Query 013655
Match_columns 439
No_of_seqs 391 out of 1518
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 14:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013655.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013655hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 1.1E-30 7.9E-35 251.3 19.1 345 23-439 19-375 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 1.2E-23 9E-28 198.5 17.0 327 31-439 9-344 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.6 3.9E-15 2.8E-19 139.3 15.5 150 55-204 250-402 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 1.8E-12 1.3E-16 122.7 18.4 152 50-201 271-429 (447)
5 d2yvxa3 f.57.1.1 (A:276-448) M 7.3 2.3E+02 0.017 20.5 4.3 25 74-98 123-147 (173)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 5.0 2E+02 0.015 13.3 3.2 7 200-206 21-27 (30)
7 d1oedb_ f.36.1.1 (B:) Acetylch 4.9 6E+02 0.044 18.7 6.0 9 92-100 30-38 (250)
8 d3proc1 d.52.1.1 (C:6-85) Alph 4.3 4.3E+02 0.031 16.2 5.6 41 52-92 4-44 (80)
9 d2b0la1 a.4.5.66 (A:167-257) G 2.9 1.4E+02 0.01 18.5 0.1 19 81-99 34-52 (91)
10 d1u7ga_ f.44.1.1 (A:) Ammonium 2.8 1.2E+03 0.087 18.7 12.9 162 31-199 196-375 (383)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=1.1e-30 Score=251.30 Aligned_cols=345 Identities=16% Similarity=0.152 Sum_probs=240.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Q 013655 23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 102 (439)
.++++|.++..+.++++..++....++...|.+. ++|+|.++.|++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3467788888888888888888777888888776 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc----hHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013655 103 VTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP 177 (439)
Q Consensus 103 ~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~ 177 (439)
+.+++.+++++++ +++.+++.|++.|++.+.. +....++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999988887764 6788999999999999888 7788999999999999999999999999999999999888766
Q ss_pred c-cchhHHHHHhHHHHHHHHHH-HhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCC
Q 013655 178 R-LGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS 255 (439)
Q Consensus 178 ~-~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (439)
. .+||..+++.+++.++..++ +++.++.|+........+.. .+.
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~------- 223 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------------------------NDY------- 223 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------------------------CC--------
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh---------------------------hhc-------
Confidence 4 47999998888777766554 44455544221100000000 000
Q ss_pred CCCCCCchhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 013655 256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL 335 (439)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (439)
+++.+++.+ ++...+....+..++++.. +......++.....+....+.+.+
T Consensus 224 --------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 275 (447)
T d1pw4a_ 224 --------------PDDYNEKAE-----------QELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTY 275 (447)
T ss_dssp -------------------------------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------ccchhhccc-----------cccchhhHHHHHHHcCchH---HHHHHHhhhhhhhhhcchhhhhhh
Confidence 000000000 0000011134445544433 333333344445555666677776
Q ss_pred hcCCCcccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHhh--ccccchh
Q 013655 336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC---CIFLVPLLF--QQPKGLT 410 (439)
Q Consensus 336 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~---~~~~~~~~~--~~~~~~~ 410 (439)
..+. .+.+....+.......+..+++.++.|++.||++|+.......... .++.+.+.. ..+.+..
T Consensus 276 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
T d1pw4a_ 276 LKEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 346 (447)
T ss_dssp BTTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred cccc---------cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence 6442 3456666688888889999999999999999998765433322222 222222222 2234455
Q ss_pred hhHHHHHHhhhhheeeeeeeeccccccCC
Q 013655 411 TGLLFGARICITVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 411 ~~~~~~~g~~~~~~~~~~~~~~~e~~p~~ 439 (439)
.+..++.|++.++..+....+..|.+|++
T Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 347 MICMIVIGFLIYGPVMLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 56667777777787888888999999875
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=1.2e-23 Score=198.45 Aligned_cols=327 Identities=14% Similarity=0.012 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPA-VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGL 109 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 109 (439)
++.+.+.++...+......+++|. +.+++|+|+.++|++.+++.++..++++++|+++||+|||++++.+..+.+++..
