Query 013653
Match_columns 439
No_of_seqs 131 out of 1482
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 14:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 60.9 13 0.00094 29.8 7.6 51 148-200 117-169 (173)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 12.2 2.4E+02 0.017 24.7 7.6 73 51-123 4-84 (405)
3 d1q90r_ f.23.12.1 (R:) ISP sub 11.7 1.4E+02 0.01 17.1 4.2 26 107-132 9-34 (39)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 5.3 1.5E+02 0.011 15.1 1.4 19 275-293 4-22 (27)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 5.2 8.5E+02 0.062 20.8 10.2 17 272-288 317-333 (383)
6 d1vk8a_ d.58.48.1 (A:) Hypothe 4.7 2.4E+02 0.017 19.3 2.8 31 162-194 23-57 (93)
7 d1lxja_ d.58.48.1 (A:) Hypothe 4.2 2.2E+02 0.016 19.9 2.4 32 161-194 26-61 (104)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 4.2 3E+02 0.022 14.2 4.1 12 222-233 10-21 (32)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 4.0 5.5E+02 0.04 17.1 5.7 29 216-244 70-98 (103)
10 d1f66c_ a.22.1.1 (C:) Histone 3.9 6.2E+02 0.045 17.3 4.7 26 251-276 31-56 (103)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=60.93 E-value=13 Score=29.81 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=26.5
Q ss_pred HHHHHhhhcccccHHHHHH-HhcccC-CCcchheeeehhhhhhHHHHHHHHHHHH
Q 013653 148 DYLAIGAIFAATDSVCTLQ-VLNQDE-TPLLYSLVFGEGVVNDATSVVLFNAIQS 200 (439)
Q Consensus 148 ~alllGails~Tdp~~v~~-il~~~~-~~~l~~~l~ges~~nD~~aiilf~~~~~ 200 (439)
.+++...++++. ..+..| ++|+.| +|...+- --.+.+||..++..|-.+..
T Consensus 117 ~sl~~~~~ia~~-~G~~lPlll~klg~DPA~aS~-P~itti~Di~g~~iyf~iA~ 169 (173)
T d2yvxa3 117 VSLVLIVFFANL-VGAMLPFLLRRLGVDPALVSN-PLVATLSDVTGLLIYLSVAR 169 (173)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHTSCCGGGSCS-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCChhhhhh-hHHHHHHHHHHHHHHHHHHH
Confidence 344433333333 333334 456666 4432211 11467899999998775543
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.17 E-value=2.4e+02 Score=24.75 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCC-CccccccChhHHH----HHhhHHHhhhhh---hcCChHHHHHhHHHHHHHHHHHHH
Q 013653 51 ESITALIIGLCTGIVILLTTNGT-SSHVLMFSEDLFF----IYLLPPIIFNAG---FQVKKKQFFRNFMTIMLFGAVGTL 122 (439)
Q Consensus 51 ~~~~~il~Gil~G~~~~~~~~~~-~~~~~~~~~~~~~----~i~L~~ilF~~g---~~~~~~~l~~~~~~~~~la~~~~~ 122 (439)
+...-++.|+++|.......+.. .....+.-.|.|. .+.+|++.+..- -+++-+..+|...+....-.....
T Consensus 4 rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~ 83 (405)
T d2nwwa1 4 KILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSA 83 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHH
Confidence 45666778888887654322110 0011222223332 445555544332 244445566666665555444444
Q ss_pred H
Q 013653 123 I 123 (439)
Q Consensus 123 ~ 123 (439)
+
T Consensus 84 i 84 (405)
T d2nwwa1 84 F 84 (405)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.75 E-value=1.4e+02 Score=17.12 Aligned_cols=26 Identities=35% Similarity=0.545 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 107 FRNFMTIMLFGAVGTLISFVIISAGA 132 (439)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~~~~~ 132 (439)
||+....+.++..+......+..+..
