Query 013653
Match_columns 439
No_of_seqs 131 out of 1482
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 8.7E-58 1.9E-62 457.5 30.2 423 4-436 15-444 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 5.3E-54 1.2E-58 446.7 42.4 384 32-438 17-408 (559)
3 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.7E-51 5.8E-56 426.7 39.4 381 38-438 11-400 (525)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 1E-49 2.3E-54 404.0 39.0 387 27-438 9-398 (429)
5 KOG1966 Sodium/hydrogen exchan 100.0 5E-49 1.1E-53 391.9 11.5 381 35-438 53-440 (670)
6 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 9.4E-44 2E-48 372.1 38.7 392 25-438 14-432 (810)
7 PRK05326 potassium/proton anti 100.0 1.4E-43 3E-48 373.4 34.2 373 26-438 8-383 (562)
8 COG3263 NhaP-type Na+/H+ and K 100.0 8.4E-42 1.8E-46 328.4 27.8 370 24-438 6-381 (574)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.1E-35 2.4E-40 300.0 -1.0 366 35-438 7-374 (380)
10 KOG4505 Na+/H+ antiporter [Ino 100.0 2.5E-31 5.5E-36 248.0 23.8 378 38-438 27-427 (467)
11 PRK03562 glutathione-regulated 100.0 6E-27 1.3E-31 248.6 34.0 339 23-404 4-347 (621)
12 PLN03159 cation/H(+) antiporte 100.0 7.1E-27 1.5E-31 254.4 35.2 350 29-404 48-403 (832)
13 COG0475 KefB Kef-type K+ trans 100.0 2E-26 4.3E-31 232.2 33.8 340 25-403 7-351 (397)
14 TIGR00932 2a37 transporter, mo 100.0 4.8E-27 1E-31 226.5 26.8 268 35-325 3-272 (273)
15 PRK03659 glutathione-regulated 100.0 1E-25 2.2E-30 238.8 35.5 333 28-404 9-344 (601)
16 PRK10669 putative cation:proto 99.9 5.4E-25 1.2E-29 232.4 34.9 338 28-404 10-355 (558)
17 COG4651 RosB Kef-type K+ trans 99.7 1E-14 2.2E-19 135.6 26.3 364 22-428 4-378 (408)
18 KOG1650 Predicted K+/H+-antipo 99.6 2.7E-14 5.8E-19 154.2 17.2 346 33-403 31-387 (769)
19 PRK14853 nhaA pH-dependent sod 99.0 7.5E-08 1.6E-12 96.5 24.2 279 83-405 64-362 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.6 4.5E-06 9.8E-11 82.3 18.0 273 83-405 54-343 (373)
21 PF06965 Na_H_antiport_1: Na+/ 97.4 0.0013 2.8E-08 65.1 11.3 278 83-405 57-350 (378)
22 PRK09560 nhaA pH-dependent sod 97.3 0.015 3.3E-07 57.8 17.1 276 83-405 61-352 (389)
23 PRK14854 nhaA pH-dependent sod 97.2 0.012 2.6E-07 58.3 15.4 274 83-405 58-347 (383)
24 PRK09561 nhaA pH-dependent sod 97.2 0.016 3.4E-07 57.7 16.1 273 83-405 61-350 (388)
25 PRK14856 nhaA pH-dependent sod 97.1 0.02 4.4E-07 57.9 15.9 275 83-405 70-397 (438)
26 PRK14855 nhaA pH-dependent sod 97.1 0.023 5.1E-07 57.2 16.3 273 83-405 65-382 (423)
27 PF13593 DUF4137: SBF-like CPA 96.8 0.41 8.8E-06 47.1 21.7 151 79-239 26-184 (313)
28 COG3004 NhaA Na+/H+ antiporter 96.7 0.11 2.4E-06 50.1 16.0 272 87-405 68-353 (390)
29 COG0385 Predicted Na+-dependen 94.9 4 8.8E-05 39.9 19.7 152 85-243 39-191 (319)
30 PF01758 SBF: Sodium Bile acid 94.5 0.54 1.2E-05 42.5 11.4 109 88-204 2-113 (187)
31 COG2855 Predicted membrane pro 94.0 1.1 2.5E-05 43.8 12.8 149 35-198 22-174 (334)
32 PF06826 Asp-Al_Ex: Predicted 93.9 1 2.2E-05 40.0 11.3 98 47-156 21-121 (169)
33 COG2431 Predicted membrane pro 93.1 2.3 5E-05 40.3 12.7 88 52-156 109-201 (297)
34 PRK03659 glutathione-regulated 92.7 1.7 3.6E-05 46.8 13.0 70 85-161 266-335 (601)
35 PF03601 Cons_hypoth698: Conse 92.4 12 0.00025 36.7 25.1 113 47-170 24-139 (305)
36 PF05684 DUF819: Protein of un 92.4 14 0.00029 37.4 27.1 144 47-201 23-167 (378)
37 PRK03562 glutathione-regulated 92.0 2.4 5.2E-05 45.9 13.2 70 85-161 269-338 (621)
38 PF03956 DUF340: Membrane prot 91.9 0.9 2E-05 41.2 8.3 87 55-157 4-95 (191)
39 TIGR00841 bass bile acid trans 91.8 11 0.00023 36.5 16.4 135 90-236 14-157 (286)
40 COG0798 ACR3 Arsenite efflux p 91.5 15 0.00033 36.1 17.8 146 85-243 52-202 (342)
41 COG0475 KefB Kef-type K+ trans 91.3 3.6 7.7E-05 41.9 13.0 107 40-160 235-342 (397)
42 TIGR00808 malonate_madM malona 91.1 6 0.00013 35.9 12.3 104 25-134 17-129 (254)
43 PRK04972 putative transporter; 90.8 3.7 8E-05 43.8 12.9 150 9-172 364-527 (558)
44 PF05145 AmoA: Putative ammoni 90.5 8 0.00017 38.1 14.2 108 30-151 158-267 (318)
45 PRK10669 putative cation:proto 90.4 6.3 0.00014 42.0 14.3 72 85-163 277-348 (558)
46 PF03616 Glt_symporter: Sodium 90.1 23 0.00049 35.7 32.1 34 259-292 228-266 (368)
47 TIGR03082 Gneg_AbrB_dup membra 89.8 13 0.00028 32.5 14.1 106 34-154 5-112 (156)
48 TIGR03802 Asp_Ala_antiprt aspa 89.8 1.9 4E-05 46.0 9.6 128 26-172 12-144 (562)
49 TIGR00832 acr3 arsenical-resis 88.8 26 0.00056 34.7 20.6 140 88-235 47-197 (328)
50 PLN03159 cation/H(+) antiporte 88.6 4.7 0.0001 45.1 12.1 72 85-163 323-396 (832)
51 COG0786 GltS Na+/glutamate sym 87.8 33 0.00071 34.6 26.1 76 38-121 19-103 (404)
52 PF03616 Glt_symporter: Sodium 87.7 21 0.00046 35.9 15.1 100 25-127 222-322 (368)
53 PF05982 DUF897: Domain of unk 87.7 6.3 0.00014 38.6 10.7 110 51-171 178-289 (327)
54 PRK03818 putative transporter; 87.5 5.2 0.00011 42.6 11.1 103 25-136 7-115 (552)
55 PRK04972 putative transporter; 86.5 6.8 0.00015 41.8 11.3 124 30-172 18-146 (558)
56 TIGR00210 gltS sodium--glutama 86.0 38 0.00083 34.5 15.9 119 47-174 243-367 (398)
57 TIGR03802 Asp_Ala_antiprt aspa 84.6 21 0.00046 38.1 13.9 105 52-169 418-529 (562)
58 PF03812 KdgT: 2-keto-3-deoxyg 83.0 28 0.00061 33.9 12.6 128 44-174 5-136 (314)
59 PRK03818 putative transporter; 78.8 22 0.00047 38.0 11.4 104 52-168 403-514 (552)
60 COG3180 AbrB Putative ammonia 78.3 40 0.00087 33.5 12.2 109 29-151 190-300 (352)
61 COG1346 LrgB Putative effector 77.4 60 0.0013 30.2 12.3 33 95-127 75-107 (230)
62 TIGR00698 conserved hypothetic 74.7 53 0.0011 32.6 12.1 36 254-289 7-47 (335)
63 PF03390 2HCT: 2-hydroxycarbox 73.8 66 0.0014 32.8 12.6 134 17-158 239-373 (414)
64 KOG3826 Na+/H+ antiporter [Ino 73.3 5.8 0.00013 36.8 4.6 79 85-169 159-237 (252)
65 COG2855 Predicted membrane pro 71.7 61 0.0013 32.0 11.5 113 268-404 32-144 (334)
66 PRK04125 murein hydrolase regu 71.3 66 0.0014 27.6 11.3 107 27-136 10-117 (141)
67 PRK12460 2-keto-3-deoxyglucona 70.4 22 0.00049 34.7 8.2 58 89-153 197-254 (312)
68 TIGR00659 conserved hypothetic 67.9 1.1E+02 0.0023 28.6 13.3 27 99-125 76-102 (226)
69 COG2985 Predicted permease [Ge 66.0 52 0.0011 34.1 9.9 84 84-174 59-147 (544)
70 PF03601 Cons_hypoth698: Conse 64.6 1E+02 0.0022 30.1 11.7 126 255-404 4-135 (305)
71 TIGR00698 conserved hypothetic 63.7 1.6E+02 0.0035 29.2 30.5 78 83-170 65-145 (335)
72 TIGR01625 YidE_YbjL_dupl AspT/ 63.4 95 0.0021 27.1 10.0 107 52-168 24-135 (154)
73 PRK05326 potassium/proton anti 60.9 61 0.0013 34.6 10.2 29 85-113 275-303 (562)
74 PF04172 LrgB: LrgB-like famil 59.8 1.3E+02 0.0028 27.9 10.7 28 101-128 68-95 (215)
75 COG3493 CitS Na+/citrate sympo 59.0 1.9E+02 0.0042 29.1 12.1 136 18-160 258-407 (438)
76 TIGR00783 ccs citrate carrier 58.6 2E+02 0.0042 28.8 12.3 108 37-153 192-302 (347)
77 PRK12460 2-keto-3-deoxyglucona 58.0 1.6E+02 0.0035 28.8 11.5 140 47-195 8-151 (312)
78 PRK01658 holin-like protein; V 56.1 1.2E+02 0.0026 25.3 11.4 104 30-136 10-114 (122)
79 TIGR00400 mgtE Mg2+ transporte 55.8 1.5E+02 0.0032 30.7 11.7 23 47-69 283-305 (449)
80 TIGR00946 2a69 he Auxin Efflux 55.6 95 0.0021 30.3 9.9 121 37-171 170-290 (321)
81 TIGR00844 c_cpa1 na(+)/h(+) an 54.5 1.9E+02 0.0041 32.3 12.5 73 256-328 21-93 (810)
82 PRK10711 hypothetical protein; 53.9 1.7E+02 0.0038 27.3 10.5 88 35-124 14-102 (231)
83 PRK01821 hypothetical protein; 51.1 1.5E+02 0.0033 25.1 11.3 103 30-135 15-118 (133)
84 PF03818 MadM: Malonate/sodium 50.0 83 0.0018 22.6 5.9 41 25-66 16-56 (60)
85 COG0786 GltS Na+/glutamate sym 48.1 3.1E+02 0.0068 27.8 14.6 148 37-194 235-392 (404)
86 TIGR00932 2a37 transporter, mo 47.2 2.5E+02 0.0055 26.5 12.7 61 262-328 5-65 (273)
87 KOG2718 Na+-bile acid cotransp 45.5 79 0.0017 31.8 7.3 109 88-201 117-225 (371)
88 COG3329 Predicted permease [Ge 44.0 95 0.0021 30.2 7.2 148 41-196 209-363 (372)
89 COG2985 Predicted permease [Ge 37.3 2.1E+02 0.0045 29.9 8.9 136 20-171 361-510 (544)
90 COG0679 Predicted permeases [G 36.2 4.2E+02 0.009 25.8 25.0 110 273-403 167-277 (311)
91 TIGR00793 kdgT 2-keto-3-deoxyg 36.0 1.8E+02 0.0039 28.4 7.9 39 87-125 200-238 (314)
92 KOG1650 Predicted K+/H+-antipo 35.9 1.1E+02 0.0023 34.2 7.3 72 84-163 310-381 (769)
93 PF03812 KdgT: 2-keto-3-deoxyg 35.5 1.2E+02 0.0027 29.6 6.8 39 87-125 200-238 (314)
94 PF00999 Na_H_Exchanger: Sodiu 33.8 22 0.00047 35.6 1.5 101 47-161 232-336 (380)
95 COG0679 Predicted permeases [G 31.9 4.9E+02 0.011 25.3 11.2 63 56-119 170-232 (311)
96 PF06912 DUF1275: Protein of u 31.0 3E+02 0.0065 24.8 8.5 26 179-204 6-32 (209)
97 PF09946 DUF2178: Predicted me 28.5 3.3E+02 0.0071 22.3 9.0 13 278-290 32-44 (111)
98 PRK04288 antiholin-like protei 26.7 5.4E+02 0.012 24.1 24.3 28 99-126 82-109 (232)
99 PF15179 Myc_target_1: Myc tar 24.2 1.5E+02 0.0032 26.5 4.7 28 217-244 20-47 (197)
100 PF03788 LrgA: LrgA family; I 22.3 4E+02 0.0087 21.1 7.5 44 86-129 49-92 (96)
101 TIGR00793 kdgT 2-keto-3-deoxyg 21.8 6.3E+02 0.014 24.8 8.8 98 90-190 51-151 (314)
102 PF08372 PRT_C: Plant phosphor 20.3 1.8E+02 0.0038 25.5 4.4 31 2-32 75-105 (156)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-58 Score=457.48 Aligned_cols=423 Identities=50% Similarity=0.793 Sum_probs=376.0
Q ss_pred ccchhHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHHHHhhcCCCCc---ccc
Q 013653 4 ELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTNGTSS---HVL 78 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~--~iP~~~~~il~Gil~G~~~~~~~~~~~~---~~~ 78 (439)
|++.-.|..++-.++||++.++++.++++++.+++.+|+++++| ++|+.+..+++|+++|.+.++.+.+.++ ...
T Consensus 15 ~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~ 94 (575)
T KOG1965|consen 15 EIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRIL 94 (575)
T ss_pred hhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeE
Confidence 34455566656668899999999999999999999999999755 8999999999999999999988887776 667
Q ss_pred ccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhccc
Q 013653 79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA 158 (439)
Q Consensus 79 ~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~ 158 (439)
.++|+.++.+.+|+++|++|++++.+.++||..++...+++|+.+++..++...|++.......+++|.+|+.+|+++||
T Consensus 95 ~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSA 174 (575)
T KOG1965|consen 95 VFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISA 174 (575)
T ss_pred EecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcc
Confidence 89999999999999999999999999999999999999999999999999999888844333348999999999999999
Q ss_pred ccHHHHHHHhcccCC-CcchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 159 TDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSA 237 (439)
Q Consensus 159 Tdp~~v~~il~~~~~-~~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~ 237 (439)
|||+++++++||.+. |+++.+++|||++||++++++++.+.....++.+.....+.+..++..++++..+|+..|.+.+
T Consensus 175 TDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA 254 (575)
T KOG1965|consen 175 TDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISA 254 (575)
T ss_pred cCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 5899999999999999999999999998777655555557899999999999999999999999
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHH
Q 013653 238 FIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFI 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 317 (439)
+++|+.+.+ +.+..|..+.+.++|.+|++||.+|+||+++++.||++++++.++|.++++|...+|+|+.+++++|+++
T Consensus 255 ~~lK~~~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfI 333 (575)
T KOG1965|consen 255 LVLKFLYLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFI 333 (575)
T ss_pred HHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999765 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccC-CCCCChhhhhhhhccCCCccHH
Q 013653 318 FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSS-HEKIGLKQQLTIWWAGLMRGAV 396 (439)
Q Consensus 318 Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~glpRG~v 396 (439)
|.|+|+...+.++|.+. ...+.....++++++|++-+++++.+.|..||.+ .++++.|++..++|+|..||++
T Consensus 334 F~Y~Gl~~f~~~k~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAv 407 (575)
T KOG1965|consen 334 FIYLGLSAFDFQKHVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAV 407 (575)
T ss_pred HHHHhHHHhcccceeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHH
Confidence 99999998888877653 2345566678899999999999999999988755 5669999999999999449999
Q ss_pred HHHhhhccccccCCcCCchhhHHHHHhhhhhhhccccccc
Q 013653 397 SMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVSHH 436 (439)
Q Consensus 397 ~l~lA~~~~~~~~~~~~~~~~~i~~~~~~vVl~s~~v~g~ 436 (439)
++|+|.....+ .+...++++.+++..+|++|+++.|-
T Consensus 408 s~ALa~~~~~~---~~~~~~q~i~tttl~vVlfT~lv~Gg 444 (575)
T KOG1965|consen 408 SFALALGDFTD---SPHTGGQTIFTTTLVVVLFTVLVFGG 444 (575)
T ss_pred HHHHHhhhccc---cccccccEEEEeeeeeeeeeeeeeCC
Confidence 99999864221 11125688999999999999999884
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=5.3e-54 Score=446.72 Aligned_cols=384 Identities=31% Similarity=0.511 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhH
Q 013653 32 LLCACIVIGHLLEEN-RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF 110 (439)
Q Consensus 32 ll~~~~~~~~~~~~~-~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~ 110 (439)
+...+++.-++.+|+ +++|+++.++++|+++|+.....+.. +...++|++++.++||+|+|++|+++|++.+|+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~---~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~ 93 (559)
T TIGR00840 17 LASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI---DPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENL 93 (559)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC---ccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334445445556553 47999999999999999876544322 22567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCHHHHHHHhhhcccccHHHHHHHhcccCCC-cchheeeehhhhh
Q 013653 111 MTIMLFGAVGTLISFVIISAGAVHFFKQMN--IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVN 187 (439)
Q Consensus 111 ~~~~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~alllGails~Tdp~~v~~il~~~~~~-~l~~~l~ges~~n 187 (439)
++++.+|++|++++++++|..+|++.+..+ ..+++|..|+++||+++||||+++.+++++.+.| |+.++++|||++|
T Consensus 94 ~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~gESllN 173 (559)
T TIGR00840 94 GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLN 173 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheehhhhhh
Confidence 999999999999999999999987654221 1267999999999999999999999999999977 8999999999999
Q ss_pred hHHHHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 013653 188 DATSVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLS 264 (439)
Q Consensus 188 D~~aiilf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (439)
|++|+++|..+.++... +.+..+.......++...++|+++|+++|++..+++|+.. ..+..+..+++.++|++
T Consensus 174 DavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~l~~~yl~ 250 (559)
T TIGR00840 174 DAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFVFLISYLS 250 (559)
T ss_pred ccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHH
Confidence 99999999998887542 2233344455566777788899999999999999998773 33456788899999999
Q ss_pred HHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhh-hhhhhccCCCCchHH
Q 013653 265 YMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI-EKWRVVRDSPGKSVG 343 (439)
Q Consensus 265 ~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~-~~~~~~~~~~~~~~~ 343 (439)
|.+||.+|.||++|+++||++++++.++|.+++.++..+++|+.+++++|+++|+++|.++... ..|+ +.
T Consensus 251 Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~---------~~ 321 (559)
T TIGR00840 251 YLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWN---------WA 321 (559)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH---------HH
Confidence 9999999999999999999999998888888888888999999999999999999999987443 2222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCcCCchhhHHHHHh
Q 013653 344 VSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITST 423 (439)
Q Consensus 344 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~~~~~~~~i~~~~ 423 (439)
+.++.+++++++|++++++.++..|+.+ ..+.+|||+.+++|+| |||++++++|+... +...+.++.++.++
T Consensus 322 ~i~~~l~~~ll~R~l~V~~~~~~~~~~~---~~~~~~~e~~il~w~G-lRGaVa~aLAl~l~----~~~~~~~~~i~~~t 393 (559)
T TIGR00840 322 FVVATLSFCVIYRVLGVRTLSWITNEFR---PVEIPYKDQLVIFYAG-LRGAVAFALALLLD----EKIFPYKFLFVTTT 393 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCChhhhhheeeec-cccHHHHHHHHhCC----CCCcchHHHHHHHH
Confidence 4455567788999999999988887653 5689999999999999 69999999998752 24568999999999
Q ss_pred hhhhhhccccccccc
Q 013653 424 ITVVLFSTVVSHHHI 438 (439)
Q Consensus 424 ~~vVl~s~~v~g~~i 438 (439)
+.+|++|+++||.|+
T Consensus 394 ~~VVl~TvlvqG~T~ 408 (559)
T TIGR00840 394 LVVVFFTVIFQGGTI 408 (559)
T ss_pred HeeehHHHHHHHhhH
Confidence 999999999999885
No 3
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=2.7e-51 Score=426.70 Aligned_cols=381 Identities=20% Similarity=0.353 Sum_probs=307.3
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHH
Q 013653 38 VIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFG 117 (439)
Q Consensus 38 ~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la 117 (439)
..+....||.++|+++++++.|+++|+... . +..+++|+.+..+++|+++|++|+++|++++||+++++..++
T Consensus 11 ~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~-----~--~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la 83 (525)
T TIGR00831 11 TAVAVTVKFIRLPYPIALILAGLLLGLAGL-----L--PEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIA 83 (525)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhccc-----c--CCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344555566789999999999999997422 1 124568888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCCC-cchheeeehhhhhhHHHHHHHH
Q 013653 118 AVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVNDATSVVLFN 196 (439)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~~-~l~~~l~ges~~nD~~aiilf~ 196 (439)
++++++++..+++..+++. ++||..|+++|++++||||+++.+++|+.+.| |+.++++|||++||++++++|.
