Query 013653
Match_columns 439
No_of_seqs 131 out of 1482
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.5 3.6E-13 1.2E-17 132.9 15.3 277 83-405 61-350 (388)
2 2l0e_A Sodium/hydrogen exchang 98.0 4.9E-07 1.7E-11 56.0 -0.9 31 145-175 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 97.3 1.3E-05 4.5E-10 47.1 -2.0 22 175-196 5-26 (28)
4 2k3c_A TMIX peptide; membrane 96.8 9.1E-06 3.1E-10 50.4 -6.3 31 260-290 2-32 (33)
5 2kbv_A Sodium/hydrogen exchang 95.9 0.0033 1.1E-07 37.0 1.8 23 381-404 2-24 (28)
6 3zux_A Transporter, ASBTNM; tr 94.2 4.1 0.00014 39.0 19.6 139 85-231 44-184 (332)
7 1y4e_A Sodium/hydrogen exchang 90.8 0.02 7E-07 33.2 -1.4 25 80-104 2-26 (27)
8 2zy9_A Mg2+ transporter MGTE; 24.6 3.4E+02 0.012 26.7 10.0 18 183-200 450-467 (473)
9 2q67_A Potassium channel prote 14.9 2.8E+02 0.0095 21.3 5.5 27 126-157 35-61 (114)
10 3vou_A ION transport 2 domain 11.7 3.4E+02 0.012 21.7 5.4 16 143-158 50-65 (148)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.48 E-value=3.6e-13 Score=132.86 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=183.5
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhc
Q 013653 83 DLFFIYLLPPIIFNAGFQVKKKQF----FRNFM--TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF 156 (439)
Q Consensus 83 ~~~~~i~L~~ilF~~g~~~~~~~l----~~~~~--~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alllGail 156 (439)
+++-+..+.+.+|..|+|+|.+.+ |+..+ .....+..|+++++.+ |+.+ +.+.+.+.--+++.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip 129 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP 129 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence 467788899999999999999877 55444 3566777787776544 4444 55666677889999
Q ss_pred ccccHHHHHHHhcccC--CC-cchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 157 AATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG 233 (439)
Q Consensus 157 s~Tdp~~v~~il~~~~--~~-~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~~G 233 (439)
++||.+..+.++...+ .| ..+..+.+.+.+||..++++..++.+ ++.+. ..... .+ ..
T Consensus 130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~---~~l~~---------~~-~~--- 190 (388)
T 1zcd_A 130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSM---ASLGV---------AA-VA--- 190 (388)
T ss_dssp SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCH---HHHHH---------HH-HH---
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccH---HHHHH---------HH-HH---
Confidence 9999999999998776 45 57799999999999999999888743 22222 11110 01 11
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhccccccCCchhhHHHHhHHHHH-HHH
Q 013653 234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATL-SFV 312 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lae~lg~sgila~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 312 (439)
....+.++|. +.+.......+ ....++.+|..|.++.+|.+++|+++.+..+++. ...++.++-.+.+ .++
T Consensus 191 ~~~~~~l~r~----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~--~~~~~le~~l~p~v~~~ 262 (388)
T 1zcd_A 191 IAVLAVLNLC----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAKRLEHVLHPWVAYL 262 (388)
T ss_dssp HHHHHHHHHT----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSS--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCC--CHHHHHHHHHHHHHHHH
Confidence 1112333333 22222222222 3366777899999999999999999996433221 2234455555554 468
Q ss_pred HHHHH-HHHhhcchhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh-ccCCCCCChhhhhhhhc-c
Q 013653 313 AEIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTK-KSSHEKIGLKQQLTIWW-A 389 (439)
Q Consensus 313 ~~~l~-Fv~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~ 389 (439)
+.|+| |...|..++... .+.. .... ...+.+..+++|+++++..+++..+.+ -+.+++.+|||..-+++ +
T Consensus 263 ilPlFaFanaGv~l~~~~-~~~l----~~~~--~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~ 335 (388)
T 1zcd_A 263 ILPLFAFANAGVSLQGVT-LDGL----TSIL--PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILC 335 (388)
T ss_dssp HHHHHHHHHCCCCCSSSC-CCTH----HHHS--STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHT
T ss_pred HHHHHHHHhcCeeecccc-hhhc----cChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHh
Confidence 89999 999999984321 0000 0001 112234558999999888777754333 24466899999988777 6
Q ss_pred CCCccHHHHHhhhccc
Q 013653 390 GLMRGAVSMALAYKQF 405 (439)
Q Consensus 390 glpRG~v~l~lA~~~~ 405 (439)
| .|+.+++..+...+
T Consensus 336 g-igftmsL~Ia~laf 350 (388)
T 1zcd_A 336 G-IGFTMSIFIASLAF 350 (388)
T ss_dssp T-CCHHHHHHHHHHHS
T ss_pred c-cchHHHHHHHHHhc
Confidence 7 49999999987765
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.00 E-value=4.9e-07 Score=55.95 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.8
Q ss_pred CHHHHHHHhhhcccccHHHHHHHhcccCCCc
Q 013653 145 KIGDYLAIGAIFAATDSVCTLQVLNQDETPL 175 (439)
Q Consensus 145 ~~~~alllGails~Tdp~~v~~il~~~~~~~ 175 (439)
+|..|+++|+++++|||+++.+++|+.+.|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4567899999999999999999999998775
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.28 E-value=1.3e-05 Score=47.12 Aligned_cols=22 Identities=59% Similarity=0.934 Sum_probs=20.4
Q ss_pred cchheeeehhhhhhHHHHHHHH
Q 013653 175 LLYSLVFGEGVVNDATSVVLFN 196 (439)
Q Consensus 175 ~l~~~l~ges~~nD~~aiilf~ 196 (439)
++..+++|||++||++++++|.
