWYSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQASAS-------------- 85 (439)
Q Consensus 21 ~~~~~~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~-g~~~~~~~~l~~~l~~~g~~~~~~~~-------------- 85 (439)
++...++++++.+.|+.|... .+..++..|+..++.+ ||+++++.++.+.++.++|++++.++
T Consensus 732 ~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~ 809 (1193)
T 3s5m_A 732 YEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKY 809 (1193)
T ss_dssp EECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTT
T ss_pred EECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccc
Confidence 566777999999999999644 4677888898888875 99999999999999999998887763
Q ss_pred --CceEEEEEEecCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhc-CCCCCCCC
Q 013646 86 --REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGY-SGALANPL 160 (439)
Q Consensus 86 --~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~~~~~~-~~~~k~~~~~e~~~-~~~~~~~~~~~~l~~~~~-~~~~~~~~ 160 (439)
..++.+++.++.++++.+++++.+++.+|.|++.+ +.......+..+.. ...++...+...+...+. .++|....
T Consensus 810 ~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~ 889 (1193)
T 3s5m_A 810 NAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNII 889 (1193)
T ss_dssp CCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred cccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhh
Confidence 34578999999999999999999999999999764 55444444444443 234445555555555444 33343332
Q ss_pred CCChhhhccCC-------------HHHHHHHHHhhCCCCCeEEEEcC-CC-HHHHHHHHHhhcCCCCC----CCC-----
Q 013646 161 LAPESAINRLN-------------STLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS----IHP----- 216 (439)
Q Consensus 161 ~g~~~~l~~i~-------------~~~l~~~~~~~~~~~~~~l~ivG-~~-~~~~~~~i~~~~~~~~~----~~~----- 216 (439)
.| ...+..++ .++|+++++++|+++|+++.++| .+ .+++.+.++++++.++. ...
T Consensus 890 ~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 968 (1193)
T 3s5m_A 890 YG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDM 968 (1193)
T ss_dssp HS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCC
T ss_pred CC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 22 22222222 67999999999999999999999 75 57777666666554431 000
Q ss_pred -----CCC-C-C-------Ccc-cCCc--eEeecCCCCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCC
Q 013646 217 -----REE-P-K-------SVY-TGGD--YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGP 279 (439)
Q Consensus 217 -----~~~-~-~-------~~~-~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~ 279 (439)
... . . ..+ .... ..+..+. ++.++..+++... ..+++++++.|++.+||+
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~--------- 1035 (1193)
T 3s5m_A 969 QNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT--FVNSVSMSGILFK--PGEYLDPSFTVIVAALKN--------- 1035 (1193)
T ss_dssp CSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC--SSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH---------
T ss_pred ccccccccccccccccccccccccccccceeEecCC--cceEEEEEecCCC--CCCCchHHHHHHHHHHCc---------
Confidence 000 0 0 001 1111 2333444 8899999988776 688999999999999995
Q ss_pred CCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEEEeeChhhHHHHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHH
Q 013646 280 GKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQVQLDRAKQST 357 (439)
Q Consensus 280 ~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~g~i~~~el~~ak~~l 357 (439)
++||++||+++| +|++++++. ..|.|.++...+| +..++++.+.++++.+.+ +| +|++||++||..+
T Consensus 1036 -----~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~~~~-~teeEL~~ak~~~ 1104 (1193)
T 3s5m_A 1036 -----SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKMADT-MTENDLLRYIINT 1104 (1193)
T ss_dssp -----THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHHHHH-CCHHHHHHHHHHH
T ss_pred -----cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHH
Confidence 799999999877 999999876 4577877776666 467777777776666654 46 9999999999999
Q ss_pred HHHHHHcccChHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCHHHHHHHHHHhhCC----CCeEEEecCC
Q 013646 358 KSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLSS----PLTMASYGDV 423 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vt~~dv~~~a~~~l~~----~~~~~v~g~~ 423 (439)
++++. ...++...+.......+ .|.+ +..+++.+.|.+||++||+++|++|+.. +..++++|+.
T Consensus 1105 ~~~~d-~p~~p~~~a~~~~~~~~-~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~ 1173 (1193)
T 3s5m_A 1105 IGTID-KPRRGIELSKLSFLRLI-SNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTK 1173 (1193)
T ss_dssp HHHHS-CCCCTHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECH
T ss_pred Hhccc-ccCChHHHHHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCH
Confidence 99864 55677777777766666 4544 5688999999999999999999999863 6899999985
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.92 E-value=5.5e-24 Score=183.60 Aligned_cols=171 Identities=17% Similarity=0.146 Sum_probs=155.5
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 317 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~ 317 (439)
+++.+.++|++|+ .++++.+++.|++.+|+++ ++|+||+.||++ |++|+++++...+.+.|.|.++
T Consensus 23 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~ 88 (197)
T 3ih6_A 23 GTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFG 88 (197)
T ss_dssp CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEE
T ss_pred CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCeEEEEE
Confidence 8999999999997 6789999999999999976 449999999986 9999999988778889999999
Q ss_pred EeeChh-hHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 013646 318 GTTGSD-FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE 396 (439)
Q Consensus 318 ~~~~~~-~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 396 (439)
+.+.|+ +.+++.+.+.+++.++.++| ++++||+++|+.++.++....+++..++..++...+. |++....++.+.|+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~-g~~~~~~~~~~~i~ 166 (197)
T 3ih6_A 89 AQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIAS-GDWRLFFLQRDRVR 166 (197)
T ss_dssp EECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHT-TCTTHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 999998 59999999999999999887 9999999999999999999999999999999888774 66667889999999
Q ss_pred cCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 397 GVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 397 ~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
+||++||++++++||. ++.++++++|..
