Query 013656
Match_columns 438
No_of_seqs 153 out of 1231
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03074 auxin influx permease 100.0 1.3E-62 2.8E-67 497.6 32.7 414 1-418 1-414 (473)
2 KOG1303 Amino acid transporter 100.0 2.5E-54 5.5E-59 427.7 29.0 370 42-423 30-414 (437)
3 KOG1304 Amino acid transporter 100.0 8.5E-54 1.8E-58 416.7 30.9 376 47-432 44-439 (449)
4 PTZ00206 amino acid transporte 100.0 6E-52 1.3E-56 421.7 28.5 370 44-428 54-450 (467)
5 PF01490 Aa_trans: Transmembra 100.0 3.8E-50 8.2E-55 405.1 0.8 354 48-412 1-379 (409)
6 KOG4303 Vesicular inhibitory a 100.0 3.7E-42 8E-47 316.3 9.9 364 46-422 113-494 (524)
7 KOG1305 Amino acid transporter 100.0 8.8E-39 1.9E-43 315.4 24.0 344 48-407 4-375 (411)
8 COG0814 SdaC Amino acid permea 100.0 2.1E-30 4.5E-35 259.2 27.8 372 47-435 6-408 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.8E-24 8.2E-29 212.7 30.4 347 49-411 2-369 (394)
10 PRK10483 tryptophan permease; 99.9 9.4E-24 2E-28 208.2 28.5 345 47-407 8-373 (414)
11 PRK09664 tryptophan permease T 99.9 2.7E-23 5.8E-28 204.7 28.3 341 51-407 10-374 (415)
12 PRK15132 tyrosine transporter 99.9 1.6E-22 3.5E-27 200.3 28.1 342 50-408 3-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 7.9E-22 1.7E-26 197.0 25.5 336 56-407 3-359 (381)
14 PRK13629 threonine/serine tran 99.8 8.7E-18 1.9E-22 165.9 28.6 357 57-429 26-433 (443)
15 TIGR00814 stp serine transport 99.8 1.3E-16 2.8E-21 158.6 26.1 345 56-411 9-383 (397)
16 TIGR00912 2A0309 spore germina 99.5 2.8E-11 6E-16 120.0 24.7 338 49-408 2-355 (359)
17 TIGR01773 GABAperm gamma-amino 99.4 1.4E-09 3E-14 111.3 34.2 230 48-291 12-256 (452)
18 TIGR00909 2A0306 amino acid tr 99.4 4.9E-10 1.1E-14 113.9 29.3 343 48-408 3-377 (429)
19 PRK10655 potE putrescine trans 99.4 1E-09 2.2E-14 111.8 31.5 232 48-292 6-245 (438)
20 PRK10249 phenylalanine transpo 99.4 1.8E-09 3.9E-14 110.5 32.6 231 48-292 21-265 (458)
21 PRK10644 arginine:agmatin anti 99.4 2.1E-09 4.5E-14 109.8 32.7 236 48-296 8-251 (445)
22 PRK15049 L-asparagine permease 99.4 3.8E-09 8.2E-14 109.2 33.9 344 47-407 27-406 (499)
23 PRK10746 putative transport pr 99.3 7.2E-09 1.6E-13 106.1 34.5 348 48-409 10-390 (461)
24 PRK11049 D-alanine/D-serine/gl 99.3 5.6E-09 1.2E-13 107.3 33.3 350 46-409 18-401 (469)
25 PRK10435 cadB lysine/cadaverin 99.3 1.9E-09 4.1E-14 109.7 27.4 235 48-296 5-247 (435)
26 TIGR00905 2A0302 transporter, 99.3 1.6E-08 3.4E-13 104.1 32.8 234 48-293 7-255 (473)
27 PRK10238 aromatic amino acid t 99.3 2.3E-08 4.9E-13 102.4 33.7 227 48-287 12-251 (456)
28 PRK11387 S-methylmethionine tr 99.3 2E-08 4.4E-13 103.2 33.0 236 48-296 14-266 (471)
29 PRK11021 putative transporter; 99.3 1.8E-08 3.9E-13 101.8 31.7 225 51-290 2-231 (410)
30 PRK10580 proY putative proline 99.3 5.1E-08 1.1E-12 99.9 35.3 229 48-290 9-253 (457)
31 TIGR00906 2A0303 cationic amin 99.2 9.5E-09 2.1E-13 107.4 29.2 344 47-408 27-412 (557)
32 TIGR03810 arg_ornith_anti argi 99.2 2.1E-08 4.5E-13 103.1 31.3 347 48-408 1-381 (468)
33 PRK10197 gamma-aminobutyrate t 99.2 6.4E-08 1.4E-12 98.8 32.6 333 59-407 3-368 (446)
34 PRK10836 lysine transporter; P 99.2 9.3E-08 2E-12 98.8 34.2 235 48-295 15-264 (489)
35 PF13520 AA_permease_2: Amino 99.2 3E-08 6.5E-13 100.6 29.7 343 51-411 2-379 (426)
36 TIGR00913 2A0310 amino acid pe 99.2 1.2E-07 2.7E-12 97.7 34.3 231 48-290 2-251 (478)
37 TIGR00908 2A0305 ethanolamine 99.2 1.5E-07 3.3E-12 96.0 32.7 226 48-289 7-244 (442)
38 PF03845 Spore_permease: Spore 99.1 2.3E-08 4.9E-13 97.6 24.1 281 50-349 2-296 (320)
39 TIGR00911 2A0308 L-type amino 99.1 1.6E-07 3.4E-12 97.4 30.3 238 46-296 40-295 (501)