T Consensus 9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~ 88 (417)
T d1pv7a_ 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 334444455555666666666665 5677999999999999999999999999999999999999999999988888888
Q ss_pred HHhhcchHHHH----HHHHHHHhhccCcc-hhhHHHHhhhcC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 013655 110 LSAFAPNYYLL----LFFRCLVGLGLGGG-PVLASWFLEFIP--APNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWR 182 (439)
Q Consensus 110 ~~~~~~~~~~~----~~~~~l~G~~~g~~-~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~i~~~l~~~l~~~~g~~ 182 (439)
+..+..+.... ++.+.+.+.+.+.. ........+..+ .+++....+........+..+++.+++.+.+..+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (417)
T d1pv7a_ 89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF 168 (417)
T ss_dssp HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccc
Confidence 87776655443 34444444444443 222222222222 234556677788888889999999999887754444
Q ss_pred HHHHHhHHHHHHHHHHHhcccCCchhhhhccchHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhhccccCCCCCCCCCc
Q 013655 183 WLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTT 262 (439)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (439)
..+.......+...+..+..++.+.....+++. . ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~------------------------------- 204 (417)
T d1pv7a_ 169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAV---G----------AN------------------------------- 204 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH---H----------SC-------------------------------
T ss_pred cccchhhHHHHHHHHHHHHhcccccchhhhhhh---h----------hh-------------------------------
Confidence 444444455555555566666554211100000 0 00
Q ss_pred hhhhcccCCchhHhhhccccccchhhccccchhHHHHHHhhChHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhcCCCc
Q 013655 263 PKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLL-LWLVFFGNAFSYYGLVLLTTELNNGQNK 341 (439)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
.+ +.........++.+..+.... .................+......
T Consensus 205 ----------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 252 (417)
T d1pv7a_ 205 ----------------HS------------AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA---- 252 (417)
T ss_dssp ----------------CC------------CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS----
T ss_pred ----------------cc------------cccccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc----
Confidence 00 000001122222222222222 222222222222112111111110
Q ss_pred ccccccccCCCCCCchhhHHHHhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHhhh
Q 013655 342 CVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICI 421 (439)
Q Consensus 342 ~~~~~~~~g~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 421 (439)
+.+.+............++..++..+.+++.||.|+|+.+..+..+.+++.+.+.+.++.+...+..++.+++.
T Consensus 253 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 326 (417)
T d1pv7a_ 253 ------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV 326 (417)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred ------ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence 01122223356667777888899999999999999999999999999999988888888888888888899999
Q ss_pred hheeeeeeeeccccccCC
Q 013655 422 TVTFTVVYVYAPEVSHRS 439 (439)
Q Consensus 422 ~~~~~~~~~~~~e~~p~~ 439 (439)
+...+...+++.|.+|++
T Consensus 327 ~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 327 PFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHCCHh
Confidence 999999999999999864
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.61 E-value=3.9e-15 Score=139.30 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=130.5
Q ss_pred HhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccCcc
Q 013655 55 VQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG 134 (439)
Q Consensus 55 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 134 (439)
..++.+.+....+.......++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence 33444556677788888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred -hhhHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH-hcccC
Q 013655 135 -PVLASWFLEFIPAPNRGFWMVIF-QTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLY-SVTPE 204 (439)
Q Consensus 135 -~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (439)
+...+++.|.+|++.|+++.|+. +....+|..++|.+.+++.+.+||+..|++.+++.++..++. +.+++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77789999999999999999985 567789999999999999999999999998888877765554 44443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.44 E-value=1.8e-12 Score=122.72 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=116.7
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH---HHHHHHHHHhh--cchHHHHHHHH
Q 013655 50 FVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI---VTSAAGLLSAF--APNYYLLLFFR 124 (439)
Q Consensus 50 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~ 124 (439)
....++.+.++.+..+.++..+...++..++.++.|++.||++||+....... +..++..+... ..+.+...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T d1pw4a_ 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 350 (447)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33445567789999999999999999999999999999999997654333222 22222222222 34677778888
Q ss_pred HHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHhc
Q 013655 125 CLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSV 201 (439)
Q Consensus 125 ~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~i~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (439)
++.|++.+.. +....+..|.+|++.||++.|+.+....+ |.+++|.+.+++.+.+||+..+++.+++.++..++...