T Consensus 167 ~vT~~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 167 EAKLDDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp TCCHHHHHHHHHHHSSGGGCEEEEECC--
T ss_pred hCCHHHHHHHHHHhCCccCeEEEEEeCCC
Confidence 9999999999999998 888899999853
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.44 E-value=6.2e-06 Score=70.01 Aligned_cols=161 Identities=5% Similarity=-0.036 Sum_probs=113.4
Q ss_pred CCeEEEEEEEccccCCCCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHcCCeeeee--e----cCceEEEEEEecCC-
Q 013646 26 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS--A----SREQMGYSFDALKT- 98 (439)
Q Consensus 26 ~~~v~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~--~----~~~~~~~~~~~~~~- 98 (439)
.+...+.+.+.+....++ ..-...++..++..|... .+.+.|...|..++++ . +...+.+.+.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~sS----rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPSS----RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTTS----HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCCc----hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 456777777777765543 345667778888655432 4444444445432222 2 23456667777666
Q ss_pred CHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHH
Q 013646 99 YVPEMVELLIDCVRNP---VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 175 (439)
Q Consensus 99 ~~~~~l~ll~~~l~~~---~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l 175 (439)
+.+.+++.+.+.+... .++++++++.|..++..+....+++...+.......+++.+ . ......+.|.++|.+|+
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~-~-~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDW-R-LFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCT-T-HHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCH-H-HHHHHHHHHHhCCHHHH
Confidence 6998988888777553 59999999999999999988888888887777666655321 1 11124578999999999
Q ss_pred HHHHHhhCCCCCeEEEEcC
Q 013646 176 EEFVAENYTGPRMVLAASG 194 (439)
Q Consensus 176 ~~~~~~~~~~~~~~l~ivG 194 (439)
+++.++++.+++.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999988887
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.23 E-value=0.0001 Score=70.49 Aligned_cols=166 Identities=8% Similarity=0.046 Sum_probs=117.3
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcceE
Q 013646 238 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 314 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~--~~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~ 314 (439)
+.+.+.+.++.+. ... ......+++..++..|+. .+. ..+.+.+ +..|...++++.. -..
T Consensus 22 ~~~~~~l~~~~Gs--~~e~~~~~G~ah~leh~lf~gt~--------~~~~~~~~~~l-~~~G~~~na~t~~------d~t 84 (421)
T 3hdi_A 22 RSVSIGIWVGTGS--RYESAEENGISHFLEHMFFKGTN--------TRSAQEIAEFF-DSIGGQVNAFTSK------EYT 84 (421)
T ss_dssp SEEEEEEEESCCG--GGCCGGGTTHHHHHHHHTTSBBS--------SSBHHHHHHHH-HTTTSCEEEEECS------SCE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC--------CCCHHHHHHHH-HHhCCceeeeecc------ceE
Confidence 5677888887765 333 235567788888876532 111 2455555 3456555444432 234
Q ss_pred EEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHH
Q 013646 315 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 392 (439)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 392 (439)
.+++.+.+++..++++.+.+.+.+- .+++++|++.|..++.++....+++...+.......++.+.+ .+..-..
T Consensus 85 ~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 160 (421)
T 3hdi_A 85 CYYAKVLDDHAGQAIDTLSDMFFHS----TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTV 160 (421)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCH
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 5566777788888888888776553 499999999999999999888888888887666655544433 1222246
Q ss_pred HHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 393 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 393 ~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
+.|.++|.+|+.++.++++. ++..++++|+..
T Consensus 161 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 161 ETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH 193 (421)
T ss_dssp HHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC
Confidence 88899999999999999999 899999999875
No 25
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.21 E-value=5.1e-05 Score=72.57 Aligned_cols=171 Identities=9% Similarity=0.054 Sum_probs=112.8
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcch-HHHHHHHhhCCCeeEEEeeccccCCcceEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYS-RLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 316 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s-~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i 316 (439)
+.+.+.+.++++.............++..++..|+. +. .| .++. .+.+.+ +..|..++++... ..+.+
T Consensus 24 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~-~~--~~-~~~~~~~~~~l-~~~G~~~~a~t~~------~~t~~ 92 (424)
T 3amj_B 24 PMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTG-SG--KS-ALDENAIADRL-ADIGARLGGGAEA------DRASF 92 (424)
T ss_dssp SEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEEC-ST--TS-CEEHHHHHHHH-HHTTCEEEEEECS------SCEEE
T ss_pred CEEEEEEEEecCCccCCCccchHHHHHHHHHHhccC-CC--cc-CCCHHHHHHHH-HHhCCEEEeecCC------CeEEE
Confidence 577777888776521122345677888888864310 00 00 1222 344444 3456555554432 13555
Q ss_pred EEeeChhhH--HHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC-CCHHHHHH
Q 013646 317 QGTTGSDFV--SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLK 393 (439)
Q Consensus 317 ~~~~~~~~~--~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 393 (439)
++.+.+++. ..+++.+.+.+.+. .+++++|++.|..++.++....+++...+.......++.+.+ .... ..+
T Consensus 93 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~ 167 (424)
T 3amj_B 93 SLRVLSSPAERNSALTILRDILAHP----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVA 167 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHH
T ss_pred EEEEeccccChhHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHH
Confidence 666666666 77777777666543 599999999999999998887778888776666555544433 1111 567
Q ss_pred HHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 394 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 394 ~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
.|.++|.++++++.++++. ++..++++|+..