40 KOG1287 Amino acid transporter 99.1 2E-08 4.4E-13 100.0 21.2 349 48-412 12-391 (479)
41 KOG3832 Predicted amino acid t 99.1 2.3E-09 5E-14 93.3 12.2 212 55-268 17-304 (319)
42 TIGR00930 2a30 K-Cl cotranspor 99.0 1.2E-07 2.5E-12 104.3 27.6 226 49-290 77-334 (953)
43 PRK11357 frlA putative fructos 99.0 1.2E-06 2.7E-11 89.4 30.5 231 48-291 8-250 (445)
44 COG0833 LysP Amino acid transp 98.9 1.2E-06 2.6E-11 88.1 25.1 345 48-408 44-429 (541)
45 COG1113 AnsP Gamma-aminobutyra 98.9 1.1E-06 2.4E-11 86.6 24.2 337 50-406 15-388 (462)
46 COG0531 PotE Amino acid transp 98.9 7.7E-06 1.7E-10 83.9 31.6 236 49-297 13-262 (466)
47 TIGR03428 ureacarb_perm permea 98.8 6.3E-05 1.4E-09 77.5 36.2 59 238-296 214-273 (475)
48 TIGR03813 put_Glu_GABA_T putat 98.7 3.4E-05 7.4E-10 79.5 31.9 165 245-409 202-387 (474)
49 PRK15238 inner membrane transp 98.7 7.7E-05 1.7E-09 77.3 32.6 54 238-291 212-266 (496)
50 TIGR00910 2A0307_GadC glutamat 98.7 3.6E-05 7.8E-10 79.9 30.1 49 241-289 198-247 (507)
51 PF00324 AA_permease: Amino ac 98.5 2.4E-06 5.2E-11 88.1 14.1 226 60-299 7-263 (478)
52 COG1457 CodB Purine-cytosine p 98.4 0.00025 5.4E-09 70.9 26.7 256 129-394 86-349 (442)
53 TIGR00907 2A0304 amino acid pe 98.4 0.00087 1.9E-08 69.3 32.2 49 239-287 219-268 (482)
54 KOG1286 Amino acid transporter 98.4 1E-05 2.2E-10 83.8 17.5 337 56-408 38-424 (554)
55 KOG1289 Amino acid transporter 98.4 0.001 2.3E-08 67.3 29.4 60 238-297 253-313 (550)
56 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.00039 8.4E-09 71.0 26.5 175 125-299 77-274 (442)
57 PRK11375 allantoin permease; P 98.2 0.00098 2.1E-08 68.7 25.8 265 125-395 90-391 (484)
58 COG3949 Uncharacterized membra 97.9 0.0062 1.3E-07 58.0 22.8 127 57-200 10-141 (349)
59 TIGR02358 thia_cytX probable h 97.9 0.017 3.6E-07 57.9 27.2 171 125-298 59-234 (386)
60 COG0591 PutP Na+/proline sympo 97.7 0.1 2.2E-06 54.1 34.3 143 54-207 44-188 (493)
61 PF00474 SSF: Sodium:solute sy 97.5 0.037 8.1E-07 55.8 23.0 144 50-208 8-154 (406)
62 TIGR00796 livcs branched-chain 97.4 0.15 3.3E-06 50.7 27.0 308 58-405 3-348 (378)
63 PRK12488 acetate permease; Pro 97.4 0.24 5.3E-06 52.0 33.0 145 49-209 68-215 (549)
64 PRK11017 codB cytosine permeas 97.4 0.071 1.5E-06 53.7 23.1 170 125-297 72-244 (404)
65 TIGR00813 sss transporter, SSS 97.2 0.3 6.5E-06 49.2 29.8 84 124-208 66-150 (407)
66 PRK09442 panF sodium/panthothe 97.2 0.39 8.5E-06 49.6 35.5 146 51-208 44-192 (483)
67 TIGR02119 panF sodium/pantothe 97.0 0.55 1.2E-05 48.4 33.6 150 49-209 41-192 (471)
68 TIGR02121 Na_Pro_sym sodium/pr 96.9 0.67 1.5E-05 48.0 33.4 147 51-207 39-189 (487)
69 TIGR00835 agcS amino acid carr 96.7 0.78 1.7E-05 46.2 28.2 83 49-141 46-134 (425)
70 TIGR02711 symport_actP cation/ 96.3 1.8 3.9E-05 45.5 31.5 140 52-207 71-213 (549)
71 PF02133 Transp_cyt_pur: Perme 96.0 0.3 6.6E-06 49.7 16.5 169 125-294 72-259 (440)
72 COG1953 FUI1 Cytosine/uracil/t 95.8 2.5 5.4E-05 43.1 23.7 217 187-409 183-417 (497)
73 PRK15419 proline:sodium sympor 95.6 3.3 7.2E-05 43.0 33.5 83 125-208 109-194 (502)
74 PF02554 CstA: Carbon starvati 95.6 0.26 5.5E-06 48.2 13.0 148 48-208 50-197 (376)
75 PF01235 Na_Ala_symp: Sodium:a 95.5 3.2 6.9E-05 41.8 21.3 52 48-100 17-69 (416)
76 TIGR03648 Na_symport_lg probab 95.2 4.9 0.00011 42.3 32.6 143 49-206 33-177 (552)
77 COG1914 MntH Mn2+ and Fe2+ tra 95.0 4.5 9.8E-05 40.7 30.6 93 335-428 307-401 (416)
78 PRK09395 actP acetate permease 94.9 6.1 0.00013 41.6 33.8 82 125-207 133-215 (551)
79 PF01566 Nramp: Natural resist 94.2 6.3 0.00014 39.0 25.4 76 125-201 43-120 (358)
80 KOG1288 Amino acid transporter 94.0 4.8 0.0001 42.5 17.7 36 258-293 315-351 (945)
