Query 013655
Match_columns 439
No_of_seqs 391 out of 1518
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01299 synapt_SV2 synaptic 100.0 1.6E-37 3.4E-42 312.2 32.1 408 15-439 153-680 (742)
2 KOG0253 Synaptic vesicle trans 100.0 6E-36 1.3E-40 263.9 32.3 394 14-439 63-466 (528)
3 COG2271 UhpC Sugar phosphate p 100.0 4E-33 8.7E-38 252.5 23.1 346 22-439 22-378 (448)
4 TIGR00887 2A0109 phosphate:H+ 100.0 1.2E-31 2.6E-36 265.3 34.1 364 18-439 5-424 (502)
5 TIGR00895 2A0115 benzoate tran 100.0 1.4E-30 3E-35 250.7 32.5 359 22-439 10-370 (398)
6 PRK11551 putative 3-hydroxyphe 100.0 1.1E-30 2.5E-35 252.2 31.9 330 23-439 9-340 (406)
7 TIGR02332 HpaX 4-hydroxyphenyl 100.0 2.5E-30 5.5E-35 249.4 32.1 353 25-439 4-365 (412)
8 TIGR00891 2A0112 putative sial 100.0 4.3E-30 9.4E-35 248.0 31.5 351 23-439 6-360 (405)
9 PRK10642 proline/glycine betai 100.0 5.4E-30 1.2E-34 252.7 30.0 334 28-439 15-374 (490)
10 PRK12307 putative sialic acid 100.0 8.2E-30 1.8E-34 247.8 30.3 337 25-439 14-353 (426)
11 COG2814 AraJ Arabinose efflux 100.0 1.1E-29 2.3E-34 233.6 27.8 318 26-437 10-330 (394)
12 TIGR00898 2A0119 cation transp 100.0 2.4E-30 5.2E-35 257.0 25.2 326 50-439 110-442 (505)
13 TIGR00903 2A0129 major facilit 100.0 1.7E-29 3.6E-34 238.9 27.9 305 41-439 3-312 (368)
14 PRK10406 alpha-ketoglutarate t 100.0 3.5E-29 7.5E-34 243.3 30.4 323 26-439 19-368 (432)
15 PRK10077 xylE D-xylose transpo 100.0 3.9E-29 8.4E-34 246.8 29.5 356 24-439 7-396 (479)
16 PRK09556 uhpT sugar phosphate 100.0 6.3E-30 1.4E-34 251.0 20.8 350 19-439 19-381 (467)
17 TIGR00879 SP MFS transporter, 100.0 9.9E-29 2.2E-33 243.6 28.1 358 33-439 32-415 (481)
18 PRK03545 putative arabinose tr 100.0 1.6E-28 3.4E-33 235.8 28.5 315 28-438 8-325 (390)
19 PLN00028 nitrate transmembrane 100.0 2.8E-28 6.1E-33 239.2 29.4 338 19-438 26-379 (476)
20 PRK03699 putative transporter; 100.0 3.2E-28 6.9E-33 233.9 28.9 318 27-437 5-324 (394)
21 PRK11663 regulatory protein Uh 100.0 2E-28 4.3E-33 238.1 27.2 182 25-206 19-202 (434)
22 PRK09952 shikimate transporter 100.0 6.8E-28 1.5E-32 234.4 30.2 327 27-439 20-375 (438)
23 KOG0569 Permease of the major 100.0 4.4E-28 9.5E-33 229.7 27.0 330 56-439 46-400 (485)
24 PRK10213 nepI ribonucleoside t 100.0 1.5E-27 3.3E-32 228.7 30.8 316 27-438 18-336 (394)
25 PRK15075 citrate-proton sympor 100.0 2.7E-27 5.9E-32 230.2 31.0 323 28-439 14-363 (434)
26 PRK15034 nitrate/nitrite trans 100.0 2E-27 4.3E-32 226.4 28.4 316 25-437 30-375 (462)
27 TIGR00890 2A0111 Oxalate/Forma 100.0 2.8E-28 6E-33 232.8 22.8 306 44-439 18-327 (377)
28 PRK14995 methyl viologen resis 100.0 3.6E-27 7.8E-32 232.8 31.2 367 27-438 4-382 (495)
29 TIGR00893 2A0114 d-galactonate 100.0 7E-28 1.5E-32 231.5 24.2 331 39-439 4-343 (399)
30 COG2223 NarK Nitrate/nitrite t 100.0 3.5E-27 7.5E-32 214.5 26.0 324 23-438 8-345 (417)
31 TIGR00900 2A0121 H+ Antiporter 100.0 2.5E-27 5.3E-32 225.3 26.4 321 35-439 5-333 (365)
32 PRK03893 putative sialic acid 100.0 4.6E-27 9.9E-32 233.1 29.3 183 24-206 15-198 (496)
33 PF07690 MFS_1: Major Facilita 100.0 4.7E-28 1E-32 229.2 21.3 321 36-439 3-331 (352)
34 TIGR00710 efflux_Bcr_CflA drug 100.0 4.4E-27 9.5E-32 225.5 27.7 312 37-438 13-331 (385)
35 PRK09705 cynX putative cyanate 100.0 5.2E-27 1.1E-31 225.2 26.9 295 46-437 26-322 (393)
36 PRK10133 L-fucose transporter; 100.0 2.1E-26 4.5E-31 223.3 29.7 324 25-438 22-378 (438)
37 PRK11273 glpT sn-glycerol-3-ph 100.0 1.6E-26 3.4E-31 226.0 27.9 183 24-207 24-213 (452)
38 TIGR00886 2A0108 nitrite extru 100.0 7.1E-27 1.5E-31 222.5 24.8 328 32-438 4-349 (366)
39 TIGR00894 2A0114euk Na(+)-depe 100.0 1.3E-26 2.8E-31 227.7 26.9 288 23-384 13-327 (465)
40 TIGR00711 efflux_EmrB drug res 100.0 1.4E-26 2.9E-31 229.1 26.9 361 30-438 3-379 (485)
41 PRK05122 major facilitator sup 100.0 2.3E-26 5E-31 221.6 27.6 307 31-438 17-333 (399)
42 PRK10091 MFS transport protein 100.0 1.6E-26 3.5E-31 221.1 25.6 297 31-422 5-304 (382)
43 KOG0254 Predicted transporter 100.0 2.1E-26 4.6E-31 228.1 25.5 323 64-439 89-427 (513)
44 PRK15402 multidrug efflux syst 100.0 1.5E-25 3.2E-30 216.5 29.6 316 25-429 9-331 (406)
45 PRK12382 putative transporter; 100.0 5.5E-26 1.2E-30 218.4 26.3 304 34-438 20-333 (392)
46 TIGR00885 fucP L-fucose:H+ sym 100.0 1.4E-25 3.1E-30 215.6 29.0 318 31-438 5-352 (410)
47 PRK11043 putative transporter; 99.9 3.7E-25 8.1E-30 213.3 29.9 307 38-438 15-327 (401)
48 TIGR00881 2A0104 phosphoglycer 99.9 9.4E-27 2E-31 222.5 18.2 170 37-206 3-175 (379)
49 PRK10504 putative transporter; 99.9 5.9E-25 1.3E-29 216.5 30.7 362 31-438 12-384 (471)
50 TIGR00899 2A0120 sugar efflux 99.9 1.8E-25 3.9E-30 213.6 25.6 309 37-439 5-320 (375)
51 cd06174 MFS The Major Facilita 99.9 5.9E-25 1.3E-29 207.7 27.7 291 34-438 4-296 (352)
52 PRK11195 lysophospholipid tran 99.9 7E-25 1.5E-29 210.2 28.2 315 34-438 8-324 (393)
53 PRK03633 putative MFS family t 99.9 6.9E-25 1.5E-29 209.9 27.3 308 31-438 8-316 (381)
54 TIGR00897 2A0118 polyol permea 99.9 1.3E-24 2.7E-29 209.4 29.3 303 47-438 31-346 (402)
55 KOG0255 Synaptic vesicle trans 99.9 3.9E-25 8.5E-30 220.2 26.3 323 56-438 110-437 (521)
56 PRK10473 multidrug efflux syst 99.9 2.4E-24 5.1E-29 207.1 30.7 169 37-205 11-181 (392)
57 TIGR00712 glpT glycerol-3-phos 99.9 2.1E-25 4.6E-30 217.2 23.3 180 26-206 24-210 (438)
58 PRK10489 enterobactin exporter 99.9 1.8E-25 3.9E-30 216.6 22.5 312 38-438 26-343 (417)
59 TIGR00892 2A0113 monocarboxyla 99.9 5E-25 1.1E-29 215.1 25.6 346 23-438 13-364 (455)
60 PRK11652 emrD multidrug resist 99.9 2.5E-24 5.5E-29 207.0 29.9 177 29-205 8-186 (394)
61 PRK09874 drug efflux system pr 99.9 1.9E-24 4.1E-29 209.0 29.0 316 33-438 18-342 (408)
62 PRK11102 bicyclomycin/multidru 99.9 1.3E-24 2.7E-29 207.9 26.8 162 44-205 6-169 (377)
63 TIGR00901 2A0125 AmpG-related 99.9 7.8E-25 1.7E-29 207.7 24.5 306 46-439 5-341 (356)
64 TIGR00883 2A0106 metabolite-pr 99.9 2.7E-24 5.8E-29 206.6 28.1 313 40-439 4-344 (394)
65 PRK15403 multidrug efflux syst 99.9 6.1E-24 1.3E-28 205.0 28.8 172 34-205 21-194 (413)
66 PRK10054 putative transporter; 99.9 3.7E-24 8.1E-29 205.3 24.8 311 36-438 14-329 (395)
67 KOG1330 Sugar transporter/spin 99.9 5.2E-26 1.1E-30 208.4 11.1 182 24-205 28-212 (493)
68 PRK11646 multidrug resistance 99.9 2.6E-23 5.6E-28 199.9 29.2 296 49-439 31-329 (400)
69 TIGR00896 CynX cyanate transpo 99.9 3.1E-24 6.8E-29 203.4 22.4 292 46-434 17-312 (355)
70 PF00083 Sugar_tr: Sugar (and 99.9 2.1E-29 4.6E-34 246.8 -15.2 344 37-439 8-381 (451)
71 KOG2532 Permease of the major 99.9 3.2E-23 6.9E-28 199.0 26.2 275 58-406 67-355 (466)
72 TIGR00902 2A0127 phenyl propri 99.9 3E-23 6.4E-28 198.5 25.9 310 34-438 9-323 (382)
73 PRK15011 sugar efflux transpor 99.9 5.2E-23 1.1E-27 197.6 27.5 167 38-205 24-197 (393)
74 KOG0252 Inorganic phosphate tr 99.9 4.7E-24 1E-28 194.7 18.4 358 24-439 36-438 (538)
75 PRK11902 ampG muropeptide tran 99.9 2.8E-22 6.2E-27 193.2 29.5 314 35-438 5-338 (402)
76 PRK11128 putative 3-phenylprop 99.9 8.3E-23 1.8E-27 195.5 25.6 304 38-435 13-321 (382)
77 KOG2504 Monocarboxylate transp 99.9 1.5E-23 3.3E-28 203.7 19.9 372 23-438 40-419 (509)
78 PRK11010 ampG muropeptide tran 99.9 3.2E-22 7E-27 196.8 29.5 172 32-205 15-197 (491)
79 KOG2533 Permease of the major 99.9 1.4E-22 3E-27 195.0 25.9 299 27-396 43-355 (495)
80 TIGR00806 rfc RFC reduced fola 99.9 3.3E-22 7.1E-27 187.2 25.0 179 25-206 24-206 (511)
81 PRK09528 lacY galactoside perm 99.9 3.9E-22 8.4E-27 193.4 25.0 320 36-439 17-347 (420)
82 TIGR00805 oat sodium-independe 99.9 6.8E-23 1.5E-27 206.1 19.5 302 32-399 36-414 (633)
83 PRK08633 2-acyl-glycerophospho 99.9 6.5E-22 1.4E-26 215.4 28.6 310 47-439 28-354 (1146)
84 PTZ00207 hypothetical protein; 99.9 9.9E-22 2.2E-26 192.6 26.9 176 25-204 24-207 (591)
85 COG0738 FucP Fucose permease [ 99.9 1.9E-21 4.1E-26 176.0 26.1 319 29-437 13-354 (422)
86 PRK06814 acylglycerophosphoeth 99.9 9.3E-22 2E-26 213.6 26.8 320 35-439 21-366 (1140)
87 TIGR00882 2A0105 oligosacchari 99.9 4.1E-21 8.9E-26 184.8 26.5 321 33-437 6-337 (396)
88 PF05977 MFS_3: Transmembrane 99.9 6.4E-21 1.4E-25 186.3 25.2 321 31-438 12-338 (524)
89 PRK10207 dipeptide/tripeptide 99.9 1.7E-20 3.6E-25 183.8 27.8 173 31-203 16-194 (489)
90 TIGR00924 yjdL_sub1_fam amino 99.9 5.9E-20 1.3E-24 179.9 30.1 171 32-202 13-191 (475)
91 TIGR00889 2A0110 nucleoside tr 99.9 5.1E-20 1.1E-24 177.8 25.2 314 38-438 11-339 (418)
92 TIGR00792 gph sugar (Glycoside 99.9 1.6E-20 3.5E-25 183.2 21.8 300 49-437 20-341 (437)
93 COG2807 CynX Cyanate permease 99.9 6E-20 1.3E-24 163.8 22.9 297 42-435 25-324 (395)
94 KOG2615 Permease of the major 99.9 3.4E-20 7.4E-25 165.8 18.1 121 57-177 61-181 (451)
95 KOG3764 Vesicular amine transp 99.8 4.5E-21 9.7E-26 172.4 11.3 148 57-204 99-248 (464)
96 PF06609 TRI12: Fungal trichot 99.8 1.9E-18 4E-23 168.6 28.6 165 34-199 49-213 (599)
97 TIGR02718 sider_RhtX_FptX side 99.8 1.7E-18 3.7E-23 166.3 27.2 272 31-394 3-284 (390)
98 PRK09584 tppB putative tripept 99.8 1.4E-18 3E-23 171.2 24.8 162 36-197 28-195 (500)
99 TIGR01301 GPH_sucrose GPH fami 99.8 6.7E-18 1.4E-22 162.5 24.9 329 39-437 14-410 (477)
100 PRK15462 dipeptide/tripeptide 99.8 6.7E-17 1.5E-21 156.2 29.4 165 35-199 15-185 (493)
101 PF13347 MFS_2: MFS/sugar tran 99.8 2.5E-18 5.4E-23 167.1 19.1 298 49-437 22-345 (428)
102 PRK09669 putative symporter Ya 99.8 1.5E-17 3.2E-22 162.5 22.1 298 48-437 29-349 (444)
103 TIGR00788 fbt folate/biopterin 99.8 5.4E-17 1.2E-21 158.6 21.0 337 28-439 25-383 (468)
104 PRK10429 melibiose:sodium symp 99.8 1.1E-16 2.3E-21 157.5 21.6 302 49-437 27-354 (473)
105 PF03825 Nuc_H_symport: Nucleo 99.8 7.8E-16 1.7E-20 146.4 26.7 313 37-439 10-333 (400)
106 PRK11462 putative transporter; 99.7 1.3E-15 2.8E-20 148.8 26.6 150 49-198 30-199 (460)
107 PRK10642 proline/glycine betai 99.7 1.7E-15 3.6E-20 149.8 22.9 184 43-226 264-458 (490)
108 PF01306 LacY_symp: LacY proto 99.7 2.2E-15 4.7E-20 140.9 21.4 319 35-438 13-343 (412)
109 PF11700 ATG22: Vacuole efflux 99.7 6.4E-14 1.4E-18 135.9 30.5 292 64-439 70-412 (477)
110 PRK09848 glucuronide transport 99.7 4E-15 8.8E-20 145.5 22.4 297 49-437 29-349 (448)
111 COG2211 MelB Na+/melibiose sym 99.7 1.2E-14 2.6E-19 137.2 23.6 303 47-436 31-356 (467)
112 KOG2563 Permease of the major 99.7 3.9E-14 8.4E-19 130.4 24.2 327 22-435 38-387 (480)
113 TIGR01272 gluP glucose/galacto 99.7 4.3E-15 9.3E-20 137.3 18.0 237 113-438 6-261 (310)
114 COG3104 PTR2 Dipeptide/tripept 99.6 4.1E-14 8.9E-19 132.5 19.8 153 51-203 44-206 (498)
115 TIGR00889 2A0110 nucleoside tr 99.6 2.1E-14 4.6E-19 138.8 17.3 156 50-205 229-405 (418)
116 TIGR00890 2A0111 Oxalate/Forma 99.6 2.6E-14 5.7E-19 136.3 17.2 148 49-196 225-375 (377)
117 TIGR01299 synapt_SV2 synaptic 99.6 5.3E-14 1.1E-18 142.7 20.1 139 67-206 598-737 (742)
118 PRK15011 sugar efflux transpor 99.6 8.1E-14 1.7E-18 134.0 19.6 154 50-204 237-392 (393)
119 PF05631 DUF791: Protein of un 99.6 8.2E-13 1.8E-17 119.6 23.6 178 23-205 32-219 (354)
120 PRK09528 lacY galactoside perm 99.6 6.7E-14 1.5E-18 135.8 18.0 147 58-204 256-405 (420)
121 PRK11551 putative 3-hydroxyphe 99.6 1.5E-13 3.2E-18 132.8 20.1 158 45-202 236-395 (406)
122 KOG4686 Predicted sugar transp 99.6 2.1E-15 4.5E-20 129.8 5.9 154 27-180 42-200 (459)
123 TIGR00880 2_A_01_02 Multidrug 99.6 1.6E-14 3.6E-19 117.0 10.9 132 70-201 4-136 (141)
124 cd06174 MFS The Major Facilita 99.6 3.6E-13 7.8E-18 127.1 20.1 163 39-201 185-350 (352)
125 PRK05122 major facilitator sup 99.6 4.1E-13 8.8E-18 129.5 20.1 155 49-205 236-391 (399)
126 PRK09556 uhpT sugar phosphate 99.5 3.6E-13 7.9E-18 132.4 19.1 172 31-202 260-448 (467)
127 TIGR00902 2A0127 phenyl propri 99.5 4.1E-13 8.9E-18 128.6 18.8 151 47-199 223-375 (382)
128 TIGR00899 2A0120 sugar efflux 99.5 8.3E-13 1.8E-17 126.1 20.7 150 53-203 224-374 (375)
129 COG2270 Permeases of the major 99.5 2.1E-12 4.6E-17 118.5 21.6 290 64-439 58-373 (438)
130 PRK03545 putative arabinose tr 99.5 3.1E-12 6.7E-17 122.9 23.6 151 49-201 226-378 (390)
131 TIGR00897 2A0118 polyol permea 99.5 1.2E-12 2.6E-17 126.2 20.1 164 38-202 231-400 (402)
132 PRK09874 drug efflux system pr 99.5 9.6E-13 2.1E-17 127.2 19.3 136 66-201 260-396 (408)
133 PRK10489 enterobactin exporter 99.5 6.1E-13 1.3E-17 129.0 17.7 157 49-205 243-402 (417)
134 PRK12382 putative transporter; 99.5 1.9E-12 4.1E-17 124.5 19.4 152 48-201 235-387 (392)
135 TIGR00892 2A0113 monocarboxyla 99.5 5.6E-13 1.2E-17 130.4 14.4 160 38-197 250-415 (455)
136 PRK03633 putative MFS family t 99.5 3.7E-12 8.1E-17 121.9 19.6 151 49-202 220-371 (381)
137 PRK03893 putative sialic acid 99.5 1.7E-12 3.7E-17 128.9 16.6 146 49-194 295-444 (496)
138 PRK09705 cynX putative cyanate 99.5 6E-12 1.3E-16 121.0 19.5 163 42-206 218-385 (393)
139 PRK03699 putative transporter; 99.5 3.8E-12 8.3E-17 122.4 18.1 165 38-203 214-380 (394)
140 TIGR00879 SP MFS transporter, 99.4 3.5E-12 7.7E-17 125.7 17.3 176 30-205 285-473 (481)
141 TIGR00883 2A0106 metabolite-pr 99.4 1.6E-12 3.5E-17 124.7 14.4 156 38-193 228-391 (394)
142 TIGR00893 2A0114 d-galactonate 99.4 1E-11 2.2E-16 119.1 19.9 166 34-199 220-395 (399)
143 PF03209 PUCC: PUCC protein; 99.4 1.8E-11 3.9E-16 112.8 20.1 285 54-426 5-320 (403)
144 PRK09952 shikimate transporter 99.4 1.8E-11 3.9E-16 119.4 21.2 158 48-205 269-435 (438)
145 KOG2325 Predicted transporter/ 99.4 6.1E-12 1.3E-16 119.3 17.0 184 23-206 28-233 (488)
146 PRK12307 putative sialic acid 99.4 2.3E-11 5E-16 118.3 21.3 140 48-187 250-392 (426)
147 TIGR00891 2A0112 putative sial 99.4 8.7E-12 1.9E-16 120.3 17.9 137 52-188 262-401 (405)
148 KOG3626 Organic anion transpor 99.4 6.4E-12 1.4E-16 124.0 17.0 303 31-399 99-476 (735)
149 PF03137 OATP: Organic Anion T 99.4 2.8E-14 6E-19 140.4 -0.2 171 35-205 9-252 (539)
150 PRK11128 putative 3-phenylprop 99.4 1.5E-11 3.2E-16 117.8 18.3 145 51-197 227-373 (382)
151 PF01770 Folate_carrier: Reduc 99.4 2.5E-10 5.4E-15 106.5 25.5 159 49-207 24-186 (412)
152 PF05977 MFS_3: Transmembrane 99.4 1.7E-11 3.6E-16 120.5 18.6 150 50-199 239-390 (524)
153 PF11700 ATG22: Vacuole efflux 99.4 4.8E-11 1E-15 116.0 21.5 158 48-205 301-470 (477)
154 PRK11273 glpT sn-glycerol-3-ph 99.4 2.8E-11 6.1E-16 118.6 20.0 157 44-200 268-432 (452)
155 TIGR00900 2A0121 H+ Antiporter 99.4 1.5E-11 3.2E-16 116.8 17.0 131 50-180 232-365 (365)
156 COG2814 AraJ Arabinose efflux 99.4 2.7E-11 5.9E-16 112.4 17.8 162 39-202 222-385 (394)
157 PRK10077 xylE D-xylose transpo 99.4 5.2E-11 1.1E-15 117.7 21.2 161 45-205 287-460 (479)
158 TIGR00887 2A0109 phosphate:H+ 99.4 2.6E-11 5.7E-16 120.4 18.9 170 37-206 296-492 (502)
159 PRK10504 putative transporter; 99.4 3E-11 6.6E-16 119.1 18.4 144 39-182 271-419 (471)
160 PRK11010 ampG muropeptide tran 99.4 5.9E-11 1.3E-15 117.1 19.6 155 50-204 244-404 (491)
161 TIGR00792 gph sugar (Glycoside 99.4 1E-10 2.3E-15 114.1 21.0 134 47-181 240-383 (437)
162 PRK11663 regulatory protein Uh 99.3 4.7E-11 1E-15 116.3 18.2 164 36-200 250-421 (434)
163 TIGR02718 sider_RhtX_FptX side 99.3 6.9E-11 1.5E-15 113.6 18.8 148 51-198 230-386 (390)
164 COG2271 UhpC Sugar phosphate p 99.3 1.9E-11 4.2E-16 112.2 14.0 172 29-200 252-431 (448)
165 TIGR00895 2A0115 benzoate tran 99.3 5.6E-11 1.2E-15 114.3 18.0 139 37-175 258-397 (398)
166 TIGR00882 2A0105 oligosacchari 99.3 8.3E-11 1.8E-15 113.3 19.1 139 60-198 250-390 (396)
167 PRK15075 citrate-proton sympor 99.3 1.2E-10 2.6E-15 113.5 20.4 142 41-182 250-398 (434)
168 TIGR01272 gluP glucose/galacto 99.3 1.1E-10 2.4E-15 108.0 18.8 156 33-191 144-303 (310)
169 PRK10406 alpha-ketoglutarate t 99.3 1.3E-10 2.9E-15 113.1 19.4 157 46-203 260-424 (432)
170 PRK15402 multidrug efflux syst 99.3 2.5E-10 5.3E-15 110.4 20.8 145 50-195 236-387 (406)
171 KOG2504 Monocarboxylate transp 99.3 2.1E-11 4.5E-16 119.2 13.2 175 29-203 298-476 (509)
172 KOG0569 Permease of the major 99.3 2.7E-10 5.8E-15 109.1 19.6 181 25-206 266-458 (485)
173 PLN00028 nitrate transmembrane 99.3 6.5E-11 1.4E-15 116.6 15.8 149 53-203 277-433 (476)
174 PRK10054 putative transporter; 99.3 1.4E-10 3E-15 111.5 17.2 143 57-200 237-381 (395)
175 PRK11902 ampG muropeptide tran 99.3 4.1E-10 8.9E-15 108.7 20.3 147 52-202 233-389 (402)
176 PF01306 LacY_symp: LacY proto 99.3 2.3E-10 5E-15 107.4 17.6 149 57-205 252-403 (412)
177 COG2223 NarK Nitrate/nitrite t 99.3 9.7E-11 2.1E-15 107.7 14.3 160 38-201 227-399 (417)
178 PRK10213 nepI ribonucleoside t 99.3 7.7E-10 1.7E-14 106.3 21.4 147 49-196 237-384 (394)
179 PF06813 Nodulin-like: Nodulin 99.3 2.5E-10 5.4E-15 100.3 16.0 176 27-205 1-184 (250)
180 TIGR02332 HpaX 4-hydroxyphenyl 99.2 2.1E-10 4.5E-15 111.0 16.1 161 32-192 245-410 (412)
181 PRK10091 MFS transport protein 99.2 1.1E-09 2.4E-14 104.9 20.9 148 49-198 220-371 (382)
182 TIGR00898 2A0119 cation transp 99.2 2.5E-10 5.4E-15 113.7 16.6 148 54-206 348-498 (505)
183 COG2270 Permeases of the major 99.2 3.2E-10 6.9E-15 104.4 15.7 153 53-205 277-431 (438)
184 KOG2816 Predicted transporter 99.2 2.3E-10 5E-15 110.1 15.6 166 36-206 29-203 (463)
185 TIGR00712 glpT glycerol-3-phos 99.2 3.5E-10 7.6E-15 110.4 16.3 159 47-205 269-436 (438)
186 TIGR00710 efflux_Bcr_CflA drug 99.2 2E-09 4.3E-14 103.2 20.4 136 51-187 228-370 (385)
187 PRK09848 glucuronide transport 99.2 2E-09 4.3E-14 105.5 20.3 135 47-181 246-391 (448)
188 PRK11646 multidrug resistance 99.2 6.8E-10 1.5E-14 106.9 16.4 149 50-198 229-383 (400)
189 PF03825 Nuc_H_symport: Nucleo 99.2 1.6E-09 3.4E-14 103.4 18.6 159 40-198 218-390 (400)
190 TIGR00903 2A0129 major facilit 99.2 1.9E-09 4E-14 102.4 19.0 167 32-204 195-366 (368)
191 PRK15034 nitrate/nitrite trans 99.2 1.6E-09 3.5E-14 104.1 18.5 161 39-200 262-451 (462)
192 TIGR00896 CynX cyanate transpo 99.2 6.7E-10 1.5E-14 105.3 15.9 137 43-180 211-350 (355)
193 TIGR00881 2A0104 phosphoglycer 99.2 3.9E-10 8.5E-15 107.6 14.4 148 38-185 225-379 (379)
194 PRK08633 2-acyl-glycerophospho 99.2 1.4E-09 3.1E-14 119.1 19.7 142 50-191 254-398 (1146)
195 PRK10429 melibiose:sodium symp 99.2 6E-09 1.3E-13 102.7 22.1 139 43-181 245-396 (473)
196 PRK10133 L-fucose transporter; 99.1 2.8E-09 6.1E-14 103.7 18.1 141 53-196 283-426 (438)
197 PRK06814 acylglycerophosphoeth 99.1 2E-09 4.4E-14 117.7 18.6 141 51-191 247-410 (1140)
198 TIGR00711 efflux_EmrB drug res 99.1 1.4E-09 3.1E-14 107.7 15.7 139 40-178 266-410 (485)
199 TIGR00901 2A0125 AmpG-related 99.1 1.8E-09 4E-14 102.3 15.5 118 45-162 225-355 (356)
200 PRK10473 multidrug efflux syst 99.1 4.9E-09 1.1E-13 100.8 18.6 134 54-192 229-363 (392)
201 PRK11195 lysophospholipid tran 99.1 5.9E-09 1.3E-13 100.2 18.8 144 53-198 230-375 (393)
202 TIGR00894 2A0114euk Na(+)-depe 99.1 4.2E-09 9.2E-14 103.7 18.0 172 31-203 263-450 (465)
203 TIGR00926 2A1704 Peptide:H+ sy 99.1 2E-07 4.4E-12 94.0 29.8 153 49-201 8-180 (654)
204 PF03092 BT1: BT1 family; Int 99.1 2.6E-09 5.7E-14 103.3 15.8 156 48-204 9-176 (433)
205 PRK14995 methyl viologen resis 99.1 3E-09 6.4E-14 105.5 15.9 131 47-177 277-412 (495)
206 PRK09669 putative symporter Ya 99.1 2.1E-08 4.5E-13 98.2 20.9 131 51-181 251-391 (444)
207 PRK11043 putative transporter; 99.1 3.6E-08 7.8E-13 95.1 21.8 135 49-184 223-363 (401)
208 PF13347 MFS_2: MFS/sugar tran 99.1 7.2E-09 1.6E-13 100.8 17.0 143 38-181 234-387 (428)
209 PRK11102 bicyclomycin/multidru 99.0 3.8E-08 8.2E-13 94.1 20.7 120 54-174 220-345 (377)
210 KOG4686 Predicted sugar transp 99.0 6E-09 1.3E-13 90.5 13.3 147 54-202 290-442 (459)
211 PF07690 MFS_1: Major Facilita 99.0 5.7E-09 1.2E-13 98.6 13.5 129 41-169 218-352 (352)
212 KOG0253 Synaptic vesicle trans 99.0 5.5E-09 1.2E-13 94.1 12.0 128 73-205 390-521 (528)
213 KOG4332 Predicted sugar transp 98.9 5.9E-09 1.3E-13 89.7 9.5 152 38-190 46-207 (454)
214 COG2807 CynX Cyanate permease 98.9 1.4E-07 3E-12 85.5 18.2 169 31-200 210-382 (395)
215 PRK11462 putative transporter; 98.9 4.5E-07 9.7E-12 88.9 23.7 120 62-181 261-390 (460)
216 COG2211 MelB Na+/melibiose sym 98.9 2.1E-07 4.6E-12 88.6 19.8 145 37-181 244-399 (467)
217 TIGR00885 fucP L-fucose:H+ sym 98.9 9.6E-08 2.1E-12 92.2 17.2 140 51-193 254-402 (410)
218 PRK11652 emrD multidrug resist 98.9 3.9E-07 8.5E-12 87.7 21.4 128 54-182 233-364 (394)
219 TIGR00924 yjdL_sub1_fam amino 98.8 2.6E-07 5.7E-12 90.9 19.0 135 66-200 314-465 (475)
220 TIGR00769 AAA ADP/ATP carrier 98.8 6E-06 1.3E-10 79.8 27.3 142 31-176 9-189 (472)
221 KOG0637 Sucrose transporter an 98.8 1.6E-08 3.6E-13 93.8 8.3 136 39-174 42-201 (498)
222 COG0477 ProP Permeases of the 98.8 4.1E-07 8.9E-12 83.7 18.0 150 43-192 16-174 (338)
223 KOG3762 Predicted transporter 98.8 4.2E-08 9.1E-13 92.9 9.8 162 41-202 383-546 (618)
224 KOG2532 Permease of the major 98.8 1.9E-07 4E-12 90.6 14.5 172 30-202 259-446 (466)
225 TIGR00788 fbt folate/biopterin 98.7 5.3E-08 1.1E-12 95.6 10.7 148 57-204 281-447 (468)
226 KOG3098 Uncharacterized conser 98.7 3.2E-06 7E-11 80.6 22.2 105 70-175 56-161 (461)
227 COG0738 FucP Fucose permease [ 98.7 3.2E-07 6.9E-12 84.4 14.5 153 41-196 249-402 (422)
228 PF03209 PUCC: PUCC protein; 98.7 2.6E-06 5.7E-11 79.1 19.8 147 53-199 233-394 (403)
229 PF06963 FPN1: Ferroportin1 (F 98.7 1.1E-05 2.4E-10 77.1 24.5 343 33-438 6-387 (432)
230 PRK09584 tppB putative tripept 98.7 8.5E-07 1.9E-11 87.8 17.7 133 66-198 318-474 (500)
231 KOG0252 Inorganic phosphate tr 98.7 7.8E-08 1.7E-12 89.4 9.4 177 29-205 304-500 (538)
232 KOG0254 Predicted transporter 98.7 8.8E-07 1.9E-11 88.3 17.6 179 26-205 292-486 (513)
233 PF06779 DUF1228: Protein of u 98.7 2.3E-07 4.9E-12 66.2 9.2 80 41-120 4-83 (85)
234 TIGR00886 2A0108 nitrite extru 98.7 1.8E-07 3.9E-12 89.0 11.0 111 53-164 250-365 (366)
235 PF02487 CLN3: CLN3 protein; 98.6 2.6E-06 5.7E-11 79.9 17.1 131 67-203 62-196 (402)
236 PRK15403 multidrug efflux syst 98.6 8.6E-06 1.9E-10 78.8 20.6 151 42-194 231-388 (413)
237 KOG3764 Vesicular amine transp 98.5 2.9E-07 6.4E-12 84.2 6.9 156 44-199 285-450 (464)
238 PRK10207 dipeptide/tripeptide 98.5 7.4E-06 1.6E-10 80.8 16.8 133 67-199 312-472 (489)
239 PF00083 Sugar_tr: Sugar (and 98.4 7.5E-10 1.6E-14 108.6 -12.6 169 36-206 260-440 (451)
240 PF12832 MFS_1_like: MFS_1 lik 98.4 3.1E-06 6.8E-11 59.9 9.2 69 36-104 7-75 (77)
241 PF05978 UNC-93: Ion channel r 98.4 3.1E-05 6.6E-10 63.1 16.0 114 61-175 34-148 (156)
242 KOG3762 Predicted transporter 98.4 4.7E-06 1E-10 79.4 12.2 84 356-439 408-491 (618)
243 TIGR01301 GPH_sucrose GPH fami 98.4 3.2E-05 6.9E-10 75.3 18.0 139 68-206 309-475 (477)
244 PRK15462 dipeptide/tripeptide 98.3 1.4E-06 3E-11 85.0 8.3 122 309-439 9-132 (493)
245 PF06609 TRI12: Fungal trichot 98.3 3.9E-05 8.4E-10 76.1 18.2 144 31-174 312-463 (599)
246 PF03219 TLC: TLC ATP/ADP tran 98.3 0.0015 3.2E-08 63.9 27.9 152 22-177 17-205 (491)
247 PTZ00207 hypothetical protein; 98.2 6E-05 1.3E-09 75.1 15.2 171 31-202 355-551 (591)
248 COG3202 ATP/ADP translocase [E 98.1 0.0044 9.4E-08 59.2 26.4 151 23-177 21-209 (509)
249 KOG2533 Permease of the major 98.1 4.3E-05 9.3E-10 74.6 13.5 160 30-189 274-442 (495)
250 TIGR00939 2a57 Equilibrative N 98.1 0.00037 7.9E-09 67.4 18.9 80 357-437 310-402 (437)
251 KOG0255 Synaptic vesicle trans 98.0 0.00037 8E-09 69.8 17.3 151 53-207 342-497 (521)
252 COG3104 PTR2 Dipeptide/tripept 97.8 8.4E-05 1.8E-09 70.8 9.1 125 310-439 22-149 (498)
253 KOG1237 H+/oligopeptide sympor 97.8 0.0067 1.4E-07 60.6 22.5 155 47-201 56-243 (571)
254 KOG2816 Predicted transporter 97.8 0.0005 1.1E-08 66.7 14.2 122 55-176 268-390 (463)
255 KOG3810 Micronutrient transpor 97.8 0.00026 5.6E-09 64.0 10.8 157 50-206 26-186 (433)
256 KOG3574 Acetyl-CoA transporter 97.8 0.0011 2.4E-08 60.8 14.8 141 29-172 31-189 (510)
257 KOG2615 Permease of the major 97.8 0.00033 7.2E-09 64.3 11.4 122 56-177 289-413 (451)
258 TIGR00880 2_A_01_02 Multidrug 97.7 1.1E-05 2.3E-10 64.7 1.2 79 361-439 5-83 (141)
259 PF00854 PTR2: POT family; In 97.7 0.0002 4.3E-09 68.3 9.7 108 95-202 2-122 (372)
260 PF13000 Acatn: Acetyl-coenzym 97.6 0.0011 2.3E-08 63.3 12.9 141 33-175 4-177 (544)
261 KOG1330 Sugar transporter/spin 97.6 9.2E-05 2E-09 69.7 5.2 89 351-439 65-153 (493)
262 KOG2563 Permease of the major 97.4 0.0011 2.3E-08 62.5 9.8 158 45-202 282-449 (480)
263 TIGR00806 rfc RFC reduced fola 97.3 0.00056 1.2E-08 65.6 6.6 89 349-438 56-145 (511)
264 TIGR00805 oat sodium-independe 97.3 0.0003 6.4E-09 71.8 5.2 91 349-439 63-204 (633)
265 KOG1479 Nucleoside transporter 97.3 0.0096 2.1E-07 55.9 14.5 80 357-438 285-374 (406)
266 PF06963 FPN1: Ferroportin1 (F 97.2 0.018 3.9E-07 55.4 15.3 146 28-173 257-413 (432)
267 PRK03612 spermidine synthase; 97.0 0.071 1.5E-06 53.1 18.7 139 54-193 40-187 (521)
268 PF12832 MFS_1_like: MFS_1 lik 97.0 0.0047 1E-07 43.7 7.0 46 349-394 30-75 (77)
269 PF03092 BT1: BT1 family; Int 96.9 0.0058 1.3E-07 59.4 9.7 145 61-205 252-415 (433)
270 KOG2325 Predicted transporter/ 96.7 0.0047 1E-07 59.6 7.0 177 21-197 254-469 (488)
271 PF02487 CLN3: CLN3 protein; 96.6 0.053 1.2E-06 51.4 13.3 109 63-175 280-394 (402)
272 PF06813 Nodulin-like: Nodulin 96.5 0.0037 8E-08 55.3 4.6 73 320-403 13-85 (250)
273 KOG3097 Predicted membrane pro 96.4 0.64 1.4E-05 42.4 18.2 70 73-143 67-137 (390)
274 KOG3098 Uncharacterized conser 96.3 0.31 6.8E-06 47.2 16.9 106 66-172 281-408 (461)
275 PF05631 DUF791: Protein of un 96.2 0.056 1.2E-06 50.0 10.8 77 349-426 64-140 (354)
276 PF07672 MFS_Mycoplasma: Mycop 95.9 0.031 6.7E-07 49.1 7.1 55 148-202 2-61 (267)
277 PF05978 UNC-93: Ion channel r 95.2 0.22 4.8E-06 40.6 9.3 83 353-436 36-118 (156)
278 PF06779 DUF1228: Protein of u 95.1 0.11 2.3E-06 37.3 6.5 73 326-408 9-81 (85)
279 KOG3880 Predicted small molecu 94.0 0.21 4.6E-06 45.0 7.1 133 66-202 64-198 (409)
280 PF01770 Folate_carrier: Reduc 93.7 1.5 3.2E-05 41.9 12.7 99 62-160 283-384 (412)
281 PF03137 OATP: Organic Anion T 93.6 0.02 4.3E-07 57.2 0.0 149 30-178 306-514 (539)
282 TIGR00926 2A1704 Peptide:H+ sy 93.6 0.17 3.8E-06 51.7 6.7 87 351-437 20-115 (654)
283 TIGR00939 2a57 Equilibrative N 93.1 0.8 1.7E-05 44.5 10.2 107 67-174 310-430 (437)
284 PF01733 Nucleoside_tran: Nucl 92.0 0.028 6.1E-07 52.0 -1.4 79 358-437 186-278 (309)
285 COG0477 ProP Permeases of the 89.7 0.29 6.2E-06 44.4 3.1 83 356-438 41-125 (338)
286 PF03547 Mem_trans: Membrane t 89.4 17 0.00036 34.7 15.1 14 78-91 9-22 (385)
287 KOG3810 Micronutrient transpor 89.3 4.1 8.9E-05 37.8 9.8 128 67-197 274-415 (433)
288 KOG0637 Sucrose transporter an 88.7 2.2 4.8E-05 40.9 8.0 113 68-180 336-472 (498)
289 KOG4332 Predicted sugar transp 88.5 5.5 0.00012 35.6 9.7 128 66-197 284-425 (454)
290 TIGR00769 AAA ADP/ATP carrier 86.2 37 0.00079 33.5 21.1 71 125-195 274-346 (472)
291 KOG2881 Predicted membrane pro 85.0 22 0.00047 31.4 11.2 37 361-397 247-283 (294)
292 PF01733 Nucleoside_tran: Nucl 81.6 0.52 1.1E-05 43.6 0.3 106 68-174 186-306 (309)
293 COG4262 Predicted spermidine s 81.0 49 0.0011 31.0 15.7 85 59-143 38-132 (508)
294 PF03219 TLC: TLC ATP/ADP tran 80.5 64 0.0014 32.0 21.5 72 125-196 290-363 (491)
295 KOG2765 Predicted membrane pro 78.5 9.3 0.0002 35.5 7.2 27 304-330 155-181 (416)
296 KOG3626 Organic anion transpor 77.9 11 0.00024 38.9 8.3 75 30-104 393-471 (735)
297 PF11947 DUF3464: Protein of u 76.7 10 0.00022 30.6 6.2 51 115-167 95-145 (153)
298 KOG2601 Iron transporter [Inor 75.5 71 0.0015 30.4 11.9 161 33-194 31-217 (503)
299 KOG3097 Predicted membrane pro 74.7 35 0.00077 31.6 9.7 70 365-435 69-138 (390)
300 COG5336 Uncharacterized protei 74.5 15 0.00034 27.3 6.0 35 67-101 45-80 (116)
301 PRK10263 DNA translocase FtsK; 74.0 31 0.00067 38.1 10.6 32 163-194 142-173 (1355)
302 KOG1479 Nucleoside transporter 73.0 24 0.00051 33.8 8.6 106 66-173 284-400 (406)
303 KOG3574 Acetyl-CoA transporter 70.4 41 0.00089 32.0 9.2 60 124-183 376-436 (510)
304 KOG3880 Predicted small molecu 69.2 26 0.00055 32.2 7.5 69 107-175 332-401 (409)
305 PF02694 UPF0060: Uncharacteri 68.8 13 0.00028 27.8 4.7 52 63-114 53-104 (107)
306 PF13000 Acatn: Acetyl-coenzym 67.3 56 0.0012 32.3 9.9 60 123-182 411-471 (544)
307 PRK02237 hypothetical protein; 65.4 22 0.00047 26.6 5.3 52 64-115 56-107 (109)
308 PF06912 DUF1275: Protein of u 59.1 1.2E+02 0.0025 26.1 17.4 25 157-181 167-191 (209)
309 COG5336 Uncharacterized protei 57.5 34 0.00073 25.6 5.0 33 365-397 53-86 (116)
310 PF07672 MFS_Mycoplasma: Mycop 55.8 1.5E+02 0.0033 26.6 9.8 90 68-157 145-247 (267)
311 TIGR00844 c_cpa1 na(+)/h(+) an 55.4 2.8E+02 0.0061 29.4 22.4 34 159-192 108-141 (810)
312 COG1288 Predicted membrane pro 55.3 1.7E+02 0.0036 28.4 10.4 32 166-197 202-234 (481)
313 PF02990 EMP70: Endomembrane p 52.0 1.6E+02 0.0036 29.5 10.8 23 360-382 303-325 (521)
314 KOG1237 H+/oligopeptide sympor 51.2 99 0.0021 31.4 9.1 84 354-437 73-182 (571)
315 COG1268 BioY Uncharacterized c 50.8 60 0.0013 27.3 6.3 24 70-93 88-111 (184)
316 COG2962 RarD Predicted permeas 48.5 1.5E+02 0.0032 26.9 8.6 33 376-408 119-151 (293)
317 KOG4830 Predicted sugar transp 45.1 37 0.00081 30.3 4.3 64 34-97 22-94 (412)
318 PF12805 FUSC-like: FUSC-like 43.1 2E+02 0.0044 26.1 9.2 23 112-134 18-40 (284)
319 PRK10263 DNA translocase FtsK; 41.6 2.5E+02 0.0053 31.6 10.4 38 364-401 141-178 (1355)
320 PF02632 BioY: BioY family; I 37.1 1.4E+02 0.003 24.1 6.3 26 70-95 59-84 (148)
321 COG1230 CzcD Co/Zn/Cd efflux s 36.5 3.4E+02 0.0074 24.9 14.1 72 34-111 30-104 (296)
322 TIGR02230 ATPase_gene1 F0F1-AT 34.0 2E+02 0.0043 21.5 6.4 17 81-97 59-76 (100)
323 PRK03612 spermidine synthase; 33.9 5E+02 0.011 26.1 15.3 17 66-82 56-72 (521)
324 PHA03237 envelope glycoprotein 32.9 4.4E+02 0.0095 25.6 9.6 10 136-145 271-280 (424)
325 TIGR01666 YCCS hypothetical me 32.2 4.5E+02 0.0098 27.6 10.5 53 82-134 41-98 (704)
326 TIGR02230 ATPase_gene1 F0F1-AT 32.1 2.2E+02 0.0047 21.3 6.8 32 161-192 52-87 (100)
327 TIGR01667 YCCS_YHJK integral m 31.9 5E+02 0.011 27.3 10.8 53 82-134 41-98 (701)
328 PF02694 UPF0060: Uncharacteri 31.0 2E+02 0.0043 21.7 5.5 50 354-403 54-103 (107)
329 COG1742 Uncharacterized conser 31.0 54 0.0012 24.4 2.6 52 62-113 53-104 (109)
330 COG2233 UraA Xanthine/uracil p 31.0 5.2E+02 0.011 25.4 10.8 99 55-153 40-142 (451)
331 COG2119 Predicted membrane pro 30.1 3.4E+02 0.0073 22.9 9.9 54 55-108 125-178 (190)
332 PF01528 Herpes_glycop: Herpes 30.0 2.1E+02 0.0045 27.3 6.9 10 136-145 254-263 (374)
333 PTZ00101 rhomboid-1 protease; 29.1 3.5E+02 0.0075 24.6 8.1 36 75-110 119-155 (278)
334 PF09527 ATPase_gene1: Putativ 28.9 1.6E+02 0.0035 18.8 6.0 34 72-105 8-42 (55)
335 PF07760 DUF1616: Protein of u 28.3 3.9E+02 0.0085 24.3 8.5 55 120-174 22-76 (287)
336 PF11151 DUF2929: Protein of u 27.6 1.8E+02 0.004 19.0 5.9 43 163-205 13-55 (57)
337 PF10785 NADH-u_ox-rdase: NADH 27.0 2.4E+02 0.0052 20.3 5.4 39 78-116 32-77 (86)
338 TIGR03173 pbuX xanthine permea 25.8 6E+02 0.013 24.4 11.9 101 52-152 15-117 (406)
339 PF06123 CreD: Inner membrane 24.9 6.6E+02 0.014 24.5 10.7 72 82-156 309-385 (430)
340 COG4769 Predicted membrane pro 24.1 1.2E+02 0.0026 24.8 3.7 50 73-128 82-131 (181)
341 PF10183 ESSS: ESSS subunit of 24.1 2.1E+02 0.0045 21.5 4.9 30 176-205 54-84 (105)
342 PF04281 Tom22: Mitochondrial 23.8 2E+02 0.0043 22.9 4.8 24 141-164 60-83 (137)
343 PRK02237 hypothetical protein; 23.7 3.3E+02 0.0071 20.6 6.5 48 356-403 58-105 (109)
344 PHA03242 envelope glycoprotein 22.5 5.9E+02 0.013 24.7 8.5 11 150-160 286-296 (428)
345 PF04226 Transgly_assoc: Trans 22.2 2.1E+02 0.0046 17.9 4.7 19 365-383 2-20 (48)
346 COG3202 ATP/ADP translocase [E 22.0 8E+02 0.017 24.5 18.1 75 125-199 292-369 (509)
347 PF09605 Trep_Strep: Hypotheti 21.9 4.8E+02 0.01 21.9 12.7 56 70-128 34-89 (186)
348 PF07556 DUF1538: Protein of u 21.5 5.4E+02 0.012 22.3 10.0 71 115-188 60-133 (212)
349 PF11298 DUF3099: Protein of u 21.5 2E+02 0.0043 20.0 3.9 30 88-117 11-40 (73)
350 PF06341 DUF1056: Protein of u 20.5 1.4E+02 0.003 20.0 2.8 35 116-150 27-61 (63)
No 1
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=1.6e-37 Score=312.22 Aligned_cols=408 Identities=25% Similarity=0.452 Sum_probs=304.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh
Q 013655 15 DEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR 94 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r 94 (439)
++..++.+.++++|.+++++.++.+..++....++..+|.+.++++++..+.+++.+++.++.+++++++|+++||+|||
T Consensus 153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 33445667788899988888888888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 95 KGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
++++++.++.+++.++.+++++++.++++|++.|++.|.. ++..+++.|++|+++||+.+++...+..+|.++++.++.
T Consensus 233 ~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 233 QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 788899999999999999999999999999999998887
Q ss_pred Hhhcc-------------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCcc
Q 013655 174 LVMPR-------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS 240 (439)
Q Consensus 174 ~l~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (439)
.+... .+||..+++.+++.++.+++.+++||+|+|...+++.+++.+.++++.+.++..... . .
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~--~-~ 389 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGH--P-E 389 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCc--h-h
Confidence 66543 358999998888888887788889999999998999899988888876544321100 0 0
Q ss_pred chhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccc-cchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH
Q 013655 241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSED-STSTLANSNMGGITALLILLSPELIKSTLLLWLVFF 319 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 319 (439)
.....++.+.. + .+++. .+.+ +....... .....+......|.+++.++++++++.++++++.|+
T Consensus 390 -~~~~~~~~~~~-~--~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf 455 (742)
T TIGR01299 390 -KVFSVNHIKTI-H--QEDEL-----IEIE-----SDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWF 455 (742)
T ss_pred -HHHHHHHHHHh-h--hhhhh-----hccc-----ccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 00000000000 0 00000 0000 00000000 000011112233456888999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhhcCC---C-----------------------------------------------------ccc
Q 013655 320 GNAFSYYGLVLLTTELNNGQ---N-----------------------------------------------------KCV 343 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~---~-----------------------------------------------------~~~ 343 (439)
+..+.||++..|.|.+.... . .|.
T Consensus 456 ~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (742)
T TIGR01299 456 TLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECT 535 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccc
Confidence 99999999999999764220 0 000
Q ss_pred cccc----------------------------------------ccCCCC---------CCchhhHHHHhhhhhhHHHHH
Q 013655 344 SNEL----------------------------------------QSGKSR---------DINYGDVFITSFAEFPGLLLA 374 (439)
Q Consensus 344 ~~~~----------------------------------------~~g~~~---------~~~~~~~~~~~i~~~~g~~~~ 374 (439)
.... ..|-+. ...+....+.+++.++|.+++
T Consensus 536 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~ 615 (742)
T TIGR01299 536 FDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVS 615 (742)
T ss_pred eeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 011444667778899999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 375 AAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 375 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
|+++||+|||+++.++.++.+++.+++.+.++....+++.++.+++.++.++..+++++|++|++
T Consensus 616 g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~ 680 (742)
T TIGR01299 616 ALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD 680 (742)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 99999999999999999999998887777666555555666777777788888999999999964
No 2
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=6e-36 Score=263.87 Aligned_cols=394 Identities=45% Similarity=0.734 Sum_probs=330.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 013655 14 VDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~ 93 (439)
.+++....++.+++|...+....++....+.....+.+.|...+.+|.+..+..++......+..+++..+|.++|++||
T Consensus 63 v~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr 142 (528)
T KOG0253|consen 63 VDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR 142 (528)
T ss_pred ehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence 45666778899999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 94 RKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 94 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
|+...+..+..++..++...++|+..+++.|.+.|+|.|+.|+..++-.|..|..+|+..+-.. ..+.+|.++...++.
T Consensus 143 r~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law 221 (528)
T KOG0253|consen 143 RKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW 221 (528)
T ss_pred chhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888889999999999999887777 999999999999999
Q ss_pred HhhcccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccC
Q 013655 174 LVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLS 253 (439)
Q Consensus 174 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (439)
.++.++|||+.+...+++..+..+..+++||+|++...+++++++.+.++++.+.|+.+.|.+......+.+.++++
T Consensus 222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~--- 298 (528)
T KOG0253|consen 222 GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEE--- 298 (528)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhh---
Confidence 99999999999999888888888889999999999999999999999999999999988776544322211111110
Q ss_pred CCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 013655 254 SSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 333 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
++-+ +.+.++.++.+. ...+++++..++.+++.+..||.+.+.||+......
T Consensus 299 --~~~~-----------------------~~~~~a~ke~rg---~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLltt 350 (528)
T KOG0253|consen 299 --SDLD-----------------------DSKSSAAKEVRG---GTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTT 350 (528)
T ss_pred --hchh-----------------------hhhhcccccccc---chHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0000 000111111111 677899999999999999999999999999998887
Q ss_pred HhhcCCCccccc----c--cc----cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 013655 334 ELNNGQNKCVSN----E--LQ----SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF 403 (439)
Q Consensus 334 ~~~~~~~~~~~~----~--~~----~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 403 (439)
.+.+....|... + .+ ...+.+..+....+..+...+|.++.++++||+|||++|..++++++++.+.+..
T Consensus 351 elfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~ 430 (528)
T KOG0253|consen 351 ELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT 430 (528)
T ss_pred HHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 776543322111 1 11 1234444577788888999999999999999999999999999999999999988
Q ss_pred ccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 404 QQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.+.....++.+...++.++.+.+.|+|+.|++|+.
T Consensus 431 c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 431 CKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred hcCcchhHHHHHHHHHHHhchheEEEEecCcccchh
Confidence 887777778888899999999999999999999973
No 3
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-33 Score=252.48 Aligned_cols=346 Identities=21% Similarity=0.219 Sum_probs=274.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655 22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA 101 (439)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 101 (439)
..+++|+++++.+.+++...++.+-..+...|.+.++.++|.+|.|++.+.+.+.+.++..+.|.++||.++|+.+.+++
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH--HHhhcc
Q 013655 102 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA--WLVMPR 178 (439)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~--~~l~~~ 178 (439)
+++++..++++++++.+.+.++.++.|...|.. |++...++.|+++++||+..++.+.+.++|+.+.|++. +++..+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 89999999999999999999999999999999999999 889888
Q ss_pred cchhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655 179 LGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN 257 (439)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
.+||..|++.++++++..+. ++..+++|+..--. ..++ .+
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~-------~~------------------------------- 222 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEE-------YR------------------------------- 222 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHH-------hh-------------------------------
Confidence 89999999999888876554 56667776421100 0000 00
Q ss_pred CCCCchhhhcccCCch-hHhhhccccccchhhccccchhH-HHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655 258 EDDTTPKEMARDEDSI-SEAKEMKSEDSTSTLANSNMGGI-TALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL 335 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (439)
+++.+. +++++++ ..+.+ .-.+.++++ +..|.+++......+.-|++..|.|.|
T Consensus 223 ----------~d~~e~~~~~~~~~-----------~ls~~~i~~~YVL~N---k~iW~la~a~vfvYivR~gi~dW~p~Y 278 (448)
T COG2271 223 ----------GDPLEIYEEEKENE-----------GLTAWQIFVKYVLKN---KLIWLLALANVFVYVVRYGINDWGPLY 278 (448)
T ss_pred ----------cCchhhhhhhccCC-----------CccHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 000000 0000000 00000 023334444 445677777777788889999999999
Q ss_pred hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh--hhHHHHH-HHHHHHHHHHHHHhhcccc--chh
Q 013655 336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMS-SMFFCCCIFLVPLLFQQPK--GLT 410 (439)
Q Consensus 336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~-~~~~~~~~~~~~~~~~~~~--~~~ 410 (439)
..+. .+++...+....+++-+++++|.+++||++||+ |||..+. ++.+...++.+.+...++. ++.
T Consensus 279 L~e~---------k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~ 349 (448)
T COG2271 279 LSEV---------KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLD 349 (448)
T ss_pred HHHh---------cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 9774 568888889999999999999999999999996 6776554 4555555566666665544 666
Q ss_pred hhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 411 TGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 411 ~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
.++++++|+...+...+.-....|..|++
T Consensus 350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~ 378 (448)
T COG2271 350 AILLFIIGFLIYGPQMLIGLAAAEFVPKK 378 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccHh
Confidence 77788888888777777777777777753
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=1.2e-31 Score=265.35 Aligned_cols=364 Identities=21% Similarity=0.312 Sum_probs=255.5
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013655 18 IVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW-----HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG 92 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G 92 (439)
.++.+..++++..+.++.++.+..+++....+...|.+.+++ +.+..+.+++.+...++..++++++|+++||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G 84 (502)
T TIGR00887 5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG 84 (502)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355677888898898899999999999999999888876642 345667899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHH
Q 013655 93 RRKGFLITAIVTSAAGLLSAFAPN------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT 165 (439)
Q Consensus 93 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 165 (439)
||+++.++.++..++.++.+++++ ++.++++|++.|++.|.. +....++.|++|+++||+++++.+.+..+|.
T Consensus 85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999888888765 788999999999999998 7788999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-----------------------ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHH-HHHH
Q 013655 166 ILEAGIAWLVMP-----------------------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAE-ARHV 221 (439)
Q Consensus 166 ~i~~~l~~~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 221 (439)
.+++.++.++.. .++||..+.+.+++.++..+..+++||+|+|...+++.++ +.+.
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 999988776532 2479999998888888877778889999999877666543 4433
Q ss_pred HHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHH
Q 013655 222 LEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI 301 (439)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (439)
..+..+.+.. +. .++.++ .++++ + . ...++++
T Consensus 245 ~~~~~~~~~~---~~------~~~~~~------------------------~~~~~--~----------~---~~~~~~~ 276 (502)
T TIGR00887 245 MSAVLQVKIE---AE------PDEVEK------------------------ASTAV--E----------V---PKASWSD 276 (502)
T ss_pred HHHHhccccc---cC------cccccc------------------------hhccc--c----------c---hhhhHHH
Confidence 3333211000 00 000000 00000 0 0 0014555
Q ss_pred hhCh----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc------------hhhHHHHhh
Q 013655 302 LLSP----ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN------------YGDVFITSF 365 (439)
Q Consensus 302 l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------~~~~~~~~i 365 (439)
++++ +.++.++.....+++..+.+|+...+.|.+..+.+ .+...+ .....+..+
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (502)
T TIGR00887 277 FFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIG----------YSPPAATNNAYEELYKTAVGNLIIALA 346 (502)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHc----------CCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 5532 23344444455566666777887777777764432 332211 112334455
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc---ccchhhhHHHH-HHhhhhheeeeeeeeccccccCC
Q 013655 366 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ---PKGLTTGLLFG-ARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 366 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.+++.++.++++||+|||++++.+.++++++.+++.... +........++ ..++..+..+..+.+.+|++|++
T Consensus 347 ~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~ 424 (502)
T TIGR00887 347 GTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR 424 (502)
T ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh
Confidence 6778999999999999999998888877776655444321 11111122222 22223345677888899999975
No 5
>TIGR00895 2A0115 benzoate transport.
