Query 013655
Match_columns 439
No_of_seqs 391 out of 1518
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:38:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.6E-31 5.4E-36 259.3 28.3 325 25-439 22-379 (438)
2 4gc0_A D-xylose-proton symport 100.0 1.8E-31 6E-36 262.9 23.4 355 25-439 8-402 (491)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.9E-31 6.6E-36 259.6 22.2 344 24-439 23-378 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.2E-26 4.1E-31 228.4 24.7 164 37-200 21-194 (491)
5 2gfp_A EMRD, multidrug resista 99.9 4.1E-28 1.4E-32 230.4 11.6 312 32-437 3-321 (375)
6 2cfq_A Lactose permease; trans 99.9 5.2E-24 1.8E-28 205.0 6.3 317 41-438 19-343 (417)
7 2xut_A Proton/peptide symporte 99.9 4.4E-22 1.5E-26 197.4 18.2 163 39-201 22-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 6.2E-14 2.1E-18 135.8 19.4 170 33-202 256-433 (451)
9 3o7q_A L-fucose-proton symport 99.5 5.3E-13 1.8E-17 128.7 18.6 153 46-201 275-431 (438)
10 2cfq_A Lactose permease; trans 99.5 2.1E-13 7E-18 130.9 15.4 144 63-206 258-404 (417)
11 4gc0_A D-xylose-proton symport 99.4 4.1E-12 1.4E-16 124.5 17.1 173 34-206 282-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.2 2.5E-11 8.4E-16 118.9 11.5 152 49-201 303-470 (491)
13 2gfp_A EMRD, multidrug resista 99.1 2.1E-11 7.2E-16 115.0 1.1 155 33-190 203-364 (375)
14 2xut_A Proton/peptide symporte 98.7 1.1E-08 3.7E-13 100.9 5.4 137 65-201 336-501 (524)
15 2g9p_A Antimicrobial peptide l 53.1 9 0.00031 18.6 1.8 14 373-386 2-15 (26)
16 4dve_A Biotin transporter BIOY 23.5 1.6E+02 0.0055 23.9 5.8 25 70-94 99-123 (198)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-31 Score=259.26 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=251.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVT 104 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 104 (439)
+.++..+..+++.++..++......+..|.+.+++|+|..+.|++.+++.++..++++++|+++||+|||++++.+.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 34455566667777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-ccc
Q 013655 105 SAAGLLS---AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PRL 179 (439)
Q Consensus 105 ~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~-~~~ 179 (439)
+++.++. .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|.+++++. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998 88899999999999999999988 778899999999999999999999999999999999999988 555
Q ss_pred c-------------------------hhHHHHHhHHHHHHHHHHHhcc--cCCchhhhhccchHHHHHHHHHHHHHhCCC
Q 013655 180 G-------------------------WRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGTK 232 (439)
Q Consensus 180 g-------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (439)
+ ||..|++.+++.++..++.++. ||+++. ++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~----------------- 241 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD----------------- 241 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-----------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-----------------
Confidence 4 9999988777666655544433 322110 0000
Q ss_pred CCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHH
Q 013655 233 LPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTL 312 (439)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (439)
++ .+....+++++++++..+...
T Consensus 242 -----------------------------------~~----------------------~~~~~~~~~~~~~~~~~~~~~ 264 (438)
T 3o7q_A 242 -----------------------------------AK----------------------QGSFSASLSRLARIRHWRWAV 264 (438)
T ss_dssp -----------------------------------SS----------------------TTSHHHHHHHHTTCSHHHHHH
T ss_pred -----------------------------------cc----------------------ccchhhhHHHHHhChHHHHHH
Confidence 00 000111556666654444333
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHh-hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 013655 313 LLWLVFFGNAFSYYGLVLLTTEL-NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMF 391 (439)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~ 391 (439)
+. .++....++....+.+.+ ..+. .|.+...++...+...++.++++++.|+++||+|||+.+..+.