81 PRK15015 carbon starvation pro 92.4 1.3 2.8E-05 46.5 10.9 92 53-156 86-177 (701)
82 TIGR00796 livcs branched-chain 91.4 2.8 6.2E-05 41.7 11.9 66 126-191 257-322 (378)
83 COG1966 CstA Carbon starvation 90.2 5 0.00011 41.3 12.4 95 49-155 51-145 (575)
84 COG0733 Na+-dependent transpor 89.4 26 0.00056 35.4 24.7 37 237-273 214-251 (439)
85 PRK10484 putative transporter; 89.1 32 0.00068 36.0 31.2 36 262-297 269-307 (523)
86 PF00209 SNF: Sodium:neurotran 85.2 38 0.00083 35.4 16.1 87 186-274 191-287 (523)
87 KOG2083 Na+/K+ symporter [Inor 85.0 5.4 0.00012 41.4 9.1 50 238-287 224-274 (643)
88 PF05525 Branch_AA_trans: Bran 82.8 8.8 0.00019 38.8 9.6 121 60-192 206-329 (427)
89 PF05525 Branch_AA_trans: Bran 82.2 61 0.0013 32.9 25.3 310 54-404 7-353 (427)
90 PRK00701 manganese transport p 81.3 67 0.0015 32.8 29.3 35 125-159 95-129 (439)
91 COG4147 DhlC Predicted symport 76.4 96 0.0021 31.8 26.0 284 125-414 105-448 (529)
92 COG1114 BrnQ Branched-chain am 72.9 49 0.0011 33.2 11.1 108 73-192 224-331 (431)
93 PRK15433 branched-chain amino 61.3 63 0.0014 32.9 9.6 107 73-192 226-332 (439)
94 KOG1277 Endosomal membrane pro 58.1 1.9E+02 0.004 29.5 11.8 45 58-109 293-337 (593)
95 PRK09928 choline transport pro 52.4 3.4E+02 0.0073 29.4 17.9 47 56-102 99-159 (679)
96 KOG2082 K+/Cl- cotransporter K 50.1 3.1E+02 0.0067 30.0 12.5 49 50-98 115-164 (1075)
97 PF02028 BCCT: BCCT family tra 49.6 3.2E+02 0.0069 28.3 24.2 41 254-294 317-358 (485)
98 PHA02680 ORF090 IMV phosphoryl 39.5 70 0.0015 24.4 4.4 56 243-298 17-72 (91)
99 PRK15433 branched-chain amino 36.4 4.8E+02 0.01 26.6 25.9 41 53-93 11-54 (439)
100 TIGR01197 nramp NRAMP (natural 32.1 5.3E+02 0.012 25.8 31.4 61 336-401 316-378 (390)
101 PRK00665 petG cytochrome b6-f 30.2 99 0.0021 19.3 3.3 25 78-110 7-31 (37)
102 PF03977 OAD_beta: Na+-transpo 29.6 1.2E+02 0.0027 29.5 5.5 88 237-325 145-253 (360)
103 KOG1289 Amino acid transporter 29.1 7E+02 0.015 26.2 12.8 40 126-165 327-366 (550)
104 CHL00008 petG cytochrome b6/f 27.8 1.2E+02 0.0026 18.9 3.3 25 78-110 7-31 (37)
105 PF10716 NdhL: NADH dehydrogen 27.0 2.2E+02 0.0047 21.4 5.3 49 377-427 14-62 (81)
106 COG0534 NorM Na+-driven multid 26.4 7E+02 0.015 25.4 11.0 30 263-292 310-339 (455)
107 PHA03048 IMV membrane protein; 25.2 1.9E+02 0.004 22.2 4.7 55 243-299 17-71 (93)
108 KOG1725 Protein involved in me 23.8 5E+02 0.011 23.0 7.9 43 379-422 52-94 (186)
109 PF02109 DAD: DAD family; Int 23.6 4E+02 0.0086 21.5 8.4 59 376-435 48-108 (112)
110 PF01988 VIT1: VIT family; In 23.3 2E+02 0.0044 26.0 5.7 28 50-77 130-157 (213)
111 COG3476 Tryptophan-rich sensor 23.1 1.9E+02 0.0042 25.0 5.1 49 250-299 24-72 (161)
112 PF08006 DUF1700: Protein of u 23.0 2.8E+02 0.0061 24.2 6.5 15 60-74 82-96 (181)
113 PRK09950 putative transporter; 22.6 8.9E+02 0.019 25.3 20.6 15 56-70 90-104 (506)
114 TIGR01109 Na_pump_decarbB sodi 21.7 1.1E+02 0.0024 29.6 3.7 87 237-324 145-252 (354)
115 PRK15475 oxaloacetate decarbox 21.3 1.1E+02 0.0024 30.2 3.6 87 237-324 216-323 (433)
116 PRK15476 oxaloacetate decarbox 20.9 1.1E+02 0.0024 30.1 3.6 87 237-324 216-323 (433)
117 PRK15477 oxaloacetate decarbox 20.8 1.1E+02 0.0025 30.1 3.6 87 237-324 216-323 (433)
118 PF02468 PsbN: Photosystem II 20.8 92 0.002 20.4 2.1 26 274-299 6-31 (43)
119 PRK13183 psbN photosystem II r 20.2 93 0.002 20.7 2.0 28 272-299 7-34 (46)
No 1
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.3e-62 Score=497.64 Aligned_cols=414 Identities=85% Similarity=1.408 Sum_probs=365.7
Q ss_pred CCchhhHHHHHHhhccccccCCCCCCCCCchhHhhhhhhcccccccccCccHHHHHHHHHhhhhhhhhchhhHHHHhhch