Probab=100.00 E-value=1.4e-30 Score=250.71 Aligned_cols=359 Identities=24% Similarity=0.332 Sum_probs=256.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655 22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA 101 (439)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 101 (439)
..+++++..+....+.++..++......+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 34556666677777777777888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 102 IVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
++.+++.++..+.++++.+++.+++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++++.+..|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999988 7778999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHH-HHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCC
Q 013655 181 WRWLLGLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 259 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
|+..+++.++..++. .+...++|++++....+ +.++..+..++.......+. +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------~ 223 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-------------------------Q 223 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-------------------------c
Confidence 999998886554444 44456677776443222 11221211111111000000 0
Q ss_pred CCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 013655 260 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQ 339 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (439)
. . .+ ++++.. +. .....+.+++++..+..+..++..++....++....+.|.+..+
T Consensus 224 ~-~------~~----~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (398)
T TIGR00895 224 S-A------LP----EQKATQ---------GT---KRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE- 279 (398)
T ss_pred c-c------cc----cccccc---------ch---hhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 0 0 00 000000 00 00123334444444555555555555556666666666755433
Q ss_pred CcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHh
Q 013655 340 NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI 419 (439)
Q Consensus 340 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (439)
.+.+....+.......++.++++++.+++.||+|||..+...........+......+.+......++.|+
T Consensus 280 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 350 (398)
T TIGR00895 280 ---------LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF 350 (398)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 33666666788888889999999999999999999855444443333333333324455556667778888
Q ss_pred hhhheeeeeeeeccccccCC
Q 013655 420 CITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 420 ~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.+...+..+++.+|.+|++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~ 370 (398)
T TIGR00895 351 FVNGGQSGLYALMALFYPTA 370 (398)
T ss_pred HHHHHHHHHHHHHhhcCCHH
Confidence 88888888999999998863
No 6
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=1.1e-30 Score=252.20 Aligned_cols=330 Identities=22% Similarity=0.234 Sum_probs=252.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
.++++|.++.+.++..+..+++....+...|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 34577888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 103 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
+.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW 168 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 99999888889999999999999999998887 77778999999999999999999999999999999999998888999
Q ss_pred hHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCC
Q 013655 182 RWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD 260 (439)
Q Consensus 182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
+..|++.+++.++..+ ...++||++++...+.+.++.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 208 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP---------------------------------------- 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh----------------------------------------
Confidence 9999887766555544 34556776432111000000000
Q ss_pred CchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 013655 261 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN 340 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (439)
..+.+++++..+.....+..++.....++....|.|.+..+
T Consensus 209 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-- 249 (406)
T PRK11551 209 -------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-- 249 (406)
T ss_pred -------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 01111111111122222333333444455566667777644
Q ss_pred cccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhh
Q 013655 341 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARIC 420 (439)
Q Consensus 341 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 420 (439)
.|.+....+.......++.++++++.|++.||+|||+.+..+.+..+++.+.+...++.+...+..++.+++
T Consensus 250 --------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 250 --------QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred --------CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 336666778888888899999999999999999999998887777666666665555555555566667777
Q ss_pred hhheeeeeeeeccccccCC
Q 013655 421 ITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 421 ~~~~~~~~~~~~~e~~p~~ 439 (439)
.++..+..+++..|.+|++
T Consensus 322 ~~~~~~~~~~~~~~~~p~~ 340 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQ 340 (406)
T ss_pred HHhHHHHHHHHHHHHcchh
Confidence 7777788888888888864
No 7
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=2.5e-30 Score=249.41 Aligned_cols=353 Identities=16% Similarity=0.180 Sum_probs=242.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
|.+|..+..+++.+++++++....++..|.+.+++|+|..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 013655 105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------ 177 (439)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~------ 177 (439)
+++.++.+++++++.+++.|++.|++.+.. +....++.|++|+++|++++++++.+.++|..+++++++++.+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999988 6667889999999999999999999999999999999998864
Q ss_pred ccchhHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655 178 RLGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 256 (439)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (439)
..|||..|++.+++.++..+ .++++||+|+... .-.+++++..++..+.+..+. ++.+
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~-------------~~~~------ 222 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK--WLDEEDKKALKEMIDNDQLTL-------------EQPE------ 222 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC--CCCHHHHHHHHHHHHhccccc-------------cccc------
Confidence 46999999998877766544 4566788764210 001111111111100000000 0000
Q ss_pred CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655 257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 336 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (439)
+ +.+ ++ .......++.++++. ++...+.+++....++....|.|.+.
T Consensus 223 -------~---~~~------~~-------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l 269 (412)
T TIGR02332 223 -------G---AFA------HA-------------AMPQRSMLREIFTPA----IMLYTLAYFCLTNTLSAINIWTPQIL 269 (412)
T ss_pred -------c---ccc------cc-------------cccHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 00 000001344455432 34455555666667777888888888
Q ss_pred cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhccccchhhhHHH
Q 013655 337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLS-MSSMFFCCCIFLVPLLFQQPKGLTTGLLF 415 (439)
Q Consensus 337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (439)
.+.+ .+.+...++.......++.++|+++.|+++||++||+. ......+.++.++......+.........
T Consensus 270 ~~~~--------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (412)
T TIGR02332 270 QSFN--------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGII 341 (412)
T ss_pred HhcC--------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5421 23455556777888889999999999999999997664 33344344433322222222222222222
Q ss_pred HHHhhhhheeeeeeeeccccccCC
Q 013655 416 GARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 416 ~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.+++.....+..++...|.+|++
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~ 365 (412)
T TIGR02332 342 MASMGSFSAMAIFWTTPDQSISLQ 365 (412)
T ss_pred HHHHHhhhhhhHHHhhcccccchH
Confidence 223333333344445556677653
No 8
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=4.3e-30 Score=247.97 Aligned_cols=351 Identities=20% Similarity=0.277 Sum_probs=244.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
.++++|+.+..+.++++..++.....++..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-
Q 013655 103 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG- 180 (439)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g- 180 (439)
+.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999988 7777899999999999999999999999999999999999888766
Q ss_pred -hhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCC
Q 013655 181 -WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 259 (439)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
||..|++.+++.++..+....+||++.+...+++.++..+ ..++..+++
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------------------------- 215 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRT---MVDILYGGE--------------------------- 215 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhh---HHHHHhccc---------------------------
Confidence 9999988776666665555666776432211100000000 000000000
Q ss_pred CCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 013655 260 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQ 339 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (439)
+..+. ..++.....+... ++.+..+...................+.|.+..+
T Consensus 216 -----------~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 267 (405)
T TIGR00891 216 -----------HRIAN---------------IVMTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA- 267 (405)
T ss_pred -----------hhhhh---------------hhhhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-
Confidence 00000 0000000111100 1111112222222222222233333444544422
Q ss_pred CcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hhccccchhhhHHHHHH
Q 013655 340 NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL-LFQQPKGLTTGLLFGAR 418 (439)
Q Consensus 340 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 418 (439)
+.|.+....+...+...++.++++++.+++.||+|||+.+..+..+.++..+.+ ....+.+...+..++.+
T Consensus 268 --------~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 268 --------DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339 (405)
T ss_pred --------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 134666666777888889999999999999999999998887776654433322 23333333444445566
Q ss_pred hhhhheeeeeeeeccccccCC
Q 013655 419 ICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 419 ~~~~~~~~~~~~~~~e~~p~~ 439 (439)
++.++..+..+.+++|.+|++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~ 360 (405)
T TIGR00891 340 MLVQGIWGILPKHLGEYFPTD 360 (405)
T ss_pred HHHccchhhHHHHHhhhCCcc
Confidence 666666777778888988864
No 9
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.98 E-value=5.4e-30 Score=252.71 Aligned_cols=334 Identities=18% Similarity=0.227 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hHH-----HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655 28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ-ESL-----ITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA 101 (439)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~-----~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 101 (439)
+..+....+++++.+++...+++..|.+.++++.+.+. .++ ..++..++..+++++.|+++||+|||+++.++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566677888999999999999999999998644322 122 247778999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchHHH--------HHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655 102 IVTSAAGLLSAFAPNYYL--------LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA 172 (439)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~ 172 (439)
++++++.++++++++++. ++++|+++|++.|.. +...+++.|++|+++||++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 889999999999998 77789999999999999999999988888888887666
Q ss_pred HHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhh
Q 013655 173 WLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244 (439)
Q Consensus 173 ~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
..+. ..+|||..|++.+++.++..++...+||+|++...+++.++ .+++.
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~----------~~~~~------------ 232 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ----------GDREG------------ 232 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh----------hcccc------------
Confidence 5442 36899999999777666555556667887654311100000 00000
Q ss_pred hhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHh
Q 013655 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++ .+ + .++++++++. ++.+.......++....
T Consensus 233 -~~~--------------------------------~~----------~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 265 (490)
T PRK10642 233 -LQD--------------------------------GP----------K---VSFKEIATKH-WRSLLTCIGLVIATNVT 265 (490)
T ss_pred -ccc--------------------------------cc----------c---CCHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 000 00 0 0344444432 23333333344455667
Q ss_pred hhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-Hh-
Q 013655 325 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP-LL- 402 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~~- 402 (439)
+|....|.|.+.... .|.+............++.+++.++.|+++||+|||+.+..+.++..+..+. +.
T Consensus 266 ~~~~~~~~p~~l~~~---------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 336 (490)
T PRK10642 266 YYMLLTYMPSYLSHN---------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL 336 (490)
T ss_pred HHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888877331 2344444555666677888899999999999999999887776544332222 22
Q ss_pred -hccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 403 -FQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 403 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
...+.....+..++.+++.+...+....+.+|++|++
T Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~ 374 (490)
T PRK10642 337 INSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH 374 (490)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 2222333334445555555555556667778888875
No 10
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.98 E-value=8.2e-30 Score=247.82 Aligned_cols=337 Identities=18% Similarity=0.228 Sum_probs=238.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
++++..+..+.+.++..++......+..|.+.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 56666677788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
+++.++.+++++++.++++|++.|++.+.. +....++.|++|+++|+++.++...+..+|.++++.+.+.+.+.++||.
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~ 173 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA 173 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence 999999999999999999999999999887 7777889999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655 184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 263 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (439)
.|++..+..++........||++++.. + +... +.+ +.
T Consensus 174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~--------~----~~~~--~~~---------------~~-------------- 210 (426)
T PRK12307 174 AFFVGLLPVLLVIYIRARAPESKEWEE--------A----KLSG--KGK---------------HS-------------- 210 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCChHHHH--------h----hhhc--ccc---------------cc--------------
Confidence 998755443333222222333321100 0 0000 000 00
Q ss_pred hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655 264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV 343 (439)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
++.. +.....++++++++..+.........+......+....+.|.+..+
T Consensus 211 ------~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 260 (426)
T PRK12307 211 ------QSAW-------------------SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG----- 260 (426)
T ss_pred ------ccch-------------------hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 0000 0000145556665554444433333333333334445566666543
Q ss_pred ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHh--hh
Q 013655 344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARI--CI 421 (439)
Q Consensus 344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~ 421 (439)
.|.+....+...+...++.++++++.|++.||+|||+.+..+.++.++..+.+....+........++++. ..
T Consensus 261 -----~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (426)
T PRK12307 261 -----EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATN 335 (426)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhc
Confidence 23555566777788889999999999999999999999888887776665544433222222222223332 22
Q ss_pred hheeeeeeeeccccccCC
Q 013655 422 TVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 422 ~~~~~~~~~~~~e~~p~~ 439 (439)
.+..+..+.++.|.+|++
T Consensus 336 ~~~~~~~~~~~~~~~p~~ 353 (426)
T PRK12307 336 VGVGGLVPKFLYDYFPLE 353 (426)
T ss_pred ccHhHHHHHHHHHhCcHH
Confidence 233344556678888863
No 11
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=233.65 Aligned_cols=318 Identities=21% Similarity=0.245 Sum_probs=245.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655 26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS 105 (439)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 105 (439)
..+..++.+.++.|..+...+.+..++|.+.+++|+|....|++.++|.++..+++++...++||+.||++++....++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34555667777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655 106 AAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~ 184 (439)
++.++.++++||+.++++|++.|+..|.. +...+...+..|+++|++++++...+..++.++|.+++.++.|.+|||..
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999 77789999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655 185 LGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 263 (439)
Q Consensus 185 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (439)
|++.+++.++..+. +..+| |+... +.+..+.
T Consensus 170 F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~~~~~--------------------------------------------- 201 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLP--PSEIS-GSLPGPL--------------------------------------------- 201 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CccCC-CCCCcch---------------------------------------------
Confidence 99999888887665 56677 11000 0000000
Q ss_pred hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655 264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV 343 (439)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
.....+++++..+......++++...+. ..++..|.+.+.
T Consensus 202 ---------------------------------~~~~~~l~~p~v~~~l~~t~l~~~g~F~--~ftYi~P~L~~v----- 241 (394)
T COG2814 202 ---------------------------------RTLLRLLRRPGVLLGLLATFLFMTGHFA--LYTYIRPFLESV----- 241 (394)
T ss_pred ---------------------------------hHHHHHhcCchHHHHHHHHHHHHcchhh--hHHhHHHHHHHc-----
Confidence 0122234443333333333333332222 223334444332
Q ss_pred ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhhh
Q 013655 344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICIT 422 (439)
Q Consensus 344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 422 (439)
.|++.+...+....++++.++|.+++|++.|| +.|+.+.....+.++..+.+.+..+ .+...+..++.|+...
T Consensus 242 -----~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~ 315 (394)
T COG2814 242 -----AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFS 315 (394)
T ss_pred -----cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 44777777999999999999999999999999 8888888887777777776665544 4445555566666666
Q ss_pred heeeeeeeecccccc
Q 013655 423 VTFTVVYVYAPEVSH 437 (439)
Q Consensus 423 ~~~~~~~~~~~e~~p 437 (439)
.......+..++..|
T Consensus 316 ~~~~~~~~~~a~~~p 330 (394)
T COG2814 316 PALQGLQTRLARLAP 330 (394)
T ss_pred hhhhHHHHHhcccCC
Confidence 555555555555444
No 12
>TIGR00898 2A0119 cation transport protein.
Probab=99.97 E-value=2.4e-30 Score=257.01 Aligned_cols=326 Identities=36% Similarity=0.642 Sum_probs=250.2
Q ss_pred HHHHHHhhhcCCC---chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 013655 50 FVGPAVQSLWHLS---PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126 (439)
Q Consensus 50 ~~~~~~~~~~~~s---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (439)
...+.+.++++++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4567788999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
.|++.+.. +....++.|++|+++|+++.++...+..+|.++++.++..+.+ ||..+++.+++.++..+..+++||+
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999997 7788999999999999999999999999999999998877643 9999999998888877777889999
Q ss_pred chhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccc
Q 013655 206 PRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDST 285 (439)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (439)
|++...+++.+++.+..++..+.++.+.+.+ ..+. + .+++.+.+++
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~--------~~~~---------------------~--~~~~~~~~~~--- 312 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPAE--------VLSL---------------------S--LEKDLSSSKK--- 312 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH--------HHhh---------------------h--hhhhhhhccC---
Confidence 9998888888777777776655443211100 0000 0 0000000000
Q ss_pred hhhccccchhHHHHHHhhC-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHh
Q 013655 286 STLANSNMGGITALLILLS-PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITS 364 (439)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 364 (439)
..+++++++ ++.++.++..++.++.....+|+...+.+.+. .+ ......+.+
T Consensus 313 ----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~ 365 (505)
T TIGR00898 313 ----------QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG--------------GN---IYLDLFISG 365 (505)
T ss_pred ----------CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC--------------CC---hHHHHHHHH
Confidence 014566775 44455555666667777777777666554322 11 245556677
Q ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccc--chhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPK--GLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 365 i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+..+++.++.++++||+|||+.+..+.++.+++.+.+.+.++. +......++.+++.+..++..+++.+|++|++
T Consensus 366 ~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 8889999999999999999999999998888887777665443 33444555666777777888889999999963
No 13
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.97 E-value=1.7e-29 Score=238.93 Aligned_cols=305 Identities=14% Similarity=0.063 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655 41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL 120 (439)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
+...+..+++..|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34456677889999999999999999999999999999999999999999999988766555554444333333789999
Q ss_pred HHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH-HH
Q 013655 121 LFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL-LY 199 (439)
Q Consensus 121 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~-~~ 199 (439)
++.|++.|++.+...+....+.|++|+++|++++++.+.+..+|..+++++++++.+.+|||..|++.+++.++..+ .+
T Consensus 83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999866555666799999999999999999999999999999999999999999999997777666544 45
Q ss_pred hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655 200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM 279 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (439)
+++||+|++.. +..+.. +
T Consensus 163 ~~lp~~p~~~~---~~~~~~----~------------------------------------------------------- 180 (368)
T TIGR00903 163 AALPALPFQAA---EGFGFK----D------------------------------------------------------- 180 (368)
T ss_pred HHcCCCCCCCC---CCcchH----H-------------------------------------------------------
Confidence 66787754210 000000 0
Q ss_pred cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhh
Q 013655 280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD 359 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 359 (439)
....++++++++. ++...+.+++....+|+...|.|.+..+. +++.. .+..
T Consensus 181 ---------------~~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~L~~~----------g~s~~-~~~~ 231 (368)
T TIGR00903 181 ---------------AVKEFGALAGRKD---LWIIGAILGFGVALFDNLAIWLEAALRPA----------GLEDI-AGDA 231 (368)
T ss_pred ---------------HHHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCChH-HHHH
Confidence 0003455665533 35555667777778888889999998542 24433 3334
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhH---HH-HHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655 360 VFITSFAEFPGLLLAAAMVDRLGRK---LS-MSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV 435 (439)
Q Consensus 360 ~~~~~i~~~~g~~~~g~l~dr~grr---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~ 435 (439)
..+..+ .|.+..++++||..|| +. ......+.++..+.+....+.........+.+++....++..+++.+|.
T Consensus 232 ~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (368)
T TIGR00903 232 VALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKF 308 (368)
T ss_pred HHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 444444 4444457888887543 33 2223444444444444444444444455566677777777788899999
Q ss_pred ccCC
Q 013655 436 SHRS 439 (439)
Q Consensus 436 ~p~~ 439 (439)
+|++
T Consensus 309 ~p~~ 312 (368)
T TIGR00903 309 CDKE 312 (368)
T ss_pred cchh
Confidence 9975
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.97 E-value=3.5e-29 Score=243.35 Aligned_cols=323 Identities=20% Similarity=0.282 Sum_probs=218.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCchhhHH---HHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 013655 26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWH---LSPNQESL---ITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI 99 (439)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~---~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 99 (439)
+++..+....+++++..++...+++..|.+.++++ .+..+.+. +.++..++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34455666677888999999999999999999984 45554444 4445555556999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 013655 100 TAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAG 170 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~ 170 (439)
+.++++++.+++++++++. .++++|+++|++.|.. +...+++.|++|+++||++.++...+...|..+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988763 5889999999999988 778899999999999999999998888888888877
Q ss_pred HHHHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccch
Q 013655 171 IAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDW 242 (439)
Q Consensus 171 l~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
+...+. +.+|||..|++.+++.++...+...+||++++.. + +. ++
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~----~~-----~~---------- 231 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R----AL-----KE---------- 231 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h----hh-----cc----------
Confidence 655443 2579999999888877665544444555432100 0 00 00
Q ss_pred hhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 013655 243 EHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNA 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (439)
+ .+++++++++..+ .......+...
T Consensus 232 --------------------------------------------------~---~~~~~l~~~~~~~--~~~~~~~~~~~ 256 (432)
T PRK10406 232 --------------------------------------------------A---GSLKGLWRNRRAF--IMVLGFTAAGS 256 (432)
T ss_pred --------------------------------------------------c---ccHHHHHhhHHHH--HHHHHHHHHHH
Confidence 0 0344455433222 22222223335
Q ss_pred HhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 013655 323 FSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL 402 (439)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 402 (439)
..+|....|.|.+..+. .|.+....+....+..+...++.++.|+++||++||+.+..+.++.++....+.
T Consensus 257 ~~~~~~~~~lp~~l~~~---------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 327 (432)
T PRK10406 257 LCFYTFTTYMQKYLVNT---------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPIL 327 (432)
T ss_pred HHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 56677777888776431 235554556666676777788889999999999999887766554433322121
Q ss_pred --hc--cccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 403 --FQ--QPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 403 --~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
.. .+....+.+..+..++.+...+..+.+.+|.+|++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~ 368 (432)
T PRK10406 328 SALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ 368 (432)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 11 12222222222222333333345667889999975
No 15
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.97 E-value=3.9e-29 Score=246.81 Aligned_cols=356 Identities=20% Similarity=0.258 Sum_probs=239.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 013655 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW--------HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK 95 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~ 95 (439)
.+++.+..++..++.+..+++...+++..|.+.+++ +.+..+.+++.+.+.++..++++++|+++||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 455666777777888888888888888888888776 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc------------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHH
Q 013655 96 GFLITAIVTSAAGLLSAFA------------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWT 162 (439)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~ 162 (439)
+++++.++.+++.++.++. +.++.++++|++.|++.|.. +...+++.|++|+++||+++++.+.+..
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999988887776652 22567789999999999998 7788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCC
Q 013655 163 VGTILEAGIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP 234 (439)
Q Consensus 163 ~g~~i~~~l~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (439)
+|..+++.++..+. +.+|||..|++.+++.++..+..+++||+|++...+++.+++++..++..+ ..
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~---~~-- 241 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG---NT-- 241 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcC---Ch--
Confidence 99999887766543 457899999988888777766677889998776555554444333332211 00
Q ss_pred CCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHH
Q 013655 235 SGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 314 (439)
+.+...++ ..+....+. . ..+.++.-.........
T Consensus 242 ------~~~~~~~~------------------------~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~ 276 (479)
T PRK10077 242 ------LATQALQE------------------------IKHSLDHGR-----------K----TGGKLLMFGVGVIVIGV 276 (479)
T ss_pred ------hHHHHHHH------------------------HHHHHHHhh-----------h----hhhhhcchhHHHHHHHH
Confidence 00000000 000000000 0 00011110000111111
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013655 315 WLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC 394 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 394 (439)
....+.....++...++.|.+..+ .|.+...........++..+++.+++++++||+|||+.+..+.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~p~i~~~----------~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~ 346 (479)
T PRK10077 277 MLSVFQQFVGINVVLYYAPEIFKT----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM 346 (479)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHH----------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHH
Confidence 111222222333444555655433 2355444566666778888999999999999999999999999888
Q ss_pred HHHHHHHhhc--ccc-c-hhhhHHHHHHhhhhh-eeeeeeeeccccccCC
Q 013655 395 CIFLVPLLFQ--QPK-G-LTTGLLFGARICITV-TFTVVYVYAPEVSHRS 439 (439)
Q Consensus 395 ~~~~~~~~~~--~~~-~-~~~~~~~~~g~~~~~-~~~~~~~~~~e~~p~~ 439 (439)
+++.+.+... .+. . ......++++++.+. ..|..+++++|.+|++
T Consensus 347 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 396 (479)
T PRK10077 347 AIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396 (479)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence 8877665432 121 1 222233344444433 3367789999999864
No 16
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.97 E-value=6.3e-30 Score=250.95 Aligned_cols=350 Identities=13% Similarity=0.075 Sum_probs=236.7
Q ss_pred HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 013655 19 VTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL 98 (439)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~ 98 (439)
.+....+..+.++..+.++++.....+...+...|.+.+++|+|..+.|++.+++.+++.+++++.|+++||+|||+++.
T Consensus 19 ~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~ 98 (467)
T PRK09556 19 QRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLP 98 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHH
Confidence 33345566777888888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhh-----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655 99 ITAIVTSAAGLLSAF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA 172 (439)
Q Consensus 99 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~ 172 (439)
.+.++++++.++.++ +++++.+++.|++.|++.+.. +...+++.+++|+++||+++|+...+.++|.++++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 99 FLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 888887777665554 589999999999999999888 77778999999999999999999999999999999998
Q ss_pred HHhhccc---chhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhh
Q 013655 173 WLVMPRL---GWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQN 248 (439)
Q Consensus 173 ~~l~~~~---g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (439)
.++.+.. +|+..|.+.+++.++..++ +++.+++|+..... .++ +. . . +.. .+
T Consensus 179 ~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~--~~~--~~---~-~---~~~-------------~~ 234 (467)
T PRK09556 179 LWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG--KAE--EI---F-G---EPI-------------SE 234 (467)
T ss_pred HHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC--Chh--hc---c-c---Ccc-------------ch
Confidence 8776643 6999888877776655444 44445554211000 000 00 0 0 000 00
Q ss_pred ccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHH-HHhhChHHHHHHHHHHHHHHHHHHhhhH
Q 013655 249 KSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL-LILLSPELIKSTLLLWLVFFGNAFSYYG 327 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
+++.+.+++ .+....+ +..++++ .++..++..++....+++
T Consensus 235 -------------------------~~~~~~~~~----------~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 276 (467)
T PRK09556 235 -------------------------EDKETESTD----------MTKWQIFVEYVLKNP---VIWLLCFANIFLYIVRIG 276 (467)
T ss_pred -------------------------hhhcccccc----------CcHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHH
Confidence 000000000 0000011 1233333 234444555555556667
Q ss_pred HHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--Hhhcc
Q 013655 328 LVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP--LLFQQ 405 (439)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~--~~~~~ 405 (439)
...|.|.|..+. .|.+...++...+...++.++|++++|+++||++||+.+.....+..+.... +...+
T Consensus 277 ~~~~~p~yl~~~---------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 347 (467)
T PRK09556 277 IDNWSPVYAFQE---------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHAT 347 (467)
T ss_pred HHHHHHHHHHHc---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 778888777432 3466666677778888899999999999999999888766554443333222 22222
Q ss_pred ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 406 PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.+...+..++.|++..+..........|.+|++
T Consensus 348 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~ 381 (467)
T PRK09556 348 SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK 381 (467)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh
Confidence 3333334455555443332222234556887763
No 17
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.97 E-value=9.9e-29 Score=243.62 Aligned_cols=358 Identities=24% Similarity=0.288 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--------chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSLWHLS--------PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
++.++.+...+.........+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~ 111 (481)
T TIGR00879 32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF 111 (481)
T ss_pred HHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHH
Confidence 333444555666667777778887777766 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc---chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH---HHhhc
Q 013655 105 SAAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA---WLVMP 177 (439)
Q Consensus 105 ~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~---~~l~~ 177 (439)
+++.++..+. .+++.+++.|++.|++.+.. +....++.|++|+++|++++++.+.+..+|..+++.++ ....+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 191 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN 191 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9888887554 34568999999999999988 66778999999999999999999999999999999999 66667
Q ss_pred ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655 178 RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN 257 (439)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
..+||..|++.++..++..+..+++||+|++...+++.++..+..++.. +.+.+ ..+..+..+.
T Consensus 192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~--------- 255 (481)
T TIGR00879 192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR---GTSGE----DKELLDELEL--------- 255 (481)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHh---CCCCC----cHHHHHHHHH---------
Confidence 7899999999777777666667778988765444433333222221111 00000 0000000000
Q ss_pred CCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655 258 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN 337 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (439)
. +...+.+. +..+..+......+++...+.++..++.++...........+.+.+..
T Consensus 256 -----------~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (481)
T TIGR00879 256 -----------I--DIKRSIEK----------RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312 (481)
T ss_pred -----------H--HHHHHHHH----------hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH
Confidence 0 00000000 000011112333332222333344444444444434444455555543
Q ss_pred CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---cc-c------c
Q 013655 338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF---QQ-P------K 407 (439)
Q Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~-~------~ 407 (439)
+ .|.+............++.++++++.|+++||+|||+.+..+.++++++.+.+.+ .. + .
T Consensus 313 ~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 313 N----------AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred H----------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 3 3366656677888888899999999999999999999988887777776665541 11 1 1
Q ss_pred chhhhHHHHHHhhh-hheeeeeeeeccccccCC
Q 013655 408 GLTTGLLFGARICI-TVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 408 ~~~~~~~~~~g~~~-~~~~~~~~~~~~e~~p~~ 439 (439)
........+.+.+. .+..+....++.|.+|++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 22222222333333 233467777889998863
No 18
>PRK03545 putative arabinose transporter; Provisional
Probab=99.97 E-value=1.6e-28 Score=235.81 Aligned_cols=315 Identities=15% Similarity=0.099 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Q 013655 28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA 107 (439)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 107 (439)
|..++.+.+..+..........+..|.+.+++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 43344444433443344445566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655 108 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186 (439)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~ 186 (439)
.+.+.++++++.+++.|++.|++.+.. +...+++.+++|+++|++++|+...+.++|..++|++++.+.+.+|||..|+
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 167 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL 167 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence 999999999999999999999998877 6677899999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655 187 LSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE 265 (439)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
+.+++.++..+. ...+|+.++ +++++
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~-----~~~~~------------------------------------------------ 194 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPLLPS-----EHSGS------------------------------------------------ 194 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-----CCcch------------------------------------------------
Confidence 988877665444 333454321 00000
Q ss_pred hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccc
Q 013655 266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSN 345 (439)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (439)
....++.++++..+...... ++....++....+.+.+..+
T Consensus 195 ------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~------- 234 (390)
T PRK03545 195 ------------------------------LKSLPLLFRRPALVSLYLLT---VVVVTAHFTAYSYIEPFVQQ------- 234 (390)
T ss_pred ------------------------------HHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------
Confidence 00222334333332222221 11122222222333333322
Q ss_pred ccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhccccchhhhHHHHHHhhhhhe
Q 013655 346 ELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV-PLLFQQPKGLTTGLLFGARICITVT 424 (439)
Q Consensus 346 ~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~ 424 (439)
+.|.+....+...+..+++.++++++.|++.||++||...... .+..+... .....++.+...+..++.|++....
T Consensus 235 --~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~ 311 (390)
T PRK03545 235 --VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI-ALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCI 311 (390)
T ss_pred --hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcc
Confidence 1346666677788888899999999999999999988754443 33333333 3333444445555666777776555
Q ss_pred eeeeeeeccccccC
Q 013655 425 FTVVYVYAPEVSHR 438 (439)
Q Consensus 425 ~~~~~~~~~e~~p~ 438 (439)
.+.....+.|..|+
T Consensus 312 ~~~~~~~~~~~~~~ 325 (390)
T PRK03545 312 GLAMQVKVLKLAPD 325 (390)
T ss_pred hHHHHHHHHHhCCC
Confidence 55555555565553
No 19
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.97 E-value=2.8e-28 Score=239.20 Aligned_cols=338 Identities=13% Similarity=0.085 Sum_probs=226.3
Q ss_pred HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 013655 19 VTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL 98 (439)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~ 98 (439)
++...++.+++.+......++........+.+..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 26 RLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 33344555566666666777777777778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 013655 99 ITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-- 176 (439)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-- 176 (439)
.+.++++++.++.+++++++.++++|++.|++.+.......++.+++|+++||+++|+.+.+.++|..+++.+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~ 185 (476)
T PLN00028 106 FLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL 185 (476)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988766444567899999999999999998777777777766655432
Q ss_pred --c-----ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhc
Q 013655 177 --P-----RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNK 249 (439)
Q Consensus 177 --~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
+ ..|||..|++.+++.++..+..++++++++ +++.+ +..+. .+.
T Consensus 186 ~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p----~~~~~-------~~~~~-~~~----------------- 236 (476)
T PLN00028 186 IKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP----DGNYR-------ELKKS-GTM----------------- 236 (476)
T ss_pred HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC----CCchh-------hHHhc-Ccc-----------------
Confidence 2 258999999988887776655555543321 00000 00000 000
Q ss_pred cccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHH
Q 013655 250 SLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLV 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
+ + .+....+++.++.+. ++..++.++......+...
T Consensus 237 ------------------------------~--~---------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 272 (476)
T PLN00028 237 ------------------------------P--K---------DSFSKVLRYGVTNYR---TWILALTYGYSFGVELTMD 272 (476)
T ss_pred ------------------------------c--c---------ccHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHH
Confidence 0 0 000012333333322 2233333333333334445
Q ss_pred HHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHh
Q 013655 330 LLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK-------LSMSSMFFCCCIFLVPLL 402 (439)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr-------~~~~~~~~~~~~~~~~~~ 402 (439)
.+.|.+..+ +.|.+...++...++..++.+++++++|+++||++|| .......++.++..+.+.
T Consensus 273 ~~~p~~l~~---------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~ 343 (476)
T PLN00028 273 NIIAEYFYD---------RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG 343 (476)
T ss_pred hHHHHHHHH---------hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc
Confidence 556655532 1346766778888889999999999999999999875 223333333333333333
Q ss_pred hccccchhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655 403 FQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
..++.+...+.+++.+++.+...+..+.+.+++.|.
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 379 (476)
T PLN00028 344 RANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR 379 (476)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh
Confidence 333433344445555665555556666666666553
No 20
>PRK03699 putative transporter; Provisional
Probab=99.97 E-value=3.2e-28 Score=233.86 Aligned_cols=318 Identities=10% Similarity=0.108 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 106 (439)
+++..+..++.++..+......+...|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45556667777888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHH
Q 013655 107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWL 184 (439)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g~~~~ 184 (439)
+.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|+++++..+.+..+|..++|.+.+.+.+ ..|||..
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999999998877 6677888999999999999999999999999999999888764 5799999
Q ss_pred HHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 264 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
|.+.+++.++..++.+. .+.|+. +++.+ +++ +
T Consensus 165 f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~-------------~~~-----------------~-------------- 196 (394)
T PRK03699 165 YACIGLVYVAIFILTLF-SEFPAL---GKHAP-------------KAD-----------------K-------------- 196 (394)
T ss_pred HHHHHHHHHHHHHHHHh-cCCccc---cccCc-------------ccc-----------------C--------------
Confidence 99888776665444332 222110 00000 000 0
Q ss_pred hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655 265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVS 344 (439)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (439)
+ ..+..++ +.++...+..++....++....|.|.+..+.
T Consensus 197 -------------~-------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----- 235 (394)
T PRK03699 197 -------------P-------------------VAKEKWG----IGVLFLAIAALLYILAQLTFISWVPEYAQKK----- 235 (394)
T ss_pred -------------c-------------------cccccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 0 0000001 2223333444444455566677788777432
Q ss_pred cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhhe
Q 013655 345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 424 (439)
Q Consensus 345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 424 (439)
.|.+....+...+...++..+|+++.|+++||++||+.+.....+.++....+...++.....+..++.|++.+..
T Consensus 236 ----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 311 (394)
T PRK03699 236 ----FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAI 311 (394)
T ss_pred ----cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 3467777778888888899999999999999999999888777776666665555555555555667777777777
Q ss_pred eeeeeeecccccc
Q 013655 425 FTVVYVYAPEVSH 437 (439)
Q Consensus 425 ~~~~~~~~~e~~p 437 (439)
++...++..|..|
T Consensus 312 ~~~~~~~~~~~~~ 324 (394)
T PRK03699 312 YTTIITLGSQQTK 324 (394)
T ss_pred HHHHHHHHHHHcc
Confidence 7766666666554
No 21
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.97 E-value=2e-28 Score=238.07 Aligned_cols=182 Identities=20% Similarity=0.270 Sum_probs=161.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
++++..+....+.++...+.....+...|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 45556666677777777777778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
+++.++.+++++++.+++.|++.|++.|.. +....++.+++|+++|++++++.+.+.++|..+++.+.+++.+.+|||.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 999999999999999999999999998887 7777899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHH-HHHhcccCCc
Q 013655 184 LLGLSAFPSSLLL-LLYSVTPESP 206 (439)
Q Consensus 184 ~~~~~~~~~~~~~-~~~~~~~~~~ 206 (439)
.|++.+++.++.. +..++++|+|
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p 202 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKP 202 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9998887665543 3445566654
No 22
>PRK09952 shikimate transporter; Provisional
Probab=99.97 E-value=6.8e-28 Score=234.40 Aligned_cols=327 Identities=17% Similarity=0.199 Sum_probs=219.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc--CCCchhhHHHH-----HHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSFVGPA-VQSLW--HLSPNQESLIT-----SVVFAGMLVGAYSWGIVSDNFGRRKGFL 98 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~G~r~~~~ 98 (439)
+++.+....+++++.+++....+++.|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 3456667777889999999998888775 45555 67766 45543 3455667889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Q 013655 99 ITAIVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA 169 (439)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~ 169 (439)
.+.++++++.+++++++++. .++++|+++|++.|.. +....++.|++|+++||+..+....+..+|..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 5889999999999998 77778999999999999999999999999999988
Q ss_pred HHHHHhh--------cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccc
Q 013655 170 GIAWLVM--------PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSD 241 (439)
Q Consensus 170 ~l~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (439)
.+..++. +.+|||..|++.+++.++...+....||+|++...+.+. ++.
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~--------------~~~--------- 235 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ--------------AAA--------- 235 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc--------------ccc---------
Confidence 7776654 357999999988877655444444455554321100000 000
Q ss_pred hhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHH
Q 013655 242 WEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGN 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (439)
+++. ...+.+++++.. ........++.
T Consensus 236 --------------------------------------~~~~-------------~~~~~l~~~~~~--~~~~~~~~~~~ 262 (438)
T PRK09952 236 --------------------------------------KKRI-------------PVIEALLRHPGA--FLKIIALRLCE 262 (438)
T ss_pred --------------------------------------cccC-------------CHHHHHHHchHH--HHHHHHHHHHH
Confidence 0000 011112222211 22222233444
Q ss_pred HHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 013655 322 AFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL 401 (439)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 401 (439)
...+|....|.+.+..+. .|.+.........+.++..+++.++.|+++||+|||+.+..+.++.+++.+.+
T Consensus 263 ~~~~~~~~~~~~~y~~~~---------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~ 333 (438)
T PRK09952 263 LLTMYIVTAFALNYSTQN---------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPF 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 555666666776665321 22333322334445567778888999999999999998887766655543322
Q ss_pred hh---ccc-cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 402 LF---QQP-KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 402 ~~---~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
.. ..+ .+......++.+++.+...+..+++.+|.+|++
T Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~ 375 (438)
T PRK09952 334 FMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS 375 (438)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 22 122 222233344556666666777888999999974
No 23
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.4e-28 Score=229.72 Aligned_cols=330 Identities=24% Similarity=0.360 Sum_probs=237.0
Q ss_pred hhhcC--CCchh----hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHH
Q 013655 56 QSLWH--LSPNQ----ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCL 126 (439)
Q Consensus 56 ~~~~~--~s~~~----~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 126 (439)
.+.+| .+..+ .+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.+ .+++.+++++|++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i 125 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI 125 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44566 34333 366788999999999999999999999999999988887777766654 4789999999999
Q ss_pred HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH-Hhh-cccchhHHHHHhHHHHHHHHHHHhccc
Q 013655 127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW-LVM-PRLGWRWLLGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~-~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (439)
.|+..|.. ...+-++.|..|.+.||....+.+.+..+|.+++..++. .+. +.-.|++.+....+++++.++...++|
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P 205 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP 205 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 677789999999999999999999999999999977653 333 344599999999999999999999999
Q ss_pred CCchhhhh-ccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhcccc
Q 013655 204 ESPRYLCL-KGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSE 282 (439)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (439)
|+|++... +++.+++++.++.++..++.+ ++.++..++. ++++..++
T Consensus 206 ESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~-------~~~e~~~~e~------------------------~~~~~~~~- 253 (485)
T KOG0569|consen 206 ESPKYLLIKKGDEEEARKALKFYRGKEDVE-------AEIEEMLREI------------------------EEEELEKK- 253 (485)
T ss_pred CCcchHHHHcCCHHHHHHHHHHHhCCCcch-------hHHHHHHHHH------------------------HHhccccc-
Confidence 99999977 788888998888887532211 0000000000 00000000
Q ss_pred ccchhhccccchhHHHHHHhhCh-HHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhH
Q 013655 283 DSTSTLANSNMGGITALLILLSP-ELIKSTLLLWLVFFGNAF-SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDV 360 (439)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 360 (439)
+..++++++++ ..++...+.+.+.+++.+ ..+....+...+..+ .|.+.+.+....
T Consensus 254 ------------~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~----------aG~~~~~a~~an 311 (485)
T KOG0569|consen 254 ------------KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT----------AGFTPEEAQYAN 311 (485)
T ss_pred ------------cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH----------cCCCHHHHHHHH
Confidence 11267777764 444444444444443332 223333333333332 458888888888
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc----cc--cc---hhhhHHHHHHhhh-hheeeeeee
Q 013655 361 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ----QP--KG---LTTGLLFGARICI-TVTFTVVYV 430 (439)
Q Consensus 361 ~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~--~~---~~~~~~~~~g~~~-~~~~~~~~~ 430 (439)
...++..++.++++.+++||+|||+.++.+..++.+..+.+... .. .| ..++..+++.+++ .+..|+.+.
T Consensus 312 ~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 312 LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 89999999999999999999999999999999998887766531 11 11 1223333444333 344799999
Q ss_pred eccccccCC
Q 013655 431 YAPEVSHRS 439 (439)
Q Consensus 431 ~~~e~~p~~ 439 (439)
+.+|++|++
T Consensus 392 i~aELf~~~ 400 (485)
T KOG0569|consen 392 IGAELFPQS 400 (485)
T ss_pred HHHHhCCcc
Confidence 999999974
No 24
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.97 E-value=1.5e-27 Score=228.72 Aligned_cols=316 Identities=15% Similarity=0.129 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 106 (439)
.|..+..+....+......+.....+|.+.+++|+++.+.++..+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 45544444444444545555666678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655 107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185 (439)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~ 185 (439)
+.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+.++|..++|++++++.+.+|||..|
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 177 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF 177 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 9999999999999999999999999988 777788999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655 186 GLSAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 264 (439)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
++.+++.++..+.. ...||.++. +. +..
T Consensus 178 ~~~~~l~~~~~l~~~~~~p~~~~~-----~~-~~~--------------------------------------------- 206 (394)
T PRK10213 178 NAAAVMGVLCIFWIIKSLPSLPGE-----PS-HQK--------------------------------------------- 206 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCcc-----cc-cch---------------------------------------------
Confidence 98877666544332 234443210 00 000
Q ss_pred hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhcCCCccc
Q 013655 265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLL-TTELNNGQNKCV 343 (439)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (439)
.+....++++..+......+..+ ..++....+ .|.+..+
T Consensus 207 --------------------------------~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~----- 246 (394)
T PRK10213 207 --------------------------------QNTFRLLQRPGVMAGMIAIFMSF---AGQFAFFTYIRPVYMNL----- 246 (394)
T ss_pred --------------------------------hHHHHHhcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh-----
Confidence 01223333333333222222222 222222222 3444422
Q ss_pred ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhh
Q 013655 344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV 423 (439)
Q Consensus 344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 423 (439)
.|.+.+..+......+++.+++.++.+++.||.+++.......+..+..+++....++.+......++.|++.+.
T Consensus 247 -----~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~ 321 (394)
T PRK10213 247 -----AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFAL 321 (394)
T ss_pred -----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 346666667888888899999999999999996544434433333333334333444555555667777888777
Q ss_pred eeeeeeeeccccccC
Q 013655 424 TFTVVYVYAPEVSHR 438 (439)
Q Consensus 424 ~~~~~~~~~~e~~p~ 438 (439)
..+...+++.+..|+
T Consensus 322 ~~~~~~~~~~~~~~~ 336 (394)
T PRK10213 322 VPVGWSTWITRSLAD 336 (394)
T ss_pred hhHHHHHHHHHHCcc
Confidence 777666666666553
No 25
>PRK15075 citrate-proton symporter; Provisional
Probab=99.96 E-value=2.7e-27 Score=230.20 Aligned_cols=323 Identities=19% Similarity=0.247 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHH-HHH-----HHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655 28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLIT-SVV-----FAGMLVGAYSWGIVSDNFGRRKGFLITA 101 (439)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-~~~-----~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 101 (439)
++.....+++.+..+++....++..|.+.++++.+..+.+.+. +.. .++..+++++.|+++||+|||++++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 4456677889999999999999999999999999887765433 222 2233468899999999999999999999
Q ss_pred HHHHHHHHHHhhcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655 102 IVTSAAGLLSAFAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA 172 (439)
Q Consensus 102 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~ 172 (439)
++.+++.++++++++++ .++++|++.|++.+.. +....++.|++|+++|++++++...+..+|..+++.++
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 4689999999999988 66778999999999999999999998888888888777
Q ss_pred HHh--------hcccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhh
Q 013655 173 WLV--------MPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244 (439)
Q Consensus 173 ~~l--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
+.+ .+.+|||..|++..+...+........||++++ . ++. ++. +
T Consensus 174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~----------~---~~~----~~~-~---------- 225 (434)
T PRK15075 174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF----------L---ARK----HRP-S---------- 225 (434)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHH----------H---Hhh----hcc-c----------
Confidence 765 256899999987544322221111111221000 0 000 000 0
Q ss_pred hhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHh
Q 013655 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFS 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
. + ..++.+.++ ++.....+...+.....
T Consensus 226 -------------------------------------~----------~---~~~~~~~~~--~~~~~~~~~~~~~~~~~ 253 (434)
T PRK15075 226 -------------------------------------M----------R---EIFRSLAAN--WRIVLAGMLMVAMTTVS 253 (434)
T ss_pred -------------------------------------c----------c---cHHHHHHHh--HHHHHHHHHHHHHHHHH
Confidence 0 0 011222211 12222223333444555
Q ss_pred hhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HH-h
Q 013655 325 YYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV-PL-L 402 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~-~ 402 (439)
++....|.|.+..+. .|.+............++.+++.++.|+++||+|||+.+..+..+..+..+ .+ .
T Consensus 254 ~~~~~~~~p~~l~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 254 FYLITVYTPTFGKTV---------LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 667777788777431 235555566777778888999999999999999999987776554433221 11 1
Q ss_pred h-ccc-cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 403 F-QQP-KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 403 ~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
. ..+ ........++.+++.+...+..+.+..|.+|++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~ 363 (434)
T PRK15075 325 LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE 363 (434)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC
Confidence 1 112 112222234445555555565667788998874
No 26
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.96 E-value=2e-27 Score=226.43 Aligned_cols=316 Identities=14% Similarity=0.060 Sum_probs=222.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 103 (439)
+..++.+.+..+.++..+..+..++++.+.+.+ ++|+|.++.+++.+++.+++.+++++.|++.||+|.|+++.++.++
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 445567888888888899999999999888876 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-----chHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 013655 104 TSAAGLLSAFA-----PNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-- 176 (439)
Q Consensus 104 ~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-- 176 (439)
+++..++.+++ ++++.+++.|++.|++.+..++....+++++|+++||+++|+.....++|..+++++...+.
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999988876 89999999999999984433777889999999999999999997667777766655554422
Q ss_pred ---c-------------ccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCcc
Q 013655 177 ---P-------------RLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS 240 (439)
Q Consensus 177 ---~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (439)
+ ..+||.+.++..++.++..++.++..++++. .+. .
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~~~-~----------------------- 241 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----SRA-S----------------------- 241 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----ccc-C-----------------------
Confidence 2 3347777777777666665554443322110 000 0
Q ss_pred chhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHH
Q 013655 241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFG 320 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (439)
.......+|+ +.+|..++.+++
T Consensus 242 -------------------------------------------------------~~~~~~vlk~---~~~Wllslly~~ 263 (462)
T PRK15034 242 -------------------------------------------------------IADQLPVLQR---LHLWLLSLLYLA 263 (462)
T ss_pred -------------------------------------------------------HHHHHHHhCC---CchhHHHHHHHH
Confidence 0022223333 234566666666
Q ss_pred HHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013655 321 NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP 400 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 400 (439)
....|.+...+.|.+..+. ++.........+..+...++++++|+++||+|+++++..+++.++++.+.
T Consensus 264 tFG~fvg~s~~lp~~~~~~-----------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 264 TFGSFIGFSAGFAMLAKTQ-----------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 6666666676777776331 32222233344556778899999999999999999998888777666533
Q ss_pred Hh-hcc-----ccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655 401 LL-FQQ-----PKGLTTGLLFGARICITVTFTVVYVYAPEVSH 437 (439)
Q Consensus 401 ~~-~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p 437 (439)
+. ..+ +.+...+..+...++.+......+-+++++||
T Consensus 333 ~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~ 375 (462)
T PRK15034 333 LFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFR 375 (462)
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHh
Confidence 22 222 12333333333344455555566666666666
No 27
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.96 E-value=2.8e-28 Score=232.83 Aligned_cols=306 Identities=17% Similarity=0.143 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 013655 44 EMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF 123 (439)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (439)
..+..+++.|++.+++|+|..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hc
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SV 201 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~ 201 (439)
|++.|++.+.. +.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..|||..|++.+++.++..+.. ++
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876 555667778776 6799999999999999999888888888888899999999888777765554 34
Q ss_pred ccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccc
Q 013655 202 TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKS 281 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (439)
++++++... +++ ++ .+ +
T Consensus 177 ~~~~~~~~~-~~~----------------~~------------------------------------~~----~------ 193 (377)
T TIGR00890 177 IGYPPGQLI-KTN----------------IE------------------------------------VS----V------ 193 (377)
T ss_pred eecCchhcc-ccC----------------cc------------------------------------cc----h------
Confidence 443321000 000 00 00 0
Q ss_pred cccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHH
Q 013655 282 EDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVF 361 (439)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 361 (439)
+....++.++++..+...... ++..........+.+.+..+ .+.+....+...+
T Consensus 194 -------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 247 (377)
T TIGR00890 194 -------------KDYTVWEMLRTPQFWVLYLSF---FLNAVSGLLLIGLYKPYGQS----------LGLSDGFLVLAVS 247 (377)
T ss_pred -------------hhhhHHHHHcCccHHHHHHHH---HHHhHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHH
Confidence 000223334333333222222 22222222222223333322 2244444567778
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccc--hhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 362 ITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG--LTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 362 ~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
...++.++++++.|++.||+|||+.+..+..+.+++.+.+.+.++.. ......++.+++.+...+....+++|.+|++
T Consensus 248 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 327 (377)
T TIGR00890 248 ISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA 327 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh
Confidence 88899999999999999999999999888888888777665544322 2223445667777777777777888888764
No 28
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.96 E-value=3.6e-27 Score=232.83 Aligned_cols=367 Identities=14% Similarity=0.091 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 106 (439)
+|..+..++++.+....+..+.+..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655 107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~ 184 (439)
+.++++++++++.++++|+++|++.+.. +.....+.+.+ |+++|++++|+......+|..+||.+++++.+++|||+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999998887 55666666665 678999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHH------HHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655 185 LGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLE------KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN 257 (439)
Q Consensus 185 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
|++...+.++..++ .+++|+++.... ++.+....... ......... .... ........- .
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~d~~g~~~~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~-~------- 230 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRRD--QPLNLGHALMLIVAILLLVYSAKTAL--KGFL-SLWVTSLTL-L------- 230 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCChHhHHHHHHHHHHHHHHHHhcc--ccCC-chHHHHHHH-H-------
Confidence 99887666655443 455676542211 11111000000 000000000 0000 000000000 0
Q ss_pred CCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655 258 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN 337 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (439)
...-.... -...|...++ +..+ .++++++... ...+..+.....+++...+.|.+.+
T Consensus 231 ----~~~~~l~~--f~~~e~~~~~-------------p~~~-~~lf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lq 287 (495)
T PRK14995 231 ----TGALLLGL--FIRTQLAASR-------------PMID-MRLFTHRIIL---SGVVMAMTAMITLVGFELLMAQELQ 287 (495)
T ss_pred ----HHHHHHHH--HHHHHhcCCC-------------CCcC-HHHhCCcccH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000000 0001 1244433322 2222233333334444455555543
Q ss_pred CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cccchhhhHH
Q 013655 338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ---QPKGLTTGLL 414 (439)
Q Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 414 (439)
.. .|.+...++.......++..++.++.|++.||+|+|+.+..+.++.+++.+++... .+.+......
T Consensus 288 ~v---------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (495)
T PRK14995 288 FV---------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM 358 (495)
T ss_pred HH---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 21 34677777888888899999999999999999999998888888777766555432 2333345567
Q ss_pred HHHHhhhhheeeeeeeeccccccC
Q 013655 415 FGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
++.|++.+...+.....+.+..|+
T Consensus 359 ~l~G~g~g~~~~~~~~~~~~~~~~ 382 (495)
T PRK14995 359 ALLGFSAASALLASTSAIMAAAPP 382 (495)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCH
Confidence 777888887777666666666664
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.96 E-value=7e-28 Score=231.50 Aligned_cols=331 Identities=17% Similarity=0.154 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHH
Q 013655 39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYY 118 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~ 118 (439)
+....+....+...|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..+.+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 45566667788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 013655 119 LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 197 (439)
.+++.|++.|++.+.. +....++.|++|+++|++++++.+...++|..+++.+++++.+..+||..|++.+++.++..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 9999999999999888 777799999999999999999999999999999999999999999999999988877776655
Q ss_pred HH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHh
Q 013655 198 LY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEA 276 (439)
Q Consensus 198 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (439)
.. +..|++++... ...++.++...+ . ... + . +++
T Consensus 164 ~~~~~~~~~~~~~~--~~~~~~~~~~~~--~-~~~---------------------------~---------~----~~~ 198 (399)
T TIGR00893 164 LWLKFIPDPPQKAK--WLTEEEKYIVVG--G-LLA---------------------------E---------Q----QGK 198 (399)
T ss_pred HhhheecCCCCccc--cCCHHHHhhcch--h-hcc---------------------------c---------c----ccc
Confidence 43 44555432110 000000000000 0 000 0 0 000
Q ss_pred hhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc
Q 013655 277 KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN 356 (439)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 356 (439)
++. +..+...++.++++.. +...+..+.....+.....+.|.+..+. .+.+....
T Consensus 199 ~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 253 (399)
T TIGR00893 199 GPS-------------TPKKYQIKELLKDRRV---WGLALGQFLVNIGLGFFLTWFPTYLVQE---------RGLSILEA 253 (399)
T ss_pred ccc-------------CCCccchHHHhcCHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------hcccHHHh
Confidence 000 0000133444444332 3333333444444445555566555331 23555566
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHHHhhhHH--HHHHHHH--HHH--HHHHHHhhc-cccchhhhHHHHHHhhhhheeeeee
Q 013655 357 YGDVFITSFAEFPGLLLAAAMVDRLGRKL--SMSSMFF--CCC--IFLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVY 429 (439)
Q Consensus 357 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~--~~~~~~~--~~~--~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 429 (439)
+.......++.+++.++.|++.||++||+ ....... ... ......... .+...........+.+..+..+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (399)
T TIGR00893 254 GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGW 333 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHH
Confidence 77788888999999999999999999985 1111111 111 111111111 1122222223333333333678888
Q ss_pred eeccccccCC
Q 013655 430 VYAPEVSHRS 439 (439)
Q Consensus 430 ~~~~e~~p~~ 439 (439)
++.+|.+|++
T Consensus 334 ~~~~~~~~~~ 343 (399)
T TIGR00893 334 ALISDNAPGN 343 (399)
T ss_pred HHHHhhcChh
Confidence 9999998864
No 30
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.5e-27 Score=214.50 Aligned_cols=324 Identities=19% Similarity=0.175 Sum_probs=254.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
.++.+++.+++..+.+...++.+..++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.+
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~ 87 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML 87 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence 44556677888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc---hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013655 103 VTSAAGLLSAFAP---NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL 179 (439)
Q Consensus 103 ~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~ 179 (439)
+..+..+..+++. +++.+++++++.|++.+...+..+.+++++|++++|.++|+.. ..++|..+...++..+....
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 9999998888874 4569999999999999988888899999999999999999999 89999999999999998888
Q ss_pred c---hhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCC
Q 013655 180 G---WRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS 255 (439)
Q Consensus 180 g---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (439)
+ |+....+..+..++..++ ++...+.|......+.. +.
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~-~~------------------------------------- 208 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ-LP------------------------------------- 208 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc-ch-------------------------------------
Confidence 8 999888888777776555 44444443210000000 00
Q ss_pred CCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655 256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL 335 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (439)
..++.++++ +.+|...+.|+.....+.+...+.|.|
T Consensus 209 -----------------------------------------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~ 244 (417)
T COG2223 209 -----------------------------------------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMY 244 (417)
T ss_pred -----------------------------------------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022333322 445667777777777777777777777
Q ss_pred hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-------ccc
Q 013655 336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-------PKG 408 (439)
Q Consensus 336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-------~~~ 408 (439)
..+ +.|.+...++.....+.+.+.+.|+++|+++||+|.++++...+..++++........ +..
T Consensus 245 ~~~---------~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 315 (417)
T COG2223 245 LVT---------QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV 315 (417)
T ss_pred HHH---------hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence 755 3557777778888899999999999999999999998888888888888777766543 233
Q ss_pred hhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655 409 LTTGLLFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 409 ~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
......+..+++.+......+.+++.++|.
T Consensus 316 ~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~ 345 (417)
T COG2223 316 VFVAVFLALFVFAGLGNGSVFKMIPVIFPK 345 (417)
T ss_pred HHHHHHHHHHHHhccCcchheeechHHHHh
Confidence 334445555566666667777777777764
No 31
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.96 E-value=2.5e-27 Score=225.35 Aligned_cols=321 Identities=14% Similarity=0.106 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655 35 GMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA 114 (439)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 114 (439)
....+...+......+..|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777778888888999999999999999999999999999999999999999999999888888887777
Q ss_pred c-----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 115 P-----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 115 ~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
+ +++.+++.|++.|++.+.. +...+++.|+.|+++|++++++.+.+..+|..++|.+++++.+..|||..|++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6 9999999999999999988 777899999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655 189 AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR 268 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
++..++..+..+.++.++... +++.+..++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------------------------------------- 196 (365)
T TIGR00900 165 AVGFAISALLIVSVRIPELAA--SEIQALSNAVL---------------------------------------------- 196 (365)
T ss_pred HHHHHHHHHHHHhcccccCCC--ccccccchhHH----------------------------------------------
Confidence 776666554444332211000 00000000000
Q ss_pred cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhcCCCccccccc
Q 013655 269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLV-LLTTELNNGQNKCVSNEL 347 (439)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 347 (439)
++....++.+++++..+......+... ..+.... .+.|.+..+.
T Consensus 197 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------- 241 (365)
T TIGR00900 197 ------------------------RDTREGIKFVLKNPLLRTLLLLALLFN---LVFAPAIVALFPYVQSKY-------- 241 (365)
T ss_pred ------------------------HHHHhHHHHHHcCcHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHH--------
Confidence 000013445555444433333222221 1111121 3334443210
Q ss_pred ccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhhhheee
Q 013655 348 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFT 426 (439)
Q Consensus 348 ~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 426 (439)
.+.+....+.......++.+++.++.+++.||++||+.+..+..+.+++.+.+.+.++ .+...+..++.|++.+...+
T Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (365)
T TIGR00900 242 -LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV 320 (365)
T ss_pred -hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 2255555677788888999999999999999999999988887777777666665553 55556677788888888888
Q ss_pred eeeeeccccccCC
Q 013655 427 VVYVYAPEVSHRS 439 (439)
Q Consensus 427 ~~~~~~~e~~p~~ 439 (439)
...++..|.+|++
T Consensus 321 ~~~~~~~~~~~~~ 333 (365)
T TIGR00900 321 PQGTLLQRRVPAE 333 (365)
T ss_pred HHHHHHHHhCCHH
Confidence 8888888888863
No 32
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.96 E-value=4.6e-27 Score=233.07 Aligned_cols=183 Identities=26% Similarity=0.457 Sum_probs=162.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 103 (439)
++.+++.+..++++++...+......+..|.+.+++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 35667777788888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655 104 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
.+++.++..++++++.+++.|++.|++.+.. +....++.|++|+++|++++++...+..+|..++|.+.+++.+.++||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 9999999999999999999999999998887 777789999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcccCCc
Q 013655 183 WLLGLSAFPSSLLLLLYSVTPESP 206 (439)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~ 206 (439)
..|++..+..++..+....+|+++
T Consensus 175 ~~f~~~~~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 175 ALFFIGILPIIFALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCch
Confidence 999876554444443344455543
No 33
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.96 E-value=4.7e-28 Score=229.18 Aligned_cols=321 Identities=23% Similarity=0.329 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655 36 MGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA 114 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 114 (439)
+..+..........+..| .+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 455666677777788888 8899999999999999999999999999999999999999999999999999996666666
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS 193 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~ 193 (439)
++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|.+++++.+..+||..|++.+++.+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 78889999999999999888 77889999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655 194 LLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 272 (439)
Q Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
+..++ ..+++++++....+.+.++.