T Consensus 265 ~~---~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 265 LA---QFCYVGAQTACWSYLIRYAVEEI---------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHS---------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHhhhcc---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33 233333444455556666 4332 2466666788888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 392 FCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
++.+++.+.+.+.++.+. ....++.+++.+..+|..+++..|.+|++
T Consensus 333 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 333 LIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 888888777776655443 44457778888888898888888888863
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.98 E-value=1.8e-31 Score=262.92 Aligned_cols=355 Identities=20% Similarity=0.275 Sum_probs=247.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------CchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 013655 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL--------SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG 96 (439)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~ 96 (439)
++.+.+.++..++.+..+++...++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666666777788888888888888888777632 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------------------hcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHH
Q 013655 97 FLITAIVTSAAGLLSA------------------FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 157 (439)
Q Consensus 97 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~ 157 (439)
++++.+++.++.++.+ ++++++.++++|++.|++.|.. +....++.|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999887 4789999999999999999998 78889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--------cchhHHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHh
Q 013655 158 QTFWTVGTILEAGIAWLVMPR--------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKIN 229 (439)
Q Consensus 158 ~~~~~~g~~i~~~l~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (439)
+.+..+|.++++.++..+... .+||..+.+..++.++..+..+++||+|++...+++.+++.+.+++....+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999998888776532 358888888888888888888899999999999999888888776654321
Q ss_pred CCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHH
Q 013655 230 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIK 309 (439)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (439)
..+ ++..+.+ +..+++++ .......++.+ +
T Consensus 248 ~~~-----------~~~~~~~--------------------~~~~~~~~-----------------~~~~~~~~~~~--~ 277 (491)
T 4gc0_A 248 LAT-----------QAVQEIK--------------------HSLDHGRK-----------------TGGRLLMFGVG--V 277 (491)
T ss_dssp HHH-----------HHHHHHH--------------------HHHHHHHH-----------------HTTHHHHSCCT--H
T ss_pred hhH-----------HHHHHHH--------------------HHHHhhhh-----------------hhhHHHHhccc--H
Confidence 100 0000000 00000000 00111122211 1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHH
Q 013655 310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 389 (439)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~ 389 (439)
.........+.....++....+.+.+.... +.+...........++..+++.+++++++||+|||+.+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTL----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhc----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 122222223333333344444444444221 1333334556667788899999999999999999999988
Q ss_pred HHHHHHHHHHHHhh--c-c-ccchhhhHHHHHHhh-hhheeeeeeeeccccccCC
Q 013655 390 MFFCCCIFLVPLLF--Q-Q-PKGLTTGLLFGARIC-ITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 390 ~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~e~~p~~ 439 (439)
+...++++++.+.. . . +.....+..++...+ ..+..|+.+.+.+|++|++
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~ 402 (491)
T 4gc0_A 348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence 88887776665542 1 1 112222222222222 2334577889999999975
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.98 E-value=1.9e-31 Score=259.60 Aligned_cols=344 Identities=16% Similarity=0.175 Sum_probs=256.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Q 013655 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (439)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 103 (439)
++.++..+....+..+...+......+..|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345566777777888888888888899999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013655 104 TSAAGLLSAF----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 178 (439)
Q Consensus 104 ~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~ 178 (439)
.+++.++.++ +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 77889999999999999999999999999999999999998888
Q ss_pred cc-hhHHHHHhHHHHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCC
Q 013655 179 LG-WRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 256 (439)
Q Consensus 179 ~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (439)
.| ||..|++.+++.++..+ ..+.+||+|+....+...+. ..+
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~--------------- 225 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------------------KND--------------- 225 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------------------CCC---------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------------------ccc---------------
Confidence 98 99999998887776544 45667776532110000000 000
Q ss_pred CCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 013655 257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 336 (439)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (439)
.. + + .+++++.+ ... +....+.+++++.. +...+..++....++....+.|.+.