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~ 199 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDIT 199 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 8899999999999999998 999999999864
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.19 E-value=0.00015 Score=68.98 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=115.4
Q ss_pred CCceEEEEEEecCCCCCCCc--chHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcce
Q 013646 237 DQLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGM 313 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~~--~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~ 313 (439)
.+.+.+.+.+..+. ...+ .....+++..++..|+. .+. ..+.+.+. ..|...++++.. -.
T Consensus 21 ~~~~~~~l~~~~Gs--~~e~~~~~G~ah~lehmlf~Gt~--------~~~~~~~~~~l~-~~G~~~na~t~~------d~ 83 (406)
T 3eoq_A 21 ARSVALGYFVKTGA--RDETKEESGVSHFLEHMVFKGPE--------DMDALAVNRAFD-RMGAQYNAFTSE------EA 83 (406)
T ss_dssp CSCEEEEEEESCSG--GGSCGGGTTHHHHHHHHHTTCCT--------TCCHHHHHHHHH-HTTCEEEEEECS------SC
T ss_pred CCeEEEEEEEcccc--CCCCCCCCCHHHHHHHHHhCCCC--------CCCHHHHHHHHH-HhCCCccceecC------Ce
Confidence 36778888888764 3332 35667888888876532 111 24555553 456444444332 23
Q ss_pred EEEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHH
Q 013646 314 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHF 391 (439)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 391 (439)
..+++.+.+++..++++.+.+.+ + +.+++++|++.|..++.++....+++...+.......++.+.+ .+..-.
T Consensus 84 t~y~~~~~~~~l~~~l~ll~d~~-~----p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 158 (406)
T 3eoq_A 84 TVYYGAVLPEFAYDLLGLFAKLL-R----PALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGT 158 (406)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHT-S----CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCC
T ss_pred EEEEEEecHHHHHHHHHHHHHHh-c----CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 55667788888888887776665 3 3599999999999999999888888988887666655544433 122224
Q ss_pred HHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCC
Q 013646 392 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 423 (439)
Q Consensus 392 ~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~ 423 (439)
.+.|.++|.+|++++.++++. ++..++++|+.
T Consensus 159 ~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~ 191 (406)
T 3eoq_A 159 RESITALTREGMAAYHRRRYLPKNMVLAATGRV 191 (406)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESC
T ss_pred HHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCC
Confidence 578899999999999999998 99999999996
No 27
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=98.15 E-value=8.9e-05 Score=68.98 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=111.7
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcceEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 316 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i 316 (439)
+.+.+.+.+++.. .........+++..++..|+. .++ ..+.+.+. ..|..++++.. ...+.+
T Consensus 11 ~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~--------~~~~~~l~~~l~-~~G~~~na~t~------~~~t~~ 73 (352)
T 3cx5_B 11 KISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTN--------TRSALKLVRESE-LLGGTFKSTLD------REYITL 73 (352)
T ss_dssp SEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBS--------SSCHHHHHHHHH-HHTCEEEEEEC------SSCEEE
T ss_pred ceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcC--------CCCHHHHHHHHH-HhCCeEEEEEc------cceEEE
Confidence 5666777777654 334456778888888875432 111 23555553 45655444432 224566
Q ss_pred EEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 013646 317 QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD-RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV 395 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~-~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (439)
++.+.++++..+++.+.+.+.+- .+++++|+ +.|..++.++....+++...+........+. .+-......+.|
T Consensus 74 ~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~~~~l 148 (352)
T 3cx5_B 74 KATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLLYDGV 148 (352)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSSCCSS
T ss_pred EEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccchhhh
Confidence 77777788888888888777654 49999998 9999999988887788888776555544433 221111125789
Q ss_pred hcCCHHHHHHHHHHhhC-CCCeEEEec
Q 013646 396 EGVTAKDIASVAQKLLS-SPLTMASYG 421 (439)
Q Consensus 396 ~~vt~~dv~~~a~~~l~-~~~~~~v~g 421 (439)
+++|.+|+.++.++++. ++..++++|
T Consensus 149 ~~it~~~l~~f~~~~y~~~n~~l~v~G 175 (352)
T 3cx5_B 149 ERVSLQDIKDFADKVYTKENLEVSGEN 175 (352)
T ss_dssp SCCCHHHHHHHHHHHCCGGGEEEEEES
T ss_pred ccCCHHHHHHHHHHhCCcCcEEEEEeC
Confidence 99999999999999998 888899998
No 28
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.13 E-value=0.00013 Score=70.31 Aligned_cols=167 Identities=13% Similarity=0.038 Sum_probs=113.9
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEE
Q 013646 238 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 315 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~--~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~ 315 (439)
+.+.+.+.++.+. ... ......+++..++..|+.-. -...+.+.+. ..|...+++... -.+.