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 188 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESE------------------------------------------------------ 188 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT------------------------------------------------------
T ss_pred hhhhhHhhhhhhcccccccccccccc------------------------------------------------------
Confidence 87664 34444443211000000000
Q ss_pred hhHhhhccccccchhhccccchhHH-HHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655 273 ISEAKEMKSEDSTSTLANSNMGGIT-ALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK 351 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 351 (439)
++++ .++. .++.+++++..+ ......+.....++....+.|.+..+ ..+.
T Consensus 189 -~~~~----------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~ 239 (352)
T PF07690_consen 189 -SKKP----------------KPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQE---------VLGF 239 (352)
T ss_dssp ---HH----------------HCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHC
T ss_pred -cccc----------------cccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhh---------ccCC
Confidence 0000 0000 133444443332 12222222333334455556655322 1224
Q ss_pred C-CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cccchhhhHHHHHHhhhhheeee
Q 013655 352 S-RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ---QPKGLTTGLLFGARICITVTFTV 427 (439)
Q Consensus 352 ~-~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~ 427 (439)
+ ....+.......+..++++++.|++.||+++|+..........+..+.+... ++........++.|++.+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 319 (352)
T PF07690_consen 240 SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPI 319 (352)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3444667888888899999999999999998777766666666655555433 23355556777788888888999
Q ss_pred eeeeccccccCC
Q 013655 428 VYVYAPEVSHRS 439 (439)
Q Consensus 428 ~~~~~~e~~p~~ 439 (439)
...+..|.+|++
T Consensus 320 ~~~~~~~~~~~~ 331 (352)
T PF07690_consen 320 LFSLIQELVPPE 331 (352)
T ss_dssp HHHHHHCCCHTC
T ss_pred HHHHHHHhCCHH
Confidence 999999998864
No 34
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.96 E-value=4.4e-27 Score=225.51 Aligned_cols=312 Identities=15% Similarity=0.195 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655 37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
..+..........+..|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 92 (385)
T TIGR00710 13 LSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN 92 (385)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555566677777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.+++++.+..+||..+++.++..++.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999999999988 7777899999999999999999999999999999999999999899999999888776665
Q ss_pred HHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchh
Q 013655 196 LLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSIS 274 (439)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (439)
.+. .+..||+++.. ++++.+
T Consensus 173 ~~~~~~~~~~~~~~~----~~~~~~------------------------------------------------------- 193 (385)
T TIGR00710 173 SALIFFILPETLPYE----ARIQIS------------------------------------------------------- 193 (385)
T ss_pred HHHHHHhCCCCCCCc----ccCCHH-------------------------------------------------------
Confidence 544 34445542110 000000
Q ss_pred HhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCC
Q 013655 275 EAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD 354 (439)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 354 (439)
..+..++++++++..+...+... .....++....+.|.+..+ +.+.++.
T Consensus 194 -------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~g~~~~ 242 (385)
T TIGR00710 194 -------------------TYFETFLLLLKSKMFWGYALIYG---ASFGGFFAFFSGAPFVYID---------IMGVSPS 242 (385)
T ss_pred -------------------HHHHHHHHHHcCchhHHHHHHHH---HHHHHHHHHHHcChHHHHH---------HcCCCHH
Confidence 00013334444333322222211 1122222233333433321 1235666
Q ss_pred CchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----cccchhhhHHHHHHhhhhheeeeee
Q 013655 355 INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-----QPKGLTTGLLFGARICITVTFTVVY 429 (439)
Q Consensus 355 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~ 429 (439)
..+.......++.++++++.|++.||+|+|+.+..+..+..++.+.+... ..........++.|++.+...+...
T Consensus 243 ~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 322 (385)
T TIGR00710 243 VFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAM 322 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888889999999999999999999998887777666655544332 1122333445566777777777777
Q ss_pred eeccccccC
Q 013655 430 VYAPEVSHR 438 (439)
Q Consensus 430 ~~~~e~~p~ 438 (439)
....|..|+
T Consensus 323 ~~~~~~~~~ 331 (385)
T TIGR00710 323 AYALEDFPH 331 (385)
T ss_pred HHHhccCcc
Confidence 777777764
No 35
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.96 E-value=5.2e-27 Score=225.15 Aligned_cols=295 Identities=16% Similarity=0.143 Sum_probs=216.0
Q ss_pred HHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 013655 46 MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125 (439)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (439)
...++..|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++.+++++++.+++.|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHhccc
Q 013655 126 LVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 126 l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 203 (439)
+.|++.+.. +....++.+++| ++|++++|++..+..+|..+++.+++++.++. +||..+.+.++..++..+..+...
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987 666677888886 78999999999999999999999999988875 899988776655544433332221
Q ss_pred CCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccc
Q 013655 204 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSED 283 (439)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (439)
++.+ +.++ +.+ . .
T Consensus 185 ~~~~------~~~~------------~~~-----------------~------------------------------~-- 197 (393)
T PRK09705 185 AREV------ASSH------------KTT-----------------T------------------------------T-- 197 (393)
T ss_pred cCCC------cccc------------CCC-----------------c------------------------------C--
Confidence 1100 0000 000 0 0
Q ss_pred cchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHH
Q 013655 284 STSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFIT 363 (439)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 363 (439)
..+.+++++ .+...+.+++....++....|.|.+..+ .|.+...++...+..
T Consensus 198 --------------~~~~l~~~~----~~~l~~~~~~~~~~~~~~~~~lp~~l~~----------~g~s~~~ag~~~~~~ 249 (393)
T PRK09705 198 --------------PVRVVFTPR----AWTLGVYFGLINGGYASLIAWLPAFYIE----------IGASAQYSGSLLALM 249 (393)
T ss_pred --------------CcccccCHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChhhhhHHHHHH
Confidence 000011121 2222333344455666777777777754 346777778888899
Q ss_pred hhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655 364 SFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSH 437 (439)
Q Consensus 364 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p 437 (439)
+++.++|+++.+++.||++||+.+..+..+.+++.+++...++... ....++.+++.+..++.......+.+|
T Consensus 250 ~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~ 322 (393)
T PRK09705 250 TLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP-VLWAMVCGLGLGGAFPLCLLLALDHSV 322 (393)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHhccchHHHHHHHHHhhcC
Confidence 9999999999999999999999888887777776655443332211 122345566666666655555555553
No 36
>PRK10133 L-fucose transporter; Provisional
Probab=99.96 E-value=2.1e-26 Score=223.30 Aligned_cols=324 Identities=14% Similarity=0.107 Sum_probs=228.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
+.....+..+.+.++..++......+..|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33455566667777888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-c-
Q 013655 105 SAAGLLS---AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-R- 178 (439)
Q Consensus 105 ~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~- 178 (439)
+++.+++ .++++++.++++|++.|++.|.. +...+++.++.++++|...+++.+....+|..+++.+++.+.. .
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998775 46789999999999999999988 6777888888777777778999999999999999998876431 0
Q ss_pred ------------------------cchhHHHHHhH-HHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCC
Q 013655 179 ------------------------LGWRWLLGLSA-FPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTK 232 (439)
Q Consensus 179 ------------------------~g~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (439)
.+||.+|+... +..++..+. ....||.+. +++.++..
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~~~------------- 244 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSDAKQ------------- 244 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccccccc-------------
Confidence 24565665433 322222222 222232110 00000000
Q ss_pred CCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHH
Q 013655 233 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL 312 (439)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (439)
.+.....+.+++++..+...
T Consensus 245 ------------------------------------------------------------~~~~~~~~~ll~~~~~~~~~ 264 (438)
T PRK10133 245 ------------------------------------------------------------GSFSASLSRLARIRHWRWAV 264 (438)
T ss_pred ------------------------------------------------------------cchhhhHHHHHhCchHHHHH
Confidence 00000233455444333322
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh-cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 013655 313 LLWLVFFGNAFSYYGLVLLTTELN-NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 391 (439)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~ 391 (439)
+..+ +.....++...|.+.+. ++ ..|.+....+.......++.++|+++++++.||+|+|+++..+.
T Consensus 265 l~~~---~~~~~~~~~~~~~~~~l~~~---------~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~ 332 (438)
T PRK10133 265 LAQF---CYVGAQTACWSYLIRYAVEE---------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHhhh---------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2222 22233233333444442 11 13477777788889999999999999999999999999988887
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655 392 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.+.++.++...+.++. .....+.+.|++.+..+|..++...|.+|+
T Consensus 333 ~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~ 378 (438)
T PRK10133 333 LIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7766665555444432 334566788999999999999988887765
No 37
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.96 E-value=1.6e-26 Score=225.97 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=146.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 103 (439)
++++|.++...++............++..|++.++ |+|..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 34455555555555666666655667788888888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHH-HHHHHHHhhc
Q 013655 104 TSAAGLLSAFA----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTIL-EAGIAWLVMP 177 (439)
Q Consensus 104 ~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i-~~~l~~~l~~ 177 (439)
.+++.+++++. .+++.+++.|++.|++.+.. +.....+.+++|+++|++++|+.+.+.++|..+ +|.+...+..
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 182 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW 182 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99888888765 36888899999999998887 666778889999999999999999999998754 5544333333
Q ss_pred ccchhHHHHHhHHHHHHH-HHHHhcccCCch
Q 013655 178 RLGWRWLLGLSAFPSSLL-LLLYSVTPESPR 207 (439)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 207 (439)
..|||..|++.+++.++. .+..+++||+|+
T Consensus 183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 459999999888776664 344566677653
No 38
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.96 E-value=7.1e-27 Score=222.51 Aligned_cols=328 Identities=16% Similarity=0.177 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
+..++.++..........++.|. +.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.++.+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34556666777777888888995 88999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc----------cc
Q 013655 111 SAFAP-NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP----------RL 179 (439)
Q Consensus 111 ~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~ 179 (439)
..+++ +++.+++.|++.|++.+...+..+++.+++|+++|+++.++...+.++|..+++.+++.+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~ 163 (366)
T TIGR00886 84 AGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL 163 (366)
T ss_pred HHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999 99999999999999866556667889999999999999999998788888777777766543 34
Q ss_pred chhHHH-HHhHHHHHHH-HHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCC
Q 013655 180 GWRWLL-GLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSN 257 (439)
Q Consensus 180 g~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
+||+.+ +..+++..+. .+.....+++|+.. ++ +.+. + .. +..
T Consensus 164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~-----~---~~----------------~~~------- 207 (366)
T TIGR00886 164 AWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PA-TGKL-----S---FK----------------GAR------- 207 (366)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcccCCccc----cc-chhc-----c---cc----------------ccc-------
Confidence 899988 4434443333 33344455543210 00 0000 0 00 000
Q ss_pred CCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655 258 EDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN 337 (439)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (439)
. +.+ + +......+.++++..+ ...+..++....++....+.+.+..
T Consensus 208 ------~---~~~---~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T TIGR00886 208 ------W---SVG---T-------------------GALGDQLKVFRDRHTW---ILALLYSVTFGSFLGVSSIFAMFFK 253 (366)
T ss_pred ------c---ccc---c-------------------hhHHHHHHHHhccchh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0 0000122233322222 2222222333333444455555553
Q ss_pred CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh--cc--ccchhhhH
Q 013655 338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF--QQ--PKGLTTGL 413 (439)
Q Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ 413 (439)
+. .|.+...++.......+..++++++.|++.||+|||+.+..+....+.+...+.. .. +.+..+..
T Consensus 254 ~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (366)
T TIGR00886 254 DQ---------FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVL 324 (366)
T ss_pred HH---------cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence 21 2356666677778888889999999999999999988777666665555444433 22 23333344
Q ss_pred HHHHHhhhhheeeeeeeeccccccC
Q 013655 414 LFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 414 ~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
..+..++.+...+..+.+++|++|.
T Consensus 325 ~~~~~~~~g~~~~~~~~~~~~~~~~ 349 (366)
T TIGR00886 325 FVALFFFSGAGNGSTFALVPHIFRR 349 (366)
T ss_pred HHHHHHHhccccchhhhcchhhchh
Confidence 4555556666667777777787764
No 39
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.96 E-value=1.3e-26 Score=227.74 Aligned_cols=288 Identities=16% Similarity=0.174 Sum_probs=214.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------hcCCCchhhHHHHHHHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQS----------------------LWHLSPNQESLITSVVFAGMLVG 80 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~g~~~~~~~~~~~~~ 80 (439)
..+.++.+..++.+++...+.++...+...+.+.+ +++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 45667778888888888888888888887777765 78999999999999999999999
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH
Q 013655 81 AYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 157 (439)
Q Consensus 81 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~ 157 (439)
++++|+++||+|||+++..+.++++++.++..++ .+++.+++.|++.|++.+.. +....++.|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999988888776543 56888999999999999998 77789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHhc-ccCCchhhhhccchHHHHHHHHHHHHHhCCCCCC
Q 013655 158 QTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLYSV-TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPS 235 (439)
Q Consensus 158 ~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (439)
..+..+|..+++++.+++.+.. |||..|++.+++.++..++++. .+++|+..... .++.++ ...+...++
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~---~i~~~~~~~--- 244 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI--SKFEKK---YINSSLQGQ--- 244 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC--CHHHHH---HHHhhcccc---
Confidence 9999999999999999999884 9999999988887776655444 44554321100 000000 000000000
Q ss_pred CCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHH
Q 013655 236 GNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLW 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (439)
++... ...+++++++++.. +...
T Consensus 245 -----------------------------------------~~~~~-------------~~~~~~~~~~~~~~---~~~~ 267 (465)
T TIGR00894 245 -----------------------------------------KGSTR-------------QSLPIKAIPKSLPV---WAIW 267 (465)
T ss_pred -----------------------------------------cCCCC-------------CCCCHHHHhcCHHH---HHHH
Confidence 00000 00135556655433 4444
Q ss_pred HHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhH
Q 013655 316 LVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK 384 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr 384 (439)
+..++....++....|.|.+..+. .|.+....+...++..++.+++.+++|+++||+++|
T Consensus 268 ~~~~~~~~~~~~~~~~lp~~l~~~---------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 268 FAIFGHFWLYTILPTYLPTFISWV---------LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455556666667777788776432 346666678888888999999999999999998754
No 40
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.95 E-value=1.4e-26 Score=229.11 Aligned_cols=361 Identities=15% Similarity=0.142 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655 30 VLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 109 (439)
.+..+.++.+...++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34556677788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
+++++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..++|.+++++.++++||+.|++.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 9999999999999999999999988 777899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHH-----H-HHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCC
Q 013655 189 AFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLE-----K-IAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT 261 (439)
Q Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (439)
+.+.++..++ .+..|++++.. +++.+....... . .......+.. + ...+ .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~-~-~~~~--~~---------------- 220 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPER-G-WFDS--NE---------------- 220 (485)
T ss_pred hHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCC-C-CCCc--hH----------------
Confidence 7776665444 34455543211 111111100000 0 0000000000 0 0000 00
Q ss_pred chhhhccc----CCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 013655 262 TPKEMARD----EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNN 337 (439)
Q Consensus 262 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (439)
........ ......+...++ +..+. .+++++..... .+..+.....++....+.|.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~ 283 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDN-------------PLVDL-RLFKYRNFTIG---CVYMSLLGLGLYGSFYLLPLYLQ 283 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-------------CccCH-HHHcCCChHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000000000000 00011 23333222222 22223333444444555565553
Q ss_pred CCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh--cc--ccchhhhH
Q 013655 338 GQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF--QQ--PKGLTTGL 413 (439)
Q Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ 413 (439)
+. .|.+...++.......++.+++.++.|++.||+|||+.+..+..+.+++.+.+.+ .. +.+.....
T Consensus 284 ~~---------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (485)
T TIGR00711 284 QV---------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP 354 (485)
T ss_pred Hh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 31 3466666788888888999999999999999999999998888888877776652 12 22334445
Q ss_pred HHHHHhhhhheeeeeeeeccccccC
Q 013655 414 LFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 414 ~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.++.|++.+..++.......+.+|+
T Consensus 355 ~~l~g~g~~~~~~~~~~~~~~~~~~ 379 (485)
T TIGR00711 355 QFIRGFGMGCFFMPLTTIALSGLPP 379 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 6667777776665555555555664
No 41
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.95 E-value=2.3e-26 Score=221.61 Aligned_cols=307 Identities=18% Similarity=0.093 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 109 (439)
+....+..+...++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 334555566666777777777776 5688999999999999999999999999999999999999999999988877665
Q ss_pred HHhhc--------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 110 LSAFA--------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 110 ~~~~~--------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
.+.++ .+++.+++.|++.|++.+.. +....++.++.|+++|++++++...+..+|..+++++++++.+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 54432 25678899999999999988 6667888999999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCC
Q 013655 181 WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD 260 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
|+..+++..+..++..+.....|++++ + +. + +.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~-~-~~---------------------------------------- 209 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAVPP----V-KG-E-RL---------------------------------------- 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC----C-Cc-c-ch----------------------------------------
Confidence 999887766654443332222222110 0 00 0 00
Q ss_pred CchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 013655 261 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN 340 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (439)
++++.+++ .+.... ........+.....+.+.+..+.
T Consensus 210 -------------------------------------~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 246 (399)
T PRK05122 210 -------------------------------------PFRRVLGR-VWPYGM----GLALASIGFGTIATFITLYYAAR- 246 (399)
T ss_pred -------------------------------------hHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHc-
Confidence 11111111 011111 11111222233333444443221
Q ss_pred cccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhh
Q 013655 341 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARIC 420 (439)
Q Consensus 341 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 420 (439)
+. ...+.......++.++++++.|++.||+|+|+.+..+..+.+++.+.+...++.+...+..++.|++
T Consensus 247 ---------~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 247 ---------GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred ---------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12 2334556677788899999999999999999998888888777777666666655555667778888
Q ss_pred hhheeeeeeeeccccccC
Q 013655 421 ITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 421 ~~~~~~~~~~~~~e~~p~ 438 (439)
.+..++.......|.+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~ 333 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPP 333 (399)
T ss_pred HHHHHHHHHHHHHHhCCH
Confidence 877777666666677664
No 42
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.95 E-value=1.6e-26 Score=221.08 Aligned_cols=297 Identities=15% Similarity=0.094 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
++......+..+.......+.+|.+.+++|.|..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 34445566667777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655 111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA 189 (439)
Q Consensus 111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~ 189 (439)
.+++++++.+++.|++.|++.+.. +.....+.++.++++|++++++...+..+|..++|++++++.+..|||..|++.+
T Consensus 85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 999999999999999999999887 6666778899999999999999999999999999999999999899999999988
Q ss_pred HHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655 190 FPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR 268 (439)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
+..++..+. ...+||.++ +.+. +.++
T Consensus 165 ~~~~~~~~~~~~~lp~~~~----~~~~-~~~~------------------------------------------------ 191 (382)
T PRK10091 165 VFNIAVLASIYFWVPDIRD----EAKG-GLRE------------------------------------------------ 191 (382)
T ss_pred HHHHHHHHHHHHhCCCCCc----cccc-CHHH------------------------------------------------
Confidence 776665443 444565421 0000 0000
Q ss_pred cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccc
Q 013655 269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQ 348 (439)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (439)
.++.+.+++. +..... .++.....+....+.+.+..+ .
T Consensus 192 -----------------------------~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~ 229 (382)
T PRK10091 192 -----------------------------QFHFLRSPAP-WLIFAA---TMFGNAGVFAWFSYIKPYMMF---------I 229 (382)
T ss_pred -----------------------------HHHHhcChHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHH---------h
Confidence 1111222221 111111 111111111111122222211 1
Q ss_pred cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-ccccchhhhHHHHHHhhhh
Q 013655 349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF-QQPKGLTTGLLFGARICIT 422 (439)
Q Consensus 349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 422 (439)
.|.+....+...+...++.++++++.+++.||+|+|+.+..+..+.+++.+.+.. .++.+...+..++.+++..
T Consensus 230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 304 (382)
T PRK10091 230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF 304 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3466666788888999999999999999999999999888888777776655443 3333333334444444443
No 43
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=228.09 Aligned_cols=323 Identities=27% Similarity=0.352 Sum_probs=228.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHh
Q 013655 64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFL 142 (439)
Q Consensus 64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~ 142 (439)
++.+++.+...++..+++++.|+++|++|||+.++++.++..++.++.++++|++.++++|++.|+|.|.. .+.+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999 77779999
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHH
Q 013655 143 EFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHV 221 (439)
Q Consensus 143 ~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (439)
|..|++.||...+..+....+|..++..++....+. ++||..+.+..+++++..+..+++||+|++..++++.+++++.
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence 999999999999999999999999985554444332 4899999999999988877788899999999999999999988
Q ss_pred HHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHH
Q 013655 222 LEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLI 301 (439)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (439)
+.++...++.+ .+.+.++.+ .+...+......+ ..+++
T Consensus 249 l~~l~g~~~~~---------~~~~~~~~~--------------------~~~~~~~~~~~~~-------------~~~~~ 286 (513)
T KOG0254|consen 249 LKRLRGLSPED---------VEVELELLK--------------------IKLLVEAEVAEGK-------------ASWGE 286 (513)
T ss_pred HHHHhCCCCcc---------hHHHHHHHH--------------------HHHHHhhhccccc-------------ccHHH
Confidence 88876522110 011110000 0000000000000 03555
Q ss_pred hhChHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHH
Q 013655 302 LLSPELIKSTLLLWLVFFGNA-FSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR 380 (439)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr 380 (439)
++++..+++....+.....+. ..+....++.+.+.... |..... .....+.++..+++.+++.+++||
T Consensus 287 l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~----------g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~ 355 (513)
T KOG0254|consen 287 LFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA----------GLKSDT-FLASIILGVVNFLGTLVATYLVDR 355 (513)
T ss_pred hcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc----------CCCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665545555554333333222 22222223333333221 233222 566677778888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhc----cc--------cchhh-hHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 381 LGRKLSMSSMFFCCCIFLVPLLFQ----QP--------KGLTT-GLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 381 ~grr~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~-~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+|||+.++.+...+.++.+++... .. .+..+ ..++....+..+..|+.+.+.+|.+|.+
T Consensus 356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred hccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 999999999999998887766531 11 11222 2223333344555688889999999964
No 44
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.95 E-value=1.5e-25 Score=216.47 Aligned_cols=316 Identities=14% Similarity=0.017 Sum_probs=222.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
+..+.....+.+..+...+......+..|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455555566666666777777777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
+++.++..++++++.+++.|++.|++.+.. +...+.+.|.+|+++|+++.++...+..+|..++|.+++++.+..+||.
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 999999999999999999999999998887 6677888999999999999999988888999999999999999899999
Q ss_pred HHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCc
Q 013655 184 LLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTT 262 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (439)
.+++.+++.++..+. .+..||+++.. +++.+. ++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~-------------------------------------- 203 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMPETAGRV---GEKLSL----KE-------------------------------------- 203 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccc---cccccH----HH--------------------------------------
Confidence 999888777766554 34455542110 000000 00
Q ss_pred hhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcc
Q 013655 263 PKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC 342 (439)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
...+++.+++++..+...... +.....++....+.|.+..+
T Consensus 204 --------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~---- 244 (406)
T PRK15402 204 --------------------------------LGRDYKLVLKNRRFVAGALAL---GLVSLPLLAWIALSPVILIS---- 244 (406)
T ss_pred --------------------------------HHHHHHHHHcCcHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH----
Confidence 001344455444333222221 11112222222233433311
Q ss_pred cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----cccchhhhHHHHH
Q 013655 343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-----QPKGLTTGLLFGA 417 (439)
Q Consensus 343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 417 (439)
+.+.+....+.......++.++|+++.+++.||+++|+.+..+.++.+++.+.+... .+.+......++.
T Consensus 245 -----~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (406)
T PRK15402 245 -----GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLY 319 (406)
T ss_pred -----HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 122444444555555667788999999999999999998888877766655554432 1233344556667
Q ss_pred Hhhhhheeeeee
Q 013655 418 RICITVTFTVVY 429 (439)
Q Consensus 418 g~~~~~~~~~~~ 429 (439)
+++.+...+...
T Consensus 320 g~g~~~~~~~~~ 331 (406)
T PRK15402 320 AFGIGLANAGLY 331 (406)
T ss_pred HHHHHHHhhhHH
Confidence 777666555443
No 45
>PRK12382 putative transporter; Provisional
Probab=99.95 E-value=5.5e-26 Score=218.41 Aligned_cols=304 Identities=15% Similarity=0.079 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH-
Q 013655 34 AGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS- 111 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~- 111 (439)
+.++.+..........+.+|. +.+++|.|..+.|++.+++.+++.++++++|+++||+|||++++.+.+..+++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (392)
T PRK12382 20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL 99 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666775 568899999999999999999999999999999999999999999887776654432
Q ss_pred --hh-----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 112 --AF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 112 --~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
.+ .++++.+++.|++.|++.+.. +...+++.++.|+++|++++++.+.+..+|..++|++++++.+.+||+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (392)
T PRK12382 100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA 179 (392)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 11 357889999999999999877 6666888999999999999999999999999999999999999899998
Q ss_pred HHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655 184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 263 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (439)
.+.+..+..++........|+.++ ++++ ++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~------------------------------------------- 209 (392)
T PRK12382 180 LALTTMVLPLLAWAFNGTVRKVPA------HAGE-RP------------------------------------------- 209 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC------Cccc-Cc-------------------------------------------
Confidence 766554443332222211121100 0000 00
Q ss_pred hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655 264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV 343 (439)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
+.+...+.++++ . ... ......+.....+.+.+..+.
T Consensus 210 ------------------------------~~~~~~~~~~~~----~-~~~----~l~~~~~~~~~~~~~~~~~~~---- 246 (392)
T PRK12382 210 ------------------------------SLWSVVGLIWKP----G-LGL----ALQGVGFAVIGTFVSLYFASK---- 246 (392)
T ss_pred ------------------------------hHHHHHHHHHHh----H-HHH----HHHHHHHhHHHHHHHHHHHhc----
Confidence 000011111111 1 111 111122222333344443221
Q ss_pred ccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhh
Q 013655 344 SNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV 423 (439)
Q Consensus 344 ~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 423 (439)
+.+ ..+.......++.++++++.|++.||+|+|+.+..+..+.++..+.+.+.++.+...+..++.+++.+.
T Consensus 247 ------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 318 (392)
T PRK12382 247 ------GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSL 318 (392)
T ss_pred ------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 122 234555667777889999999999999999998888888877777666665555555566777777777
Q ss_pred eeeeeeeeccccccC
Q 013655 424 TFTVVYVYAPEVSHR 438 (439)
Q Consensus 424 ~~~~~~~~~~e~~p~ 438 (439)
..+...+...|.+|+
T Consensus 319 ~~~~~~~~~~~~~~~ 333 (392)
T PRK12382 319 IFPALGVEVVKRVPS 333 (392)
T ss_pred HHHHHHHHHHHhcCH
Confidence 677666666777764
No 46
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.95 E-value=1.4e-25 Score=215.57 Aligned_cols=318 Identities=13% Similarity=0.088 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
+.+++..++..++......+..|.+++++|+|..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 44566677777888888889999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hhh---cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 013655 111 SAF---APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-------- 178 (439)
Q Consensus 111 ~~~---~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-------- 178 (439)
+.. .++++.+++.|++.|+|.|.. +...+++.+..|+++|++.+++.+.+.++|..++|.+++.+...
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 644 468999999999999999998 77778888999999999999999999999999999998877422
Q ss_pred ------------------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCcc
Q 013655 179 ------------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS 240 (439)
Q Consensus 179 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (439)
.+||.+|++.+++.++..++..+.+.++. +.++++ +.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~----~~~~~~-~~-------------------- 219 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPAL----NHSDAK-QI-------------------- 219 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----Cccccc-cc--------------------
Confidence 36999998888776665444333221100 000000 00
Q ss_pred chhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHH
Q 013655 241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFG 320 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (439)
+. + ...+++++++..+...+..+++..
T Consensus 220 --------------------------------------~~------------~---~~~~~~~~~~~~~~~~l~~f~yvg 246 (410)
T TIGR00885 220 --------------------------------------SF------------S---ASLSRLARIRHYREGVIAQFFYVG 246 (410)
T ss_pred --------------------------------------cc------------h---hhHHHHHhChhHHHHHHHHHHHHH
Confidence 00 0 022234444333333333233322
Q ss_pred HHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013655 321 NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVP 400 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 400 (439)
. ......+.+.+..+.+ .+.+...+....+....+..+|+++++++.||+++|+.+.++..++++..++
T Consensus 247 ~---e~~~~s~l~~y~~~~~--------~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll 315 (410)
T TIGR00885 247 V---QIMCWTFIIQYAVRLI--------PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG 315 (410)
T ss_pred H---HHHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 2 2233344555543211 1122222344455555778999999999999999999988888888888777
Q ss_pred HhhccccchhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655 401 LLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 401 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
....++. .....+.+.+++.+..+|..++...+..++
T Consensus 316 ~~~~~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~ 352 (410)
T TIGR00885 316 SIFAGGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQ 352 (410)
T ss_pred HHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7765553 345667778888888899888887776664
No 47
>PRK11043 putative transporter; Provisional
Probab=99.95 E-value=3.7e-25 Score=213.32 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH
Q 013655 38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY 117 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~ 117 (439)
.....+......+..|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+++..+..+.+++.++..+++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34444556666777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 196 (439)
+.+++.|++.|++.+.. +...+.+.|+++++++++..+.......+|..++|.+++++.+.+|||..|++.+++.++..
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999999999998877 55567889999999999999999999999999999999999999999999998887777766
Q ss_pred HHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHh
Q 013655 197 LLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEA 276 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (439)
+..++++++++. ++.++.
T Consensus 175 ~~~~~~~~~~~~----~~~~~~---------------------------------------------------------- 192 (401)
T PRK11043 175 LPTLRLKPSKKA----RKQSQD---------------------------------------------------------- 192 (401)
T ss_pred HHHHHcCCCCCc----cccchH----------------------------------------------------------
Confidence 655555543210 000000
Q ss_pred hhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc
Q 013655 277 KEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN 356 (439)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 356 (439)
..+++++++++..+..... ..+....++....+.|.+.++ .|.+....
T Consensus 193 -------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~----------~g~s~~~~ 240 (401)
T PRK11043 193 -------------------ALTFKQLLKSKTYLGNVLI---FAACSAAFFAWLTGSPFILEQ----------MGYSPADI 240 (401)
T ss_pred -------------------HHHHHHHHcChhHHHHHHH---HHHHHHHHHHHHHHhHHHHHH----------cCCCHHHH
Confidence 0033444443332222211 112222333334445555432 23555555
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hh--ccccchhhhHHHHHHhhhhheeeeeeee
Q 013655 357 YGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL---LF--QQPKGLTTGLLFGARICITVTFTVVYVY 431 (439)
Q Consensus 357 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 431 (439)
+.......++.++|+++.+++.||+++|+.........+++.+.+ .. .++.+.......+.+++.+..++.....
T Consensus 241 g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (401)
T PRK11043 241 GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQ 320 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677888999999999999998887655544443333222 22 2223333344556677777777776666
Q ss_pred ccccccC
Q 013655 432 APEVSHR 438 (439)
Q Consensus 432 ~~e~~p~ 438 (439)
..|..|+
T Consensus 321 ~~~~~~~ 327 (401)
T PRK11043 321 ALRPFPQ 327 (401)
T ss_pred HhhhCcc
Confidence 5555553
No 48
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.95 E-value=9.4e-27 Score=222.45 Aligned_cols=170 Identities=18% Similarity=0.298 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655 37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
.++..........+..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 34566677778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHhhcccchhHHHHHhHHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA-GIAWLVMPRLGWRWLLGLSAFPSSL 194 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~-~l~~~l~~~~g~~~~~~~~~~~~~~ 194 (439)
++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+||..|++.+++.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999999999999999988 77788999999999999999999999999999999 4677777788999999888877666
Q ss_pred HHHH-HhcccCCc
Q 013655 195 LLLL-YSVTPESP 206 (439)
Q Consensus 195 ~~~~-~~~~~~~~ 206 (439)
..+. .++.++++
T Consensus 163 ~~~~~~~~~~~~~ 175 (379)
T TIGR00881 163 VSLICFLLLRDSP 175 (379)
T ss_pred HHHHHheeeCCCc
Confidence 5443 44555543
No 49
>PRK10504 putative transporter; Provisional
Probab=99.95 E-value=5.9e-25 Score=216.46 Aligned_cols=362 Identities=14% Similarity=0.099 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
++.++++.+...+......+..|.+.+++|.|..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655 111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA 189 (439)
Q Consensus 111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~ 189 (439)
+.++++++.+++.|++.|++.+.. +...+.+.|++|+++|+++.|+.....++|..++|.+++++.+..|||+.|.+..
T Consensus 92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 888999999999999999999988 7777889999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHH-hcccCCchhhhhccchHHHHHHHH------HHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCc
Q 013655 190 FPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLE------KIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTT 262 (439)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (439)
...++..+.. ...|+.+.. +.+.+....... .....++.+. ... ........--.
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~------------- 233 (471)
T PRK10504 172 PVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVGMATLTLALDGSKG-LGL-SPLAIAGLVAV------------- 233 (471)
T ss_pred HHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHHHHHHHHHHhcCCc-CCc-chHHHHHHHHH-------------
Confidence 6666554443 333443211 111111110000 0000000000 000 00000000000
Q ss_pred hhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcc
Q 013655 263 PKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC 342 (439)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
..-... . ...+++...+ +..+.+ +++++.+...+...+... ..+.....+.|.+.+.
T Consensus 234 ~~~~~~-~-~~~~~~~~~~-------------~~~~~~-l~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~---- 290 (471)
T PRK10504 234 GVVALL-L-YLLHARNNNR-------------ALFSLK-LFRTRTFSLGLAGSFAGR---IGSGMLPFMTPVFLQI---- 290 (471)
T ss_pred HHHHHH-H-HHHHHhcCCC-------------CccCHH-HhcccchHHHHHHHHHHH---HHHHHHHHHHHHHHHH----
Confidence 000000 0 0000000000 000222 444443333333222222 2222222333433321
Q ss_pred cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-ccc--hhhhHHHHHHh
Q 013655 343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-PKG--LTTGLLFGARI 419 (439)
Q Consensus 343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~ 419 (439)
..|.+....++......++.+++.++.+++.||+|||+++..+..+.++..+.+.+.. ..+ ......++.|+
T Consensus 291 -----~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 365 (471)
T PRK10504 291 -----GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGM 365 (471)
T ss_pred -----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 1235555667777777888888889999999999999999888887777665555432 111 22233455566
Q ss_pred hhhheeeeeeeeccccccC
Q 013655 420 CITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 420 ~~~~~~~~~~~~~~e~~p~ 438 (439)
+.+..++....+..+.+|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~ 384 (471)
T PRK10504 366 VNSTRFSSMNTLTLKDLPD 384 (471)
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 6666666666666666664
No 50
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.95 E-value=1.8e-25 Score=213.56 Aligned_cols=309 Identities=17% Similarity=0.115 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHHHHHHHHHHhhc
Q 013655 37 GWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI-TAIVTSAAGLLSAFA 114 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~ 114 (439)
.++...+......+.+|. +.+++|.|..+.|++.+++.+...+.+++.|+++||+||||.++. +..+.+++.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666676665 567899999999999999999999999999999999999887654 555666677788889
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhH--HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFW--MVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP 191 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~--~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~ 191 (439)
++++.+++.|++.|.+.+.. +...++..|+.|+++|++. .+....+.++|..++|++++++.+.+|||..|++.+++
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 99999999998888777666 6666777888887777654 57888888999999999999999999999999998887
Q ss_pred HHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccC
Q 013655 192 SSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE 270 (439)
Q Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (439)
.++..+. ++++||.|+...++. + + .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~---~-~-----------~--------------------------------------- 190 (375)
T TIGR00899 165 FVLCGVLVWLFLPSYPRGAPGAL---T-R-----------L--------------------------------------- 190 (375)
T ss_pred HHHHHHHHHHhCCCcccCccccc---C-c-----------c---------------------------------------
Confidence 7666554 445676542100000 0 0 0
Q ss_pred CchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCccccccccc
Q 013655 271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS 349 (439)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (439)
+.++.++++..+.... .++.+..... ...+.|.+..+ +.
T Consensus 191 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~ 230 (375)
T TIGR00899 191 ---------------------------EVRGLLASRDTRLLFVACTLMWGCNIL----YIINMPLLIIH---------EL 230 (375)
T ss_pred ---------------------------hhhhhhcCcchHHHHHHHHHHHHHHHH----HHhhhHHHHHH---------Hc
Confidence 0111122222222222 2222221111 12222333211 12
Q ss_pred CCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeee
Q 013655 350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY 429 (439)
Q Consensus 350 g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 429 (439)
|.+....+.......+..+++.++.|++.||+|||+.+..+..+..+..+.+...++.+......++.+++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666667788899999999999999988877776666555554445555455555666777777677777
Q ss_pred eeccccccCC
Q 013655 430 VYAPEVSHRS 439 (439)
Q Consensus 430 ~~~~e~~p~~ 439 (439)
.+..|..|++
T Consensus 311 ~~~~~~~~~~ 320 (375)
T TIGR00899 311 LYFQDLMPGR 320 (375)
T ss_pred HHHHHhCcch
Confidence 7788887753
No 51
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.94 E-value=5.9e-25 Score=207.68 Aligned_cols=291 Identities=29% Similarity=0.384 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
+....+..........+..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34556667777778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
.++++.+++.|++.|++.+.. +...+++.|++|+++|++.+++.+.+..+|..++|.+++.+.+..+|+..+++.+++.
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999988 7778999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655 193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 272 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
++..+...+++
T Consensus 164 ~~~~~~~~~~~--------------------------------------------------------------------- 174 (352)
T cd06174 164 LLLALLLLFLL--------------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 77665544432
Q ss_pred hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCC
Q 013655 273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS 352 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 352 (439)
+..+...+..+...........+.+.+..+. .+.+
T Consensus 175 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 209 (352)
T cd06174 175 ------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV---------LGLS 209 (352)
T ss_pred ------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---------cCCC
Confidence 0112222222333333334444445444321 1355
Q ss_pred CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeee
Q 013655 353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKL-SMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY 431 (439)
Q Consensus 353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 431 (439)
....+.......++..++.++.+++.||+|||+ .+..+..+..++.+.+...++.+...+..++.+++.+...+....+
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 289 (352)
T cd06174 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL 289 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH
Confidence 556688888899999999999999999999999 9999999888888888777776677778888899999999999999
Q ss_pred ccccccC
Q 013655 432 APEVSHR 438 (439)
Q Consensus 432 ~~e~~p~ 438 (439)
..|..|+
T Consensus 290 ~~~~~~~ 296 (352)
T cd06174 290 ASELAPP 296 (352)
T ss_pred HHhhcCH
Confidence 9999885
No 52
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.94 E-value=7e-25 Score=210.23 Aligned_cols=315 Identities=14% Similarity=0.025 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
.+++.+...+.........+.+.++++.+..+.+++.+.+.+++.+.++++|+++||+|||++++.+.++.+++.+++.+
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~ 87 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF 87 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 34555555555545555556678899999999999999999999999999999999999999999999999888877766
Q ss_pred cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
..+. ++.|+++|++.+.. +...+++.|++|+++|++++|+.+....+|..+||.+++++.+. .|+..+.+.+...
T Consensus 88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~ 163 (393)
T PRK11195 88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY 163 (393)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 6554 67899999999988 78889999999999999999999999999999999999999885 4777777666655
Q ss_pred HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655 193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 272 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
++..+..+.+||++....++ +.+.....++.
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~----------------------------------------------- 194 (393)
T PRK11195 164 LLAALFNLFIPRLGARRPGQ--SWNPIALLRDF----------------------------------------------- 194 (393)
T ss_pred HHHHHHHhcCCCCccccccc--CCCHHHHHHHH-----------------------------------------------
Confidence 55555556677654211000 00000000000
Q ss_pred hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655 273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK 351 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 351 (439)
+..++.+++++..+.... ..+.+.+.....+....|.+... +.
T Consensus 195 -----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------g~ 238 (393)
T PRK11195 195 -----------------------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL-------------GI 238 (393)
T ss_pred -----------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CC
Confidence 002333444433333222 22233333333333334444332 35
Q ss_pred CCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeee
Q 013655 352 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY 431 (439)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 431 (439)
+....+......+++.++|.++.+++.||.++++.+..+.. .++..+.+.+.++.+......++.|++.+...+...+.
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~ 317 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNAL 317 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 56667888888899999999999999999988887776653 33433334444444444555667777777666666666
Q ss_pred ccccccC
Q 013655 432 APEVSHR 438 (439)
Q Consensus 432 ~~e~~p~ 438 (439)
..+..|+
T Consensus 318 ~q~~~~~ 324 (393)
T PRK11195 318 LQHRGHV 324 (393)
T ss_pred HHhhCcc
Confidence 6665543
No 53
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.94 E-value=6.9e-25 Score=209.87 Aligned_cols=308 Identities=17% Similarity=0.149 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
++.+..+.+..........+..|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655 111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA 189 (439)
Q Consensus 111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~ 189 (439)
..++++++.++++|++.|++.+.. +...+.+.+..++++|+++++..+.+.++|..+||.+++.+.+...|...+....
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 167 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL 167 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 999999999999999999999887 6666777888899999999999999999999999999999877543433333221
Q ss_pred HHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhccc
Q 013655 190 FPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARD 269 (439)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (439)
+ ...... ..+.+.+++ +.++ + +
T Consensus 168 ~-~~~~~~-~~~~~~~~~----~~~~-~----------------~----------------------------------- 189 (381)
T PRK03633 168 V-LAAILP-LLFTRILNQ----QAEN-H----------------D----------------------------------- 189 (381)
T ss_pred H-HHHHHH-HHHhcccCC----CCCC-C----------------C-----------------------------------
Confidence 1 111111 111111100 0000 0 0
Q ss_pred CCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccccc
Q 013655 270 EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS 349 (439)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (439)
. .+.+++++++..+......+. ....+.....+.|.+..+ .
T Consensus 190 -------------~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~~~----------~ 230 (381)
T PRK03633 190 -------------S-------------TSIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYLNH----------Q 230 (381)
T ss_pred -------------C-------------CCHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHH----------c
Confidence 0 011122222222222111111 112222233345555533 2
Q ss_pred CCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeee
Q 013655 350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY 429 (439)
Q Consensus 350 g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 429 (439)
|.+....+...+...++.+++++..|++.||+|+|+.+..+..+.+++.+.+. .. .......++.+++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHH
Confidence 35555567777888889999999999999999999988887777766655443 11 1222334445555555667777
Q ss_pred eeccccccC
Q 013655 430 VYAPEVSHR 438 (439)
Q Consensus 430 ~~~~e~~p~ 438 (439)
+.+.|..|+
T Consensus 308 ~~~~~~~~~ 316 (381)
T PRK03633 308 AWACEKVEH 316 (381)
T ss_pred HHHHccCCH
Confidence 777777764
No 54
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.94 E-value=1.3e-24 Score=209.43 Aligned_cols=303 Identities=15% Similarity=0.087 Sum_probs=198.8
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh---h-cchHHHHHH
Q 013655 47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA---F-APNYYLLLF 122 (439)
Q Consensus 47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 122 (439)
....+.+.+.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++. . .++++.+++
T Consensus 31 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL 110 (402)
T ss_pred hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence 333445566688999999999999999999999999999999999999999999998888766542 3 357888899
Q ss_pred HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-H
Q 013655 123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGT-ILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-Y 199 (439)
Q Consensus 123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~ 199 (439)
.|++.|++.+.. +.....+.+++|+++|++++|+.+.+.++|. .++|++++++.+.+||+..++......++..++ .
T Consensus 111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 190 (402)
T TIGR00897 111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIAL 190 (402)
T ss_pred HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999998776 5566778899999999999999999999996 589999999998889766655443333333332 2
Q ss_pred hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655 200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM 279 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (439)
++.++.++... ++++++ .
T Consensus 191 ~~~~~~~~~~~-~~~~~~----~--------------------------------------------------------- 208 (402)
T TIGR00897 191 FSNKDIFTPQH-MQTREK----F--------------------------------------------------------- 208 (402)
T ss_pred hccCCCCCccc-ccCCcc----h---------------------------------------------------------
Confidence 33333211000 000000 0
Q ss_pred cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhh
Q 013655 280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD 359 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 359 (439)
++....++.+++++.. +...+..++....++....+.|.+..+ .|.+....+..
T Consensus 209 -------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~g~s~~~~~~~ 262 (402)
T TIGR00897 209 -------------SELGKAATILFTNPNV---LLGGMVRIINTIGLFGFAVFLPMFVAE----------LGFSTSEWLQI 262 (402)
T ss_pred -------------hhHHHHHHHHHcChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChhHHHHH
Confidence 0000023445544432 333333444555566666777777643 33666666677
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhh-----ccccchhhhHHHHHHhhhhheeeeeeeecc
Q 013655 360 VFITSFAEFPGLLLAAAMVDRLGRKLSMS-SMFFCCCIFLVPLLF-----QQPKGLTTGLLFGARICITVTFTVVYVYAP 433 (439)
Q Consensus 360 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 433 (439)
.....++.++++++.|+++||++||+.+. .+.+.++++.+.+.. .++.+...+..++.|++.+...+. .....
T Consensus 263 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~ 341 (402)
T TIGR00897 263 WGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFP 341 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 77788899999999999999999887653 333333332222221 123333445566666666554443 33445
Q ss_pred ccccC
Q 013655 434 EVSHR 438 (439)
Q Consensus 434 e~~p~ 438 (439)
|..|+
T Consensus 342 ~~~~~ 346 (402)
T TIGR00897 342 TLAPK 346 (402)
T ss_pred hhCcc
Confidence 55553
No 55
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=220.17 Aligned_cols=323 Identities=31% Similarity=0.477 Sum_probs=252.4
Q ss_pred hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-
Q 013655 56 QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG- 134 (439)
Q Consensus 56 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~- 134 (439)
.+.+..+.....+..+++.+|..+|.+++|.++||+|||++++.+.++..++.++.++++|++.+++.|++.|++.+..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 3556678888899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccc
Q 013655 135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGR 214 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
.+...++.|++++++|+.+..+ ......++.+++++++++.. +||+.+++..++.++.++.+++.||+|+|...+++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~ 266 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR 266 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc
Confidence 7788999999999999999999 77778888888888888877 89999999999998887777777899999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccch
Q 013655 215 TAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMG 294 (439)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (439)
.+++.+.+++..+.++........ .+. .....+ .+.....
T Consensus 267 ~~~a~~~l~~~a~~n~~~~~~~~~-------~~~---------------------~~~~~~------------~~~~~~~ 306 (521)
T KOG0255|consen 267 IDEAIKILKKIAKLNGRKLSVKEL-------LRL---------------------ELLLRP------------LKLLFTE 306 (521)
T ss_pred hHHHHHHHHHHHhhcCCCCCcHHH-------HHH---------------------HHHhhH------------hhhhccC
Confidence 999888888877655221110000 000 000000 0000000
Q ss_pred hHHHHHHhhCh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHH
Q 013655 295 GITALLILLSP-ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLL 373 (439)
Q Consensus 295 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~ 373 (439)
+...+.++++. +.++.++...+.++.....+|+.......+.. ..+......+....++...
T Consensus 307 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~-----------------~~~~~~~~~~~~~~p~~~~ 369 (521)
T KOG0255|consen 307 PKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGG-----------------NIYLNFTLSGLVELPAYFR 369 (521)
T ss_pred CCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCc-----------------hHHHHHHHHHHHHhhHHHH
Confidence 11146677764 47788888888988888898888776654331 1245566666688889999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccc---hhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655 374 AAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG---LTTGLLFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 374 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.+...|++|||..+..+..+..++++...+..... ...+...+..++.+..+...+.+.+|++|+
T Consensus 370 ~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt 437 (521)
T KOG0255|consen 370 NGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT 437 (521)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 99999999999999999999999888877654432 345556666666777777779999999986
No 56
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.94 E-value=2.4e-24 Score=207.08 Aligned_cols=169 Identities=22% Similarity=0.209 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655 37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
..+..........+..|.+.+++|.|..+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.++..++++
T Consensus 11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~ 90 (392)
T PRK10473 11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET 90 (392)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence 33444455555567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+|+..+++.+++.++.
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence 999999999999998887 6777899999999999999999999999999999999999888899999999888776665
Q ss_pred HHH-HhcccCC
Q 013655 196 LLL-YSVTPES 205 (439)
Q Consensus 196 ~~~-~~~~~~~ 205 (439)
.++ .+.+||+
T Consensus 171 ~~~~~~~~~~~ 181 (392)
T PRK10473 171 LLLSLFILKET 181 (392)
T ss_pred HHHHHHHcCCC
Confidence 444 4455554
No 57
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.94 E-value=2.1e-25 Score=217.19 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655 26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS 105 (439)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 105 (439)
.++..++...+.+..............|.+.+ +|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 34555666666666666666666777787776 59999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhc----chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 013655 106 AAGLLSAFA----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RL 179 (439)
Q Consensus 106 ~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~ 179 (439)
++.++..+. ++++.+.+.|++.|++.+.. +.....+.|++|+++||+++|+.+.+.++|..+++++.+...+ ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 888877654 46777888999999999887 6677888999999999999999999999999999988776544 46
Q ss_pred chhHHHHHhHHHHHHHH-HHHhcccCCc
Q 013655 180 GWRWLLGLSAFPSSLLL-LLYSVTPESP 206 (439)
Q Consensus 180 g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 206 (439)
+||..|++.+++.++.. +.++++||+|
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 89999999888777654 4455566654
No 58
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.94 E-value=1.8e-25 Score=216.58 Aligned_cols=312 Identities=15% Similarity=0.062 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh-----
Q 013655 38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA----- 112 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~----- 112 (439)
.+...+......+..|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence 444555556667778888888999999999999999999999999999999999999998888777776655443
Q ss_pred hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655 113 FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP 191 (439)
Q Consensus 113 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~ 191 (439)
..++++.+++.|++.|++.+.. +...+.+.++.|+++|+++.++.....++|..+||.+++.+.+..+|++.+++.++.
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~ 185 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG 185 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2567888999999999988876 666788899999999999999999999999999999999999888999999888877
Q ss_pred HHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCC
Q 013655 192 SSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDED 271 (439)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (439)
.++..+..+.+|+.++.. +++. +. .+
T Consensus 186 ~~~~~~~~~~l~~~~~~~--~~~~-~~---~~------------------------------------------------ 211 (417)
T PRK10489 186 TFITLLPLLRLPALPPPP--QPRE-HP---LR------------------------------------------------ 211 (417)
T ss_pred HHHHHHHHHhCCCCCCCC--cccc-cc---hH------------------------------------------------
Confidence 776666666666543210 0000 00 00
Q ss_pred chhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655 272 SISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK 351 (439)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 351 (439)
+....++.+++++..+...+..+.... ......+.|.+..+. .|.
T Consensus 212 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~---------~g~ 256 (417)
T PRK10489 212 ----------------------SLLAGFRFLLASPVVGGIALLGGLLTM----ASAVRVLYPALADEV---------WQM 256 (417)
T ss_pred ----------------------HHHHHHHHHHcChHHHHHHHHHHHHHH----HHhHHHhhHHHHHhc---------cCC
Confidence 000134444544443333322222111 223344556665431 235
Q ss_pred CCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeee
Q 013655 352 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVY 431 (439)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 431 (439)
+....+...+...++.+++.++.+++.||.++++.+..+.++.++..+.+.+.++.+...+..++.|++.+...+...++
T Consensus 257 ~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (417)
T PRK10489 257 GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTL 336 (417)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888889999999999999999877777777777777776666655555555566667777776666666777
Q ss_pred ccccccC
Q 013655 432 APEVSHR 438 (439)
Q Consensus 432 ~~e~~p~ 438 (439)
+.|.+|+
T Consensus 337 ~~~~~p~ 343 (417)
T PRK10489 337 LQTQTPD 343 (417)
T ss_pred HHhhCCH
Confidence 8888775
No 59
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.94 E-value=5e-25 Score=215.14 Aligned_cols=346 Identities=10% Similarity=0.029 Sum_probs=229.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
.+.++|.++....+............+.+.|.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus 13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 92 (455)
T TIGR00892 13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL 92 (455)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence 34556766666666655544455556778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHH-HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 103 VTSAAGLLSAFAPNYYLLLF-FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
+.+++.++++++++++.+++ .|++.|++.+.. ++....+.++++ ++|+++.|+.+.+..+|..++|++++++.+.+|
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 93 LASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999888765 568999999876 666677788885 789999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCC
Q 013655 181 WRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDD 260 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
||..|++.+++.++..+..+++.+.+... +....+. .++. +. ++.
T Consensus 172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~---------~~~~--~~----------------------~~~ 216 (455)
T TIGR00892 172 WRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS---------KEGL--PP----------------------DGS 216 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc---------cccC--CC----------------------CCc
Confidence 99999999887776655444432221100 0000000 0000 00 000
Q ss_pred CchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 013655 261 TTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQN 340 (439)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (439)
.... +.+ .. .++..+...+ .+++++..+ ......+.....++....+.+.+..+
T Consensus 217 ~~~~---~~~--------~~---------~~~~~~~~~~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~-- 270 (455)
T TIGR00892 217 TKKL---SKK--------ST---------AEKINRFLDF-SLFTHRGFL---VYLSGNVIMFLGFFAPIIFLVPYAKD-- 270 (455)
T ss_pred cccc---ccc--------ch---------hhhhhhhcch-HHhcCchHH---HHHHHHHHHHHHccchHHHHHHHHHH--
Confidence 0000 000 00 0000000012 233333322 22222333334444555555655533
Q ss_pred cccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh--hhHHHHH--HHHHHHHHHHHHHhhccccchhhhHHHH
Q 013655 341 KCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMS--SMFFCCCIFLVPLLFQQPKGLTTGLLFG 416 (439)
Q Consensus 341 ~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (439)
.+.+...++...+..+++.++++++.|++.||. ++|+... .+.++.+++.+.....++.+...+..++
T Consensus 271 --------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~ 342 (455)
T TIGR00892 271 --------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF 342 (455)
T ss_pred --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 236666678888888999999999999999973 3333222 2333333444444445555555666778
Q ss_pred HHhhhhheeeeeeeeccccccC
Q 013655 417 ARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 417 ~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.|++.+...+..++++.|.+|+
T Consensus 343 ~G~~~g~~~~~~~~~~~~~~~~ 364 (455)
T TIGR00892 343 FGLSFGSVGALLFEVLMDLVGA 364 (455)
T ss_pred HHHHhchHHHHHHHHHHHHhhH
Confidence 8888887778888888888775
No 60
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.94 E-value=2.5e-24 Score=207.03 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 013655 29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG 108 (439)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 108 (439)
+.+++.........+......+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 87 (394)
T PRK11652 8 NLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGT 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence 33444444444555666677777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655 109 LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL 187 (439)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~ 187 (439)
++..++++++.+++.|++.|++.+.. +....+..|.+++++++++.++.+.+..+|..++|.+++++.+..|||..|++
T Consensus 88 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 88 LVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred HHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 99889999999999999999998876 55567788999999999999999999999999999999999998999999998
Q ss_pred hHHHHHHHHH-HHhcccCC
Q 013655 188 SAFPSSLLLL-LYSVTPES 205 (439)
Q Consensus 188 ~~~~~~~~~~-~~~~~~~~ 205 (439)
.++..++..+ ..++.||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 168 LLLLGAGVTFSMARWMPET 186 (394)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 8776655443 34555664
No 61
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.94 E-value=1.9e-24 Score=208.98 Aligned_cols=316 Identities=18% Similarity=0.162 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-----hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ-----ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA 107 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 107 (439)
..+++.+..........+++|.+.+++|.+..+ .|++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 344555666777777788889999999998655 488999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655 108 GLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL 187 (439)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~ 187 (439)
.++..+.++++.+++.|++.|++.+..+.....+.+.+|+++|+++.++...+..+|..++|.+++.+.+..+|+..|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888889999999999999998665566667888999999999999999999999999999999999998999999998
Q ss_pred hHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655 188 SAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM 266 (439)
Q Consensus 188 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
.+++.++..+. .++++++++.. ++++ ....++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~------------------------------------------ 210 (408)
T PRK09874 178 TASVLFLCFLVTLFCIRENFQPV----SKKE-MLHMRE------------------------------------------ 210 (408)
T ss_pred HHHHHHHHHHHHHHHhccCcccc----cchh-hhHHHH------------------------------------------
Confidence 88777665554 34445432100 0000 000000
Q ss_pred cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655 267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE 346 (439)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
..+.+.+++.........+.. .........+.+.+..+..
T Consensus 211 -------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------ 250 (408)
T PRK09874 211 -------------------------------VVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRELA------ 250 (408)
T ss_pred -------------------------------HHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh------
Confidence 111111122222121111111 1111111222232321110
Q ss_pred cccCCCCCC---chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhh
Q 013655 347 LQSGKSRDI---NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITV 423 (439)
Q Consensus 347 ~~~g~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 423 (439)
+...+. .+....+.+++.+++.+..|++.||+|||+.+..+..+.++..+.+.+.++.+...+..++.|++.+.
T Consensus 251 ---~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 327 (408)
T PRK09874 251 ---GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGA 327 (408)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHh
Confidence 011111 23444556677888899999999999999999888887777766666555555555666677887777
Q ss_pred eeeeeeeeccccccC
Q 013655 424 TFTVVYVYAPEVSHR 438 (439)
Q Consensus 424 ~~~~~~~~~~e~~p~ 438 (439)
..+...+...+..|+
T Consensus 328 ~~~~~~~~~~~~~~~ 342 (408)
T PRK09874 328 LLPAVQTLLVYNSSN 342 (408)
T ss_pred hHHHHHHHHHHhCCc
Confidence 776666655555543
No 62
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.94 E-value=1.3e-24 Score=207.94 Aligned_cols=162 Identities=20% Similarity=0.317 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 013655 44 EMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF 123 (439)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (439)
......+..|.+.+++|+|+.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-Hhc
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSV 201 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~ 201 (439)
|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+||..|++.+++.++..+. .+.
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887 6777899999999999999999999999999999999999999899999998888777665444 445
Q ss_pred ccCC
Q 013655 202 TPES 205 (439)
Q Consensus 202 ~~~~ 205 (439)
.||+
T Consensus 166 ~~~~ 169 (377)
T PRK11102 166 IPET 169 (377)
T ss_pred CCcc
Confidence 5554
No 63
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.94 E-value=7.8e-25 Score=207.67 Aligned_cols=306 Identities=14% Similarity=0.130 Sum_probs=212.6
Q ss_pred HHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-----chhHH-HHHHHHHHHHHHHHHhhc---ch
Q 013655 46 MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-----GRRKG-FLITAIVTSAAGLLSAFA---PN 116 (439)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~---~~ 116 (439)
...++..|.+.+++|+|.++.|+.... .+...+ .+++|+++||+ ||||. ++.+.++.+++..+.++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 455677889999999999999999755 444444 89999999998 89887 466777777776666666 45
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--------hhHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--------WRWLLGL 187 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--------~~~~~~~ 187 (439)
.+.+....++.+++.+.. ++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+ ||..|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 666777777778777777 6777999999999999999999999999999999999999988888 9999999
Q ss_pred hHHHHHHHHHHHhc-ccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655 188 SAFPSSLLLLLYSV-TPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM 266 (439)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
.+++.++..+..++ .||+++. +...++.. ++
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~---~~------------------------------------------ 194 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQED---ASVPKPLT---QA------------------------------------------ 194 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCcc---cccchhHH---HH------------------------------------------
Confidence 88877776555443 4443110 00000000 00
Q ss_pred cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655 267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE 346 (439)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
....++++++++..+..+...+..++....++....+.+.+..+
T Consensus 195 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------- 238 (356)
T TIGR00901 195 ----------------------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-------- 238 (356)
T ss_pred ----------------------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 00134445544432233333333444445555555566666533
Q ss_pred cccCCCCCCchhhHHHHh-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----------cccchhhhHH
Q 013655 347 LQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-----------QPKGLTTGLL 414 (439)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 414 (439)
.|.+.+..+......+ +..++|.+++|++.||+|||+.+..+.++.++....+.+. ++.+......