T Consensus 84 ~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf~ 157 (525)
T TIGR00831 84 FLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFA 157 (525)
T ss_pred HHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHHH
Confidence 9999999999998888754 89999999999999999999999999999988 8999999999999999999999
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhh
Q 013653 197 AIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGI 276 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgi 276 (439)
+..++..++. ..+..+....+++...+|+++|+++|+...++.++. .+++..+..++++++|++|++||.+|.||+
T Consensus 158 ~~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~Sgi 233 (525)
T TIGR00831 158 IAVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHFSGV 233 (525)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9887765321 123344567788889999999999999888877653 244556788899999999999999999999
Q ss_pred HHHHHHHHHhhccccc-cCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhh--hhhhccCCC-CchH---HHHHHHH
Q 013653 277 LTVFFCGIVMSHYTWH-NVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE--KWRVVRDSP-GKSV---GVSAILL 349 (439)
Q Consensus 277 la~~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~--~~~~~~~~~-~~~~---~~~~~~~ 349 (439)
+|++++|++++|+.++ +.+++.++..+++|+.+++++|+++|+++|++++... .|+...... ...+ ....+++
T Consensus 234 lAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (525)
T TIGR00831 234 IAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIY 313 (525)
T ss_pred HHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999998765 5667778889999999999999999999999986532 222110000 0011 1133444
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccc-cCCcCCchhhHHHHHhhhhhh
Q 013653 350 GLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTS-SGHTKLHGNAIMITSTITVVL 428 (439)
Q Consensus 350 ~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~-~~~~~~~~~~~i~~~~~~vVl 428 (439)
......|+++++. +..++..++.+.+++|||+.+++|+| |||++++++|+..+.. .++.++|+++.++..++.+|+
T Consensus 314 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G-~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl 390 (525)
T TIGR00831 314 PVMTYVRFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAG-LRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVIL 390 (525)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhcccCCCChhhHHHheecc-chHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHH
Confidence 5556778766543 23333334445678999999999999 6999999999887632 345678999999999999999
Q ss_pred hccccccccc
Q 013653 429 FSTVVSHHHI 438 (439)
Q Consensus 429 ~s~~v~g~~i 438 (439)
+|+++||.|.
T Consensus 391 ~TllvqG~tl 400 (525)
T TIGR00831 391 FSLLVQGISL 400 (525)
T ss_pred HHHHHHHhhH
Confidence 9999999874
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-49 Score=404.01 Aligned_cols=387 Identities=23% Similarity=0.324 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHH
Q 013653 27 NLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQF 106 (439)
Q Consensus 27 ~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l 106 (439)
+....++......+...+| .++|+.+.+++.|++.|+......+ +....++|.+..+++|+++|++|+|+|++++
T Consensus 9 ~~~~lil~l~~~~~~~~~~-l~~~~i~~~ll~g~i~g~~~l~~~~----~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l 83 (429)
T COG0025 9 FLLLLILLLGLLVSVLAGR-LLLPEIPLLLLLGLLGGPPGLNLIS----PDLELDPELFLVLFLAILLFAGGLELDLREL 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhhhhhcccc----ccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 3334444455555666655 5599999999999999965432222 1245678889999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCCC-cchheeeehhh
Q 013653 107 FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGV 185 (439)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~~-~l~~~l~ges~ 185 (439)
||+++++..+++++++++++..++..|+++| ++|+..|+++|++++||||+++.+++++.+.| |+.++++|||+
T Consensus 84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gESl 158 (429)
T COG0025 84 RRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESL 158 (429)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999974 89999999999999999999999999999988 89999999999
Q ss_pred hhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHH
Q 013653 186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREVALMILMAYLS 264 (439)
Q Consensus 186 ~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 264 (439)
+||+.++++|.+..+...++... +.......+++...+|+.+|++.|+...++.++...++. ++..+..+++..++.+
T Consensus 159 ~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 159 LNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred hhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 99999999999998876543221 244567889999999999999999999999999964321 3456788899999999
Q ss_pred HHHHHhhhchhhHHHHHHHHHhhccccccCCc-hhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchHH
Q 013653 265 YMLAELFYLSGILTVFFCGIVMSHYTWHNVTE-SSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVG 343 (439)
Q Consensus 265 ~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~~ 343 (439)
|.+||.+|.||++|++++|+..++....+.++ +.+.+.+++||.+++++|.++|+++|.+++....+.. .+.
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-------~~~ 310 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-------GLL 310 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hHH
Confidence 99999999999999999999997433334433 4478889999999999999999999999966543221 245
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCcCCchhhHHHHHh
Q 013653 344 VSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITST 423 (439)
Q Consensus 344 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~~~~~~~~i~~~~ 423 (439)
..+++....+++|++++++..+..+ ++.++..+|||+.+++|+| |||++++++|...+...++ +.+|.+..++
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~---~~~~~~~~~~~~~~l~w~G-~RG~vsla~al~~p~~~~~---~~~~~i~~i~ 383 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSN---LKLRDPLPWRERLFLSWAG-PRGVVSLALALLIPLELPG---PARELILFIV 383 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---ccccCCCCHHHHHHHhhcc-cccHHHHHHHHHchhhccc---hhhhHHHHHH
Confidence 5677788999999999999887654 2334678999999999999 8999999999987543222 7799999999
Q ss_pred hhhhhhccccccccc
Q 013653 424 ITVVLFSTVVSHHHI 438 (439)
Q Consensus 424 ~~vVl~s~~v~g~~i 438 (439)
+.+|++|+++||.|+
T Consensus 384 ~~vIl~Sl~v~g~t~ 398 (429)
T COG0025 384 FLVILFSLLVQGLTL 398 (429)
T ss_pred HHHHHHHHHHHhhhH
Confidence 999999999999985
No 5
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-49 Score=391.93 Aligned_cols=381 Identities=29% Similarity=0.511 Sum_probs=327.4
Q ss_pred HHHHHHHHHhh-ccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHH
Q 013653 35 ACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTI 113 (439)
Q Consensus 35 ~~~~~~~~~~~-~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~ 113 (439)
.+.+.-|...+ ++.+|++..++++|+++|.+........+ ...+++.|+.+.||+|++++||.++-|.+.+|...+
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~---~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtI 129 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAP---FFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTI 129 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccc---ccccccchhhhhcCHHHhcccccCccHHHHhccchh
Confidence 44444555545 34599999999999999988775543322 345788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CCHHHHHHHhhhcccccHHHHHHHhcccCCC-cchheeeehhhhhhHH
Q 013653 114 MLFGAVGTLISFVIISAGAVHFFKQMNIGT--LKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVNDAT 190 (439)
Q Consensus 114 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~alllGails~Tdp~~v~~il~~~~~~-~l~~~l~ges~~nD~~ 190 (439)
+..|++|+++.++..|...|.+-+. +.-+ .++..-++||++.|+.||++|+++++|.+.. -+..++.|||++||++
T Consensus 130 LlfAVvGTi~Na~~~g~sL~~i~~~-glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFGESLlNDaV 208 (670)
T KOG1966|consen 130 LLFAVVGTIWNAFTIGASLYAISLS-GLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFGESLLNDAV 208 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeehhhhhcCce
Confidence 9999999999999999888776432 2223 5688899999999999999999999999977 5899999999999999
Q ss_pred HHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHH
Q 013653 191 SVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYML 267 (439)
Q Consensus 191 aiilf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 267 (439)
.+++|..+.+...- +..+.+......+|+...+||+++|+++|++.+...|.. ++.+..++.+.+.++|++|..
T Consensus 209 TVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfif~~pYlaYL~ 285 (670)
T KOG1966|consen 209 TVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFIFLLPYLAYLT 285 (670)
T ss_pred EEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhhhhHHHHHHHH
Confidence 99999988876542 333444445566777788999999999999999999866 466778999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchHHHHHH
Q 013653 268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAI 347 (439)
Q Consensus 268 ae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (439)
||.+|+||++|..+||+.+++|...|.+++.....+.+..+++...++++|+++|....+. +|.+ ++.+..+
T Consensus 286 aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h~w-------d~~Fi~~ 357 (670)
T KOG1966|consen 286 AEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NHHW-------DFAFICL 357 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-ccee-------ehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998654 2322 2345677
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCcCCchhhHHHHHhhhhh
Q 013653 348 LLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVV 427 (439)
Q Consensus 348 ~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~~~~~~~~i~~~~~~vV 427 (439)
.++.+.+.|++++...+++.|+.| ..+++.++|.+|++||+ ||+++.+|.... ++...|.+++++.+|+.||
T Consensus 358 T~~fc~~~R~lgv~~lt~~~N~fr---~~k~~~~DQfimsyGGL-RGAiaF~LV~li----d~~~vp~K~~Fvttti~VI 429 (670)
T KOG1966|consen 358 TLVFCLIYRAIGVVVLTWFLNKFR---MVKLEFVDQFIMSYGGL-RGAIAFGLVVLI----DGAKVPAKNMFVTTTIAVI 429 (670)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhh---eeeccccceeeeecCCc-chhhheeEEEEe----ccccCCcccceEeeeeEEE
Confidence 788999999999999999999775 56899999999999998 999999998875 3467899999999999999
Q ss_pred hhccccccccc
Q 013653 428 LFSTVVSHHHI 438 (439)
Q Consensus 428 l~s~~v~g~~i 438 (439)
+||+++||.||
T Consensus 430 fFTVflQGiTI 440 (670)
T KOG1966|consen 430 FFTVFLQGITI 440 (670)
T ss_pred eeeeeecccch
Confidence 99999999998
No 6
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=9.4e-44 Score=372.15 Aligned_cols=392 Identities=16% Similarity=0.150 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhH---HHHHhhHHHhhhhhhcC
Q 013653 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL---FFIYLLPPIIFNAGFQV 101 (439)
Q Consensus 25 ~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~---~~~i~L~~ilF~~g~~~ 101 (439)
....++.++++..+++.+++++.++|+++.++++|+++||......+. .. ...+... +.++.+++++|.+|+++
T Consensus 14 ~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP--~~-~g~~d~i~leIteIvL~I~LFa~Gl~L 90 (810)
T TIGR00844 14 AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNP--LS-WGNTDSITLEISRILLCLQVFAVSVEL 90 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCCh--hh-cccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666666678899987789999999999999999975432211 10 1101111 67899999999999999
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcc---cCCC-cch
Q 013653 102 KKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQ---DETP-LLY 177 (439)
Q Consensus 102 ~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~---~~~~-~l~ 177 (439)
|++++|++|+.+..++++++.++++++++++|++++ +++|..|+++||+++||||+.+.++++. .+.| |++
T Consensus 91 ~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR 165 (810)
T TIGR00844 91 PRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLR 165 (810)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHH
Confidence 999999999999999999999999999999888853 8999999999999999999999999983 3566 799
Q ss_pred heeeehhhhhhHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcchH
Q 013653 178 SLVFGEGVVNDATSVVLFNAIQSFDLSH--INLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREV 254 (439)
Q Consensus 178 ~~l~ges~~nD~~aiilf~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~-~~~~~~ 254 (439)
+++++||++||++|++++.+.+.+...+ ............+++.+++|+++|+++|++..++.++...++. ..+...
T Consensus 166 ~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfl 245 (810)
T TIGR00844 166 NLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFL 245 (810)
T ss_pred hHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 9999999999999999988776554321 1111111246788999999999999999999999998853222 233445
Q ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhc
Q 013653 255 ALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVV 334 (439)
Q Consensus 255 ~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~ 334 (439)
...+++++.+|..++.+|.||++|+|++|++++|..+. ..+.....+++.++.+++..+|+++|..++.....+ .
T Consensus 246 a~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~-~ 320 (810)
T TIGR00844 246 AFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNN-G 320 (810)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhccc-c
Confidence 56788899999999999999999999999999986532 112334669999999999999999999985432100 0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccC----C
Q 013653 335 RDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSG----H 410 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~----~ 410 (439)
+ ..+..|..+++.++++++.|+..++.+..+. +...+|||+++++|.| |||..++..+.....+.+ +
T Consensus 321 ~-l~~~~w~~ilLaL~LifVrRPpaVlll~~li-------~~~~s~rErlFigWFG-pRGIGSIyyl~~A~~~~~~~~~~ 391 (810)
T TIGR00844 321 D-IGLDVWRLIILSLVVIFLRRIPAVLILKPLI-------PDIKSWREAMFIGHFG-PIGVGAVFAAILSKSQLESHLTD 391 (810)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCCCHHHHHHheeec-cccHHHHHHHHHHHHhhhcccCc
Confidence 0 0112344455666777899988887643322 2467999999999999 899999987766533221 0
Q ss_pred cC-------------CchhhHHHHHhhhhhhhccccccccc
Q 013653 411 TK-------------LHGNAIMITSTITVVLFSTVVSHHHI 438 (439)
Q Consensus 411 ~~-------------~~~~~~i~~~~~~vVl~s~~v~g~~i 438 (439)
.+ ....+.+.++|.++|+.|+++||.|+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~ 432 (810)
T TIGR00844 392 EETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSV 432 (810)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccc
Confidence 00 01256799999999999999999986
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.4e-43 Score=373.37 Aligned_cols=373 Identities=21% Similarity=0.247 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHH
Q 013653 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (439)
Q Consensus 26 i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~ 105 (439)
++.+.++++.+.+.+.+.+| .++|..+++++.|+++||......+.... + ..+.+.++++++++|++|+|+|++.
T Consensus 8 ll~~~~ll~l~~~~~~l~~r-~~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~~~~ 82 (562)
T PRK05326 8 LLIGALLLLLSILASRLSSR-LGIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTRWSS 82 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCCHHH
Confidence 44455666666666666665 67999999999999999854322111100 1 1246889999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccC--CC-cchheeee
Q 013653 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TP-LLYSLVFG 182 (439)
Q Consensus 106 l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~--~~-~l~~~l~g 182 (439)
+|+++++++.+++.++++++.+++..+++++ +++|..|+++|+++++|||+++.+++++.+ .+ |+++++++
T Consensus 83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~ 156 (562)
T PRK05326 83 FRPALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEI 156 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhh
Confidence 9999999999999999999988888888777 899999999999999999999999999998 66 89999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 013653 183 EGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY 262 (439)
Q Consensus 183 es~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (439)
||++||+++++++....++..++.+..+ +..+..++..+.+++++|+++|+...++++|.+ .+.+.....+++++++
T Consensus 157 eS~~nD~~ai~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l 233 (562)
T PRK05326 157 ESGSNDPMAVFLTITLIELITGGETGLS-WGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGAL 233 (562)
T ss_pred hhhcccHHHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHH
Confidence 9999999999999988876644322212 223567788899999999999999999888763 1233456778899999
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchH
Q 013653 263 LSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSV 342 (439)
Q Consensus 263 ~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~ 342 (439)
++|++||.+|.||++|++++|++++|.. .+.++..+++++.+++++++++|+++|+.+++....+. .+
T Consensus 234 ~~~~~a~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-------~~ 301 (562)
T PRK05326 234 LIFALTAALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-------AL 301 (562)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HH
Confidence 9999999999999999999999999643 23345688899999999999999999999865432111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCcCCchhhHHHHH
Q 013653 343 GVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITS 422 (439)
Q Consensus 343 ~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~~~~~~~~i~~~ 422 (439)
...++.....+++|+++++.... ..+++|||+.+++|+| |||++++++|..... .+.+.++.+..+
T Consensus 302 ~~l~i~~~l~~vaR~l~v~l~~~---------~~~~~~~e~~~i~~~g-~RG~v~i~lA~~~~~----~~~~~~~~~~~~ 367 (562)
T PRK05326 302 PALLLALFLILVARPLAVFLSLL---------PFRFNLREKLFISWVG-LRGAVPIVLATFPMM----AGLPNAQLIFNV 367 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---------cCCCCHhhhheeeeec-chhHHHHHHHHHHHH----cCCCchhhhhhh
Confidence 22223345677999999887542 3488999999999999 799999999986532 344667788899
Q ss_pred hhhhhhhccccccccc
Q 013653 423 TITVVLFSTVVSHHHI 438 (439)
Q Consensus 423 ~~~vVl~s~~v~g~~i 438 (439)
++.+|++|+++||.|+
T Consensus 368 ~~~vvl~S~~i~g~tl 383 (562)
T PRK05326 368 VFFVVLVSLLLQGTTL 383 (562)
T ss_pred hheeeHHHHHHHHhhH
Confidence 9999999999999875
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-42 Score=328.35 Aligned_cols=370 Identities=21% Similarity=0.269 Sum_probs=308.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhhhhh
Q 013653 24 VSMNLFV-ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAG 98 (439)
Q Consensus 24 ~~i~~~~-~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~~g 98 (439)
..+++.. ++..+++..+.+..| ..+|-.+..+.+|++.|. ++... .++|+ ..+..++|..|+|++|
T Consensus 6 ~~ill~gsvlvivsif~s~~ssr-fGvP~LllFl~iGm~aG~------dGlg~--I~fdNy~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 6 NLILLLGSVLVIVSIFSSLISSR-FGVPLLLLFLSIGMLAGV------DGLGG--IEFDNYPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHcCC------Ccccc--cccCccHHHHHHHHHHHHHHhhcCc
Confidence 3444555 344444444444444 669999999999999983 33321 22222 3467889999999999
Q ss_pred hcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCCC-cch
Q 013653 99 FQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLY 177 (439)
Q Consensus 99 ~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~~-~l~ 177 (439)
++.+++.+|...++.+.++++|+++|..+.+..++|++ +.+|.+++++|+++++||.++|-+++++.+.+ |++
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~ 150 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVA 150 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhh
Confidence 99999999999999999999999999999999999998 99999999999999999999999999988876 999
Q ss_pred heeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Q 013653 178 SLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALM 257 (439)
Q Consensus 178 ~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
++++-||.-||..|+.+.-.++.+..++.++.++. .+..+++++..|.++|+..|++..+..+|.+ -++...+.+.
T Consensus 151 stLEiESGtNDPmAvfLTitlieli~~get~l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n---Ld~GL~pil~ 226 (574)
T COG3263 151 STLEIESGSNDPMAVFLTITLIELIAGGETNLSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN---LDSGLYPILA 226 (574)
T ss_pred hhEEeecCCCCceeeehhHHHHHHHhccccccCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---cccchhHHHH
Confidence 99999999999999999888888876653333333 3455899999999999999999999999883 3455668889
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC
Q 013653 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337 (439)
Q Consensus 258 l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~ 337 (439)
++...+.|.+++.+|.||++++++||+..+| .+-+.|+.+.+|.+-++++++..+|...|..+.+.+.|.+
T Consensus 227 la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN-----~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~i---- 297 (574)
T COG3263 227 LAGGLLIFSLTGAIGGSGILAVYLAGLLLGN-----RPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPI---- 297 (574)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHhCC-----CcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHh----
Confidence 9999999999999999999999999999995 4456788999999999999999999999999988877654
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCcCCchhh
Q 013653 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNA 417 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~~~~~~~ 417 (439)
.+...++.+..++++|++.|++... +.++++||+.+++|.|+ ||++++++|..+.. ...+..+
T Consensus 298 ---avPailL~l~mifvaRP~aV~l~l~---------Pfrf~~~Ek~fvSWvGL-RGAv~IilAifpm~----aglena~ 360 (574)
T COG3263 298 ---AIPAILLSLWMIFVARPLAVFLGLI---------PFRFNRREKLFVSWVGL-RGAVPIILAIFPMM----AGLENAR 360 (574)
T ss_pred ---hHHHHHHHHHHHHHHhHHHHHHhhc---------ccccCccchheeehhhc-ccchhhhHhhhHHh----cCCccce
Confidence 3444566678889999999987541 35799999999999998 99999999976532 2346677
Q ss_pred HHHHHhhhhhhhccccccccc
Q 013653 418 IMITSTITVVLFSTVVSHHHI 438 (439)
Q Consensus 418 ~i~~~~~~vVl~s~~v~g~~i 438 (439)
.+..++++||+.|+++||.|+
T Consensus 361 l~FNvAF~VVLvSlliQG~tl 381 (574)
T COG3263 361 LFFNVAFFVVLVSLLIQGSTL 381 (574)
T ss_pred EEeehhHHHHHHHHHHccCcc
Confidence 788999999999999999986
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.1e-35 Score=299.97 Aligned_cols=366 Identities=25% Similarity=0.322 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHH
Q 013653 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (439)
Q Consensus 35 ~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~ 114 (439)
.+.+.+.. .||.++|+.+++++.|+++|+......+.. +...+.+.++++++++|.+|+|+|.+++||++++..
T Consensus 7 ~~~~~~~l-~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~ 80 (380)
T PF00999_consen 7 LAFVAGIL-FRRLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRAL 80 (380)
T ss_dssp -----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----------
T ss_pred hHHHHHHH-HHHhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 34445555 455679999999999999999765422111 123456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhccc-CCC-cchheeeehhhhhhHHHH
Q 013653 115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD-ETP-LLYSLVFGEGVVNDATSV 192 (439)
Q Consensus 115 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~-~~~-~l~~~l~ges~~nD~~ai 192 (439)
..++.++.++...++...++.+ ...++++..++++|+++++|||+.+.++++|. +.+ +.++++.+|+.+||..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i 157 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAI 157 (380)
T ss_dssp ------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTT
T ss_pred ccccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchh
Confidence 9999999998888676666410 00189999999999999999999999999654 455 899999999999999999
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhh
Q 013653 193 VLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFY 272 (439)
Q Consensus 193 ilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg 272 (439)
+++.+..+..+.+ ...+.......++.....+.++|...+++..+..|+. +++++.+...++..++..|+++|.+|
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g 233 (380)
T PF00999_consen 158 ILLSILISLAQAS-GQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILG 233 (380)
T ss_dssp TTT-----------------------------------------------------------------------------
T ss_pred hhhhhhhhhhccc-ccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcccccccc
Confidence 9999888776221 2223334444555555555555555544444444332 24566778889999999999999999
Q ss_pred chhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHH
Q 013653 273 LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLV 352 (439)
Q Consensus 273 ~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (439)
.|+++|++++|+.+++...+ ++.+++.+++++ .++++++|+.+|++++.....+ ....+..........