Q 013656 1 MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGM 80 (438)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~ 80 (438)
|..++.+++..+++.+|.|++.+++.++ .+.++...++++..|+++|.++|++|+++.++|+|+|+||+||+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~ 76 (473)
T PLN03074 1 MMAGKQAETAIVGNYVEMEVEGGGEKEE----GGGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGM 76 (473)
T ss_pred CCCccccchhHhhccchhcccccccccc----CCCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccH
Confidence 4556666777777666665442222221 123466778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHH
Q 013656 81 LSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIA 160 (438)
Q Consensus 81 ~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~ 160 (438)
++|++.++++++++.||.+++.+++.++++|++.++.++++++.+|.|+++..+||+|+.+..+++++++++.++.|++.
T Consensus 77 v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~ 156 (473)
T PLN03074 77 LSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIA 156 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999988999887777778888877999999999999999999999999999999999999
Q ss_pred hhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccHHHHH
Q 013656 161 CASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (438)
++++++.+++..+.+.|++++++++.|++++|++++++++|.+|+.+++++++++++.++.+++.|+.++..+.++..++
T Consensus 157 ~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f 236 (473)
T PLN03074 157 CASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYF 236 (473)
T ss_pred HhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHH
Confidence 89888888888999999999999999999999999999999999998888777777787777777777666566777888
Q ss_pred HHHHhHHhhcccccchhhhhhcccCcccchhHHHHHHHHHHHHHHhhHhHHHHhhCccccccccccccCCCchHHHHHHH
Q 013656 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVI 320 (438)
Q Consensus 241 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~~~~~~~~ 320 (438)
.++++++|||++|.++|+++++||+|++|+++...+..+++++|+.+|+.||++|||++.+++++++++|++.+.+++++
T Consensus 237 ~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~ 316 (473)
T PLN03074 237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVI 316 (473)
T ss_pred HHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999987645688988998778899999
Q ss_pred HHHHHHHHhHhhhhccHHHHHHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHH
Q 013656 321 LMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 400 (438)
Q Consensus 321 ~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~ 400 (438)
+++++++.+||+++.|+.+.+|+..+.|+++....|+.+|+.+++.++++|..+|+|+++++++||++++.+++++|+++
T Consensus 317 ~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~ 396 (473)
T PLN03074 317 LMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 396 (473)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987665566788999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccchhhhh
Q 013656 401 HMLTYRKASARQVKNCSY 418 (438)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (438)
|++.++++.+|++..|||
T Consensus 397 ~l~~~~~~~~~~~~~~~~ 414 (473)
T PLN03074 397 HMLTYRSASARQNAAEKP 414 (473)
T ss_pred HHHHhcchhhhhhcccCC
Confidence 999888776666644444
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-54 Score=427.65 Aligned_cols=370 Identities=29% Similarity=0.420 Sum_probs=320.2
Q ss_pred cccccccCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 013656 42 MKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKN 121 (438)
Q Consensus 42 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~ 121 (438)
.....++++|.++|.+|.++.++|+|+|+||||++|+||+.|++++++.+++++||.++|.+++++++.+..+ +.