T Consensus 239 --~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
T TIGR00901 239 --MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI 316 (356)
T ss_pred --cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence 2355555555555444 5678999999999999999998888887777665544332 1223344455
Q ss_pred HHHHhhhhheeeeeeeeccccccCC
Q 013655 415 FGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
++.+++.+...+...++..|.+|++
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~~~p~~ 341 (356)
T TIGR00901 317 TLEAVTGGLGTVAFVAFLSKLSNPK 341 (356)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCC
Confidence 6668888888899999999999975
No 64
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.94 E-value=2.7e-24 Score=206.59 Aligned_cols=313 Identities=22% Similarity=0.266 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcC--CCchhhHHHHHH-----HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh
Q 013655 40 SEAMEMMLLSFVGPAVQSLWH--LSPNQESLITSV-----VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA 112 (439)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~-----~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~ 112 (439)
...++.+..++..+.+.+++. .+..+.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777654 445555554443 3344457889999999999999999999999999999999
Q ss_pred hcchHH--------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-------
Q 013655 113 FAPNYY--------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM------- 176 (439)
Q Consensus 113 ~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~------- 176 (439)
++++++ .+++.|++.|++.+.. +....++.|+.++++|++..++...+..+|..+++.+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 988865 4788999999999888 777789999999999999999999999999999998876653
Q ss_pred -cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCC
Q 013655 177 -PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS 255 (439)
Q Consensus 177 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (439)
+.++||..|++.+++.++..+.....+|+++....+ ++.+..
T Consensus 164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~--------------------- 206 (394)
T TIGR00883 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ----------------EKHKKK--------------------- 206 (394)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH----------------hccccc---------------------
Confidence 357899999887776666555544455543210000 000000
Q ss_pred CCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655 256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL 335 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (439)
..++++.++++. +.++......+.....++....+.|.+
T Consensus 207 ----------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T TIGR00883 207 ----------------------------------------RGPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTY 245 (394)
T ss_pred ----------------------------------------cCCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001222332221 223333334444444555555666666
Q ss_pred hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHH-hh--ccccchhh
Q 013655 336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFL-VPL-LF--QQPKGLTT 411 (439)
Q Consensus 336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~-~~~-~~--~~~~~~~~ 411 (439)
..+ +.+.+....+.......+...++.++.|++.||+|||+.+..+..+..+.. ..+ .. .++.+...
T Consensus 246 ~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
T TIGR00883 246 LTQ---------TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFF 316 (394)
T ss_pred HHH---------hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 532 123555566777778888999999999999999999997765544443322 222 22 23334444
Q ss_pred hHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 412 GLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 412 ~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
...++.+++.+...+...++++|.+|++
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 344 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTE 344 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCcc
Confidence 5556677777777888889999999864
No 65
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.93 E-value=6.1e-24 Score=204.99 Aligned_cols=172 Identities=17% Similarity=0.110 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
+.+..+..........+.+|.+.++++.+..+.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 34444555666677778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
+++++.++++|+++|++.+.. +....++.|++|+++|++++++...+..+|..++|.+++.+.+..|||..|++.++..
T Consensus 101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999998765 4555778899999999999999999999999999999999998889999999988877
Q ss_pred HHHHHH-HhcccCC
Q 013655 193 SLLLLL-YSVTPES 205 (439)
Q Consensus 193 ~~~~~~-~~~~~~~ 205 (439)
++..+. .+.+||+
T Consensus 181 ~i~~~~~~~~lp~~ 194 (413)
T PRK15403 181 LIAFVGLLLAMPET 194 (413)
T ss_pred HHHHHHHHHhCCCC
Confidence 776554 4456765
No 66
>PRK10054 putative transporter; Provisional
Probab=99.93 E-value=3.7e-24 Score=205.34 Aligned_cols=311 Identities=12% Similarity=0.061 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655 36 MGWISEAMEMMLLSFVG-PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA 114 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 114 (439)
+..++.........+++ +++.+++|+|..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+.
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~ 93 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 45667899999999999999999999999999999999999999999999999999889999
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS 193 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~ 193 (439)
++++.+++++++.|.+.+.. +...++..|..|+++|++++|+.....++|..++|++++++.+ .+|+..|++.+++.+
T Consensus 94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA 172 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence 99999988898888776666 6677888999999999999999999999999999999999875 799999998887777
Q ss_pred HHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655 194 LLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 272 (439)
Q Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
+..+. .+++|++++. ++.++ .+ .
T Consensus 173 i~~i~~~~~~~~~~~~----~~~~~-~~---~------------------------------------------------ 196 (395)
T PRK10054 173 FPLVFIQIWVQRSEKA----IATET-GS---V------------------------------------------------ 196 (395)
T ss_pred HHHHHHHHHHhccccc----cccch-hh---h------------------------------------------------
Confidence 66444 3445544210 00000 00 0
Q ss_pred hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCC
Q 013655 273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGK 351 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 351 (439)
+ ..+.+++++..+.... .++..+. +.....+.+.+..... +.+.
T Consensus 197 -----------------------~-~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~-------~~~~ 241 (395)
T PRK10054 197 -----------------------W-SPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMVVA-------DSDF 241 (395)
T ss_pred -----------------------h-hhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHHhc-------ccch
Confidence 0 1122233222222222 2221111 1111112222221100 1223
Q ss_pred CCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-cccchhhhHHHHHHhhhhheeeeeee
Q 013655 352 SRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-QPKGLTTGLLFGARICITVTFTVVYV 430 (439)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 430 (439)
+....+.......+..+...+..|.+.||.++|+.+..+..+.++..+.+.+. ++.+...+...+.+++.+...|....
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33334566667767777778889999999999999888887777776666543 34444455667777777776677666
Q ss_pred eccccccC
Q 013655 431 YAPEVSHR 438 (439)
Q Consensus 431 ~~~e~~p~ 438 (439)
.+.+..|+
T Consensus 322 ~~~~~~p~ 329 (395)
T PRK10054 322 LIDHIAPP 329 (395)
T ss_pred HHHHhCCc
Confidence 77776665
No 67
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.2e-26 Score=208.35 Aligned_cols=182 Identities=20% Similarity=0.281 Sum_probs=167.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 103 (439)
.+..+..+.++++....+.++.+.+....+.+.+.+|++++..|++.+.+.+.+.+++|++|+++||+.||+++.+|..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34456667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-h
Q 013655 104 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-W 181 (439)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~ 181 (439)
+.++.++.+++..+|+++++|.+.|+|.+.+ +..+++++|.+|..+|++++++++.+..+|..+|.+.+..+.+..+ |
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999999 8899999999999999999999999999999999999998887766 9
Q ss_pred hHHHHHhHHHHHHHHHHH-hcccCC
Q 013655 182 RWLLGLSAFPSSLLLLLY-SVTPES 205 (439)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (439)
|+.|...+++.++..++. ++.+|+
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCc
Confidence 999999999998876664 445554
No 68
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.93 E-value=2.6e-23 Score=199.89 Aligned_cols=296 Identities=12% Similarity=0.050 Sum_probs=205.3
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
++..+++.+++|+|..+.|++.+...+...+.++++|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|
T Consensus 31 ~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 110 (400)
T PRK11646 31 PLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSG 110 (400)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-HhcccCCc
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESP 206 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~ 206 (439)
++.+.. +...+++.+++|+++|++++|+.....++|..+||.+++++. .+||+..|++.++..++..++ .+..|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~ 189 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK 189 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 998877 667788999999999999999999999999999999999998 689999999887776655433 33444321
Q ss_pred hhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccch
Q 013655 207 RYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTS 286 (439)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (439)
. +...++.
T Consensus 190 ~----~~~~~~~-------------------------------------------------------------------- 197 (400)
T PRK11646 190 L----STVRTPV-------------------------------------------------------------------- 197 (400)
T ss_pred c----cccchhh--------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred hhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhh
Q 013655 287 TLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366 (439)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 366 (439)
..+++.+++++............ ...+.....+.|.+..+. +.+....+......++.
T Consensus 198 ---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~----------~~~~~~~g~l~~~~~~~ 255 (400)
T PRK11646 198 ---------REGMTRVLRDKRFVTYVLTLTGY---YMLAVQVMLMLPIMVNDI----------AGSPSAVKWMYAIEACL 255 (400)
T ss_pred ---------HHHHHHHHcCchHHHHHHHHHHH---HHHHHHHHHhhhhhHHhh----------cCCchHHHHHHHHHHHH
Confidence 00333344433222222221111 111112234456555332 23444445555666665
Q ss_pred hhhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 367 EFPGLLLAAAMV-DRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 367 ~~~g~~~~g~l~-dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
...+....+++. ||++.++.+..+..+.+++.+.+...++.+...+...+.+.+.+...|...++..+..|++
T Consensus 256 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~ 329 (400)
T PRK11646 256 SLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADAR 329 (400)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc
Confidence 555554445555 4566566666777677776666655555544445556667777777777788888888753
No 69
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.93 E-value=3.1e-24 Score=203.40 Aligned_cols=292 Identities=19% Similarity=0.182 Sum_probs=206.0
Q ss_pred HHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 013655 46 MLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125 (439)
Q Consensus 46 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (439)
...++.+|.+.+++|+|..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.. ..++++.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999999998888877776 6788999999999
Q ss_pred HHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHHHhcc
Q 013655 126 LVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL--GWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 126 l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
+.|++.+.. ......+.++++ ++|++++++.+.+.++|..+++.+.+.+.+.. +||..|...++..++... .++
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~ 172 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWI 172 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence 999998876 555667778775 68999999999999999999999999887765 399888776655443322 223
Q ss_pred cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhcccc
Q 013655 203 PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSE 282 (439)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (439)
|+.++ +.++ ++ +. .
T Consensus 173 ~~~~~------~~~~-------------~~-~~--------------------------------------------~-- 186 (355)
T TIGR00896 173 PQVRR------RVAA-------------NQ-TT--------------------------------------------T-- 186 (355)
T ss_pred hhhcc------ccCC-------------CC-CC--------------------------------------------C--
Confidence 33210 0000 00 00 0
Q ss_pred ccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHH
Q 013655 283 DSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFI 362 (439)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 362 (439)
+ ...+++++++..+ ...+..++....++....+.|.+..+ .|.+....+...+.
T Consensus 187 ~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lp~~~~~----------~g~~~~~~g~~~~~ 240 (355)
T TIGR00896 187 R-------------LTPVRIWRSPLAW---QVTVFFGLQSGLYYSLIGWLPAILIS----------HGASAATAGSLLAL 240 (355)
T ss_pred C-------------CCCchhhcCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHH
Confidence 0 0111223332222 22222333444555566667766643 23666667888888
Q ss_pred HhhhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccc
Q 013655 363 TSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPE 434 (439)
Q Consensus 363 ~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e 434 (439)
..++.++++++.|++.||+ +||..+..+.++.+++.+.+.+..+.... ...++.|++.+..++...+...+
T Consensus 241 ~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~ 312 (355)
T TIGR00896 241 MQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGL 312 (355)
T ss_pred HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHH
Confidence 9999999999999999999 56667777777777766655554332222 24566788887777765554443
No 70
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.93 E-value=2.1e-29 Score=246.75 Aligned_cols=344 Identities=29% Similarity=0.455 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhcCCC---------chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655 37 GWISEAMEMMLLSFVGPAVQ--SLWHLS---------PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS 105 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~--~~~~~s---------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 105 (439)
+.+..+++....++..+... ..++.+ ..+.++..+...++..+|++++|+++||+|||+.+.++.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~ 87 (451)
T PF00083_consen 8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI 87 (451)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 34555666655555444333 222222 2356889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc---hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 013655 106 AAGLLSAFAP---NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR--- 178 (439)
Q Consensus 106 ~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~--- 178 (439)
++.++..+++ +++.+.++|++.|++.|.. .....++.|..|+++||+..++.+.+..+|..++..++..+.+.
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 167 (451)
T PF00083_consen 88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDN 167 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999 9999999999999999998 77889999999999999999999999999998888777655433
Q ss_pred cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCC
Q 013655 179 LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNE 258 (439)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
.+||..+.+.+++.++..+...++||+|+|...+++.+++++..++.++.+..+ ++.++++
T Consensus 168 ~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-----------~~~~~~~-------- 228 (451)
T PF00083_consen 168 WGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED-----------EEIEEIK-------- 228 (451)
T ss_pred ccccccccccccccccccccccccccccceeccccccccccccccccccccccc-----------ccccccc--------
Confidence 349999999999988887778889999999998888888777666543211100 0000000
Q ss_pred CCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHH-HHHHHHHHHHHHHHHHh-hhHHHHHHHHhh
Q 013655 259 DDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPEL-IKSTLLLWLVFFGNAFS-YYGLVLLTTELN 336 (439)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 336 (439)
++.+++++. + .+++++++++. ++.+...+......... ++....+.+.+.
T Consensus 229 ------------~~~~~~~~~---------------~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~ 280 (451)
T PF00083_consen 229 ------------AEKKESQES---------------K-ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF 280 (451)
T ss_pred ------------ccccccccc---------------c-eeeeeccccccccccccccccccccccccccccccccccccc
Confidence 000000000 0 15666665432 33444433333333222 223333334433
Q ss_pred cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh--h---ccc----c
Q 013655 337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL--F---QQP----K 407 (439)
Q Consensus 337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~---~~~----~ 407 (439)
.. .+.+.. ........+...++.+++.+++||+|||+.+..+..+++++.+.+. . .+. .
T Consensus 281 ~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T PF00083_consen 281 EN----------AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS 348 (451)
T ss_pred cc----------cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22 223333 3344455567778888888999999999999988888877766553 1 111 1
Q ss_pred chhhhHHHHHHhhhh-heeeeeeeeccccccCC
Q 013655 408 GLTTGLLFGARICIT-VTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 408 ~~~~~~~~~~g~~~~-~~~~~~~~~~~e~~p~~ 439 (439)
.....+..+...+.+ +..+..+.+.+|++|++
T Consensus 349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~ 381 (451)
T PF00083_consen 349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTK 381 (451)
T ss_pred cccceeeeecccccccccccccccccccccccc
Confidence 222222333323333 55688889999999975
No 71
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.2e-23 Score=199.04 Aligned_cols=275 Identities=23% Similarity=0.348 Sum_probs=215.1
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhccCcc-
Q 013655 58 LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG- 134 (439)
Q Consensus 58 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~- 134 (439)
++++|..+.+++.+.+++|+.+++++.|+++||+|.|+++..+.++.+++.++.+++. +++.+++.|+++|++.|..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 5789999999999999999999999999999999999999999999999999998875 4567899999999999998
Q ss_pred hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHhcc-cCCchhhhhc
Q 013655 135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLLYSVT-PESPRYLCLK 212 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 212 (439)
++...+..+|.|+++|++..++..++..+|.+++.+++|++.+. +||+..|++.++..++..++++++ .|+|... +
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h--~ 224 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH--P 224 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC--C
Confidence 88889999999999999999999999999999999999999998 999999999999999887775544 5555321 1
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhcccc
Q 013655 213 GRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSN 292 (439)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (439)
.-.++ +++.+.+...++. . +
T Consensus 225 ~is~~---El~~I~~~k~~~~--------------------------------------------~------------~- 244 (466)
T KOG2532|consen 225 NISEK---ELKYIEKGKSEAH--------------------------------------------V------------K- 244 (466)
T ss_pred CCCHH---HHHHHHhcccccc--------------------------------------------c------------C-
Confidence 11111 1112211000000 0 0
Q ss_pred chhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHH
Q 013655 293 MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLL 372 (439)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~ 372 (439)
+.+..+++.+++.+-. +..++..++....++.+..+.|.|..+. .+++....++..++..+...+..+
T Consensus 245 ~~~~vP~~~i~ts~~v---wai~~~~f~~~~~~~~l~~y~PtY~~~V---------L~f~v~~~G~~salP~l~~~~~k~ 312 (466)
T KOG2532|consen 245 KKPPVPYKAILTSPPV---WAIWISAFGGNWGFYLLLTYLPTYLKEV---------LGFDVRETGFLSALPFLAMAIVKF 312 (466)
T ss_pred CCCCCCHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHH---------hCCChhhhhHHHHHHHHHHHHHHH
Confidence 0012388889987544 5556666677777777888888888653 347777889999999999999999
Q ss_pred HHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHhhccc
Q 013655 373 LAAAMVDRLGR---------KLSMSSMFFCCCIFLVPLLFQQP 406 (439)
Q Consensus 373 ~~g~l~dr~gr---------r~~~~~~~~~~~~~~~~~~~~~~ 406 (439)
++|.++||+-+ |..-.++....+++++.+.+.+.
T Consensus 313 ~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~ 355 (466)
T KOG2532|consen 313 VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD 355 (466)
T ss_pred HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence 99999998744 44456777777777777776553
No 72
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.92 E-value=3e-23 Score=198.53 Aligned_cols=310 Identities=12% Similarity=0.012 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH----HHHHHHHHHHHH
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGF----LITAIVTSAAGL 109 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~----~~~~~~~~~~~~ 109 (439)
+.+.++..........+++|.+.+++|.|..++|++.+.+.+...++++++|.++||+||+... ..+..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 3445666666677888889999999999999999999999999999999999999999985433 222222221 2
Q ss_pred HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
....+++++.+++.|++.|.+.+.. +...++..++ .++|++.+|....+.++|.+++|++++++.+.+|||..|.+.
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 3346788999999999999887776 6666665553 477899999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655 189 AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR 268 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
++..++..+ .+.++++++. +++.++ . +
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~---~~~~~~-~-----------~------------------------------------- 191 (382)
T TIGR00902 165 TAGLAFMLI-GFLIKPTIPP---KDAIPE-D-----------E------------------------------------- 191 (382)
T ss_pred HHHHHHHHH-HHHcCCCCCC---Cccccc-c-----------c-------------------------------------
Confidence 655333332 2233332100 000000 0 0
Q ss_pred cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccc
Q 013655 269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQ 348 (439)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (439)
. . ...+.+++++++..+...+..++. ...+.....+.+.+..+
T Consensus 192 --------~---~-------------~~~~~~~~l~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~l~~---------- 234 (382)
T TIGR00902 192 --------S---Q-------------GDSAFIALLKNPMNLRFLAAVCLI---QGAHAAYYGFSAIYWQA---------- 234 (382)
T ss_pred --------c---c-------------cchhHHHHHcChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------
Confidence 0 0 000344556555444443333322 22233333345555533
Q ss_pred cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeee
Q 013655 349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVV 428 (439)
Q Consensus 349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 428 (439)
.|.+....+.......++.+++.++.+++.||+|+|+.+..+.+..++..+.+.+.++.+......++-++..+...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677677788888889999999999999999999999999999999998888877777777777888888888888877
Q ss_pred eeeccccccC
Q 013655 429 YVYAPEVSHR 438 (439)
Q Consensus 429 ~~~~~e~~p~ 438 (439)
..++.+. |+
T Consensus 315 ~~~i~~~-~~ 323 (382)
T TIGR00902 315 MRYIAAQ-PG 323 (382)
T ss_pred HHHHHhC-CH
Confidence 7777766 54
No 73
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.92 E-value=5.2e-23 Score=197.60 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHH-HHHHHHHHHHHHHHhhc
Q 013655 38 WISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGF-LITAIVTSAAGLLSAFA 114 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~-~~~~~~~~~~~~~~~~~ 114 (439)
.++.........+.+| ++.+++|.|+++.|++.+...+ +..++.+++++ +||+||||.+ ..+.++.+++..+.+++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 4455555554455444 4678899999999999876655 55555555555 9999999875 45556666777777888
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCch--hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR--GFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP 191 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--g~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~ 191 (439)
++++.+++.+.+.|...+.. +....+..++.+++.| +...++.+.+.++|.+++|++++++.+.+|||..|+..++.
T Consensus 103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~ 182 (393)
T PRK15011 103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA 182 (393)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 88988766655444333344 5566777777666544 34557888999999999999999999999999999988877
Q ss_pred HHHHHHH-HhcccCC
Q 013655 192 SSLLLLL-YSVTPES 205 (439)
Q Consensus 192 ~~~~~~~-~~~~~~~ 205 (439)
.++..+. ++++||.
T Consensus 183 ~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 183 FIVCGVMVWLFLPSM 197 (393)
T ss_pred HHHHHHHHHhhcCcc
Confidence 6665444 4556665
No 74
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.7e-24 Score=194.74 Aligned_cols=358 Identities=22% Similarity=0.313 Sum_probs=248.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-------CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 013655 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW-H-------LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK 95 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~ 95 (439)
.+++...+.+..++++...++.+.++.+.|.+...+ | +++...+.+..+..+|.++|+++.|++.||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 456677788888999999999999999888776543 2 55677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-------hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Q 013655 96 GFLITAIVTSAAGLLSAFAP-------NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTIL 167 (439)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i 167 (439)
++...++++.++.+++++.. -.+.+.+.|++.|+|.|+- |...+..+|..-.++||...+.+....+.|...
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 99999999999988776642 1467889999999999999 767788899999999999998877777777776
Q ss_pred HHHHHHHhhc----c-----------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCC
Q 013655 168 EAGIAWLVMP----R-----------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTK 232 (439)
Q Consensus 168 ~~~l~~~l~~----~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (439)
|.+++-.+.. . .=||..+.+.+++.+..+...+..||++++..-..++.+.. ..+ ..++
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a--~~d----~~k~ 269 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQA--AGD----MKKV 269 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhh--hhc----cccc
Confidence 6666554421 1 12999999999998888888888899876542211111100 000 0000
Q ss_pred CCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHH
Q 013655 233 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL 312 (439)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (439)
.+. +.+++.+. +.+.+. ++... -.+...+..+..+..+
T Consensus 270 ~~~-----~~~~~~~~---------------------~~~~~~--------------~~~~~--~~F~~~f~~~hg~~Ll 307 (538)
T KOG0252|consen 270 LSV-----DIEAESTA---------------------ESDVPP--------------PSNSF--GLFSRLFLRWHGKHLL 307 (538)
T ss_pred ccc-----ccchhhcc---------------------ccCCCC--------------ccccc--chHHHHHHHHHHHHHH
Confidence 000 00000000 000000 00000 0233334333567788
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCc---------hhhHHHHhhhhhhHHHHHHHHHHHhhh
Q 013655 313 LLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDIN---------YGDVFITSFAEFPGLLLAAAMVDRLGR 383 (439)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~i~~~~g~~~~g~l~dr~gr 383 (439)
..+..||...+.+|...++...+....+ ..+... -....+.....++|..+...++|++||
T Consensus 308 gt~~~WFllDiafy~~nL~~s~I~~~ig----------~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR 377 (538)
T KOG0252|consen 308 GTAGTWFLLDIAFYGQNLFQSVIFSAIG----------VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR 377 (538)
T ss_pred HHHHHHHhhhhhhhccccHHHHHHHhhc----------cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh
Confidence 8899999999999999999888875432 222222 223334445566788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-----cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 384 KLSMSSMFFCCCIFLVPLLFQQP-----KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 384 r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+++.+.+++++++..+.+....+ ....+...+...++..+.......+.+|.||++
T Consensus 378 k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 378 KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 99999999999999888875443 122223333444556677788999999999974
No 75
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.92 E-value=2.8e-22 Score=193.16 Aligned_cols=314 Identities=16% Similarity=0.064 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-----chhH-HHHHHHHHHHHHH
Q 013655 35 GMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-----GRRK-GFLITAIVTSAAG 108 (439)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~-~~~~~~~~~~~~~ 108 (439)
...++.++.........+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||| .+..+.++.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34567778888888888999999999999999999777766 58899999999999 8765 6788888888777
Q ss_pred HHHhhc---chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhH
Q 013655 109 LLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRW 183 (439)
Q Consensus 109 ~~~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~ 183 (439)
.+..+. .+++.+.+..++.+++.+.. ++..+++.|+.|+++|+++.++...+.++|..+++.+++++.+. .|||.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 777776 35777777777777777777 77789999999999999999999999999999999999999885 59999
Q ss_pred HHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655 184 LLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 263 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (439)
.|++.++..++..+..++.||+++.. ++.++..+ +
T Consensus 163 ~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~---~--------------------------------------- 197 (402)
T PRK11902 163 TYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE---A--------------------------------------- 197 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHH---H---------------------------------------
Confidence 99998887766655555566543210 00000000 0
Q ss_pred hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccc
Q 013655 264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCV 343 (439)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
....++++++++..+..+...+.+.......+. ...+.+.+
T Consensus 198 -------------------------------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~~l~~------ 238 (402)
T PRK11902 198 -------------------------------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS--LSTTFLIR------ 238 (402)
T ss_pred -------------------------------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH--HHHHHHHH------
Confidence 001455566655544444433332221111111 11122221
Q ss_pred ccccccCCCCCCchhhHHHHh-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hhc-cccchhhhHH----
Q 013655 344 SNELQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL---LFQ-QPKGLTTGLL---- 414 (439)
Q Consensus 344 ~~~~~~g~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~---- 414 (439)
+.|.+.+..+......+ ++.++|.++++++.||+|+|+.+..+..+..+..+.+ ... ++.+......
T Consensus 239 ----~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
T PRK11902 239 ----GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN 314 (402)
T ss_pred ----hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 13355555555554433 4678999999999999999988776666655543333 232 2323333222
Q ss_pred HHHHhhhhheeeeeeeeccccccC
Q 013655 415 FGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
+..+++.+...+....++.+.+|.
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~ 338 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSA 338 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcH
Confidence 344555666667777777777664
No 76
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.92 E-value=8.3e-23 Score=195.50 Aligned_cols=304 Identities=11% Similarity=0.003 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh----HHHHHHHHHHHHHHHHHhh
Q 013655 38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR----KGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~ 113 (439)
++..........+++|.+.+++|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 344445566777888888899999999999999999999999999999999999984 3332222221 2223344
Q ss_pred cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
.+++|.+++.|++.|++.+.. +...++..++ .++|+++.+....+.++|..+||++++++.+++|||..|++.++..
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~ 168 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV 168 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 578999999999999988777 6655666665 4568888999999999999999999999999999999998777655
Q ss_pred HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655 193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 272 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
++..+..++.||.++ +++.++.
T Consensus 169 ~~~~~~~~~~~~~~~----~~~~~~~------------------------------------------------------ 190 (382)
T PRK11128 169 ASMLLGQLLRPTIMP----QGESRQQ------------------------------------------------------ 190 (382)
T ss_pred HHHHHHHHccCCCCC----ccccccc------------------------------------------------------
Confidence 544443333333210 0000000
Q ss_pred hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCC
Q 013655 273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS 352 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 352 (439)
.++ ...+++++++++..+......+... ..+.....+.+.+..+ .|.+
T Consensus 191 ------~~~-------------~~~~~~~i~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~----------~g~s 238 (382)
T PRK11128 191 ------ESA-------------GWPAWKALLKEPTVWRFLLCVSLLQ---GSHAAYYGFSAIYWQA----------AGYS 238 (382)
T ss_pred ------ccc-------------ccchHHHHHcChhHHHHHHHHHHHH---HHhHhHHHHHHHHHHH----------CCCC
Confidence 000 0004556666554443333222221 1122222233334322 3366
Q ss_pred CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeec
Q 013655 353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA 432 (439)
Q Consensus 353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 432 (439)
....+.......++.+++.++.+++.||+|+|+.+..+....++..+.+...++.+...+..++.|++.+...+....+.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 318 (382)
T PRK11128 239 ASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYI 318 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65667777788888899999999999999999999988888888777776666666666677777877776666555555
Q ss_pred ccc
Q 013655 433 PEV 435 (439)
Q Consensus 433 ~e~ 435 (439)
.+.
T Consensus 319 ~~~ 321 (382)
T PRK11128 319 AAR 321 (382)
T ss_pred HHC
Confidence 444
No 77
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.5e-23 Score=203.75 Aligned_cols=372 Identities=16% Similarity=0.066 Sum_probs=255.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
-.-+.|.+.+...+..+.........+.+.+.+.++++.+.++++|+.++......+.+|+.+.+.||+|.|.+.+.|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 44567777777666666665556666778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHH-HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 103 VTSAAGLLSAFAPNYYLLLFFR-CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
+.+++.++.++++++|.+++.. ++.|+|.|.. .+....+. .+.+++|+.+.|+...+.++|.++-|++..++.+.+|
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 9999999999999999888766 8889999998 44444445 5567889999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHhcccC-CchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCC
Q 013655 181 WRWLLGLSAFPSSLLLLLYSVTPE-SPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNED 259 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
||..+++.+.+.+-.++....+++ .+.... + .++..+. .... .+......+ ...+..+
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~-~--~~~~~~~-------~~~~---------~~~~~~~~~--~~~~~~~ 257 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKP-N--EEKDLRN-------SAAS---------VESTPKPVE--LRISERD 257 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCc-h--hhhhhcc-------cccc---------ccccccccc--cccccCC
Confidence 999999988887766655444433 322111 1 0000000 0000 000000000 0000000
Q ss_pred CCchhhhcccCCchhHhhhccccccchhhccccchhHHHH---HHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655 260 DTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITAL---LILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 336 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (439)
....+. ..+++. +.++...+.+ ....+.... .++++. +.++...+...+..+.++....+++.+.
T Consensus 258 ~~~~~~--~~~~~~-~~~~~~~~~~------~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~~~~ 325 (509)
T KOG2504|consen 258 SGLKKL--SLSNLA-TLKRGPDKWR------NSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLPSYA 325 (509)
T ss_pred CCCCcc--cccchh-hhhhCCcccc------ccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000 0000000000 000000011 344544 3344444455566667777777777777
Q ss_pred cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhhccccchhhhHH
Q 013655 337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLL 414 (439)
Q Consensus 337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (439)
.. .+.+...++...++.++..++|+++.|++.|+.. ++.+..++.++.+++.+.+.+.++.+.+....
T Consensus 326 ~~----------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~ 395 (509)
T KOG2504|consen 326 KS----------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS 395 (509)
T ss_pred hh----------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 54 4488888899999999999999999999999977 56667788888888888888888888888889
Q ss_pred HHHHhhhhheeeeeeeeccccccC
Q 013655 415 FGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.++|++.+.........+.|+.+.
T Consensus 396 ~~fG~~~g~~~~l~~~i~~~~~g~ 419 (509)
T KOG2504|consen 396 ILFGFCVGSFSSLTPVILVDLVGL 419 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCh
Confidence 999999888777776666666553
No 78
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.91 E-value=3.2e-22 Score=196.78 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-----chhHH-HHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-----GRRKG-FLITAIVTS 105 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~-~~~~~~~~~ 105 (439)
.......+..+.........+|.+.++.|.|..++|.. +.....+ ++.+++|+++||+ ||||. +..+.++.+
T Consensus 15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 15 AILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 33445556777777788888999999999999999987 3333333 5889999999999 99886 667777777
Q ss_pred HHHHHHhhc---chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 013655 106 AAGLLSAFA---PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLG 180 (439)
Q Consensus 106 ~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g 180 (439)
++..++++. ++++.+.+.+++.|++.+.. ++..++..|++|+++|+++.++...+..+|.++++.+..++.+ ..|
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 777776664 46888888999999988877 7777999999999999999999999999999999999999988 579
Q ss_pred hhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 181 WRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
||..|++.++..++..+..++.||+
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~~~~e~ 197 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATLLAPEP 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999888777766655556664
No 79
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.4e-22 Score=195.04 Aligned_cols=299 Identities=21% Similarity=0.300 Sum_probs=218.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSF-VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS 105 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 105 (439)
...++..++..++........++. .+..+.++.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+.++
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~ 122 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG 122 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence 344444455555555555544432 2223458888999999999999999999999999999999998898888888888
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh------hcc
Q 013655 106 AAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV------MPR 178 (439)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l------~~~ 178 (439)
+..++.....|++.+++.|++.|+..+.. |....++..|+.+++||..+|++.+..++|+++|++++..+ ...
T Consensus 123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~ 202 (495)
T KOG2533|consen 123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL 202 (495)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence 88878777999999999999999999999 88889999999999999999999999999999999999886 345
Q ss_pred cchhHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHH-HHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655 179 LGWRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVL-EKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 256 (439)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (439)
.|||+.|++.++++++..+ +++++|+.|... +-..+++++.. ++.++.+.+..
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~--~fl~~~ek~~~~~~~~~~~~~~~----------------------- 257 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA--WFLTDEEKELVVERLRESPSGGI----------------------- 257 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEecCChhhc--cccchHHHHHHHHHHHhccCCCc-----------------------
Confidence 7899999999988887654 567789887522 11111111111 11110000000
Q ss_pred CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655 257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 336 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (439)
.++.++..+++.++. +.++...+.+++.....++...|.|.+.
T Consensus 258 ----------------------------------~~~~~~~~~~~a~~d---p~vw~~~l~~~~~~lv~~~~~~~lpl~l 300 (495)
T KOG2533|consen 258 ----------------------------------ENKFKWKGFKEALKD---PGVWPFSLCYFFLKLVNYGFSYWLPLYL 300 (495)
T ss_pred ----------------------------------ccccCHHHHHHHHhc---hhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 000112244444443 4556777777888888888889999888
Q ss_pred cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Q 013655 337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR----LGRKLSMSSMFFCCCI 396 (439)
Q Consensus 337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~~~~~~~~~~ 396 (439)
.+ + .+.+..++..+.+...++++++.+++|+++|| ..+|........+...
T Consensus 301 ~~-~--------~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 301 KS-N--------GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI 355 (495)
T ss_pred Hc-C--------CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 54 1 34677777888889999999999999999999 5566655544444433
No 80
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.91 E-value=3.3e-22 Score=187.19 Aligned_cols=179 Identities=13% Similarity=0.172 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQ-ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 103 (439)
.+++..+.++..+++.. .+...++..|++.+++|+|..+ .|.+.+++..+++++.+++|+++||+|.|+++.++.+.
T Consensus 24 ~W~~~~~~lC~fGF~~e--~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~ 101 (511)
T TIGR00806 24 SWRVLVLYLCFYGFMAQ--FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS 101 (511)
T ss_pred chhHHHHHHHHHHHHHH--hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 34444444444443333 4566778889999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 104 TSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
+++..++.+++++++.+.+.|++.|++.|...+...++..++|+++|+++.|+...+..+|.+++++++++ ...+|||.
T Consensus 102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~ 180 (511)
T TIGR00806 102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence 99999999999999999999999999999888667999999999999999999999999999999999999 55689987
Q ss_pred HHH---HhHHHHHHHHHHHhcccCCc
Q 013655 184 LLG---LSAFPSSLLLLLYSVTPESP 206 (439)
Q Consensus 184 ~~~---~~~~~~~~~~~~~~~~~~~~ 206 (439)
... +......+++++.+++|..+
T Consensus 181 y~~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 181 YSTLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 543 33344445566678888543
No 81
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.90 E-value=3.9e-22 Score=193.40 Aligned_cols=320 Identities=15% Similarity=0.028 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh--
Q 013655 36 MGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA-- 112 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-- 112 (439)
+.+++.........++.| ++.+++|+|+.+.|++.+++.++..++++++|+++||+|||++++++..+.+++.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 96 (420)
T PRK09528 17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 55666999999999999999999999999999999999999998876665554432211
Q ss_pred -hcch-----HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655 113 -FAPN-----YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185 (439)
Q Consensus 113 -~~~~-----~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~ 185 (439)
..+. .....+..++.|.+.... +....+. +.. .++++..+|......++|..++|++++++.+ .+|+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f 173 (420)
T PRK09528 97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF 173 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence 1111 111222333334333332 2222332 222 3456788899999999999999999999876 5899999
Q ss_pred HHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655 186 GLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE 265 (439)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
++.+++.++..+..++.+++++. +. +.++ + .. +++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~---~-~~--~~~--------------------------------- 208 (420)
T PRK09528 174 WLGSGSALILLVLLFFAKPDAPS-----TA-KVAN---A-LG--ANA--------------------------------- 208 (420)
T ss_pred HHHHHHHHHHHHHHhcccccccc-----hh-hhcc---c-hh--ccc---------------------------------
Confidence 88887777666555544332210 00 0000 0 00 000
Q ss_pred hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655 266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNKCVS 344 (439)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (439)
. +......+..++++..+...+ ....... +.....+.+.+..+..
T Consensus 209 ---------------~-----------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~----~~~~~~~~~~~~~~~~---- 254 (420)
T PRK09528 209 ---------------S-----------AVSLKDALALLKLPKFWFLVLYVIGVACF----YDVFDQQFPNFFASFF---- 254 (420)
T ss_pred ---------------c-----------cccHHHHHHHccCCCeEeehHHHHHHHHH----HHHHHHHHHHHHHHHH----
Confidence 0 000002333444332222222 1111111 1111111222221100
Q ss_pred cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhhe
Q 013655 345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 424 (439)
Q Consensus 345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 424 (439)
.+.+.+....+...++..+...++.++.|++.||+|+|+.+..+.++.++..+++.+.++.+......++.+++.+..
T Consensus 255 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~ 332 (420)
T PRK09528 255 --ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFL 332 (420)
T ss_pred --hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 001233333467777778888899999999999999999998888888887777776666665555566666666555
Q ss_pred eeeeeeeccccccCC
Q 013655 425 FTVVYVYAPEVSHRS 439 (439)
Q Consensus 425 ~~~~~~~~~e~~p~~ 439 (439)
.+....+++|.+|++
T Consensus 333 ~~~~~~~~~~~~~~~ 347 (420)
T PRK09528 333 LVGVFKYITLNFDVR 347 (420)
T ss_pred HHHHHHHHHHHcCcc
Confidence 555556666666653
No 82
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.90 E-value=6.8e-23 Score=206.10 Aligned_cols=302 Identities=13% Similarity=0.109 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS 111 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~ 111 (439)
+...+..+............++.+.++++++..+.|++.+.+.+++.++.++.|++.||+|||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 34445666667777788888999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcc---------------------------------------------------hHHHHHHHHHHHhhccCcc-hhhHH
Q 013655 112 AFAP---------------------------------------------------NYYLLLFFRCLVGLGLGGG-PVLAS 139 (439)
Q Consensus 112 ~~~~---------------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~ 139 (439)
++.+ .+..++++|+++|+|.+.. +...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7642 2456789999999999998 77889
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------chhHHHHHhHHHHHHHHH
Q 013655 140 WFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL----------------------GWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 140 ~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~----------------------g~~~~~~~~~~~~~~~~~ 197 (439)
++.|++|+++|++++|++..+..+|.++|+++++++.+.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887543 277788888877777666
Q ss_pred HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhh
Q 013655 198 LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAK 277 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (439)
.++++|++.+....+.+.+..+ + ...+.. +.++..+
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~----~-~~~~~~------------------------------------~~~~~~~--- 311 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHE----T-EKLEKS------------------------------------EDKSRKK--- 311 (633)
T ss_pred HHHhCccccCCcccccchhhhh----h-hccccc------------------------------------ccccchh---
Confidence 6666666532100000000000 0 000000 0000000
Q ss_pred hccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCch
Q 013655 278 EMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINY 357 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 357 (439)
.....++.+..++.+++++.. +...+..++....+++...|.|.+.++. .+.+...++
T Consensus 312 ----------~~~~~~~~~~~~~~Ll~n~~f---~~~~l~~~~~~~~~~~~~~~lP~yl~~~---------~g~s~~~ag 369 (633)
T TIGR00805 312 ----------NSDITKDFPKIIKRLLCNPIY---MLVILAQVIDSLAFNGYITFLPKYLENQ---------YGISSAEAN 369 (633)
T ss_pred ----------hhhhHHHHHHHHHHHHcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHH
Confidence 000001112255667766543 3344444445555666777788777542 346666666
Q ss_pred hhHHHHhh-hhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Q 013655 358 GDVFITSF-AEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLV 399 (439)
Q Consensus 358 ~~~~~~~i-~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~ 399 (439)
.......+ +.++|.+++|+++||++ .|+.+..+.++..+..+
T Consensus 370 ~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 370 FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 66665555 56899999999999987 45666666666655543
No 83
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.90 E-value=6.5e-22 Score=215.44 Aligned_cols=310 Identities=12% Similarity=0.012 Sum_probs=208.7
Q ss_pred HHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh---hcchHHHHH
Q 013655 47 LLSFVGPAVQSLWHLSP--NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA---FAPNYYLLL 121 (439)
Q Consensus 47 ~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 121 (439)
....+.+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. ..++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (1146)
T PRK08633 28 HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF 107 (1146)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 33444555666666654 4478999999999999999999999999999999988876655554433 457899999
Q ss_pred HHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--------c-chhHHHHHhHH-
Q 013655 122 FFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR--------L-GWRWLLGLSAF- 190 (439)
Q Consensus 122 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~--------~-g~~~~~~~~~~- 190 (439)
++|++.|++.+.. ++..+++.|++|+++|++++|+...+..+|.++|+++++++.+. + +|.+.+.+..+
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA 187 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence 9999999999988 77789999999999999999999999999999999999998875 2 23333333332
Q ss_pred HHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccC
Q 013655 191 PSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE 270 (439)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (439)
..++.+++.+.+|+.+.....+.+. +..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------------------------------------- 215 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAAPEVFDK-KKY--------------------------------------------------- 215 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCCcccccc-ccc---------------------------------------------------
Confidence 2333334445556654211000000 000
Q ss_pred CchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccC
Q 013655 271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSG 350 (439)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 350 (439)
+..+.....++.+++++..+..++....... ..+....+.+.+... ..|
T Consensus 216 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~g 264 (1146)
T PRK08633 216 -------------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWF---ISQLAQANFPAYAKE---------VLG 264 (1146)
T ss_pred -------------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---HHHHHHHhhHHHHHH---------HhC
Confidence 0000011145556655444433332222111 111222233333321 123
Q ss_pred CCCC-CchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeee
Q 013655 351 KSRD-INYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVY 429 (439)
Q Consensus 351 ~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 429 (439)
.+.. ..++..+...++.++|.++.+++.||+++++.+.++.++.+++.+.+.+..+.+..++..++.|++.+...+...
T Consensus 265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 344 (1146)
T PRK08633 265 LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLN 344 (1146)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5555 557788888899999999999999999998888888877777777776666666666777788888887777778
Q ss_pred eeccccccCC
Q 013655 430 VYAPEVSHRS 439 (439)
Q Consensus 430 ~~~~e~~p~~ 439 (439)
+++.+..|++
T Consensus 345 ~~~~~~~p~~ 354 (1146)
T PRK08633 345 ALIQFRAPEK 354 (1146)
T ss_pred HHHhhcCCcc
Confidence 8888887753
No 84
>PTZ00207 hypothetical protein; Provisional
Probab=99.90 E-value=9.9e-22 Score=192.58 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=135.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
..+|..+........+.+. .+.++.+.+.+.+++|+|..+.+++.++. ....+++++.|++.||+|+|+++.++.+++
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4455555544444444433 34566778899999999999999998874 445567888999999999999999999999
Q ss_pred HHHHHHHhhc------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 105 SAAGLLSAFA------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 105 ~~~~~~~~~~------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
+++.++++++ ++++.+++.|++.|+|.+.. +.....+.+++| ++||++.|+...+.++|+.+.+.+...+..
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887 68999999999999998877 666677788886 789999999999999999865444444333
Q ss_pred ccchhHHHHHhHHHHHHHHHH-HhcccC
Q 013655 178 RLGWRWLLGLSAFPSSLLLLL-YSVTPE 204 (439)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~-~~~~~~ 204 (439)
.+|+..|++.+++.++..++ ..++++
T Consensus 181 -~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 181 -DNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 36888888777776665444 444433
No 85
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.9e-21 Score=176.04 Aligned_cols=319 Identities=13% Similarity=0.144 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 013655 29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG 108 (439)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 108 (439)
..+..+...++..++.......+.|.+.+.++++..+++++..+++.++.+.+++.|++.+|+|+|+.+++|+.++++++
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33555566677778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh---hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc------
Q 013655 109 LLSA---FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR------ 178 (439)
Q Consensus 109 ~~~~---~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~------ 178 (439)
.++. ...++..++++.++.|.|.+.. ....+++....+++...+.+++.+.++++|..++|++++++..+
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9885 4567889999999999999999 78889999999998889999999999999999999999988762
Q ss_pred -------------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhh
Q 013655 179 -------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHE 245 (439)
Q Consensus 179 -------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (439)
-.|+.+|...+...++..+.....+.+. .+.++..
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~------~~~~~~~-------------------------- 220 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPD------LQVAAPS-------------------------- 220 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCc------CCccccc--------------------------
Confidence 1266677766665555544443322110 0000000
Q ss_pred hhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhh
Q 013655 246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSY 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+ .++ +.....++++++..+...+..+++......
T Consensus 221 ------------------------------~--~~~-------------~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva- 254 (422)
T COG0738 221 ------------------------------L--GAS-------------GSAGLSSLFQNKHLRLGVLAIFLYVGAEVA- 254 (422)
T ss_pred ------------------------------c--ccc-------------ccchHHHHHhChHHHHHHHHHHHHHhHHHH-
Confidence 0 000 000345566666666555555555544433
Q ss_pred hHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013655 326 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ 405 (439)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 405 (439)
...|.+.+..+. .|.+.+++....+.+.++.++||+++.++..|+...+.+....++..+.++...+.+
T Consensus 255 --~gsfl~~y~~~~---------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 255 --IGSFLVSYLEEL---------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG 323 (422)
T ss_pred --HHHHHHHHHHhc---------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555331 345666778888999999999999999999999998888888777777666666665
Q ss_pred ccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655 406 PKGLTTGLLFGARICITVTFTVVYVYAPEVSH 437 (439)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p 437 (439)
+ ...+..+++.|++++..+|..++...+..|
T Consensus 324 g-~v~~~~l~~ig~F~simfPTIfslal~~l~ 354 (422)
T COG0738 324 G-VVALYALFLIGLFNSIMFPTIFSLALKNLG 354 (422)
T ss_pred C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Confidence 5 445667788899999999998888777666
No 86
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.90 E-value=9.3e-22 Score=213.59 Aligned_cols=320 Identities=13% Similarity=0.003 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH---HHHHHHHHHH
Q 013655 35 GMGWISEAMEMMLLSFVGP-AVQSLWHLSP-NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI---TAIVTSAAGL 109 (439)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~---~~~~~~~~~~ 109 (439)
++..+...+.......+.. .+..+.+.+. ...++..+++.+.+++.++++|+++||+|||+++.. +.++.++..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333332 3333333332 457888889999999999999999999999997533 2222222222
Q ss_pred HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
.....++++.++++|+++|++.+.. ++..+++.+++++++|++++|+.+++.++|.++||++++++.+..+|+..|+..
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3334489999999999999999988 888899999999999999999999999999999999999999999999998555
Q ss_pred HHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcc
Q 013655 189 AFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMAR 268 (439)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (439)
++..++.+++.+++|+++.... ....+ ....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~---------------------------------------------- 211 (1140)
T PRK06814 181 MGIAVLGWLASLFIPKTGNAAP--DLKID-RNII---------------------------------------------- 211 (1140)
T ss_pred HHHHHHHHHHHhhCCCCCCCCC--CCeec-cchH----------------------------------------------
Confidence 5555555555666665432100 00000 0000
Q ss_pred cCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccc
Q 013655 269 DEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQ 348 (439)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (439)
++....++.+++++..+...+... ...+.+.....+.|.+..+.
T Consensus 212 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~--------- 255 (1140)
T PRK06814 212 ------------------------RSTITLLKYAKADKRIWLAILGIS---WFWLVGAVVLSQLPLLAKET--------- 255 (1140)
T ss_pred ------------------------HHHHHHHHHHhcCchHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH---------
Confidence 000114555555444433333222 22222233334455554321
Q ss_pred cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--------------------cccc
Q 013655 349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ--------------------QPKG 408 (439)
Q Consensus 349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 408 (439)
.|.+....+...+..+++.++|.++.|++.||.++++.+..+.++.+++.+.+.+. .+.+
T Consensus 256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1140)
T PRK06814 256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW 335 (1140)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence 23555566888889999999999999999988776665554444444433322221 3445
Q ss_pred hhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 409 LTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 409 ~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
...+..+++|++.+...+...+++.+.+|++
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 366 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPA 366 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc
Confidence 5556667778887777777888888888764
No 87
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.89 E-value=4.1e-21 Score=184.80 Aligned_cols=321 Identities=14% Similarity=0.077 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013655 33 YAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS 111 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~ 111 (439)
.+....++.........++.|. +.+++|.|+.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 85 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF 85 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555554 456789999999999999999999999999999999999999987766655443322
Q ss_pred ---hhcc-----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655 112 ---AFAP-----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 112 ---~~~~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
.+.+ .+...++.+++.|++.+.. +....+..+.. ++++..+|......++|..++|++++.+.+ .+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~ 162 (396)
T TIGR00882 86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ 162 (396)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence 1221 2334566788888888776 55556665543 334567788888889999999999998765 5999
Q ss_pred HHHHHhHHHHHHHHHHHhcc-cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCC
Q 013655 183 WLLGLSAFPSSLLLLLYSVT-PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT 261 (439)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (439)
..|++.+++.++..++.+.. +++++. ++.+ +.. +.+.
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~---~~~~---------------------------- 200 (396)
T TIGR00882 163 IVFWLGSGFALILMLLLMFAKPKAPSS-------ATVA----NAL---GANA---------------------------- 200 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhh----ccc---cccc----------------------------
Confidence 99998887777665544443 332110 0000 000 0000
Q ss_pred chhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCc
Q 013655 262 TPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNK 341 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
. +.+..+.+++++++..+...... ++....+.....+.+.+..+..
T Consensus 201 -----------------~-------------~~~~~~~~~~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~~y~~~~~- 246 (396)
T TIGR00882 201 -----------------S-------------AFSLKLALELFRQRKFWMFVLYV---VGVACVYDVFDQQFANFFTSFF- 246 (396)
T ss_pred -----------------C-------------CCCHHHHHHHHcCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc-
Confidence 0 00001345555544333222221 1122222222222333321110
Q ss_pred ccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhh
Q 013655 342 CVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI 421 (439)
Q Consensus 342 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 421 (439)
.+.+.+....+...+...+...++.+..+++.||+|||+.+.++..+.++...+....++.+......++.+++.
T Consensus 247 -----~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~ 321 (396)
T TIGR00882 247 -----ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEV 321 (396)
T ss_pred -----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 001123333466677777888889999999999999999998888888887766666656555555555555554
Q ss_pred hheeeeeeeecccccc
Q 013655 422 TVTFTVVYVYAPEVSH 437 (439)
Q Consensus 422 ~~~~~~~~~~~~e~~p 437 (439)
.........+..+..|
T Consensus 322 ~~~~~~~~~~~~~~~~ 337 (396)
T TIGR00882 322 PFLLVGCFKYITSQFD 337 (396)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4333333333333333
No 88
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.88 E-value=6.4e-21 Score=186.33 Aligned_cols=321 Identities=14% Similarity=0.111 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
+..++++.+...++..+.....+.+..+..-|+...+++..+..+...+.++++|.++||++||++++.+.++.++..+.
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~ 91 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL 91 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777777777889999999999999999999999999999999999999988877655444
Q ss_pred Hhh-----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655 111 SAF-----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 111 ~~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~ 184 (439)
.++ ..+.+.+++..++.|++.+.. |...+.+.+..|+++...+.++.+...++...+||.++|.+...+|-...
T Consensus 92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~ 171 (524)
T PF05977_consen 92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA 171 (524)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 332 247889999999999999998 78889999999999999999999999999999999999999998999999
Q ss_pred HHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 264 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
|.+.++..++..+.....+.++. + +..+.++..+.+
T Consensus 172 f~inalsfl~~i~~l~~~~~~~~----~-~~~~~e~~~~~l--------------------------------------- 207 (524)
T PF05977_consen 172 FLINALSFLISILALLRWKPPPP----P-SSLPRERFFSAL--------------------------------------- 207 (524)
T ss_pred HHHHHHHHHHHHHHHHHcccccc----c-cccchhhhhhhH---------------------------------------
Confidence 98888776665554444432211 0 000000000000
Q ss_pred hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655 265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVS 344 (439)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (439)
...++.+.+++..+..+.....+......++. ..|.+..+.
T Consensus 208 -------------------------------~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~a---LlPl~a~~~----- 248 (524)
T PF05977_consen 208 -------------------------------REGLRYVRSSPPLRSVLLRSFLFNLFASAVWA---LLPLFARDV----- 248 (524)
T ss_pred -------------------------------HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHH---hhhHHHHHH-----
Confidence 01455555555444444433333332222222 244443221
Q ss_pred cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhhe
Q 013655 345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVT 424 (439)
Q Consensus 345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 424 (439)
.+.+...-++..+..+++.++|.++.+++.+|+++++.+..+.++.+++++.+.+.++.+...+.+++.|++....
T Consensus 249 ----l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~ 324 (524)
T PF05977_consen 249 ----LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIA 324 (524)
T ss_pred ----hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 2234444488889999999999999999999999988888888888888888888888887778888888888777
Q ss_pred eeeeeeeccccccC
Q 013655 425 FTVVYVYAPEVSHR 438 (439)
Q Consensus 425 ~~~~~~~~~e~~p~ 438 (439)
.....+...+..|+
T Consensus 325 ~~~~~t~~Q~~~P~ 338 (524)
T PF05977_consen 325 NSSLNTLVQLSVPD 338 (524)
T ss_pred HHHHHHHHHHhCCH
Confidence 77666777776664
No 89
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.88 E-value=1.7e-20 Score=183.82 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLL-SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAG 108 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~ 108 (439)
++.++...+...+..+.. .....++.+++|++..+.+++.+.+.....+..+++|+++|| +||||+++.+.++++++.
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 333334444444444444 445566778899999999999999998888889999999999 999999999999999999
Q ss_pred HHHhhcchHH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655 109 LLSAFAPNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~ 184 (439)
+++.++++.. .++++|+++|+|.|.. +...+++.|.+|++ +|+++++++..+.++|..++|.+++++.+++|||..
T Consensus 96 ~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~ 175 (489)
T PRK10207 96 FMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVT 175 (489)
T ss_pred HHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 9988877644 3558899999999998 77889999999887 458899999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhccc
Q 013655 185 LGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (439)
|++.++..++.++.+...+
T Consensus 176 F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 176 YNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9987655444444444433
No 90
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.88 E-value=5.9e-20 Score=179.89 Aligned_cols=171 Identities=14% Similarity=0.062 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhh--cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPAV-QSL--WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAA 107 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~ 107 (439)
+.+....+...+..+...+.+|.+ .++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g 92 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 334445555555655555555555 455 89999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 108 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN---RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~---rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
.++.+++++++.+++.+++.|++.|.. +...+++++++|+++ |++++++...+.++|.++||.+++++.+.+||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~ 172 (475)
T TIGR00924 93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHV 172 (475)
T ss_pred HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 999999888888999999999999988 777789999998754 8889999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcc
Q 013655 184 LLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ 202 (439)
.|.+.++..++..+.+++.
T Consensus 173 ~f~~~~~~~~~~~l~~~~~ 191 (475)
T TIGR00924 173 GFNLAAVGMVIGLLTFFAG 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9998876665554444443
No 91
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.87 E-value=5.1e-20 Score=177.84 Aligned_cols=314 Identities=12% Similarity=0.024 Sum_probs=191.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHHHHHHHHhhcc
Q 013655 38 WISEAMEMMLL-SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTSAAGLLSAFAP 115 (439)
Q Consensus 38 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~ 115 (439)
+++.+..+..+ +++.+++.+++|+|..+.|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+..+.+
T Consensus 11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~ 90 (418)
T TIGR00889 11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444 555667778899999999999999999999999999999999965 7788888888888888888888
Q ss_pred hHHHHHHHHHHHhhccCcc-hhhHHHH----h----hhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655 116 NYYLLLFFRCLVGLGLGGG-PVLASWF----L----EFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~----~----~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~ 186 (439)
+++.+.+.|++.|++.+.. +...++. . |......|.+..| .+|.+++|.+++.+....+|. +|+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~ 163 (418)
T TIGR00889 91 TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLY 163 (418)
T ss_pred CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHH
Confidence 9999999999999977665 4433332 1 2222233445444 467888888888774333344 455
Q ss_pred HhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM 266 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
+.++..++..+..+.+||+|+.. ++++.. .++.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~---~~~~----------------------------------------- 196 (418)
T TIGR00889 164 ITAGSSALLGVFALTLPDIPVAK---STAKMS---IKVM----------------------------------------- 196 (418)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCc---cccccC---HHHH-----------------------------------------
Confidence 55555555555556667653210 000000 0000
Q ss_pred cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655 267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE 346 (439)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
.+. +.+.+++++....+.+..+.. .........+.+.+..+.+. ...
T Consensus 197 ---------------------------~~~-~~~~~~k~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~--~~~ 243 (418)
T TIGR00889 197 ---------------------------LGL-DAFILFKNKRMAIFFFFSMLL---GAPLQITNIFGNGFLHEFGR--NPE 243 (418)
T ss_pred ---------------------------hhh-hHHHHhcCCCeeeHHHHHHHH---HhHHHHHHHhHHHHHHHhcc--ccc
Confidence 000 122233333222222222221 11111122223333322110 000
Q ss_pred cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-c---chhhhHHHHHHhhhh
Q 013655 347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP-K---GLTTGLLFGARICIT 422 (439)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~g~~~~ 422 (439)
...+......+...++..+..+++.+..|+++||+|||+++..+.++.++....+....+ . +..++..++.+++.+
T Consensus 244 ~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~ 323 (418)
T TIGR00889 244 FADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFD 323 (418)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHH
Confidence 000112234478888888899999999999999999999999999988887665554322 1 233445666777777
Q ss_pred heeeeeeeeccccccC
Q 013655 423 VTFTVVYVYAPEVSHR 438 (439)
Q Consensus 423 ~~~~~~~~~~~e~~p~ 438 (439)
...+....+++|.+|+
T Consensus 324 ~~~~~~~~~i~~~~p~ 339 (418)
T TIGR00889 324 FFNISGSVFVEKEVPV 339 (418)
T ss_pred HHHHHHHHHHHHHCCH
Confidence 7677777788888885
No 92
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.87 E-value=1.6e-20 Score=183.24 Aligned_cols=300 Identities=15% Similarity=0.080 Sum_probs=198.8
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhH-HHHHHHHHHHHHHHHHhhcch------H
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRK-GFLITAIVTSAAGLLSAFAPN------Y 117 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~-~~~~~~~~~~~~~~~~~~~~~------~ 117 (439)
.+..+++.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++ .
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 445677788899999999999999999999999999999998 67755 566777788877777766553 4
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-------cccchhHHHHHh
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-------PRLGWRWLLGLS 188 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-------~~~g~~~~~~~~ 188 (439)
+.+++.+++.+++.+.. .+..++..|.. ++++|++..++.+.+..+|..+++.+.+.+. +..+|+..+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 45666777888887776 55567778877 4688999999999988888877766655544 246899999888
Q ss_pred HHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhc
Q 013655 189 AFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMA 267 (439)
Q Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
+++.++..+. .+..+|+++. ..++ ++
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~-----~~~~-------------~~----------------------------------- 206 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSE-----IPKN-------------IE----------------------------------- 206 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCC-----CCcc-------------cc-----------------------------------
Confidence 8777766544 3444543210 0000 00
Q ss_pred ccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccc
Q 013655 268 RDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNEL 347 (439)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (439)
+ + .+....++.+++++..+......+. ....++....+.+.+....