T Consensus 234 ~s~~l~af~~Gl~~~~~~~~---~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~-----~~~~~~~~~~~~~~~ 302 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNSPFA---ERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN-----SPSVIILVLLLLIAI 302 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehcccccccc---chhhhcccchhh---HHHhhHHhhhhccccccccccc-----chhhhhhHHHHHHHH
Confidence 99999999999999953322 223334444544 7999999999999995322100 123444555666677
Q ss_pred HHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCcCCchhhHHHHHhhhhhhhccc
Q 013653 353 LLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTV 432 (439)
Q Consensus 353 ~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~~~~~~~~i~~~~~~vVl~s~~ 432 (439)
+++|+++++..++ ..+.++||+..++|++.|||.++++++....+. +....+. ..++..++++|.+
T Consensus 303 ~~~k~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~----~~~~~~~-~~~~~~~vl~t~i 368 (380)
T PF00999_consen 303 LLGKFIGVYLASR---------LFGIPWKEALFIGLGMLPRGEVSLALALIALNL----GIISEQM-FTIIIAAVLLTII 368 (380)
T ss_dssp -----------------------------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------
T ss_pred HHhhhceeehhhh---------hcccccchhHHHHHhhcCccHHHHHHHHHHHhc----CCCCHHH-HHHheeeeeeHHH
Confidence 7999999887653 348899999999999977999999999876432 2233344 8888899999999
Q ss_pred cccccc
Q 013653 433 VSHHHI 438 (439)
Q Consensus 433 v~g~~i 438 (439)
++|.++
T Consensus 369 i~~~~~ 374 (380)
T PF00999_consen 369 IAGIIL 374 (380)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 998763
No 10
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-31 Score=247.98 Aligned_cols=378 Identities=16% Similarity=0.175 Sum_probs=289.1
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCC-ccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHH
Q 013653 38 VIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTS-SHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLF 116 (439)
Q Consensus 38 ~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~-~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~l 116 (439)
+.+..++++..+.+.....+.|+++||......+... .+... -...+..+.|++-.|..+.|++..++.|+|++++.+
T Consensus 27 l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~-it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vl 105 (467)
T KOG4505|consen 27 LASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDY-ITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVL 105 (467)
T ss_pred HHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcch-hhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5688888888899999999999999998764433221 11111 123377899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccC----CC-cchheeeehhhhhhHHH
Q 013653 117 GAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE----TP-LLYSLVFGEGVVNDATS 191 (439)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~----~~-~l~~~l~ges~~nD~~a 191 (439)
-.+.+...++..+..+|.+.| ++++..++++++.+++|||+...++..+.+ .| |+++++..||..||++|
T Consensus 106 llpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMa 180 (467)
T KOG4505|consen 106 LLPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMA 180 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcc
Confidence 999999999998888998885 899999999999999999999999998653 66 79999999999999999
Q ss_pred HHHHHHHHHhhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHHHHH
Q 013653 192 VVLFNAIQSFDLSHI---NLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREVALMILMAYLSYML 267 (439)
Q Consensus 192 iilf~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l 267 (439)
+.++...+.+..... ...++ .....+++...|.++|.+.|++....+|+.+.+|- +++.....-+.+++++.++
T Consensus 181 ipflflai~Ll~h~~~r~~~rdw--v~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gi 258 (467)
T KOG4505|consen 181 IPFLFLAIDLLRHKPRRKAGRDW--VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGI 258 (467)
T ss_pred hhHHHHHHHHHhcCchhccCCce--ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhh
Confidence 999887776643211 11122 45567788999999999999999999998864332 3444456678889999999
Q ss_pred HHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhh-hhhccCCCCchHHHHH
Q 013653 268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEK-WRVVRDSPGKSVGVSA 346 (439)
Q Consensus 268 ae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (439)
.+.+|.+.++-.|++|..+++..+-..+ .+..+..+.+..+++..+|++.|..++..+. |...+ ...|....
T Consensus 259 gtiiGvddLl~sFfAGi~Fswd~wFsk~----t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g---l~vwrlvi 331 (467)
T KOG4505|consen 259 GTIIGVDDLLVSFFAGIVFSWDEWFSKK----TKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG---LPVWRLVI 331 (467)
T ss_pred hheechhHHHHHHHhhhhcchhHHhhhh----hhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC---chHHHHHH
Confidence 9999999999999999999987754322 1234466677779999999999999976642 22222 22344444
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCCc----CC--------c
Q 013653 347 ILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHT----KL--------H 414 (439)
Q Consensus 347 ~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~~----~~--------~ 414 (439)
..+..+++-|.-.++++.+.. ++-.+|||++|.|+.| |.|+.++..|+..-...+.+ .. .
T Consensus 332 lsi~iif~RRip~v~l~kp~i-------PdikswkEALFvGhFG-PIGVgAly~allar~~le~~ep~~~i~~~e~~~w~ 403 (467)
T KOG4505|consen 332 LSITIIFIRRIPAVYLMKPLI-------PDIKSWKEALFVGHFG-PIGVGALYYALLARKELETLEPEKSIYESETVFWT 403 (467)
T ss_pred HHHHHHHhcccceEEEeccCC-------cchhhHHHHHHhccCC-CccHHHHHHHHHHHhhhccCCcccccCCccccchh
Confidence 555556666666666644332 3567999999999999 99999998887642111111 01 1
Q ss_pred hhhHHHHHhhhhhhhccccccccc
Q 013653 415 GNAIMITSTITVVLFSTVVSHHHI 438 (439)
Q Consensus 415 ~~~~i~~~~~~vVl~s~~v~g~~i 438 (439)
..+.+.+.+..+|+.|+++||+|+
T Consensus 404 li~~iwpivsf~vlsSIiVHG~sv 427 (467)
T KOG4505|consen 404 LIEIIWPIVSFTVLSSIIVHGSSV 427 (467)
T ss_pred hhhhhhhhhHHHHHHHHHhccchh
Confidence 245588899999999999999986
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.96 E-value=6e-27 Score=248.60 Aligned_cols=339 Identities=16% Similarity=0.078 Sum_probs=243.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCC
Q 013653 23 VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK 102 (439)
Q Consensus 23 ~~~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~ 102 (439)
+..+..+.+++..+.+.+.+++| .++|.++++++.|+++||......+. . . .-+.+.++++.+++|..|+|+|
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~r-l~lp~vlgyilaGillGP~~lg~i~~--~--~--~i~~laelGvv~LlF~iGLEl~ 76 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVR-LGLGSVLGYLIAGCIIGPWGLRLVTD--V--E--SILHFAEFGVVLMLFVIGLELD 76 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhCcccccCCCC--H--H--HHHHHHHHHHHHHHHHHHhCcC
Confidence 33455556666677766777765 67999999999999999854433211 0 0 1235789999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCC-C-cchhee
Q 013653 103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLV 180 (439)
Q Consensus 103 ~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~-~-~l~~~l 180 (439)
++.+|+.+++++..+...+.+++.+.+...++ + +++|..++++|.+++.|+++.+.++++|.+. + +.++..
T Consensus 77 ~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~-~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~ 149 (621)
T PRK03562 77 PQRLWKLRRSIFGGGALQMVACGGLLGLFCML-L------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSA 149 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 99999999999999999988887766554443 3 8999999999999999999999999999883 4 789999
Q ss_pred eehhhhhhHHHHHHHHHHHHhhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCcchHHHH
Q 013653 181 FGEGVVNDATSVVLFNAIQSFDLSHIN--LSIALKFVGSFFYLFIASTMLGVIAGL-LSAFIIKKLYMGRHSTDREVALM 257 (439)
Q Consensus 181 ~ges~~nD~~aiilf~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~iG~~~G~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
.+..++||..+++++.++..+...+.+ ....+... ....+.++..++.|. +..++.++..+ .+.++.....+
T Consensus 150 l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~ 224 (621)
T PRK03562 150 FAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSA----LKVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVA 224 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHH
Confidence 999999999999988876544332111 11111111 112222333333343 44455555532 23455556667
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC
Q 013653 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337 (439)
Q Consensus 258 l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~ 337 (439)
+.+++.+.+++|.+|+|..+|+|++|+.+++. +.++..++..+....++.++||+.+|+.++.....
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~------ 291 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLL------ 291 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH------
Confidence 78889999999999999999999999999942 23445555555566788899999999998442211
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhcc
Q 013653 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
+.++..+..++..+++|+++++..++. .+.++|++..+|+..-+||..+++++...
T Consensus 292 --~~~~~il~~~~~~~~~K~~~~~~~~~~---------~g~~~~~a~~~gl~L~~~Gef~~vl~~~a 347 (621)
T PRK03562 292 --ENPLRILILLLGFLAIKIAMLWLLARP---------LGVPRKQRRWFAVLLGQGGEFAFVVFGAA 347 (621)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCHhHHHHHHHHHhccccHHHHHHHHH
Confidence 122223344556789999998876643 37899999999997767999999887653
No 12
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.96 E-value=7.1e-27 Score=254.38 Aligned_cols=350 Identities=12% Similarity=0.108 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCcccccc----ChhHHHHHhhHHHhhhhhhcCChH
Q 013653 29 FVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMF----SEDLFFIYLLPPIIFNAGFQVKKK 104 (439)
Q Consensus 29 ~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~----~~~~~~~i~L~~ilF~~g~~~~~~ 104 (439)
+.++++++.+++.+++| .++|.++++++.|+++||......+......++. .-+.+.++++.+++|..|+|+|.+
T Consensus 48 l~lil~~a~l~~~ll~r-l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~ 126 (832)
T PLN03159 48 LTLVVVTTRLLVFILKP-FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDIS 126 (832)
T ss_pred HHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 34555566666666655 6799999999999999997764432211111111 124588999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCC-C-cchheeee
Q 013653 105 QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVFG 182 (439)
Q Consensus 105 ~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~-~-~l~~~l~g 182 (439)
.+||+.++.+..+..+++++..+.....+++ ............++++|.+++.|+..++.++++|.+. + +.+++..+
T Consensus 127 ~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLs 205 (832)
T PLN03159 127 VIRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMS 205 (832)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHH
Confidence 9999999999999999988765544333333 2110001123457899999999999999999999983 4 79999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 013653 183 EGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY 262 (439)
Q Consensus 183 es~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (439)
.+.+||..+++++.+..++...+.+.... +...+..+...+++.++.-....|+.++....++.++....+++.+++
T Consensus 206 aavv~Dl~~~ilLav~~~l~~~~~~~~~~---l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl 282 (832)
T PLN03159 206 AALVNDMCAWILLALAIALAENDSTSLAS---LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVM 282 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHH
Confidence 99999999999998887665433221111 111111111122222222334444444432111223445566777788
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchH
Q 013653 263 LSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSV 342 (439)
Q Consensus 263 ~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~ 342 (439)
++.+++|.+|+|.++|+|++|+++.+. +..+...+++......++.++||+.+|++++.... .....+
T Consensus 283 ~~a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l------~~~~~~ 350 (832)
T PLN03159 283 ISGFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKI------QGPATW 350 (832)
T ss_pred HHHHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHh------cCchHH
Confidence 899999999999999999999999841 12222334444445678999999999999844211 122234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhcc
Q 013653 343 GVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 343 ~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
...++++++.+++|+++.+..++. .++++||+..+|...-+||.++++++...
T Consensus 351 ~~~~~liv~a~~gK~~g~~l~a~~---------~g~~~~eal~lG~lm~~kG~~~Lii~~ig 403 (832)
T PLN03159 351 GLLVLVIIMASAGKIMGTIIIAFF---------YTMPFREGITLGFLMNTKGLVEMIVLNVG 403 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444555677788999988776643 38999999999999999999999987664
No 13
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2e-26 Score=232.19 Aligned_cols=340 Identities=17% Similarity=0.177 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChH
Q 013653 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK 104 (439)
Q Consensus 25 ~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~ 104 (439)
.+..+.+++..+.+.+++++| .++|.++++++.|+++||........ + +..-+.+.++++.+++|.+|+|.|.+
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~r-l~lp~vlg~llaGiilGp~~~~~~~~-~----~~~i~~laelGvi~LlF~~GLE~~~~ 80 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKR-LGLPPVLGYLLAGIILGPWGLLLIIE-S----SEIIELLAELGVVFLLFLIGLEFDLE 80 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHhcCcccccccCC-c----hHHHHHHHHHhHHHHHHHHHHCcCHH
Confidence 445556667777777877766 66999999999999999822211111 0 00123478999999999999999999
Q ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccC-CC-cchheee
Q 013653 105 QFFRNFMT-IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE-TP-LLYSLVF 181 (439)
Q Consensus 105 ~l~~~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~-~~-~l~~~l~ 181 (439)
++||+.++ ....+..++..+..+.....+..+ ++++..++++|.+++.||.+.+.++++|.+ .+ |.++...
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l 154 (397)
T COG0475 81 RLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLIL 154 (397)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999 666666665554333322222223 899999999999999999999999999987 44 7999999
Q ss_pred ehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcchHHHHHHH
Q 013653 182 GEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILM 260 (439)
Q Consensus 182 ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (439)
+...++|..+++++.+...+.+++...... ..........-.++-...| ++..+..|+..+ .+.++.....++.+
T Consensus 155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~---~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~-~~~~e~~~~~~l~i 230 (397)
T COG0475 155 GALVFDDIAAILLLAIVPALAGGGSGSVGF---ILGLLLAILAFLALLLLLGRYLLPPLFRRVAK-TESSELFILFVLLL 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHH
Confidence 999999999999999998887553222111 1222222222222222334 555666666642 24566677889999
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHH-HHHHHHHHHhhcchhhhhhhhhccCCCC
Q 013653 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF-VAEIFIFLYVGMDALDIEKWRVVRDSPG 339 (439)
Q Consensus 261 ~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Fv~iG~~~~~~~~~~~~~~~~~ 339 (439)
++...+++|.+|+|.++|+|.+|+.+++...+ +++.++-.+.+.+ ++-++||+.+|+.++....+
T Consensus 231 ~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~------~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~-------- 296 (397)
T COG0475 231 VLGAAYLAELLGLSMILGAFLAGLLLSESEYR------KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL-------- 296 (397)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHhcccccc------hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh--------
Confidence 99999999999999999999999999953221 1456666677777 99999999999998554321
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhc
Q 013653 340 KSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYK 403 (439)
Q Consensus 340 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~ 403 (439)
+.............+.|.++.+...+.. +.++|++...+...-+||+.+++++..
T Consensus 297 ~~~~~~l~~~~~~i~~K~~~~~~~~~~~---------g~~~~~~~~~g~~~~~~ge~~~v~~~~ 351 (397)
T COG0475 297 ENLLLILLLVALAILGKILGAYLAARLL---------GFSKRLALGIGLLLRQGGEFAFVLAGI 351 (397)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCcHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 1223355667788899998888766433 578888888888775566666666544
No 14
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.96 E-value=4.8e-27 Score=226.51 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=207.2
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHH
Q 013653 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM 114 (439)
Q Consensus 35 ~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~ 114 (439)
.+...+.+.+| .++|+++++++.|+++||......+. . + .-+.+.++++.+++|.+|+|+|++++||++++..
T Consensus 3 ~a~~~~~l~~~-l~lP~~v~~il~GillGp~~lg~i~~--~---~-~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~ 75 (273)
T TIGR00932 3 AAVLAVPLSRR-LGIPSVLGYLLAGVLIGPSGLGLISN--V---E-GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAF 75 (273)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHhCcccccCCCC--h---H-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34445666665 67999999999999999854322110 0 0 1245788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCC-C-cchheeeehhhhhhHHHH
Q 013653 115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVFGEGVVNDATSV 192 (439)
Q Consensus 115 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~-~-~l~~~l~ges~~nD~~ai 192 (439)
..+..+++++.+.++...++.+ ++++..++++|+++++||++++.++++|.+. + +.++++.+|+.+||..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 76 GVGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 9999999998677676555655 8999999999999999999999999999984 4 789999999999999999
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhh
Q 013653 193 VLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFY 272 (439)
Q Consensus 193 ilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg 272 (439)
+++.+.....++.... ................+.+++.++...+..|+..+ +++++.....++.+++..+.++|.+|
T Consensus 150 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g 226 (273)
T TIGR00932 150 PLLALLPLLATSASTE--HVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLG 226 (273)
T ss_pred HHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 9999887765432111 11222333344555566677777777777777643 23345667788888999999999999
Q ss_pred chhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcch
Q 013653 273 LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDA 325 (439)
Q Consensus 273 ~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~ 325 (439)
.|+.+|++.+|+.++|.. + +++.++..+.+..++.+++|+.+|+++
T Consensus 227 ~s~~lgaf~aGl~~~~~~------~-~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESE------Y-RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CcHHHHHHHHHHHHcCCc------h-HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999999632 1 233555556666899999999999986
No 15
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.95 E-value=1e-25 Score=238.84 Aligned_cols=333 Identities=14% Similarity=0.075 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHH
Q 013653 28 LFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFF 107 (439)
Q Consensus 28 ~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~ 107 (439)
...+++..+.+.+.+++| .++|.++++++.|+++||......+. . . .-+.+.++++.+++|..|+|+|++.+|
T Consensus 9 ~~~~~l~~a~~~~~l~~r-l~~p~ilg~ilaGillGP~~lg~i~~--~--~--~i~~laelGvv~LLF~iGLel~~~~l~ 81 (601)
T PRK03659 9 AGVLFLFAAVVAVPLAQR-LGIGAVLGYLLAGIAIGPWGLGFISD--V--D--EILHFSELGVVFLMFIIGLELNPSKLW 81 (601)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhccccccCCCc--H--H--HHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344455566655666665 67999999999999999854332211 0 0 113478999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCC-C-cchheeeehhh
Q 013653 108 RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVFGEGV 185 (439)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~-~-~l~~~l~ges~ 185 (439)
+..+.++.++..++++++.+++...++ + +++|..++++|..++.||++.+.++++|.+. + +.++...+..+
T Consensus 82 ~~~~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll 154 (601)
T PRK03659 82 QLRRSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLL 154 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHH
Confidence 999999999999999988776655443 3 8899999999999999999999999999984 3 67889999999
Q ss_pred hhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Q 013653 186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILMAYLS 264 (439)
Q Consensus 186 ~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (439)
+||..+++++.+...+.....+...+...... + ...+..++.| ++..++.++... .+.++.....++.+++.+
T Consensus 155 ~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~ 228 (601)
T PRK03659 155 FQDLAVIPALALVPLLAGSADEHFDWMKIGMK----V-LAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGS 228 (601)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence 99998888877665443322111112111111 1 1112222233 334445555432 233455566677778888
Q ss_pred HHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchHHH
Q 013653 265 YMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGV 344 (439)
Q Consensus 265 ~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~~~ 344 (439)
.+++|.+|+|+.+|+|++|+++++. +.++..++-.+....++.++||+.+|+.++....+ +.+..
T Consensus 229 a~l~~~~Gls~~LGAFlaGl~l~~s-------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~--------~~~~~ 293 (601)
T PRK03659 229 ALFMDALGLSMALGTFIAGVLLAES-------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLY--------THLLW 293 (601)
T ss_pred HHHHHHhCccHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH--------HhHHH
Confidence 8999999999999999999999952 23344444445556688899999999998543211 12233
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhcc
Q 013653 345 SAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 345 ~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
.+...+..+++|+++++..... .+.++|++..++...-|||..+++++...
T Consensus 294 il~~~~~~l~~K~~~~~~~~~~---------~g~~~~~al~~g~~L~~~Gef~~vl~~~a 344 (601)
T PRK03659 294 VLISVVVLVAVKGLVLYLLARL---------YGLRSSERMQFAGVLSQGGEFAFVLFSAA 344 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3445566789999998876643 37899999998876559999999987654
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.95 E-value=5.4e-25 Score=232.39 Aligned_cols=338 Identities=14% Similarity=0.090 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHH
Q 013653 28 LFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFF 107 (439)
Q Consensus 28 ~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~ 107 (439)
.+..++..+.+.+.+++| .++|..+++++.|+++||......+ + ....+.+.++++.+++|..|+|+|++.+|
T Consensus 10 ~~~~~l~~a~~~~~l~~r-l~~P~ivg~IlaGillGp~~lg~~~----~--~~~~~~la~lGli~llF~~Gle~d~~~l~ 82 (558)
T PRK10669 10 TIVGGLVLAFILGMLANR-LRISPLVGYLLAGVLAGPFTPGFVA----D--TKLAPELAELGVILLMFGVGLHFSLKDLM 82 (558)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhCcccccccc----c--hHHHHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 334555666666766665 6799999999999999985432211 1 11234688999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccC-CC-cchheeeehhh
Q 013653 108 RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE-TP-LLYSLVFGEGV 185 (439)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~-~~-~l~~~l~ges~ 185 (439)
+.++.....+..+++.+.. .+...++.+ ++++..++++|++++.|+++.+.++++|.+ .+ +.+++..+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~ 155 (558)
T PRK10669 83 AVKSIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLI 155 (558)
T ss_pred HHhhHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHH
Confidence 9977666666666665544 344444444 899999999999999999999999999988 34 78999999999
Q ss_pred hhhHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHH
Q 013653 186 VNDATSVVLFNAIQSFDLSH-INLSIALKFVGSFFYLFI----ASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILM 260 (439)
Q Consensus 186 ~nD~~aiilf~~~~~~~~~~-~~~~~~~~~~~~~l~~~~----~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (439)
+||..+++++.+...+.... .+..+.........+.+. ...+..++..+...++.++... ++.++......+.+
T Consensus 156 ~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~ 234 (558)
T PRK10669 156 VEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLAL 234 (558)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHH
Confidence 99999988887765443210 011111111111122222 2222233333445555555432 22333334444555
Q ss_pred HHHHH-HHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCC
Q 013653 261 AYLSY-MLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPG 339 (439)
Q Consensus 261 ~~~~~-~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~ 339 (439)
++... ..+|.+|+|+.+|+|++|+++++. +.+++..+-...+..++.++||+.+|++++....++
T Consensus 235 ~l~~a~~~~~~lGls~~lGAflaGl~l~~~-------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~------- 300 (558)
T PRK10669 235 ALGIAFGAVELFDVSFALGAFFAGMVLNES-------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQ------- 300 (558)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHhCC-------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHH-------
Confidence 55444 457999999999999999999842 112222222233456789999999999985543222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhcc
Q 013653 340 KSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 340 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
........++..+++|+++++..+.. .+.++|++...|.+.-+||..+++++...
T Consensus 301 -~~~~~~~~~~~~~v~K~~~~~~~~~~---------~g~~~~~a~~~gl~l~~~Gef~lii~~~~ 355 (558)
T PRK10669 301 -QPLAVLATLAIIVFGKSLAAFFLVRL---------FGHSRRTALTIAASLAQIGEFAFILAGLG 355 (558)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChhhHHHHHHHHhcccchHHHHHHHH
Confidence 12222344566789999988876543 37799999999998888999999988764
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1e-14 Score=135.59 Aligned_cols=364 Identities=16% Similarity=0.185 Sum_probs=232.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcC
Q 013653 22 SVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV 101 (439)
Q Consensus 22 ~~~~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~ 101 (439)
++--+..+...+..+.++|.+..| .|+|..++|++.|++.||.. +++..+ .+ -...+.+++...+||..|++.