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~---r~-- 104 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK---RR-- 104 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---cC--
Confidence 3444577799999999999999999999999999999999999999999999999999999988776544322 22
Q ss_pred ccccHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccc------ccc-cccchhhHHHHHHHHhHhhccCCc
Q 013656 122 HVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY------IND-RLDKRTWTYIFGACCATTVFIPSF 194 (438)
Q Consensus 122 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~------~~~-~~~~~~~~~i~~~~~~pl~~~~~l 194 (438)
.+|.|+++++||+++++++...+.+.+++.++.|++..++++.. .++ ..+.+.|+++++++.+|++++||+
T Consensus 105 --~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~ 182 (437)
T KOG1303|consen 105 --YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF 182 (437)
T ss_pred --CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc
Confidence 26999999999999999999999999999999999999988742 233 455789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCcccchh
Q 013656 195 HNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGA---SHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY 271 (438)
Q Consensus 195 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 271 (438)
+.++++|..|.++++..+++.+..++.+|..+.. ++....+....|+++|++.|+|++|+++|||+++||+|.+++|
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~ 262 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK 262 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh
Confidence 9999999999999888888888888887744421 2211111111289999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhCccccccccccccCC-CchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCCCC
Q 013656 272 IYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP-KNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDT 350 (438)
Q Consensus 272 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~-~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~ 350 (438)
++..+..+++++|+..++.||++|||+++ +|++.+++ +.++...+++++.+|++.++..+..|+.+.+|+..+.+++
T Consensus 263 ~~lis~~~~~~~y~~vai~GY~aFG~~~~--~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~ 340 (437)
T KOG1303|consen 263 ALLISYIIVTFLYFPVAIIGYWAFGDSVP--DNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHP 340 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccc--hhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCc
Confidence 99999999999999999999999999994 69999996 5666688999999999999999999999999999986554
Q ss_pred ----ccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhhhhhHHHH
Q 013656 351 ----KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNCSYFDMLM 423 (438)
Q Consensus 351 ----~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~ 423 (438)
+....|.+.|..+++.++++|..+|+|+++++++||+....+++++|+++|+..+|.++..+ ++...|..
T Consensus 341 ~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~---~~~~~~~~ 414 (437)
T KOG1303|consen 341 DFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSP---KWLLNWVI 414 (437)
T ss_pred cccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHh
Confidence 35679999999999999999999999999999999999999999999999999966555443 56666554
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-54 Score=416.67 Aligned_cols=376 Identities=19% Similarity=0.199 Sum_probs=321.0
Q ss_pred ccCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 47 WHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
.++.|..+|+.|+.|.++|+|+|+||+||+++||+.|.+...++++++.|+++++.++..+.++|...+. .+|
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~-------~~y 116 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPS-------LDY 116 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCcc-------ccH
Confidence 4589999999999999999999999999999999999999999999999999988877667666543322 256
Q ss_pred HHHHHh----------hcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccc-----cccccchhhHHHHHHHHhHhhcc
Q 013656 127 FEVLDG----------LLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDRLDKRTWTYIFGACCATTVFI 191 (438)
Q Consensus 127 ~~l~~~----------~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-----~~~~~~~~~~~i~~~~~~pl~~~ 191 (438)
.+.++. .+||++|.++..+.+++++|.|++|++..++++..+ ....+.+.|+.+..+.+++++++
T Consensus 117 ~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 117 AETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred HHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 666554 456667778899999999999999999988887543 34568899999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCcccch-
Q 013656 192 PSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK- 270 (438)
Q Consensus 192 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~- 270 (438)
|+++.|+.+|.++.+.......++.+..+.+. ++-.+.+...++.+++..+|+.+|||+|++++.|++++||+|++|+
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~-~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g 275 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLAIIMYYLVQDL-PPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPG 275 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCC
Confidence 99999999999999987665544444444432 2322333344578888999999999999999999999999999999
Q ss_pred --hHHHHHHHHHHHHHHhhHhHHHHhhCccccccccccccCCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcC-
Q 013656 271 --YIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGM- 347 (438)
Q Consensus 271 --~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~- 347 (438)
+++..+|.++.++|..+|++||++||++++ +.++.|+|++.+.+.+++++++.++++||++++|..+++|+.+..