T Consensus 226 -----~~----~-~--~~~~~~~~---------~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 226 -----YP----D-D--YNEKAEQE---------LTA--KQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp ----------------------------------CC--THHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred -----cc----c-c--chhhhhcc---------ccc--ccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 00000000 000 00023455554433 3333444445555666667777777
Q ss_pred cCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHh--hhHHHHHHHHHHHH-HHHHHHhhcc--ccchhh
Q 013655 337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMSSMFFCCC-IFLVPLLFQQ--PKGLTT 411 (439)
Q Consensus 337 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~ 411 (439)
.+. .|.+....+...+...++.++++++.|++.||+ |||+.+..+..+.. ++++.+.+.. +.+...
T Consensus 280 ~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 280 KEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp TTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 441 346666668888888999999999999999999 99998887776666 5555555443 344555
Q ss_pred hHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 412 GLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 412 ~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
+..++.|++.+...+....+..|.+|++
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchh
Confidence 6677788888888888888999999874
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=1.2e-26 Score=228.43 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhh-----cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHH
Q 013655 37 GWISEAMEMMLL-SFVGPAVQSL-----WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 37 ~~~~~~~~~~~~-~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~ 109 (439)
..+...+..+.. ....+++.++ +|.|..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 333333333333 3444555555 99999999999999999999999999999999 8999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 013655 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186 (439)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~ 186 (439)
+.+++++++.++++|++.|++.+.. +...+++.|++|+++ |+.++++++.+.++|..++|.+++++.+..|||..|+
T Consensus 101 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp HHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999988 778899999999988 7778888999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh
Q 013655 187 LSAFPSSLLLLLYS 200 (439)
Q Consensus 187 ~~~~~~~~~~~~~~ 200 (439)
+.++..++..+..+
T Consensus 181 ~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 181 LAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98777766655443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=4.1e-28 Score=230.43 Aligned_cols=312 Identities=13% Similarity=0.030 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013655 32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS 111 (439)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~ 111 (439)
..+++..+...+......+..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34555667777788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHH
Q 013655 112 AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAF 190 (439)
Q Consensus 112 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~ 190 (439)
.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..|||..|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 77789999999999999999999999999999999999999998999999998888
Q ss_pred HHHHHHH-HHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhccc
Q 013655 191 PSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARD 269 (439)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (439)
..++..+ ..+.+||+++...++ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~------------------------------------- 187 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVDAPR------------------TR------------------------------------- 187 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTTCCC------------------CC-------------------------------------
T ss_pred HHHHHHHHHHHHCcccCCCCccc------------------cc-------------------------------------
Confidence 7777655 445566653210000 00
Q ss_pred CCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCccccccccc
Q 013655 270 EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS 349 (439)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (439)
. ..+++++++++.. +...+..++....++....+.|.+..+ ..
T Consensus 188 ------------~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 230 (375)
T 2gfp_A 188 ------------L-------------LTSYKTLFGNSGF---NCYLLMLIGGLAGIAAFEACSGVLMGA---------VL 230 (375)
T ss_dssp ------------T-------------TTCSTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSCSSHH---------HH
T ss_pred ------------H-------------HHHHHHHhcCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hh
Confidence 0 0012223333322 222233333333444444444544322 12
Q ss_pred CCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHH--HHhh--ccccchhhhHHHHHHhhhhhe
Q 013655 350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC-CCIFLV--PLLF--QQPKGLTTGLLFGARICITVT 424 (439)
Q Consensus 350 g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~ 424 (439)
|.+....+.......++.++++++.+++.||++++. ..+..+ ...+.. .... .++.+...+..++.+++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 244455577788888889999999999999998832 222222 222222 1111 123444556677788888888
Q ss_pred eeeeeeecccccc
Q 013655 425 FTVVYVYAPEVSH 437 (439)
Q Consensus 425 ~~~~~~~~~e~~p 437 (439)
.+...++..|.+|
T Consensus 309 ~~~~~~~~~~~~p 321 (375)
T 2gfp_A 309 FPLATSGAMEPFP 321 (375)
T ss_dssp SSTTHHHHHTHHH
T ss_pred hHHHHHHHHHhCC
Confidence 8888888888877
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=5.2e-24 Score=205.04 Aligned_cols=317 Identities=14% Similarity=0.061 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH---HHHhhcch
Q 013655 41 EAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG---LLSAFAPN 116 (439)
Q Consensus 41 ~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~---~~~~~~~~ 116 (439)
.........++.|. +.+++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+.+++. ....+.+.