T Consensus 207 -~-------------------~---~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------- 252 (437)
T TIGR00792 207 -K-------------------K---LSLKQIFKALFKNDQLLILCLAYLF---YNLAFNIKNGVQVYYFTYV-------- 252 (437)
T ss_pred -c-------------------C---CCHHHHHHHHhCCHHHHHHHHHHHH---HHHHHHHHcchhheeEeee--------
Confidence 0 0 0001145566665544333332222 2222222222233332111
Q ss_pred ccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-ccchhhhHHHHHHhhhhheee
Q 013655 348 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFT 426 (439)
Q Consensus 348 ~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 426 (439)
. .+....+....+..++.+++.++.++++||+|+|+++..+..+.+++.+.+.+.+ +.+...+..++.+++.+...+
T Consensus 253 -~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (437)
T TIGR00792 253 -L-GDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG 330 (437)
T ss_pred -c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222335566667888999999999999999999999988888877776665543 334445556677777777778
Q ss_pred eeeeecccccc
Q 013655 427 VVYVYAPEVSH 437 (439)
Q Consensus 427 ~~~~~~~e~~p 437 (439)
..+++.+|..|
T Consensus 331 ~~~~~~~~~~~ 341 (437)
T TIGR00792 331 LVWALVADTVD 341 (437)
T ss_pred HHHHHHhhhhh
Confidence 78888777754
No 93
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6e-20 Score=163.85 Aligned_cols=297 Identities=17% Similarity=0.149 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 013655 42 AMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLL 121 (439)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (439)
-......+++++.+.+++|+|.+.+|+++++..+...+.+++..++..|+|.++.+..++++.+++.++-... +.+.++
T Consensus 25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~ 103 (395)
T COG2807 25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLF 103 (395)
T ss_pred chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 3445667888999999999999999999999999999999999999999999999999999999999888776 778888
Q ss_pred HHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHH
Q 013655 122 FFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLLLLY 199 (439)
Q Consensus 122 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~ 199 (439)
.+..+.|.+.+.. ...++++-+.+| ++-+..+|++....++|+.+++.+...+.++. |||..+.+.+++++++++.+
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W 182 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW 182 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 556677777776 56799999999999999999999998888877 79999999999988887776
Q ss_pred hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655 200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM 279 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (439)
+.-..++ + ..... .
T Consensus 183 lPq~~r~-----~-~~~~~------------~------------------------------------------------ 196 (395)
T COG2807 183 LPQALRE-----Q-AASIA------------T------------------------------------------------ 196 (395)
T ss_pred hhhcccc-----c-ccccc------------c------------------------------------------------
Confidence 5321110 0 00000 0
Q ss_pred cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhh
Q 013655 280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGD 359 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 359 (439)
+.. +-..++++ +..|.+.+.+..+...+|....|.|.+..+. |.+.+.++..
T Consensus 197 ~~~---------------~~~~vw~~---~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~----------G~sa~~aG~l 248 (395)
T COG2807 197 KLV---------------SVRKVWRS---PLAWQVTLFMGLQSLLYYIVIGWLPAILIDR----------GLSAAEAGSL 248 (395)
T ss_pred ccc---------------cccccccC---chhHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------CCCHHHhhhH
Confidence 000 11123333 3345666667788999999999999999774 4999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655 360 VFITSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV 435 (439)
Q Consensus 360 ~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~ 435 (439)
.++..+.+++..++...+.+|. .+|+.......++.++.+.+.+.+....... .+++|++.++.+|...+++...
T Consensus 249 lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~r 324 (395)
T COG2807 249 LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLR 324 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhh
Confidence 9999999999999999999975 5778888888888888888876655433333 5888888888888776655443
No 94
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.85 E-value=3.4e-20 Score=165.76 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=113.1
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchh
Q 013655 57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPV 136 (439)
Q Consensus 57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 136 (439)
+..+.+..-.|++.+.+.+...+.++.+|.++||+|||.++.+|.+..++..++.+.+.|+..+++.|++.|+.-|...+
T Consensus 61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v 140 (451)
T KOG2615|consen 61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV 140 (451)
T ss_pred CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH
Confidence 33445667789999999999999999999999999999999999999999999999999997777779999999999988
Q ss_pred hHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 137 LASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 137 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
.-++++|..++++|+.+++.++...++|.++||.+++++.+
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999999999999999999987
No 95
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.5e-21 Score=172.36 Aligned_cols=148 Identities=20% Similarity=0.142 Sum_probs=137.2
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-h
Q 013655 57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 135 (439)
Q Consensus 57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~ 135 (439)
.+.+-+.+++|++.+...+...+.+++.|.+.||+|+|..+++|.+++..+.+++++.+++++++++|.++|+|.+.. .
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 345667889999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred hhHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccC
Q 013655 136 VLASWFLEFIPAPN-RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPE 204 (439)
Q Consensus 136 ~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 204 (439)
+..+++++.+|+++ |++++|+...+.++|..+||+++|.+.+..|.+.+|++.++++++...+.+++-+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 77799999998865 7999999999999999999999999999999999999999999988777655533
No 96
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.84 E-value=1.9e-18 Score=168.58 Aligned_cols=165 Identities=24% Similarity=0.278 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
+++......+........++++..++|-+ ....|+.+...++..++.++.|+++|.+|||.+++.+.++..++.+..+.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 33333444445555566778888999865 66678889999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655 114 APNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS 193 (439)
Q Consensus 114 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~ 193 (439)
++|...++.+..+.|+|.|........++|..|.|.|+...++.....-+....++.++..+..+.+||+.|++.++...
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG 207 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence 99999999999999999887766666689999999999888777766666666788888777777799999998888776
Q ss_pred HHHHHH
Q 013655 194 LLLLLY 199 (439)
Q Consensus 194 ~~~~~~ 199 (439)
+.+++.
T Consensus 208 i~~vl~ 213 (599)
T PF06609_consen 208 IALVLI 213 (599)
T ss_pred HHHHHH
Confidence 665543
No 97
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.84 E-value=1.7e-18 Score=166.28 Aligned_cols=272 Identities=13% Similarity=-0.050 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHH--HHHHHHHHHHHHHHHHH-hhhhcchhHHHHHHHHH-HHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLI--TSVVFAGMLVGAYSWGI-VSDNFGRRKGFLITAIV-TSA 106 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~G~r~~~~~~~~~-~~~ 106 (439)
+..+...++.++.......+.+|.+.++.|.|.+++|++ .++..+...+.+|+.+. ..||+||||.+++...+ .+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 445566778899999999999999999999999999997 46678888888888844 79999999887555533 222
Q ss_pred HHHHHh---hcch-HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 107 AGLLSA---FAPN-YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 107 ~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
+..... ...+ ...++...++.++..+.. +....+..|..++++++...+....+..+|..+++.+.+++.+.+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 222222 1222 223333444444555555 56667788888888888888889898899999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCC
Q 013655 182 RWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDT 261 (439)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (439)
|..|++.++..++..+..++++++++. +.+.++ +
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~--~----------------------------------------- 196 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL--A----------------------------------------- 196 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch--h-----------------------------------------
Confidence 999999988877665555554433110 000000 0
Q ss_pred chhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCc
Q 013655 262 TPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNK 341 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
...+++++++++..+......+.+.......+ .+.+.+..+
T Consensus 197 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l~~--- 237 (390)
T TIGR02718 197 ---------------------------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGF---GLSKLYLVD--- 237 (390)
T ss_pred ---------------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH---HHhhHHHHh---
Confidence 00034445554443433333333332222222 233444433
Q ss_pred ccccccccCCCCCCchhhHHHHh-hhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013655 342 CVSNELQSGKSRDINYGDVFITS-FAEFPGLLLAAAMVDRLGRKLSMSSMFFCC 394 (439)
Q Consensus 342 ~~~~~~~~g~~~~~~~~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 394 (439)
.|.+.+..+......+ +..+++.++.|++.||+|+|+.+..+..+.
T Consensus 238 -------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 238 -------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred -------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3477777777666665 466778999999999999999888776655
No 98
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.83 E-value=1.4e-18 Score=171.20 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHHhh
Q 013655 36 MGWISEAMEMMLLSF-VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
...+...+..+.... ...++.+++|++..+.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 4445568899999999998888776666667899999999 59999999999999999888888
Q ss_pred cc-hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhH
Q 013655 114 AP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSA 189 (439)
Q Consensus 114 ~~-~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~ 189 (439)
++ +.+.+.+.+++.|++.|.. +...+++.+++|+++ |+.++++++.+.++|..++|.+++++.+.+|||..|++.+
T Consensus 108 ~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 108 SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 64 5666778899999999987 777788999998653 4567889999999999999999999999999999999877
Q ss_pred HHHHHHHH
Q 013655 190 FPSSLLLL 197 (439)
Q Consensus 190 ~~~~~~~~ 197 (439)
+..++..+
T Consensus 188 i~~~i~~i 195 (500)
T PRK09584 188 VGMLITVV 195 (500)
T ss_pred HHHHHHHH
Confidence 65555443
No 99
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.81 E-value=6.7e-18 Score=162.49 Aligned_cols=329 Identities=13% Similarity=0.066 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh----hcchhHHHHHH-HHHHHHHHHHHhh
Q 013655 39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD----NFGRRKGFLIT-AIVTSAAGLLSAF 113 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~~~~~-~~~~~~~~~~~~~ 113 (439)
+...+.+.....+.+.+.+++|.++...+++..+..+...+.+|+.|+++| |+||||.++++ ....+++.+++++
T Consensus 14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 14 AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 333445555566666678899999999999999999999999999999999 59999998764 6666677777777
Q ss_pred cchHH-----------------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCch--hhHHHHHHHHHHHHHHHHHHHHH
Q 013655 114 APNYY-----------------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNR--GFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 114 ~~~~~-----------------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--g~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
+++++ .++++..+..++.... .+..+++.|..|+++| +.+.++.+.+.++|.++++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66542 2233333445566666 6667899999998865 68999999999999999999988
Q ss_pred Hh--hccc-------------chhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCC
Q 013655 174 LV--MPRL-------------GWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGN 237 (439)
Q Consensus 174 ~l--~~~~-------------g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (439)
+. .+.+ +.+..|++.++..+++.++ .+..+|.|.... ++.++ + +.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~~~~~--~---~~------------ 234 (477)
T TIGR01301 174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS--DDFIN--S---EA------------ 234 (477)
T ss_pred HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--ccchh--h---hc------------
Confidence 64 2211 5678888888777776554 556677642110 00000 0 00
Q ss_pred CccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhC--hHHHHHHHHHH
Q 013655 238 LVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS--PELIKSTLLLW 315 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 315 (439)
++ .++ .+ +. +..+ .-++.+.+ +..++..++-+
T Consensus 235 ---------~~--------------------~~~-~~-~~------------~~~~---~i~~~~~~mP~~m~~l~~vqf 268 (477)
T TIGR01301 235 ---------AP--------------------PSK-HG-EE------------AFFG---ELFGAFKYLPRPVWILLLVTC 268 (477)
T ss_pred ---------cc--------------------ccc-cc-hh------------hhHH---HHHHHHHHCCHHHHHHHHHHH
Confidence 00 000 00 00 0000 02233332 23334444444
Q ss_pred HHHHH-HHHhhhHHHHHHHHhhcCCCcccccccccCCCCC--CchhhHHHHhhhhhhHHHHHHHHHHHhhh-HHHHHHHH
Q 013655 316 LVFFG-NAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRD--INYGDVFITSFAEFPGLLLAAAMVDRLGR-KLSMSSMF 391 (439)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~ 391 (439)
+.|+. ..+.+|........+.... +.. ...++.. ...+....+++...+.+++..++.+|+|+ |.....+.
T Consensus 269 fsW~a~f~~~~y~T~~vg~~v~~~~----~~~-~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~ 343 (477)
T TIGR01301 269 LNWIAWFPFILFDTDWMGREVYGGS----VNQ-GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVN 343 (477)
T ss_pred HHHHHHHHHHHhccHHHHHHHcCCC----Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 44442 2222222222222222110 000 0000000 02344555566666777788889999984 67778887
Q ss_pred HHHHHHHHHHhhccc---------------------cchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655 392 FCCCIFLVPLLFQQP---------------------KGLTTGLLFGARICITVTFTVVYVYAPEVSH 437 (439)
Q Consensus 392 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p 437 (439)
++.+++++...+.++ .+..++...+.|+.+...+...++++++..|
T Consensus 344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 777777766654321 1455666778889999999999999988877
No 100
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.80 E-value=6.7e-17 Score=156.23 Aligned_cols=165 Identities=14% Similarity=0.112 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHh
Q 013655 35 GMGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSA 112 (439)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~ 112 (439)
+...+...+..+....++| ++.+++|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++..
T Consensus 15 ~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~ 94 (493)
T PRK15462 15 VALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG 94 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444544555 44567899999999999999999999999999999999 999999999999998887666
Q ss_pred hcc-hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 113 FAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 113 ~~~-~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
..+ +...+.+...+.++|.|.. +...+++.|.+|++ +|..++++...+.++|+.++|.+.+++.+.+||+..|.+.
T Consensus 95 ~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ia 174 (493)
T PRK15462 95 ASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLA 174 (493)
T ss_pred HhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHH
Confidence 533 2233444444555666766 66678899999876 7999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 013655 189 AFPSSLLLLLY 199 (439)
Q Consensus 189 ~~~~~~~~~~~ 199 (439)
++..++.++.+
T Consensus 175 aigm~l~li~~ 185 (493)
T PRK15462 175 AVGMIAGLVIF 185 (493)
T ss_pred HHHHHHHHHHH
Confidence 76555554443
No 101
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.80 E-value=2.5e-18 Score=167.10 Aligned_cols=298 Identities=19% Similarity=0.195 Sum_probs=208.4
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh----hcchhHH-HHHHHHHHHHHHHHHhhc-c-------
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD----NFGRRKG-FLITAIVTSAAGLLSAFA-P------- 115 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~-~~~~~~~~~~~~~~~~~~-~------- 115 (439)
.++.+++.+.+|+++...|++..+..+..++..|+.|.++| |+||||. ++.+..+.+++..++... |
T Consensus 22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 45567788889999999999999999999999999999999 7997766 456778888887777655 4
Q ss_pred hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-------chhHHHH
Q 013655 116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-------GWRWLLG 186 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-------g~~~~~~ 186 (439)
....+.+..++..++.... .+..++..|..+ +++|.+..+....+..+|.++...+.+.+.+.. +|+....
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~ 181 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL 181 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence 1233456666668887777 556688899997 468999999999999998876666666554322 5888777
Q ss_pred HhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655 187 LSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE 265 (439)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
+.+++.++..++ .+..+|+++ +.++.+
T Consensus 182 v~~iv~~v~~~i~~~~~ke~~~------~~~~~~---------------------------------------------- 209 (428)
T PF13347_consen 182 VLAIVGLVFFLITFFFVKERSV------EVTEQE---------------------------------------------- 209 (428)
T ss_pred HHHHHHHHHhhhhhheeeeccc------cccccc----------------------------------------------
Confidence 777776665554 344444100 000000
Q ss_pred hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHhhcCCCcccc
Q 013655 266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLV-FFGNAFSYYGLVLLTTELNNGQNKCVS 344 (439)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (439)
+..+-...++.+++++.++......++ ++..........++.....
T Consensus 210 -------------------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl-------- 256 (428)
T PF13347_consen 210 -------------------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL-------- 256 (428)
T ss_pred -------------------------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------
Confidence 000000145666665544444443333 2333322222223333322
Q ss_pred cccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhh
Q 013655 345 NELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICIT 422 (439)
Q Consensus 345 ~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~ 422 (439)
.+.+.......+..+..+++.++.++++||+|+|+++..+.++.+++.+.+.+.. +.+...+..++.|++.+
T Consensus 257 ------~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~ 330 (428)
T PF13347_consen 257 ------GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYG 330 (428)
T ss_pred ------cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhc
Confidence 2223446666778888999999999999999999999999999999888877665 77778888899999999
Q ss_pred heeeeeeeecccccc
Q 013655 423 VTFTVVYVYAPEVSH 437 (439)
Q Consensus 423 ~~~~~~~~~~~e~~p 437 (439)
..+...+++.+|+.+
T Consensus 331 ~~~~~~~a~~ad~id 345 (428)
T PF13347_consen 331 AFFVIPWAMLADVID 345 (428)
T ss_pred ccccccccccccchh
Confidence 999999999999876
No 102
>PRK09669 putative symporter YagG; Provisional
Probab=99.79 E-value=1.5e-17 Score=162.46 Aligned_cols=298 Identities=15% Similarity=0.092 Sum_probs=184.3
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHH-HHHHHHHHHHHHHHHhhcch------
Q 013655 48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKG-FLITAIVTSAAGLLSAFAPN------ 116 (439)
Q Consensus 48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~------ 116 (439)
..++.+++.+++|+|+..+|.+..+..+..++..|+.|+++|| +||||. ++.+....+++..+....++
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 3455667888999999999999999999999999999999998 777554 55676777666655444432
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGL 187 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~g~~~~~~~ 187 (439)
.+.+++..++.+.+.... .+..++.+|+. ++++|++..++...+..+|..+++.+...+.. ..+|+..+.+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 344555556666665555 55568888888 45779998888888888887777665443332 3467877777
Q ss_pred hHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655 188 SAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM 266 (439)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
.+++.++..+.. +..+|++.. +. + +
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~-----~~-~-------------~----------------------------------- 214 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTP-----EV-D-------------N----------------------------------- 214 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCC-----CC-c-------------C-----------------------------------
Confidence 776665554433 333332100 00 0 0
Q ss_pred cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655 267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE 346 (439)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
..+.+..++.+++++.++......+............ ...+....
T Consensus 215 -------------------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~---~~y~~~~~------- 259 (444)
T PRK09669 215 -------------------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGA---TLYYVNYV------- 259 (444)
T ss_pred -------------------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhh---hheeeeee-------
Confidence 0000114566666555444443333222111111111 11111110
Q ss_pred cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--cccchhhhHHHHHHhhhhhe
Q 013655 347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ--QPKGLTTGLLFGARICITVT 424 (439)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~ 424 (439)
. ...+..........+..+++.++.+++.||+|+|+.+..+.++.++..+.+.+. ++.+...+..++.+++.+..
T Consensus 260 --~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 336 (444)
T PRK09669 260 --L-LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLT 336 (444)
T ss_pred --c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 0 112222344455567778899999999999999999887776655443333222 33444556667788888888
Q ss_pred eeeeeeecccccc
Q 013655 425 FTVVYVYAPEVSH 437 (439)
Q Consensus 425 ~~~~~~~~~e~~p 437 (439)
.+..+++++|..+
T Consensus 337 ~~~~~am~ad~~d 349 (444)
T PRK09669 337 TPLQWSMFSDVVD 349 (444)
T ss_pred HHHHHHHHHhhhh
Confidence 8888888888765
No 103
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.76 E-value=5.4e-17 Score=158.65 Aligned_cols=337 Identities=11% Similarity=0.015 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----hhHHHHHHHH
Q 013655 28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-----RRKGFLITAI 102 (439)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~~~~~ 102 (439)
...+.++...++..+..........+.+.+++|+|.++++...++..+...+- +++|.++||++ ||+.++++.+
T Consensus 25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGL 103 (468)
T ss_pred chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHH
Confidence 33445555567788887445555666777789999999999999999999885 55999999997 6777777776
Q ss_pred HH-HHHHHHHhhcchHH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHHHHHhh
Q 013655 103 VT-SAAGLLSAFAPNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWM---VIFQTFWTVGTILEAGIAWLVM 176 (439)
Q Consensus 103 ~~-~~~~~~~~~~~~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~---~~~~~~~~~g~~i~~~l~~~l~ 176 (439)
+. +++....+..++.. ...+.+++.+++.+.. .+..+++.|..+ +++.... +......++|..+++.+++.+.
T Consensus 104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 66 34444444445543 3444778889998888 777799999988 5554433 3333445589999999999999
Q ss_pred cccchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655 177 PRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 256 (439)
Q Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (439)
+.++|+..|++.+++.++..+..++++|++.....+.+.++. .......
T Consensus 183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~-~~~~~~~------------------------------ 231 (468)
T TIGR00788 183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE-MNMALLT------------------------------ 231 (468)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch-hhhhhhh------------------------------
Confidence 999999999998888777766667777753100000000000 0000000
Q ss_pred CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655 257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKS-TLLLWLVFFGNAFSYYGLVLLTTEL 335 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (439)
....+ ..++........++++..+. ....++.+...... .... +
T Consensus 232 --------------~~~~~---------------~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~--~~~~----f 276 (468)
T TIGR00788 232 --------------LGVLA---------------NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA--SGSV----F 276 (468)
T ss_pred --------------hhHHH---------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC--Ccee----E
Confidence 00000 00000112223343333332 22222211110000 0000 0
Q ss_pred hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc----------c
Q 013655 336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ----------Q 405 (439)
Q Consensus 336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----------~ 405 (439)
. ......|.++...+......+++.++|..+.+++.+|++.|+++.++.++.+++.+..... +
T Consensus 277 ~-------~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~ 349 (468)
T TIGR00788 277 C-------ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS 349 (468)
T ss_pred E-------EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC
Confidence 0 0001356888888899989999999999999999999999999999998888876543211 2
Q ss_pred ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 406 PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.+......++.+++.+..+.....++.+..|++
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~ 383 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG 383 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC
Confidence 2233334455666666666666778888887764
No 104
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.75 E-value=1.1e-16 Score=157.48 Aligned_cols=302 Identities=11% Similarity=0.005 Sum_probs=180.6
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh----hcch-hHHHHHHHHHHHHHHHHHhhcch------H
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD----NFGR-RKGFLITAIVTSAAGLLSAFAPN------Y 117 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~~~~~~~~~~------~ 117 (439)
.++..++.+.+|+++..+|.+..+.-+..++..|+.|+++| |+|| |+.++.+....+++..++...++ +
T Consensus 27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~ 106 (473)
T PRK10429 27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY 106 (473)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence 34556677888999999999999999999999999999999 5698 45566677777777655544331 2
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHHHh
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLGLS 188 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~g~~~~~~~~ 188 (439)
..+++..++.+++.... .+..++..|.. ++++|.+..++...+.++|+.+.+.+...+.+ ..+|+....+.
T Consensus 107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~ 186 (473)
T PRK10429 107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL 186 (473)
T ss_pred HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 34445556667777666 55668889988 57889999999777777776666555443322 12456555555
Q ss_pred HHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhc
Q 013655 189 AFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMA 267 (439)
Q Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
+++.++..+. .+..+|.+.....+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~---------------------------------------------------- 214 (473)
T PRK10429 187 IAFFIVSTIITLRNVHEVYSSDNQVSAE---------------------------------------------------- 214 (473)
T ss_pred HHHHHHHHHHHHcCceecCCcccccccc----------------------------------------------------
Confidence 5555444333 33344431100000000
Q ss_pred ccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccc
Q 013655 268 RDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNEL 347 (439)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (439)
+ +..+-...++.+++++.++......+... ...+....+.+.+....
T Consensus 215 ~----------------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~---~~~~~~~~~~~y~~~y~-------- 261 (473)
T PRK10429 215 G----------------------SHLTLKDIVALIYKNDQLSCLLGMALAYN---IASNIINGFAIYYFTYV-------- 261 (473)
T ss_pred c----------------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHH---HHHHHHhhheeeEEEEE--------
Confidence 0 00000114555555544433333322222 22222222222222111
Q ss_pred ccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----ccccchhhhHHHHHHhhhh
Q 013655 348 QSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF-----QQPKGLTTGLLFGARICIT 422 (439)
Q Consensus 348 ~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~ 422 (439)
..+....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.. ..+.+..++..++.+++.+
T Consensus 262 --~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~ 339 (473)
T PRK10429 262 --IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTA 339 (473)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 112222345555666888999999999999999999988777765554444322 2223444455566777778
Q ss_pred heeeeeeeecccccc
Q 013655 423 VTFTVVYVYAPEVSH 437 (439)
Q Consensus 423 ~~~~~~~~~~~e~~p 437 (439)
...+..+++.+|..+
T Consensus 340 ~~~~~~~am~ad~id 354 (473)
T PRK10429 340 LFWVLQVIMVADTVD 354 (473)
T ss_pred HHHHHHHHHHhhhhh
Confidence 777877888888754
No 105
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.75 E-value=7.8e-16 Score=146.41 Aligned_cols=313 Identities=17% Similarity=0.139 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHHHHhhcc
Q 013655 37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-RRKGFLITAIVTSAAGLLSAFAP 115 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~ 115 (439)
.++..++......++.+.+.++.|+|..++|.+.++..+..+++++++|.++||.+ +||.+.+..++.++..+.....+
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~ 89 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666777788888999999999999999999999999999999999986 57777777777777777777788
Q ss_pred hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHH-HHHhhcccch---hHHHHHhHH
Q 013655 116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI-AWLVMPRLGW---RWLLGLSAF 190 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l-~~~l~~~~g~---~~~~~~~~~ 190 (439)
+++.+++..++..+..... +...++..+... +++.-.|-.-..+++|..++... .+.+....++ ...+++.++
T Consensus 90 ~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 167 (400)
T PF03825_consen 90 SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAI 167 (400)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 8888888888877776665 666666666654 33445566666677777666443 2333332222 234555555
Q ss_pred HHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccC
Q 013655 191 PSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE 270 (439)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (439)
..++.....+.+|+.|+....+.+.++
T Consensus 168 ~~~ll~~~~l~lp~~~~~~~~~~~~~~----------------------------------------------------- 194 (400)
T PF03825_consen 168 LSLLLAGFALFLPKTPPKRSAKESVKK----------------------------------------------------- 194 (400)
T ss_pred HHHHHHHHHHhCCCCccccccCCCccc-----------------------------------------------------
Confidence 554444445566766421000000000
Q ss_pred CchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccC
Q 013655 271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSG 350 (439)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 350 (439)
....+...+++++....+++..+........+ ..+.+.+..+. .|
T Consensus 195 -----------------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~---~~f~~~yl~~~---------gg 239 (400)
T PF03825_consen 195 -----------------------LLGLDALKLLKNPRFLVFLLAAFLIGISHAAY---YTFFSIYLQEL---------GG 239 (400)
T ss_pred -----------------------ccchHHHHHhcCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHc---------cc
Confidence 00002234555544444444333333222222 22233333221 11
Q ss_pred CCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-cccchhhhHH----HHHHhhhhhee
Q 013655 351 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQ-QPKGLTTGLL----FGARICITVTF 425 (439)
Q Consensus 351 ~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~g~~~~~~~ 425 (439)
.+....+...++..+.+++.-...+++..|+|.++++.++.+..++=..++... ++.+...... .+-|+.++..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 334445667778888999999999999999999999999999999988887766 4444333333 34788888888
Q ss_pred eeeeeeccccccCC
Q 013655 426 TVVYVYAPEVSHRS 439 (439)
Q Consensus 426 ~~~~~~~~e~~p~~ 439 (439)
.....++.+..|++
T Consensus 320 ~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 320 AASVRYIDRIAPPE 333 (400)
T ss_pred HHHHHHHHHhCCcc
Confidence 88888999988875
No 106
>PRK11462 putative transporter; Provisional
Probab=99.74 E-value=1.3e-15 Score=148.84 Aligned_cols=150 Identities=12% Similarity=0.054 Sum_probs=110.5
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHH-HHHHHHHHHHHHHHHhhcch------H
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKG-FLITAIVTSAAGLLSAFAPN------Y 117 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~------~ 117 (439)
.++..++.+..|+++..+|.+..+.-+.-++..|+.|.++|| +||||. ++++.+..+++..++...|+ .
T Consensus 30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 445566778899999999999999999999999999999996 687665 45666777777666554442 3
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-------cchhHHHHHh
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-------LGWRWLLGLS 188 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-------~g~~~~~~~~ 188 (439)
..+.+..++..++.... .+..++..|..+ +++|++..++...+..+|..+++.+...+.+. .+|+....+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 34455556667777776 556688888886 67899999999999999888887776554433 2467666666
Q ss_pred HHHHHHHHHH
Q 013655 189 AFPSSLLLLL 198 (439)
Q Consensus 189 ~~~~~~~~~~ 198 (439)
+++.+++.++
T Consensus 190 ~ii~~i~~~i 199 (460)
T PRK11462 190 SVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHH
Confidence 6655554433
No 107
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.71 E-value=1.7e-15 Score=149.76 Aligned_cols=184 Identities=16% Similarity=0.081 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH---HhhcchHH
Q 013655 43 MEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL---SAFAPNYY 118 (439)
Q Consensus 43 ~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~~~~~~ 118 (439)
...+....+.|.+. +++|.+..+.++......++..++.++.|+++||+|||+++..+.++..++.+. ...+++..
T Consensus 264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG 343 (490)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34444455566554 668999888888888889999999999999999999999988777644433222 22344577
Q ss_pred HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHHHHHHH
Q 013655 119 LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~ 196 (439)
.+++++++.|++.+.. .....++.|.+|++.||+++|+......+++.++|.+.+++.+.. +|+.++++..+++++.+
T Consensus 344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~ 423 (490)
T PRK10642 344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL 423 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 7788888888876655 556677889999999999999855445666788999999888754 47777766666777766
Q ss_pred HHHhcccCCchhhhhc-----cchHHHHHHHHHHH
Q 013655 197 LLYSVTPESPRYLCLK-----GRTAEARHVLEKIA 226 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (439)
+..+++||+|++..++ ++.+|+++.+++++
T Consensus 424 ~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 424 ITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 6677789999876644 66677777766654
No 108
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.70 E-value=2.2e-15 Score=140.88 Aligned_cols=319 Identities=13% Similarity=0.114 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH--H-HHHHH
Q 013655 35 GMGWISEAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT--S-AAGLL 110 (439)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~--~-~~~~~ 110 (439)
...++..++.+....++.+...+ ..|+|.+++|.+.++..+...+.+|+.|.++||.|.||-++....+. . ...+.
T Consensus 13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~ 92 (412)
T PF01306_consen 13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI 92 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444445555565666665554 58999999999999999999999999999999999666544332222 1 22222
Q ss_pred Hhhc----chHH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655 111 SAFA----PNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 111 ~~~~----~~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~ 184 (439)
..+. .|.+ ..+++-+..|+..... ++.-+++.+.. ++.+.-.|-.-..+++|.+++..++|.+.+ .+-+..
T Consensus 93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~ 169 (412)
T PF01306_consen 93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNII 169 (412)
T ss_dssp HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHH
Confidence 2222 2222 2222223333333333 33334444332 334555677888999999999999999886 455667
Q ss_pred HHHhHHHHHHHHHHHhcc-cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCch
Q 013655 185 LGLSAFPSSLLLLLYSVT-PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTP 263 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (439)
|++..+..++..++.+.. |+.++.....+.. ++
T Consensus 170 fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~-~~--------------------------------------------- 203 (412)
T PF01306_consen 170 FWIASAAAIILLLLLLLLKPDVPPQAEVADAL-GA--------------------------------------------- 203 (412)
T ss_dssp HHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-SS---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-cc---------------------------------------------
Confidence 776666555554444333 2221100000000 00
Q ss_pred hhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHhhcCCCcc
Q 013655 264 KEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF-GNAFSYYGLVLLTTELNNGQNKC 342 (439)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
++++.+.....++++.+..+.+.+...... ...........+...+..+
T Consensus 204 --------------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~---- 253 (412)
T PF01306_consen 204 --------------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS---- 253 (412)
T ss_dssp --------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS----
T ss_pred --------------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 000000113455666554444333222211 1111111112222222211
Q ss_pred cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhh
Q 013655 343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 422 (439)
Q Consensus 343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 422 (439)
.+.+....+...++..+..++.-.+..++.+|+|.|+.++++..++++=.++..+.++.+.....=.+-++-..
T Consensus 254 ------~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~ 327 (412)
T PF01306_consen 254 ------AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFP 327 (412)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHH
T ss_pred ------cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 11222334777888888999999999999999999999999999999988888888887776666666666666
Q ss_pred heeeeeeeeccccccC
Q 013655 423 VTFTVVYVYAPEVSHR 438 (439)
Q Consensus 423 ~~~~~~~~~~~e~~p~ 438 (439)
......+-|+++.+|+
T Consensus 328 l~lva~fkYI~~~fd~ 343 (412)
T PF01306_consen 328 LLLVAAFKYITAHFDK 343 (412)
T ss_dssp HHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHHHHhCCH
Confidence 6655566666666664
No 109
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.69 E-value=6.4e-14 Score=135.89 Aligned_cols=292 Identities=15% Similarity=0.107 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHHHHHHHHHHhhc-c-hHHHHHHHHHHHhhccCcc-hhhHH
Q 013655 64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI-TAIVTSAAGLLSAFA-P-NYYLLLFFRCLVGLGLGGG-PVLAS 139 (439)
Q Consensus 64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~-~~~~~ 139 (439)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..++..++.+. + +++...+..++.-++.+.. ....+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999987766554 444444555555553 3 3444455555555666666 44558
Q ss_pred HHhhhcCCCch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhcc--------cchhHHH
Q 013655 140 WFLEFIPAPNR--------------------------GFWMVIFQTFWTVGTILEAGIAWLVMPR--------LGWRWLL 185 (439)
Q Consensus 140 ~~~~~~~~~~r--------------------------g~~~~~~~~~~~~g~~i~~~l~~~l~~~--------~g~~~~~ 185 (439)
++.+..+++++ ++..+.-...+.+|+++...+.-.+... .+.|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 9999998888888888777765554321 2357777
Q ss_pred HHhHHHHHHH-HHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchh
Q 013655 186 GLSAFPSSLL-LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPK 264 (439)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (439)
.+.++.-++. ....+++|+.|+....+....-.+...+++.
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-------------------------------------- 271 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW-------------------------------------- 271 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH--------------------------------------
Confidence 7777665554 4456677777542111111111111122211
Q ss_pred hhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHhhcCCCcc
Q 013655 265 EMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF--GNAFSYYGLVLLTTELNNGQNKC 342 (439)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
..++++.+.+....+++..+++. .+++...+..+-...
T Consensus 272 --------------------------------~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~-------- 311 (477)
T PF11700_consen 272 --------------------------------RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEV-------- 311 (477)
T ss_pred --------------------------------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 13444444333344444433333 222222222222222
Q ss_pred cccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhh--------ccccchhhh
Q 013655 343 VSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRK--LSMSSMFFCCCIFLVPLLF--------QQPKGLTTG 412 (439)
Q Consensus 343 ~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 412 (439)
.|++..+......+..+..++|.++.|++.||+|.| +++..+.++..+..+.-.+ .++.+.+++
T Consensus 312 ------lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~ 385 (477)
T PF11700_consen 312 ------LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV 385 (477)
T ss_pred ------cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence 336666667777788899999999999999999988 7777766666443333232 456677888
Q ss_pred HHHHHHhhhhheeeeeeeeccccccCC
Q 013655 413 LLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 413 ~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+.++.|++.|+.++..-++.+|+.|++
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g 412 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPPG 412 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCc
Confidence 888999999999999999999999974
No 110
>PRK09848 glucuronide transporter; Provisional
Probab=99.69 E-value=4e-15 Score=145.54 Aligned_cols=297 Identities=12% Similarity=0.007 Sum_probs=165.2
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc----chhHHH-HHHHHHHHHHHHHH-hh----cch--
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF----GRRKGF-LITAIVTSAAGLLS-AF----APN-- 116 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----G~r~~~-~~~~~~~~~~~~~~-~~----~~~-- 116 (439)
.++.+++.+.+|++..++|.+..+..+..++..++.|+++||. ||||.. ..+.+...+...+. .. .++
T Consensus 29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 4455677788899999999999999999999999999999996 777654 45555444333332 21 111
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCC-CchhhHHHHHHHHHH-----HHHHHHHHHHHHhhccc--chhHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIFQTFWT-----VGTILEAGIAWLVMPRL--GWRWLLGL 187 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-~~rg~~~~~~~~~~~-----~g~~i~~~l~~~l~~~~--g~~~~~~~ 187 (439)
.+.+++..++.+++.+.. ++..++..+...+ ++|.+..+....+.+ ++..++|.+.+...+.. +|.....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~ 188 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV 188 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 223344456667777766 5555666665544 678888777655433 44455555554332111 12111122
Q ss_pred hHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhh
Q 013655 188 SAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEM 266 (439)
Q Consensus 188 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
.+++.++..++ ....+|++.. +.++
T Consensus 189 ~~v~~~~~~~~~~~~~~e~~~~-----~~~~------------------------------------------------- 214 (448)
T PRK09848 189 LAIAGMVLYFICFKSTRENVVR-----IVAQ------------------------------------------------- 214 (448)
T ss_pred HHHHHHHHHHHHHcCcEeccCC-----CccC-------------------------------------------------
Confidence 22222222111 2222332100 0000
Q ss_pred cccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655 267 ARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE 346 (439)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
.+-...++.+++++......+..+..+ ..+.......+.+..+.
T Consensus 215 --------------------------~~~~~~~~~l~~n~~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------- 258 (448)
T PRK09848 215 --------------------------PSLKISLQTLKRNRPLFMLCIGALCVL---ISTFAVSASSLFYVRYV------- 258 (448)
T ss_pred --------------------------CCHHHHHHHHhCCchHHHHHHHHHHHH---HHHHHHhhhheeeEeee-------
Confidence 000114566676555443333332222 22222222334333221
Q ss_pred cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhhhe
Q 013655 347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVT 424 (439)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 424 (439)
.+.+............++.+++.++.+++.||+|+|+.+..+.++.+++.+.+.+.+ +.+...+..++.+++.+..
T Consensus 259 --~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 259 --LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred --cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 122222223333333566778999999999999999999999888877766665543 2334444556677787777
Q ss_pred eeeeeeecccccc
Q 013655 425 FTVVYVYAPEVSH 437 (439)
Q Consensus 425 ~~~~~~~~~e~~p 437 (439)
.+...++.+|..|
T Consensus 337 ~~~~~al~~~~~~ 349 (448)
T PRK09848 337 MTVMWALEADTVE 349 (448)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777776654
No 111
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.2e-14 Score=137.22 Aligned_cols=303 Identities=16% Similarity=0.115 Sum_probs=202.2
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHH-HHHHHHHHHHHHHHHhhcch-----
Q 013655 47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKG-FLITAIVTSAAGLLSAFAPN----- 116 (439)
Q Consensus 47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~----- 116 (439)
...+++-++.+..|+++..+|.+..+.-+.-++..|+.|.++|| +||+|. ++.+.+..++...++..+++
T Consensus 31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~ 110 (467)
T COG2211 31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTG 110 (467)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCc
Confidence 33445556788899999999999999999999999999999996 677555 56677778887777776663
Q ss_pred -HHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHH
Q 013655 117 -YYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMP-------RLGWRWLLG 186 (439)
Q Consensus 117 -~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~g~~~~~~ 186 (439)
....++...+.+++.... .+..++.++..+ +++|.+..+..+.+.++|..+...+...+.. ..||+....
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~ 190 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTAL 190 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 445667778888888887 555577788774 5789999999999999997776666555543 346777777
Q ss_pred HhHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhh
Q 013655 187 LSAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKE 265 (439)
Q Consensus 187 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (439)
+.+++.++..+.. +-.+|++.... ..++
T Consensus 191 ~~~vi~~i~~l~~~~~v~ER~~~~~---~~~~------------------------------------------------ 219 (467)
T COG2211 191 VLGVIGVILLLFCFFNVKERVVETQ---PTKT------------------------------------------------ 219 (467)
T ss_pred HHHHHHHHHHHHHHHHhhcccCccc---cCcc------------------------------------------------
Confidence 7777666665543 33444321000 0000
Q ss_pred hcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccc
Q 013655 266 MARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSN 345 (439)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (439)
+. + +.....+..+++++.++...+..++.++......+...+...+.
T Consensus 220 -------------~~--------~---~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~--------- 266 (467)
T COG2211 220 -------------GV--------K---LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV--------- 266 (467)
T ss_pred -------------cc--------c---ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE---------
Confidence 00 0 00001344555554433333333333322222222212211111
Q ss_pred ccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhhh
Q 013655 346 ELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITV 423 (439)
Q Consensus 346 ~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 423 (439)
.|.+...............+++.++...+.+|+|+|+++.++.++.+++.+++.+.+ +.++.++..++.+++.+.
T Consensus 267 ---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 267 ---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred ---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence 223333345666677777778899999999999999999999999999988888766 344555666788899999
Q ss_pred eeeeeeeeccccc
Q 013655 424 TFTVVYVYAPEVS 436 (439)
Q Consensus 424 ~~~~~~~~~~e~~ 436 (439)
..++.|++++|..
T Consensus 344 ~~~l~wam~~d~v 356 (467)
T COG2211 344 ANPLPWAMVADTV 356 (467)
T ss_pred cccccHHHhcchh
Confidence 9999999998875
No 112
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.67 E-value=3.9e-14 Score=130.42 Aligned_cols=327 Identities=13% Similarity=0.059 Sum_probs=224.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 013655 22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITA 101 (439)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 101 (439)
+..++||.++..+.+..+.+++.+..+++...+...-+| +....-|...++.+.+....+++-|+.|++|-|....++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 355778888888888888888888888887778888888 8888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc------hHH--HHHHHHHHHhhccCcch-hhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655 102 IVTSAAGLLSAFAP------NYY--LLLFFRCLVGLGLGGGP-VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA 172 (439)
Q Consensus 102 ~~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~ 172 (439)
.+.+++..+-..+. .++ ....+..+.+.+.-... .......-|+++++|..+..+-..++.+|.+++.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999988765542 344 56677777777777663 3345667889999999999999999999999988888
Q ss_pred HHhhccc------chhHH--HHHhHHHHHHHHHHH-hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchh
Q 013655 173 WLVMPRL------GWRWL--LGLSAFPSSLLLLLY-SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 243 (439)
Q Consensus 173 ~~l~~~~------g~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
..+..+- .|... |+...++..+.+++. +..++.|+......+. . .+
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~---~--~~-------------------- 251 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA---A--LQ-------------------- 251 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh---h--hh--------------------
Confidence 8776543 35553 443333333333322 2223333211000000 0 00
Q ss_pred hhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 013655 244 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAF 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 323 (439)
+.+-..+++.+++++ .+++..+.+..+..
T Consensus 252 ------------------------------------------------~~~f~~si~~~~~n~---~F~il~~~ygi~~g 280 (480)
T KOG2563|consen 252 ------------------------------------------------DASFPKSIKSCFKNR---QFIILAICYGIGLG 280 (480)
T ss_pred ------------------------------------------------cCcHHHHHHHHHcCc---cHHHHHHHHhhhHH
Confidence 000112566666653 34556666666667
Q ss_pred hhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHh
Q 013655 324 SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGR-KLSMSSMFFCCCIFLVPLL 402 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~ 402 (439)
.+++.+..+...... .|++...++.......+++++|.++.|.+.||.+. |.++.+......++.+.+.
T Consensus 281 ~F~~l~~~l~~~l~~----------sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~ 350 (480)
T KOG2563|consen 281 LFNSLSTLLNLALCP----------SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL 350 (480)
T ss_pred HHHHHHHHhhhcccc----------ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777666533322 33555566888888899999999999999999864 5555555555444422222
Q ss_pred -h---ccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655 403 -F---QQPKGLTTGLLFGARICITVTFTVVYVYAPEV 435 (439)
Q Consensus 403 -~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~ 435 (439)
. ..+.+.......+.|++..+.+|+..-+..|.
T Consensus 351 ~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~ 387 (480)
T KOG2563|consen 351 TCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVET 387 (480)
T ss_pred HhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeee
Confidence 1 22345556667788888889899888887776
No 113
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.66 E-value=4.3e-15 Score=137.34 Aligned_cols=237 Identities=12% Similarity=0.053 Sum_probs=163.6
Q ss_pred hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-------------
Q 013655 113 FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR------------- 178 (439)
Q Consensus 113 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~------------- 178 (439)
...+++.++++.++.|.|.+.. +...+++++..+++++++.+++.+.++++|..++|.+++.+...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4568999999999999999999 88889999999999999999999999999999999999987732
Q ss_pred ---cchhHHHHHhHHHHHHHHHHHhcc--cCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccC
Q 013655 179 ---LGWRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLS 253 (439)
Q Consensus 179 ---~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (439)
.+|+.+|++.++..++..+.+.+. ||.+ ++.++ + .
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~~~~~--~----~---------------------------- 125 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------EADVA--R----V---------------------------- 125 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------ccccc--c----c----------------------------
Confidence 468999887766655554444443 3210 00000 0 0
Q ss_pred CCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 013655 254 SSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTT 333 (439)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
++ ++.. ..+..++. +..++..+..++......+...|.+
T Consensus 126 --------------------~~-~~~~-----------------~~~~~~~~---~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 126 --------------------SS-GDTT-----------------QKTSAFQF---THLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred --------------------cc-cccc-----------------chhhHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00011222 2233344444444445556667777
Q ss_pred HhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhH
Q 013655 334 ELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGL 413 (439)
Q Consensus 334 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (439)
.|..+.. ..|.+....+...+.+..+.++|+++++++.||+|+|+.+..+..+++++.++....+. ......
T Consensus 165 ~yl~~~~-------~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~-~~~~~~ 236 (310)
T TIGR01272 165 NFLSDPH-------ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG-YVAMWF 236 (310)
T ss_pred HHHHhcc-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 7774321 13467777788899999999999999999999999988888887777776655544433 233445
Q ss_pred HHHHHhhhhheeeeeeeeccccccC
Q 013655 414 LFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 414 ~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.++.|++.+..+|...+...+.+|+
T Consensus 237 ~~l~g~~~s~i~P~~~s~a~~~~~~ 261 (310)
T TIGR01272 237 VLALGLFNSIMFPTIFSLALNALGR 261 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6678899999999988887776664
No 114
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.62 E-value=4.1e-14 Score=132.51 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=134.5
Q ss_pred HHHHHhhhcC----CCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Q 013655 51 VGPAVQSLWH----LSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFF 123 (439)
Q Consensus 51 ~~~~~~~~~~----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 123 (439)
+.-|+..+++ +|.+++.-+.+++.....+..+++||++||+ |+|+++++|.++.+++.++.+..+ +...+.++
T Consensus 44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~ 123 (498)
T COG3104 44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG 123 (498)
T ss_pred HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence 3344555555 9999999999999888889999999999995 999999999999999999999884 78889999
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHh
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAP--NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYS 200 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 200 (439)
..+.++|.|.. +...+++.|.+|++ +|-..++++..+.++|+.++|.+.+++.+++||+..|...++-..+.++.+.
T Consensus 124 L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 88889999999764 4777888899999999999999999999999999999999988888877766
Q ss_pred ccc
Q 013655 201 VTP 203 (439)
Q Consensus 201 ~~~ 203 (439)
..+
T Consensus 204 ~~~ 206 (498)
T COG3104 204 LGR 206 (498)
T ss_pred Hcc
Confidence 654
No 115
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.61 E-value=2.1e-14 Score=138.79 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=126.3
Q ss_pred HHHHHHhhhcCCC--------chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc----hH
Q 013655 50 FVGPAVQSLWHLS--------PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP----NY 117 (439)
Q Consensus 50 ~~~~~~~~~~~~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~ 117 (439)
.+.+.+.++.|.+ .+..+.+.++..++..++.++.|+++||+|+|+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 3345455556644 36679999999999999999999999999999999999999888876666532 24
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcc------cchhHHHHHhH
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPR------LGWRWLLGLSA 189 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~------~g~~~~~~~~~ 189 (439)
+.+++.+++.|++.+.. +....++.|++|+++|++++|+.+ ...++|..+||+++|++.+. +||+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 56677889999998877 666788899999999999999997 67889999999999999887 46999999888
Q ss_pred HHHHHHHHH-HhcccCC
Q 013655 190 FPSSLLLLL-YSVTPES 205 (439)
Q Consensus 190 ~~~~~~~~~-~~~~~~~ 205 (439)
++.++..++ .++++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 777766554 5556665
No 116
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.60 E-value=2.6e-14 Score=136.31 Aligned_cols=148 Identities=20% Similarity=0.109 Sum_probs=125.1
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHH
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY--YLLLFFRCL 126 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 126 (439)
....+.+.++++.+..+.+++.+...++..+++++.|++.||+|||+.+..+..+.+++.++..+.++. ..+++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 334455667789999999999999999999999999999999999999999988888888777766543 334456677
Q ss_pred HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655 127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 196 (439)
.|++.+.. .....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.+++.+++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 78887776 56667889999999999999999999999999999999999999999999988887766643
No 117
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.60 E-value=5.3e-14 Score=142.67 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhc
Q 013655 67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFI 145 (439)
Q Consensus 67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~ 145 (439)
.+...+..++.+++.+++|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+.. ++..++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677899999999999999999999999999999999999888888878888888888877766 77778999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCCc
Q 013655 146 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESP 206 (439)
Q Consensus 146 ~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (439)
|++.|++++|+.+....+|.+++|.+++.+.+. +...+|++.+++.+++.++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999988764 456778877777777777777778863
No 118
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.60 E-value=8.1e-14 Score=133.96 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=125.3
Q ss_pred HHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 50 FVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 50 ~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
...| ++.+++|.+..+.+++.+...+...++.+++|+++||+|||+.+..+.....+......+.++++.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444 455778999999999988888888889999999999999999887776665555555555677777788888888
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccC
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPE 204 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 204 (439)
++.|.. +....+..|..|+ +||+++++++...++|..++|.+++.+.+.+||+..+.+.+++.++.++..+++||
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777765 5555667888875 59999999999999999999999999999999999999888888887777766654
No 119
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.58 E-value=8.2e-13 Score=119.62 Aligned_cols=178 Identities=21% Similarity=0.162 Sum_probs=125.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
..+.|+.-+....+ .....+..+++.-.+.+++|+++.+++.+....+....+.+++.|.++||+|||+.-++.++
T Consensus 32 f~~Fqr~yl~vY~L----a~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~ci 107 (354)
T PF05631_consen 32 FRRFQRKYLLVYLL----AMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCI 107 (354)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 33444444433333 33444566666666668899999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHH-hhhc----CCCchhhHHHHHH-HHHHHHHHHHHHHHHHh
Q 013655 103 VTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWF-LEFI----PAPNRGFWMVIFQ-TFWTVGTILEAGIAWLV 175 (439)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~-~~~~----~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l 175 (439)
+.+++++. -..++++.++++|++.|++.... .+--++. .|.- |++..+..++... ..+++-.+.+..++.++
T Consensus 108 ly~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 108 LYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred HHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 88888864 45688999999999999999988 5444654 4542 3333344444444 34455556667777777
Q ss_pred hcccch--hHHHHHhHHHHHHHHHHHh-cccCC
Q 013655 176 MPRLGW--RWLLGLSAFPSSLLLLLYS-VTPES 205 (439)
Q Consensus 176 ~~~~g~--~~~~~~~~~~~~~~~~~~~-~~~~~ 205 (439)
.+..+. ..+|....++.+++.++.. ..+|+
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 776654 6788877777666655443 33444
No 120
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.58 E-value=6.7e-14 Score=135.81 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=125.3
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hh
Q 013655 58 LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PV 136 (439)
Q Consensus 58 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~ 136 (439)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++..++++.+.+++.+++.|++.+.. +.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788899999999999999999999999999999999999998888888888889998889999999887776 55
Q ss_pred hHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hcccC
Q 013655 137 LASWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPE 204 (439)
Q Consensus 137 ~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (439)
...++.+.+|++.|+...+. ++.+..+|..+++++.+++.+.+||+..|.+.+++.++..++. +.+++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66888899999999888766 6778899999999999999999999999998887776655443 33443
No 121
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.58 E-value=1.5e-13 Score=132.84 Aligned_cols=158 Identities=20% Similarity=0.111 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 013655 45 MMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFR 124 (439)
Q Consensus 45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (439)
......+.|.+.++.|.+..+.+++.+...++..+++++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAG 315 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33444556777788899999999999999999999999999999999999998887777777777777777777777777
Q ss_pred HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHhcc
Q 013655 125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
++.|++.+.. +...++..|.+|+++|+++.|+.+....+|..++|.+.+++.+..+ |...++....+.++..+..+.+
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666 6677888999999999999999999999999999999999988654 5555655555555555544443
No 122
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.1e-15 Score=129.81 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTS 105 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~ 105 (439)
|...+..+++..+...+.+..+.....++..+.+++.++..++.+++.....+..+++|++.|| +|-|...++-++...
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 3444445555556666777777777778888889999999999999999999999999999997 687777666666666
Q ss_pred HHHHHHh---hcchHHHHHHHHHHHhhccCcchhh-HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 106 AAGLLSA---FAPNYYLLLFFRCLVGLGLGGGPVL-ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 106 ~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~-~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
++.+.++ ..+.+|++.++|++.|+|.-...+. ..++..|+..++.+.++|+......+|+.+--.+.+++.+..+
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 7776665 4578999999999999998777544 4888899999999999999999999999888777887766543
No 123
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.58 E-value=1.6e-14 Score=117.04 Aligned_cols=132 Identities=20% Similarity=0.301 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC
Q 013655 70 TSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP 148 (439)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~ 148 (439)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+.. +....++.|..|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788899999999999999999999999999998888888899999999999999998887 67778899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 149 NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 149 ~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
+|++..++.+....+|..+++.+.+++.+..+|+..+++.++..++..+...+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998888777766555433
No 124
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.56 E-value=3.6e-13 Score=127.05 Aligned_cols=163 Identities=29% Similarity=0.335 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH-HHHHHHHHHHHHHHHHhhcch
Q 013655 39 ISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK-GFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~~~~~~ 116 (439)
+.............|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS 264 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444445556666555 4999999999999999999999999999999999999 999999999999999998888
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
.+...+..++.|++.+.. +....++.|..|+++|++.+|+.+....+|..+++.+.+.+.+..+|+..+.+.+++.++.
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~ 344 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence 899999999999999988 7788999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHhc
Q 013655 196 LLLYSV 201 (439)
Q Consensus 196 ~~~~~~ 201 (439)
.+....
T Consensus 345 ~i~~~~ 350 (352)
T cd06174 345 ALLLLL 350 (352)
T ss_pred HHHhee
Confidence 766544
No 125
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.55 E-value=4.1e-13 Score=129.47 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=128.7
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
..+.+.+.++.|. ...++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|
T Consensus 236 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 236 ATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444455565 34566778888899999999999999999999999888888888888888888888888899999
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
++.+.. +.......+..|+++||++.|+++....+|..+++++.+++.+..||+..+++.+++.++..+..+.++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 998877 55567778899999999999999999999999999999999999999999999888887776665555444
No 126
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.54 E-value=3.6e-13 Score=132.42 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 109 (439)
++...+..++..........+.|. +.+++|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 333444444444444445556664 5577999999999999999999999999999999999999877665444433322
Q ss_pred --HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhc--------
Q 013655 110 --LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMP-------- 177 (439)
Q Consensus 110 --~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~-------- 177 (439)
.....++.+...+.+++.|++.... ........|.+|++.||++.|+.+....+ |..++|.+.|++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 2233456666667777888654333 33345667999999999999999988886 77999999999999
Q ss_pred ----ccchhHHHHHhHHHHHHHHHHHhcc
Q 013655 178 ----RLGWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 178 ----~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
..||+..|++..++.+++.+..+++
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999988877777766555443
No 127
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.54 E-value=4.1e-13 Score=128.56 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=130.5
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 013655 47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126 (439)
Q Consensus 47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (439)
....+.|.+.+++|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.+..++...+.++.++.+.+++..++
T Consensus 223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l 302 (382)
T TIGR00902 223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL 302 (382)
T ss_pred HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 33344555557799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 013655 127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY 199 (439)
Q Consensus 127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 199 (439)
.|++.+.. +....++.+. |+++|+++.++++ ...++|..+++.++|++.|.+|+ ..|+..+++.++.+++.
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 99999998 7777888887 9999999999976 57889999999999999999986 56666666666554443
No 128
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.54 E-value=8.3e-13 Score=126.11 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=125.4
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG 132 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 132 (439)
.++.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+..+.++..+......+.++.+.+.+.+++.|++.+
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457789999999998888888888889999999999999999888877766666666666778888888888898888
Q ss_pred cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhccc
Q 013655 133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (439)
.. +....++.|..|+ ++++++++++....+|..++|.+.+++.+..||+..+++.+++.++..+...+++
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 76 6666777888775 5679999999999999999999999999999999999998888887777666554
No 129
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.53 E-value=2.1e-12 Score=118.53 Aligned_cols=290 Identities=15% Similarity=0.070 Sum_probs=189.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH-HHHHHHHHHHHHHhhcch--H-HHHHHHHHHHhhccCcch-hhH
Q 013655 64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL-ITAIVTSAAGLLSAFAPN--Y-YLLLFFRCLVGLGLGGGP-VLA 138 (439)
Q Consensus 64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~g~~~-~~~ 138 (439)
+..|...++..+..++.+|+.|.++|+.|+||..+ ....+..++..+..+.++ + +..++...+..++..... ...
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 45678888999999999999999999999776654 444455555555556544 4 444555667777777764 455
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH--Hh-h---------------cccchhHHHHHhHHHHHHHHH-HH
Q 013655 139 SWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW--LV-M---------------PRLGWRWLLGLSAFPSSLLLL-LY 199 (439)
Q Consensus 139 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~--~l-~---------------~~~g~~~~~~~~~~~~~~~~~-~~ 199 (439)
+++.+..++++-++..++-.....+|+.+.-.+.- .+ . +...-|..+.+.++..++..+ .+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 89999999999888888866666666655444321 11 1 122356677777766655544 34
Q ss_pred hcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhc
Q 013655 200 SVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEM 279 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (439)
+..++.++.. .......+...++
T Consensus 218 ~~v~~~~~~~--~~~~~~l~~g~k~------------------------------------------------------- 240 (438)
T COG2270 218 LNVHDAEKIS--SPPPTALRNGFKE------------------------------------------------------- 240 (438)
T ss_pred hccccccccc--ccchHHHHHHHHH-------------------------------------------------------
Confidence 4444443210 0000011111111
Q ss_pred cccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCch
Q 013655 280 KSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFF--GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINY 357 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 357 (439)
-+.+++++++++....+++..+.+. .++....+..+-... .|.+.....
T Consensus 241 ---------------L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~--------------~gls~~~ll 291 (438)
T COG2270 241 ---------------LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD--------------LGLSSTELL 291 (438)
T ss_pred ---------------HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------------cCccHHHHH
Confidence 1225666665555555555544443 233322222222222 235555667
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655 358 GDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSH 437 (439)
Q Consensus 358 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p 437 (439)
.......+..++|+++.|++.||+|.|+++..+.++..+..+...+.......+++..+.|++.|+.++..=++.++++|
T Consensus 292 l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp 371 (438)
T COG2270 292 LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVP 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCC
Confidence 77778889999999999999999999999999998888888777777666667777888999999999999999999998
Q ss_pred CC
Q 013655 438 RS 439 (439)
Q Consensus 438 ~~ 439 (439)
++
T Consensus 372 ~~ 373 (438)
T COG2270 372 KG 373 (438)
T ss_pred Cc
Confidence 74
No 130
>PRK03545 putative arabinose transporter; Provisional
Probab=99.52 E-value=3.1e-12 Score=122.90 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=121.1
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHH
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG-LLSAFAPNYYLLLFFRCLV 127 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 127 (439)
....|++.+++|.|..+.+++.+...++..+++++.|++.||+|||+... +..+..++. .+....++.+.++++.++.
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 34445566678999999999999999999999999999999999887544 444444443 3344567788888888899
Q ss_pred hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
|++.+.. +.....+.+..| ++|++++|+++....+|..+||.+++++.+.+|++..++..+++.+++++....
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 9987766 555567777765 688999999999999999999999999999999999999998888776665443
No 131
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.52 E-value=1.2e-12 Score=126.18 Aligned_cols=164 Identities=18% Similarity=0.154 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH-HHHHHHHHHHHHHh----
Q 013655 38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL-ITAIVTSAAGLLSA---- 112 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~---- 112 (439)
.+...........+.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~ 310 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ 310 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556678788889999999999999999999999999999999999888764 33333333322222
Q ss_pred -hcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHH
Q 013655 113 -FAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFP 191 (439)
Q Consensus 113 -~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~ 191 (439)
..++.+...+..++.|++.+...+....+.+. ++++||++.|+.+....+|..++|.+.+.+.+..||...+++.+++
T Consensus 311 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 311 HFGHSFAVALIIAIALGIFLAGYVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 12456677778888888877663334555665 4568999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcc
Q 013655 192 SSLLLLLYSVT 202 (439)
Q Consensus 192 ~~~~~~~~~~~ 202 (439)
.++..++..++
T Consensus 390 ~~i~~~~~~~~ 400 (402)
T TIGR00897 390 YVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHh
Confidence 87776665544
No 132
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.52 E-value=9.6e-13 Score=127.22 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhh
Q 013655 66 ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEF 144 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~ 144 (439)
.+.+.++..++..++.+..|+++||+|||+.+..+..+.+++.+...+.++.+.+.+.+++.|++.+.. +...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 456667778888899999999999999999999988888887777777788888889999999999887 6666778888
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 145 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 145 ~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
.|+++||+.+++.+....+|..+||.+++.+.+..||+..|++.+++.++..+..+.