T Consensus 276 ~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~--~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k 353 (449)
T KOG1304|consen 276 PFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVK--GSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKK 353 (449)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcccccc--ceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHh
Confidence 999999999999999999999999999994 699999999888899999999999999999999999999987642
Q ss_pred -CCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhhhhhHHHHHHh
Q 013656 348 -HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNCSYFDMLMVFW 426 (438)
Q Consensus 348 -~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (438)
++++.++....+|..++++++.+|..+|+++.+++++||++++.+.+++|++++++.++++..++..++++.+.+..++
T Consensus 354 ~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~ 433 (449)
T KOG1304|consen 354 FSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVF 433 (449)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHH
Confidence 2333567778899999999999999999999999999999999999999999999999988876666778888777777
Q ss_pred hhhhhh
Q 013656 427 SKKLFS 432 (438)
Q Consensus 427 ~~~~~~ 432 (438)
+...+.
T Consensus 434 G~~~~v 439 (449)
T KOG1304|consen 434 GVFGFV 439 (449)
T ss_pred HHHHHH
Confidence 766543
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6e-52 Score=421.72 Aligned_cols=370 Identities=14% Similarity=0.156 Sum_probs=292.6
Q ss_pred cccccCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 013656 44 SFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHV 123 (438)
Q Consensus 44 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~ 123 (438)
.....+++..++.+|++|+++|+|+|+||+||+++||++|++++++++.++.||.+++.++.. + . +.
T Consensus 54 ~~~~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~----~--~-------~~ 120 (467)
T PTZ00206 54 ATIIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD----K--T-------NI 120 (467)
T ss_pred hhccCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----c--C-------CC
Confidence 344788999999999999999999999999999999999999999999999999988775421 1 1 12
Q ss_pred ccHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccc-----c-----c-cchhhHHHHHHHHhHhhccC
Q 013656 124 IQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND-----R-----L-DKRTWTYIFGACCATTVFIP 192 (438)
Q Consensus 124 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~-----~-----~-~~~~~~~i~~~~~~pl~~~~ 192 (438)
++|+|++++++||++++++.++..++++|.|++|++..++++..... + . ++..+.+++.++++|++++|
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r 200 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPR 200 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhccccc
Confidence 38999999999999999999999999999999999998876642211 0 1 12234455677889999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC---C--------CcccHHHHHHHHHhHHhhcccccchhhhhh
Q 013656 193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASH---T--------APTKLVLYFTGATNILYTFGGHAVTVEIMH 261 (438)
Q Consensus 193 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 261 (438)
++++++++|.+++.++++..+.+++.+..++.+++.+. . ......+.+.++|+++|||.||.+.|++++
T Consensus 201 ~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~ 280 (467)
T PTZ00206 201 HIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYM 280 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHH
Confidence 99999999999998877665555555555444332211 0 001123578899999999999999999999
Q ss_pred cccC--cccchhHHHHHHHHHHHHHHhhHhHHHHhhCccccccccccccC-CC-chHHHHHHHHHHHHHHHhHhhhhccH
Q 013656 262 AMWK--PQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLL-PK-NRWRDAAVILMLIHQFITFGFACTPL 337 (438)
Q Consensus 262 ~m~~--p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l-~~-~~~~~~~~~~~~i~~~~s~pl~~~p~ 337 (438)
|||+ |+|+.++...++.++.++|..+|++||++||+++ ++|++.|+ |. +....++++++.+.++++||++.+|+
T Consensus 281 ~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v--~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~ 358 (467)
T PTZ00206 281 DMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNV--TGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMAC 358 (467)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--chHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhH
Confidence 9988 5567788889999999999999999999999999 57999999 44 44457788999999999999999999
Q ss_pred HHHHHHHHcCC-CCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhh
Q 013656 338 YFVWEKVIGMH-DTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNC 416 (438)
Q Consensus 338 ~~~~~~~~~~~-~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~ 416 (438)
|+.+++.++.+ ++...++|...+..+++.++++|+.+|+++.+++++||++++.++|++|+++|++....+.++....+
T Consensus 359 r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~ 438 (467)
T PTZ00206 359 RNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFY 438 (467)
T ss_pred HHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHH
Confidence 99998887533 23344566666777777889999999999999999999999999999999999985322222222233
Q ss_pred hhhHHHHHHhhh
Q 013656 417 SYFDMLMVFWSK 428 (438)
Q Consensus 417 ~~~~~~~~~~~~ 428 (438)
+..+|....++.