T Consensus 19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (417)
T 2cfq_A 19 YFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL 98 (417)
T ss_dssp HHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445554 556799999999999999999999999999999999999999998887665422 11122221
Q ss_pred HH-HHHHHHHHHhhccCcc-hhhHHHHhhhcCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 117 YY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 117 ~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
.. .+...+++.|++.+.. +...+...++.++ ++++...|....+..+|..++|.+++++.+ .+|+..|++.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 99 LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 11 1334555666555543 2223333333332 456777888888889999999999999887 58999998777665
Q ss_pred HHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCchhhhcccCCc
Q 013655 193 SLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDS 272 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (439)
++..+..++.+++++. +.+.++ ++ + .
T Consensus 178 ~~~~~~~~~~~~~~~~---~~~~~~------------~~----------------~--------------------~--- 203 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPS---SATVAN------------AV----------------G--------------------A--- 203 (417)
T ss_dssp TTHHHHSCSSCCCCSC---SSCSSS------------SS----------------S--------------------S---
T ss_pred HHHHHHHHHcCccccc---cccccc------------cc----------------c--------------------c---
Confidence 5444444444332210 000000 00 0 0
Q ss_pred hhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccccccCCC
Q 013655 273 ISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKS 352 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 352 (439)
+.+ +.....++++++++..+...+..+ .....++....+.|.+..+..+ ..+.+
T Consensus 204 -----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 257 (417)
T 2cfq_A 204 -----NHS------------AFSLKLALELFRQPKLWFLSLYVI---GVSCTYDVFDQQFANFFTSFFA------TGEQG 257 (417)
T ss_dssp -----CCC------------CCCHHHHHHHTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSS------SHHHH
T ss_pred -----ccc------------cccHHHHHHHhcCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHh------ccCCC
Confidence 000 000113445555443333332211 1112222222234433321100 00011
Q ss_pred CCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhhhheeeeeeeec
Q 013655 353 RDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYA 432 (439)
Q Consensus 353 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 432 (439)
....+...++..++.+++.++.++++||+|||+++..+..+.++..+.+.+.++.+...+..++.+++.+...+..+.++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11225566677778889999999999999999999888888877766666555544444445555555555555567788
Q ss_pred cccccC
Q 013655 433 PEVSHR 438 (439)
Q Consensus 433 ~e~~p~ 438 (439)
+|.+|+
T Consensus 338 ~~~~p~ 343 (417)
T 2cfq_A 338 TSQFEV 343 (417)
T ss_dssp HHHSCH
T ss_pred HHHCCH
Confidence 888885
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=4.4e-22 Score=197.43 Aligned_cols=163 Identities=14% Similarity=0.178 Sum_probs=140.7
Q ss_pred HHHHHHHHHH-HHHHHHHhhhcC------CCchhhHHHHHHHHHHHHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHHH
Q 013655 39 ISEAMEMMLL-SFVGPAVQSLWH------LSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 39 ~~~~~~~~~~-~~~~~~~~~~~~------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~ 110 (439)
++..+..+.. ....+++.+++| .|..+.+++.+++.++..++.+++|+++||+ |||+++..+.++.+++.++
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3333333333 334455677889 9999999999999999999999999999999 9999999999999999999
Q ss_pred Hhhcc-hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655 111 SAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI---FQTFWTVGTILEAGIAWLVMPRLGWRWLL 185 (439)
Q Consensus 111 ~~~~~-~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~---~~~~~~~g~~i~~~l~~~l~~~~g~~~~~ 185 (439)
.++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+.+.++|..++|.+++++.+..||+..|
T Consensus 102 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 102 LAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99998 9999999999999999988 7788999999999999876666 89999999999999999999989999999
Q ss_pred HHhHHHHHHHHHHHhc
Q 013655 186 GLSAFPSSLLLLLYSV 201 (439)
Q Consensus 186 ~~~~~~~~~~~~~~~~ 201 (439)
++.+++.++..+..++
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 182 GIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888877766555444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.58 E-value=6.2e-14 Score=135.79 Aligned_cols=170 Identities=16% Similarity=0.112 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--chhHHHHHHHHHHH-HHH
