BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013649
         (439 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
           Reductase, C- Terminal 3-Residue Truncation
          Length = 488

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 204 CLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFD 263
            L   G+L  IG+ +   MR   LR  +  ++ ++ +  + +  ++LKG +  H   L  
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL-- 254

Query: 264 VVNQYRAIFADDTSGSEEN 282
             NQ +  + D  SG E+ 
Sbjct: 255 PTNQLQVTWEDHASGKEDT 273


>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
 pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
          Length = 517

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 205 LRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDV 264
           L   G+L  IG+ +   MR   LR  +  ++ ++ +  + +  ++LKG +  H   L   
Sbjct: 224 LECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL--P 281

Query: 265 VNQYRAIFADDTSGSEEN 282
            NQ +  + D  SG E+ 
Sbjct: 282 TNQLQVTWEDHASGKEDT 299


>pdb|1P33|A Chain A, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|B Chain B, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|C Chain C, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|D Chain D, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
          Length = 289

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 377 PAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHDCRQFQ 436
           P +GY  +++ +E+ E +T  S  +E   L + +NGVS  ++ L    P S++ D R+  
Sbjct: 188 PLLGYTMYTMAKEALEGLTR-SAALELASLQIRVNGVSPGLSVLPDDMPFSVQEDYRRKV 246

Query: 437 ILY 439
            LY
Sbjct: 247 PLY 249


>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
           Protein P14 Bound To Region Of Sf3b155
 pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
           Protein P14 Bound To Region Of Sf3b155
          Length = 125

 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 196 RSNIQLPECLRIIGYLRRI----------GVFSEY----EMRLQFLRCREAWLTGILEDL 241
           R+NI+LP  +  I Y+R +           +F +Y    ++R+            + ED+
Sbjct: 8   RANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDI 67

Query: 242 -DQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEE 281
            D KNA ++L G   C+R  +    N  RA    DT   EE
Sbjct: 68  FDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEE 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,179,890
Number of Sequences: 62578
Number of extensions: 419487
Number of successful extensions: 827
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 6
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)