T Consensus 33 ~~~~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT~~~-------~~~~~~~~l~-~~G~~~na~t~~------d~t~ 96 (446)
T 1pp9_A 33 PTCTVGVWIDAGS--RYESEKNNGAGYFVEHLAFKGTKNR-------PGNALEKEVE-SMGAHLNAYSTR------EHTA 96 (446)
T ss_dssp SEEEEEEEESCSG--GGCCTTTTTHHHHHHHHTTSCBSSS-------TTTHHHHHHH-HTTCEEEEEECS------SCEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCCCC-------CHHHHHHHHH-HcCCEEEEEEcC------CeEE
Confidence 6777778777764 332 24566788888887553200 0123545554 355444443321 1245
Q ss_pred EEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 013646 316 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLK 393 (439)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 393 (439)
+++.+..++..++++.+.+.+.+- .+++++|++.|..++.++....+++..++.......++.+.+ .+..-..+
T Consensus 97 ~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 172 (446)
T 1pp9_A 97 YYIKALSKDLPKAVELLADIVQNC----SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSE 172 (446)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 666777788888888888877664 599999999999999998887788887776655554433322 11222467
Q ss_pred HHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 394 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 394 ~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
.|.++|.++++++.++++. ++..++++|+..
T Consensus 173 ~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 173 NVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 7889999999999999998 899999999864
No 29
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.13 E-value=0.00012 Score=71.17 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=115.2
Q ss_pred CCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcceEE
Q 013646 237 DQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 315 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~ 315 (439)
.+.+.+.+.++.+............+++..++..++. .++ ..+.+.+ +..|..++++... -...
T Consensus 24 ~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~--------~~~~~~~~~~l-e~~G~~~na~t~~------d~t~ 88 (475)
T 1hr6_A 24 GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTE--------HVEGRAMAETL-ELLGGNYQCTSSR------ENLM 88 (475)
T ss_dssp CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBT--------TBCHHHHHHHH-HHTTSCEEEEECS------SCEE
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCC--------CCCHHHHHHHH-HHcCCEEEEEEcc------CeEE
Confidence 4778888888776521112345677888888776532 111 2344444 3456555544321 2356
Q ss_pred EEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 013646 316 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLK 393 (439)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 393 (439)
+++.+.++++..+++.+.+.+.+. .+++++|++.|..++.++....+++...+.......++.+.+ .+..-..+
T Consensus 89 y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~ 164 (475)
T 1hr6_A 89 YQASVFNQDVGKMLQLMSETVRFP----KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRG 164 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGG
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 677778888888888888776654 599999999999999998887788888777666655544332 12222457
Q ss_pred HHhcCCHHHHHHHHHHhhC-CCCeEEEecCC
Q 013646 394 TVEGVTAKDIASVAQKLLS-SPLTMASYGDV 423 (439)
Q Consensus 394 ~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~ 423 (439)
.|.++|.+||+++.++++. ++..++++| .
T Consensus 165 ~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~ 194 (475)
T 1hr6_A 165 LIPSISKYYLLDYRNKFYTPENTVAAFVG-V 194 (475)
T ss_dssp GGGGCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred HHhhcCHHHHHHHHHHhCCcccEEEEEeC-C
Confidence 8899999999999999998 889999999 5
No 30
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.09 E-value=0.00018 Score=68.77 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=112.8
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceEEEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 317 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~i~ 317 (439)
+.+.+.+.++++............+++..++..++ .. ..-+..|..++++... ..+.++
T Consensus 21 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt------------~~---~~~~~~G~~~na~t~~------~~t~~~ 79 (431)
T 3cx5_A 21 HTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKE------------NS---AVAAKEGLALSSNISR------DFQSYI 79 (431)
T ss_dssp SSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHH------------HH---HHHHHTTCEEEEEECS------SCEEEE
T ss_pred CEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCC------------Cc---ccHHHcCCeeeeeecC------CeEEEE
Confidence 67788888887652111235677788888887531 11 1224566555554432 235667
Q ss_pred EeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHhcCCC--CCHHHHHHH
Q 013646 318 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSEDIGRQVLTYGER--KPVEHFLKT 394 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~ 394 (439)
+.+.++++.++++.+.+.+.+..-.. +++++|++.|..++.++....+++ ...+.......++.+.+ .+..-..+.