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998888777665443
No 133
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.51 E-value=6.1e-13 Score=129.00 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=131.4
Q ss_pred HHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655 49 SFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV 127 (439)
Q Consensus 49 ~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (439)
..+.|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 3345555555 899999999999999999999999999999998888888888888888888888888888888888888
Q ss_pred hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH-HHHHhcccCC
Q 013655 128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPES 205 (439)
Q Consensus 128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 205 (439)
|++.+.. +...+++.+..|++.||+++|++.....+|..+||.+.+++.+.+|++..+++.+++.++. .+....+++.
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 9888776 5556788899999999999999999999999999999999999999998888777665554 4445555554
No 134
>PRK12382 putative transporter; Provisional
Probab=99.49 E-value=1.9e-12 Score=124.50 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=127.3
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655 48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV 127 (439)
Q Consensus 48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (439)
...+.+.+.++.+.+. .++....+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+..++..++.
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (392)
T PRK12382 235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3344455555566653 56667778888899999999999999999999999888888888888888888888889999
Q ss_pred hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
|++.+.. +.....+.+..|+++||++.|+.+....+|..++|.+.+++.+..||+..|.+.+++.++..+..+.
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9998877 6666778899999999999999999999999999999999999999999999988887776665443
No 135
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.48 E-value=5.6e-13 Score=130.43 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHHHH--HHHHHHHHHHHHhh
Q 013655 38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGFLI--TAIVTSAAGLLSAF 113 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~--~~~~~~~~~~~~~~ 113 (439)
.+...........++|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++..+
T Consensus 250 ~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 329 (455)
T TIGR00892 250 NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL 329 (455)
T ss_pred HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444455666677899999999999999999999999999999983 34443333 33444455556667
Q ss_pred cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhHHH
Q 013655 114 APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-GWRWLLGLSAFP 191 (439)
Q Consensus 114 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-g~~~~~~~~~~~ 191 (439)
.++++.+++.+++.|++.+.. +...+++.|.+|++++++.+|+++...++|..++|.+++.+.+.. +|+..|++.+++
T Consensus 330 ~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~ 409 (455)
T TIGR00892 330 AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI 409 (455)
T ss_pred hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence 788888889999999998887 667788899999999999999999999999999999999999877 499999888877
Q ss_pred HHHHHH
Q 013655 192 SSLLLL 197 (439)
Q Consensus 192 ~~~~~~ 197 (439)
.+++.+
T Consensus 410 ~li~~~ 415 (455)
T TIGR00892 410 VVSAGL 415 (455)
T ss_pred HHHHHH
Confidence 665544
No 136
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.47 E-value=3.7e-12 Score=121.93 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=121.4
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
..+.|.+.++.|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.|
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 3456777777899999999999999999999999999999999999998888777777665443 2 223344566677
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcc
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
++.+.. +...+.+.|..|+++++...+..+...++|..++|.+++++.+++||+..|.+.+.+.++..+..+..
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 765555 77778888999988888888888889999999999999999999999999998888777665554443
No 137
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.46 E-value=1.7e-12 Score=128.92 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=113.0
Q ss_pred HHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHH
Q 013655 49 SFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--PNYYLLLFFRC 125 (439)
Q Consensus 49 ~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 125 (439)
..+.|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.... .+.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34556555 6899999999999999999999999999999999999999888877666655443332 33444444444
Q ss_pred HHhh-ccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHH
Q 013655 126 LVGL-GLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL 194 (439)
Q Consensus 126 l~G~-~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~ 194 (439)
+.+. +.+.......++.+.+|+++||+++|+......+|..++|.+++++.+.+||+..+...+....+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 4433 33333556678889999999999999999999999999999999999999999887665544333
No 138
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.45 E-value=6e-12 Score=120.95 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc-hHHHH
Q 013655 42 AMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP-NYYLL 120 (439)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~ 120 (439)
.........+.|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+
T Consensus 218 ~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (393)
T PRK09705 218 NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL 297 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 33444455556666667899999999999999999999999999999999999998888877777766554333 22222
Q ss_pred HHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHH
Q 013655 121 LFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~ 197 (439)
..++.|++.+.. +.......+..+ ++++|+..|+.+....++..++|.+.+++.+..| |...|++.++..++..+
T Consensus 298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK09705 298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI 375 (393)
T ss_pred --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 234567777776 555556666665 5789999999999999999999999999999876 77778877766666554
Q ss_pred H-HhcccCCc
Q 013655 198 L-YSVTPESP 206 (439)
Q Consensus 198 ~-~~~~~~~~ 206 (439)
. ..+.||++
T Consensus 376 ~~~~~~~~~~ 385 (393)
T PRK09705 376 ITLRFAPARF 385 (393)
T ss_pred HHHHhccccc
Confidence 4 44556653
No 139
>PRK03699 putative transporter; Provisional
Probab=99.45 E-value=3.8e-12 Score=122.43 Aligned_cols=165 Identities=11% Similarity=0.046 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655 38 WISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
.++..........+.|.+. +++|+|..+.+++.+.+.++..++.++.|+++||++||+.+.....+.++...+....++
T Consensus 214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~ 293 (394)
T PRK03699 214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333344445556555 678999999999999999999999999999999999999988887777777667667777
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
.+.+.+..++.|++.+.. +...+...+..| +++++..+.......+|..++|.+.+++.+..|++..++..+++.+++
T Consensus 294 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 294 PSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV 372 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence 777777778888877665 555566667665 446778889888899999999999999999999999998888777777
Q ss_pred HHHHhccc
Q 013655 196 LLLYSVTP 203 (439)
Q Consensus 196 ~~~~~~~~ 203 (439)
.+..+.++
T Consensus 373 ~~~~~~~~ 380 (394)
T PRK03699 373 FVMCILLG 380 (394)
T ss_pred HHHHHHHH
Confidence 66555544
No 140
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.44 E-value=3.5e-12 Score=125.69 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655 30 VLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 109 (439)
.++...+..+...........+.|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+..+.++.+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33334444444444444556677888889999998899999999999999999999999999999999988887777766
Q ss_pred HHhh-----cc------hHHHHHHHHH-HHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 110 LSAF-----AP------NYYLLLFFRC-LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 110 ~~~~-----~~------~~~~~~~~~~-l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
+..+ .+ +...+....+ ..+++.+..+....++.|.+|+++|++++++.+...++|.+++|.+.+++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 11 2222222222 2233333335556777999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhHHHHHHHHHHH-hcccCC
Q 013655 178 RLGWRWLLGLSAFPSSLLLLLY-SVTPES 205 (439)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (439)
..+|+..|++.++++++..++. ++.||+
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecccC
Confidence 8999999988888877766554 445654
No 141
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.44 E-value=1.6e-12 Score=124.70 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH--HHHhh-
Q 013655 38 WISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG--LLSAF- 113 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~--~~~~~- 113 (439)
.+...........+.|.+. +++|.+..+.+.+.....++..++.++.|+++||+|||+.+..+..+..+.. +...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL 307 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444445555554 7789999999999999999999999999999999999998775554443322 12222
Q ss_pred -cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhH
Q 013655 114 -APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSA 189 (439)
Q Consensus 114 -~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~ 189 (439)
.++.+.+.+..++.|++.+.. ++..+.+.|.+|+++|+++.++ .+.+..+|..++|.+++++.+..| |+..++...
T Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 246667777778888887776 7777899999999999999998 556677899999999999999888 887776666
Q ss_pred HHHH
Q 013655 190 FPSS 193 (439)
Q Consensus 190 ~~~~ 193 (439)
+..+
T Consensus 388 ~~~l 391 (394)
T TIGR00883 388 ALAL 391 (394)
T ss_pred HHHH
Confidence 5444
No 142
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.44 E-value=1e-11 Score=119.12 Aligned_cols=166 Identities=18% Similarity=0.128 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH--HHH------HHHHHH
Q 013655 34 AGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK--GFL------ITAIVT 104 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~--~~~------~~~~~~ 104 (439)
..+..+...........+.|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 3334444444444555555544 5668999999999999999999999999999999999986 111 111111
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhH
Q 013655 105 SAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRW 183 (439)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~ 183 (439)
++........++.+......++.+++.+..+...+++.|..|+++|+++.|+.+....+|..++|.+.+++.+..| |+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 379 (399)
T TIGR00893 300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG 379 (399)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence 1111122222344444444455555555337777899999999999999999999999999999999999999988 999
Q ss_pred HHHHhHHHHHHHHHHH
Q 013655 184 LLGLSAFPSSLLLLLY 199 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~ 199 (439)
.+++.++..++..+..
T Consensus 380 ~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 380 ALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988887777665544
No 143
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.44 E-value=1.8e-11 Score=112.81 Aligned_cols=285 Identities=14% Similarity=0.103 Sum_probs=178.9
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----hhHHHH-HHHHHHHHHHHHHhh-----cc-------
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-----RRKGFL-ITAIVTSAAGLLSAF-----AP------- 115 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~-~~~~~~~~~~~~~~~-----~~------- 115 (439)
.+..|++++....+.+.+...+... ..+.+|+.+|+.+ ||..++ .|.++.+.+..+.++ ..
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 3567889999999999988888765 5899999999988 776544 555555555544433 22
Q ss_pred hH--H--HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHH
Q 013655 116 NY--Y--LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAF 190 (439)
Q Consensus 116 ~~--~--~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~ 190 (439)
+. + ...+..++.|+|.+.. .+..++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+......-+...
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 22 2 2345667788888887 66779999999999999999999999999999999999999888774433322222
Q ss_pred HHH---HHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhc
Q 013655 191 PSS---LLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMA 267 (439)
Q Consensus 191 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (439)
..+ ...++..+-.|++..... ...+ ++
T Consensus 164 ~a~i~~~l~~ia~wg~E~r~~~~~-~~~~-----------------------------------------~~-------- 193 (403)
T PF03209_consen 164 VALIALLLNLIALWGQEPRRSRRA-AAAE-----------------------------------------RP-------- 193 (403)
T ss_pred HHHHHHHHHHHHHHhcccCCcccc-cCCC-----------------------------------------CC--------
Confidence 222 222222222222110000 0000 00
Q ss_pred ccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccc
Q 013655 268 RDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST-LLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNE 346 (439)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
+.+....++++...+.-+++ ..+++ .++.++.....+..|.-+
T Consensus 194 ------------------------~~~f~~a~~~~~~~~~a~~f~~fl~l----~t~a~~~QD~iLEPygg~-------- 237 (403)
T PF03209_consen 194 ------------------------RPPFREAWRQVWASPQARRFFVFLFL----GTLAFFMQDVILEPYGGE-------- 237 (403)
T ss_pred ------------------------CccHHHHHHHHHhCCChhHHHHHHHH----HHHHHHhhHHHcCCchhH--------
Confidence 00011155555543333333 23322 233333344444334322
Q ss_pred cccCCCCCCchhhHHHHhhhhhhHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhh---ccccchhhhHHHHHHhhhh
Q 013655 347 LQSGKSRDINYGDVFITSFAEFPGLLLAAAMVD-RLGRKLSMSSMFFCCCIFLVPLLF---QQPKGLTTGLLFGARICIT 422 (439)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~ 422 (439)
-.|++..+...+....+.+..+|..+.|++.. |.+.++....++..+.+++.++.. ..+.+.+....+++|++.|
T Consensus 238 -Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 238 -VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 24466666777888888888999999998777 677777777888877777666553 3456677777888888876
Q ss_pred heee
Q 013655 423 VTFT 426 (439)
Q Consensus 423 ~~~~ 426 (439)
....
T Consensus 317 ~f~v 320 (403)
T PF03209_consen 317 LFTV 320 (403)
T ss_pred HHHH
Confidence 6543
No 144
>PRK09952 shikimate transporter; Provisional
Probab=99.43 E-value=1.8e-11 Score=119.35 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=115.8
Q ss_pred HHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh---c-chHHHHHH
Q 013655 48 LSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---A-PNYYLLLF 122 (439)
Q Consensus 48 ~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 122 (439)
...+.| ++.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.... . ++.+.+++
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF 348 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 333444 455678888877666666677777888999999999999999988877665554433322 2 23444455
Q ss_pred HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHH
Q 013655 123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTILEAGIAWLVMPRL--GWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~i~~~l~~~l~~~~--g~~~~~~~~~~~~~~~~~~ 198 (439)
..++.+++.+.. +...+++.|.+|++.|+.+.|+. +.+..+|+.++|.+.+++.+.. +|+..+.+.+++.++..+.
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 566667777766 66778899999999999999984 4555689999999999998744 4888888887777777766
Q ss_pred HhcccCC
Q 013655 199 YSVTPES 205 (439)
Q Consensus 199 ~~~~~~~ 205 (439)
.+.++++
T Consensus 429 ~~~~~~~ 435 (438)
T PRK09952 429 ALLMKDN 435 (438)
T ss_pred HHHcccc
Confidence 6666654
No 145
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.43 E-value=6.1e-12 Score=119.33 Aligned_cols=184 Identities=18% Similarity=0.155 Sum_probs=143.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSL--WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLI 99 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~ 99 (439)
.++.+|+.+++..+..+.......+..+..-.+.++ .+.+.+..|++.++..++.+++++..|+...|.+. |+.++.
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~ 107 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV 107 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence 446678888888888888877776665544344444 77888899999999999999999999999999986 888999
Q ss_pred HHHHHHHHHHHH-hh---cc-hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655 100 TAIVTSAAGLLS-AF---AP-NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL 174 (439)
Q Consensus 100 ~~~~~~~~~~~~-~~---~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~ 174 (439)
+.++.+++.++. ++ .+ ..+.++++|++.|+|.|...+.-+++++....++|.++++....+..+|..+||.+...
T Consensus 108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 999999998887 33 23 57889999999999999888888999998888999999999999888999999888776
Q ss_pred hhcc--cc-----------hhHHHHHhHHHHHHHHHH-HhcccCCc
Q 013655 175 VMPR--LG-----------WRWLLGLSAFPSSLLLLL-YSVTPESP 206 (439)
Q Consensus 175 l~~~--~g-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~ 206 (439)
+... .| +..+-++.+++.++.++. .+++.|..
T Consensus 188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 5421 11 344566666666665554 45555553
No 146
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.42 E-value=2.3e-11 Score=118.31 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655 48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV 127 (439)
Q Consensus 48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (439)
.....|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..++....++.....+..++.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456666677899999999999999999999999999999999999998888877666655444332211122222233
Q ss_pred hh--ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655 128 GL--GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL 187 (439)
Q Consensus 128 G~--~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~ 187 (439)
|+ +.... ...+.++.|.+|+++||+++|+......+|+.++|.+.+++.+..|+....++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 33 22222 44557788999999999999999999999999999999999998887654333
No 147
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.42 E-value=8.7e-12 Score=120.28 Aligned_cols=137 Identities=20% Similarity=0.235 Sum_probs=111.7
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHhhc
Q 013655 52 GPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL-LSAFAPNYYLLLFFRCLVGLG 130 (439)
Q Consensus 52 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~ 130 (439)
.+++.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.++..+ .....++.+.+.+..++.|++
T Consensus 262 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (405)
T TIGR00891 262 PTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQML 341 (405)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999999999999999998887766533332 333445666666666677766
Q ss_pred cCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHh
Q 013655 131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLS 188 (439)
Q Consensus 131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~ 188 (439)
.+.. +....++.|..|+++|++++|+.+....+|..++|++.+++.+..| |+..+...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 5555 6677888999999999999999999999999999999999999988 87766553
No 148
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=6.4e-12 Score=124.02 Aligned_cols=303 Identities=14% Similarity=0.149 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
+.+..+..+.+++....+...+..+.+.++++.++.|++.+.+-++..+...+..+..-|..|-|.+-+|.++++++.++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence 44455566667776677777788899999999999999999999999999999999999999989999999999998887
Q ss_pred Hhhc--------------------c-----------------------------h--HH-HHHHHHHHHhhccCcc-hhh
Q 013655 111 SAFA--------------------P-----------------------------N--YY-LLLFFRCLVGLGLGGG-PVL 137 (439)
Q Consensus 111 ~~~~--------------------~-----------------------------~--~~-~~~~~~~l~G~~~g~~-~~~ 137 (439)
+++- + + ++ +++++.++.|+|.... +..
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 6640 0 0 22 4567789999999988 778
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------------------c-hhHHHHHhHHHHHHHHHH
Q 013655 138 ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL------------------G-WRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 138 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~------------------g-~~~~~~~~~~~~~~~~~~ 198 (439)
.+++-|...+++-+..+|+......+|-++|-++++++.+.+ | |..-|++.+.+.++..+.
T Consensus 259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998875421 1 666778888888888888
Q ss_pred HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhh
Q 013655 199 YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKE 278 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (439)
++++|++.+...++ ...++.+..+.+ ++
T Consensus 339 ~f~fPk~lp~~~~~-------~~~~~~~~~k~~-------------------------~~-------------------- 366 (735)
T KOG3626|consen 339 LFFFPKELPKSQKR-------KRARDLHVLKTE-------------------------SG-------------------- 366 (735)
T ss_pred HHhCcccCcccccc-------chhhhhcccccc-------------------------cc--------------------
Confidence 88888764321111 000000000000 00
Q ss_pred ccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchh
Q 013655 279 MKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYG 358 (439)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 358 (439)
.+++.+..+++.++-...++.+++++.+ ....+...+....+.+...+.|.|.+. |.|.+...+..
T Consensus 367 --~~~~~~~~~~~ikdfp~s~~~ll~N~if---~~~~l~~~~~~~~~~G~~tFlPKyLE~---------Qfg~sas~An~ 432 (735)
T KOG3626|consen 367 --GAKSDKTFGKKIKDFPKSIKRLLSNPIF---MLVVLASVIESLAITGYITFLPKYLET---------QFGISASLANI 432 (735)
T ss_pred --cccCCcchhhhHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHhhHHHhhHHHHHH---------HcCCCHHHHHH
Confidence 0000001111223333466677776543 444555556666677777888888855 45566666644
Q ss_pred hH-HHHhhhhhhHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Q 013655 359 DV-FITSFAEFPGLLLAAAMVDRLG--RKLSMSSMFFCCCIFLV 399 (439)
Q Consensus 359 ~~-~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~ 399 (439)
+. .+..-+..+|.+++|+++.|+. .|.+.....+...+.++
T Consensus 433 l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~ 476 (735)
T KOG3626|consen 433 LTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL 476 (735)
T ss_pred HhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence 44 3444456789999999999874 45555444444444433
No 149
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.41 E-value=2.8e-14 Score=140.40 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655 35 GMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA 114 (439)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 114 (439)
++..+.+.+........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++++++.+++++=
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 33444456666666777889999999999999999999999999999999999999888888889999999888776530
Q ss_pred ----c----------------------------------------------hHHHHHHHHHHHhhccCcc-hhhHHHHhh
Q 013655 115 ----P----------------------------------------------NYYLLLFFRCLVGLGLGGG-PVLASWFLE 143 (439)
Q Consensus 115 ----~----------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~ 143 (439)
+ -+..++++.++.|+|.... +...+++-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 0 0245678889999999988 788899999
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------c-hhHHHHHhHHHHHHHHHHHhc
Q 013655 144 FIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL---------------------G-WRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 144 ~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~~ 201 (439)
..++++-+...|+......+|.++|..+++.+...+ | |-..|++.+++.++..+.++.
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999988765321 1 555566666666666666677
Q ss_pred ccCC
Q 013655 202 TPES 205 (439)
Q Consensus 202 ~~~~ 205 (439)
+|+.
T Consensus 249 FPk~ 252 (539)
T PF03137_consen 249 FPKK 252 (539)
T ss_dssp ----
T ss_pred CCcc
Confidence 7765
No 150
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.40 E-value=1.5e-11 Score=117.83 Aligned_cols=145 Identities=10% Similarity=-0.037 Sum_probs=119.8
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhc
Q 013655 51 VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLG 130 (439)
Q Consensus 51 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 130 (439)
..|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++..+.++++.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445567899999999999999999999999999999999999999999999888888888889999999999999999
Q ss_pred cCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 013655 131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 197 (439)
.+.. +....++.+. +++++++..+..+ ...++|..+||.++|.+.+.+|+ ..++..+++.+++++
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 8877 5566676675 6667788899876 55678889999999999999887 456655555554433
No 151
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.40 E-value=2.5e-10 Score=106.52 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=129.4
Q ss_pred HHHHHHHhhh-cCCCchhhH-HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 013655 49 SFVGPAVQSL-WHLSPNQES-LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126 (439)
Q Consensus 49 ~~~~~~~~~~-~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (439)
+++.|++.+. .|++..++. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++.+.+-+..++
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~ 103 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF 103 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 5566777776 889988874 35555566777788899999999999999999999999999999999999999999999
Q ss_pred HhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHhcccC
Q 013655 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--RLGWRWLLGLSAFPSSLLLLLYSVTPE 204 (439)
Q Consensus 127 ~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 204 (439)
.|++.+.-.+.++++-...|+++--++.+....+.-+|..++..++..+.. ..+++....+......++++..+++|.
T Consensus 104 yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 104 YGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999988877777898888899998999999888888888888888887765 334666666666666667777778887
Q ss_pred Cch
Q 013655 205 SPR 207 (439)
Q Consensus 205 ~~~ 207 (439)
.++
T Consensus 184 ~~~ 186 (412)
T PF01770_consen 184 PKR 186 (412)
T ss_pred CCc
Confidence 643
No 152
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.40 E-value=1.7e-11 Score=120.49 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=133.5
Q ss_pred HHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 50 FVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 50 ~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
..+|.+. +++|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+..++..++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3456665 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY 199 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 199 (439)
++.... ....+.+.+..|++.||++++++.+....+..+|..+.|.+.+.+|.+..+.+.++..++..++.
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 988877 56668888999999999999999999999999999999999999999999888777665555443
No 153
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.40 E-value=4.8e-11 Score=115.98 Aligned_cols=158 Identities=21% Similarity=0.259 Sum_probs=134.9
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh--HHHHHHHHHHHHHHHHHhh--------cchH
Q 013655 48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR--KGFLITAIVTSAAGLLSAF--------APNY 117 (439)
Q Consensus 48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~--------~~~~ 117 (439)
......+..+++|++..+...+..+..+..++|++++|++.||+|.| ++++.+.+++.+..+...+ ..+.
T Consensus 301 ~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~ 380 (477)
T PF11700_consen 301 ISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSP 380 (477)
T ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccH
Confidence 33444555678999999999999999999999999999999999999 8888888777554444444 5678
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHH
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLL 195 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~ 195 (439)
+.+.+.-++.|++.|.. +..-++.++..|+++.+..+|++....-..+.+||.+.+.+.+..| .|..+....++.++.
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g 460 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG 460 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 88999999999999999 6666999999999999999999999999999999999999998877 888888888888888
Q ss_pred HHHHhcccCC
Q 013655 196 LLLYSVTPES 205 (439)
Q Consensus 196 ~~~~~~~~~~ 205 (439)
+++++.++.+
T Consensus 461 l~ll~~v~~~ 470 (477)
T PF11700_consen 461 LILLFFVDVE 470 (477)
T ss_pred HHHHhhccch
Confidence 8777776554
No 154
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.39 E-value=2.8e-11 Score=118.55 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHH-HHHHHHHHHHHHHHhh--cchH
Q 013655 44 EMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGF-LITAIVTSAAGLLSAF--APNY 117 (439)
Q Consensus 44 ~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~~~~~~~~~~~~~~~--~~~~ 117 (439)
.......+.|.+. ++.|++..+.+++..++.++..++.+++|+++||+ |||+.. +....+..++.++..+ ..+.
T Consensus 268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (452)
T PRK11273 268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP 347 (452)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence 3334445556555 45799999999999999999999999999999999 555432 2222333333332222 2344
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHH-HHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTI-LEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
+...+..++.|.+.... .....+..|.+|+++||+++|+.+....+|+. ++|.+.+++.+..||+..|++.++.++++
T Consensus 348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~ 427 (452)
T PRK11273 348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 427 (452)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44445555555543332 33335567999999999999999988888765 47999999999999999999888777776
Q ss_pred HHHHh
Q 013655 196 LLLYS 200 (439)
Q Consensus 196 ~~~~~ 200 (439)
++...
T Consensus 428 ~~~~~ 432 (452)
T PRK11273 428 VILLI 432 (452)
T ss_pred HHHHH
Confidence 55543
No 155
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.39 E-value=1.5e-11 Score=116.80 Aligned_cols=131 Identities=21% Similarity=0.171 Sum_probs=115.7
Q ss_pred HHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHH
Q 013655 50 FVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN-YYLLLFFRCLV 127 (439)
Q Consensus 50 ~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 127 (439)
...|.+.++ +|.+..+.+++.....++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455666654 8999999999999999999999999999999999999998888888888777777764 88888889999
Q ss_pred hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
|++.+.. +...+++.|..|+++|+++.|+.+....+|..++|.+++++.+.+|
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9998888 6677889999999999999999999999999999999999987654
No 156
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.7e-11 Score=112.38 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chH
Q 013655 39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNY 117 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~ 117 (439)
+........++|+-|.+.+..|+|.+..+++..++.++..+|.+++|+++|| +.|+.+.....+.++..+.+.+. ++.
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~ 300 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP 300 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence 3333444566788899999999999999999999999999999999999999 99999888877777777766655 456
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 196 (439)
+..++..++.|+..+.. .......++ .-++.++.+.+++....++|..+|..++|.+.+++|+....++.++..+++.
T Consensus 301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~ 379 (394)
T COG2814 301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL 379 (394)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 66666777777776666 344455566 5568899999999999999999999999999999999999999999888877
Q ss_pred HHHhcc
Q 013655 197 LLYSVT 202 (439)
Q Consensus 197 ~~~~~~ 202 (439)
++.+..
T Consensus 380 ~~~~~~ 385 (394)
T COG2814 380 LLALLS 385 (394)
T ss_pred HHHHHH
Confidence 765543
No 157
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.38 E-value=5.2e-11 Score=117.74 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc--ch-H-HHH
Q 013655 45 MMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--PN-Y-YLL 120 (439)
Q Consensus 45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~-~-~~~ 120 (439)
.....++.|.+.++.|.+....++......+...++.++.|+++||+|||+.++.+.++.+++.+++... .+ . ...
T Consensus 287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 3344566788888899988888888888888999999999999999999999999999888887766532 11 1 122
Q ss_pred HHHHHHHhhccCc--chhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH------hhcccchhHHHHHhHHHH
Q 013655 121 LFFRCLVGLGLGG--GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL------VMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 121 ~~~~~l~G~~~g~--~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~------l~~~~g~~~~~~~~~~~~ 192 (439)
..+.++.+++.+. .+....++.|.+|+++|++++|+......+|..+++.+.+. +.+.++|+..|++.++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 446 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence 2233334443333 25667889999999999999999999999988888665554 345788888888877766
Q ss_pred HHHHHH-HhcccCC
Q 013655 193 SLLLLL-YSVTPES 205 (439)
Q Consensus 193 ~~~~~~-~~~~~~~ 205 (439)
+++.++ +++.||+
T Consensus 447 ~~~~~~~~~~~~e~ 460 (479)
T PRK10077 447 VLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHhccccC
Confidence 666554 3455665
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.38 E-value=2.6e-11 Score=120.37 Aligned_cols=170 Identities=16% Similarity=0.103 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHH------------HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESL------------ITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
.++...+..+....+.|.+.++.|.+....+. ...+..++..++.++.++++||+|||+.++.+..+.
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~ 375 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence 33333333344444567777788876543211 233445566678889999999999999998888777
Q ss_pred HHHHHHHhhcc----hHHHHHHHHHHHhh-ccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 013655 105 SAAGLLSAFAP----NYYLLLFFRCLVGL-GLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR- 178 (439)
Q Consensus 105 ~~~~~~~~~~~----~~~~~~~~~~l~G~-~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~- 178 (439)
+++..+..+.. +...+....+...+ +.+..+..+.+..|.+|++.|+++.|+.+....+|.+++|.+.+++.+.
T Consensus 376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 77665554421 11111111112222 2233355667789999999999999999999999999999999998873
Q ss_pred ---------cchhHHHHHhHHHHHHHHHHHhcccCCc
Q 013655 179 ---------LGWRWLLGLSAFPSSLLLLLYSVTPESP 206 (439)
Q Consensus 179 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (439)
.++...|++.+++.++..+..+++||++
T Consensus 456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 456 DPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 3456677777777776666667778873
No 159
>PRK10504 putative transporter; Provisional
Probab=99.37 E-value=3e-11 Score=119.09 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---
Q 013655 39 ISEAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--- 114 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--- 114 (439)
++..........+.|++.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.+++..+..+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (471)
T PRK10504 271 FAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL 350 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc
Confidence 3333444455556676665 589999999999999999999999999999999999999998888777776665543
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
++.+.+.+..++.|++.+.. +.......+..|++.+|.++++.+....+|..+|+.+.+.+.+..|+.
T Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 351 GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444455567778877776 666678888999999999999999999999999999999988766653
No 160
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.36 E-value=5.9e-11 Score=117.14 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=118.9
Q ss_pred HHHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH---Hhhc-chHHHHHHHH
Q 013655 50 FVGPAVQSLWHLSPNQESLITS-VVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL---SAFA-PNYYLLLFFR 124 (439)
Q Consensus 50 ~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~ 124 (439)
...|++.+++|+|..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+. .+.. ++.+.+.+..
T Consensus 244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3445566779999999999974 666899999999999999999998877666554544332 2233 3454444455
Q ss_pred HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhccc
Q 013655 125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (439)
++..++.|.. ....+...+..+++.+++..++.+...++|..+++++.|++.+..||+..|.+.+++++.+++....++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544544 455677888999999999999999999999999999999999999999999998888888777665554
Q ss_pred C
Q 013655 204 E 204 (439)
Q Consensus 204 ~ 204 (439)
+
T Consensus 404 ~ 404 (491)
T PRK11010 404 Q 404 (491)
T ss_pred h
Confidence 4
No 161
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.35 E-value=1e-10 Score=114.13 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chHHHHHHHH
Q 013655 47 LLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNYYLLLFFR 124 (439)
Q Consensus 47 ~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 124 (439)
......+++.+. ++ +....+++.++..++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..
T Consensus 240 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (437)
T TIGR00792 240 IKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLI 318 (437)
T ss_pred HHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 333344444443 34 56677888888899999999999999999999999999988888887776665 3566777777
Q ss_pred HHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 125 CLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 125 ~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
++.|++.+.. +...++++|..+ ++++|.+.|+.+....+|..+++.+.+++.+..||
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 319 ILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888988877 666677777754 56689999999999999999999999999887766
No 162
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.35 E-value=4.7e-11 Score=116.35 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHH-HH---HHHHHHHHH
Q 013655 36 MGWISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGF-LI---TAIVTSAAG 108 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~---~~~~~~~~~ 108 (439)
+..+...........+.|.+. +++|++..+.+...+.+.++..++.++.|+++||+ ++|+.. .. +..+..++.
T Consensus 250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK11663 250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence 333333333444444555555 67899999999999999999999999999999998 333222 22 112121121
Q ss_pred HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655 109 LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL 187 (439)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~ 187 (439)
.... ..+.....+..+..|++.... ........|.+|+++||+++|+.+....+|..++|.+.+++.+..||+..|++
T Consensus 330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~ 408 (434)
T PRK11663 330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVV 408 (434)
T ss_pred HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHH
Confidence 2222 223333334444455433222 23345567999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHh
Q 013655 188 SAFPSSLLLLLYS 200 (439)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (439)
.+++.++..+..+
T Consensus 409 ~~~~~~~~~~~~~ 421 (434)
T PRK11663 409 ISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777655443
No 163
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.34 E-value=6.9e-11 Score=113.58 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=110.8
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh------cchHHHHHHH
Q 013655 51 VGPAVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF------APNYYLLLFF 123 (439)
Q Consensus 51 ~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 123 (439)
+.+.+.++.|+++++.|++.....+ ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 3444556689999999999888764 66677899999999999999988777665333222211 2233344444
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~-~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 198 (439)
..+.+++.+.. +...+...+..++ +++|+.+++.+...++|..++|.++|++.+..||+..|...+++.+++.+.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 55556666666 5556666666665 889999999999999999999999999999999999998888776665443
No 164
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.9e-11 Score=112.16 Aligned_cols=172 Identities=20% Similarity=0.199 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHH-HHHHHHH
Q 013655 29 CVLAYAGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGF-LITAIVT 104 (439)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~~~~~~ 104 (439)
..+++++++.++....++.+.-+.|.+ .|..|+|..++++..+.+-++...|.+++|+++||+ |||..+ ++.+++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 356778888888888888888877754 577899999999999999999999999999999996 666554 4455555
Q ss_pred HHHHHHHhhcc--hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccc
Q 013655 105 SAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLG 180 (439)
Q Consensus 105 ~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g 180 (439)
.++.+..-+++ |+++..++.++.|+..-+. ........|..|++.-|++.|+.+.+..+ |...+....+++.|.+|
T Consensus 332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 55555655665 4588888889999886665 55556778999999999999999999999 88899999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHh
Q 013655 181 WRWLLGLSAFPSSLLLLLYS 200 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~ 200 (439)
|...|.+..+.++++.+++.
T Consensus 412 W~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 99999888877777655543
No 165
>TIGR00895 2A0115 benzoate transport.
Probab=99.34 E-value=5.6e-11 Score=114.26 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 013655 37 GWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
..+...........+.|++.+++|.+..+.++..+...++..++.++.|+++||+|||+.+....+....+.++....++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (398)
T TIGR00895 258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS 337 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344444455566677888899999999999999999999999999999999999995544444333333333333567
Q ss_pred HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655 117 YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV 175 (439)
Q Consensus 117 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l 175 (439)
.+..++..++.|++.+.. +...+++.|.+|+++||++.|+......+|..++|.++|++
T Consensus 338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 777788888999998887 77778999999999999999999999999999999999875
No 166
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.34 E-value=8.3e-11 Score=113.28 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=118.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhH
Q 013655 60 HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLA 138 (439)
Q Consensus 60 ~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~ 138 (439)
+.+....|.+.++..+...++.++.|++.||+|+|+.+.++.++.++...+....++.+.+++.+++.|++.... ....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677899999999999999999999999999999999999888888888778888888888899999887655 4445
Q ss_pred HHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655 139 SWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 139 ~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 198 (439)
.+..+..+++.++...+. .+....+|..+++.++|++.+..||+.+|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 667777888888887766 678899999999999999999999999999988887766554
No 167
>PRK15075 citrate-proton symporter; Provisional
Probab=99.34 E-value=1.2e-10 Score=113.48 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHhh-hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH-HH---hhcc
Q 013655 41 EAMEMMLLSFVGPAVQS-LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL-LS---AFAP 115 (439)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~---~~~~ 115 (439)
..........+.|.+.+ .+|.+..+.++......++..++.+++|+++||+|||++++.+.++.++... .. ...+
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444455555666554 5899999999999999999999999999999999999988776554432221 11 1223
Q ss_pred hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchh
Q 013655 116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQ-TFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
++....+..++.|++.+.. +....++.|.+|++.|+.+.++.. .+..+++.++|.+.+++.+..|++
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 4444444455556666655 455578899999999999999954 444556788999999999988864
No 168
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.33 E-value=1.1e-10 Score=107.99 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQS---LWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 109 (439)
+..+..++..........+.+.+.+ .+|+++.+.++..+.+..+..++.++.+++.||+|+||.+.++..+.+++.+
T Consensus 144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3444444444334344444454443 3699999999999999999999999999999999999998888887777776
Q ss_pred HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
+....++.... ...++.|++.+.. |...+...+..|++ .+.+.++. ....+|+.+.|++.|.+.|..|.+..+++.
T Consensus 224 l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 224 GAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 66555544333 3555788888887 77777777777653 45666775 566789999999999999999988888754
Q ss_pred HHH
Q 013655 189 AFP 191 (439)
Q Consensus 189 ~~~ 191 (439)
.++
T Consensus 301 ~~~ 303 (310)
T TIGR01272 301 VPC 303 (310)
T ss_pred HHH
Confidence 443
No 169
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.32 E-value=1.3e-10 Score=113.14 Aligned_cols=157 Identities=12% Similarity=-0.008 Sum_probs=100.7
Q ss_pred HHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh----hcchHHHH
Q 013655 46 MLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA----FAPNYYLL 120 (439)
Q Consensus 46 ~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~----~~~~~~~~ 120 (439)
+....+.|.+ .+++|.+..+.+...++..++..+++++.|+++||+|||+.+..+.++.++...... ..++....
T Consensus 260 ~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (432)
T PRK10406 260 YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA 339 (432)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3344455554 566899999999999988888899999999999999999988776554433332111 12233322
Q ss_pred HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHH
Q 013655 121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~ 197 (439)
+....+.+++.+.. .....+..|.+|++.|++++|+.+...++ ++...|.+.+++ +..| |...+++.++..++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL 418 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence 22222222333333 44557789999999999999997765443 344577777755 4445 55566666666666555
Q ss_pred HHhccc
Q 013655 198 LYSVTP 203 (439)
Q Consensus 198 ~~~~~~ 203 (439)
..++++
T Consensus 419 ~~~~l~ 424 (432)
T PRK10406 419 VSLMLH 424 (432)
T ss_pred HHHHhh
Confidence 544443
No 170
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.31 E-value=2.5e-10 Score=110.38 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=111.6
Q ss_pred HHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-----chHHHHHHH
Q 013655 50 FVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-----PNYYLLLFF 123 (439)
Q Consensus 50 ~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 123 (439)
...|.+ .+++|.++.+.++......++..++.++.|+++||+|+|+.+..+.++.+++.++..+. .+++.+.+.
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG 315 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 334444 56789999999998888888999999999999999999999988888777776665542 345666777
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
.++.|++.+.. +....... ..++++||+..+..+....+|..+|+.+.+.+.+..++....+..++..++.
T Consensus 316 ~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 88888888776 44444333 3345899999999999999999999999999988878766555544444444
No 171
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.1e-11 Score=119.22 Aligned_cols=175 Identities=17% Similarity=0.224 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHH
Q 013655 29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG--RRKGFLITAIVTSA 106 (439)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~ 106 (439)
..++...+...+...+......++|.+.++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++.++.++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 3456666777777888888888999999999999999999999999999999999999999987 45556778888888
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhccCcch-hhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHH
Q 013655 107 AGLLSAFAPNYYLLLFFRCLVGLGLGGGP-VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWL 184 (439)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~ 184 (439)
+.+..++.++++.+....++.|++.|... .....+.|..+.++-..+.|+...+.+++.++||++++++.|..| |...
T Consensus 378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~ 457 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA 457 (509)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence 88899999999999999999999999984 444678999999999999999999999999999999999999887 9999
Q ss_pred HHHhHHHHHHHHHHHhccc
Q 013655 185 LGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (439)
|+..++..+++.+.++..+
T Consensus 458 f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 458 FYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhhcChHHHHHHHHHHHhH
Confidence 9999999998887777665
No 172
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.7e-10 Score=109.08 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=137.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
..|+.....+.+....+..+.....++...+.++.|++..++.++.....+...+..+++.++.||+|||+.++.+..++
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34455455555555556666677777888889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcc----hH--HH---HHHHHH--HHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 105 SAAGLLSAFAP----NY--YL---LLFFRC--LVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 105 ~~~~~~~~~~~----~~--~~---~~~~~~--l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
.+..+++.... .. |. .+++.+ ...++.|..|..+-+.+|.+|++.|..++++......+..++-...-.
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877665431 11 11 223333 344455555777788999999999999999999999988888877777
Q ss_pred HhhcccchhHHHHHhHHHHHHH-HHHHhcccCCc
Q 013655 174 LVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESP 206 (439)
Q Consensus 174 ~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~ 206 (439)
.+.+..|- ..|+...+++++. +.++..+||++
T Consensus 426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 77777776 5566666555554 45578889983
No 173
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.29 E-value=6.5e-11 Score=116.57 Aligned_cols=149 Identities=12% Similarity=-0.035 Sum_probs=104.5
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchh-------HHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR-------KGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (439)
+++.+++|++..+.+.+.++..++..++.+++|+++||+||| ....+..++.++..++....++.+...+..+
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 356 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI 356 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 445677899999999999999999999999999999999875 2233333334444444555556655555555
Q ss_pred HHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhccc
Q 013655 126 LVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 126 l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (439)
+.+++.+.. ....+++.+. .++++|...|+.+.+..+|..+++.+.+ ..+..+|+..|++.+++.+++.++.++++
T Consensus 357 l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 357 LFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 666654443 3344444554 4578999999998888888877776654 22345699999999888888777666654
No 174
>PRK10054 putative transporter; Provisional
Probab=99.29 E-value=1.4e-10 Score=111.51 Aligned_cols=143 Identities=12% Similarity=-0.003 Sum_probs=116.6
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhccCcc-
Q 013655 57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNYYLLLFFRCLVGLGLGGG- 134 (439)
Q Consensus 57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~- 134 (439)
++.+.+....+++.....+.....+++.|++.||+++|+.+..+..+.+++..+..+. ++.+.+++..++.|+|.+..
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888888888999999999999999998888888887777664 56777777888999998776
Q ss_pred hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHh
Q 013655 135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYS 200 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 200 (439)
+.....+.+..|++.|+++.+..+ ...+|..+||.+++++.|+.|....|++.++...+..+..+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 666678889999999999998765 56689999999999999999998888887666655554433
No 175
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.28 E-value=4.1e-10 Score=108.66 Aligned_cols=147 Identities=13% Similarity=0.163 Sum_probs=103.4
Q ss_pred HHHHhhhcCCCchhhHHHHHHHH-HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH---hhc-chHHHHHHHHHH
Q 013655 52 GPAVQSLWHLSPNQESLITSVVF-AGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS---AFA-PNYYLLLFFRCL 126 (439)
Q Consensus 52 ~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l 126 (439)
.+.+.+++|+++.+.+++.+... ++..++.+++|++.||+|+|+.+..+..+.++..+.. ++. ++.+.+.+..++
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35567779999999999986654 5688999999999999999998877666655544332 343 455655555544
Q ss_pred ----HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 127 ----VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 127 ----~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
.|++.+.. .....++.+..|. +..++.+...++|..+++++++.+.+.+||+..|.+.++++++..++...
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 3334455555554 44566666667888777789999999999999999988888777666544
Q ss_pred c
Q 013655 202 T 202 (439)
Q Consensus 202 ~ 202 (439)
.
T Consensus 389 ~ 389 (402)
T PRK11902 389 M 389 (402)
T ss_pred H
Confidence 4
No 176
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.28 E-value=2.3e-10 Score=107.40 Aligned_cols=149 Identities=12% Similarity=0.087 Sum_probs=126.6
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-h
Q 013655 57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-P 135 (439)
Q Consensus 57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~ 135 (439)
++-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++..++++=..+++++++.+.+.+.+.+.|+-.+.. .
T Consensus 252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV 331 (412)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 333456677899999999999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred hhHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH-HhcccCC
Q 013655 136 VLASWFLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPES 205 (439)
Q Consensus 136 ~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 205 (439)
....++++.+|++..++...+ .+.+.++|..+.+.++|.+.|+.|.+..|++.+.+.+...++ .+.++++
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 777999999999988888888 578899999999999999999999999999888877766555 4555544
No 177
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.27 E-value=9.7e-11 Score=107.70 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc-
Q 013655 38 WISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP- 115 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~- 115 (439)
++..+-.....+..+| ++.++++.++.+.|.+...+.+...+..+.+|+++||+|.+|++......++++..+..+.+
T Consensus 227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~ 306 (417)
T COG2223 227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT 306 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence 3333333334444444 56688999999999999999999999999999999999999999998888888887776653
Q ss_pred ------hHHHH----HHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHH
Q 013655 116 ------NYYLL----LFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWL 184 (439)
Q Consensus 116 ------~~~~~----~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~ 184 (439)
+.... +...++.|+|.|. ...++..++|+ +-|.+.|+.....++|+..-|...+...+..| ++..
T Consensus 307 ~~~~~~~~~~~~~~~l~l~~~~G~GnGs---vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~ 382 (417)
T COG2223 307 GFGHGGSFVVFVAVFLALFVFAGLGNGS---VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA 382 (417)
T ss_pred ccccCcchHHHHHHHHHHHHHhccCcch---heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence 33333 3444555555554 44555555554 77899999999999999999999999888887 8889
Q ss_pred HHHhHHHHHHHHHHHhc
Q 013655 185 LGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (439)
|++.....+++.+....
T Consensus 383 f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 383 FMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888888877765443
No 178
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.27 E-value=7.7e-10 Score=106.32 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=114.5
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
.+..|.+.+++|++..+.+++.....++..++.++.|++.||.+++..+....+..+...++....++.+.+.+..++.|
T Consensus 237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34457777889999999999999999999999999999999965444344333334444445455667778888888999
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 196 (439)
++.+.. +...+++.+..| +++++..++.....++|..+|+.++|++.+..|++..+...++..++..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 998887 556677888776 5577888888888899999999999999999999988888776554443
No 179
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.26 E-value=2.5e-10 Score=100.32 Aligned_cols=176 Identities=18% Similarity=0.115 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 013655 27 QLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA 106 (439)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 106 (439)
||..+....+.....+ ..+..+.+.|.+.+.+|+|.++...+.....+|..+ +++.|.+.|++|++.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3555544444444444 445667888999999999999999999999999987 48899999999999999999999999
Q ss_pred HHHHHhhc-------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013655 107 AGLLSAFA-------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 178 (439)
Q Consensus 107 ~~~~~~~~-------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~ 178 (439)
+..+...+ +++|.+.+..++.|.+.+.. ........+.+| ++||.+.|+.-...++++.+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 88776543 35777877777777776655 444455567887 5799999999999999988877777666554
Q ss_pred cchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 179 LGWRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
-.-...++....+.++.++...+++..
T Consensus 158 ~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 158 DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 223333333334444444444555433
No 180
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.24 E-value=2.1e-10 Score=110.97 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHH-HHHHHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPAVQSLW--HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG-FLITAIVTSAAG 108 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-~~~~~~~~~~~~ 108 (439)
+...+.+++..........+.|.+.+++ +.+..+.+.+.....++..++.+++|+++||+++|+. +....++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence 3344445555555556667778777764 6688889999999999999999999999999997774 444444444443
Q ss_pred HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHH
Q 013655 109 LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLG 186 (439)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~ 186 (439)
.+....++....+++.++.+++.... +.......|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |+..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~ 404 (412)
T TIGR02332 325 LLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW 404 (412)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence 33222333222222222333333222 2233444677899999999999999999999999999999999875 999887
Q ss_pred HhHHHH
Q 013655 187 LSAFPS 192 (439)
Q Consensus 187 ~~~~~~ 192 (439)
+.++..
T Consensus 405 ~~~~~~ 410 (412)
T TIGR02332 405 FVAALL 410 (412)
T ss_pred HHHHHH
Confidence 766543
No 181
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.24 E-value=1.1e-09 Score=104.92 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=109.7
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHH
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-APNYYLLLFFRCLV 127 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 127 (439)
.+..|++.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.
T Consensus 220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK10091 220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFIC 299 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456666778999999999999999999999999999999999999998888887777655543 45555566666666
Q ss_pred hhccCcc-hhhHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHH
Q 013655 128 GLGLGGG-PVLAS-WFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR-LGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 128 G~~~g~~-~~~~~-~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~-~g~~~~~~~~~~~~~~~~~~ 198 (439)
+++.... ++... ...+..+++.++.. ..+....+|..+||.+++++.+. .+|+..+.+.++.+++....
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 6665444 33333 33444444445544 34667889999999999999985 68999998887766665444
No 182
>TIGR00898 2A0119 cation transport protein.
Probab=99.24 E-value=2.5e-10 Score=113.68 Aligned_cols=148 Identities=18% Similarity=0.102 Sum_probs=113.5
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHhhcc
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY--YLLLFFRCLVGLGL 131 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~ 131 (439)
...+.++.+.. +...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+..++.+++.
T Consensus 348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (505)
T TIGR00898 348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI 424 (505)
T ss_pred ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 33445555533 33345566777888999999999999999999999888888877776543 44555556666666
Q ss_pred Ccc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCCc
Q 013655 132 GGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESP 206 (439)
Q Consensus 132 g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (439)
+.. +....+..|.+|++.|+.++|+.+....+|.+++|.+.+ + +..++..++.+.++..+++.++.+++||+.
T Consensus 425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 555 666788899999999999999999999999999999988 3 345677788888887777777777888763
No 183
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.24 E-value=3.2e-10 Score=104.42 Aligned_cols=153 Identities=19% Similarity=0.179 Sum_probs=131.6
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG 132 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 132 (439)
.+-..++|++..+..++.....+..+++++++|++.||+|.|+++..+.++..+..+...+......+.++-++.|+..|
T Consensus 277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 34455899999999999999999999999999999999999999999999888887777776666677777889999999
Q ss_pred cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
.. ...-++..+..|+++-++.+|+++.....++.+||.+.+.+.+..| -|..+....++.++.+++++.+|++
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99 6666999999999999999999999999999999999999887655 6667777777777777777776654
No 184
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.23 E-value=2.3e-10 Score=110.08 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCch-hhHHHHHH----HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 36 MGWISEAMEMMLLSFVGPAVQSLWHLSPN-QESLITSV----VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~~~----~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
+-.+..++.........++..+..+.+.. ..+..... ..+...+.++..|.++||+|||..+....+...+..+.
T Consensus 29 l~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~ 108 (463)
T KOG2816|consen 29 LYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALC 108 (463)
T ss_pred HHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHH
Confidence 33344444443334444455544443322 22333333 36788889999999999999999999998888877777
Q ss_pred HhhcchHHHHHHHHHHHhhccCcc---hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655 111 SAFAPNYYLLLFFRCLVGLGLGGG---PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL 187 (439)
Q Consensus 111 ~~~~~~~~~~~~~~~l~G~~~g~~---~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~ 187 (439)
..+.. +|.++ +.|+..+.. ....+++++....++|....|+.+.....+..++|.+++.+.+..|.-.+|.+
T Consensus 109 ~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~i 183 (463)
T KOG2816|consen 109 LLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLI 183 (463)
T ss_pred HHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHH
Confidence 66655 43333 444443332 55668899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HhcccCCc
Q 013655 188 SAFPSSLLLLL-YSVTPESP 206 (439)
Q Consensus 188 ~~~~~~~~~~~-~~~~~~~~ 206 (439)
..+..++..+. .+++||+.
T Consensus 184 a~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 184 AAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 88888877665 56677764
No 185
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.22 E-value=3.5e-10 Score=110.37 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=107.0
Q ss_pred HHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH---HHHHHHHhh--cchHHHH
Q 013655 47 LLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT---SAAGLLSAF--APNYYLL 120 (439)
Q Consensus 47 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~---~~~~~~~~~--~~~~~~~ 120 (439)
....+.|.+. +..|.++.+.++...+..++..++.+++|+++||+++++....+..+. .++.+.... ..+.+..
T Consensus 269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T TIGR00712 269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD 348 (438)
T ss_pred HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3344555554 557999999999999999999999999999999996543222222221 122222222 2234444
Q ss_pred HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655 121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVG-TILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g-~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 198 (439)
.+..++.|++.... ........|.+|+++||+++|+.+....+| ..++|.+.+.+.+..||...+++..+..+++.+.
T Consensus 349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 428 (438)
T TIGR00712 349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 428 (438)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44445555543332 222345679999999999999998887776 4689999999999999999988877766665554
Q ss_pred -HhcccCC
Q 013655 199 -YSVTPES 205 (439)
Q Consensus 199 -~~~~~~~ 205 (439)
++..||+
T Consensus 429 ~~~~~~~~ 436 (438)
T TIGR00712 429 LIVVMIGE 436 (438)
T ss_pred HHHHHhhc
Confidence 4444554
No 186
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.20 E-value=2e-09 Score=103.15 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=98.8
Q ss_pred HHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHH
Q 013655 51 VGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-----PNYYLLLFFR 124 (439)
Q Consensus 51 ~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 124 (439)
..|. +.+++|.++.+.+++.+...++..+++++.|++.||+|+|+.+..+..+..++.++..+. ++.+.+.+..
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM 307 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3344 456789999999999999999999999999999999999999888877777666555442 2344555566
Q ss_pred HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 013655 125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGL 187 (439)
Q Consensus 125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~ 187 (439)
++.|++.+.. +.......|..| ++|+++.++.+.....++.+.+++.+.+.+..+|...+..
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence 7788887776 556667777765 6799999998877665444554555555554455544443
No 187
>PRK09848 glucuronide transporter; Provisional
Probab=99.19 E-value=2e-09 Score=105.48 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=103.9
Q ss_pred HHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Q 013655 47 LLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFF 123 (439)
Q Consensus 47 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 123 (439)
......|++. +.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+.+.
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 325 (448)
T PRK09848 246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA 325 (448)
T ss_pred HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 3344455444 45677666555555555677888999999999999999999999988888877776654 56777777
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAP-------NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~-------~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
.++.|+|.+.. +...+...|..|.+ ++|...|+.+....+|..+++.+.+.+.+..||
T Consensus 326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88889998887 66667777776543 469999999999999999999999988766554
No 188
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.19 E-value=6.8e-10 Score=106.94 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=113.8
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 50 FVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD-NFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 50 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.++.++++.+.+..++.|
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 308 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY 308 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566666665557788899888887777666666666665 466677777787788888877778888877777777888
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc---c-hhHHHHHhHHHHHHHHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL---G-WRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~---g-~~~~~~~~~~~~~~~~~~ 198 (439)
++.+.. +...+++.+..|+++||+++|+.+....+|..+||.+++++.+.. + ....+...++..++..+.
T Consensus 309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 887766 667788899999999999999999999999999999999998864 2 245555555555555443
No 189
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.19 E-value=1.6e-09 Score=103.44 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc-chH
Q 013655 40 SEAMEMMLLSFVGPAVQSLWH-LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA-PNY 117 (439)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~ 117 (439)
...........+.+.+.++.| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+..++=..+++.. ++.
T Consensus 218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~ 297 (400)
T PF03825_consen 218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 334444444445555667777 778888888888888888999999999999999999999999999888888877 454
Q ss_pred HHHHH----HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhcccchh------HHH
Q 013655 118 YLLLF----FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT-FWTVGTILEAGIAWLVMPRLGWR------WLL 185 (439)
Q Consensus 118 ~~~~~----~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~-~~~~g~~i~~~l~~~l~~~~g~~------~~~ 185 (439)
+...+ ...+.|+..+.. .....++.+..|++.|+++.++++. ..++|..+|..++|++.|.+|-+ ..+
T Consensus 298 ~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~ 377 (400)
T PF03825_consen 298 PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF 377 (400)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 44333 345689999988 7777999999999999999999765 57899999999999999987744 344
Q ss_pred HHhHHHHHHHHHH
Q 013655 186 GLSAFPSSLLLLL 198 (439)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (439)
.+.+++.++..++
T Consensus 378 ~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 378 LVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 4555544444443
No 190
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.18 E-value=1.9e-09 Score=102.37 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch---hHHHH-HHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR---RKGFL-ITAIVTSAA 107 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~---r~~~~-~~~~~~~~~ 107 (439)
+...+.+++.....+....+.|.+.++.|.+.. .+....+..+...++ .++++||..| |+... ...++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333344455555555556677877788888764 566666655555555 4677777654 33333 234444444
Q ss_pred HHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655 108 GLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186 (439)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~ 186 (439)
..+..+..+.+..++...+.|++.... +..+++.+|.+|++.||++.|+.+....+|+..+|++.+.+.. +.+..|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~ 348 (368)
T TIGR00903 271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT 348 (368)
T ss_pred HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 445555555545555556666666665 5667889999999999999999999999999999999888774 7777788
Q ss_pred HhHHHHHHHHHHHhcccC
Q 013655 187 LSAFPSSLLLLLYSVTPE 204 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~ 204 (439)
+.+++.++..+....+++
T Consensus 349 ~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 349 FLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 777777776665544454
No 191
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.18 E-value=1.6e-09 Score=104.13 Aligned_cols=161 Identities=12% Similarity=-0.046 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh-hc---
Q 013655 39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA-FA--- 114 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~--- 114 (439)
+..+......+...|++.++ ..+.........+..+...+..+++|+++||+|+|+++.++.++.+++..... ..
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~ 340 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT 340 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333445555655544 23333333334455678888999999999999999999988877666653322 22
Q ss_pred --chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCC---------------------CchhhHHHHHHHHHHHHHHHHHH
Q 013655 115 --PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPA---------------------PNRGFWMVIFQTFWTVGTILEAG 170 (439)
Q Consensus 115 --~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~---------------------~~rg~~~~~~~~~~~~g~~i~~~ 170 (439)
.+++.+.+..+...++.|.. .....++.+.+|+ ++-|.+.|+......+|+.+.|.
T Consensus 341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~ 420 (462)
T PRK15034 341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ 420 (462)
T ss_pred cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence 24566666555555555555 4566677777764 25678889999999999999998
Q ss_pred HHHHhhcccc-hhHHHHHhHHHHHHHHHHHh
Q 013655 171 IAWLVMPRLG-WRWLLGLSAFPSSLLLLLYS 200 (439)
Q Consensus 171 l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 200 (439)
+.+...+..| +...|+...+..+++.++.+
T Consensus 421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 8887776654 77788887777777766533
No 192
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.18 E-value=6.7e-10 Score=105.28 Aligned_cols=137 Identities=15% Similarity=0.043 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 013655 43 MEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSAFAPNYYLLL 121 (439)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (439)
........+.|.+.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++.+...
T Consensus 211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T TIGR00896 211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA 290 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3334444566777777899999999999999999999999999999999 566677777777777777666655433322
Q ss_pred HHHHHHhhccCcc-hhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 122 FFRCLVGLGLGGG-PVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 122 ~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
..++.|++.+.. +...+.+.+.. ++++++...++.+....+|..++|.+.+++.+..|
T Consensus 291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789988887 65556665444 45677899999999899999999999999988765
No 193
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.18 E-value=3.9e-10 Score=107.56 Aligned_cols=148 Identities=19% Similarity=0.131 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc-hhHHHH-HHH-HHHHHHHHHHhh
Q 013655 38 WISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG-RRKGFL-ITA-IVTSAAGLLSAF 113 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G-~r~~~~-~~~-~~~~~~~~~~~~ 113 (439)
.+...........+.|. +.+++|.+..+.+++.+...++..++.++.|++.||.+ +|+... ... ....++......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 33333333334444444 45678999999999999999999999999999999864 333222 221 222222222222
Q ss_pred --cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655 114 --APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185 (439)
Q Consensus 114 --~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~ 185 (439)
..+.+...+..++.|+..... +....+..|..|+++||++.|+.+....+|..++|.+.+.+.+.+||+..|
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 305 NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 234555556666777655444 455577889999999999999999999999999999999999999998653
No 194
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.17 E-value=1.4e-09 Score=119.13 Aligned_cols=142 Identities=18% Similarity=0.078 Sum_probs=118.1
Q ss_pred HHHHHHhhhcCCCch-hhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 50 FVGPAVQSLWHLSPN-QESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 50 ~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
.+.+++.+.+|.+.. ..+++.+...++.+++++++|++.||+++++.+.++.++.+++.++..+.++.+.++++.++.|
T Consensus 254 ~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (1146)
T PRK08633 254 NFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG 333 (1146)
T ss_pred hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455677899999 9999999999999999999999999999999988888888888888888888888888899999
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHhHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWLLGLSAFP 191 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g~~~~~~~~~~~ 191 (439)
++.+.. +...+++.+..|++.||+++|+.+....+|.++++.+++.+.. .+++...+++.+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 998887 6677888999999999999999999999999888887776643 23455555554443
No 195
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.16 E-value=6e-09 Score=102.68 Aligned_cols=139 Identities=11% Similarity=0.003 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-----cchH
Q 013655 43 MEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-----APNY 117 (439)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~~~ 117 (439)
........+.+++.+...-+....+++.+...++.+++.+++++++||+|+|+.+..+..+.+++.+...+ .++.