T Consensus 4 ~tpli~tiv~gl~lAFl~G~lA~r-lrlsPLVGyL~AGv~~gpft----pGFvad-~~-La~~LAelGViLLmFgvGLhf 76 (408)
T COG4651 4 DTPLITTIVGGLVLAFLLGALANR-LRLSPLVGYLLAGVLAGPFT----PGFVAD-QT-LAPELAELGVILLMFGVGLHF 76 (408)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhcCCCC----CCcccc-hh-HHHHHHHhhHHHHHHhcchhe
Confidence 334445556667777788888776 56999999999999999854 333221 11 123488999999999999999
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccC-CC-cc
Q 013653 102 KKKQFFRNFMTIMLFGAVGTLISFVIIS---AGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE-TP-LL 176 (439)
Q Consensus 102 ~~~~l~~~~~~~~~la~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~-~~-~l 176 (439)
+.+++...+. .++++.+.+..+.+ ....... ||++...+.+|-.+|-.|.++..+-++|++ .+ +-
T Consensus 77 slkdLLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~r 146 (408)
T COG4651 77 SLKDLLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQR 146 (408)
T ss_pred eHHHHhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence 9999876543 33444444433332 3333333 999999999999999999999999999987 33 55
Q ss_pred hheeeehhhhhhHHHHHHHHHHHHh---h-hcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCc
Q 013653 177 YSLVFGEGVVNDATSVVLFNAIQSF---D-LSHINLSIALKFVGSFFYLFIASTMLGVIAGL-LSAFIIKKLYMGRHSTD 251 (439)
Q Consensus 177 ~~~l~ges~~nD~~aiilf~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~-~~~~~~~~~~~~~~~~~ 251 (439)
+++..|=-...|...++.....=++ . +++.+..+....+...+.+...-..++.+.|. +.-|...+.... .+++
T Consensus 147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrE 225 (408)
T COG4651 147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRE 225 (408)
T ss_pred ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHH
Confidence 7888888899996665544332222 1 22223333333333334445555566666664 555666665432 2233
Q ss_pred chHHHHHHHHH-HHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhh
Q 013653 252 REVALMILMAY-LSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEK 330 (439)
Q Consensus 252 ~~~~~~l~~~~-~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~ 330 (439)
......+.++. .+|+.+|.+|.|.-+|+|++|++++.. |..++..+-.-.+...+..+||+.+|+..++...
T Consensus 226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-------elshraa~~slpLrdaFaVlFFvsVGmlf~P~~l 298 (408)
T COG4651 226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-------ELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMIL 298 (408)
T ss_pred HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-------hhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHh
Confidence 33344444443 456677899999999999999999832 2222222222345567888999999999866421
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhccccccCC
Q 013653 331 WRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGH 410 (439)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~~~~~~~ 410 (439)
.+.-...+.....++.+|-+..+.... ..+.+.|.++.++.+---.|+-+++++-.-.+. +-
T Consensus 299 --------~~~pl~vlatllii~~gKs~aaf~ivr---------~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l-~l 360 (408)
T COG4651 299 --------IQQPLAVLATLLIILFGKSVAAFFIVR---------AFGHPVRTALTISASLAQIGEFSFILAGLGIKL-NL 360 (408)
T ss_pred --------hcchHHHHHHHHHHHhhhHHHHHHHHH---------HhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhh-cc
Confidence 112233445567777888776655442 236677788877765433677888776543221 22
Q ss_pred cCCchhhHHHHHhhhhhh
Q 013653 411 TKLHGNAIMITSTITVVL 428 (439)
Q Consensus 411 ~~~~~~~~i~~~~~~vVl 428 (439)
.+..++|.+++.++.-|+
T Consensus 361 lp~~gr~LvlagailsIl 378 (408)
T COG4651 361 LPEAGRDLVLAGAILSIL 378 (408)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 344678888777655443
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.7e-14 Score=154.17 Aligned_cols=346 Identities=15% Similarity=0.104 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhhhhhhcCChHHHHH
Q 013653 33 LCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAGFQVKKKQFFR 108 (439)
Q Consensus 33 l~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~~g~~~~~~~l~~ 108 (439)
+.+..-+.+++-|+.++|.....++.|+++||..+..........++.+. +.+..++.-+.+|..|+++|.+.+||
T Consensus 31 i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~ 110 (769)
T KOG1650|consen 31 IIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRR 110 (769)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhc
Confidence 33333455666677789999999999999999877555433222222111 34667778888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHhhhcccccHHHHHHHhcccCC--Ccchheeee
Q 013653 109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK----IGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFG 182 (439)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~alllGails~Tdp~~v~~il~~~~~--~~l~~~l~g 182 (439)
+.++...++..+++++..............+.....+ ...-...+...+.|+-..+.+++.|.+. ++++++...
T Consensus 111 ~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~s 190 (769)
T KOG1650|consen 111 TGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALS 190 (769)
T ss_pred cCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhh
Confidence 9999988888888887544332322221111111111 1134667788999998888999999883 379999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 013653 183 EGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY 262 (439)
Q Consensus 183 es~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (439)
++.+||..++.++....+..+..... .......+...+......=.++=....|+.|+...++..++......+...+
T Consensus 191 aa~v~dv~~~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl 268 (769)
T KOG1650|consen 191 AAVVNDVAGWILLALALAFSSELKLS--PLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVL 268 (769)
T ss_pred hhhhhhHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHH
Confidence 99999999999888877766543211 1111222211121111111122233444444421111123345566788888
Q ss_pred HHHHHHHhhh-chhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCch
Q 013653 263 LSYMLAELFY-LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKS 341 (439)
Q Consensus 263 ~~~~lae~lg-~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~ 341 (439)
.+....+.++ .+++.|+++.|+.+.+.. +-.....+++.+.....+.+++|...|...+.... + .
T Consensus 269 ~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~-----p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i-~--------~ 334 (769)
T KOG1650|consen 269 ASAFLTDLIGGIHSIFGAFILGLAIPHGP-----PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRI-N--------K 334 (769)
T ss_pred HHHHHHHHhccccccchhheEEEecCCCC-----chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHH-H--------H
Confidence 8888899887 888999999999998533 32233344455555678999999999999743211 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhc
Q 013653 342 VGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYK 403 (439)
Q Consensus 342 ~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~ 403 (439)
+...........+.+++++...+.. .|+++||++.++..+.-||-+.+..=-.
T Consensus 335 ~~~~~~~i~~~~~~K~l~t~~~sl~---------~k~p~~~~l~l~~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 335 WGALIRTILIFGAVKLLSTLGTSLY---------CKLPLRDSLALGLLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------hcCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444566677888999888776653 3899999999999887788888765433
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.05 E-value=7.5e-08 Score=96.49 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=166.7
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhh
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAI 155 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l-------~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGai 155 (439)
+++-+....+-.|..|+|++.+.+ ||..-+ ..-++.|++.++ ..|+.+ +..-....-=-++
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPa-----liy~~~------n~~~~~~~~GW~I 131 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPA-----LIYVAV------NLAGGGALRGWAI 131 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHH-----HHHHHH------hCCchhhhhhhhh
Confidence 345566666777999999976533 332222 234455555543 345554 2221222222256
Q ss_pred cccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 156 FAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA 232 (439)
Q Consensus 156 ls~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~ 232 (439)
-++||.+.++.++...| .| +++..+.+-+.+||..+++...++. .++.+.. ..... ..
T Consensus 132 p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~---~L~~a---------~~---- 192 (423)
T PRK14853 132 PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLE---ALLLA---------LV---- 192 (423)
T ss_pred hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHH---HHHHH---------HH----
Confidence 68899999999998865 46 7899999999999999999877665 2222221 11100 11
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccC-C----chhhHHHHhHHH
Q 013653 233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV-T----ESSRVTTKHAFA 307 (439)
Q Consensus 233 G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~-~----~~~~~~~~~~~~ 307 (439)
.....+.+++. +.++ ....+.+....++..+..|.|+.+|.++.|+.+....+.+. + ++-.++.+|..+
T Consensus 193 ~~~~l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 193 PLALFWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred HHHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 11122333332 2222 22233335577889999999999999999999974222110 0 011234444444
Q ss_pred -HHHHHHHHHH-HHHhhcchhhhhhh-hhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhc-cCCCCCChhhh
Q 013653 308 -TLSFVAEIFI-FLYVGMDALDIEKW-RVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQ 383 (439)
Q Consensus 308 -~~~~~~~~l~-Fv~iG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~ 383 (439)
...++..|+| |.-.|..++....+ +.. ... ....+.+.++++|.++++..+++.-+.+. +.+++.+||+-
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~----~~p--v~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l 340 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAAL----TDP--IVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDV 340 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHh----hch--HHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHH
Confidence 4467889999 99999998542211 110 001 23455678889999999999988654432 45678889887
Q ss_pred hhhhc-cCCCccHHHHHhhhccc
Q 013653 384 LTIWW-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 384 ~~~~~-~glpRG~v~l~lA~~~~ 405 (439)
.-.+. +|+ -=.+++-.+...+
T Consensus 341 ~gv~~L~GI-GFTmSlFI~~LAf 362 (423)
T PRK14853 341 FGVALLAGI-GFTVSLLIGELAF 362 (423)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhc
Confidence 77666 452 3346666665544
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.56 E-value=4.5e-06 Score=82.32 Aligned_cols=273 Identities=15% Similarity=0.172 Sum_probs=163.1
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHH---HhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccC----CCCHHHHHHH
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFF---RNFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNIG----TLKIGDYLAI 152 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~---~~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~alll 152 (439)
+++-+....+-.|..|+|++.+.+. ++.|+. ..-+..|++.++ ..|..+.+ +.+ ||
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa-----~iy~~~n~-~~~~~~~GW-------- 119 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPA-----LIYLAFNA-NDPITREGW-------- 119 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHH-----HHHhheec-CCCcccCcc--------
Confidence 3455666666678999999877653 222332 223344544443 34554422 111 33
Q ss_pred hhhcccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 013653 153 GAIFAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLG 229 (439)
Q Consensus 153 Gails~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG 229 (439)
++=++||.+-...++.-.| .| .++..+..-+..||..+++.-.++. +++.+. .... .
T Consensus 120 -~IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~~i~~---~~L~-------------~ 179 (373)
T TIGR00773 120 -AIPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---TNDLSM---AALL-------------V 179 (373)
T ss_pred -ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---CCCCCH---HHHH-------------H
Confidence 3447799999888876544 56 6899999999999999988655443 222222 1111 1
Q ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHH
Q 013653 230 VIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATL 309 (439)
Q Consensus 230 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (439)
...+....+.++|. +.++ ....+......++..+..|.|+.+|.+..|+.+.+..+.+ ++..++.+|..+..
T Consensus 180 a~~~~~~l~~~~~~----~v~~--~~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~ 251 (373)
T TIGR00773 180 AAVAIAVLAVLNRC----GVRR--LGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPW 251 (373)
T ss_pred HHHHHHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHH
Confidence 11122233445544 2222 2222223333344447999999999999999998643222 22234566665554
Q ss_pred -HHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhc-cCCCCCChhhhhhh
Q 013653 310 -SFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTI 386 (439)
Q Consensus 310 -~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~ 386 (439)
.++..|+| |.-.|..++... .+. .... ....+.+..+++|.++++..+++.-+.+. +.+++.+||+-.-.
T Consensus 252 v~~lilPlFAFanAGv~l~~~~-~~~-----~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv 324 (373)
T TIGR00773 252 VAYLILPLFAFANAGVSLQGVS-LNG-----LTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAV 324 (373)
T ss_pred HHHHHHHHHHHHhcCeeeecCc-chh-----hcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 46788999 999999984422 111 0011 14456678889999999999998766654 55778899888777
Q ss_pred hc-cCCCccHHHHHhhhccc
Q 013653 387 WW-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 387 ~~-~glpRG~v~l~lA~~~~ 405 (439)
++ +|+ -=++++-.+...+
T Consensus 325 ~~L~GI-GFTmSlfI~~LAf 343 (373)
T TIGR00773 325 GVLCGI-GFTMSIFIASLAF 343 (373)
T ss_pred HHHHHH-HHHHHHHHHHHhc
Confidence 66 452 2346666555443
No 21
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.44 E-value=0.0013 Score=65.14 Aligned_cols=278 Identities=17% Similarity=0.183 Sum_probs=140.2
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFFR---NFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI 155 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~~---~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG-ai 155 (439)
+++-+....+-.|..|+|++.+...- +.|+. ..-++.|++.++ ..|..+.. +-+ . -.=| ++
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPa-----lIyl~~n~----~~~--~-~~~GW~I 124 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPA-----LIYLAFNA----GGP--E-AAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTH-----HHHGGG------SST--T-HHHHTSS
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHH-----HHHheeec----CCC--C-cCceEEe
Confidence 45667777777899999998775521 12221 223344444432 34444421 111 1 1112 56
Q ss_pred cccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 156 FAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA 232 (439)
Q Consensus 156 ls~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~ 232 (439)
=++||.+-.+.++.-.+ .| .++..+..-+.+||..+++.-.++.+ ++.+. .... ....
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~~---~~L~-------------~a~~ 185 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGISL---LWLL-------------LAAA 185 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------H---HHHH-------------HHHH
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCCH---HHHH-------------HHHH
Confidence 68999999999887544 55 68899999999999999987666542 11111 1111 1111
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccC--CchhhHHHHhHHHHH-
Q 013653 233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV--TESSRVTTKHAFATL- 309 (439)
Q Consensus 233 G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~- 309 (439)
+....+.++|. +.+. ...........++.-..-|.++-+|.+..|+.+....+.+. .....++.+|..+..
T Consensus 186 ~~~~l~~l~r~----~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 186 ALLLLFVLNRL----GVRS--LWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp HHHHHHHHHHT----T-----THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----CCce--ehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 12233445543 1111 22233334456666678899999999999999987654421 111223444444444
Q ss_pred HHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhc-cCCCCCChhhhhhhh
Q 013653 310 SFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIW 387 (439)
Q Consensus 310 ~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 387 (439)
++...++| |.=.|..+.....-+.. -.....+.+-.+++|.++++..+++..+.+. +++++.+||+-.-++
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~~~-------~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~ 332 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGDLT-------SPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVG 332 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---THH-------HHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHH
T ss_pred hhhhHHhHhheeCceEEecCchHhhh-------ChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 33444433 44446665332100000 0011223466789999999999888655543 456788998887777
Q ss_pred c-cCCCccHHHHHhhhccc
Q 013653 388 W-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 388 ~-~glpRG~v~l~lA~~~~ 405 (439)
. +|+ -=++++-.+-..+
T Consensus 333 ~LaGI-GFTmSLFIa~LAF 350 (378)
T PF06965_consen 333 LLAGI-GFTMSLFIAGLAF 350 (378)
T ss_dssp HHTT---HHHHHHHHHHHS
T ss_pred HHHHH-HHHHHHHHHHHHc
Confidence 6 552 3357776665544
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.31 E-value=0.015 Score=57.83 Aligned_cols=276 Identities=16% Similarity=0.165 Sum_probs=155.1
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCHHHHHHHh
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFFR---NFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNI---GTLKIGDYLAIG 153 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~~---~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~alllG 153 (439)
+++-+....+-.|..|+|++.+.+.- +.|+. ..-++.|++.++ ..|+.+..-+. .||.
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPA-----lIy~~~n~g~~~~~~GWg-------- 127 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPA-----LIYAAFNYNNPETLRGWA-------- 127 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHH-----HHHheeecCCCcccCccc--------
Confidence 45566667777799999998776532 22222 223344554443 34444422100 1333
Q ss_pred hhcccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 013653 154 AIFAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGV 230 (439)
Q Consensus 154 ails~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~ 230 (439)
+=.+||.+-.+.++.-.| .| .++..+..-+..||..+++.-.++. .++.+. .... ..
T Consensus 128 -IPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t~~i~~---~~L~-------------~a 187 (389)
T PRK09560 128 -IPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---TSDLSL---PALA-------------LA 187 (389)
T ss_pred -cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCCCH---HHHH-------------HH
Confidence 446799999998887554 56 6899999999999999988655443 222222 1111 01
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHH-
Q 013653 231 IAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATL- 309 (439)
Q Consensus 231 ~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~- 309 (439)
..+....+.++|. +.+ .....+......++.-..-|.++-+|.++.|+++....+.+.++...++.+|..+..
T Consensus 188 ~~~~~~l~~ln~~----~v~--~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v 261 (389)
T PRK09560 188 AIAIAVLFLLNRL----GVT--KLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWV 261 (389)
T ss_pred HHHHHHHHHHHHc----CCc--cchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhh
Confidence 1112233444543 111 122333455566777778899999999999999987332211111123444444443
Q ss_pred HHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhc-cCCCCCChhhhhhhh
Q 013653 310 SFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIW 387 (439)
Q Consensus 310 ~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 387 (439)
+++..++| |.=.|..+.+... ... .. . ....+.+-++++|.++++..+++.-+.+. +.+++.+||+-.-.+
T Consensus 262 ~~~IlPlFAlaNAGV~l~~~~~-~~~--~~--p--v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~ 334 (389)
T PRK09560 262 AFAILPLFAFANAGVSLAGISL-SSL--TS--P--VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVS 334 (389)
T ss_pred hhhhHHHHHhhcCCeeecCCcH-Hhc--cC--c--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 34444443 3334666532211 100 01 1 22344577889999999999998766554 556788888877666
Q ss_pred c-cCCCccHHHHHhhhccc
Q 013653 388 W-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 388 ~-~glpRG~v~l~lA~~~~ 405 (439)
. +|+ -=.+++-.+...+
T Consensus 335 ~L~GI-GFTmSLFIa~LAF 352 (389)
T PRK09560 335 VLCGI-GFTMSLFIGSLAF 352 (389)
T ss_pred HHHHH-HHHHHHHHHHhhc
Confidence 5 442 2246665555443
No 23
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.24 E-value=0.012 Score=58.28 Aligned_cols=274 Identities=14% Similarity=0.174 Sum_probs=151.4
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHH---HhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCHHHHHHHh
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFF---RNFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNI---GTLKIGDYLAIG 153 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~---~~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~alllG 153 (439)
+++-+....+-.|..|+|++.+... +++|+. ..-++.|++.++ ..|..+.+ +. .||
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPA-----lIy~~~n~-~~~~~~GW--------- 122 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPS-----LIYLSINH-DIKVINGW--------- 122 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHH-----HHHHhhcc-CCcccCcc---------
Confidence 4455666666778999999877542 222222 233344554443 34554421 10 122
Q ss_pred hhcccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 013653 154 AIFAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGV 230 (439)
Q Consensus 154 ails~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~ 230 (439)
++=++||.+-.+.++.-.| .| .++..+..-+..||..+++.-.++. .++.+. .... .....
T Consensus 123 ~IP~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~~i~~---~~L~-------~A~~~--- 186 (383)
T PRK14854 123 AIPSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TKSLSL---LSLS-------LGTLF--- 186 (383)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCccH---HHHH-------HHHHH---
Confidence 3557899999988877554 56 6888999999999999888655443 222221 1101 01111
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHH-HH
Q 013653 231 IAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFA-TL 309 (439)
Q Consensus 231 ~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (439)
....+.++|. ++.+. ....+......++.-..-|.++-+|.+..|+.+....++..+ ..++.+|..+ ..
T Consensus 187 ---~~~l~~~nr~---~~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~--pl~rleh~L~p~v 256 (383)
T PRK14854 187 ---ILAMIICNRI---FKINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDS--PANFMEDSLHPWI 256 (383)
T ss_pred ---HHHHHHHHHh---cCCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC--HHHHHHHHhhchH
Confidence 1112233332 11111 222344556667777788999999999999999863322111 1233433333 34
Q ss_pred HHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh-ccCCCCCChhhhhhhh
Q 013653 310 SFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTK-KSSHEKIGLKQQLTIW 387 (439)
Q Consensus 310 ~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 387 (439)
+++..++| |.=.|..+.+.. .+.. ... ....+.+-++++|.++++..+++.-+.+ -+.+++.+||+-.-.+
T Consensus 257 ~~~IlPlFA~aNAGV~l~~~~-~~~~----~~p--v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~ 329 (383)
T PRK14854 257 IYFILPVFAFANAGISFSGIS-FSIL----FEP--ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGIS 329 (383)
T ss_pred HHhhHHHHHhhcCCeeeccCc-HHhh----cCc--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 44444443 444466653221 1111 111 2234457788999999999998875543 2456678888877666
Q ss_pred c-cCCCccHHHHHhhhccc
Q 013653 388 W-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 388 ~-~glpRG~v~l~lA~~~~ 405 (439)
. +|+ -=.+++-.+-..+
T Consensus 330 ~L~GI-GFTmSLFIa~LAF 347 (383)
T PRK14854 330 LLCGI-GFTMSLFIGVLAF 347 (383)
T ss_pred HHHHH-HHHHHHHHHHhhC
Confidence 5 442 2346666655443
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.22 E-value=0.016 Score=57.66 Aligned_cols=273 Identities=16% Similarity=0.170 Sum_probs=153.7
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccC----CCCHHHHHHH
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFFR---NFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNIG----TLKIGDYLAI 152 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~~---~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~alll 152 (439)
+++-+....+-.|..|+|++.+.+.- +.|+. ..-++.|++.++ ..|+.+.+ +.+ ||
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPA-----liy~~~n~-~~~~~~~GW-------- 126 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPA-----LIYLLFNY-ADPVTREGW-------- 126 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHH-----HHHhheec-CCCcccCcc--------
Confidence 34556666677799999999876532 22222 223344444433 34555422 111 33
Q ss_pred hhhcccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 013653 153 GAIFAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLG 229 (439)
Q Consensus 153 Gails~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG 229 (439)
++=.+||.+-...++.-.| .| .++..+..-+..||..+++.-.++. .++.+. .... ..
T Consensus 127 -aIP~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~~---~~L~-------~a----- 187 (388)
T PRK09561 127 -AIPAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---TSDLSM---VSLG-------VA----- 187 (388)
T ss_pred -ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CCCccH---HHHH-------HH-----
Confidence 3457799999988886544 56 6899999999999999988655543 222222 1101 01
Q ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHH-
Q 013653 230 VIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFAT- 308 (439)
Q Consensus 230 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~- 308 (439)
.......+.++|. +.+ +....+......++.-..-|.++-+|.+..|+++....+++. +..++.+|..+.
T Consensus 188 -~~~~~~l~~ln~~----~v~--~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~--~pl~rleh~L~p~ 258 (388)
T PRK09561 188 -AVAIAVLAVLNLC----GVR--RTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAERLEHGLHPW 258 (388)
T ss_pred -HHHHHHHHHHHHc----CCc--cchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCC--CHHHHHHHHhhhh
Confidence 1111223444443 111 122233455566777778899999999999999986332221 112334444443
Q ss_pred HHHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhc-cCCCCCChhhhhhh
Q 013653 309 LSFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTI 386 (439)
Q Consensus 309 ~~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~ 386 (439)
.+++..++| |.=.|..+.+.. .+.. ... ....+.+-++++|.++++..+++.-+.+. +.+++.+||+-.-.