T Consensus 80 ~~~~~~~l~~~l~ll~~~~~~p~~~~-f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (431)
T 3cx5_A 80 VSSLPGSTDKSLDFLNQSFIQQKANL-LSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLES 158 (431)
T ss_dssp EEECSTTHHHHHHHHHHHHHTCSTTT-TCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHH
T ss_pred EEechhhHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHH
Confidence 77777888888888887776532100 899999999999999887766677 77665555555533333 222335688
Q ss_pred HhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 395 VEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 395 i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
|.++|.+|++++.++++. ++..++++|+..
T Consensus 159 l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 189 (431)
T 3cx5_A 159 LENLVVADLESFANNHFLNSNAVVVGTGNIK 189 (431)
T ss_dssp HHTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HhhCCHHHHHHHHHhcCCCCcEEEEEEcCCC
Confidence 899999999999999998 889999999864
No 31
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.09 E-value=0.00024 Score=68.20 Aligned_cols=167 Identities=8% Similarity=0.008 Sum_probs=113.5
Q ss_pred CCCceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcceE
Q 013646 236 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 314 (439)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~ 314 (439)
..+.+.+.+.++++............+++..++..|+. .++ ..+.+.+. ..|..++++.. ...+
T Consensus 41 ~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~--------~~~~~~~~~~l~-~~G~~~na~t~------~~~t 105 (439)
T 1pp9_B 41 YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTK--------GASSFKITRGIE-AVGGKLSVTST------RENM 105 (439)
T ss_dssp CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBS--------SSCHHHHHHHHH-HTTCEEEEEEC------SSCE
T ss_pred CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCC--------cCCHHHHHHHHH-HhCCeEEEEec------ceEE
Confidence 34677788888776521112345677888888865421 111 23444443 45655554432 2345
Q ss_pred EEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHH
Q 013646 315 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 392 (439)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 392 (439)
.+++.+.++++..+++.+.+.+.+. .+++++|++.|..++.++....+++...+.......++. .+ .+.....
T Consensus 106 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~ 180 (439)
T 1pp9_B 106 AYTVECLRDDVDILMEFLLNVTTAP----EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPD 180 (439)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCG
T ss_pred EEEEEeehhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCH
Confidence 6677777888888888888776553 499999999999999998877778877776555554433 21 1122345
Q ss_pred HHHhcCCHHHHHHHHHHhhC-CCCeEEEecC
Q 013646 393 KTVEGVTAKDIASVAQKLLS-SPLTMASYGD 422 (439)
Q Consensus 393 ~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~ 422 (439)
+.|.++|.+|++++.++++. ++..++++|+
T Consensus 181 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 181 YRIGKVTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp GGTTTCCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred HHHhhcCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 67899999999999999998 8899999997
No 32
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.07 E-value=0.00036 Score=67.08 Aligned_cols=166 Identities=12% Similarity=0.045 Sum_probs=112.8
Q ss_pred CceEEEEEEecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcceE
Q 013646 238 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 314 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~--~~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~ 314 (439)
+.+.+.+.++++. ... ......+++..++..|+. .++ ..+.+.|. ..|...+++.. .-.+
T Consensus 27 ~~~~~~~~~~~Gs--~~e~~~~~G~ah~le~~~~~Gt~--------~~~~~~l~~~l~-~~g~~~na~t~------~~~t 89 (443)
T 1hr6_B 27 SSATVGIFVDAGS--RAENVKNNGTAHFLEHLAFKGTQ--------NRPQQGIELEIE-NIGSHLNAYTS------RENT 89 (443)
T ss_dssp SEEEEEEEEECSG--GGCCTTTTTHHHHHHHHTTSBBS--------SCBHHHHHHHHH-HTTCEEEEEEC------SSEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhhcCCC--------CCCHHHHHHHHH-HcCCeEEEEEC------CCeE
Confidence 3677778888765 332 245667788887765421 111 23544554 34544333332 1235
Q ss_pred EEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCC--CCHHHHH
Q 013646 315 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 392 (439)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 392 (439)
.+++.+.++++.++++.+.+.+.+- .+++++|++.|..++..+....+++...+.......++.+.+ .+..-..
T Consensus 90 ~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 165 (443)
T 1hr6_B 90 VYYAKSLQEDIPKAVDILSDILTKS----VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPI 165 (443)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 6667777788888888887776553 599999999999999998887788887776655555533332 1111246
Q ss_pred HHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 393 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 393 ~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
+.|.++|.+++.++.++++. ++.+++++|+..
T Consensus 166 ~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~ 198 (443)
T 1hr6_B 166 KNIKSITRTDLKDYITKNYKGDRMVLAGAGAVD 198 (443)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCC
Confidence 77889999999999999998 899999999864
No 33
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.06 E-value=0.00013 Score=69.97 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=112.5
Q ss_pred CceEEEEEEecCCCCCCC-cchHHHHHHHHhhcCCCCCCCCCCCCCcc-hHHHHHHHhhCCCeeEEEeeccccCCcceEE
Q 013646 238 QLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 315 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~-~~~~~~~ll~~il~~~~~~~~~~~~~~~~-s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~ 315 (439)
+.+.+.+.+.++. ... .......++..++..|+. .++ ..+.+.+. ..|..++++... ..+.