T Consensus 439 ~~~~~~lli~Gv 450 (467)
T PTZ00206 439 YISTYVVLITGV 450 (467)
T ss_pred HHHHHHHHHHHh
Confidence 444566655553
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.8e-50 Score=405.05 Aligned_cols=354 Identities=24% Similarity=0.364 Sum_probs=300.6
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
|++|.+++++|++|+++|+|+|++|++|+++||++|++++++++.++.||++++.++..+.+ ++ ++..+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~--------~~~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NG--------TGRRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-cc--------ccccccc
Confidence 67899999999999999999999999999999999999999999999999999887653332 00 1122799
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccc------cccchhhHHHHHHHHhHhhccCCcchhhHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND------RLDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~------~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 201 (438)
|++++++||+++++..++..++++|.+++|++..++.+..... ..+++.|.++..++++|++++|+++++++.|
T Consensus 72 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 72 DLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred ccccccccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHh
Confidence 9999999999999999999999999999999988888754322 3566778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCCCCCCC---CcccHHHHHHHHHhHHhhcccccchhhhhhcccCcccch---hHH
Q 013656 202 FLGLGMTTYTAWYLTIAAVV--HGQVEGASHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---YIY 273 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---~~~ 273 (438)
.+|.+++.+......+.... .+...+.... .+.++.++++++|+++|||.||+++|++++|||+|++++ ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 231 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVL 231 (409)
T ss_pred hhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceee
Confidence 99999876531111121111 1122222222 235667899999999999999999999999999999987 788
Q ss_pred HHHHHHHHHHHHhhHhHHHHhhCccccccccccccCCCch-HHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcC-----
Q 013656 274 LFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNR-WRDAAVILMLIHQFITFGFACTPLYFVWEKVIGM----- 347 (438)
Q Consensus 274 ~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~-~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~----- 347 (438)
..++.+++++|+.+|+.||++||+++ ++|++.|+|+++ +..++++++.++++.+||++.+|.++.+++.+..
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~--~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSV--QGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeee--cchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 89999999999999999999999998 579999999876 6688999999999999999999999999998853
Q ss_pred -----CCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhccccccc
Q 013656 348 -----HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQ 412 (438)
Q Consensus 348 -----~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~ 412 (438)
+++..+++|..+|+.+++.+.++|..+|+++++++++|+++++.++|++|+++|++.+++++.++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~ 379 (409)
T PF01490_consen 310 RDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSF 379 (409)
T ss_pred ccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccccc
Confidence 22344678899999999999999999999999999999999999999999999999998776544
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-42 Score=316.32 Aligned_cols=364 Identities=14% Similarity=0.187 Sum_probs=305.2
Q ss_pred cccCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 013656 46 LWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (438)
Q Consensus 46 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (438)
...+++.+||..|..|++-|.=+++||+|....||+ ++..++.++.+++||..++..|. |...-+-+-.+.++ +
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CL--YE~~~dGevVrvRd---s 186 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECL--YENGEDGEVVRVRD---S 186 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhh--ccCCCCCcEEEeeh---h
Confidence 346789999999999999999999999999999998 89999999999999998765542 22111111234444 8
Q ss_pred HHHHHHhhcCCcc-chhhhhhhHHHHHHHHHHHHHHhhcccccc--cccccchhhHHHHHHHHhHhhccCCcchhhHHHH
Q 013656 126 WFEVLDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYI--NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 202 (438)
Q Consensus 126 y~~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~~li~~~~~~~~~--~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 202 (438)
|.++++.+++|.. .+.+.+.+.+.+..+|+.|++.+++.++.. +.+.+++.|+++.++.++|..++|+++-.+.+|+
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf 266 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSF 266 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHH
Confidence 9999999998875 477889999999999999999999988643 3478899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---cccHHHHHHHHHhHHhhcccccchhhhhhcccCcccchhHHHHHHHH
Q 013656 203 LGLGMTTYTAWYLTIAAVVHGQVEGASHTA---PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLY 279 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~ 279 (438)
+..++.+..-++++.+++..- .++.++. ..+..+++..+|+++|+|..|...|++...|++|.+|...+.++-+.
T Consensus 267 ~ct~sH~viN~i~v~YCLs~~--~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIA 344 (524)
T KOG4303|consen 267 FCTISHLVINLIMVLYCLSFV--SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIA 344 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHH
Confidence 988887766656666666532 2333221 23456678889999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhHHHHhhCccccccccccccCCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCC----------C
Q 013656 280 VFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMH----------D 349 (438)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~----------~ 349 (438)
+.++-..+|.+||++||+.+ +..|.+|+|+..+..++++++++.-+.|||+-+....+.+|+.+... .
T Consensus 345 AaVfK~~Fg~~~fLTf~~~T--qevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys 422 (524)
T KOG4303|consen 345 AAVFKVVFGMLGFLTFGELT--QEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYS 422 (524)
T ss_pred HHHHHHHHHHheeeeechhh--HHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeC
Confidence 99999999999999999999 57999999999999999999999999999999999999999877421 1
Q ss_pred Ccc--chhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhhhhhHHH
Q 013656 350 TKS--ICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNCSYFDML 422 (438)
Q Consensus 350 ~~~--~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (438)
.+. +.+.+.+|..+++.+.+.|+.+|.|..+++++|+++++.++||+|+++|+++.++..... |+.++..