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 8889888776 66778889999999999999998887776 56678999999999999999998877777666554433
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.28 E-value=2.3e+02 Score=20.48 Aligned_cols=25 Identities=4% Similarity=-0.095 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHH
Q 013655 74 FAGMLVGAYSWGIVSDNFGRRKGFL 98 (439)
Q Consensus 74 ~~~~~~~~~~~g~l~dr~G~r~~~~ 98 (439)
.+...+.+.....+.+|+|.-+...
T Consensus 123 ~~ia~~~G~~lPlll~klg~DPA~a 147 (173)
T d2yvxa3 123 VFFANLVGAMLPFLLRRLGVDPALV 147 (173)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhh
Confidence 3333444455567888988766543
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.01 E-value=2e+02 Score=13.32 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.4
Q ss_pred hcccCCc
Q 013655 200 SVTPESP 206 (439)
Q Consensus 200 ~~~~~~~ 206 (439)
.+.+|+|
T Consensus 21 iffrepp 27 (30)
T d2axtt1 21 IFFREPP 27 (30)
T ss_dssp HHTSCCC
T ss_pred HHhcCCC
Confidence 3445554
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.90 E-value=6e+02 Score=18.75 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.7
Q ss_pred chhHHHHHH
Q 013655 92 GRRKGFLIT 100 (439)
Q Consensus 92 G~r~~~~~~ 100 (439)
|.|-.+-++
T Consensus 30 ~er~~l~it 38 (250)
T d1oedb_ 30 GEKMSLSIS 38 (250)
T ss_dssp GGGHHHHHH
T ss_pred CCcEEeeHH
Confidence 444443333
No 8
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=4.33 E-value=4.3e+02 Score=16.19 Aligned_cols=41 Identities=15% Similarity=-0.083 Sum_probs=27.0
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013655 52 GPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFG 92 (439)
Q Consensus 52 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G 92 (439)
+..+.+++|+++.+..--...-.-..-+-.-+-.-+.|+||
T Consensus 4 ~~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 4 KFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45678899999998876655555555555555555555554
No 9
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.92 E-value=1.4e+02 Score=18.47 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=13.4
Q ss_pred HHHHHHhhhhcchhHHHHH
Q 013655 81 AYSWGIVSDNFGRRKGFLI 99 (439)
Q Consensus 81 ~~~~g~l~dr~G~r~~~~~ 99 (439)
-+++..++||.|-.|..+.
T Consensus 34 llvASkiADrvgiTRSVIV 52 (91)
T d2b0la1 34 LLVASKIADRVGITRSVIV 52 (91)
T ss_dssp EECHHHHHHHHTCCHHHHH
T ss_pred eEeehhhhhhhCchHHHHH
Confidence 3567889999996655443
No 10
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.78 E-value=1.2e+03 Score=18.74 Aligned_cols=162 Identities=14% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013655 31 LAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLL 110 (439)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 110 (439)
.....++.++..+.+...+.-. ....................+..+...+.+++-+||.-.....--+++.+.
T Consensus 196 ~~~~~lG~~iLw~gW~gFN~gs-------~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLV 268 (383)
T d1u7ga_ 196 LPMVFTGTAILYIGWFGFNAGS-------AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLV 268 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG-------GSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcccc-------ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhh
Q ss_pred HhhcchHHHHHHHHHHHhhccCcc-hhhHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH----------------
Q 013655 111 SAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW---------------- 173 (439)
Q Consensus 111 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~i~~~l~~---------------- 173 (439)
..-+..-..--..-++.|+..+.. .....++.+...-+.---+.++...+.-.|.+..+..+.
T Consensus 269 aita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~~~~~~~~ 348 (383)
T d1u7ga_ 269 GVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGH 348 (383)
T ss_dssp HHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHH
T ss_pred hcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCccccccccccccchHH
Q ss_pred -HhhcccchhHHHHHhHHHHHHHHHHH
Q 013655 174 -LVMPRLGWRWLLGLSAFPSSLLLLLY 199 (439)
Q Consensus 174 -~l~~~~g~~~~~~~~~~~~~~~~~~~ 199 (439)
...|..+.-.......+...+...+.
T Consensus 349 ql~~Ql~g~~v~~~~~~~~~~ii~~il 375 (383)
T d1u7ga_ 349 QLLVQLESIAITIVWSGVVAFIGYKLA 375 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!