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGFLITAIVTS-AAG 108 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~~~~~~-~~~ 108 (439)
...+..+...........+.|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 33344444445555556666766655 899999999999999999999999999999999 99999888777766 666
Q ss_pred HHHhhc--chHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHH
Q 013655 109 LLSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLGWRWL 184 (439)
Q Consensus 109 ~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g~~~~ 184 (439)
++..+. .+.+.+.+..++.|++.+.. +....++.|..|+++||+++|+.+....+ |..++|.+.+++.+..||+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 666665 36777888888899988777 66678899999999999999999999999 999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhcc
Q 013655 185 LGLSAFPSSLLLLLYSVT 202 (439)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ 202 (439)
|++.+++.++..++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888887776665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=5.3e-13 Score=128.71 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=123.9
Q ss_pred HHHHHHHHHH-h-hhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 013655 46 MLLSFVGPAV-Q-SLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFF 123 (439)
Q Consensus 46 ~~~~~~~~~~-~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (439)
.....+.|.+ . +.+|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 353 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA- 353 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-
Confidence 3344444544 4 556999999999999999999999999999999999999999999999999888888887765544
Q ss_pred HHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHhc
Q 013655 124 RCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLG-WRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 124 ~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 201 (439)
.++.|++.+.. +...++..|.+|++ ++.+.++.. ...+|..++|.+.+++.+..| ++..|++.+++.++..+..+.
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 47888888877 77778888998866 888888877 567999999999999999988 999888776655554444333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.51 E-value=2.1e-13 Score=130.94 Aligned_cols=144 Identities=10% Similarity=0.024 Sum_probs=120.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc-hhhHHHH
Q 013655 63 PNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWF 141 (439)
Q Consensus 63 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~ 141 (439)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888888899999999999999999999999888888888878788888888877777778776655 5566889
Q ss_pred hhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hcccCCc
Q 013655 142 LEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPESP 206 (439)
Q Consensus 142 ~~~~~~~~rg~~~~~-~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 206 (439)
.|.+|++.||++.++ ++....+|..++|.+++++.+..|++..|.+.+++.++..++. +..||++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999999 5888899999999999999998899999988888877776554 4445543
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.41 E-value=4.1e-12 Score=124.49 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhh
Q 013655 34 AGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAF 113 (439)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 113 (439)
.....+...........+.+.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 33344444455556667778888888988888888888889999999999999999999999999888887777665543
Q ss_pred c-----chHHH-HHHHHHHHhhccCcchhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc------ccch
Q 013655 114 A-----PNYYL-LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------RLGW 181 (439)
Q Consensus 114 ~-----~~~~~-~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~------~~g~ 181 (439)
. ++... ..+..+..+++.+..++.+.+.+|.+|++.|++++|+......+|..+++.+.+.+.+ ..++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~ 441 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN 441 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2 12222 2222233344455446777899999999999999999999999999998887766543 2345
Q ss_pred hHHHHHhHHHHHHHHH-HHhcccCCc
Q 013655 182 RWLLGLSAFPSSLLLL-LYSVTPESP 206 (439)
Q Consensus 182 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 206 (439)
...|++.++++++..+ .++++||+.