T Consensus 5 ~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 5 LLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp TTHHHHTTTTTTTTTTTTTTTT
T ss_pred eEEEEEEeeeeecccEEEEEEe
Confidence 7899999999999999999875
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=96.75 E-value=9.1e-06 Score=50.40 Aligned_cols=31 Identities=42% Similarity=0.748 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHhhccc
Q 013653 260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYT 290 (439)
Q Consensus 260 ~~~~~~~lae~lg~sgila~~~~Gl~~~~~~ 290 (439)
.+|.+|.+||.+|+||++++++||+.++++.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 3678899999999999999999999998753
No 5
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=95.91 E-value=0.0033 Score=36.97 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=20.5
Q ss_pred hhhhhhhccCCCccHHHHHhhhcc
Q 013653 381 KQQLTIWWAGLMRGAVSMALAYKQ 404 (439)
Q Consensus 381 ~~~~~~~~~glpRG~v~l~lA~~~ 404 (439)
+++..++|+|+ ||+++++++...
T Consensus 2 ~~Q~i~~~~GL-RGAvafaL~~~l 24 (28)
T 2kbv_A 2 KDQFIIAYGGL-RGAIAFSLGYLL 24 (28)
T ss_dssp CHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred CceeEEEeecc-hHHHHHHHHHhc
Confidence 47899999997 999999999864
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.20 E-value=4.1 Score=39.00 Aligned_cols=139 Identities=21% Similarity=0.222 Sum_probs=64.2
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--HHHHHHHhhhcccccHH
Q 013653 85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK--IGDYLAIGAIFAATDSV 162 (439)
Q Consensus 85 ~~~i~L~~ilF~~g~~~~~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~alllGails~Tdp~ 162 (439)
.....+..++|..|.++|.+++++..++.-... .+......+..+.++.+...+ +.+ ...++++=+..-+++..
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~-~~l~~~~vi~Pll~~~l~~~~---~l~~~~~~Glil~~~~P~~~~s 119 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVI-IGVIAQFAIMPATAWCLSKLL---NLPAEIAVGVILVGCCPGGTAS 119 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHSCCCTHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHhcCCchhHH
Confidence 345678899999999999999995544322111 122233333333333222111 333 22233332332222222
Q ss_pred HHHHHhcccCCCcchheeeehhhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 163 CTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVI 231 (439)
Q Consensus 163 ~v~~il~~~~~~~l~~~l~ges~~nD~~aiilf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~ 231 (439)
.+..-+-+ |+. ..-.....+|+..+++..-....+..++....+..+...+.+..++.-.++|.+
T Consensus 120 ~v~t~~a~-Gd~---~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~l~~~vllP~~lG~l 184 (332)
T 3zux_A 120 NVMTYLAR-GNV---ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLI 184 (332)
T ss_dssp HHHHHHTT-CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhC-CCH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111 232 223346677887887776655554433222223344444444444444444443
No 7
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=90.83 E-value=0.02 Score=33.21 Aligned_cols=25 Identities=44% Similarity=1.059 Sum_probs=21.4
Q ss_pred cChhHHHHHhhHHHhhhhhhcCChH
Q 013653 80 FSEDLFFIYLLPPIIFNAGFQVKKK 104 (439)
Q Consensus 80 ~~~~~~~~i~L~~ilF~~g~~~~~~ 104 (439)
+++++|+...||+|+|++|+.++.+
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 3677899999999999999988654
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=24.63 E-value=3.4e+02 Score=26.67 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=12.8
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 013653 183 EGVVNDATSVVLFNAIQS 200 (439)
Q Consensus 183 es~~nD~~aiilf~~~~~ 200 (439)
-+.++|++++..|..+..
T Consensus 450 itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 450 VATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356889998888765543
No 9
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=14.85 E-value=2.8e+02 Score=21.32 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHhhhcc
Q 013653 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFA 157 (439)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~alllGails 157 (439)
...|...+... +++++.+|+-+..+..
T Consensus 35 ~~~g~~~~~~~-----e~~~~~~a~y~~~~T~ 61 (114)
T 2q67_A 35 LISGTIFYSTV-----EGLRPIDALYFSVVTL 61 (114)
T ss_dssp HHHHHHHHHHH-----SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHh
Confidence 34454555444 2889999988876443
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=11.72 E-value=3.4e+02 Score=21.75 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=12.2
Q ss_pred CCCHHHHHHHhhhccc
Q 013653 143 TLKIGDYLAIGAIFAA 158 (439)
Q Consensus 143 ~~~~~~alllGails~ 158 (439)
++++..|+.+..+...
T Consensus 50 ~~~~~~a~y~~~~t~t 65 (148)
T 3vou_A 50 GLRPLDALYFSVVTLT 65 (148)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8899999888766433
Done!