Query 013648
Match_columns 439
No_of_seqs 115 out of 133
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 14:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vp9_A General transcriptional 42.9 1E+02 0.0036 25.7 7.9 61 215-275 19-89 (92)
2 3nmd_A CGMP dependent protein 28.1 1.4E+02 0.0049 24.0 6.1 33 241-274 35-68 (72)
3 3qh9_A Liprin-beta-2; coiled-c 23.2 1.5E+02 0.0053 24.4 5.6 32 240-271 34-78 (81)
4 3k29_A Putative uncharacterize 20.8 2.5E+02 0.0087 25.7 7.1 57 215-271 3-65 (169)
5 4e29_A Chimeric WZZB chain len 20.3 2.1E+02 0.0072 27.1 6.7 47 225-271 114-160 (248)
6 3s9g_A Protein hexim1; cyclin 18.5 2.1E+02 0.0073 24.5 5.7 36 234-269 39-80 (104)
7 1gu4_A CAAT/enhancer binding p 17.5 3.4E+02 0.012 21.6 6.4 40 228-268 32-71 (78)
8 3a2a_A Voltage-gated hydrogen 16.3 2.6E+02 0.009 21.8 5.2 41 222-270 8-48 (58)
9 1t2k_D Cyclic-AMP-dependent tr 15.3 3.5E+02 0.012 19.9 6.4 41 228-269 18-58 (61)
10 4efa_G V-type proton ATPase su 13.6 3.5E+02 0.012 23.0 5.9 37 226-268 17-53 (119)
No 1
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.93 E-value=1e+02 Score=25.66 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=37.4
Q ss_pred CCCCcccchhH----HHHHHHHHHHHHHHHHhHHHHHHH------HHHHHhHHHHHHHHHHHHHhccccCC
Q 013648 215 PNYGFSFRCDE----RAEKRREFYSKLEEKIHAKEVEKS------TLQAKSKETQEAEIKMLRKSLNFKAT 275 (439)
Q Consensus 215 ~~s~F~frsDE----RAeKRKEFy~KLEEK~~AkEaEK~------qlQAKsKEEeEaEIKqLRKSLvFKAt 275 (439)
+...|..-+-+ |..+..+|..||.--+..+..=+. ..+.+-|+.=|+||.+||..|-=+..
T Consensus 19 ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 19 IRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp TTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556654444 556667898887665554443332 22335677779999999999865443
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.05 E-value=1.4e+02 Score=23.95 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHhc-cccC
Q 013648 241 IHAKEVEKSTLQAKSKETQEAEIKMLRKSL-NFKA 274 (439)
Q Consensus 241 ~~AkEaEK~qlQAKsKEEeEaEIKqLRKSL-vFKA 274 (439)
+.+++.....++.+. .+.+++|+.||..| .|+.
T Consensus 35 Lr~kd~~I~eLEk~L-~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELEL-DQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 666666666665554 45567899999988 4554
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.25 E-value=1.5e+02 Score=24.37 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHhH-------------HHHHHHHHHHHHhcc
Q 013648 240 KIHAKEVEKSTLQAKSK-------------ETQEAEIKMLRKSLN 271 (439)
Q Consensus 240 K~~AkEaEK~qlQAKsK-------------EEeEaEIKqLRKSLv 271 (439)
|...+|-||.|.+.+.| +..+++|+.|.-.|.
T Consensus 34 kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 34 KVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44448888888887644 455666666665554
No 4
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.81 E-value=2.5e+02 Score=25.74 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=36.6
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------hHHHHHHHHHHHHHhcc
Q 013648 215 PNYGFSFRCDERAEKRREFYSKLEEKIHAKEVEKSTLQAK------SKETQEAEIKMLRKSLN 271 (439)
Q Consensus 215 ~~s~F~frsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAK------sKEEeEaEIKqLRKSLv 271 (439)
|.|++.--.+.++.+--+-.+-+.+|..++|.|+..|+.. .+...-+.|.+||-.|.
T Consensus 3 ~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 3 VRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455443334443333333467889999999999888764 34555566999998664
No 5
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=20.33 E-value=2.1e+02 Score=27.08 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 013648 225 ERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSLN 271 (439)
Q Consensus 225 ERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSLv 271 (439)
.+.+-..+|...++.|...++.+....+...+.+.+..|.+|+..|.
T Consensus 114 v~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~ 160 (248)
T 4e29_A 114 VNQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALR 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556678888999999999999999999999999999999998664
No 6
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=18.47 E-value=2.1e+02 Score=24.48 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=25.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh------HHHHHHHHHHHHHh
Q 013648 234 YSKLEEKIHAKEVEKSTLQAKS------KETQEAEIKMLRKS 269 (439)
Q Consensus 234 y~KLEEK~~AkEaEK~qlQAKs------KEEeEaEIKqLRKS 269 (439)
|..||.++.-.|.|..+++... -++-+++|.+||.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 6678888888877777776643 36677788888753
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=17.47 E-value=3.4e+02 Score=21.63 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013648 228 EKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRK 268 (439)
Q Consensus 228 eKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRK 268 (439)
++|+.=..-++++...++.|...|+++-. .-+.|+..||.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~-~L~~E~~~Lr~ 71 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVE-QLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34455556777777778888887777643 33456788886
No 8
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=16.31 E-value=2.6e+02 Score=21.78 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 013648 222 RCDERAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKSL 270 (439)
Q Consensus 222 rsDERAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKSL 270 (439)
|++++-.|=|+.--.|..|++-.|..- -++|.||-+|++=|
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c--------~e~eQEieRL~~LL 48 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSC--------SEKEQEIERLNKLL 48 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 344444444444444444444333222 23444566666533
No 9
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=15.34 E-value=3.5e+02 Score=19.85 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 013648 228 EKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRKS 269 (439)
Q Consensus 228 eKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRKS 269 (439)
.+++++...|+.+...++.+...|+..-. .=..++.+|+.-
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~-~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVT-LLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 56778888999999999999988887632 222346666653
No 10
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=13.63 E-value=3.5e+02 Score=22.99 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013648 226 RAEKRREFYSKLEEKIHAKEVEKSTLQAKSKETQEAEIKMLRK 268 (439)
Q Consensus 226 RAeKRKEFy~KLEEK~~AkEaEK~qlQAKsKEEeEaEIKqLRK 268 (439)
.||+|.. ++......+|.+.-..-|++.++||.+.|.
T Consensus 17 ~AEk~A~------~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~ 53 (119)
T 4efa_G 17 QAEKEAH------EIVSKARKYRQDKLKQAKTDAAKEIDSYKI 53 (119)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566543 333334455555555667788888887775
Done!