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hHHHHHHHHHHHHHHHHHHheecCCC
Confidence 5677777777766654 467889983
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.25 E-value=2.5e-11 Score=118.92 Aligned_cols=152 Identities=16% Similarity=0.001 Sum_probs=118.3
Q ss_pred HHHHHHH-hhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH-----HHHHHHHHHHHHHhhcc-------
Q 013655 49 SFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFL-----ITAIVTSAAGLLSAFAP------- 115 (439)
Q Consensus 49 ~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~~~------- 115 (439)
....+.+ .+.++.+....+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344444 4456777778888889999999999999999999999986544 67777777666555532
Q ss_pred --hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHH
Q 013655 116 --NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPS 192 (439)
Q Consensus 116 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~ 192 (439)
+.+.+.+..++.|++.+.. +....++.|..|+++||++.|+.+....+|..+++.+.+++.+ .++...|.+.+++.
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence 6677778888999998887 7778899999999999999999999999999999999888765 46777787777777
Q ss_pred HHHHHHHhc
Q 013655 193 SLLLLLYSV 201 (439)
Q Consensus 193 ~~~~~~~~~ 201 (439)
++..+..++
T Consensus 462 ~~~~~~~~~ 470 (491)
T 4aps_A 462 VVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.06 E-value=2.1e-11 Score=115.00 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH-HHHHHH-
Q 013655 33 YAGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV-TSAAGL- 109 (439)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~- 109 (439)
...+..+...........+.|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33334444444455555556655544 8999999999999999999999999999999998832 222222 222222
Q ss_pred -HHhh--cchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 013655 110 -LSAF--APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLL 185 (439)
Q Consensus 110 -~~~~--~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~~~~ 185 (439)
.... .++.+.+.+..++.|++.+.. +....++.|..| ++||++.|+.+....+|..++|.+.+.+.+..+|+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 2222 236677778888889988887 777788899998 89999999999999999999999999998877788777
Q ss_pred HHhHH
Q 013655 186 GLSAF 190 (439)
Q Consensus 186 ~~~~~ 190 (439)
++.++
T Consensus 360 ~~~~~ 364 (375)
T 2gfp_A 360 LMTLM 364 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.69 E-value=1.1e-08 Score=100.90 Aligned_cols=137 Identities=10% Similarity=0.019 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh----hhcch----hHHHHHHHHHHHHHHHHHhhc---------chHHHHHHHHHHH
Q 013655 65 QESLITSVVFAGMLVGAYSWGIVS----DNFGR----RKGFLITAIVTSAAGLLSAFA---------PNYYLLLFFRCLV 127 (439)
Q Consensus 65 ~~g~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 127 (439)
..+++.....++..++.++.+++. ||.|+ ++.+..+.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666666667777666654 55443 356677777788877776663 3667777888899
Q ss_pred hhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc--ch---------hHHHHHhHHHHHHH
Q 013655 128 GLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRL--GW---------RWLLGLSAFPSSLL 195 (439)
Q Consensus 128 G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~--g~---------~~~~~~~~~~~~~~ 195 (439)
|++.+.. +....++.|..|+++||+++|+.+....+|..++|.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9998888 777789999999999999999999999999999999999987742 23 33366666666655
Q ss_pred HHHHhc
Q 013655 196 LLLYSV 201 (439)
Q Consensus 196 ~~~~~~ 201 (439)
.++.++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 554433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.10 E-value=9 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhHHH
Q 013655 373 LAAAMVDRLGRKLS 386 (439)
Q Consensus 373 ~~g~l~dr~grr~~ 386 (439)
+.|.++.++||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=23.46 E-value=1.6e+02 Score=23.95 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchh
Q 013655 70 TSVVFAGMLVGAYSWGIVSDNFGRR 94 (439)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~dr~G~r 94 (439)
+.-|.++..+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567788888999999999997543
Done!