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA 324 (473)
T ss_pred HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence 33344444455565554445667777778777899999999999999999999998888776655544332 3456
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
+.+++..++.|++.+.. ....++++|..+ .++.|..+|......-+|..+++.+.+++.+..|+
T Consensus 325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66777778888888877 666678888754 44457788999999999999999999998876665
No 196
>PRK10133 L-fucose transporter; Provisional
Probab=99.13 E-value=2.8e-09 Score=103.72 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=110.6
Q ss_pred HHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcc
Q 013655 53 PAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGL 131 (439)
Q Consensus 53 ~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 131 (439)
+++ .+.+|.++.+.++....+.++..+++++.|++.||+|+|+++..+.++.+++.++..+.++.+ .+...++.|++.
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~ 361 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFM 361 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence 343 456899999999999999999999999999999999999999888877777766666665543 345667889999
Q ss_pred Ccc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHH
Q 013655 132 GGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLL 196 (439)
Q Consensus 132 g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~ 196 (439)
+.. |...+...+..++ +.+.+.++... ..+|+.++|++.+.+.+..| -+..|++..+..+...
T Consensus 362 ~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 362 SIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 988 7777888887765 46777787764 44688889999999999887 7777776555444433
No 197
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.13 E-value=2e-09 Score=117.66 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=112.7
Q ss_pred HHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---------------
Q 013655 51 VGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--------------- 114 (439)
Q Consensus 51 ~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------------- 114 (439)
+.| ++.+.+|.+..+.|++.+++.++.++++++.|+++|+.++++.+..+.++.+++.+...+.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 344 4456689999999999999999999999999999998887776666655555544433332
Q ss_pred -----chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHH
Q 013655 115 -----PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP-RLGWRWLLGL 187 (439)
Q Consensus 115 -----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~-~~g~~~~~~~ 187 (439)
++.+.+++..++.|++.+.. +...+++.+..|++.||+++|+.+....+|..+++++.+.+.+ ..++...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 66777888888999998888 6677899999999999999999999999999999999998874 4566666655
Q ss_pred hHHH
Q 013655 188 SAFP 191 (439)
Q Consensus 188 ~~~~ 191 (439)
.+++
T Consensus 407 ~~~~ 410 (1140)
T PRK06814 407 IALA 410 (1140)
T ss_pred HHHH
Confidence 5443
No 198
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.12 E-value=1.4e-09 Score=107.67 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh----c
Q 013655 40 SEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF----A 114 (439)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~ 114 (439)
...........+.|.+. +.+|.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++..+..+ .
T Consensus 266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 345 (485)
T TIGR00711 266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD 345 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 33333344445556554 558999999999999999999999999999999999999999998888888777662 2
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 178 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~ 178 (439)
.+++.+....++.|++.+.. ++......+..|+++||.+.|+.+....+|..+|+.+.+.+.++
T Consensus 346 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 346 TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788899998887 55666677888999999999999999999999999999988664
No 199
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.12 E-value=1.8e-09 Score=102.32 Aligned_cols=118 Identities=13% Similarity=0.144 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHHHHH-HHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---------
Q 013655 45 MMLLSFVGPAVQSLWHLSPNQESLITSVVF-AGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA--------- 114 (439)
Q Consensus 45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------- 114 (439)
........|.+.+++|.+..+.+.+..+.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (356)
T TIGR00901 225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGI 304 (356)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 334444555555669999999998887765 6778999999999999999999888888877766655442
Q ss_pred --chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHH
Q 013655 115 --PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWT 162 (439)
Q Consensus 115 --~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~ 162 (439)
++.+.+..+.++.+++.+.. +...+++.|.+|+++||+.+|+.+...+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 45677777888889998888 7778999999999999999999877654
No 200
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.11 E-value=4.9e-09 Score=100.83 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=91.8
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCc
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG 133 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 133 (439)
.+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.++..+.++.+..+....+.+.+.+.
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV 308 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999888888887777766555444444444444333
Q ss_pred c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
. +. ....+..|.++|+ |......+++..+++.+++++.+..|+.......+.+.
T Consensus 309 ~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 309 GFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3 22 2223344544443 33344455666777777777777777765444444433
No 201
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.11 E-value=5.9e-09 Score=100.20 Aligned_cols=144 Identities=15% Similarity=0.041 Sum_probs=112.3
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLG 132 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 132 (439)
+++.+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+. +.++..++..+.++++...+..++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 3455678999999999999999999999999999999999998887775 344545555666777777778888999988
Q ss_pred cc-hhhHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655 133 GG-PVLASWFLEFIPAPN-RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 198 (439)
.. ++..+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-+..+.+.++..++...+
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 87 556677777655554 79999999999999999999998855 5677777666655555544433
No 202
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.10 E-value=4.2e-09 Score=103.68 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHH--------HHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG--------FLITA 101 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~--------~~~~~ 101 (439)
++...+..+...........++|.+ .+.+|.+..+.++..++..++..++.+++|+++||+++|+. +..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444555555555555555566655 56689999999999999999999999999999999865421 11111
Q ss_pred HH--HHHHHHHHhh-cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 102 IV--TSAAGLLSAF-APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 102 ~~--~~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
.. .++..+.... ..+.+..+++..+.+.+.+.. +.......+..| +.+|.+.|+.+....+|+.++|.+.+++.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 11 1111212222 234444444555555555544 333344456655 489999999999999999999999999876
Q ss_pred cc---chhHHHHHhHHHHHHHHHHHhccc
Q 013655 178 RL---GWRWLLGLSAFPSSLLLLLYSVTP 203 (439)
Q Consensus 178 ~~---g~~~~~~~~~~~~~~~~~~~~~~~ 203 (439)
.. +|+..|.+.++..++..+.....+
T Consensus 422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 422 QDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 43 488889888888777766655543
No 203
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.10 E-value=2e-07 Score=93.96 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=123.5
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHHhhcch--------HHH
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGLLSAFAPN--------YYL 119 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~--------~~~ 119 (439)
..+..++.+.+|.+.+.+..+...+.....+..+++|+++|+ +|+++.+.++.++..++..+.++... ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 334455667789999999999999988888999999999997 69999999999999988887776421 234
Q ss_pred HHHHHHHHhhccCcc-hhhHHHHhhhcCCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhccc-------chhHHHHHh
Q 013655 120 LLFFRCLVGLGLGGG-PVLASWFLEFIPAP---NRGFWMVIFQTFWTVGTILEAGIAWLVMPRL-------GWRWLLGLS 188 (439)
Q Consensus 120 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~-------g~~~~~~~~ 188 (439)
.+++..+..+|.|++ +...+...+.++++ +|-..+.++..+.++|+++++++.+++.+.+ +|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 567778888899999 88889999888754 3677888889999999999999999987443 699999998
Q ss_pred HHHHHHHHHHHhc
Q 013655 189 AFPSSLLLLLYSV 201 (439)
Q Consensus 189 ~~~~~~~~~~~~~ 201 (439)
++..++++++...
T Consensus 168 ~i~m~ia~lvf~~ 180 (654)
T TIGR00926 168 AILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665443
No 204
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.10 E-value=2.6e-09 Score=103.34 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=118.1
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc---c--hhHHHHHHHHHHHHHHHHHhhcc----hHH
Q 013655 48 LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF---G--RRKGFLITAIVTSAAGLLSAFAP----NYY 118 (439)
Q Consensus 48 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~---G--~r~~~~~~~~~~~~~~~~~~~~~----~~~ 118 (439)
.....|++.+++|+++++...+.+...+...+ .++.|.++|-+ | ||+-++++.++.+++.+..+..+ +..
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 34556788999999999999998888887755 68899999986 3 55556677777665555555433 456
Q ss_pred HHHHHHHHHhhccCcc-hhhHHHHhhhcC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 119 LLLFFRCLVGLGLGGG-PVLASWFLEFIP--APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
...++.++..+|.... .+.-+.+.|... ++.||...+.......+|++++..++|.+.+..+++..|.+.+++.++.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 6666777788888877 566678877763 3337888889999999999999999999999999999998887776666
Q ss_pred HHHHhcccC
Q 013655 196 LLLYSVTPE 204 (439)
Q Consensus 196 ~~~~~~~~~ 204 (439)
.+..+++.|
T Consensus 168 ~~~~~~~~~ 176 (433)
T PF03092_consen 168 LIVALFLLE 176 (433)
T ss_pred HHHHHHhhh
Confidence 555444433
No 205
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.08 E-value=3e-09 Score=105.49 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=109.5
Q ss_pred HHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh---cchHHHHHH
Q 013655 47 LLSFVGP-AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF---APNYYLLLF 122 (439)
Q Consensus 47 ~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 122 (439)
...++.| ++++.+|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.++..+ .++.+...+
T Consensus 277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (495)
T PRK14995 277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWG 356 (495)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 3334444 455668999999999999999999999999999999999999998888888777665543 245666677
Q ss_pred HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
..++.|++.|.. +.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999987 6666777888999999999999999999999999999998754
No 206
>PRK09669 putative symporter YagG; Provisional
Probab=99.07 E-value=2.1e-08 Score=98.16 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=96.5
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHh
Q 013655 51 VGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF--APNYYLLLFFRCLVG 128 (439)
Q Consensus 51 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G 128 (439)
..+++.+..--++...+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|
T Consensus 251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 330 (444)
T PRK09669 251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN 330 (444)
T ss_pred hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 334444433223444455666677888889999999999999999998887766544433222 346777788888999
Q ss_pred hccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 129 LGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
++.+.. +...++++|..+ .++.|..+|....+..+|..+++.+++++.+..|+
T Consensus 331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999888 667788887775 34457788999999999999999999998887766
No 207
>PRK11043 putative transporter; Provisional
Probab=99.05 E-value=3.6e-08 Score=95.11 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=99.1
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH---Hhh--cchHHHHHHH
Q 013655 49 SFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL---SAF--APNYYLLLFF 123 (439)
Q Consensus 49 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 123 (439)
....|.+.+++|.+..+.|+......++..++.+..+++.||+|+|+.........+++.+. ... .++.+..++.
T Consensus 223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34456677788999999999888888999999999999999999998765554444443322 222 3455555666
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~ 184 (439)
..+.|++.+.. +.......+..| +++|++.|+.+.....+...++.+.+.+.+.......
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHH
Confidence 67778877776 555566666665 5799999999998888888999999988775444433
No 208
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.05 E-value=7.2e-09 Score=100.85 Aligned_cols=143 Identities=21% Similarity=0.376 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc-
Q 013655 38 WISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP- 115 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~- 115 (439)
.++............+++.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence 344444444445455555555 4444 6778888899999999999999999999999999999999999999888876
Q ss_pred -hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 116 -NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 116 -~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
+.+.+++..++.|++.+.. ....++++|..+ +++.|..+|+.+....+|..+++.+.+.+.+..|+
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8999999999999999988 666688887775 34568899999999999999999999988766554
No 209
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.03 E-value=3.8e-08 Score=94.10 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=82.9
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH---hh-cchHHHHHHHHHHHhh
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS---AF-APNYYLLLFFRCLVGL 129 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~G~ 129 (439)
.+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+.. .. ..+++...++..+.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999999999999888776544332222 22 2244444444444444
Q ss_pred ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHH-HHHHHHHHHHHHHH
Q 013655 130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTF-WTVGTILEAGIAWL 174 (439)
Q Consensus 130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~-~~~g~~i~~~l~~~ 174 (439)
+.+.. ......+.|..| +.+|++.++.+.. ..+|..+++.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 334455666655 7899999986554 55677777766543
No 210
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.03 E-value=6e-09 Score=90.49 Aligned_cols=147 Identities=16% Similarity=0.073 Sum_probs=111.9
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH-HHHHHHhhcchHHHHHHHHHHHhhccC
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS-AAGLLSAFAPNYYLLLFFRCLVGLGLG 132 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~g 132 (439)
.+.+.+|+|+...+-+.+......++.+++.|.++||+|++...+.+..+.. ++-....+ +.+.=.....+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 4678899999999999999999999999999999999999987776554433 33333333 23333456677888877
Q ss_pred cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhH-HHHHhHHHHHHHHHHHhcc
Q 013655 133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG---WRW-LLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g---~~~-~~~~~~~~~~~~~~~~~~~ 202 (439)
.. ...++.++...|+++.|++.|..+...++|-.+.|.+++.+.+.-| |-- .|+..+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 77 4577889999999999999999999999999999999999988655 333 3444555555555555544
No 211
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.00 E-value=5.7e-09 Score=98.55 Aligned_cols=129 Identities=27% Similarity=0.386 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHH-hhhcCCC-chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---c
Q 013655 41 EAMEMMLLSFVGPAV-QSLWHLS-PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA---P 115 (439)
Q Consensus 41 ~~~~~~~~~~~~~~~-~~~~~~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~ 115 (439)
............|.+ .+++|.+ ..+.+.+.+...+...++.++.|++.||+|+|+..........++.+...+. +
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
T PF07690_consen 218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSS 297 (352)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHC
T ss_pred HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444456666665 7889999 7999999999999999999999999999998887777776666666655544 3
Q ss_pred hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Q 013655 116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEA 169 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~ 169 (439)
+....++..++.|++.+.. +....++.+..|+++||++.|+.+...++|..++|
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4567777888899988887 77779999999999999999999999999999987
No 212
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.99 E-value=5.5e-09 Score=94.10 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHH----HHHHHHHHHhhccCcchhhHHHHhhhcCCC
Q 013655 73 VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYY----LLLFFRCLVGLGLGGGPVLASWFLEFIPAP 148 (439)
Q Consensus 73 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~ 148 (439)
..+.-.-|.++.+++.||+|||+.+..+.++++++.++...+.+.. ++..+|++.. |+..+.+.+..|.+|..
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis---g~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS---GAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh---chheEEEEecCcccchh
Confidence 3445567889999999999999999999999999988877764432 2334554332 33356778889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 149 NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 149 ~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
.|+.+.|.......+|+++.|.++ +.....-..+..+.+.+++++.+...++|-.
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 999999999999999999999999 3333344455666666677776666666643
No 213
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.93 E-value=5.9e-09 Score=89.74 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchH
Q 013655 38 WISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNY 117 (439)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~ 117 (439)
+.....+.+...+++-++.+.++....++|.+.....-...+.+.+.|.++|+-|||+.-+.-++...+++ +.-.+++|
T Consensus 46 yslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqY 124 (454)
T KOG4332|consen 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQY 124 (454)
T ss_pred HHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCce
Confidence 33444455667777778888999999999999988888888999999999999999997655444444433 33457889
Q ss_pred HHHHHHHHHHhhccCcc-hhhHHH-HhhhcCCCc-----hhhHHHH-HHHHHHHHHHHHHHHHHHhhcccc--hhHHHHH
Q 013655 118 YLLLFFRCLVGLGLGGG-PVLASW-FLEFIPAPN-----RGFWMVI-FQTFWTVGTILEAGIAWLVMPRLG--WRWLLGL 187 (439)
Q Consensus 118 ~~~~~~~~l~G~~~g~~-~~~~~~-~~~~~~~~~-----rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~ 187 (439)
-+++++|++.|+..+.. ...-++ +.|...++. ...-++- ...++++-.+++.+.+..+.+.++ --.+|-.
T Consensus 125 kVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdA 204 (454)
T KOG4332|consen 125 KVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDA 204 (454)
T ss_pred EEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHH
Confidence 99999999999998887 444454 466553221 1111222 224445555566666666666554 3344544
Q ss_pred hHH
Q 013655 188 SAF 190 (439)
Q Consensus 188 ~~~ 190 (439)
.+.
T Consensus 205 Aac 207 (454)
T KOG4332|consen 205 AAC 207 (454)
T ss_pred HHH
Confidence 433
No 214
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.4e-07 Score=85.46 Aligned_cols=169 Identities=17% Similarity=0.107 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~ 109 (439)
.+.+.+.+-++.+..+....++|.+..|.|+|..+.|++.+...+.....++....+++|. .+|+..+...+++.++.+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4444455566667777888889999999999999999999999999999999999999975 467777777777888888
Q ss_pred HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHH
Q 013655 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLG 186 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~ 186 (439)
.+.+.+.-..+.- .++.|+|.|.. +.....+....+ +++-++..|+.+....+=..+||.+.|++.|..| |+..++
T Consensus 290 G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~ 368 (395)
T COG2807 290 GLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV 368 (395)
T ss_pred HHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence 7777764332222 48999999988 777777766554 4556777788888888888899999999998765 998888
Q ss_pred HhHHHHHHHHHHHh
Q 013655 187 LSAFPSSLLLLLYS 200 (439)
Q Consensus 187 ~~~~~~~~~~~~~~ 200 (439)
......+...+.-+
T Consensus 369 ~l~~~~i~m~i~Gl 382 (395)
T COG2807 369 LLALATLLMLIFGL 382 (395)
T ss_pred HHHHHHHHHHHHHh
Confidence 87777666655433
No 215
>PRK11462 putative transporter; Provisional
Probab=98.92 E-value=4.5e-07 Score=88.94 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhccCcc-hhhH
Q 013655 62 SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP--NYYLLLFFRCLVGLGLGGG-PVLA 138 (439)
Q Consensus 62 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~ 138 (439)
++...+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+ +.+.+++..++.|++.+.. +...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888999999999999999999887755554444333333332 2333444556677776655 4445
Q ss_pred HHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 139 SWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 139 ~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
++++|..+ .++.|..++.......+|..+++.+++++.+..|+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66666554 34446666777788999999999999888765554
No 216
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.90 E-value=2.1e-07 Score=88.58 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 013655 37 GWISEAMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP 115 (439)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 115 (439)
..++........+....++. -.+|.+.....+.......+..++.+++.++++|+|+|+++.++.++.+++.++..+.+
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444455555555554 34677777888888888888888899999999999999999999999999999888876
Q ss_pred --hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 013655 116 --NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIP-------APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 116 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
+.+.+++..++.+++.+.. +..+++++|..+ .++-|...|....+.-+|..++..+.++..+..|+
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6788888889999998888 666677765542 34558888889999999999999999988776653
No 217
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.88 E-value=9.6e-08 Score=92.21 Aligned_cols=140 Identities=10% Similarity=-0.043 Sum_probs=101.2
Q ss_pred HHHHHhhhc--CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 51 VGPAVQSLW--HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 51 ~~~~~~~~~--~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
+++.+.++. +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++..++..+.++... ....++.|
T Consensus 254 ~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~g 332 (410)
T TIGR00885 254 FIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCS 332 (410)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 344443443 444455565667777888999999999999999999998888888888888888776544 45556667
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------chhHHHHHhHHHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL------GWRWLLGLSAFPSS 193 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~------g~~~~~~~~~~~~~ 193 (439)
++.+.. |...+...+..+++.+....++... .+|+.+.|++.|++.|.. +.+..|++..++.+
T Consensus 333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 776666 8788888888887665444444443 399999999999999954 46777776544433
No 218
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.87 E-value=3.9e-07 Score=87.69 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=93.7
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH-HHHHHHhh--cchHHHHHHHHHHHhhc
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS-AAGLLSAF--APNYYLLLFFRCLVGLG 130 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~G~~ 130 (439)
.+.+.+|.++.+.+++.....++..+++++.+++.||++++........+.+ +....... ..+.+.+.+..++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445589999999999999999999999999999999984433322222222 22222222 23566677778888888
Q ss_pred cCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655 131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
.+.. +...+...+..| +++|.+.++.+....+|..+++.+++.+.....+.
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 364 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS 364 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 8877 777777788776 57899999999999999999999999876654333
No 219
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.84 E-value=2.6e-07 Score=90.87 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----hhhh-cchhHH--HHHHHHHHHHHHHHHhh---------cchHHHHHHHHHHHhh
Q 013655 66 ESLITSVVFAGMLVGAYSWGI----VSDN-FGRRKG--FLITAIVTSAAGLLSAF---------APNYYLLLFFRCLVGL 129 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~g~----l~dr-~G~r~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~ 129 (439)
.+++.+...+...+.+++..+ +.+| .+++.. +.+|.++.+++....++ ..+++.+++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 678888888888888888665 4443 223333 37788888888777664 3588999999999999
Q ss_pred ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHh
Q 013655 130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYS 200 (439)
Q Consensus 130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 200 (439)
|.... +...+++.+..|++.||+++|++.....+|..+++.+.....+..+|...|...++..++..++.+
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA 465 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 99998 888899999999999999999999999999999999998877777888888877776666555443
No 220
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.83 E-value=6e-06 Score=79.78 Aligned_cols=142 Identities=10% Similarity=0.020 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CchhhHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHL-----SPNQESLITSVVFAGMLVG-AYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
++...+.+++..+.++. +-.+.|.+.+ +...+.++-+...+...+. .++.+++++|++|++++-......
T Consensus 9 ~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F 84 (472)
T TIGR00769 9 FLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF 84 (472)
T ss_pred HHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence 44444444544444433 3456676655 3357788888887777776 899999999999999887766666
Q ss_pred HHHHHHHhhc--c-----------------------------hHHHHHHHHHHHhhccCcc-h-hhHHHHhhhcCCCchh
Q 013655 105 SAAGLLSAFA--P-----------------------------NYYLLLFFRCLVGLGLGGG-P-VLASWFLEFIPAPNRG 151 (439)
Q Consensus 105 ~~~~~~~~~~--~-----------------------------~~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~~~~~~rg 151 (439)
....+++++. | +.|...+..+...+..... . ..++..+|.+..++-.
T Consensus 85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak 164 (472)
T TIGR00769 85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK 164 (472)
T ss_pred HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6555554432 1 1233333444444433334 3 5568899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 013655 152 FWMVIFQTFWTVGTILEAGIAWLVM 176 (439)
Q Consensus 152 ~~~~~~~~~~~~g~~i~~~l~~~l~ 176 (439)
|..++...+.++|.++++.+..++.
T Consensus 165 Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 165 RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876
No 221
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.80 E-value=1.6e-08 Score=93.84 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHHHH-HHHHHHHHHHHHHhh
Q 013655 39 ISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKGFL-ITAIVTSAAGLLSAF 113 (439)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~-~~~~~~~~~~~~~~~ 113 (439)
+..-+.+..-..+.+++..+.|++....+.+....-+...+.+|+.|..+|| +||||.++ .+.++.+++.++..+
T Consensus 42 ~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~ 121 (498)
T KOG0637|consen 42 AGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY 121 (498)
T ss_pred HHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh
Confidence 3333444444555666777899999999999999999999999999999995 89877655 556667777777777
Q ss_pred cchHH-----------------HHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhh-HHHHHHHHHHHHHHHHHHHHHH
Q 013655 114 APNYY-----------------LLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGF-WMVIFQTFWTVGTILEAGIAWL 174 (439)
Q Consensus 114 ~~~~~-----------------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~-~~~~~~~~~~~g~~i~~~l~~~ 174 (439)
+.++. .++++..+.-++.-.. .++-+++.|....+++.+ +++.+..+.++|+.+|..++++
T Consensus 122 aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 122 AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 65432 2333333444445455 667788999887766666 9999999999999998888774
No 222
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.80 E-value=4.1e-07 Score=83.66 Aligned_cols=150 Identities=33% Similarity=0.465 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcch--HH
Q 013655 43 MEMMLLSFVGPAVQSLWHLSP--NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN--YY 118 (439)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~ 118 (439)
..........+.+..+++.+. ...++..+...++..++.++.|.+.||+|||+.+..+......+.+...+..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 445555566677777777666 58899999999999999999999999999998888887765555566666655 88
Q ss_pred HHHHHHHHHhhccCcc-hhhHHHHhhhcCC-CchhhHHHHHHH-HHHHHHHHHHHHHHHhhcc--cchhHHHHHhHHHH
Q 013655 119 LLLFFRCLVGLGLGGG-PVLASWFLEFIPA-PNRGFWMVIFQT-FWTVGTILEAGIAWLVMPR--LGWRWLLGLSAFPS 192 (439)
Q Consensus 119 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-~~rg~~~~~~~~-~~~~g~~i~~~l~~~l~~~--~g~~~~~~~~~~~~ 192 (439)
.+++.|++.|++.+.. +...+++.+..|+ ++|+...+.... ...+|..+++.+++.+... .+|+..+.......
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999877 7777899999888 678999998888 5888888888777766553 57888555554444
No 223
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.76 E-value=4.2e-08 Score=92.88 Aligned_cols=162 Identities=14% Similarity=0.063 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655 41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL 120 (439)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
.+........++-.-.++++-.+...|........+-++.-++.+++.+|+|+-+++.+++....+=.+..++..|.|+.
T Consensus 383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~v 462 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMV 462 (618)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhe
Confidence 33334344444444568888888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 013655 121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 198 (439)
+..-+++|+..+.. ....+++....|++.|..+.++. ....++|-.+|.+|+|.+.+.+|-+..|.+.++.+++.++.
T Consensus 463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999 77779999999999999999995 46678899999999999999999999999998888877666
Q ss_pred Hhcc
Q 013655 199 YSVT 202 (439)
Q Consensus 199 ~~~~ 202 (439)
...+
T Consensus 543 ~~~i 546 (618)
T KOG3762|consen 543 FISI 546 (618)
T ss_pred HHHh
Confidence 5444
No 224
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.9e-07 Score=90.56 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch---------hHHHHH
Q 013655 30 VLAYAGMGWISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR---------RKGFLI 99 (439)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~---------r~~~~~ 99 (439)
.++.+++..+........+..+.|.+ .+.+|++..+.|++.++..+...+..+++|.++||.-+ |..-.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 45566677777777777777777755 46689999999999999999999999999999998754 222345
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHhhccCcchhhHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013655 100 TAIVTSAAGLLSAFAPN--YYLLLFFRCLVGLGLGGGPVLASWFLEFI-PAPNRGFWMVIFQTFWTVGTILEAGIAWLVM 176 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~ 176 (439)
+....+++.+..++.++ .+..+++. ..+.+..+......+....- .+++-+..+|+.+....+.+.++|.+.+.+.
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l-~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILL-TIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHH-HHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 66666666666676653 21222222 22222222211111222222 5678899999999999999999999999998
Q ss_pred cc---cchhHHHHHhHHHHHHHHHHHhcc
Q 013655 177 PR---LGWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 177 ~~---~g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
+. -.|+.+|++.+++.++..+.+.+.
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 42 369999999999988887665554
No 225
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.75 E-value=5.3e-08 Score=95.57 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=117.5
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc----------chHHHHHHHHHH
Q 013655 57 SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA----------PNYYLLLFFRCL 126 (439)
Q Consensus 57 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l 126 (439)
+.+|.++.+.|++.....++.+++....+++.+|++.|+++.++.++.+++.+...+. ++.+.+....++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 5689999999999999999999999999999999999999999999888877554311 333445555677
Q ss_pred HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-----hhHHHHHhH---HHHHHHHH
Q 013655 127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-----WRWLLGLSA---FPSSLLLL 197 (439)
Q Consensus 127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-----~~~~~~~~~---~~~~~~~~ 197 (439)
.+++.+.. .+...++.+..|++.+|+..++.+...++|..+++.+++.+.+..| ++..+.... ++.++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 78887777 6667889999999999999999999999999999999999988777 555444333 33333444
Q ss_pred HHhcccC
Q 013655 198 LYSVTPE 204 (439)
Q Consensus 198 ~~~~~~~ 204 (439)
...++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4456775
No 226
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.2e-06 Score=80.63 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC
Q 013655 70 TSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP 148 (439)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~ 148 (439)
.++.+....+++++++.+.|+.|+|+.+.++........+.+.+. |-+.+++...+.|+|.+.. ..-..+++|...++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677788888999999999999999999999998888777666554 5667888899999999988 44558999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655 149 NRGFWMVIFQTFWTVGTILEAGIAWLV 175 (439)
Q Consensus 149 ~rg~~~~~~~~~~~~g~~i~~~l~~~l 175 (439)
.+.+..++.-.....+.++|..+...+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 999999998888888888876665443
No 227
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.74 E-value=3.2e-07 Score=84.38 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655 41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL 120 (439)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
.+......+.+..++.+..|.+..+.+...+.+..+.++|.+++.++..|+...|.+.+..+...+.++...+.++.+.+
T Consensus 249 VG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~ 328 (422)
T COG0738 249 VGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL 328 (422)
T ss_pred HhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 34444444444444555589999999999999999999999999999999999999998888888888888888885444
Q ss_pred HHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655 121 LFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 196 (439)
.+.++.|+..+.. |...+...+..| ++ ....|..-....+|+++.|++.|++.|..|-...+.....++.+.+
T Consensus 329 -~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 329 -YALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4455778888877 888888888888 33 3444555566678999999999999999998887775555555444
No 228
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.71 E-value=2.6e-06 Score=79.10 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=119.5
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHh
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD-NFGRRKGFLITAIVTSAAGLLSAF---APNYYLLLFFRCLVG 128 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G 128 (439)
|+=.+.+|+|..+...+......|..++....|++.. |.++++...+++.+.+++..+..+ ..+.+.+....++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4445779999999999999999999999999999888 678888888888888777766544 467889999999999
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc----------cchhHHHHHhHHHHHHHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR----------LGWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~----------~g~~~~~~~~~~~~~~~~~ 197 (439)
++.|.. ....+.+.+...+++.|..+|.+.....++..++..+++.+.|. .+|..+|.+-++..+++++
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999 45558888999999999999999999999998988888877552 2466667766666666555
Q ss_pred HH
Q 013655 198 LY 199 (439)
Q Consensus 198 ~~ 199 (439)
+.
T Consensus 393 ll 394 (403)
T PF03209_consen 393 LL 394 (403)
T ss_pred HH
Confidence 44
No 229
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.70 E-value=1.1e-05 Score=77.11 Aligned_cols=343 Identities=14% Similarity=0.037 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH----H
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSLW-HLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA----A 107 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~----~ 107 (439)
.+....++...+.-++.+..+.+..+. .-+---.+...-.-.+..++.++..|.+.||..|.+++-.+.+..-+ +
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 445566666666667777767666554 22444444555555667778889999999999998887665543222 2
Q ss_pred HHHHh--hc--c----hHHHH---HHHHHHHhhccCcchhhH------HHHhhhc--CCCchhhHHHHHHHHHHHHHHHH
Q 013655 108 GLLSA--FA--P----NYYLL---LFFRCLVGLGLGGGPVLA------SWFLEFI--PAPNRGFWMVIFQTFWTVGTILE 168 (439)
Q Consensus 108 ~~~~~--~~--~----~~~~~---~~~~~l~G~~~g~~~~~~------~~~~~~~--~~~~rg~~~~~~~~~~~~g~~i~ 168 (439)
+.+.. +. + +.+.. ++...+.|.-.-...... -++.... +++...+..+...-.=-+.-+++
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla 165 (432)
T PF06963_consen 86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA 165 (432)
T ss_pred HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 21111 11 1 11222 222222222111111111 1222222 33444555555555555678899
Q ss_pred HHHHHHhhcccchhHHHHHhHHHHHHHHHH-Hhccc----CCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchh
Q 013655 169 AGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTP----ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWE 243 (439)
Q Consensus 169 ~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|.+.|.+.+..+.+....+.++..+++.++ ++++. ..|. ...+++.++ .
T Consensus 166 Pl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~----------------~--------- 219 (432)
T PF06963_consen 166 PLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSE----------------S--------- 219 (432)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcc----------------c---------
Confidence 999999999889888888777777776654 33321 1110 000000000 0
Q ss_pred hhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 013655 244 HELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAF 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 323 (439)
+. + +++. +.+ ++.+.....+..++..+.-...|+..++.+.+...+...++++. .+
T Consensus 220 -~~-~---------~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VL 275 (432)
T PF06963_consen 220 -ES-S---------SDEE------SSS------ESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VL 275 (432)
T ss_pred -cc-c---------cccc------ccc------cccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-Hh
Confidence 00 0 0000 000 00000000000011111112256666665555555555555553 22
Q ss_pred hhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HH
Q 013655 324 SYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIF----LV 399 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~----~~ 399 (439)
++-+ ....|.. ..|.+....+..-.+..+.++.|.++..++.+|+|..+.-..+......+ ..
T Consensus 276 sf~~---lmt~yl~----------~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~ 342 (432)
T PF06963_consen 276 SFGG---LMTAYLK----------SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV 342 (432)
T ss_pred cCcH---HHHHHHH----------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 2211 1223332 24577777788889999999999999999999999877766665543332 22
Q ss_pred HHhhcccc------chhhhHHHHHHhhhhheeeeeeeeccccccC
Q 013655 400 PLLFQQPK------GLTTGLLFGARICITVTFTVVYVYAPEVSHR 438 (439)
Q Consensus 400 ~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~ 438 (439)
.++...+. ..++....+..+|.-+.--....+++|..|+
T Consensus 343 ~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~ 387 (432)
T PF06963_consen 343 SFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE 387 (432)
T ss_pred HHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH
Confidence 22222221 2233334444555544445555555665553
No 230
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.70 E-value=8.5e-07 Score=87.85 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHhhhhcchhHHHHHHHHHHHHHHHHHhhcch---------HHHHHHHHHHHhhccC
Q 013655 66 ESLITSVVFAGMLVGAYSW----GIVSDNFGRRKGFLITAIVTSAAGLLSAFAPN---------YYLLLFFRCLVGLGLG 132 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~----g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g 132 (439)
.+++.++..+...+..++. +++.+|++..+.+.+|.++.+++.+...+..+ .+.++..+++.|+|.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666677776666666666 56666666668889999999999888766544 4678889999999999
Q ss_pred cc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHhHHHHHHHHHH
Q 013655 133 GG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP----------RLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~g~~~~~~~~~~~~~~~~~~ 198 (439)
.. |...+++.+..|++.||+++|++.....+|..++..+...... ..++...|...++.+++..++
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~ 474 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL 474 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 98 8888999999999999999999988888888887777653210 123667777777665544433
No 231
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.70 E-value=7.8e-08 Score=89.44 Aligned_cols=177 Identities=16% Similarity=0.028 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHH--------HHH-HHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 013655 29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESL--------ITS-VVFAGMLVGAYSWGIVSDNFGRRKGFLI 99 (439)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------~~~-~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 99 (439)
..++..+..+|..-...+..+.....+.+..|+.+..... ... +...++..|-++...++|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4556667777777777777777788888888776655444 111 1122333355667778999999999999
Q ss_pred HHHHHHHHHHHHhhcch----HHHHHHHHHHHhhccCcc--hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 100 TAIVTSAAGLLSAFAPN----YYLLLFFRCLVGLGLGGG--PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~--~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
+.+++.+..+..+...| -..+++...+..+..... .....+-+|.+|.+.||.+-|+..+.+-+|++++.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999988887655 122233333333332222 233345579999999999999999999999999999999
Q ss_pred Hhhc-----ccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 174 LVMP-----RLGWRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 174 ~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
++.+ ..|.+..+++.+.+.++..+..+++||+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEt 500 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPET 500 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecc
Confidence 9988 7789999999999999999988899987
No 232
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.69 E-value=8.8e-07 Score=88.26 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Q 013655 26 FQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS 105 (439)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 105 (439)
.+.+..+.+.+..+.+..+.....++.+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~ 370 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMS 370 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence 3344444555555666666677777888888888877554 556666677777888888999999999999999999999
Q ss_pred HHHHHHhhcch--------------HHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013655 106 AAGLLSAFAPN--------------YYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI 171 (439)
Q Consensus 106 ~~~~~~~~~~~--------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l 171 (439)
++.++.+.... ......+.++..+..+..++.+.+..|.+|.+.|+++.++....+.+...+-...
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~ 450 (513)
T KOG0254|consen 371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF 450 (513)
T ss_pred HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88887664311 1122233344455555556777788999999999999999887777766555444
Q ss_pred HHHhhcccchhHHHHHhHHHHHH-HH-HHHhcccCC
Q 013655 172 AWLVMPRLGWRWLLGLSAFPSSL-LL-LLYSVTPES 205 (439)
Q Consensus 172 ~~~l~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~~ 205 (439)
...+.+..++...|...+..+.+ .. ..++++||+
T Consensus 451 ~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 451 FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 44444443334444444443333 34 467778998
No 233
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.68 E-value=2.3e-07 Score=66.17 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655 41 EAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLL 120 (439)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
.++.++.+++.+|.+.++.++|.++.|++.+..++|+.+|++...++.++.++++.+..+.+...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 56788999999999999999999999999999999999999999999999888999999999999999999998887654
No 234
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.65 E-value=1.8e-07 Score=88.96 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=82.0
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh--cc--hHHHHHHHHHHHh
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF--AP--NYYLLLFFRCLVG 128 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G 128 (439)
.++.+.+|.++.+.+++.+...+...++.+++|+++||+|+|+.+..+..+.+.+..+..+ .+ +.+...+...+.+
T Consensus 250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
T TIGR00886 250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF 329 (366)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 3455678999999999999999999999999999999999998877776666665554443 22 5555555555555
Q ss_pred hccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHH
Q 013655 129 LGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVG 164 (439)
Q Consensus 129 ~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 164 (439)
++.|.. ....+.+.+..| +++|.++|+.+...++|
T Consensus 330 ~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 330 FFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 555554 445566677766 68999999988877665
No 235
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.61 E-value=2.6e-06 Score=79.88 Aligned_cols=131 Identities=20% Similarity=0.137 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchh-hHHHHhhhc
Q 013655 67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPV-LASWFLEFI 145 (439)
Q Consensus 67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~ 145 (439)
+.+.-+-.+...+..+.+.+..+|+..+.=+..+.++++++.++.+++++.+.-+++-++.+++.|..-+ ...+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 4456666677778888889999998865556666778888999999999999999999999999998843 3344 4455
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHHHh-ccc
Q 013655 146 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYS-VTP 203 (439)
Q Consensus 146 ~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~-~~~ 203 (439)
++ ...+-+..+.+.++++|+..-..+.+ .| .|..+++...+.++..+.++ .+|
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 54 34677888888888888877665555 44 46677776666555544443 444
No 236
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.58 E-value=8.6e-06 Score=78.84 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh-----hcc
Q 013655 42 AMEMMLLSFVGPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA-----FAP 115 (439)
Q Consensus 42 ~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-----~~~ 115 (439)
...........|.+. +.+|.++.+.++.......+..++..+.+++.+|.++++.+.....+..++.++.. ..+
T Consensus 231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~ 310 (413)
T PRK15403 231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPH 310 (413)
T ss_pred HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333344444556554 55699999999998888888888888888876555444443222222222222221 123
Q ss_pred hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHH
Q 013655 116 NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL 194 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~ 194 (439)
+++..++..++.++|.+.. +...... ..-....+|++.++.+.....+..+++...+++.+. +-+..|...+++..+
T Consensus 311 ~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 311 VWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 3434566777788887776 4444322 122233579999999998888888999999988665 445555554444333
No 237
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=2.9e-07 Score=84.18 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=120.0
Q ss_pred HHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHhhcchHHHH
Q 013655 44 EMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG--RRKGFLITAIVTSAAGLLSAFAPNYYLL 120 (439)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
.....-+.++. +.|.+..+.-+.|+..--..+.+.++..+.|.++||++ |-.....+.+..+++.....+++++..+
T Consensus 285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L 364 (464)
T KOG3764|consen 285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL 364 (464)
T ss_pred hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence 33344444444 55777755669999999999999999999999999999 5444456666677777778889999999
Q ss_pred HHHHHHHhhccCcc-hhhHHHHhhhcCC---C---chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHH
Q 013655 121 LFFRCLVGLGLGGG-PVLASWFLEFIPA---P---NRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSS 193 (439)
Q Consensus 121 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~---~---~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~ 193 (439)
++-++..|++.+.. ...........+. + ..|...++...++++|..+||.+++.+.+..|+++...+.++..+
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~ 444 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL 444 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence 99888888887776 4444444444433 3 567899999999999999999999999999999998888877777
Q ss_pred HHHHHH
Q 013655 194 LLLLLY 199 (439)
Q Consensus 194 ~~~~~~ 199 (439)
+...+.
T Consensus 445 iyapvl 450 (464)
T KOG3764|consen 445 IYAPVL 450 (464)
T ss_pred HHHHHH
Confidence 654443
No 238
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.46 E-value=7.4e-06 Score=80.85 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhHH-------HHHHHHHHHHHHHHH-----hhc-----chHHHHHHHHHHHhh
Q 013655 67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKG-------FLITAIVTSAAGLLS-----AFA-----PNYYLLLFFRCLVGL 129 (439)
Q Consensus 67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-------~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~l~G~ 129 (439)
+++.+...+...+.+++.+++.||+++|+. +.+|.++.+++.+.. .+. .+++.++...++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 455666667787889999999999998863 667777766665432 121 356777888899999
Q ss_pred ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHhHHHHHHHHHH
Q 013655 130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP----------RLGWRWLLGLSAFPSSLLLLL 198 (439)
Q Consensus 130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~g~~~~~~~~~~~~~~~~~~ 198 (439)
|.+.. ++..+.+.+..|++.+|.++|++.....+|..++..++..... .-.+...|...++..+++.++
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~ 471 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV 471 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999 7778999999999999999999999999999999888865521 112455666666555554444
Q ss_pred H
Q 013655 199 Y 199 (439)
Q Consensus 199 ~ 199 (439)
.
T Consensus 472 ~ 472 (489)
T PRK10207 472 M 472 (489)
T ss_pred H
Confidence 3
No 239
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.42 E-value=7.5e-10 Score=108.60 Aligned_cols=169 Identities=18% Similarity=0.265 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHh---
Q 013655 36 MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA--- 112 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~--- 112 (439)
+..+....+......+.+.+.+..+.+.. -.......+...++.+++..+.||+|||+.++.+..+.+++.+...
T Consensus 260 l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~ 337 (451)
T PF00083_consen 260 LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIF 337 (451)
T ss_pred ccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33333333334455566777788887776 2223344455556677778999999999999999888887776664
Q ss_pred -hcchH-----HHHHHHHHH--HhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhH
Q 013655 113 -FAPNY-----YLLLFFRCL--VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRW 183 (439)
Q Consensus 113 -~~~~~-----~~~~~~~~l--~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~ 183 (439)
..++. ...++...+ .+++.+..+....+..|.+|.+.|+++.|+......++..+++.+...+.+..+ +..
T Consensus 338 ~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 417 (451)
T PF00083_consen 338 FLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGV 417 (451)
T ss_pred ccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11111 111222222 222333335566788999999999999999999999999999988888877766 444
Q ss_pred HHHHhHHHHHHHHHHHhcccCCc
Q 013655 184 LLGLSAFPSSLLLLLYSVTPESP 206 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~ 206 (439)
.+...++..+...+.++++||+.
T Consensus 418 ~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 418 FLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred chhhHHHHHHHHhheeEEEeeCC
Confidence 44444444444555678889983
No 240
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.41 E-value=3.1e-06 Score=59.93 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 36 MGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
..+++.........++.|.+.++.|+|+.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 344555566667777888888899999999999999999999999999999999999988877665543
No 241
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.40 E-value=3.1e-05 Score=63.07 Aligned_cols=114 Identities=12% Similarity=0.188 Sum_probs=91.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHH
Q 013655 61 LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLAS 139 (439)
Q Consensus 61 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~ 139 (439)
+++..--.-.++......+++++.+.+.+++|.|+.++++.+...+-... .+-++.+.++.+-++.|++.+.. .....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 33434344556667777888899999999999999999999888754444 35667889999999999999999 66668
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655 140 WFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV 175 (439)
Q Consensus 140 ~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l 175 (439)
++.+...++.|++..++.-.....+.++|..+.-.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998888888888877766554
No 242
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.38 E-value=4.7e-06 Score=79.35 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=75.7
Q ss_pred chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655 356 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV 435 (439)
Q Consensus 356 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~ 435 (439)
-+......-.+.++.-++.+++++|+|+-+++.+++++..+=++.+....++|..+.+-++-|+..+..+....+|++.+
T Consensus 408 fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~v 487 (618)
T KOG3762|consen 408 FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHV 487 (618)
T ss_pred eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36667777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013655 436 SHRS 439 (439)
Q Consensus 436 ~p~~ 439 (439)
.|++
T Consensus 488 aPp~ 491 (618)
T KOG3762|consen 488 APPG 491 (618)
T ss_pred CCCc
Confidence 9975
No 243
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.36 E-value=3.2e-05 Score=75.28 Aligned_cols=139 Identities=10% Similarity=0.001 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHHHHHHHHhhcch---------------------HHHHHHHHH
Q 013655 68 LITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTSAAGLLSAFAPN---------------------YYLLLFFRC 125 (439)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 125 (439)
+....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 33445555556777788889999995 77778888888888777765432 266777888
Q ss_pred HHhhccCcc-hhhHHHHhhhcCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHH-H
Q 013655 126 LVGLGLGGG-PVLASWFLEFIPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLL-Y 199 (439)
Q Consensus 126 l~G~~~g~~-~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~-~ 199 (439)
+.|+..+.. ...++++++..++ ++.|..+|+.+.+..+.+.+.....+.+.+.+| -..++.+.++..+++.+. .
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 899998888 7777999999985 556999999999999999999988887655554 455777888888877655 5
Q ss_pred hcccCCc
Q 013655 200 SVTPESP 206 (439)
Q Consensus 200 ~~~~~~~ 206 (439)
+.+|+.+
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 5667653
No 244
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.35 E-value=1.4e-06 Score=85.02 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh-hhHHHH
Q 013655 309 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSM 387 (439)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~ 387 (439)
+..+.+++.-+...+.+|+...+.+.+..+. .|.+...+......+.+...++.+++|+++||+ |||+++
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~---------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i 79 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ---------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV 79 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 4445556666677788888888888887431 346777777778888888899999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhhccc-cchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 388 SSMFFCCCIFLVPLLFQQP-KGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
.++.++.+++.+++....+ .....+...+..++.+...+...++++|.+|++
T Consensus 80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence 9999998888766654322 122333334444556666677778899999863
No 245
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.34 E-value=3.9e-05 Score=76.06 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQ-SLWHLSP---NQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTS 105 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~ 105 (439)
+....+..+..++..+....+.|... ..++-++ ...++......++..+++.+.|.+..+++| |+.++++.+++.
T Consensus 312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t 391 (599)
T PF06609_consen 312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT 391 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 44444445555555555555555543 3455444 356888888899999999999999998886 555567766666
Q ss_pred HHHHHHhhc--chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655 106 AAGLLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL 174 (439)
Q Consensus 106 ~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~ 174 (439)
++..+++.. +|....+...++.|++.|.. .+......-..|+++-|.+.|+..+...+|+.+|..+..-
T Consensus 392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 554444433 45555667778999998887 4555555566788999999999999999988888776543
No 246
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=98.30 E-value=0.0015 Score=63.85 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=94.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHH
Q 013655 22 GFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLW---HLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGF 97 (439)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~ 97 (439)
+..+..+..++.+.+.+++..+.+... -.+.|.+ ...+..+..+-....+ ...+...+..++++++++++++
T Consensus 17 pi~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lF 92 (491)
T PF03219_consen 17 PIHRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLF 92 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344556666666666666666544433 2333332 2245555666554444 4445577899999999999987
Q ss_pred HHHHHHHHHHHHHHhhc---------ch----------------------HHHHHHHHHHHhhccCcc-h-hhHHHHhhh
Q 013655 98 LITAIVTSAAGLLSAFA---------PN----------------------YYLLLFFRCLVGLGLGGG-P-VLASWFLEF 144 (439)
Q Consensus 98 ~~~~~~~~~~~~~~~~~---------~~----------------------~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~ 144 (439)
-...........++++. ++ .|...+..++.-+-.... . .-+.+.+|.
T Consensus 93 y~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 93 YIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66555554444443331 11 122222222222222222 3 345888999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 145 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 145 ~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
...++-.+..+++..+.++|.++++.+..++.+
T Consensus 173 tt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 173 TTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888877
No 247
>PTZ00207 hypothetical protein; Provisional
Probab=98.16 E-value=6e-05 Score=75.11 Aligned_cols=171 Identities=11% Similarity=-0.091 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchh--hHHHHHHHHHHHHHHHHHHHHhhhhcc--------hhHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLW-HLSPNQ--ESLITSVVFAGMLVGAYSWGIVSDNFG--------RRKGFLI 99 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~G--------~r~~~~~ 99 (439)
+|++++.+++..........=+.++.+.+ |.+.+. .....++..++..+|.+..|.+....- +|+..+.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 34444444444333333333345666777 663322 222788999999999999998872221 1223333
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHH-HHHHHHhhc
Q 013655 100 TAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILE-AGIAWLVMP 177 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~-~~l~~~l~~ 177 (439)
...++.++.+++++.-....+++..++.|++.|.. +.....+.|.+. ++-|+-..+......+|..+- ..+.|.+.|
T Consensus 435 ~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd 513 (591)
T PTZ00207 435 IPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT 513 (591)
T ss_pred HHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33335566666555533368899999999999999 777788999999 999999999999999998876 567777764
Q ss_pred cc----------c---hhHHHHHhHHHHHHHHHHHhcc
Q 013655 178 RL----------G---WRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 178 ~~----------g---~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
.- | ++.+|++.+..++++.++...+
T Consensus 514 ~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 514 QQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred HHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 21 1 7888999888888876664433
No 248
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=98.15 E-value=0.0044 Score=59.17 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CchhhHHHHHHHHH-HHHHHHHHHHHhhhhcchhHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL---SPNQESLITSVVFA-GMLVGAYSWGIVSDNFGRRKGFL 98 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~ 98 (439)
.++..+..+..+.+.+++..+.+... -.+.+.+.+ .+..+.++-+...+ +..+..++.+++.++..+++++-
T Consensus 21 i~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~ 96 (509)
T COG3202 21 IRRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY 96 (509)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 44555555655555555555544333 345555543 45666777777766 67778889999999999999877
Q ss_pred HHHHHHHHHHHHHhhc---------ch-----------------------HHHHHHHHHHHhhccCcc-h-hhHHHHhhh
Q 013655 99 ITAIVTSAAGLLSAFA---------PN-----------------------YYLLLFFRCLVGLGLGGG-P-VLASWFLEF 144 (439)
Q Consensus 99 ~~~~~~~~~~~~~~~~---------~~-----------------------~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~ 144 (439)
..........+++++. ++ .|...+..++.=+-.... . .-+....|.
T Consensus 97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei 176 (509)
T COG3202 97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI 176 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666555555431 11 123333333333322222 2 344778899
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 145 IPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 145 ~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
...++-.|..++++.+.+++..++..+..++.+
T Consensus 177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988866
No 249
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.13 E-value=4.3e-05 Score=74.59 Aligned_cols=160 Identities=16% Similarity=0.066 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh----cchhHHHHHHHHHH
Q 013655 30 VLAYAGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN----FGRRKGFLITAIVT 104 (439)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~~~~~~~ 104 (439)
.++..++..++.....+...+++|.+.++ .|+|..+.+.+...+.++.+++.+++|+++|| ..+|........+.
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35556667777777777788888988877 66999999999999999999999999999999 56666666555554
Q ss_pred HHHH-HHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHH-HHHhhcccc
Q 013655 105 SAAG-LLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN-RGFWMVIFQTFWTVGTILEAGI-AWLVMPRLG 180 (439)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~i~~~l-~~~l~~~~g 180 (439)
.... ......++........+..+.+.+.. +....+..+....+. |-...+....+.+.++.++|.+ .+.....++
T Consensus 354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~ 433 (495)
T KOG2533|consen 354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG 433 (495)
T ss_pred HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence 4433 44444443444444333333434444 445566666665444 4444455555556555555444 444455578
Q ss_pred hhHHHHHhH
Q 013655 181 WRWLLGLSA 189 (439)
Q Consensus 181 ~~~~~~~~~ 189 (439)
|...|....
T Consensus 434 ~~~~f~~~~ 442 (495)
T KOG2533|consen 434 WGAVFYMLV 442 (495)
T ss_pred hhhHHHHHH
Confidence 888874433
No 250
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=98.10 E-value=0.00037 Score=67.42 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=43.4
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhh------------ccccchhhhHHHHHHhhhhh
Q 013655 357 YGDVFITSFAEFPGLLLAAAMVDRLGRK-LSMSSMFFCCCIFLVPLLF------------QQPKGLTTGLLFGARICITV 423 (439)
Q Consensus 357 ~~~~~~~~i~~~~g~~~~g~l~dr~grr-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~ 423 (439)
......+.++..+||.+..+..- -++| +.+.+..+.-.+..-++.+ .++.+..++..+++|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 56677788999999987654311 1122 1222223222222222211 12344556677788887777
Q ss_pred eeeeeeeecccccc
Q 013655 424 TFTVVYVYAPEVSH 437 (439)
Q Consensus 424 ~~~~~~~~~~e~~p 437 (439)
.....+.+.++..+
T Consensus 389 ~~s~~m~~~p~~v~ 402 (437)
T TIGR00939 389 LGSLSMCLAPRQVD 402 (437)
T ss_pred HHHHHHHhcCCCCC
Confidence 66666666666544
No 251
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.98 E-value=0.00037 Score=69.80 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=102.1
Q ss_pred HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHH---HHHHHHHHHhh
Q 013655 53 PAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYY---LLLFFRCLVGL 129 (439)
Q Consensus 53 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~ 129 (439)
+.....+|.+.... ..........+....+...|++|||.....+.++..++.+..++..... ...+...+..+
T Consensus 342 ~~~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (521)
T KOG0255|consen 342 SLNVSGLGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF 418 (521)
T ss_pred hhhhhhcCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 33444455544333 3333335555566668999999999999999999999999888775432 34444444444
Q ss_pred ccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH-HHHHhcccCCch
Q 013655 130 GLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL-LLLYSVTPESPR 207 (439)
Q Consensus 130 ~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 207 (439)
+.+.. .....+..|..|+..|..+.+.......+|.+++|.+...... ......+.+.+....+. .+..+++||+..
T Consensus 419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 55544 4557888999999999999999999999999999988866544 22222222334444444 444588898854
No 252
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.84 E-value=8.4e-05 Score=70.78 Aligned_cols=125 Identities=14% Similarity=0.052 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh-hhHHHHH
Q 013655 310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSMS 388 (439)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~ 388 (439)
.++.++..=+.-=++||++...+..|....- .. ..|+++..+...++.++...-+..+++||++||+ |+|+++.
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~----~~-gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~ 96 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQL----GD-GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV 96 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc----cc-cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 3455555555666777877776666653321 01 1447777786667777777778889999999995 9999999
Q ss_pred HHHHHHHHHHHHHhhcc--ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 389 SMFFCCCIFLVPLLFQQ--PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 389 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
++.++++++.+.+.... ....+.+.+.+++.+.|..=|...++..|.+|++
T Consensus 97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence 99999999999988774 5566777788888999999899999999999874
No 253
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.82 E-value=0.0067 Score=60.64 Aligned_cols=155 Identities=16% Similarity=0.184 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHHHhhcc----------
Q 013655 47 LLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLLSAFAP---------- 115 (439)
Q Consensus 47 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~---------- 115 (439)
.....+.++.++++.+...+.-....+.-......+.+++++|-| ||-+++.++.++..++..+..+..
T Consensus 56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 345667788899999888888888888888888899999999975 898999888888777765443321
Q ss_pred ------------h---HHHHHHHHHHHhhccCcc-hhhHHHHhhhcC---C-Cc--hhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 116 ------------N---YYLLLFFRCLVGLGLGGG-PVLASWFLEFIP---A-PN--RGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 116 ------------~---~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~---~-~~--rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
+ ...+....-+..+|.|+. +...++-+|.++ + ++ +...+.++....++|..++..+..
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 1 134556666777888988 877788888887 2 22 236778889999999999999999
Q ss_pred HhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 174 LVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 174 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
+.-++.+|...|.+..+..++++++++.
T Consensus 216 yiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 216 YIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 9888999999998888777766655443
No 254
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.81 E-value=0.0005 Score=66.75 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=108.6
Q ss_pred HhhhcCCCchhhHHHHHHHHHHHHHHHHHHH-HhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCc
Q 013655 55 VQSLWHLSPNQESLITSVVFAGMLVGAYSWG-IVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG 133 (439)
Q Consensus 55 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 133 (439)
+...++++..+.+...+...+...+++.+.. .+...+|-|+++.+|++...+.....+++.+.|+.+...++.++....
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIV 347 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcch
Confidence 4456899999999999888888888888777 777788999999999999999999999999999999999888887777
Q ss_pred chhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013655 134 GPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM 176 (439)
Q Consensus 134 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~ 176 (439)
.+...+.+..+.+++++|++.++.....++...++|.+-+.+.
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 7888899999999999999999999999999999998877664
No 255
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.79 E-value=0.00026 Score=64.01 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=110.2
Q ss_pred HHHHHHh-hhcCCCchhhH-HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 013655 50 FVGPAVQ-SLWHLSPNQES-LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLV 127 (439)
Q Consensus 50 ~~~~~~~-~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (439)
+..|++. .+.+++..+.. -+.-...-.+.+.-.+.=.+.|....|+++++-.+.......+..+.++.+.+-+.-++.
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3445554 44566665542 122222334455556667789999889998877777777777888888999888888888
Q ss_pred hhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 128 GLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG--WRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 128 G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
|...+.-.+.++++-+.++++++-++.|...+..-.|-..|..++..+...-. +...=.+......++.++.+++|..
T Consensus 106 G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v 185 (433)
T KOG3810|consen 106 GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRV 185 (433)
T ss_pred ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCC
Confidence 88777666777889899999999999999999888888888888888765433 3333334444444555666777765
Q ss_pred c
Q 013655 206 P 206 (439)
Q Consensus 206 ~ 206 (439)
+
T Consensus 186 ~ 186 (433)
T KOG3810|consen 186 K 186 (433)
T ss_pred c
Confidence 4
No 256
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.0011 Score=60.83 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-----hcchhHHHHH-HHH
Q 013655 29 CVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSD-----NFGRRKGFLI-TAI 102 (439)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~G~r~~~~~-~~~ 102 (439)
.-+..+.+.+..++....... .+|.+.+.-|.|.++.+....++.=. -.-+++..+.| |+||||..++ +..
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 334455566888888888887 88999988899988887655444322 23678888999 9999987543 333
Q ss_pred HHHHHHHHHhhc-----------chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 013655 103 VTSAAGLLSAFA-----------PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAG 170 (439)
Q Consensus 103 ~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~ 170 (439)
+.+..+.+.+.. ++...+....++.-+..+.. .+.-.+.-.+..+++.|.+......+.+.|.+++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 334444433332 22333333445555555655 555677777788888888877777777777766655
Q ss_pred HH
Q 013655 171 IA 172 (439)
Q Consensus 171 l~ 172 (439)
+.
T Consensus 188 if 189 (510)
T KOG3574|consen 188 VF 189 (510)
T ss_pred ee
Confidence 43
No 257
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.78 E-value=0.00033 Score=64.32 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=107.0
Q ss_pred hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCc
Q 013655 56 QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG--RRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGG 133 (439)
Q Consensus 56 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 133 (439)
...+|+++.+.|-+.+...++..+.+....+..||.. .+-.+..+..++.-..++...++....+..+..+-.+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999987 67777788888777788888888888888888888888777
Q ss_pred c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
. +....++....|.++||..+|+......++-++||.++|.+..
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 7 6677888999999999999999999999999999999987654
No 258
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.73 E-value=1.1e-05 Score=64.73 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=64.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 361 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 361 ~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+...++.+++.++.|++.||+|||+.+..+..+..++.+.+...++.+...+..++.+++.+...+....+..|.+|++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 3455677889999999999999999999888888888777766666666677778888888888888888888888863
No 259
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.71 E-value=0.0002 Score=68.34 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc--c-h------HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCC---chhhHHHHHHHHH
Q 013655 95 KGFLITAIVTSAAGLLSAFA--P-N------YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAP---NRGFWMVIFQTFW 161 (439)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~--~-~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~rg~~~~~~~~~~ 161 (439)
|+++++.++..+|.++..++ + . .+.++++..+.++|.|+. +...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888874433 1 2 367888899999999999 99999999999765 4677788899999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcc
Q 013655 162 TVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 162 ~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
++|..+++.+.+++.+++||...|.+.++..+++++.+..-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888877765543
No 260
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.63 E-value=0.0011 Score=63.34 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHHHHhhh-----hcchhHHHHH-HHHHH
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSL--WHLSPNQESLITSVVFAGMLVGAYSWGIVSD-----NFGRRKGFLI-TAIVT 104 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~G~r~~~~~-~~~~~ 104 (439)
++.+.++.++...+.....+|.+.++ -+.|.++.|...-+. ..+. .-+++..+.| |+||||..++ .-.+.