T Consensus 34 ~~~~~~~~~~~Gs--~~e~~~~g~a~lle~ll~~gt~--------~~~~~~l~~~l~-~~g~~~~a~t~~------~~~~ 96 (434)
T 3gwb_A 34 PMFDLRLIFAAGS--SQDGNAPGVALLTNAMLNEGVA--------GKDVGAIAQGFE-GLGADFGNGAYK------DMAV 96 (434)
T ss_dssp SEEEEEEEESCSG--GGCTTSTTHHHHHHHHGGGEET--------TEEHHHHHHHHH-TTTCEEEEEECS------SCEE
T ss_pred CEEEEEEEEeccc--ccCCcchhHHHHHHHHHhcCcc--------cCCHHHHHHHHH-HhCCEEEeeecC------CeEE
Confidence 6777888888765 233 334566777777765421 111 22444443 456565554432 2344
Q ss_pred EEEeeChhh--HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCC--CHHHH
Q 013646 316 IQGTTGSDF--VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHF 391 (439)
Q Consensus 316 i~~~~~~~~--~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 391 (439)
+++.+.+++ ...+++.+.+.+.+- .+++++|++.|..++.++....+++...+.......++.+.+- ...-.
T Consensus 97 ~~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 172 (434)
T 3gwb_A 97 ASLRSLSAVDKREPALKLFAEVVGKP----TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGD 172 (434)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHHSC----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCC
T ss_pred EEEEecCccccHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 455555444 888888777766553 5999999999999999998888888888766665555444331 12124
Q ss_pred HHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 392 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 392 ~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
.+.|.++|.+|++++.++++. .+..++++|+..
T Consensus 173 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 173 AKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp TTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 578899999999999999998 889999999863
No 34
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.04 E-value=0.00027 Score=68.07 Aligned_cols=167 Identities=12% Similarity=0.090 Sum_probs=109.8
Q ss_pred CCceEEEEEEecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcchHHHHHHHhhCCCeeEEEeeccccCCcceE
Q 013646 237 DQLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 314 (439)
Q Consensus 237 ~~~~~i~~~~~~~~~~~~~--~~~~~~~ll~~il~~~~~~~~~~~~~~~~s~L~~~lR~~~g~~y~v~~~~~~~~~~~~~ 314 (439)
.+.+.+.+.+.++. ... ......+++..++..|+.-.+ ...+.+.|. ..|...+++... -..
T Consensus 26 ~~~v~~~~~~~~Gs--~~e~~~~~Glah~lehmlf~Gt~~~~-------~~~l~~~l~-~~g~~~na~t~~------d~t 89 (445)
T 3ami_A 26 APTLVHMVWYRVGS--MDETTGTTGVAHALEHMMFKGTKDVG-------PGEFSKRVA-AMGGRDNAFTTR------DYT 89 (445)
T ss_dssp SSEEEEEEEESCCG--GGCCTTCTTHHHHHHHHTTSCBSSSC-------TTHHHHHHH-HTTCEEEEEECS------SCE
T ss_pred CCeEEEEEEEeecc--CCCCCCCccHHHHHHHhhcCCCCCCC-------HHHHHHHHH-HhCCccccccCC------CeE
Confidence 36777777777654 222 245666777777765432000 134555554 455443333321 223
Q ss_pred EEEEeeChhhHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHH-HcccChHHHHHHHHHHHHhcCCCC--CHHHH
Q 013646 315 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL-MNLESRMVVSEDIGRQVLTYGERK--PVEHF 391 (439)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~el~~ak~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 391 (439)
.+++.+.++++..+++.+.+.+.+- .+++++|++.|..++.++. ...+++..++.......++.+.+- +..-.
T Consensus 90 ~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 165 (445)
T 3ami_A 90 AYYQQVPSSRLSDVMGLEADRMANL----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165 (445)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCC
T ss_pred EEEEECCHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 4455566778888888777766543 4999999999999999888 455678877665555555443331 11124
Q ss_pred HHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCC
Q 013646 392 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 423 (439)
Q Consensus 392 ~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~ 423 (439)
.+.|.++|.+++.++.++++. ++.+++++|+.
T Consensus 166 ~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~ 198 (445)
T 3ami_A 166 MNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDV 198 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESC
T ss_pred HHHHhhCCHHHHHHHHHHhCCccceEEEEEcCC
Confidence 688899999999999999998 89999999986
No 35
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.01 E-value=0.00026 Score=67.55 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=113.6
Q ss_pred CceEEEEEEecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCc-ch-HHHHHHHhhCCCeeEEEeeccccCCcceEE
Q 013646 238 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGM-YS-RLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 315 (439)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~ll~~il~~~~~~~~~~~~~~~-~s-~L~~~lR~~~g~~y~v~~~~~~~~~~~~~~ 315 (439)
+.+.+.+.+..+. .. ......+++..++..|+. .+ +. .+.+.+..-.|..++++...... ...+.