T Consensus 259 v~~~IlPlFAfaNAGV~l~~~~-~~~~----~~p--v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv 331 (388)
T PRK09561 259 VAFLILPLFAFANAGVSLQGVT-LDGL----TSP--LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAV 331 (388)
T ss_pred hhheeHHHHHhhcCCeeeccCc-HHhh----cCc--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 344444443 343466653221 1110 011 22344577889999999999988766554 55678899888776
Q ss_pred hc-cCCCccHHHHHhhhccc
Q 013653 387 WW-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 387 ~~-~glpRG~v~l~lA~~~~ 405 (439)
+. +|+ -=.+++-.+...+
T Consensus 332 ~~L~GI-GFTmSLFIa~LAF 350 (388)
T PRK09561 332 GVLCGI-GFTMSIFIASLAF 350 (388)
T ss_pred HHHHHH-HHHHHHHHHHHhc
Confidence 66 442 2246665554443
No 25
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.12 E-value=0.02 Score=57.86 Aligned_cols=275 Identities=15% Similarity=0.183 Sum_probs=152.7
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCHHHHHHHhh
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFFR---NFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNI--GTLKIGDYLAIGA 154 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~~---~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~alllGa 154 (439)
+++-+....+-.|..|+|++.+.+.- +.|+. ..-++.|++.++ ..|+.+.+-+. .|| +
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPA-----lIY~~~n~~~~~~~GW---------g 135 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPG-----LIYFFLNADTPSQHGF---------G 135 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHH-----HHHhheecCCCccCcc---------c
Confidence 34556666677789999998775532 22222 223344444433 44555422100 123 3
Q ss_pred hcccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 155 IFAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVI 231 (439)
Q Consensus 155 ils~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~ 231 (439)
+-++||.+-.+.++.-.| .| .++..+..-+..||..+++.-.++.+ .+.+. .... ...
T Consensus 136 IPmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~~L~-------------~a~ 196 (438)
T PRK14856 136 IPMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKF---AWLL-------------GAL 196 (438)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcH---HHHH-------------HHH
Confidence 557899999988886544 56 68899999999999999886555431 22221 1111 111
Q ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCC----------------
Q 013653 232 AGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVT---------------- 295 (439)
Q Consensus 232 ~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~---------------- 295 (439)
.+....+.++|. +.+ .....+......++.-..-|.++-+|.++.|+++....+++.+
T Consensus 197 ~~~~~l~~ln~~----~v~--~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~ 270 (438)
T PRK14856 197 GVVLVLAVLNRL----NVR--SLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSS 270 (438)
T ss_pred HHHHHHHHHHHc----CCc--cccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccc
Confidence 112233444544 111 1222333556667777788999999999999999763322100
Q ss_pred -----chh-----------------hHHHHhHHHHH-HHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHH
Q 013653 296 -----ESS-----------------RVTTKHAFATL-SFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGL 351 (439)
Q Consensus 296 -----~~~-----------------~~~~~~~~~~~-~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (439)
.++ .++.+|..+.. +++..++| |.=.|..+... .... . .. ....+.+-
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~-~~~~---~--~p--v~lGI~~G 342 (438)
T PRK14856 271 GALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSS-INLE---V--DK--VLLGVILG 342 (438)
T ss_pred ccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccc-hhhc---c--Cc--HHHHHHHH
Confidence 000 12333333333 33333333 33346665211 1000 0 11 22344577
Q ss_pred HHHHHHHHHHHhHHHhhhhhc-cCCCCCChhhhhhhhc-cCCCccHHHHHhhhccc
Q 013653 352 VLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 352 ~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~glpRG~v~l~lA~~~~ 405 (439)
++++|.++++..+++..+.+. +.+++.+|++-.-.+. +|+ -=.+++-.+...+
T Consensus 343 LvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGI-GFTmSLFIa~LAF 397 (438)
T PRK14856 343 LCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGI-GFTMSMFISNLAF 397 (438)
T ss_pred HHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 889999999999998766654 5577889988777666 442 2246666555443
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.11 E-value=0.023 Score=57.15 Aligned_cols=273 Identities=16% Similarity=0.133 Sum_probs=151.4
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFFR---NFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI 155 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~~---~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG-ai 155 (439)
+++-+....+-.|..|+|++.+.+.- +.|+. ..-++.|++.++ ..|+.+.+ +.+. .=| ++
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPA-----lIy~~~n~-~~~~-------~~GWgI 131 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPA-----ALYTALNA-GGPG-------ASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHH-----HHHheeec-CCCc-------cCcccc
Confidence 34556666667789999999776532 22222 223344444433 34554421 1110 112 35
Q ss_pred cccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 156 FAATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA 232 (439)
Q Consensus 156 ls~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~ 232 (439)
=++||.+-...++.-.| .| .++..+..-+..||..+++.-.++. .++.+. .... ....
T Consensus 132 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~~---~~L~-------------~a~~ 192 (423)
T PRK14855 132 PMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TSGLNL---LALL-------------LAAL 192 (423)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CCCCCH---HHHH-------------HHHH
Confidence 57899999998887554 56 6889999999999999887655443 222221 1111 0111
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCc----------------
Q 013653 233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTE---------------- 296 (439)
Q Consensus 233 G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~---------------- 296 (439)
+....+.++|. +.+ .....+......++.-..-|.++-+|.++.|+++....+++...
T Consensus 193 ~~~~l~~ln~~----~v~--~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 193 TWALALLAGRL----GVT--SLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred HHHHHHHHHHc----CCc--cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 12223444543 111 12223335556677777889999999999999997631111000
Q ss_pred -------h--------hhHHHHhHHHHH-HHHHHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 013653 297 -------S--------SRVTTKHAFATL-SFVAEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAF 359 (439)
Q Consensus 297 -------~--------~~~~~~~~~~~~-~~~~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~ 359 (439)
+ -.++.+|..+.. +++.-++| |.=.|..+.... ... ....+.+-++++|.++
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~---------~~p--v~lGI~~GLvvGK~lG 335 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG---------LGT--VSLGVFLGLLLGKPLG 335 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC---------CCc--HHHHHHHHHHhcchHH
Confidence 0 012333333333 33333332 333355552210 011 2334467788999999
Q ss_pred HHHhHHHhhhhhc-cCCCCCChhhhhhhhc-cCCCccHHHHHhhhccc
Q 013653 360 VFPLSFLSNLTKK-SSHEKIGLKQQLTIWW-AGLMRGAVSMALAYKQF 405 (439)
Q Consensus 360 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~glpRG~v~l~lA~~~~ 405 (439)
++..+++.-+.+. +.+++.+||+-.-.++ +|+ -=++++-.+-..+
T Consensus 336 I~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGI-GFTmSLFIa~LAF 382 (423)
T PRK14855 336 VVGGAWLAVRLGLASLPRRVNWLHMLGAGLLAGI-GFTMSLFISNLAF 382 (423)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhC
Confidence 9999998766554 5567888988776666 442 2246665554443
No 27
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.78 E-value=0.41 Score=47.09 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=76.8
Q ss_pred ccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccCCCCHHHHHHHhhh
Q 013653 79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAG---AVHFFKQMNIGTLKIGDYLAIGAI 155 (439)
Q Consensus 79 ~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~alllGai 155 (439)
..++|....+.+..+.|..|+++|.+++++..++.-.... +...+..+..+. .+.+.+. .....+..|-.
T Consensus 26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll~~~~~~l~~~------~~~~~l~~Gl~ 98 (313)
T PF13593_consen 26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLLGFGLSRLFPA------FLPPELALGLL 98 (313)
T ss_pred ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHhhc------cCCHHHHHHHH
Confidence 3444567777788899999999999999887666422221 122223333333 3333311 11233455544
Q ss_pred cccccHHHH---HHHhccc-CCCcchheeeehhhhhhHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHHHHHHHH
Q 013653 156 FAATDSVCT---LQVLNQD-ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDL-SHINLSIALKFVGSFFYLFIASTMLGV 230 (439)
Q Consensus 156 ls~Tdp~~v---~~il~~~-~~~~l~~~l~ges~~nD~~aiilf~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~iG~ 230 (439)
+.+.=|..+ +..-+.. |+.. ...-++.+++..++++.=....+.. ++....+..+.+.+....++.-.++|-
T Consensus 99 ~~~~lPtTv~S~v~~T~~AgGN~a---~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq 175 (313)
T PF13593_consen 99 ILACLPTTVSSSVVLTRLAGGNVA---LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQ 175 (313)
T ss_pred HHhhCCchhhHHHHHHHHcCCCHH---HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333333221 1222222 2321 1222566677777776555554433 222223445556666666766666666
Q ss_pred HHHHHHHHH
Q 013653 231 IAGLLSAFI 239 (439)
Q Consensus 231 ~~G~~~~~~ 239 (439)
.+.......
T Consensus 176 ~~r~~~~~~ 184 (313)
T PF13593_consen 176 LLRRWVPKW 184 (313)
T ss_pred HHHHHHHHH
Confidence 655444433
No 28
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.11 Score=50.07 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=143.1
Q ss_pred HHhhHHHhhhhhhcCChHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hhcccc
Q 013653 87 IYLLPPIIFNAGFQVKKKQFFR---NFMTI---MLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAAT 159 (439)
Q Consensus 87 ~i~L~~ilF~~g~~~~~~~l~~---~~~~~---~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG-ails~T 159 (439)
+-...+-.+..|+|++.+.+.- ++++. ..-+..|++.++ ..|..+. .+.| .. .=| ++-++|
T Consensus 68 DgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n-~~~p-----~~-~~GWaIP~AT 135 (390)
T COG3004 68 DGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALN-AGDP-----AT-LEGWAIPMAT 135 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheee-cCCh-----hh-hcCcCcccHH
Confidence 3334444467899999887743 33332 222334444432 3344431 1111 11 111 456789
Q ss_pred cHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 160 DSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLS 236 (439)
Q Consensus 160 dp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~ 236 (439)
|.+-...++.-.| .| .++..+.+-+.+||.-+++.-..+.. .+.+. .... ..+.. ...
T Consensus 136 DiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~---~al~-------~a~~~------i~v 196 (390)
T COG3004 136 DIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSM---AALG-------IAALA------IAV 196 (390)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccH---HHHH-------HHHHH------HHH
Confidence 9999999887654 56 68888999999999888886555532 22221 1101 11111 112
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHH-HHHHHHH
Q 013653 237 AFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFAT-LSFVAEI 315 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 315 (439)
...+++. +.+. ....+.+....+..-..=|.+.-+|.++.|++..-..++..+ .-++.+|..+. ..+...|
T Consensus 197 L~~lN~~----~v~~--l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~s--pl~~leh~L~pwvaf~IlP 268 (390)
T COG3004 197 LAVLNRL----GVRR--LSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGES--PLERLEHALHPWVAFFILP 268 (390)
T ss_pred HHHHHHh----Cchh--hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCC--cHHHHHHHhhhhHHHHHHH
Confidence 2233433 1111 112233333333333445677777777777766543322222 23344444443 3455555
Q ss_pred HH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh-ccCCCCCChhhhhhhhc-cCCC
Q 013653 316 FI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTK-KSSHEKIGLKQQLTIWW-AGLM 392 (439)
Q Consensus 316 l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~glp 392 (439)
+| |.=.|..+...+.-. .... ....+..-.+++|.++++.++++.-+.+ -+++++.+|++-.-.+. +|+
T Consensus 269 lFaFaNAGvsl~g~~~~~-----l~s~--l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI- 340 (390)
T COG3004 269 LFAFANAGVSLQGVSLSG-----LTSP--LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI- 340 (390)
T ss_pred HHHHccCCcccccccccc-----cccc--hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh-
Confidence 43 444566653322101 1112 2234456778999999999998864443 25677889988765554 663
Q ss_pred ccHHHHHhhhccc
Q 013653 393 RGAVSMALAYKQF 405 (439)
Q Consensus 393 RG~v~l~lA~~~~ 405 (439)
-=.+++.++...+
T Consensus 341 GFTMSlFI~~LAf 353 (390)
T COG3004 341 GFTMSLFIASLAF 353 (390)
T ss_pred hHHHHHHHHHHhc
Confidence 4457777776544
No 29
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.94 E-value=4 Score=39.89 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=87.8
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v 164 (439)
.....+..++|.-|++++.+++++..++-.... .+...+..+..+..+.+-. -.+.+..+..|-++-.+-|..+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vl-igl~~qfvlmPlla~~~~~-----~~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLVL-IGLAAQFVLMPLLALLLAK-----LFPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHhHHheeeCCCch
Confidence 457788999999999999999988766643332 3444555555544444321 2345567777877777777666
Q ss_pred HHHhcccCCC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 165 LQVLNQDETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL 243 (439)
Q Consensus 165 ~~il~~~~~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~~~~~ 243 (439)
.+..-..-.+ ++. .-.+++..+..++...-=....+..++....+.++.+.+.+...+.-.++|.++-....+..++.
T Consensus 113 ~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 113 ASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred hHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5533211111 111 11235556666666654444444333212223455566777777777777776666555555444
No 30
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.53 E-value=0.54 Score=42.47 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=51.1
Q ss_pred HhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHH
Q 013653 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (439)
Q Consensus 88 i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~i 167 (439)
+.+..++|..|.++|.+++++..++.-.+. .+.+.......+.++.+... -++.......|.++.+..|......
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence 356678999999999999998876643322 23334444444444433211 1344444555655544444433332
Q ss_pred hc-c--cCCCcchheeeehhhhhhHHHHHHHHHHHHhhhc
Q 013653 168 LN-Q--DETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLS 204 (439)
Q Consensus 168 l~-~--~~~~~l~~~l~ges~~nD~~aiilf~~~~~~~~~ 204 (439)
.- + .|+.. .-.+-..+|...+.+..=....+..+
T Consensus 77 ~~t~l~~Gd~~---ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 77 VFTYLAGGDVA---LSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHHTT--HH---HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCcc---cccceeeHHHHHHHHHHHHHHHHHhc
Confidence 22 1 12212 33334566666666654444444433
No 31
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.00 E-value=1.1 Score=43.77 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHhh-ccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHH
Q 013653 35 ACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTI 113 (439)
Q Consensus 35 ~~~~~~~~~~~-~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~ 113 (439)
.+...++.... ....|....-++.|+++|... ..++ .-..-.++..+.+.+++. -.-|.+++++++.+...+.
T Consensus 22 ~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~-~~~~-~~~~GI~fs~k~LLr~gI----vLlG~~ltl~~i~~~G~~~ 95 (334)
T COG2855 22 LAMLLGAFFFSIHLGLSALTLAILLGILLGILP-QIPA-QTSAGITFSSKKLLRLGI----VLLGFRLTLSDIADVGGSG 95 (334)
T ss_pred HHHHHhchHHhhhcCchHHHHHHHHHHHHhccc-cchh-hhccchhhhHHHHHHHHH----HHHcceeeHHHHHHcCccH
Confidence 33344444432 334677777888888888321 1111 111223455556666666 3458899999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh---hhcccccHHHHHHHhcccCCCcchheeeehhhhhhHH
Q 013653 114 MLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDAT 190 (439)
Q Consensus 114 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG---ails~Tdp~~v~~il~~~~~~~l~~~l~ges~~nD~~ 190 (439)
+......+..+ +..++...-++ +.|+..+++.| +|..+...+++.|+.|. +.+++..-+..-.++|. +
T Consensus 96 v~~~~~~l~~t-~~~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika-~~~eva~aIa~V~lfgt-i 166 (334)
T COG2855 96 VLIIAITLSST-FLFAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKA-EEEEVAVAIAVVVLFGT-L 166 (334)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCC-CccccceehhhHHHHHH-H
Confidence 76665544443 33333322244 89999999998 45556666666666652 22244444555555655 3
Q ss_pred HHHHHHHH
Q 013653 191 SVVLFNAI 198 (439)
Q Consensus 191 aiilf~~~ 198 (439)
+..+|-.+
T Consensus 167 a~llyP~l 174 (334)
T COG2855 167 AMLLYPLL 174 (334)
T ss_pred HHHHHHHH
Confidence 33344433
No 32
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.86 E-value=1 Score=40.04 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=60.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChH---HHHHhHHHHHHHHHHHHHH
Q 013653 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QFFRNFMTIMLFGAVGTLI 123 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~---~l~~~~~~~~~la~~~~~~ 123 (439)
.++-...+.++.|+++|......+...+ .-.++.+.++++.+-++..|++.-.+ .+|++..+...+++....+
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~----~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~ 96 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLP----ISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLV 96 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455556889999999975433222211 11245678889988889999988744 5666766777777666666
Q ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhc
Q 013653 124 SFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (439)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~alllGail 156 (439)
+........++++ +++. ....|..-
T Consensus 97 ~~~~~~~~~~~~~------~l~~--~~~~G~~a 121 (169)
T PF06826_consen 97 PLLIALVIGRYLF------KLNP--GIAAGILA 121 (169)
T ss_pred HHHHHHHHHHHHc------CCCH--HHHHHHHH
Confidence 5555444454454 5553 33445544
No 33
>COG2431 Predicted membrane protein [Function unknown]
Probab=93.11 E-value=2.3 Score=40.33 Aligned_cols=88 Identities=23% Similarity=0.253 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCC---hH--HHHHhHHHHHHHHHHHHHHHHH
Q 013653 52 SITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK---KK--QFFRNFMTIMLFGAVGTLISFV 126 (439)
Q Consensus 52 ~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~---~~--~l~~~~~~~~~la~~~~~~~~~ 126 (439)
.....+.|+++|....... + +++.-.++.|-.++|..|+++. .. +.+=| |+.+.+++. ++++..
T Consensus 109 ~~~~vl~g~~~G~l~~~~~--------~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i-~ilssl 177 (297)
T COG2431 109 LLGVVLLGLALGLLTGSFL--------N-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFI-TLLSSL 177 (297)
T ss_pred HHHHHHHHHHHHHHhcccc--------c-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHH-HHHHHH
Confidence 4455777888886543221 1 3556778888899999999887 22 22223 445555543 456667
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHhhhc
Q 013653 127 IISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~alllGail 156 (439)
..|....+++ ++|+.+++.+++=.
T Consensus 178 iGG~iaa~~l------~lpl~~~lAmasG~ 201 (297)
T COG2431 178 IGGLIAAFLL------DLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHH------hccHHHHHHHHhcc
Confidence 7777777776 78888887776544
No 34
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.69 E-value=1.7 Score=46.85 Aligned_cols=70 Identities=10% Similarity=0.210 Sum_probs=51.0
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDS 161 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp 161 (439)
+..+++|+.....|+++|++.+.+++..++.+....++.-...+..... .. ++++..++.+|..+++...
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Ge 335 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGE 335 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhcccc
Confidence 6788888888999999999999988776655544444444444333332 22 8899999999988887764
No 35
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.41 E-value=12 Score=36.71 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=64.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHH
Q 013653 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~ 126 (439)
..++.....++.|+++|......++. -.+-.++..+.+.++++ -.-|.+++..++.+...+........+..+..
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~~~-~~~Gi~~~~k~~Lr~gI----VLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLPAR-FKPGIKFSSKKLLRLGI----VLLGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCcHH-HHhHHHHHHHHHHHHHH----HHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 34566666677777776311111110 01112222334555554 55689999999999999887777666666544
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHhh---hcccccHHHHHHHhcc
Q 013653 127 IISAGAVHFFKQMNIGTLKIGDYLAIGA---IFAATDSVCTLQVLNQ 170 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~alllGa---ils~Tdp~~v~~il~~ 170 (439)
.......-.+ +.+...+.++|+ +..++..+++.++.|.
T Consensus 99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 4333331222 788888888884 4445555555555553
No 36
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=92.41 E-value=14 Score=37.44 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=75.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHH
Q 013653 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~ 126 (439)
+++|..+...+.++++...... .+...++. -+.+.++.+|.-++.-=++.|.|+++|..++.+..=..+ .+...
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~~----y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~g~v 96 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSPV----YDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AVGTV 96 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc-CCCCcchH----HHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HHHHH
Confidence 4677777777777777643211 00011111 134677788888888888999999999888754332223 33334
Q ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHhhhccccc-HHHHHHHhcccCCCcchheeeehhhhhhHHHHHHHHHHHHh
Q 013653 127 IISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATD-SVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSF 201 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~alllGails~Td-p~~v~~il~~~~~~~l~~~l~ges~~nD~~aiilf~~~~~~ 201 (439)
+.+...+.+++....++..-..+.+-|+-..-+- -+++...+ +.+ .+.....-..|+..+-+.+.+...+
T Consensus 97 iG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al---~~~--~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 97 IGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEAL---GVS--DSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHH---CCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666543112211223556666664443 44444443 332 1233334445555555555554444
No 37
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.01 E-value=2.4 Score=45.86 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=49.8
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDS 161 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp 161 (439)
+..+++|+.....|+++|++.+.++++.++.+....++.-...+.....+ . ++++..++.+|..++.-..
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~------g~~~~~a~~~gl~L~~~Ge 338 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L------GVPRKQRRWFAVLLGQGGE 338 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHhHHHHHHHHHhcccc
Confidence 66788888888899999999998887766555444444444443333333 2 8999999999998876553
No 38
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.86 E-value=0.9 Score=41.22 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCC-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013653 55 ALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVIIS 129 (439)
Q Consensus 55 ~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~-----~~~l~~~~~~~~~la~~~~~~~~~~~~ 129 (439)
.+..|+++|.... ++ .+. ++...++.|..++|..|.++. ++++|+..++.+.+.... ++...+.+
T Consensus 4 ~li~Gi~lG~~~~--~~------~~~-~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllgg 73 (191)
T PF03956_consen 4 ALILGILLGYFLR--PP------FSL-IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLGG 73 (191)
T ss_pred eHHHHHHHHHHhc--cc------ccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHH
Confidence 4678888886432 11 111 134777788889999999874 446676778888777654 44456666
Q ss_pred HHHHHHHhhcccCCCCHHHHHHHhhhcc
Q 013653 130 AGAVHFFKQMNIGTLKIGDYLAIGAIFA 157 (439)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~alllGails 157 (439)
.....++ ++|+.+++.+|+=.+
T Consensus 74 ~l~~~ll------~~~~~~~lav~sG~G 95 (191)
T PF03956_consen 74 LLASLLL------GLSLKESLAVASGFG 95 (191)
T ss_pred HHHHHHh------cCCHHHHHHHHccCc
Confidence 6666666 889999888876544
No 39
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=91.82 E-value=11 Score=36.52 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=65.6
Q ss_pred hHHHhhhhhhcCChHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHH
Q 013653 90 LPPIIFNAGFQVKKKQFFRNFMT--IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (439)
Q Consensus 90 L~~ilF~~g~~~~~~~l~~~~~~--~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~i 167 (439)
+..++|..|.+++.+++++..++ ....+.. ....+....++.+...+ +. ......|.++.+..|..+...
