BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013648
         (439 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q84ZT9|WVD2_ARATH Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
          Length = 202

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 66/95 (69%), Gaps = 2/95 (2%)

Query: 221 FRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLNFKATPMPTF 280
           FR  +RAEKR+E+Y KLEEK  A E E+  L+ + KE QEA IK LRK+L FKA P+P F
Sbjct: 89  FRSAQRAEKRKEYYQKLEEKHQALEAERIELEQRQKEEQEAAIKQLRKNLKFKANPVPDF 148

Query: 281 YQEPPPPKVELKKIPTTRAKSPKLG--RRKSSTPA 313
           Y + PP K ELKK P TR KSPKL   RRKS + A
Sbjct: 149 YYQRPPVKPELKKFPLTRPKSPKLNLSRRKSCSDA 183


>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1
          Length = 286

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 68/96 (70%), Gaps = 4/96 (4%)

Query: 217 YGFS--FRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLNFKA 274
           YG +  FR  +RAEKR+E+Y KLEEK  A E E++ L+ + K+ QEA +K LRK+L FKA
Sbjct: 122 YGSAPTFRSAQRAEKRKEYYQKLEEKNQALEAERNELEQRQKDEQEAALKQLRKNLKFKA 181

Query: 275 TPMPTFYQEPPPPKVELKKIPTTRAKSPK--LGRRK 308
            P+P FY E PP K ELKK+P TR KSPK  L RRK
Sbjct: 182 KPVPNFYYEAPPAKPELKKLPLTRPKSPKLILSRRK 217


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.301    0.121    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,155,442
Number of Sequences: 539616
Number of extensions: 7852217
Number of successful extensions: 29470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 1015
Number of HSP's that attempted gapping in prelim test: 27003
Number of HSP's gapped (non-prelim): 2987
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 63 (28.9 bits)