T Consensus 23 ~~~~~~~~~~~g~--~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~l~~~~G~~~~a~t~~~~t--~~~~~ 89 (425)
T 3d3y_A 23 KTVRLLVRFNTRL--NH-ETITKRTLLSSLMETNSL--------NYPNQVKLSERLAELYGASFGIGVSKKGN--QHWFN 89 (425)
T ss_dssp SEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHHHHHTTSCEEEEEEEEETT--EEEEE
T ss_pred ceEEEEEEEeCCC--Cc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHHHHHHhCceEeeeeeecCc--eEEEE
Confidence 6778888888765 23 335667788888764421 11 11 34444433226666665543211 12245
Q ss_pred EEEeeChh-------hHHHHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHh-cCCC
Q 013646 316 IQGTTGSD-------FVSKAIDLAARELISVA--TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-YGER 385 (439)
Q Consensus 316 i~~~~~~~-------~~~~~~~~~~~~~~~l~--~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 385 (439)
+++.+.++ ++..+++.+.+.+.+-. .. .+++++|++.|..++..+....+++...+.......++ .+.+
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~-~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~ 168 (425)
T 3d3y_A 90 ISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAG-QFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSED 168 (425)
T ss_dssp EEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETT-EECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTT
T ss_pred EEEEecChhhccchhHHHHHHHHHHHHHhCcccccC-CCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCC
Confidence 55555443 58888888877776531 11 18999999999999999888777888777666555554 2332
Q ss_pred --CCHHHHHHHHhcCCHHHHHHHHHHhhC-CCCeEEEecCCC
Q 013646 386 --KPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 424 (439)
Q Consensus 386 --~~~~~~~~~i~~vt~~dv~~~a~~~l~-~~~~~~v~g~~~ 424 (439)
.+..-..+.|.++|.+|+.++.++++. .+..++++|+..
T Consensus 169 ~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 169 QKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp TTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred ccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 122235678899999999999999998 899999999863
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.40 E-value=0.015 Score=56.49 Aligned_cols=174 Identities=10% Similarity=0.070 Sum_probs=102.2
Q ss_pred CCCeEEEEEEEccccCCCCCCCCcH-----HHHHHHhccCCCCCCCHHHHHHHHHH---cCCeeeeee----cCceEEEE
Q 013646 25 YSPVASISLYVGCGSIYESPISFGT-----THLLERMAFRSTRNRSHLRIVREVEA---IGGNVQASA----SREQMGYS 92 (439)
Q Consensus 25 ~~~~v~i~l~~~~G~~~e~~~~~g~-----a~l~~~l~~~g~~~~~~~~l~~~l~~---~g~~~~~~~----~~~~~~~~ 92 (439)
+.+...+.+.+++.....+. ...+ ..++..+++ ..+...+.. .|..++.+. ..+...+.
T Consensus 263 ~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg--------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~ 333 (492)
T 3go9_A 263 QAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALF--------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIH 333 (492)
T ss_dssp SCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccccccccCchhhhhhcceEEE
Confidence 34566777777776554432 1222 245555553 134333443 343333222 33445677
Q ss_pred EEecCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCCCC--CC
Q 013646 93 FDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVS-----NNPQSLLLEAIHSAGYSGALANPL--LA 162 (439)
Q Consensus 93 ~~~~~~~~~~~l~ll~~~l~~---~~~~~~~~~~~k~~~~~e~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~--~g 162 (439)
+.+..++.+.+++.+...+.. -.++++++++.|..++..+.... .++...+...+........+..+. ..
T Consensus 334 i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (492)
T 3go9_A 334 LNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQK 413 (492)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHH
T ss_pred EEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHH
Confidence 777888999988888777654 45999999999999888876532 334444555444443322221110 00
Q ss_pred Ch-hhhccCCHHHHHHHHHhhCCCCCeEEEEcC-C----CHHHHHHHHHhh
Q 013646 163 PE-SAINRLNSTLLEEFVAENYTGPRMVLAASG-V----EHDQLVSVAEPL 207 (439)
Q Consensus 163 ~~-~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG-~----~~~~~~~~i~~~ 207 (439)
.. +.|.++|.+|++++.++++.+++..+++.+ - +.+++.+..++.
T Consensus 414 ~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~~~ 464 (492)
T 3go9_A 414 LRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYNGI 464 (492)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHHHH
Confidence 11 448899999999999999997655555444 2 244455545444
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.82 E-value=32 Score=19.42 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 013646 330 DLAARELISVATPGEVDQVQLDRAKQS 356 (439)
Q Consensus 330 ~~~~~~~~~l~~~g~i~~~el~~ak~~ 356 (439)
..+..+++.+.++| ++.+|+......
T Consensus 3 aalkselqalkkeg-fspeelaalese 28 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 34567778888888 999998765444
No 38
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=42.35 E-value=25 Score=26.27 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Q 013646 322 SDFVSKAIDLAARELISV-ATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTA 400 (439)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l-~~~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 400 (439)
|..+.++++.++..+... .+.|.|+.+||..+.............+...+-..+...-..++...+.+++...+..++.