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~---~~~vi~Plla~~l~~~~---~l--~~~~~~glvL~~~~P~~~~s~ 85 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLL---AQYGIMPLTGFLLAKVF---KL--PPELAVGVLIVGCCPGGTASN 85 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHH---HHHHHHHHHHHHHHHHh---CC--CHHHHHHHHheeeCCCchHHH
Confidence 78889999999999999987763 2222222 22222232322221111 33 345566666655555444433
Q ss_pred h-cc-c-CCCcchheeeehhhhhhHHHHHHHHHHHHhhhcc-cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 168 L-NQ-D-ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSH-IN---LSIALKFVGSFFYLFIASTMLGVIAGLLS 236 (439)
Q Consensus 168 l-~~-~-~~~~l~~~l~ges~~nD~~aiilf~~~~~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~iG~~~G~~~ 236 (439)
. .+ . ++.+.. .+-..++...+++..-....+..+. .+ ..+..+...+ +.....-..+|..+-...
T Consensus 86 v~t~~~~gn~~la---~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~ 157 (286)
T TIGR00841 86 VFTYLLKGDMALS---ISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKL 157 (286)
T ss_pred HHHHHhCCCHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 2 22 2 222332 2233455555555544433332221 01 1234445555 556666666666555443
No 40
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=91.51 E-value=15 Score=36.10 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=78.6
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMT---IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDS 161 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~---~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp 161 (439)
-..+++...++-.=.++|++++++..+. ....-+...++..+......+.+++ ..| .+..|.++-.-.|
T Consensus 52 piai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la~~fl~-----~~p---ey~~GlILlglAp 123 (342)
T COG0798 52 PIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALAWFFLP-----DEP---EYRAGLILLGLAP 123 (342)
T ss_pred hHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCH---HHHHHHHHHHhhh
Confidence 4566677777877789999988877655 3333344555555444444444442 333 4455555544444
Q ss_pred HHHHHHh-cccCCCcchheeeehhhhhhHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 162 VCTLQVL-NQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHI-NLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239 (439)
Q Consensus 162 ~~v~~il-~~~~~~~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~iG~~~G~~~~~~ 239 (439)
=....+. ++.. +--.+....--.+||...+++|........+.. ...++.+...+++..+..- .+.|....+.
T Consensus 124 C~aMVivw~~La-~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iP----li~G~lTR~i 198 (342)
T COG0798 124 CIAMVIVWSGLA-KGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIP----LIAGVLTRYI 198 (342)
T ss_pred hHHHHHHHHhhc-cCcHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3332222 2211 111233445678999999999986655433311 1223444454444444333 3455567776
Q ss_pred HHHH
Q 013653 240 IKKL 243 (439)
Q Consensus 240 ~~~~ 243 (439)
..|.
T Consensus 199 ~~k~ 202 (342)
T COG0798 199 LIKK 202 (342)
T ss_pred HHHh
Confidence 6665
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.35 E-value=3.6 Score=41.91 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=64.9
Q ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHH-HhhHHHhhhhhhcCChHHHHHhHHHHHHHHH
Q 013653 40 GHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFI-YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA 118 (439)
Q Consensus 40 ~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~ 118 (439)
+.+.+. ..++...+..+.|+++.-. ....+..+-+-+-+.+ +++|+-....|+++|.+.+.+++..+..+..
T Consensus 235 a~l~e~-~gls~ilGAFlaGl~ls~~------~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~ 307 (397)
T COG0475 235 AYLAEL-LGLSMILGAFLAGLLLSES------EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVA 307 (397)
T ss_pred HHHHHH-hChhHHHHHHHHHHHhccc------ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHH
Confidence 444443 4466777777777666421 1110111112234777 8999999999999999999999888666655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhccccc
Q 013653 119 VGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATD 160 (439)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Td 160 (439)
..+..-........+. . +++...+...|....+--
T Consensus 308 ~~i~~K~~~~~~~~~~-~------g~~~~~~~~~g~~~~~~g 342 (397)
T COG0475 308 LAILGKILGAYLAARL-L------GFSKRLALGIGLLLRQGG 342 (397)
T ss_pred HHHHHHHHHHHHHHHH-H------cCcHHHHHHHHhhhhhhh
Confidence 5544444333333333 2 677777777777665543
No 42
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=91.09 E-value=6 Score=35.87 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCcccccc---------ChhHHHHHhhHHHhh
Q 013653 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMF---------SEDLFFIYLLPPIIF 95 (439)
Q Consensus 25 ~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~---------~~~~~~~i~L~~ilF 95 (439)
.+....++......+++-+.| .|+|.+...++.|+++.........+.. -+.++ ....+.+.+. -
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~-Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-GlaDi~lfsGiglmGGaMlRDfAI----v 90 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTK-GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLADIAIFGGFGLMGGAMLRDLAI----V 90 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHcccccCCcc-ccchhhhhcchhhhhhHHHHHHHH----H
Confidence 344444444444444444443 5799999999999999876543333221 11111 0011233333 6
Q ss_pred hhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 96 NAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVH 134 (439)
Q Consensus 96 ~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~ 134 (439)
..++|+|.++.||....-..--+.++++++......++.
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a 129 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWA 129 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998876655566777765554444433
No 43
>PRK04972 putative transporter; Provisional
Probab=90.80 E-value=3.7 Score=43.77 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=87.7
Q ss_pred HHHhhhhh---ccccchhHHHHHHHHHHHHHHHHHHHHhhccccc----hhHHHHHHHHHHHHHHHhhcCCCCccccccC
Q 013653 9 MERSLSML---SSDHKSVVSMNLFVALLCACIVIGHLLEENRWMN----ESITALIIGLCTGIVILLTTNGTSSHVLMFS 81 (439)
Q Consensus 9 ~~~~~~~~---~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~iP----~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~ 81 (439)
+++..+.+ ..++...+.+.+. +-++++.++|.+--+...+| ...+.++.|+++|..-...+.. ..++
T Consensus 364 i~~l~~~lG~~~~~~~~~d~~~~~-~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~-----~~~p 437 (558)
T PRK04972 364 VKTIADRIGFISIHSQVTDLLAFC-AFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTF-----GYIP 437 (558)
T ss_pred HHHHHHHhCCcccccccCcHHHHH-HHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCc-----eeeC
Confidence 44444443 3344444444443 33455666665544322233 3456789999999643222211 1222
Q ss_pred h---hHHHHHhhHHHhhhhhhcCC---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhh
Q 013653 82 E---DLFFIYLLPPIIFNAGFQVK---KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAI 155 (439)
Q Consensus 82 ~---~~~~~i~L~~ilF~~g~~~~---~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGai 155 (439)
+ ..+.+++|.+-+...|++-- .+.++++.++.+..+...++++.+...+..++++ +.++. .+.|++
T Consensus 438 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~------k~~~~--~~~G~~ 509 (558)
T PRK04972 438 QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL------RMNRA--LLFGAI 509 (558)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCHH--HHHHHH
Confidence 2 24678888877777777665 4466777777777777777777666666676766 66655 567777
Q ss_pred c-ccccHHHHHHHhcccC
Q 013653 156 F-AATDSVCTLQVLNQDE 172 (439)
Q Consensus 156 l-s~Tdp~~v~~il~~~~ 172 (439)
. +-|+|++.....+..+
T Consensus 510 aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 510 MGARTCAPAMEIISDTAR 527 (558)
T ss_pred hCCCCCcHHHHHHHhhcC
Confidence 6 4566766655555444
No 44
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=90.54 E-value=8 Score=38.10 Aligned_cols=108 Identities=9% Similarity=-0.057 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHh
Q 013653 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRN 109 (439)
Q Consensus 30 ~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~ 109 (439)
..+...+...+.+.+ +.|+|. +.++..++.+.......... .. -|+.+...+-..+-...|.++|.+.+|+.
T Consensus 158 ~~l~~~~~~g~~l~~-~l~iPa--~~llGpml~~a~~~~~~~~~----~~-~P~~l~~~aqv~iG~~iG~~f~~~~l~~~ 229 (318)
T PF05145_consen 158 ALLALAALAGGLLAR-RLRIPA--PWLLGPMLVSAILNLFGGPS----FS-LPPWLVNAAQVLIGASIGSRFTRETLREL 229 (318)
T ss_pred HHHHHHHHHHHHHHH-HhCCCc--HHHHHHHHHHHHHHHHhCCC----CC-CCHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 334444444445444 455774 33444445444433332111 12 25667778888888899999998888777
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 013653 110 FMTIMLF--GAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (439)
Q Consensus 110 ~~~~~~l--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~all 151 (439)
.+..... .....+..+...+...+.+. ++++..+++
T Consensus 230 ~~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L 267 (318)
T PF05145_consen 230 RRLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 6554222 22233333444444444444 788887643
No 45
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.36 E-value=6.3 Score=42.02 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=46.4
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~ 163 (439)
+...++|+.....|+++|+..+.+++..+........+.-........ ... +.++..++..|..+++-..-.
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~-~~~------g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLV-RLF------GHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCChhhHHHHHHHHhcccchH
Confidence 457788888888999999999887765443332223233322222222 222 789999999999988765433
No 46
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.10 E-value=23 Score=35.72 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhh-----hchhhHHHHHHHHHhhccccc
Q 013653 259 LMAYLSYMLAELF-----YLSGILTVFFCGIVMSHYTWH 292 (439)
Q Consensus 259 ~~~~~~~~lae~l-----g~sgila~~~~Gl~~~~~~~~ 292 (439)
......+++.+.+ ++...+.+++.|++++|..++
T Consensus 228 i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~ 266 (368)
T PF03616_consen 228 IAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDK 266 (368)
T ss_pred HHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHH
Confidence 3344555555544 567789999999999986543
No 47
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.78 E-value=13 Score=32.46 Aligned_cols=106 Identities=10% Similarity=-0.071 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHH
Q 013653 34 CACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTI 113 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~ 113 (439)
..+...+.++++ .++|. +.++..++.+.......... .. -|+.+...+...+-...|.+++.+.+++..+..
T Consensus 5 ~~~~~~g~l~~~-l~~Pa--~~llG~mi~~~~~~~~~~~~----~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~ 76 (156)
T TIGR03082 5 LVGLAGGLLASL-LGLPA--AWLLGPLLAGAVLSLAGGLE----IT-LPPWLLALAQVVIGILIGSRFTREVLAELKRLW 76 (156)
T ss_pred HHHHHHHHHHHH-HCCCc--HHHHHHHHHHHHHHhcCCcc----CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 344455666644 55774 44555555555443222111 11 355677888888888999999988877766554
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhh
Q 013653 114 MLFG--AVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGA 154 (439)
Q Consensus 114 ~~la--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGa 154 (439)
.... ...++..+...+...+... ++++..++ +|+
T Consensus 77 ~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~-La~ 112 (156)
T TIGR03082 77 PAALLSTVLLLALSALLAWLLARLT------GVDPLTAF-LAT 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHH-HHh
Confidence 3222 2222222333333333333 88888884 443
No 48
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=89.76 E-value=1.9 Score=46.04 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHH
Q 013653 26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ 105 (439)
Q Consensus 26 i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~ 105 (439)
++.+++.+.++..+|++=-|..++-.+.+.+++|+++|... . +. |+.+.++++.+-+|..|++.-.+.
T Consensus 12 ~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g------~-----~i-~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLG------I-----QI-DPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcC------C-----CC-ChHHHHHHHHHHHHHhhhccCHHH
Confidence 33333334444444443323334544577889999999531 1 12 234778899999999999999665
Q ss_pred H---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--HHHHHHHhhhcccccHHHHHHHhcccC
Q 013653 106 F---FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK--IGDYLAIGAIFAATDSVCTLQVLNQDE 172 (439)
Q Consensus 106 l---~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~alllGails~Tdp~~v~~il~~~~ 172 (439)
+ ||...+...+++..++. .+++++..++++ +++ ....++=|+..++..-++....+++.+
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~-~~~~~~~~~~~~------g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVS-GLITVYALAKIF------GLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHHh------CCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 5 44444445555443333 444455555555 554 445566677666666666666665554
No 49
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=88.83 E-value=26 Score=34.67 Aligned_cols=140 Identities=13% Similarity=0.032 Sum_probs=69.1
Q ss_pred HhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHH
Q 013653 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (439)
Q Consensus 88 i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~i 167 (439)
+.+.+++|..|.+++.+++||..++--.. ..+...+.......++.+...+ ++....+..|-++.+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~-~~~~~~qfvi~Plla~~l~~l~----~~~~p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGL-ILSLFINWIIGPFLMFLLAWLF----LRDLFEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHhcchHHHHH
Confidence 45557899999999999999887664322 2233444444444443332110 122234566666655555444333
Q ss_pred h-ccc--CCCcchheeeehhhhhhHHHHHHHHHHHHhhhc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 168 L-NQD--ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLS--------HINLSIALKFVGSFFYLFIASTMLGVIAGLL 235 (439)
Q Consensus 168 l-~~~--~~~~l~~~l~ges~~nD~~aiilf~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~iG~~~G~~ 235 (439)
. ... |+.... ..-..+|...+.++.-.......+ +.-..+..+...+.+.....-.++|...-..
T Consensus 122 v~T~lAkGnvals---v~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~ 197 (328)
T TIGR00832 122 VWNQLAKGDPEYT---LVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYW 197 (328)
T ss_pred HHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 211 221111 123366676666655333221111 0001234455566666666666666654433
No 50
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=88.64 E-value=4.7 Score=45.13 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=44.3
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNF--MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSV 162 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~--~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~ 162 (439)
...+++|+.....|+++|++.+.... ..+..+.+.+.+.-... ++....+. ++|+..++.+|.++++-.-.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g-~~l~a~~~------g~~~~eal~lG~lm~~kG~~ 395 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMG-TIIIAFFY------TMPFREGITLGFLMNTKGLV 395 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHh------CCCHHHHHHHHHHHhcccHH
Confidence 35788888889999999998885431 12222222222222222 22222222 89999999999999887643
Q ss_pred H
Q 013653 163 C 163 (439)
Q Consensus 163 ~ 163 (439)
.
T Consensus 396 ~ 396 (832)
T PLN03159 396 E 396 (832)
T ss_pred H
Confidence 3
No 51
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=87.77 E-value=33 Score=34.55 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred HHHHHHhh------ccccchhHHHHHHHHHHHHHHHhhcCCCCccccccC---hhHHHHHhhHHHhhhhhhcCChHHHHH
Q 013653 38 VIGHLLEE------NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFS---EDLFFIYLLPPIIFNAGFQVKKKQFFR 108 (439)
Q Consensus 38 ~~~~~~~~------~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~---~~~~~~i~L~~ilF~~g~~~~~~~l~~ 108 (439)
++|+.++| |-.+|+++.-=++..++++..+...... .++| ++.+..++ -=..|+.-|.+.+||
T Consensus 19 llG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~----~~fd~~l~~~fmliF----Fttiglsa~~~~lkk 90 (404)
T COG0786 19 LLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVS----LNFDTSLQDVFMLIF----FATIGLSASFKLLKK 90 (404)
T ss_pred HHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEE----EeCCcccccHHHHHH----HHHhccccchhHHHh
Confidence 46777764 3467887655445555555444222111 1121 12233222 235688999999999
Q ss_pred hHHHHHHHHHHHH
Q 013653 109 NFMTIMLFGAVGT 121 (439)
Q Consensus 109 ~~~~~~~la~~~~ 121 (439)
-+|+.........
T Consensus 91 gGk~l~if~~~a~ 103 (404)
T COG0786 91 GGKKLAIFLATAA 103 (404)
T ss_pred cChhHHHHHHHHH
Confidence 9998765554433
No 52
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=87.71 E-value=21 Score=35.93 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCCh
Q 013653 25 SMNLFVALLCACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK 103 (439)
Q Consensus 25 ~i~~~~~ll~~~~~~~~~~~~-~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~ 103 (439)
.+.++.+.+..+..++..+++ ...+|.-+..++.|+++--......... ..+-.-+.+....+-+.+..+=.++|.
T Consensus 222 ~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~---id~~~i~~I~~~sL~~fl~~almsl~l 298 (368)
T PF03616_consen 222 HLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYK---IDRKTIDRISGISLDLFLAMALMSLKL 298 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCccc---CCHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 333333334444445555553 3467877777777777765433222111 111112356777888888888889999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 013653 104 KQFFRNFMTIMLFGAVGTLISFVI 127 (439)
Q Consensus 104 ~~l~~~~~~~~~la~~~~~~~~~~ 127 (439)
..+.++..+.+.+-..+++++.+.
T Consensus 299 ~~l~~~a~Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 299 WVLADYALPLLIILAVQTILMVLF 322 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887776776665444
No 53
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=87.68 E-value=6.3 Score=38.56 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCC--hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013653 51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK--KKQFFRNFMTIMLFGAVGTLISFVII 128 (439)
Q Consensus 51 ~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~--~~~l~~~~~~~~~la~~~~~~~~~~~ 128 (439)
..+.+++.|+++|.... +++. ...-.+. +-.+.-.|++.+.+-|++-- .+++||..+.....++..=++...+.
T Consensus 178 ~sv~LLlGgliIG~~~g--~~g~-~~i~pf~-~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig 253 (327)
T PF05982_consen 178 KSVVLLLGGLIIGFLAG--PEGV-ESIKPFF-VDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALIG 253 (327)
T ss_pred chHHHHHHHHHHhheeC--ccch-hhccchh-hccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34566778899986431 1111 1111111 12455677777788888553 56788887777666655444443333
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhccc
Q 013653 129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD 171 (439)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~ 171 (439)
.... ... |++...+.+++.+.++-|=.++-+.+|..
T Consensus 254 ~~lg-~~~------gls~Gg~~llavLaASASYIAvPAAmR~A 289 (327)
T PF05982_consen 254 IGLG-WLL------GLSPGGAVLLAVLAASASYIAVPAAMRAA 289 (327)
T ss_pred HHHH-HHh------CCCCccHHHHHHHHhhHhhhhhhHHHHhh
Confidence 2333 333 89999999999999888877766777643
No 54
>PRK03818 putative transporter; Validated
Probab=87.45 E-value=5.2 Score=42.60 Aligned_cols=103 Identities=14% Similarity=0.210 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhhhhhcC
Q 013653 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQV 101 (439)
Q Consensus 25 ~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~g~~~ 101 (439)
+++.+.+.+..+..+|++=-+..++- ..+.++.|+++|.... ... ...++ +.+.++++.+-+|..|++.
T Consensus 7 ~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~----~~~---~~~~~~~~~~~~~~gl~lFv~~vGl~~ 78 (552)
T PRK03818 7 TVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVS----QFG---LTLDSDMLHFIQEFGLILFVYTIGIQV 78 (552)
T ss_pred HHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccc----ccC---cccChHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455555555555555211222232 4677888888885321 111 11122 2366889999999999998
Q ss_pred ChH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 102 KKK---QFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (439)
Q Consensus 102 ~~~---~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 136 (439)
-.+ .+|++..+...+++..++... ++++..++++
T Consensus 79 Gp~f~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~ 115 (552)
T PRK03818 79 GPGFFSSLRKSGLRLNLFAVLIVILGG-LVTAILHKLF 115 (552)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 855 556655566666655544433 3355555555
No 55
>PRK04972 putative transporter; Provisional
Probab=86.50 E-value=6.8 Score=41.78 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChH---HH
Q 013653 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QF 106 (439)
Q Consensus 30 ~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~---~l 106 (439)
++.+..+..+|++=-+..++-...+.+++|+++|... . .. ++...++++.+-+|..|++.-.+ .+
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~----~-------~~-~~~~~~~gl~lF~~~vG~~~Gp~F~~~l 85 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQH----F-------SI-NTDALNLGFMLFIFCVGVEAGPNFFSIF 85 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCC----C-------CC-ChHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3334444444544333344555668889999999531 1 11 22356788888889999988855 45
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHH--HHHHHhhhcccccHHHHHHHhcccC
Q 013653 107 FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIG--DYLAIGAIFAATDSVCTLQVLNQDE 172 (439)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~alllGails~Tdp~~v~~il~~~~ 172 (439)
|++..+...+++..++.. .++++....++ +++.. ..++=|+..++..-++.....++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~~ 146 (558)
T PRK04972 86 FRDGKNYLMLALVMVGSA-LVIALGLGKLF------GWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSG 146 (558)
T ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHHHHh------CCCHHHHHHHhhccccCcHHHHHHHHHHhccC
Confidence 555555555655544443 33333333444 55544 3444455444444444444444433
No 56
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=85.97 E-value=38 Score=34.45 Aligned_cols=119 Identities=10% Similarity=-0.072 Sum_probs=76.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHH
Q 013653 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~ 126 (439)
..+|.-+..++.|+++-...-...... ..+-.-+.+.++.+-+.+-.+=.+++..++.+++.+.+.+.+.+++++.+
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l 319 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMAL 319 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888776543232211 11112245677788788888888999999999999999999999888765
Q ss_pred HHHHHHHHHHhhcccCCCCHHHH----HHHhhhcccccHHH--HHHHhcccCCC
Q 013653 127 IISAGAVHFFKQMNIGTLKIGDY----LAIGAIFAATDSVC--TLQVLNQDETP 174 (439)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a----lllGails~Tdp~~--v~~il~~~~~~ 174 (439)
..-+..+-.+ +-++..| -..|--+.+|..+. .-++-++.|.+
T Consensus 320 ~~~fv~fr~m------g~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s 367 (398)
T TIGR00210 320 YAIFVTFRLM------GKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPS 367 (398)
T ss_pred HHHHHhHHhc------cchHHHHHHhcccccccccchHHHHHHHHHHHhccCCC
Confidence 5544444443 3343333 35666666665433 34556677754
No 57
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=84.59 E-value=21 Score=38.13 Aligned_cols=105 Identities=22% Similarity=0.157 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhhhhhcCChH---HHHHhHHHHHHHHHHHHHHHH
Q 013653 52 SITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKKK---QFFRNFMTIMLFGAVGTLISF 125 (439)
Q Consensus 52 ~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~g~~~~~~---~l~~~~~~~~~la~~~~~~~~ 125 (439)
..+.++.|+++|......+. ...+++ ..+.+++|.+-++..|++--.+ .+|++..+...++...++++.