T Consensus 9 rR~~MNLll~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 9 KRNIMNLILAGGAGLPITTLALGYGA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhccceeE
Confidence 66677777777766666555555443
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.26 E-value=1.5e+02 Score=15.06 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHhhcccccc
Q 013653 275 GILTVFFCGIVMSHYTWHN 293 (439)
Q Consensus 275 gila~~~~Gl~~~~~~~~~ 293 (439)
|++-+..+|++.+.+.+.+
T Consensus 4 gli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 4555666788777655443
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.15 E-value=8.5e+02 Score=20.77 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.9
Q ss_pred hchhhHHHHHHHHHhhc
Q 013653 272 YLSGILTVFFCGIVMSH 288 (439)
Q Consensus 272 g~sgila~~~~Gl~~~~ 288 (439)
+..|+.|...+|++-+.
T Consensus 317 g~~Gi~G~l~~glfa~~ 333 (383)
T d1u7ga_ 317 GVCGIVGCIMTGIFAAS 333 (383)
T ss_dssp HHHHHHHHHHHHHHTSG
T ss_pred hhhHHHHHHHHHHhcCc
Confidence 56789999999998664
No 6
>d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
Probab=4.69 E-value=2.4e+02 Score=19.30 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=22.8
Q ss_pred HHHHHHhcccCCC-c---chheeeehhhhhhHHHHHH
Q 013653 162 VCTLQVLNQDETP-L---LYSLVFGEGVVNDATSVVL 194 (439)
Q Consensus 162 ~~v~~il~~~~~~-~---l~~~l~ges~~nD~~aiil 194 (439)
+.+..++++.|.+ + .++.++|| .+|.+.++=
T Consensus 23 ~~~i~~i~~sGl~y~v~pmgT~iEG~--~dev~~~v~ 57 (93)
T d1vk8a_ 23 DRAIEKISSWGMKYEVGPSNTTVEGE--FEEIMDRVK 57 (93)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEEEEC--HHHHHHHHH
T ss_pred HHHHHHHHHcCCceEecCCccEEeCC--HHHHHHHHH
Confidence 4556778888865 4 67889997 799877653
No 7
>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.20 E-value=2.2e+02 Score=19.95 Aligned_cols=32 Identities=6% Similarity=0.009 Sum_probs=23.8
Q ss_pred HHHHHHHhcccCCC-c---chheeeehhhhhhHHHHHH
Q 013653 161 SVCTLQVLNQDETP-L---LYSLVFGEGVVNDATSVVL 194 (439)
Q Consensus 161 p~~v~~il~~~~~~-~---l~~~l~ges~~nD~~aiil 194 (439)
.+.+..++++.|.+ + .++.++|| ++|...++=
T Consensus 26 Va~~i~~i~~sGl~y~~~pmgT~IEG~--~del~~~v~ 61 (104)
T d1lxja_ 26 VALIEKKIRESPLKSTLHSAGTTIEGP--WDDVMGLIG 61 (104)
T ss_dssp HHHHHHHHHTSSSEEEEETTEEEEEEE--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEecCCcceEECC--HHHHHHHHH
Confidence 34567788888865 4 57889997 999887764
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.18 E-value=3e+02 Score=14.22 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 013653 222 FIASTMLGVIAG 233 (439)
Q Consensus 222 ~~~~~~iG~~~G 233 (439)
.+.+...|+..|
T Consensus 10 vfialffgiavg 21 (32)
T d2e74e1 10 VFIALFFGIAVG 21 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 333334444444
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.03 E-value=5.5e+02 Score=17.07 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013653 216 GSFFYLFIASTMLGVIAGLLSAFIIKKLY 244 (439)
Q Consensus 216 ~~~l~~~~~~~~iG~~~G~~~~~~~~~~~ 244 (439)
...+..+.|-...+...+.+.....++.+
T Consensus 70 ~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 98 (103)
T d1r3jc_ 70 VAVVVMVAGITSFGLVTAALATWFVGREQ 98 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667778888887777776654
No 10
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Probab=3.86 E-value=6.2e+02 Score=17.35 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhhchhh
Q 013653 251 DREVALMILMAYLSYMLAELFYLSGI 276 (439)
Q Consensus 251 ~~~~~~~l~~~~~~~~lae~lg~sgi 276 (439)
.....-+...+.+-|..+|.++++|-
T Consensus 31 v~~~A~VyLaAvLEYL~aEILelagn 56 (103)
T d1f66c_ 31 VGATAAVYSAAILEYLTAEVLELAGN 56 (103)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceeeHHHHHHHHHHHHHHHhhh
Confidence 34566778888999999999988764
Done!