T Consensus 7 ~s~lE~~ie~l~~~F~~yd~ddG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~~ 86 (121)
T 4drw_A 7 PSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTI 86 (121)
T ss_dssp CCSHHHHHHHHHHTTGGGSCTTCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHH
Confidence 344666777777777765 2357899999998866544333333334444433333222322233678999998887764
No 39
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=30.48 E-value=1.4e+02 Score=20.89 Aligned_cols=75 Identities=3% Similarity=-0.005 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHhhh-CC---CCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCC-CCCHHHHHHHHhcC
Q 013646 324 FVSKAIDLAARELISVA-TP---GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGV 398 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~l~-~~---g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v 398 (439)
.+.+.+..+.+.+..+- ++ |.|+.+||..+.............+. ..+..+....=..++ ..+.+++...+..+
T Consensus 5 ~le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~-~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~ 83 (98)
T 3n22_A 5 SLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDE-EGLKKLMGSLDENSDQQVDFQEYAVFLALI 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCH-HHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45667777777777763 22 37999999988775333322222222 334444433221222 25678887777654
Q ss_pred C
Q 013646 399 T 399 (439)
Q Consensus 399 t 399 (439)
+
T Consensus 84 ~ 84 (98)
T 3n22_A 84 T 84 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=28.37 E-value=1.2e+02 Score=19.95 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCeeeeeecCceEEEEEEecCCCHHHHHHHHHHhhhC
Q 013646 67 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRN 113 (439)
Q Consensus 67 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~ 113 (439)
..+..+|...++.+--....+...+.+.++.++.+.+.+.|.++...
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 34677888898876655556678899999999999999998887654
No 41
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=27.33 E-value=59 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=37.8
Q ss_pred cCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC
Q 013646 152 YSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 194 (439)
Q Consensus 152 ~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG 194 (439)
|++++.+...+....|++.+.++...=..+.|...++++.++|
T Consensus 32 Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 32 YNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp ECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred ecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 3778888888889999999999988888889999999999988
No 42
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=27.03 E-value=1.3e+02 Score=20.68 Aligned_cols=74 Identities=7% Similarity=0.090 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhh-CC---CCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCC-CCCHHHHHHHHhcCC
Q 013646 325 VSKAIDLAARELISVA-TP---GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGVT 399 (439)
Q Consensus 325 ~~~~~~~~~~~~~~l~-~~---g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~vt 399 (439)
+.+.+..+.+.+..+- ++ |.|+.+||..+.............+ ......+....=..++ ..+.+++...+..++
T Consensus 5 le~~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~-~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~ 83 (93)
T 4eto_A 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTD-EAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CC-HHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCC-HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence 5666677777777663 22 4799999988866422211111112 2333444433221222 256888877776544
No 43
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.82 E-value=1.1e+02 Score=18.13 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 013646 115 VFLDWEVNEQLTKVKSEISEV 135 (439)
Q Consensus 115 ~~~~~~~~~~k~~~~~e~~~~ 135 (439)
..+..++++.|+.+++|++..
T Consensus 3 ~~~~~dle~~KqEIL~E~RkE 23 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKE 23 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 356778899998888888754
No 44
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=24.77 E-value=55 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=38.0
Q ss_pred cCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEcC
Q 013646 152 YSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 194 (439)
Q Consensus 152 ~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~ivG 194 (439)
|++++.+...+..+.|.+.+.++...=..+.|....+++.+.|
T Consensus 62 Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 62 YNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp ECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred ecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 3788888888999999999999888888888988999999988
No 45
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=20.95 E-value=1.8e+02 Score=20.62 Aligned_cols=75 Identities=7% Similarity=0.085 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHhhh-CC---CCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCC-CCCHHHHHHHHhcC
Q 013646 324 FVSKAIDLAARELISVA-TP---GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGV 398 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~l~-~~---g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v 398 (439)
.+.+.+..+.+.+..+- .+ |.|+.+||..+........... ......+..+....=..++ ..+.+++...+..+
T Consensus 7 ~le~~~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~-~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~ 85 (104)
T 3zwh_A 7 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGK-RTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSI 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCS-SCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccC-CCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence 46666777777777663 22 3699999988866422211111 1123334444443322222 35788888877654
Q ss_pred C
Q 013646 399 T 399 (439)
Q Consensus 399 t 399 (439)
+
T Consensus 86 ~ 86 (104)
T 3zwh_A 86 A 86 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=20.94 E-value=54 Score=23.24 Aligned_cols=76 Identities=9% Similarity=0.194 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHhhhC-----CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHhcCC-CCCHHHHHHHHh
Q 013646 323 DFVSKAIDLAARELISVAT-----PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVE 396 (439)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~-----~g~i~~~el~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 396 (439)
..+.++++.+.+.+..+-. .|.|+.+||..+...+....... .........+....=..++ ..+++++...+.
T Consensus 4 t~le~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~-~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~ 82 (100)
T 3nxa_A 4 TELEKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSD-TGNRKAADKLIQNLDANHDGRISFDEYWTLIG 82 (100)
T ss_dssp CHHHHHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCS-SHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccc-cccHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3467778888888888733 36899999998866532211100 0012233334333211222 256777777665
Q ss_pred cCC
Q 013646 397 GVT 399 (439)
Q Consensus 397 ~vt 399 (439)
.++
T Consensus 83 ~~~ 85 (100)
T 3nxa_A 83 GIT 85 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
Done!