T Consensus 418 ~~g~l~~gl~~g~~~~~~~~-----~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~ 492 (562)
T TIGR03802 418 GGGALISGLVFGWLRSKHPT-----FGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPL 492 (562)
T ss_pred hHHHHHHHHHHHHhcccCCc-----ceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44667888888864321211 112222 2467888888888888887744 567766777777766666655
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHhhhc-ccccHHHHHHHhc
Q 013653 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLN 169 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~alllGail-s~Tdp~~v~~il~ 169 (439)
++.....++++ +++.. ...|.+. +-|+|++.....+
T Consensus 493 ~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~ 529 (562)
T TIGR03802 493 IITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLE 529 (562)
T ss_pred HHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHH
Confidence 55555555555 66644 5667665 4455655544444
No 58
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=83.00 E-value=28 Score=33.92 Aligned_cols=128 Identities=16% Similarity=0.089 Sum_probs=73.4
Q ss_pred hhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH--HHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHH
Q 013653 44 EENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF--IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGT 121 (439)
Q Consensus 44 ~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~--~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~ 121 (439)
++.+|+|.. .+++=+++|...+-+-+......-.++...+. ...+...+|..|-++|.+...+..|+-..+-..=+
T Consensus 5 ~~i~kiPGG--~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~ 82 (314)
T PF03812_consen 5 KTIEKIPGG--MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKF 82 (314)
T ss_pred HhhccCCCc--eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHH
Confidence 445568853 33344455554443333221101122222221 23455568999999999999988888766655444
Q ss_pred HHHHHHHHHHHHHHHhhccc-CC-CCHHHHHHHhhhcccccHHHHHHHhcccCCC
Q 013653 122 LISFVIISAGAVHFFKQMNI-GT-LKIGDYLAIGAIFAATDSVCTLQVLNQDETP 174 (439)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~alllGails~Tdp~~v~~il~~~~~~ 174 (439)
.+ ..+.++....+++.-+. .| +--..++.+=+.++.+.+..-.++.+|.|.+
T Consensus 83 ~~-~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~ 136 (314)
T PF03812_consen 83 II-GALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE 136 (314)
T ss_pred HH-HHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence 44 44455555555532111 00 1112356666778899999999999999976
No 59
>PRK03818 putative transporter; Validated
Probab=78.79 E-value=22 Score=37.96 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccccccC---hhHHHHHhhHHHhhhhhhcCChHHHHH----hHHHHHHHHHHHHHHH
Q 013653 52 SITALIIGLCTGIVILLTTNGTSSHVLMFS---EDLFFIYLLPPIIFNAGFQVKKKQFFR----NFMTIMLFGAVGTLIS 124 (439)
Q Consensus 52 ~~~~il~Gil~G~~~~~~~~~~~~~~~~~~---~~~~~~i~L~~ilF~~g~~~~~~~l~~----~~~~~~~la~~~~~~~ 124 (439)
..+.++.|+++|......+. ....+ +..+.+++|.+-+...|++--...+.. +..+.+..+...++++
T Consensus 403 ~~G~L~~gl~~g~~~~~~~~-----~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGRIGSIGKL-----YWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHhccCCCCc-----eeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 45678899999964321111 01111 234678888888888888777554433 3555566666655555
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhccc-ccHHHHHHHh
Q 013653 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA-TDSVCTLQVL 168 (439)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~alllGails~-Tdp~~v~~il 168 (439)
.++.....++++ +.++. ...|++..+ |+|++.....
T Consensus 478 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 478 LLIVGILARMLA------KMNYL--TLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHHHHHH------cCCHH--HHHHHHhccCCCcHHHHHHh
Confidence 555444556665 66654 567777644 5565544443
No 60
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=78.32 E-value=40 Score=33.49 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHH
Q 013653 29 FVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFR 108 (439)
Q Consensus 29 ~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~ 108 (439)
+.++...+. .+....|+.|+|. +.++..+++|...+... + ...+ -|+....++-.++--..|.++|...+++
T Consensus 190 ~~~l~~~~~-~~g~l~~~lr~Pa--~~ll~~l~l~a~v~~~~-~---~~~~-lP~wl~~va~~~iG~~IG~~f~~~~l~~ 261 (352)
T COG3180 190 LLLLILAAL-LGGLLGKLLRFPA--PTLLGPLLLGAIVHFGG-G---ITIQ-LPAWLLAVAQALIGALIGSRFDRSILRE 261 (352)
T ss_pred HHHHHHHHH-HHHHHHHHHcCCc--HHHHHHHHHHHHhhccc-c---eeee-CCHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 333443444 4444445566774 44667777776543332 1 1122 3566777777777888899999888877
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 013653 109 NFMTI--MLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA 151 (439)
Q Consensus 109 ~~~~~--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~all 151 (439)
..+.. ..+.+++..+-+...+...+.+. +.|+..+++
T Consensus 262 ~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L 300 (352)
T COG3180 262 AKRLLPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL 300 (352)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 76653 23333343333444443444433 778877643
No 61
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=77.45 E-value=60 Score=30.16 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=22.2
Q ss_pred hhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHH
Q 013653 95 FNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVI 127 (439)
Q Consensus 95 F~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~ 127 (439)
|..-+.=+++.+||+|+++..-...|.......
T Consensus 75 lAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s 107 (230)
T COG1346 75 LAVPLYKQRHLIKRHWKPILAGVLVGSVVAIIS 107 (230)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444578999999999877666666554333
No 62
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=74.66 E-value=53 Score=32.61 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHh-----hhchhhHHHHHHHHHhhcc
Q 013653 254 VALMILMAYLSYMLAEL-----FYLSGILTVFFCGIVMSHY 289 (439)
Q Consensus 254 ~~~~l~~~~~~~~lae~-----lg~sgila~~~~Gl~~~~~ 289 (439)
..++..+++.++++++. .++++.+=+...|+.++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 34566677777777764 4788888889999999984
No 63
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=73.82 E-value=66 Score=32.83 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhh
Q 013653 17 SSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFN 96 (439)
Q Consensus 17 ~~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~ 96 (439)
+..+.+...+-.=.++-+....+|.++++...+|.....++.-.++- .....+.+..+-...-.+.+..-..+++++-
T Consensus 239 ~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K--~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvg 316 (414)
T PF03390_consen 239 KEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVK--AFGLVPESLEEGAKQWYKFFSKNLTWPLLVG 316 (414)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhc-CChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhccc
Q 013653 97 AGFQ-VKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA 158 (439)
Q Consensus 97 ~g~~-~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~ 158 (439)
.|.. +|++++.+.......+-+..+++.....+...-.++ ++...++-+-+....+
T Consensus 317 iGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~a 373 (414)
T PF03390_consen 317 IGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMA 373 (414)
T ss_pred HHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhccc
No 64
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=73.29 E-value=5.8 Score=36.77 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=63.4
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v 164 (439)
.....+-++.-..|++.+.|.+++....+..+.+....+.+-..+...++.. ..+|.++++.|.+.++..+...
T Consensus 159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP 232 (252)
T ss_pred hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence 5566777788999999999999999998888887777776666665666665 7899999999999999888766
Q ss_pred HHHhc
Q 013653 165 LQVLN 169 (439)
Q Consensus 165 ~~il~ 169 (439)
.+=..
T Consensus 233 r~~~~ 237 (252)
T KOG3826|consen 233 RPDYQ 237 (252)
T ss_pred cccch
Confidence 55443
No 65
>COG2855 Predicted membrane protein [Function unknown]
Probab=71.73 E-value=61 Score=31.98 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=55.1
Q ss_pred HHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCchHHHHHH
Q 013653 268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAI 347 (439)
Q Consensus 268 ae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (439)
.+..|+++..=+...|+.++++.++. ++.+.-++-..+. +.+. ==++.|++++..+..+. ....+ .
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~~~~--~~~~~GI~fs~k~---LLr~-gIvLlG~~ltl~~i~~~----G~~~v----~ 97 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILPQIP--AQTSAGITFSSKK---LLRL-GIVLLGFRLTLSDIADV----GGSGV----L 97 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccccch--hhhccchhhhHHH---HHHH-HHHHHcceeeHHHHHHc----CccHH----H
Confidence 34556778888888999999765432 1111111111111 2221 12556888743322111 11121 1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhcc
Q 013653 348 LLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 348 ~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
+....+..-++..+..-+ ..+.|+|.+..++.+- .-=..+.+.|..+
T Consensus 98 ~~~~~l~~t~~~~~~lg~---------~lgld~~~a~Lia~Gs-sICGasAiaA~~p 144 (334)
T COG2855 98 IIAITLSSTFLFAYFLGK---------LLGLDKKLALLIAAGS-SICGASAIAATAP 144 (334)
T ss_pred HHHHHHHHHHHHHHHHHH---------HhCCCHHHHHHHHccc-hhhHHHHHHHhCC
Confidence 222222222222222221 2388999999999866 3444555666554
No 66
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=71.27 E-value=66 Score=27.62 Aligned_cols=107 Identities=10% Similarity=-0.040 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhH-HHHHhhHHHhhhhhhcCChHH
Q 013653 27 NLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL-FFIYLLPPIIFNAGFQVKKKQ 105 (439)
Q Consensus 27 ~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~ilF~~g~~~~~~~ 105 (439)
+..+.+++....+|+.+.+...+|-+.. ++|+++=..++......... .+-..+. +.+..+-++=-..|.=-.++.
T Consensus 10 l~ql~ill~~~~lGe~i~~ll~lPiPGs--ViGMlLL~l~L~~~~vk~~~-v~~~a~~LL~~m~LfFVPagVGim~~~~l 86 (141)
T PRK04125 10 LHQAFIFAAIMLISNIIASFLPIPMPAS--VIGLVLLFVLLCTKVVKLEQ-VESLGTALTNNIGFLFVPSGISVINSLGV 86 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHHHHHHHhhhHhHHHHhHHH
Confidence 3334455566667888887554553332 23433322222222211111 1111121 223332222223445556788
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136 (439)
Q Consensus 106 l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 136 (439)
+++++.+++..-+++++++....+....++.
T Consensus 87 l~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 87 MSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888777887777666666655543
No 67
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=70.42 E-value=22 Score=34.66 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=41.7
Q ss_pred hhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh
Q 013653 89 LLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG 153 (439)
Q Consensus 89 ~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG 153 (439)
.+|+..|.-|.++|++++.+...+.+.+++..+..+.....+.- -++ +.+-..+.+.|
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~-rll------g~~~~~g~li~ 254 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD-RLV------GGTGIAGAAAS 254 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHh------CCChhHHHHHH
Confidence 67777888999999999999999998888776666543332222 222 56666677777
No 68
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=67.90 E-value=1.1e+02 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=19.1
Q ss_pred hcCChHHHHHhHHHHHHHHHHHHHHHH
Q 013653 99 FQVKKKQFFRNFMTIMLFGAVGTLISF 125 (439)
Q Consensus 99 ~~~~~~~l~~~~~~~~~la~~~~~~~~ 125 (439)
+.=+++.+||++++++.-...|...+.
T Consensus 76 LY~~~~~lk~~~~~Il~~~~~G~~~~~ 102 (226)
T TIGR00659 76 LYKQLPQIKKYWKEIILNVAVGSVIAI 102 (226)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999988776666655543
No 69
>COG2985 Predicted permease [General function prediction only]
Probab=65.95 E-value=52 Score=34.10 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=57.6
Q ss_pred HHHHHhhHHHhhhhhhcCChH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--HHHHHHHhhhccc
Q 013653 84 LFFIYLLPPIIFNAGFQVKKK---QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK--IGDYLAIGAIFAA 158 (439)
Q Consensus 84 ~~~~i~L~~ilF~~g~~~~~~---~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~alllGails~ 158 (439)
.-+++++.+-+|..|++.-+. .+||..++-..++... +++....+...+.++ ++| .....+=||..+.
T Consensus 59 l~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~------~~~~~~~~Gm~sGAlTsT 131 (544)
T COG2985 59 LHFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLF------GIDLGLIAGMFSGALTST 131 (544)
T ss_pred hhhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhc------CCCHHHhhhhhcccccCC
Confidence 345888888899999998854 6677777766666554 333444444444443 444 4456677788888
Q ss_pred ccHHHHHHHhcccCCC
Q 013653 159 TDSVCTLQVLNQDETP 174 (439)
Q Consensus 159 Tdp~~v~~il~~~~~~ 174 (439)
..-++....+++.+.+
T Consensus 132 P~L~aa~~~L~~lg~~ 147 (544)
T COG2985 132 PGLGAAQDILRELGAP 147 (544)
T ss_pred chhHHHHHHHHhhccc
Confidence 8888889999988865
No 70
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=64.64 E-value=1e+02 Score=30.13 Aligned_cols=126 Identities=16% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHH----hhhchhhHHHHHHHHHhhc-cccccCCchhhHHHHhHHHHHH-HHHHHHHHHHhhcchhhh
Q 013653 255 ALMILMAYLSYMLAE----LFYLSGILTVFFCGIVMSH-YTWHNVTESSRVTTKHAFATLS-FVAEIFIFLYVGMDALDI 328 (439)
Q Consensus 255 ~~~l~~~~~~~~lae----~lg~sgila~~~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Fv~iG~~~~~~ 328 (439)
.++..++..++++++ .-++++.+=+.+.|+.++| ....+ +.. +.-.+..+ .+.+.- =++.|.++.-.
T Consensus 4 ~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~--~~~----~~Gi~~~~k~~Lr~g-IVLlG~~l~~~ 76 (305)
T PF03601_consen 4 LLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLP--ARF----KPGIKFSSKKLLRLG-IVLLGFRLSFS 76 (305)
T ss_pred HHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCc--HHH----HhHHHHHHHHHHHHH-HHHHCccccHH
Confidence 456777888888887 3588999999999999998 33211 111 11111111 122222 25668886433
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhcc
Q 013653 329 EKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
+..+. .++..... ...+. .......++.+ |..|.+.|.+..++.+- .--.++.+.|...
T Consensus 77 ~i~~~----G~~~~~~~----~~~v~---~~~~~~~~lg~-----r~~~l~~~~~~Lia~Gt-sICG~SAi~A~a~ 135 (305)
T PF03601_consen 77 DILAL----GWKGLLII----IIVVI---LTFLLTYWLGR-----RLFGLDRKLAILIAAGT-SICGASAIAATAP 135 (305)
T ss_pred HHHHh----CccHHHHH----HHHHH---HHHHHHHHHHH-----HHhCCCHHHHHHHHhhc-ccchHHHHHHHcc
Confidence 21111 11111111 11111 11111112220 12478888899998877 5677777777654
No 71
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=63.71 E-value=1.6e+02 Score=29.24 Aligned_cols=78 Identities=10% Similarity=0.027 Sum_probs=50.2
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh---hhcccc
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAAT 159 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG---ails~T 159 (439)
+.+.++++ -.-|.+++.+++.+...+.+......+..+.........-.+ +.+...++++| ++..++
T Consensus 65 k~lLr~gI----VLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l------~l~~~~~~Lia~GtsICGaS 134 (335)
T TIGR00698 65 PFLLRIGI----TLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRL------KLDKQMSILLGAGSSICGAA 134 (335)
T ss_pred HHHHHHHH----HHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChhHHHHHHcchhHHHHH
Confidence 34556555 446899999999999998877766555444333222221122 77888888887 455666
Q ss_pred cHHHHHHHhcc
Q 013653 160 DSVCTLQVLNQ 170 (439)
Q Consensus 160 dp~~v~~il~~ 170 (439)
..+++.++.|.
T Consensus 135 Ai~A~a~~i~A 145 (335)
T TIGR00698 135 AVAAIEPVIKA 145 (335)
T ss_pred HHHHhccccCC
Confidence 66666667753
No 72
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=63.38 E-value=95 Score=27.06 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChH---HHHHhH-HHHHHHHHHHHHHHHHH
Q 013653 52 SITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QFFRNF-MTIMLFGAVGTLISFVI 127 (439)
Q Consensus 52 ~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~---~l~~~~-~~~~~la~~~~~~~~~~ 127 (439)
..+.++.|+++|......+... ....-.++.+.+++|.+-++..|++.-.+ .+|++. ...+..+...++++..+
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~--~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~ 101 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTW--YIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL 101 (154)
T ss_pred cHHHHHHHHHHHhccccCCcce--ecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 5677899999996421111100 00011234577889988889999988755 445543 12333334444444445
Q ss_pred HHHHHHHHHhhcccCCCCHHHHHHHhhhc-ccccHHHHHHHh
Q 013653 128 ISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVL 168 (439)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~alllGail-s~Tdp~~v~~il 168 (439)
..+..++++ +.+. ....|.+- +-|+|++.-...
T Consensus 102 ~~~~~~~~~------~~~~--~~~~G~~aGa~T~tpaL~aa~ 135 (154)
T TIGR01625 102 VAVALIKLL------RINY--ALTAGMLAGATTNTPALDAAN 135 (154)
T ss_pred HHHHHHHHh------CCCH--HHHHHHHhccccChHHHHHHH
Confidence 555555555 5664 35566655 334444443333
No 73
>PRK05326 potassium/proton antiporter; Reviewed
Probab=60.85 E-value=61 Score=34.59 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=18.0
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTI 113 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~ 113 (439)
+..+..++..+..|+.+|++.+.+.....
T Consensus 275 l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~ 303 (562)
T PRK05326 275 LAWLAQIGMFLVLGLLVTPSRLLDIALPA 303 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555666666677777777766554443
No 74
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=59.76 E-value=1.3e+02 Score=27.87 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=19.8
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013653 101 VKKKQFFRNFMTIMLFGAVGTLISFVII 128 (439)
Q Consensus 101 ~~~~~l~~~~~~~~~la~~~~~~~~~~~ 128 (439)
=+++.+|||+++++.-...|.+.+.+..
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~ 95 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSA 95 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999988777667766544433
No 75
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=58.96 E-value=1.9e+02 Score=29.10 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhh
Q 013653 18 SDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNA 97 (439)
Q Consensus 18 ~~~~~~~~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~ 97 (439)
++..+...+-.=.++-+.....|+++.|...+|.....+++=..+=-.....|+.......+. .+.+..=..-++|+..
T Consensus 258 ~~k~d~~~~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l-~~F~sk~~t~~Lm~gi 336 (438)
T COG3493 258 EGKLDLKLMGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQL-SQFFSKNLTWPLMAGI 336 (438)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHHHHhhHHHHHHhh
Q ss_pred hhc-CChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-------------hhccccc
Q 013653 98 GFQ-VKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-------------AIFAATD 160 (439)
Q Consensus 98 g~~-~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllG-------------ails~Td 160 (439)
|.. .|++++-+.......+-+.++++.....+.....++ ++...++-+-+ +++|+.|
T Consensus 337 Gv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~------~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~ 407 (438)
T COG3493 337 GVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLM------GFYPVEAAITAGLCMANMGGTGDVAVLSAAD 407 (438)
T ss_pred hhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHhHHhcCCCCCCchHHhhhcc
No 76
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=58.59 E-value=2e+02 Score=28.77 Aligned_cols=108 Identities=9% Similarity=0.117 Sum_probs=57.2
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhc-CChHHHHHhH-HHHH
Q 013653 37 IVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-VKKKQFFRNF-MTIM 114 (439)
Q Consensus 37 ~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~-~~~~~l~~~~-~~~~ 114 (439)
..+|.+++....+|..+..++.+.++-.. ...++..... .....+.+..-...+++.-.|+. .|++++-+.. .+.+
T Consensus 192 y~~g~l~~~~~~Ih~~v~mII~~vi~k~~-gllp~~i~~~-a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~v 269 (347)
T TIGR00783 192 FMAGGLLKSFPGIPAYAFMILIAAALKAF-GLVPKEIEEG-AKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFV 269 (347)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHh-CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHh
Confidence 34555555433578888888777776532 1111111000 00011234555677777777886 8999999988 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHHh
Q 013653 115 LFGAVGTLISFVIISAGAVHFFKQMNIGT-LKIGDYLAIG 153 (439)
Q Consensus 115 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~alllG 153 (439)
.+.+.++ +...+.+...-.++ + +|...|+.=|
T Consensus 270 viiv~~V-lg~ii~s~lvGKll------G~YPiE~aItag 302 (347)
T TIGR00783 270 VICLSVV-VAMILGGAFLGKLM------GMYPVESAITAG 302 (347)
T ss_pred hhHHHHH-HHHHHHHHHHHHHh------CCChHHHHHHHh
Confidence 5544443 33333443333333 4 4555555545
No 77
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=58.03 E-value=1.6e+02 Score=28.80 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=74.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHH---hhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHH
Q 013653 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIY---LLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLI 123 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i---~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~ 123 (439)
+|+|... +++=+++|...+-+-++. .+.-.+++..+.+- .+...+|..|-++|.|.-.+..++...+-..=+.+
T Consensus 8 ~kiPgg~--m~vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~ 84 (312)
T PRK12460 8 KKIPGGM--MVVPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGV 84 (312)
T ss_pred ccCCCce--eHHHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHH
Confidence 5688643 223334444333232221 12223444444322 34445799999999998777776655554333333
Q ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccCCC-cchheeeehhhhhhHHHHHHH
Q 013653 124 SFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVNDATSVVLF 195 (439)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~~~-~l~~~l~ges~~nD~~aiilf 195 (439)
..+++.....+++. +|+--...+.+=+..+.+....-.++..|.|.+ +.. ..+-..+||+=-+.+.
T Consensus 85 -~~~~g~~~~~~~g~---~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~g--A~~~~sl~~GPf~tm~ 151 (312)
T PRK12460 85 -AIVIGLLVGKFFGA---EGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVG--AISILSLNDGPFFTML 151 (312)
T ss_pred -HHHHHHHHHHHcCc---ccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhh--HHhhhhhccCcHHHHH
Confidence 33344444444432 133223345555667788889999999999976 332 1223456776444433
No 78
>PRK01658 holin-like protein; Validated
Probab=56.08 E-value=1.2e+02 Score=25.33 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhH-HHHHhhHHHhhhhhhcCChHHHHH
Q 013653 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL-FFIYLLPPIIFNAGFQVKKKQFFR 108 (439)
Q Consensus 30 ~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~ilF~~g~~~~~~~l~~ 108 (439)
..+++.....|+.+.+...+|-+.. ++|+++=..++.......+. .+...+. ..+..+-++=-..|.=-.++.+++
T Consensus 10 l~il~~~~~~G~~i~~~l~lpiPGs--ViGmlLL~~~L~~~~ik~~~-v~~~a~~Ll~~m~llFVPa~VGi~~~~~ll~~ 86 (122)
T PRK01658 10 IALLYVFALVGTWIQEQLHLPIPGS--IIGIFLLLLLLSFKILKLKW-IELGAETLLAELPLFFIPSAVGVMNYGDFLSS 86 (122)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Confidence 4445555667888887554543332 24433322222222222111 1111121 223333222223455556789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 109 NFMTIMLFGAVGTLISFVIISAGAVHFF 136 (439)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~~~~~~~~~ 136 (439)
++.++....+.+++++....|....++.