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~-~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLAS-YPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeee-chhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 44566788888777765567888877 688888887543221 1111 1345555555 7899987543 23333
Q ss_pred HHHHHHHhhcc----------------------h--HHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHH
Q 013655 105 SAAGLLSAFAP----------------------N--YYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQT 159 (439)
Q Consensus 105 ~~~~~~~~~~~----------------------~--~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~ 159 (439)
++.++..+..- + ...+....++.=+-.+.. .+.-.+.-....+++++.+......
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 33333322111 0 112222332233333444 4455666667788888888877777
Q ss_pred HHHHHHHHHHHHHHHh
Q 013655 160 FWTVGTILEAGIAWLV 175 (439)
Q Consensus 160 ~~~~g~~i~~~l~~~l 175 (439)
+.+.|..++..+.-.+
T Consensus 162 G~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLAL 177 (544)
T ss_pred HhhhhHHHHHHHHHhh
Confidence 7777777766554443
No 261
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.59 E-value=9.2e-05 Score=69.65 Aligned_cols=89 Identities=10% Similarity=-0.165 Sum_probs=80.8
Q ss_pred CCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeee
Q 013655 351 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 430 (439)
Q Consensus 351 ~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 430 (439)
.+....+++.....+..++..++.|++.||+.|++++.+|..+..++.++-.+..+.|...+.=.+.|+|.....|+...
T Consensus 65 i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s 144 (493)
T KOG1330|consen 65 ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS 144 (493)
T ss_pred CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchh
Confidence 56666688999999999999999999999999999999999999999998888888888888888999999999999999
Q ss_pred eccccccCC
Q 013655 431 YAPEVSHRS 439 (439)
Q Consensus 431 ~~~e~~p~~ 439 (439)
++++.||.+
T Consensus 145 ~IaD~f~~~ 153 (493)
T KOG1330|consen 145 LIADSFPDD 153 (493)
T ss_pred HhhhcCcch
Confidence 999999853
No 262
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.42 E-value=0.0011 Score=62.45 Aligned_cols=158 Identities=13% Similarity=0.020 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcch-hHHHHHHHHHHHHHHHH-Hhhc---chHHH
Q 013655 45 MMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGR-RKGFLITAIVTSAAGLL-SAFA---PNYYL 119 (439)
Q Consensus 45 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~-~~~~---~~~~~ 119 (439)
.+.....+......-|.+....|++.....++.++++.+.|.+.||.+. |.+++.......++... ..+. .+.+.
T Consensus 282 F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~vi 361 (480)
T KOG2563|consen 282 FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVI 361 (480)
T ss_pred HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEe
Confidence 3344444444455567788899999999999999999999999999864 55555555555555222 2221 23344
Q ss_pred HHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhHHHHHhHHHHHH
Q 013655 120 LLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG----WRWLLGLSAFPSSL 194 (439)
Q Consensus 120 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g----~~~~~~~~~~~~~~ 194 (439)
+.....+.|++.... |...-+-.|...|..-+.-.|+.+....+-+++-..+.+...+..+ |...-+.....+++
T Consensus 362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 441 (480)
T KOG2563|consen 362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALL 441 (480)
T ss_pred hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHH
Confidence 555556666665555 7666777787777667778888888777777777777777777665 44333444444444
Q ss_pred HHHHHhcc
Q 013655 195 LLLLYSVT 202 (439)
Q Consensus 195 ~~~~~~~~ 202 (439)
..++..++
T Consensus 442 ~~~lva~~ 449 (480)
T KOG2563|consen 442 GAILVAFF 449 (480)
T ss_pred HHHHHhhh
Confidence 44444444
No 263
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.30 E-value=0.00056 Score=65.65 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=78.6
Q ss_pred cCCCCCC-chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeee
Q 013655 349 SGKSRDI-NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTV 427 (439)
Q Consensus 349 ~g~~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 427 (439)
.|.+.++ .+...+.+..+-.+..+.+|+++||+|.|+++..+.+...+..+++.+.++...+.++=++.|++.+..+ .
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A 134 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-A 134 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4477877 6899999999999999999999999999999999999999999999888787778888889999998888 7
Q ss_pred eeeeccccccC
Q 013655 428 VYVYAPEVSHR 438 (439)
Q Consensus 428 ~~~~~~e~~p~ 438 (439)
...++...+|+
T Consensus 135 ~~syI~~WfP~ 145 (511)
T TIGR00806 135 YSSYIFSLVPP 145 (511)
T ss_pred HHHHHHHHCCH
Confidence 88888877775
No 264
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.29 E-value=0.0003 Score=71.77 Aligned_cols=91 Identities=10% Similarity=-0.107 Sum_probs=74.7
Q ss_pred cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc-----------------------
Q 013655 349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ----------------------- 405 (439)
Q Consensus 349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------------------- 405 (439)
.+.+....++..+.+.++..++.++.+++.||.+||+.+.++.++++++.+++.+.+
T Consensus 63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~ 142 (633)
T TIGR00805 63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS 142 (633)
T ss_pred hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence 346777778899999999999999999999999999999999988888877765431
Q ss_pred ----------------------------ccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 406 ----------------------------PKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 406 ----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
....+++.-++.|++.+..+++..+++.|.+|++
T Consensus 143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~ 204 (633)
T TIGR00805 143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK 204 (633)
T ss_pred ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence 0123445678889999999999999999999874
No 265
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0096 Score=55.89 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=46.1
Q ss_pred hhhHHH-HhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh---------hccccchhhhHHHHHHhhhhheee
Q 013655 357 YGDVFI-TSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLL---------FQQPKGLTTGLLFGARICITVTFT 426 (439)
Q Consensus 357 ~~~~~~-~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~ 426 (439)
-..... +.+...+|.++..+.-++- ||.. .+...+-.+..-++. ...+.++.+....++|+..|-..+
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 334444 6777788866666644432 3332 222222222221121 234556677778888888888888
Q ss_pred eeeeeccccccC
Q 013655 427 VVYVYAPEVSHR 438 (439)
Q Consensus 427 ~~~~~~~e~~p~ 438 (439)
+.+.+.++-.|+
T Consensus 363 l~m~~aPk~v~~ 374 (406)
T KOG1479|consen 363 LIMMYAPKQVKP 374 (406)
T ss_pred heehhcCCCCCh
Confidence 888888877765
No 266
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.16 E-value=0.018 Score=55.42 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Q 013655 28 LCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA 107 (439)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 107 (439)
....+...++..+.++........+..+....|+++..+|..-+...+....+.+...++.+|+|..|.-+++......+
T Consensus 257 ~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 257 RQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVC 336 (432)
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 33444555555555554444555566666667999999999999999999999999999999999888877766654433
Q ss_pred HHHHh---hc---c----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 108 GLLSA---FA---P----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 108 ~~~~~---~~---~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
..+.. +. + +...++.+..+.-+|.=.. .....++.|..|+++||...|.-....++-.++...++-
T Consensus 337 L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 337 LALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 22 1 2333444444444444444 455577789999999999999988888887776655543
No 267
>PRK03612 spermidine synthase; Provisional
Probab=97.03 E-value=0.071 Score=53.05 Aligned_cols=139 Identities=19% Similarity=0.130 Sum_probs=79.1
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHH-HHHHHHHH----hhcchH-HHHHHHHHH
Q 013655 54 AVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLI-TAIV-TSAAGLLS----AFAPNY-YLLLFFRCL 126 (439)
Q Consensus 54 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~-~~~~~~~~----~~~~~~-~~~~~~~~l 126 (439)
.+.--+|-+....+.+.+++..|..+|+.+++++.++.-++....- +..+ .+++..+. .+.... ..++...++
T Consensus 40 ~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 40 LASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444568889999999999999999999999988744333322111 1111 11111111 111111 122333445
Q ss_pred HhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHhHHHHH
Q 013655 127 VGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRLGWRWLLGLSAFPSS 193 (439)
Q Consensus 127 ~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-~~~g~~~~~~~~~~~~~ 193 (439)
.++..|+. |....+..+. ..++-|...|-......+|+++|.++.+++. ...|-....++.+.+.+
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 56666666 4444433332 2223567788888889999999998877654 46775544444444333
No 268
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.95 E-value=0.0047 Score=43.71 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=39.4
Q ss_pred cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013655 349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC 394 (439)
Q Consensus 349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 394 (439)
.|.+..+.+....+..+..+++.+++|+++||.++++.......++
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 5588888899999999999999999999999999888776655443
No 269
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.89 E-value=0.0058 Score=59.42 Aligned_cols=145 Identities=18% Similarity=0.197 Sum_probs=101.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-c---------chHHHHHHHHHHHhhc
Q 013655 61 LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-A---------PNYYLLLFFRCLVGLG 130 (439)
Q Consensus 61 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~G~~ 130 (439)
+|+...|.+..+..++..++..+.....-+..-|+++..+.++.++..+.-.. . ++.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 88888999988888888899888888877888888888777776655543221 1 1222222333444444
Q ss_pred cCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccch--------hHHHHHhHHHHHHHHHHHhc
Q 013655 131 LGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGW--------RWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 131 ~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~--------~~~~~~~~~~~~~~~~~~~~ 201 (439)
.+.. .+...+++|..|+...|..+++.....++|..++..++..+.+.++. ....++..+..++.+.+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45557789999999999999999999999999999999988766552 22334444555555555666
Q ss_pred ccCC
Q 013655 202 TPES 205 (439)
Q Consensus 202 ~~~~ 205 (439)
+|+.
T Consensus 412 Lp~~ 415 (433)
T PF03092_consen 412 LPPQ 415 (433)
T ss_pred cCCC
Confidence 6664
No 270
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.68 E-value=0.0047 Score=59.60 Aligned_cols=177 Identities=7% Similarity=0.022 Sum_probs=105.9
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCchhhHHHHHHH----HHHHHHHHHHHHHhh-hhcchh
Q 013655 21 MGFGKFQLCVLAYAGMGWISEAMEMMLLSFV-GPAVQSLWHLSPNQESLITSVV----FAGMLVGAYSWGIVS-DNFGRR 94 (439)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~----~~~~~~~~~~~g~l~-dr~G~r 94 (439)
....+..|...+.+.+..+...+........ .+.....++++.++.-...+.. .+......+..+... -++.+|
T Consensus 254 ~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r 333 (488)
T KOG2325|consen 254 VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR 333 (488)
T ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3455666776666666666666555553333 3344456777776664444333 332222222222222 233446
Q ss_pred HHHHHHHHHHHHHHHHHhh----c---------------------------chHHHHHHHH-HHHhhccCcc-hhhHHHH
Q 013655 95 KGFLITAIVTSAAGLLSAF----A---------------------------PNYYLLLFFR-CLVGLGLGGG-PVLASWF 141 (439)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~~~~-~l~G~~~g~~-~~~~~~~ 141 (439)
+.+..+.++......+..+ . .+.+.+++.+ ++.|.+.-.. ....++.
T Consensus 334 ~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly 413 (488)
T KOG2325|consen 334 RIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY 413 (488)
T ss_pred eeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence 6666554444333332211 0 0112233333 3455555555 4566888
Q ss_pred hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 013655 142 LEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 142 ~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 197 (439)
++...+++++.+.+++......+..++|.+........|.|..+.+.+...++...
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888988887776655555433
No 271
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.60 E-value=0.053 Score=51.38 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH--HH---HHHHhhcchHHHHHHHHHHHhhccCcc-hh
Q 013655 63 PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTS--AA---GLLSAFAPNYYLLLFFRCLVGLGLGGG-PV 136 (439)
Q Consensus 63 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~ 136 (439)
.++..+....+.+|-.++.--...+ |+ |+..+.+.+-.. +. ....-+.++.|..++..+..|+..|.. ..
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566677777777766665433221 33 444444333222 11 222334678999999999999998888 55
Q ss_pred hHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655 137 LASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV 175 (439)
Q Consensus 137 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l 175 (439)
....+.+..++++|..++|....+-++|..++..++-++
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567778888999999999999999999999988887665
No 272
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.48 E-value=0.0037 Score=55.32 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=56.2
Q ss_pred HHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013655 320 GNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLV 399 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 399 (439)
......|....+.|.+... .+.++.+.........++..+| ++.|.+.||+|.+.++.++.+...++..
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~----------l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~ 81 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSR----------LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYG 81 (250)
T ss_pred HhcCcccchhhhhHHHHHH----------hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3444556666777777754 3377777777777777777775 8889999999999999999999999988
Q ss_pred HHhh
Q 013655 400 PLLF 403 (439)
Q Consensus 400 ~~~~ 403 (439)
.++.
T Consensus 82 ~~~l 85 (250)
T PF06813_consen 82 LLWL 85 (250)
T ss_pred HHHH
Confidence 7764
No 273
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=96.45 E-value=0.64 Score=42.44 Aligned_cols=70 Identities=9% Similarity=0.168 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhh
Q 013655 73 VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLE 143 (439)
Q Consensus 73 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~ 143 (439)
..+..+.++++.+.+..++|-|.++.++......... .-+-+.+..++..-...|++.+.. ....+++++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~ 137 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTP 137 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecH
Confidence 3445556677777999999999999888776554332 223467788888999999998876 333344443
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.31 Score=47.16 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh---cchhHHHHHHHHHHHHHHHHHhhc------------------chHHHHHHHH
Q 013655 66 ESLITSVVFAGMLVGAYSWGIVSDN---FGRRKGFLITAIVTSAAGLLSAFA------------------PNYYLLLFFR 124 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~g~l~dr---~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 124 (439)
.++..-...++..+++.+.+.+.+| +||++.+.++..+..++.++.... +++....+..
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 3444445566666667777777765 688898888888877777665432 2356777888
Q ss_pred HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 013655 125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIA 172 (439)
Q Consensus 125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~ 172 (439)
++.|++.+.. ...+..+.... +++|..+.++.-.-..++..++-...
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999988 66667777777 67778888887777666665544333
No 275
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.22 E-value=0.056 Score=49.95 Aligned_cols=77 Identities=12% Similarity=-0.067 Sum_probs=56.8
Q ss_pred cCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheee
Q 013655 349 SGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426 (439)
Q Consensus 349 ~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 426 (439)
.|++..+.........+.+.+...+.|.+.||+|||+..+...++..++++.- ..++...+++.=++.|+..+..++
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence 34777777777777778888888899999999999999888888888887643 334555555555666666555443
No 276
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=95.88 E-value=0.031 Score=49.06 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=35.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHh---h--cccchhHHHHHhHHHHHHHHHHHhcc
Q 013655 148 PNRGFWMVIFQTFWTVGTILEAGIAWLV---M--PRLGWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 148 ~~rg~~~~~~~~~~~~g~~i~~~l~~~l---~--~~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
++|+..+.+...+.++|.++.-..--.- . -.-.|+..+.+.+++.++-++++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777777888877654332111 1 12359999998888887777766555
No 277
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.15 E-value=0.22 Score=40.65 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=61.6
Q ss_pred CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeec
Q 013655 353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA 432 (439)
Q Consensus 353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 432 (439)
.........+......++.++.+.+.+++|.|+.++++.+...+..+... .++.+..+....+.|++.+..+..--.++
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 33445666666777788889999999999999999999998887666654 34456667777888888887776655555
Q ss_pred cccc
Q 013655 433 PEVS 436 (439)
Q Consensus 433 ~e~~ 436 (439)
.+..
T Consensus 115 t~~s 118 (156)
T PF05978_consen 115 TSYS 118 (156)
T ss_pred HHcC
Confidence 5443
No 278
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=95.11 E-value=0.11 Score=37.31 Aligned_cols=73 Identities=10% Similarity=0.021 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Q 013655 326 YGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQ 405 (439)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 405 (439)
+..+...|...++ .+.+..+++...+...++-.+|.+...++.++..++..+..+.+.+.+..+.+.+.+
T Consensus 9 FayTplLP~M~~~----------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 9 FAYTPLLPLMQAD----------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHhHhHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456666544 448888889999999999999999999999998888889999999999888887766
Q ss_pred ccc
Q 013655 406 PKG 408 (439)
Q Consensus 406 ~~~ 408 (439)
+.+
T Consensus 79 ~~~ 81 (85)
T PF06779_consen 79 SFW 81 (85)
T ss_pred chH
Confidence 654
No 279
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=94.01 E-value=0.21 Score=44.98 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhc
Q 013655 66 ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFI 145 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~ 145 (439)
.|.+.-+-.+...+..+.+....||+---.-+.+..++.+.+.++.+++++.++-+.+..+..++.|..-+..--++..+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 35555555666677777888889987543335556677888899999999999999999999888887744433333333
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHhcc
Q 013655 146 PAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP--RLGWRWLLGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 146 ~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (439)
++. ..+-+..+.+.++++|..--..+.+ ...-|...++...+.++....++++
T Consensus 144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 332 2333444444445555433333333 3456777776665555544444443
No 280
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.74 E-value=1.5 Score=41.88 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=73.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhH
Q 013655 62 SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRK--GFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLA 138 (439)
Q Consensus 62 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~ 138 (439)
+..--|.+-++..+.++++.+..|++..++.+-. .+....++.+...+++++.++.|..+++.++.+...... +...
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444588888888899999999999977776643 334445556677778888999999999998887776666 6666
Q ss_pred HHHhhhcCCCchhhHHHHHHHH
Q 013655 139 SWFLEFIPAPNRGFWMVIFQTF 160 (439)
Q Consensus 139 ~~~~~~~~~~~rg~~~~~~~~~ 160 (439)
.-++.....++-|..+|+....
T Consensus 363 ~qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHHHhccccceeeeeeeHHHH
Confidence 6677777777777777775543
No 281
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=93.61 E-value=0.02 Score=57.19 Aligned_cols=149 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcc--hhHHHHHHHHHHH
Q 013655 30 VLAYAGMGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFG--RRKGFLITAIVTS 105 (439)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~ 105 (439)
++....++.....+.......+.| ++..+|+.++++++++.++..+ +.++|.+++|++..|+. .|..+....+...
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 444555555555555544455554 6667899999999999877666 77788999999999985 3444433333332
Q ss_pred HHHHH---Hhh-----------cch----------------------------------------HHHHHHHHHHHhhcc
Q 013655 106 AAGLL---SAF-----------APN----------------------------------------YYLLLFFRCLVGLGL 131 (439)
Q Consensus 106 ~~~~~---~~~-----------~~~----------------------------------------~~~~~~~~~l~G~~~ 131 (439)
++.++ ..+ ... +..+++..++.-+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 22221 000 000 112223333333333
Q ss_pred Ccc-hhhHHHHhhhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 013655 132 GGG-PVLASWFLEFIPAPNRGFWMVIFQT-FWTVGTILEAGIAWLVMPR 178 (439)
Q Consensus 132 g~~-~~~~~~~~~~~~~~~rg~~~~~~~~-~~~~g~~i~~~l~~~l~~~ 178 (439)
+.. .+....+-+.+++++|+.++|+... ..-+|.+-+|++.|.+.|.
T Consensus 466 ~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 466 FMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------------
T ss_pred HhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 333 3344555688999999999999654 4556778899999988874
No 282
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=93.56 E-value=0.17 Score=51.70 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=60.7
Q ss_pred CCCCCchhhHHHHhhhhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhcccc--------chhhhHHHHHHhhh
Q 013655 351 KSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMSSMFFCCCIFLVPLLFQQPK--------GLTTGLLFGARICI 421 (439)
Q Consensus 351 ~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~ 421 (439)
.+...+......+....-+..+++|++.|+ +||++++.++.++..++.+++.+.... ...+..+.+..+|.
T Consensus 20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~ 99 (654)
T TIGR00926 20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGT 99 (654)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhc
Confidence 444455445555555566677888999996 699999999999888887776653211 12445566777788
Q ss_pred hheeeeeeeecccccc
Q 013655 422 TVTFTVVYVYAPEVSH 437 (439)
Q Consensus 422 ~~~~~~~~~~~~e~~p 437 (439)
++.-|...+...+.++
T Consensus 100 GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 100 GGIKPCVSAFGGDQFE 115 (654)
T ss_pred cccccCchhhhHhhcC
Confidence 8888888888777665
No 283
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=93.11 E-value=0.8 Score=44.53 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchh-HHHHHHHHH---HHHHHHHHhh---------cchHHHHHHHHHHHhhccCc
Q 013655 67 SLITSVVFAGMLVGAYSWGIVSDNFGRR-KGFLITAIV---TSAAGLLSAF---------APNYYLLLFFRCLVGLGLGG 133 (439)
Q Consensus 67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r-~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~g~ 133 (439)
-.+...+.++-.+|..+..+.. .-++| +.+.+..+. .....+++.. .++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566677788888777654421 11222 123332322 2222222221 23556677778999999998
Q ss_pred c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655 134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL 174 (439)
Q Consensus 134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~ 174 (439)
. .....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6666777888888999988888888888888888776543
No 284
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=91.97 E-value=0.028 Score=51.99 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=2.8
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhh-------------ccccchhhhHHHHHHhhhhh
Q 013655 358 GDVFITSFAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIFLVPLLF-------------QQPKGLTTGLLFGARICITV 423 (439)
Q Consensus 358 ~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~~~~~ 423 (439)
.....+.++..+|+.+.++..-+. .+|++. +..+.-.+..-++.. .++.+..++..+++|+..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 456678899999999988753221 234433 222222222211111 12334555667777777777
Q ss_pred eeeeeeeecccccc
Q 013655 424 TFTVVYVYAPEVSH 437 (439)
Q Consensus 424 ~~~~~~~~~~e~~p 437 (439)
...+.+.+.++..+
T Consensus 265 l~tl~m~~~p~~v~ 278 (309)
T PF01733_consen 265 LSTLAMMYAPKSVS 278 (309)
T ss_dssp --HHHH--------
T ss_pred hhhceeeeCCCcCC
Confidence 66666666666554
No 285
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=89.69 E-value=0.29 Score=44.35 Aligned_cols=83 Identities=16% Similarity=-0.039 Sum_probs=56.0
Q ss_pred chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc--cchhhhHHHHHHhhhhheeeeeeeecc
Q 013655 356 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQP--KGLTTGLLFGARICITVTFTVVYVYAP 433 (439)
Q Consensus 356 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 433 (439)
.........+...++.++.|.+.||.|||+.+..+.....+..+...+..+ .+...+.....|++.+...+....+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 120 (338)
T COG0477 41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120 (338)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467777777788888899999999999997777776553444333333333 333334444467777777777777777
Q ss_pred ccccC
Q 013655 434 EVSHR 438 (439)
Q Consensus 434 e~~p~ 438 (439)
|.+|.
T Consensus 121 ~~~~~ 125 (338)
T COG0477 121 EWFPE 125 (338)
T ss_pred HhcCc
Confidence 77763
No 286
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=89.38 E-value=17 Score=34.74 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhhc
Q 013655 78 LVGAYSWGIVSDNF 91 (439)
Q Consensus 78 ~~~~~~~g~l~dr~ 91 (439)
.+.....|++..|+
T Consensus 9 i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 9 IFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555665554
No 287
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=89.26 E-value=4.1 Score=37.80 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchh--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhh
Q 013655 67 SLITSVVFAGMLVGAYSWGIVSDNFGRR--KGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLE 143 (439)
Q Consensus 67 g~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~ 143 (439)
|..-.+..+.++++.+..|.+.-++.|. -.+.++.+..+...+++..+.++|..+++.++.+...... ++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 5555666777888889999998877765 3455566666777777888889999999988888877777 677777888
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------hhHHHHHhHHHHHHHHH
Q 013655 144 FIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-----------WRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 144 ~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-----------~~~~~~~~~~~~~~~~~ 197 (439)
....+.-|..+|+.....- ++-.++.-.+.|..| +..-|.+.+++.++...
T Consensus 354 nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~ 415 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFG 415 (433)
T ss_pred hhhhhhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHH
Confidence 8888888888887655322 233333333444322 23346666666666544
No 288
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=88.67 E-value=2.2 Score=40.95 Aligned_cols=113 Identities=16% Similarity=0.053 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhh--
Q 013655 68 LITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEF-- 144 (439)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~-- 144 (439)
|-..++.+...+.+....++.+|+|-|+.+..+.....++..+....++.+.....+-..|+-.+.. .+.+..++++
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~ 415 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI 415 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence 3445667777788999999999999766666666656666666666777777777777777544433 2222222111
Q ss_pred -------------------cCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 013655 145 -------------------IPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG 180 (439)
Q Consensus 145 -------------------~~~--~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g 180 (439)
..+ ..+|...|+.++...+.+++.....|.+.+.+|
T Consensus 416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 111 224666677888888888877777777777665
No 289
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=88.47 E-value=5.5 Score=35.56 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcchh--HHHHHHHHHHHHHHHHHhh----cc---hHHHHHHHHHHHhhccCcc-h
Q 013655 66 ESLITSVVFAGMLVGAYSWGIVSDNFGRR--KGFLITAIVTSAAGLLSAF----AP---NYYLLLFFRCLVGLGLGGG-P 135 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~G~~~g~~-~ 135 (439)
-|.+.+.+.+..++|+-+..++..|-.+| ..+.+..++.++...+..+ +| +...-+++..+.-.+.|.. |
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48899999999999999998888876654 3455555554444443322 22 2333455666666778888 7
Q ss_pred hhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--c--ccchhHHHHHhHHHHHHHHH
Q 013655 136 VLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM--P--RLGWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 136 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~--~--~~g~~~~~~~~~~~~~~~~~ 197 (439)
..+.+-.++.|++.|...+.++..=.++-..+ +-+.. + ..+-|..|-++.+...++.+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvCl----vLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCL----VLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhh----hheecccccCccccchhhhhhHHHHHHHHH
Confidence 77788889999999988877755433332211 11111 1 12356677777666555533
No 290
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=86.18 E-value=37 Score=33.51 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=51.4
Q ss_pred HHHhhccCcchhhH-HHHhhhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHH
Q 013655 125 CLVGLGLGGGPVLA-SWFLEFIPA-PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLL 195 (439)
Q Consensus 125 ~l~G~~~g~~~~~~-~~~~~~~~~-~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 195 (439)
++.|+........+ ..+.+.+|. ++|...+|-+....++..++...+.+.+.+.+||.....+.-+..++.
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit 346 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT 346 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555553333 566677664 468889999999888888777778899999999998887776665553
No 291
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=85.02 E-value=22 Score=31.39 Aligned_cols=37 Identities=5% Similarity=-0.052 Sum_probs=23.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 013655 361 FITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIF 397 (439)
Q Consensus 361 ~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~ 397 (439)
..-.++..+..+.+-+++.|+..|.+.+.+..+..+.
T Consensus 247 iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 247 IGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 3344555555566667888888887766665555444
No 292
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=81.58 E-value=0.52 Score=43.62 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHH---HHHHh----------hcchHHHHHHHHHHHhhccCc
Q 013655 68 LITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAA---GLLSA----------FAPNYYLLLFFRCLVGLGLGG 133 (439)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~l~G~~~g~ 133 (439)
.+...+.++-.+|..+.++..=+. .+|+..+ ..+.-.+. .+++. +.++-+..++..++.|+..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 356678888889988877643211 2444333 32222221 12221 123445667778899999998
Q ss_pred c-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655 134 G-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL 174 (439)
Q Consensus 134 ~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~ 174 (439)
. .....+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp --HHHH------------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6777888888988999888888888888887777666543
No 293
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=80.98 E-value=49 Score=30.99 Aligned_cols=85 Identities=26% Similarity=0.244 Sum_probs=55.3
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH----HHHHHHH---HHHHHHHhh--cchHHHHHHHHHHHhh
Q 013655 59 WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGF----LITAIVT---SAAGLLSAF--APNYYLLLFFRCLVGL 129 (439)
Q Consensus 59 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~----~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~G~ 129 (439)
.|-+..+.+++.+.+.....+|+...-++.|.--.-+.+ ++|++.- .+..+.+++ .++-+.++++.++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 466778889999999999999988888877754332222 1222211 111112222 3466788888899999
Q ss_pred ccCcc-hhhHHHHhh
Q 013655 130 GLGGG-PVLASWFLE 143 (439)
Q Consensus 130 ~~g~~-~~~~~~~~~ 143 (439)
-.|.- |..+.++..
T Consensus 118 LVG~EiPL~mrml~~ 132 (508)
T COG4262 118 LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHhcchHHHHHHHHH
Confidence 99988 777776655
No 294
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=80.49 E-value=64 Score=32.03 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=49.2
Q ss_pred HHHhhccCcchhhH-HHHhhhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHH
Q 013655 125 CLVGLGLGGGPVLA-SWFLEFIPA-PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLL 196 (439)
Q Consensus 125 ~l~G~~~g~~~~~~-~~~~~~~~~-~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 196 (439)
+..|+.....-..+ ..+.+.+|. +++...+|-++...++-..+...+++.+.+.+||+....+.-+..++..
T Consensus 290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 34455555553333 556666665 4467778888888888777777888999999999998877655555443
No 295
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=78.51 E-value=9.3 Score=35.54 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhHHHH
Q 013655 304 SPELIKSTLLLWLVFFGNAFSYYGLVL 330 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
++...+..+..|..||.....+....-
T Consensus 155 ~~~~ak~sl~fc~lWF~anl~~naALa 181 (416)
T KOG2765|consen 155 ATQTAKLSLFFCPLWFLANLTSNAALA 181 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667778888877666554433
No 296
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.86 E-value=11 Score=38.86 Aligned_cols=75 Identities=12% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHH-HHHHHHHHHHHhhhhcc--hhHHHHHHHHHH
Q 013655 30 VLAYAGMGWISEAMEMMLLSFVGP-AVQSLWHLSPNQESLITSVVFA-GMLVGAYSWGIVSDNFG--RRKGFLITAIVT 104 (439)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~ 104 (439)
++....++..+.......+..++| ++..+||.+.+.+..+.+...+ +.++|.+++|++..|+. .|.+..+.++..
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 445555666666555555555555 6667899999999998865555 56678889999999874 455544444433
No 297
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=76.74 E-value=10 Score=30.62 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Q 013655 115 PNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTIL 167 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i 167 (439)
+++..++...++.|+|.- ...+.+++..+++++.|..+|+-.+-.+++-+.
T Consensus 95 P~~~~~~~S~~~Fg~gll--GisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGLL--GISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred CchHHHHHHHHHHHHHHH--hhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 345555555555554433 345556666788999999999988888876654
No 298
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=75.46 E-value=71 Score=30.36 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH-----
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSLWH-LSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSA----- 106 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~----- 106 (439)
.+..+++....+.-.+.+....+..+++ -|....+.-..+-.....+..++.|...|+..|+|++-..+.+.-+
T Consensus 31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~va 110 (503)
T KOG2601|consen 31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVA 110 (503)
T ss_pred hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHH
Confidence 3445566665555566665555555544 3444444444445556667778889999999999988766554222
Q ss_pred -HHHHHhhc-c-----hHHHHHHHHHHHhhccCcchh----hHHHH--hhhc----CCCchhhHH---HHHHHHHHHHHH
Q 013655 107 -AGLLSAFA-P-----NYYLLLFFRCLVGLGLGGGPV----LASWF--LEFI----PAPNRGFWM---VIFQTFWTVGTI 166 (439)
Q Consensus 107 -~~~~~~~~-~-----~~~~~~~~~~l~G~~~g~~~~----~~~~~--~~~~----~~~~rg~~~---~~~~~~~~~g~~ 166 (439)
+.+...+. + ++..+..+.++.-. .+.... ...++ .||. ..+.+.... +..-..-..-..
T Consensus 111 gglvi~~l~~~~~~~~t~pv~t~~lvLa~~-i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~ 189 (503)
T KOG2601|consen 111 GGLVITLLVHKDLKSATSPVFTVCLVLANL-IAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL 189 (503)
T ss_pred HHHHhhheeecchhcccccHHHHHHHHHHH-HHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence 22222222 2 33333333332211 111111 11111 1221 223333333 333334444567
Q ss_pred HHHHHHHHhhcccchhHHHHHhHHHHHH
Q 013655 167 LEAGIAWLVMPRLGWRWLLGLSAFPSSL 194 (439)
Q Consensus 167 i~~~l~~~l~~~~g~~~~~~~~~~~~~~ 194 (439)
+.|.+.|.+.+..+-|..-...++..++
T Consensus 190 Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 190 LAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred hhhhhhcccceeechhhhhhhhHHHHHH
Confidence 8899999998888877755555544444
No 299
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=74.71 E-value=35 Score=31.62 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=45.3
Q ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeecccc
Q 013655 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEV 435 (439)
Q Consensus 365 i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~ 435 (439)
+.-+...++.+.+++++|-|+++.++..........-. .+.....+......|++.+..+..--++++++
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl-~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~ 138 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL-EPRYETLVPAGLVLGMAAGPIWASKGTYLTPM 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-chhHHhhccHHHhhccccccccccCcceecHH
Confidence 44466667777999999999999888777766544322 22233344556666777777666666665543
No 300
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.46 E-value=15 Score=27.33 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHH
Q 013655 67 SLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITA 101 (439)
Q Consensus 67 g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~ 101 (439)
++-.+.-+++..+.....||+.||| |.++..++..
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ 80 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVF 80 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3344555666777778889999997 4454444333
No 301
>PRK10263 DNA translocase FtsK; Provisional
Probab=74.04 E-value=31 Score=38.09 Aligned_cols=32 Identities=9% Similarity=-0.143 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHhHHHHHH
Q 013655 163 VGTILEAGIAWLVMPRLGWRWLLGLSAFPSSL 194 (439)
Q Consensus 163 ~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~ 194 (439)
.|+++|..+...+...+|.....++..++.++
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLlllLI 173 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVWAA 173 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46666666666666666655544444433333
No 302
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=73.04 E-value=24 Score=33.76 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=67.5
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH---------hhcchHHHHHHHHHHHhhccCcc-
Q 013655 66 ESLITSV-VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS---------AFAPNYYLLLFFRCLVGLGLGGG- 134 (439)
Q Consensus 66 ~g~~~~~-~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~G~~~g~~- 134 (439)
.-++..+ +.+...+|.+.+.++-++= ||...+.. ++-.+..-++ .+..+-+.+++...+.|+..|-.
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v-~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPV-LLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHH-HHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 3444555 7888888877777766653 44433322 2222222111 12345677788888999999988
Q ss_pred hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013655 135 PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW 173 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~ 173 (439)
...+.+..+..+++++-.+-.+.......|...|..++.
T Consensus 362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566677888888888877766677777777666665543
No 303
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=70.40 E-value=41 Score=32.02 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=46.0
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRW 183 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~ 183 (439)
..+.+...-.. ...++..++..++.--|+.|.+.+.-.++|+..-..++.++.|.++|+-
T Consensus 376 y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 376 YAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceee
Confidence 34444433333 5566788899999999999999999999999888888888888766553
No 304
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=69.18 E-value=26 Score=32.23 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=53.5
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013655 107 AGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLV 175 (439)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l 175 (439)
.-....+.++++...+.-+.-|+-.|.. ....--+.+..++++|-.+++....+-++|..++..++-.+
T Consensus 332 ~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 332 LQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3345667889999988889999977776 44455667778889999999999998888888877665443
No 305
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.84 E-value=13 Score=27.76 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 013655 63 PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA 114 (439)
Q Consensus 63 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 114 (439)
++..|-...++.-.+++.++++++..|+..+.+.=.+|..++.++.....+.
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3667888999999999999999999999988887777777777776655544
No 306
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=67.34 E-value=56 Score=32.28 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655 123 FRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 123 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
..++..+..-.. ...++.-++..+|.-=|+.|.+.++..++|+..-..+.-+++|.+.++
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~ 471 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA 471 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence 334444544444 455678889999999999999999999999877666666666655443
No 307
>PRK02237 hypothetical protein; Provisional
Probab=65.40 E-value=22 Score=26.65 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 013655 64 NQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP 115 (439)
Q Consensus 64 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 115 (439)
+..|-+..++.-.+++.++++++..|+..+-+.=.+|..++.++..+..+.|
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 4588899999999999999999999999887777777777776665554443
No 308
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=59.13 E-value=1.2e+02 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch
Q 013655 157 FQTFWTVGTILEAGIAWLVMPRLGW 181 (439)
Q Consensus 157 ~~~~~~~g~~i~~~l~~~l~~~~g~ 181 (439)
.....-++..+|..++..+.+..+.
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~ 191 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF 191 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555556666655564
No 309
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.48 E-value=34 Score=25.62 Aligned_cols=33 Identities=9% Similarity=-0.081 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Q 013655 365 FAEFPGLLLAAAMVDRL-GRKLSMSSMFFCCCIF 397 (439)
Q Consensus 365 i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~ 397 (439)
+.+++-....||+.||+ |.++.-++.+++.+.+
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34444455679999997 5555544444444443
No 310
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=55.80 E-value=1.5e+02 Score=26.56 Aligned_cols=90 Identities=16% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-cchhHHHH----HHHHHHHHHHHHHh-hcc----hHHHHHHHHHHHhhccCcc-hh
Q 013655 68 LITSVVFAGMLVGAYSWGIVSDN-FGRRKGFL----ITAIVTSAAGLLSA-FAP----NYYLLLFFRCLVGLGLGGG-PV 136 (439)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~----~~~~~~~~~~~~~~-~~~----~~~~~~~~~~l~G~~~g~~-~~ 136 (439)
...-++..+..+|.+..|..... +.||+.+. ++.++..+..+... ..+ +...+++.-++.|++.=+. ++
T Consensus 145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V 224 (267)
T PF07672_consen 145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV 224 (267)
T ss_pred HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33445555555666666666654 34555433 33334444433321 222 3555667777777654333 43
Q ss_pred hHHHHhhh--cCCCchhhHHHHH
Q 013655 137 LASWFLEF--IPAPNRGFWMVIF 157 (439)
Q Consensus 137 ~~~~~~~~--~~~~~rg~~~~~~ 157 (439)
.-..-.|. ..|++-|...|+.
T Consensus 225 iL~lPhEyK~~~pk~ig~~Fg~i 247 (267)
T PF07672_consen 225 ILNLPHEYKGYNPKKIGIQFGLI 247 (267)
T ss_pred HhcChhhhcCCCcceehhHHHHH
Confidence 33222232 3445555555543
No 311
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=55.41 E-value=2.8e+02 Score=29.41 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 159 TFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 159 ~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
.+..++.++...++.++....+|..++++.++++
T Consensus 108 ~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILA 141 (810)
T TIGR00844 108 PVMTSGWLVIALFVWILVPGLNFPASLLMGACIT 141 (810)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhc
Confidence 3334444555555555544567776666665544
No 312
>COG1288 Predicted membrane protein [Function unknown]
Probab=55.34 E-value=1.7e+02 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHHHH-hhcccchhHHHHHhHHHHHHHHH
Q 013655 166 ILEAGIAWL-VMPRLGWRWLLGLSAFPSSLLLL 197 (439)
Q Consensus 166 ~i~~~l~~~-l~~~~g~~~~~~~~~~~~~~~~~ 197 (439)
.+++-+++. +.+..+||...++......+..+
T Consensus 202 ~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~ 234 (481)
T COG1288 202 VIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYV 234 (481)
T ss_pred HHHhhhcCCcccccchHHHHHHHHHHHHHHHHH
Confidence 344444432 34556899988877665554443
No 313
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=52.00 E-value=1.6e+02 Score=29.49 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=12.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhh
Q 013655 360 VFITSFAEFPGLLLAAAMVDRLG 382 (439)
Q Consensus 360 ~~~~~i~~~~g~~~~g~l~dr~g 382 (439)
...+.+.+.++...++.+-..++
T Consensus 303 i~~y~~~~~iaGy~S~~~yk~~~ 325 (521)
T PF02990_consen 303 IILYALTSFIAGYVSARLYKSFG 325 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcC
Confidence 34444555555555555555554
No 314
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=51.15 E-value=99 Score=31.44 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred CCchhhHHHHhhhhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhcc-------------------c-c-----
Q 013655 354 DINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMSSMFFCCCIFLVPLLFQQ-------------------P-K----- 407 (439)
Q Consensus 354 ~~~~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~-------------------~-~----- 407 (439)
..+.-.............+++++++|- +||-+++.++.++..++..++.... . .
T Consensus 73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~ 152 (571)
T KOG1237|consen 73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL 152 (571)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence 344455555556666777899999997 4899998888888877765554210 0 0
Q ss_pred chhhhHHHHHHhhhhheeeeeeeecccccc
Q 013655 408 GLTTGLLFGARICITVTFTVVYVYAPEVSH 437 (439)
Q Consensus 408 ~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p 437 (439)
..+...+.+..+|.++.-|...++-++-++
T Consensus 153 ~~~~~~l~lia~G~gg~r~~~~~fGadQfd 182 (571)
T KOG1237|consen 153 AVLYGALYLIALGAGGIRPCLLAFGADQFD 182 (571)
T ss_pred HHHHHHHHHheeccCCCCCcchhhcccccC
Confidence 123334455556677777877777777665
No 315
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=50.85 E-value=60 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcch
Q 013655 70 TSVVFAGMLVGAYSWGIVSDNFGR 93 (439)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~dr~G~ 93 (439)
+.-|.+++.+++.+.|++.||..+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 356778889999999999999875
No 316
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=48.49 E-value=1.5e+02 Score=26.92 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=20.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhccccc
Q 013655 376 AMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKG 408 (439)
Q Consensus 376 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 408 (439)
++-||+.|-....++.+.+++........+-+|
T Consensus 119 flkErls~~Q~iAV~lA~~GV~~~~~~~g~lpw 151 (293)
T COG2962 119 FLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPW 151 (293)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 356888887777777777776655544433333
No 317
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=45.08 E-value=37 Score=30.29 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHh---------hhhcchhHHH
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIV---------SDNFGRRKGF 97 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l---------~dr~G~r~~~ 97 (439)
..++.+.+-.....+..++-.+.++.|.++.....++-...+..++..++.|.. .||+|||+..
T Consensus 22 yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 22 YGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred echhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 345555555555555555556677889999999999999999999999988754 4589988753
No 318
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=43.14 E-value=2e+02 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=13.4
Q ss_pred hhcchHHHHHHHHHHHhhccCcc
Q 013655 112 AFAPNYYLLLFFRCLVGLGLGGG 134 (439)
Q Consensus 112 ~~~~~~~~~~~~~~l~G~~~g~~ 134 (439)
...++.|.+.+..++.+++.++.
T Consensus 18 l~~~~~~l~~~~~~~~~F~~~ml 40 (284)
T PF12805_consen 18 LLFPYPWLLILVLALLTFFFGML 40 (284)
T ss_pred HHhhccHHHHHHHHHHHHHHHHH
Confidence 33455666666666666655544
No 319
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.57 E-value=2.5e+02 Score=31.63 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 013655 364 SFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPL 401 (439)
Q Consensus 364 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 401 (439)
..++++|.++...+...+|.--..++.+++.+++++++
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIGLiLl 178 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLF 178 (1355)
T ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46888999998888888887666555555554444443
No 320
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=37.10 E-value=1.4e+02 Score=24.11 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhH
Q 013655 70 TSVVFAGMLVGAYSWGIVSDNFGRRK 95 (439)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~dr~G~r~ 95 (439)
+.-+.+++.+.+.+.|++.+|..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 34667888899999999999987763
No 321
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=36.45 E-value=3.4e+02 Score=24.88 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh---cchhHHHHHHHHHHHHHHHH
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDN---FGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~G~r~~~~~~~~~~~~~~~~ 110 (439)
+..++++.-+..+..+.-+..+.+..+......++..+.... .++.+-.++ ||.||.=+++.+..++..+.
T Consensus 30 L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~------~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~ 103 (296)
T COG1230 30 LNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAI------KLARRPATKRFTFGYKRLEILAAFLNALLLIV 103 (296)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHH------HHhcCCCCCCCCccHhHHHHHHHHHHHHHHHH
Confidence 333344433334444444556667777666666654443322 222333333 78888766666665555444
Q ss_pred H
Q 013655 111 S 111 (439)
Q Consensus 111 ~ 111 (439)
.
T Consensus 104 ~ 104 (296)
T COG1230 104 V 104 (296)
T ss_pred H
Confidence 3
No 322
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.03 E-value=2e+02 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHHhhhh-cchhHHH
Q 013655 81 AYSWGIVSDN-FGRRKGF 97 (439)
Q Consensus 81 ~~~~g~l~dr-~G~r~~~ 97 (439)
+.+.|...|+ ++-++.+
T Consensus 59 G~~lG~WLD~~~~t~~~~ 76 (100)
T TIGR02230 59 GVAVGIWLDRHYPSPFSW 76 (100)
T ss_pred HHHHHHHHHhhcCCCcHH
Confidence 3344444553 5544433
No 323
>PRK03612 spermidine synthase; Provisional
Probab=33.94 E-value=5e+02 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013655 66 ESLITSVVFAGMLVGAY 82 (439)
Q Consensus 66 ~g~~~~~~~~~~~~~~~ 82 (439)
++..+....+|+.++..
T Consensus 56 i~~fl~glalGs~l~~~ 72 (521)
T PRK03612 56 IGLMLFAMGVGALLSKY 72 (521)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333444444333
No 324
>PHA03237 envelope glycoprotein M; Provisional
Probab=32.87 E-value=4.4e+02 Score=25.58 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.3
Q ss_pred hhHHHHhhhc
Q 013655 136 VLASWFLEFI 145 (439)
Q Consensus 136 ~~~~~~~~~~ 145 (439)
..+-++.|.+
T Consensus 271 iiyliv~E~v 280 (424)
T PHA03237 271 LMYLLIVEFV 280 (424)
T ss_pred HHHHHHHHHH
Confidence 3334444544
No 325
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=32.17 E-value=4.5e+02 Score=27.62 Aligned_cols=53 Identities=19% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHHhhhh----cchhHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHhhccCcc
Q 013655 82 YSWGIVSDN----FGRRKGFLITAIVTSAAGLLSAF-APNYYLLLFFRCLVGLGLGGG 134 (439)
Q Consensus 82 ~~~g~l~dr----~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~ 134 (439)
.+++-++|. -||.+-++++.++++++.+...+ .+..|.+....++.+++.++.
T Consensus 41 ~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ml 98 (704)
T TIGR01666 41 IIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIML 98 (704)
T ss_pred HHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 344567774 34556666777666666655543 456666666666666655443
No 326
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.13 E-value=2.2e+02 Score=21.28 Aligned_cols=32 Identities=9% Similarity=0.167 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhcccc----hhHHHHHhHHHH
Q 013655 161 WTVGTILEAGIAWLVMPRLG----WRWLLGLSAFPS 192 (439)
Q Consensus 161 ~~~g~~i~~~l~~~l~~~~g----~~~~~~~~~~~~ 192 (439)
..+..++|..++-|+=+.++ |...+++.++..
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 33444455555556555554 444555544443
No 327
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=31.92 E-value=5e+02 Score=27.30 Aligned_cols=53 Identities=26% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHhhhhc----chhHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHhhccCcc
Q 013655 82 YSWGIVSDNF----GRRKGFLITAIVTSAAGLLSAF-APNYYLLLFFRCLVGLGLGGG 134 (439)
Q Consensus 82 ~~~g~l~dr~----G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~ 134 (439)
.+++-++|.= ||.+-++++.++++++.+...+ .+..|.+....++.+++.++.
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ml 98 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILL 98 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4445567743 4556677777777666665554 455666666666666655544
No 328
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=31.05 E-value=2e+02 Score=21.70 Aligned_cols=50 Identities=14% Similarity=-0.127 Sum_probs=35.9
Q ss_pred CCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 013655 354 DINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF 403 (439)
Q Consensus 354 ~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 403 (439)
+..+-....++-.-++.+++.++.+|+....+-=.++..++.++...+.+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 34466777888888999999999999987655555566666555554443
No 329
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.02 E-value=54 Score=24.38 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=38.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655 62 SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 62 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
+....|-...++.-.+++.++.+++..|+.-+-+-=.+|..++.++...+.+
T Consensus 53 ~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 53 PAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred CchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEe
Confidence 3455677888888889999999999999987777666666666555444333
No 330
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=30.96 E-value=5.2e+02 Score=25.36 Aligned_cols=99 Identities=13% Similarity=-0.033 Sum_probs=61.4
Q ss_pred HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHhhcc
Q 013655 55 VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFA---PNYYLLLFFRCLVGLGL 131 (439)
Q Consensus 55 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~ 131 (439)
+....+++.++...+.+.-.+...++.++--....+.|-|-....+.....++-...... +.....+.+.+..|+..
T Consensus 40 vg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~ 119 (451)
T COG2233 40 VGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVY 119 (451)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 347789999999999999999999999987764444555655544444444443333222 22455555555555554
Q ss_pred CcchhhHH-HHhhhcCCCchhhH
Q 013655 132 GGGPVLAS-WFLEFIPAPNRGFW 153 (439)
Q Consensus 132 g~~~~~~~-~~~~~~~~~~rg~~ 153 (439)
-....... ++.+.+||-.-|..
T Consensus 120 ~li~~~~~~~l~rlfPPvVtG~V 142 (451)
T COG2233 120 FLISPIVKIRLARLFPPVVTGPV 142 (451)
T ss_pred HHHHHHHHHHHHHhCCCceEEeE
Confidence 44433333 66777777665544
No 331
>COG2119 Predicted membrane protein [Function unknown]
Probab=30.09 E-value=3.4e+02 Score=22.88 Aligned_cols=54 Identities=9% Similarity=-0.013 Sum_probs=34.6
Q ss_pred HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 013655 55 VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG 108 (439)
Q Consensus 55 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 108 (439)
+..+++......--......+...++-+.+.++++|+..|++-..+.+++.+..
T Consensus 125 LaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 125 LAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 445555533322223344556777788889999999999988777666554433
No 332
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=29.96 E-value=2.1e+02 Score=27.27 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=4.6
Q ss_pred hhHHHHhhhc
Q 013655 136 VLASWFLEFI 145 (439)
Q Consensus 136 ~~~~~~~~~~ 145 (439)
..+-++.|.+
T Consensus 254 ii~~i~~E~~ 263 (374)
T PF01528_consen 254 IIYLIVIEVV 263 (374)
T ss_pred HHHHHHHHHH
Confidence 3444445544
No 333
>PTZ00101 rhomboid-1 protease; Provisional
Probab=29.13 E-value=3.5e+02 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHH
Q 013655 75 AGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 75 ~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~ 110 (439)
+...+.....|...+| +|++|..++-.+....+.++
T Consensus 119 l~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~ 155 (278)
T PTZ00101 119 FFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNIL 155 (278)
T ss_pred HHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 4455556666776665 79888775444444444433
No 334
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=28.95 E-value=1.6e+02 Score=18.82 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHH
Q 013655 72 VVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTS 105 (439)
Q Consensus 72 ~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~ 105 (439)
...+...+.....|+..|+ ++.++...+..++.+
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG 42 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLG 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3444555566677777776 566555444433333
No 335
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=28.32 E-value=3.9e+02 Score=24.32 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013655 120 LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWL 174 (439)
Q Consensus 120 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~ 174 (439)
.-..|.+.|+-.-...+.++++.-.+|.+++-...--.....++..++.|.++-.
T Consensus 22 ~~~lr~~~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~ 76 (287)
T PF07760_consen 22 IPPLRVILGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLL 76 (287)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666554445667777788886544322222333333334444444433
No 336
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.57 E-value=1.8e+02 Score=19.01 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhcccCC
Q 013655 163 VGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPES 205 (439)
Q Consensus 163 ~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (439)
+|..++...+......+++.....+..+..++..++...+|++
T Consensus 13 l~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 13 LGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444444444445677777666666666666655555544
No 337
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=26.97 E-value=2.4e+02 Score=20.30 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhcch-------hHHHHHHHHHHHHHHHHHhhcch
Q 013655 78 LVGAYSWGIVSDNFGR-------RKGFLITAIVTSAAGLLSAFAPN 116 (439)
Q Consensus 78 ~~~~~~~g~l~dr~G~-------r~~~~~~~~~~~~~~~~~~~~~~ 116 (439)
..+.+.++++.+|..+ ++.+.++.++...+.+++++..+
T Consensus 32 ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 32 TAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777776654 56666666666666666665443
No 338
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=25.83 E-value=6e+02 Score=24.44 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=57.7
Q ss_pred HHHHh-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHhh
Q 013655 52 GPAVQ-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF-APNYYLLLFFRCLVGL 129 (439)
Q Consensus 52 ~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~ 129 (439)
.|.+. +..|++.++...+.....+...++.++-.+-.-++|.|..+..+.....+....... ...+.......++.|+
T Consensus 15 ~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gi 94 (406)
T TIGR03173 15 VPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGL 94 (406)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34444 446999998888888888888998888754443577776665444433332222211 1234444444455554
Q ss_pred ccCcchhhHHHHhhhcCCCchhh
Q 013655 130 GLGGGPVLASWFLEFIPAPNRGF 152 (439)
Q Consensus 130 ~~g~~~~~~~~~~~~~~~~~rg~ 152 (439)
-.-........+.+.+|+.-.|.
T Consensus 95 i~illg~~~~~l~~~iPp~v~G~ 117 (406)
T TIGR03173 95 FVILLAPFFSKLVRFFPPVVTGT 117 (406)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHH
Confidence 33322223456677888755443
No 339
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=24.86 E-value=6.6e+02 Score=24.54 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHhhhhcchhHH-----HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHH
Q 013655 82 YSWGIVSDNFGRRKG-----FLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVI 156 (439)
Q Consensus 82 ~~~g~l~dr~G~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~ 156 (439)
+.+=++.+.+.++++ +++|+.+...-.++.+++.+.....+-. +...+. ......++.......+||..++.
T Consensus 309 F~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYl-iAa~a~--i~Li~~Y~~~vl~~~k~~~~~~~ 385 (430)
T PF06123_consen 309 FLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYL-IAALAC--IGLISLYLSSVLKSWKRGLIFAG 385 (430)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH-HHHHHH--HHHHHHHHHHHHhcchHHHHHHH
Confidence 333345555554443 5667766666667777776543222221 111111 12233444555556666655433
No 340
>COG4769 Predicted membrane protein [Function unknown]
Probab=24.08 E-value=1.2e+02 Score=24.81 Aligned_cols=50 Identities=20% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 73 VFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 73 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
+.....+.+.+.-++..++|+|..-.+|...++ ++.+|..++.+.+++.+
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mG------aF~hNl~QLivas~Lv~ 131 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGISVMG------AFTHNLGQLIVASFLVF 131 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeehhhHH------HHHHhHHHHHHHHHHHh
Confidence 344455556666778888888877444433322 35678888888887665
No 341
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=24.06 E-value=2.1e+02 Score=21.53 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=19.1
Q ss_pred hcccchhHHHHHhHHHHHHH-HHHHhcccCC
Q 013655 176 MPRLGWRWLLGLSAFPSSLL-LLLYSVTPES 205 (439)
Q Consensus 176 ~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 205 (439)
.+..+|+.++++...++++. .+.+.+.|+.
T Consensus 54 ~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~ 84 (105)
T PF10183_consen 54 RDWEGWELPFFFGFSGSLVFGGVFLAYKPDT 84 (105)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34567999888766555544 4445666765
No 342
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=23.82 E-value=2e+02 Score=22.92 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=18.0
Q ss_pred HhhhcCCCchhhHHHHHHHHHHHH
Q 013655 141 FLEFIPAPNRGFWMVIFQTFWTVG 164 (439)
Q Consensus 141 ~~~~~~~~~rg~~~~~~~~~~~~g 164 (439)
+.+++|+..|....+.++......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 578999999988887766554443
No 343
>PRK02237 hypothetical protein; Provisional
Probab=23.72 E-value=3.3e+02 Score=20.62 Aligned_cols=48 Identities=13% Similarity=-0.095 Sum_probs=34.4
Q ss_pred chhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 013655 356 NYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLF 403 (439)
Q Consensus 356 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 403 (439)
.+-....++-.-++.+++.++.+|+...-+-=.++..++.++...+.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 466677788888999999999999986655555566666565554433
No 344
>PHA03242 envelope glycoprotein M; Provisional
Probab=22.49 E-value=5.9e+02 Score=24.74 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=4.7
Q ss_pred hhhHHHHHHHH
Q 013655 150 RGFWMVIFQTF 160 (439)
Q Consensus 150 rg~~~~~~~~~ 160 (439)
-|...|..-..
T Consensus 286 ~G~~lG~lia~ 296 (428)
T PHA03242 286 PGPHLGALVAA 296 (428)
T ss_pred ccchHHHHHHH
Confidence 34444444333
No 345
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=22.16 E-value=2.1e+02 Score=17.87 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHhhh
Q 013655 365 FAEFPGLLLAAAMVDRLGR 383 (439)
Q Consensus 365 i~~~~g~~~~g~l~dr~gr 383 (439)
+.+++|+++++++.+.++.
T Consensus 2 i~GiiGa~vGg~l~~~lg~ 20 (48)
T PF04226_consen 2 ILGIIGAFVGGWLFGLLGI 20 (48)
T ss_pred eeehHHHHHHHHHHHHhcc
Confidence 3567889999999888876
No 346
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=22.05 E-value=8e+02 Score=24.49 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHhhccCcchhhH-HHHhhhcCC-CchhhHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 013655 125 CLVGLGLGGGPVLA-SWFLEFIPA-PNRGFWMVIFQTFWTVG-TILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY 199 (439)
Q Consensus 125 ~l~G~~~g~~~~~~-~~~~~~~~~-~~rg~~~~~~~~~~~~g-~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 199 (439)
+..|++.......+ +-+.+.+|. +++...+|-++...++- .++.-.+++-++...||-..-.+.-++.++..+++
T Consensus 292 l~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lF 369 (509)
T COG3202 292 LAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLF 369 (509)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555553333 556666765 34777888888777776 55566667888889999988777776666664443
No 347
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=21.91 E-value=4.8e+02 Score=21.92 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 013655 70 TSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVG 128 (439)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 128 (439)
.....+...+++++.-.+..|.++|-++.+..++.++..++++ +.|...+..++.|
T Consensus 34 ~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G---~~~~~~~~~iv~g 89 (186)
T PF09605_consen 34 LFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG---HGWPMLIVCIVGG 89 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Confidence 3444566677888888899999999988877777766655544 2344444444333
No 348
>PF07556 DUF1538: Protein of unknown function (DUF1538); InterPro: IPR011435 This family of protenis of unknown function contains several conserved glycines and phenylalanines.
Probab=21.48 E-value=5.4e+02 Score=22.28 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHhhccCcc-hhhHHHH--hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 013655 115 PNYYLLLFFRCLVGLGLGGG-PVLASWF--LEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLS 188 (439)
Q Consensus 115 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~--~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~ 188 (439)
.+.|.++...++.|+..... |....+. .|.....+..+..=....+.++|..++--+.-.+ +||...+++.
T Consensus 60 ~~~~~l~~~gf~lGf~~t~AEPal~vL~~qve~vs~G~i~~~~l~~~vaiGVg~~i~lg~lRIi---~g~~l~~~l~ 133 (212)
T PF07556_consen 60 GSLWLLLLFGFVLGFLVTIAEPALRVLADQVEEVSGGSIPKSVLILAVAIGVGIFIALGMLRII---FGIPLWYFLI 133 (212)
T ss_pred CCcEEeHHHHHHHHHHHHhhCcHHHHHHHHHHHhCcCCcchhHHHHHHHHHHHHHHHHHHHHHH---hCCcHHHHHH
Confidence 46777888888999988887 6655443 3333333333333334444444444443333333 3565544443
No 349
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.46 E-value=2e+02 Score=20.02 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHhhcchH
Q 013655 88 SDNFGRRKGFLITAIVTSAAGLLSAFAPNY 117 (439)
Q Consensus 88 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~ 117 (439)
-|+-.|++-+.+.+.+-..++++..+....
T Consensus 11 ~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 11 QDQRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667777777777777777766665443
No 350
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=20.48 E-value=1.4e+02 Score=20.01 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhhccCcchhhHHHHhhhcCCCch
Q 013655 116 NYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNR 150 (439)
Q Consensus 116 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r 150 (439)
++..+.......++..+..-....+++|..+.+++
T Consensus 27 ~it~F~~n~~~g~i~i~I~l~l~G~isE~i~~~Kg 61 (63)
T PF06341_consen 27 NITAFLINQIAGLISIGITLFLAGLISEFISKQKG 61 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33344444444444444444455667777766443
Done!