T Consensus 87 ~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 87 KGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888887777776665543
No 79
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=55.78 E-value=1.5e+02 Score=30.72 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=14.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhh
Q 013653 47 RWMNESITALIIGLCTGIVILLT 69 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~ 69 (439)
+|+|-.+...+.|++.|.+...+
T Consensus 283 ~R~~wL~v~~~~~~~t~~ii~~f 305 (449)
T TIGR00400 283 NRIIWLLVLLVSSTFTATIISNY 305 (449)
T ss_pred hccchHHHHHHHHHHHHHHHHHH
Confidence 44777777777777776655433
No 80
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=55.62 E-value=95 Score=30.33 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHH
Q 013653 37 IVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLF 116 (439)
Q Consensus 37 ~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~l 116 (439)
......++|..+-|..... +.|+++.......|+. ..-.-+.+.+...|..++..|..++.+..++.++.....
T Consensus 170 ~~~~~~~~~~~~nP~iia~-i~Gl~~~~~~i~lP~~-----l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~ 243 (321)
T TIGR00946 170 LMLIFVWKKLIKFPPLWAP-LLSVILSLVGFKMPGL-----ILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILA 243 (321)
T ss_pred HHHHHHHHHHHhCCChHHH-HHHHHHHHHhhcCcHH-----HHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhccc
Q 013653 117 GAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD 171 (439)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~ 171 (439)
...=.++...+.......+ +.+ ....-...+.++.=|+....++.++
T Consensus 244 ~~~klil~P~i~~~~~~~~-------~l~-~~~~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 244 LIVRFLVQPAVMAGISKLI-------GLR-GLELSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHHHHHHHHHHHHh-------CCC-hHHHHHHHHHHcCChhhHHHHHHHH
No 81
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=54.52 E-value=1.9e+02 Score=32.26 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhh
Q 013653 256 LMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (439)
Q Consensus 256 ~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~ 328 (439)
+.+...+++.+++|.+.++..+-.+++|++++.......++..--..+.....++.+.-.+.-.-.|..++..
T Consensus 21 ~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~ 93 (810)
T TIGR00844 21 FSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK 93 (810)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3456677777888888888888888888888865332222211000011122244455555555567776443
No 82
>PRK10711 hypothetical protein; Provisional
Probab=53.89 E-value=1.7e+02 Score=27.34 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHH-HhhhhhhcCChHHHHHhHHHH
Q 013653 35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPP-IIFNAGFQVKKKQFFRNFMTI 113 (439)
Q Consensus 35 ~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~-ilF~~g~~~~~~~l~~~~~~~ 113 (439)
....++..+.||.+-|-.-+.++.-+++-.++. ..+ .+++......+.+..+.=|. .-+.--+.=+++.+||+++++
T Consensus 14 ~~y~~~~~l~~k~~~~~l~Pll~s~~~ii~~L~-~~~-i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~lk~~~~~I 91 (231)
T PRK10711 14 IVFFAARKLAARFKFPLLNPLLVAMVVIIPFLL-LTG-IPYEHYFKGSEVLNDLLQPAVVALAFPLYEQLHQIRARWKSI 91 (231)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHH-HhC-CCHHHHHhccHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333456666665556554444333222222222 211 22222222333332221111 123333445688999999988
Q ss_pred HHHHHHHHHHH
Q 013653 114 MLFGAVGTLIS 124 (439)
Q Consensus 114 ~~la~~~~~~~ 124 (439)
+.--..|.+.+
T Consensus 92 ~~~~~vG~~v~ 102 (231)
T PRK10711 92 ISICFIGSVVA 102 (231)
T ss_pred HHHHHHHHHHH
Confidence 76656665553
No 83
>PRK01821 hypothetical protein; Provisional
Probab=51.11 E-value=1.5e+02 Score=25.11 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhH-HHHHhhHHHhhhhhhcCChHHHHH
Q 013653 30 VALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL-FFIYLLPPIIFNAGFQVKKKQFFR 108 (439)
Q Consensus 30 ~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~ilF~~g~~~~~~~l~~ 108 (439)
+++++.....|+...+...+|-+.. ++|+++=..++.......+. .+...+. +.+..+-++==..|.=-.++.+++
T Consensus 15 l~ill~~~~~Ge~i~~~l~lpiPGs--ViGmlLLf~~L~~~~vk~~~-v~~~a~~LL~~m~LfFVPa~VGim~~~~ll~~ 91 (133)
T PRK01821 15 FVLIYACLYAGIFIASLLPITIPGS--IIGMLILFVLLALQILPAKW-VKPGCSLLIRYMALLFVPIGVGVMQYYDLLRA 91 (133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455567888877554443322 24433322222222211111 1111121 223333222223344445778899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 109 NFMTIMLFGAVGTLISFVIISAGAVHF 135 (439)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~~~~~~~~ 135 (439)
++.++...-+.+++++....|....++
T Consensus 92 ~~~~il~~ivvST~lvl~vtg~~~~~l 118 (133)
T PRK01821 92 QFGPIVVSCIVSTLVVLLVVGWSSHYV 118 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887777777777766666655544
No 84
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=50.00 E-value=83 Score=22.64 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q 013653 25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVI 66 (439)
Q Consensus 25 ~i~~~~~ll~~~~~~~~~~~~~~~iP~~~~~il~Gil~G~~~ 66 (439)
.+....++..+...+|+-+-| .|+|.+...++.|+++..+.
T Consensus 16 aFa~vG~~m~~S~~lS~~LT~-GrihGSAIAI~lGLvLAy~G 56 (60)
T PF03818_consen 16 AFAVVGIIMWVSYWLSKKLTR-GRIHGSAIAIVLGLVLAYIG 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHc
Confidence 444445555444444444444 57999999999999988643
No 85
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=48.09 E-value=3.1e+02 Score=27.79 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=78.8
Q ss_pred HHHHHHHhh-ccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHH
Q 013653 37 IVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIML 115 (439)
Q Consensus 37 ~~~~~~~~~-~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~ 115 (439)
..+.+++++ ...+|.-+..+.+|+++=-....... +...+-.-+.+.+..|.+.+=.+=.++++-++-+.+-+.+.
T Consensus 235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~---~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~v 311 (404)
T COG0786 235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKK---YRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLV 311 (404)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcc---ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 333444443 34688888888888776543322211 11111112457777777777777778888888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH----Hhhhccccc--HHHHHHHhcccCCC-c--chheeeehhhh
Q 013653 116 FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA----IGAIFAATD--SVCTLQVLNQDETP-L--LYSLVFGEGVV 186 (439)
Q Consensus 116 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~all----lGails~Td--p~~v~~il~~~~~~-~--l~~~l~ges~~ 186 (439)
+-...++...+...+..+-++ |-++..+.+ .|--+.+|- -+-..++-++.|.+ + +..=+.| +.+
T Consensus 312 iL~vQ~i~m~lfa~fvtfr~m------G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~kAf~ivPiVG-Aff 384 (404)
T COG0786 312 ILAVQTIVMALFAIFVTFRLM------GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHKAFIVVPIVG-AFF 384 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCceeeEEeehHH-HHH
Confidence 666665554433333333222 445555544 344444443 33333334455654 3 2222455 777
Q ss_pred hhHHHHHH
Q 013653 187 NDATSVVL 194 (439)
Q Consensus 187 nD~~aiil 194 (439)
-|.+....
T Consensus 385 id~ina~i 392 (404)
T COG0786 385 IDIINALI 392 (404)
T ss_pred HHHHHHHH
Confidence 77766433
No 86
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=47.23 E-value=2.5e+02 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhh
Q 013653 262 YLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI 328 (439)
Q Consensus 262 ~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~ 328 (439)
...-.+++.++.+.+++-..+|+.++.......+++ +..+.++.+.-.++....|.+++..
T Consensus 5 ~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~ 65 (273)
T TIGR00932 5 VLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDLE 65 (273)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 344567788899999999999999986432211111 2355566677777778889998553
No 87
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=45.55 E-value=79 Score=31.81 Aligned_cols=109 Identities=12% Similarity=0.034 Sum_probs=66.4
Q ss_pred HhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHH
Q 013653 88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV 167 (439)
Q Consensus 88 i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~i 167 (439)
.++-..++.-|.+.|++.+++..++-..++. |++....+-....+.+.... .+|...+ ..+...+...|.-....
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l-G~v~q~~i~pl~~f~~~~~~---~lP~~~~-ag~~Lvtc~~p~g~~~~ 191 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL-GFVPQYLIMPLLGFLLSKVL---LLPAALA-AGLLLVTCVSPGGGGNY 191 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceee-hHHHHHHHHHHHHHhhhhHh---hCCcccc-ceeEEEEeccCCcchhh
Confidence 4556678899999999999998877554443 22222222222222222111 3333333 56777788888888888
Q ss_pred hcccCCCcchheeeehhhhhhHHHHHHHHHHHHh
Q 013653 168 LNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSF 201 (439)
Q Consensus 168 l~~~~~~~l~~~l~ges~~nD~~aiilf~~~~~~ 201 (439)
+..+..+.-..+...++..+.+.++++.=.....
T Consensus 192 ~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~ 225 (371)
T KOG2718|consen 192 LTSKRLPGDVTLSILMTTISTVLAVILTPLLSIL 225 (371)
T ss_pred heeecCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8766655445566667778887777765544333
No 88
>COG3329 Predicted permease [General function prediction only]
Probab=43.96 E-value=95 Score=30.24 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHhhccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCC--hHHHHHhHHHHHHHHH
Q 013653 41 HLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK--KKQFFRNFMTIMLFGA 118 (439)
Q Consensus 41 ~~~~~~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~--~~~l~~~~~~~~~la~ 118 (439)
+++++.. +......++.|+++|.+..- ...+..+---+-.+.-.|++.+.+-|++-. .+++||........++
T Consensus 209 ell~Esf-lnpal~lllggl~iGlitGe----~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fgl 283 (372)
T COG3329 209 ELLQESF-LNPALVLLLGGLAIGLITGE----QGESVLKPFFDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFGL 283 (372)
T ss_pred HHHHHHH-cCchHHHHHHHHHHhheecc----CchhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHHH
Confidence 4444433 44566677889999954311 111111111122566778888888888754 3456655444333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHHHHHHhcccC---CC--cchheeeehhhhhhHHHHH
Q 013653 119 VGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE---TP--LLYSLVFGEGVVNDATSVV 193 (439)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~v~~il~~~~---~~--~l~~~l~ges~~nD~~aii 193 (439)
+.=++.. .+++....+. ++-. |++.....+++.+.++.|=.++-+.+|-.- +| .++.-+-----+|=.+++.
T Consensus 284 laPil~g-~ig~~lg~~a-~y~t-gfs~g~~vllAVlaaSaSyIa~PaalR~~iPeAnPs~yl~~Slgvtfpfni~igIP 360 (372)
T COG3329 284 LAPILHG-FIGLLLGMIA-GYPT-GFSDGGVVLLAVLAASASYIAVPAALRLAIPEANPSLYLGASLGVTFPFNITIGIP 360 (372)
T ss_pred HHHHHHH-HHHHHHHHHh-cccc-cCCCcchHHHHHHhcchhhccccHHHhccCCCCCCcceeehhhccccceeeeechH
Confidence 2222211 1122211111 1110 444445778888777766666666665321 11 1222222223367777777
Q ss_pred HHH
Q 013653 194 LFN 196 (439)
Q Consensus 194 lf~ 196 (439)
+|.
T Consensus 361 Lyi 363 (372)
T COG3329 361 LYI 363 (372)
T ss_pred HHH
Confidence 774
No 89
>COG2985 Predicted permease [General function prediction only]
Probab=37.34 E-value=2.1e+02 Score=29.92 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=71.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhh-----ccccchhHHHHHHHHHHHHHHHhhcCCCCccccccChh---HHHHHhhH
Q 013653 20 HKSVVSMNLFVALLCACIVIGHLLEE-----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSED---LFFIYLLP 91 (439)
Q Consensus 20 ~~~~~~i~~~~~ll~~~~~~~~~~~~-----~~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~---~~~~i~L~ 91 (439)
+....+++-+.+-+..+.++|.+=.- ..++-...+.++.++++|.+....+ ..+.+++. -+.++++
T Consensus 361 ~lq~~~lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iGp-----l~w~mP~~An~~lrelGl- 434 (544)
T COG2985 361 KLQQVDLLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIGP-----LTWFMPPGALLALRELGL- 434 (544)
T ss_pred eeeeeccHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccCc-----eEEEcChhHHHHHHHHHH-
Confidence 33344455555545555555543110 0112234566888999986432111 11233332 2344444
Q ss_pred HHhhhhhhcCC-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhc-ccccHHHHH
Q 013653 92 PIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTL 165 (439)
Q Consensus 92 ~ilF~~g~~~~-----~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGail-s~Tdp~~v~ 165 (439)
.+|.+|..++ .+.+-...-+....+.+-.+++...+++..++++ +.+| ..+.|++. +-|||.+.
T Consensus 435 -~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~------kmn~--~~l~G~laGs~T~ppaL- 504 (544)
T COG2985 435 -ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL------KMNW--LLLCGALAGSMTDPPAL- 504 (544)
T ss_pred -HHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH------hccH--HHHhhHHhcCCCChHHH-
Confidence 3455555555 2334455556666676666777777777777776 5565 45667766 45777764
Q ss_pred HHhccc
Q 013653 166 QVLNQD 171 (439)
Q Consensus 166 ~il~~~ 171 (439)
+..++.
T Consensus 505 a~and~ 510 (544)
T COG2985 505 AFANDA 510 (544)
T ss_pred HHHhhc
Confidence 444443
No 90
>COG0679 Predicted permeases [General function prediction only]
Probab=36.23 E-value=4.2e+02 Score=25.81 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=62.2
Q ss_pred chhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHHHHHHHHHHHHHhhcchhhh-hhhhhccCCCCchHHHHHHHHHH
Q 013653 273 LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI-EKWRVVRDSPGKSVGVSAILLGL 351 (439)
Q Consensus 273 ~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Fv~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 351 (439)
-++.+=+.+.|+..+....+. .+..++..+.++....++-.+.+|+.+... .++. ...........
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~l-----P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~--------~~~~~~~~~~~ 233 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISL-----PAPLDTAVDLLASAASPLALIALGLSLAFLKLKGS--------KPPIILIALSL 233 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccc--------cchhHHHHHHH
Confidence 566677777888887543221 125677788888899999999999998552 1111 11111111111
Q ss_pred HHHHHHHHHHHhHHHhhhhhccCCCCCChhhhhhhhccCCCccHHHHHhhhc
Q 013653 352 VLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYK 403 (439)
Q Consensus 352 ~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpRG~v~l~lA~~ 403 (439)
-++.-++..+...++.+ -...+++..++.-+. |.+..+..+|..
T Consensus 234 kll~~Pl~~~~~~~~~~-------l~~~~~~v~vl~~a~-P~A~~~~v~a~~ 277 (311)
T COG0679 234 KLLLAPLVALLVAKLLG-------LSGLALQVLVLLSAM-PTAVNAYVLARQ 277 (311)
T ss_pred HHHHHHHHHHHHHHHcC-------CChHHHHHHHHHhhC-cHHhHHHHHHHH
Confidence 12333343444333332 233344444444466 999999999976
No 91
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=35.97 E-value=1.8e+02 Score=28.39 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHH
Q 013653 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (439)
Q Consensus 87 ~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~ 125 (439)
.+..|+.-|.-|-.+|++.+.|..-+-..+++..++++.
T Consensus 200 ~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG 238 (314)
T TIGR00793 200 QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTG 238 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 456778889999999999999888777777776665544
No 92
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=35.86 E-value=1.1e+02 Score=34.17 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccHHH
Q 013653 84 LFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC 163 (439)
Q Consensus 84 ~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp~~ 163 (439)
...++++|+-.-..|++.|...+.+......... ..... -++.+....++. +.|+..++.+|.+++.-.-..
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~-~~~~~-K~l~t~~~sl~~------k~p~~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINKWGALIRTIL-IFGAV-KLLSTLGTSLYC------KLPLRDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHh------cCchhHHHHHHHHHHhhhHHH
Confidence 4567899999999999999999988322222222 22222 233333333333 889999999998887665443
No 93
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=35.49 E-value=1.2e+02 Score=29.57 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHH
Q 013653 87 IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125 (439)
Q Consensus 87 ~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~ 125 (439)
...+|+.-|.-|..+|++.+.+..-+-..+++..++++.
T Consensus 200 ~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg 238 (314)
T PF03812_consen 200 PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTG 238 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 556788889999999999999988888888776655543
No 94
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=33.79 E-value=22 Score=35.61 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=9.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhhhhhcCChHHH---HHhHHHHHHHHHHHHH
Q 013653 47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKKKQF---FRNFMTIMLFGAVGTL 122 (439)
Q Consensus 47 ~~iP~~~~~il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~~g~~~~~~~l---~~~~~~~~~la~~~~~ 122 (439)
.+.+..++..+.|+++.. ... .. ...+. -+.+. .++.|......|.++|.+.+ .+.......+.+...+
T Consensus 232 ~g~s~~l~af~~Gl~~~~----~~~-~~-~~~~~-l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~ 304 (380)
T PF00999_consen 232 LGLSGILGAFIAGLILSN----SPF-AE-RLEEK-LESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILL 304 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeeeehcccc----ccc-cc-hhhhc-ccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHH
Confidence 446777777777777761 111 11 11111 11233 77888888899999999888 4444444333333322
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhcccccH
Q 013653 123 ISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDS 161 (439)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~alllGails~Tdp 161 (439)
.-........ ... +.++.++...|....+-..
T Consensus 305 ~k~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~g~ 336 (380)
T PF00999_consen 305 GKFIGVYLAS-RLF------GIPWKEALFIGLGMLPRGE 336 (380)
T ss_dssp -------------------------HHHHTTTTSS--HH
T ss_pred hhhceeehhh-hhc------ccccchhHHHHHhhcCccH
Confidence 3222221111 111 7788899999977775443
No 95
>COG0679 Predicted permeases [General function prediction only]
Probab=31.88 E-value=4.9e+02 Score=25.31 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHH
Q 013653 56 LIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAV 119 (439)
Q Consensus 56 il~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~ 119 (439)
.+.+.++|.......-..+.. .+..-+.+.....|..++..|.+++.+..++...+....+..
T Consensus 170 ~i~a~i~g~~~~~~~i~lP~~-~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~ 232 (311)
T COG0679 170 LIIALILGLLLNLLGISLPAP-LDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALS 232 (311)
T ss_pred HHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHH
Confidence 445556665544333222221 222235678999999999999999998788877766555544
No 96
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=31.03 E-value=3e+02 Score=24.85 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=18.9
Q ss_pred eeeehhhhhhHHHHHHH-HHHHHhhhc
Q 013653 179 LVFGEGVVNDATSVVLF-NAIQSFDLS 204 (439)
Q Consensus 179 ~l~ges~~nD~~aiilf-~~~~~~~~~ 204 (439)
.+.-.+.+-|+.+...+ ..+.+..+|
T Consensus 6 lLtf~aG~iDa~~fl~~~~~F~s~~TG 32 (209)
T PF06912_consen 6 LLTFIAGFIDAYSFLALGGVFVSFMTG 32 (209)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHhHH
Confidence 44556788999999998 566665544
No 97
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=28.50 E-value=3.3e+02 Score=22.25 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=6.6
Q ss_pred HHHHHHHHhhccc
Q 013653 278 TVFFCGIVMSHYT 290 (439)
Q Consensus 278 a~~~~Gl~~~~~~ 290 (439)
.++..|+...+..
T Consensus 32 i~~~~g~~~~~~~ 44 (111)
T PF09946_consen 32 IVFLAGILLVYLY 44 (111)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555543
No 98
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=26.71 E-value=5.4e+02 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=20.1
Q ss_pred hcCChHHHHHhHHHHHHHHHHHHHHHHH
Q 013653 99 FQVKKKQFFRNFMTIMLFGAVGTLISFV 126 (439)
Q Consensus 99 ~~~~~~~l~~~~~~~~~la~~~~~~~~~ 126 (439)
+.=+++.+||++++++.-...|...+.+
T Consensus 82 LY~q~~~lk~~~~~Il~~~~vG~~~~i~ 109 (232)
T PRK04288 82 LYKKRDVLKKYWWQILGGIVVGSVCSVL 109 (232)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999987766666665443
No 99
>PF15179 Myc_target_1: Myc target protein 1
Probab=24.16 E-value=1.5e+02 Score=26.53 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 217 SFFYLFIASTMLGVIAGLLSAFIIKKLY 244 (439)
Q Consensus 217 ~~l~~~~~~~~iG~~~G~~~~~~~~~~~ 244 (439)
..+..+..+.++|+++|-++..++.++.
T Consensus 20 ~lIlaF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 20 DLILAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777766666665553
No 100
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=22.30 E-value=4e+02 Score=21.09 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=28.5
Q ss_pred HHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013653 86 FIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS 129 (439)
Q Consensus 86 ~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~ 129 (439)
.+..+-++=-..|.=-..+.+++++.+++..-+.+++++....+
T Consensus 49 ~~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg 92 (96)
T PF03788_consen 49 KNMALFFVPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTG 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333344555566788999999988877777776655544
No 101
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=21.81 E-value=6.3e+02 Score=24.76 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=54.7
Q ss_pred hHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C-CCHHHHHHHhhhcccccHHHHHHH
Q 013653 90 LPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIG-T-LKIGDYLAIGAIFAATDSVCTLQV 167 (439)
Q Consensus 90 L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~alllGails~Tdp~~v~~i 167 (439)
+...+|..|-++|.|.-.+..++...+-..=+.+ ..+++.....+++.-+.. | +--...+.+=+..+.+....-.++
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i-~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAV-AWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHH-HHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 4445799999999998777766654443323223 333444444444321100 0 111234444466777888888899
Q ss_pred hcccCCC-cchheeeehhhhhhHH
Q 013653 168 LNQDETP-LLYSLVFGEGVVNDAT 190 (439)
Q Consensus 168 l~~~~~~-~l~~~l~ges~~nD~~ 190 (439)
..|.|.+ +..- .+-..+||+=
T Consensus 130 ~~qyGd~~D~gA--~~i~sl~~GP 151 (314)
T TIGR00793 130 MQQYGTKEEAGA--FVLMSLESGP 151 (314)
T ss_pred HHHcCCHhhhhh--hhhhhhccCc
Confidence 9999876 3321 2234466653
No 102
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.33 E-value=1.8e+02 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=22.8
Q ss_pred ccccchhHHHhhhhhccccchhHHHHHHHHH
Q 013653 2 AIELSNLMERSLSMLSSDHKSVVSMNLFVAL 32 (439)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l 32 (439)
.+|+++..||.|+.++=.+.....++..+++
T Consensus 75 lgd~At~gERl~allsWrdP~aT~lf~~~cl 105 (156)
T PF08372_consen 75 LGDVATQGERLQALLSWRDPRATALFVVFCL 105 (156)
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHH
Confidence 3688999999999996666666666665543
Done!