T Consensus 423 ~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~---e~~fD~~ 494 (524)
T KOG4303|consen 423 PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNF---EKRFDQG 494 (524)
T ss_pred CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhH---HHhhhee
Confidence 122 334456899999999999999999999999999999999999999999999987766544 5666543
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-39 Score=315.41 Aligned_cols=344 Identities=18% Similarity=0.186 Sum_probs=277.9
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
.+.|..++++|+.|+++|+|+|++||||++.|++.|++++.++|+++.++.+++.++-.+.+ ++ +|+
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~----------~~---ty~ 70 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG----------ER---TYS 70 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC----------CC---CHH
Confidence 34578899999999999999999999999999999999999999999999998775532211 11 799
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccc-----cccc------cchh-hHHHHHHHHhHhhccCCcc
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDRL------DKRT-WTYIFGACCATTVFIPSFH 195 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-----~~~~------~~~~-~~~i~~~~~~pl~~~~~l~ 195 (438)
+++++.+|+.++....+....+..| ++.|++..++.+... .++. +++. |.+....++.|+++.|++.
T Consensus 71 ~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~ 149 (411)
T KOG1305|consen 71 SLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLD 149 (411)
T ss_pred HHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhh
Confidence 9999999999966655555555555 567766665543211 1111 2222 6777888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCccc--HHHHHHHHHhHHhhcccccchhhhhhcccCccc--ch
Q 013656 196 NYRIWSFLGLGMTTYTAWYLTIAAVVHGQ-VEGASHTAPTK--LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FK 270 (438)
Q Consensus 196 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~--~~ 270 (438)
++++.|.+++.+..+....+++....... .+......+.+ +.+++.++++++|||.||.+..++++|||||.+ ++
T Consensus 150 ~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~ 229 (411)
T KOG1305|consen 150 SLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQ 229 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHH
Confidence 99999999999888776666665554332 12222222222 257899999999999999999999999999887 67
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHhhCccccccccccccCCCchH-------HHHHHHHHHHHHHHhHhhhhccHHHHHHH
Q 013656 271 YIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRW-------RDAAVILMLIHQFITFGFACTPLYFVWEK 343 (438)
Q Consensus 271 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~~-------~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 343 (438)
++...+...+..+|...|.+||+.|||.+ .+|++.++|...- ...++..+.++++..+|+..+|+|..++.
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v--~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~ 307 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDLV--KGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDE 307 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecccc--hHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 77778888899999999999999999999 5799999986332 36799999999999999999999999887
Q ss_pred HHcCCCC----ccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcc
Q 013656 344 VIGMHDT----KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (438)
Q Consensus 344 ~~~~~~~----~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~ 407 (438)
.+..+.+ .+..++++++..++..+.+.|+.+|+++++.+++||++++.++||+|+++|++..|+
T Consensus 308 ~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 308 LLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred HhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 7753322 445667789999999999999999999999999999999999999999999999887
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.98 E-value=2.1e-30 Score=259.23 Aligned_cols=372 Identities=16% Similarity=0.132 Sum_probs=275.4
Q ss_pred ccCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 47 WHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
.++.+.+++++++.+++||+|+|+||++++..|++.+++++++.+.+++++.+++.++..++++++ .+|
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-----------~~~ 74 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-----------ASI 74 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-----------ccH
Confidence 345678899999999999999999999999999999999999999999999998887654432210 169
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccc-----ccc-ccchhhHHHHHHHHhHhhccCCcchhhHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDR-LDKRTWTYIFGACCATTVFIPSFHNYRIW 200 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-----~~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 200 (438)
.+++++.+||+|+++..+...+.+++.+.+|.+..++.+... ..+ .+++.+.+++..++.++++.++...+|..
T Consensus 75 ~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~t 154 (415)
T COG0814 75 TSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKIT 154 (415)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 999999999999999999999999999999999888776422 122 67777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc--chhHHHH
Q 013656 201 SFLGLGMTTYTAWYLTIAAVVHGQVEGAS---HTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYIYLF 275 (438)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~--~~~~~~~ 275 (438)
+.+....+.+..+...... .+-+.++.. ...+..+.....++|+++|||+||+++|+++++|+++.+ .+|+...
T Consensus 155 s~l~~~~v~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~ 233 (415)
T COG0814 155 SLLVFGKVIYLVLLVVYLI-PHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILI 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHHh-cccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHH
Confidence 9998887665443322221 111111110 011355667789999999999999999999999998666 8999999
Q ss_pred HHHHHHHHHHhhHhHHHHhhCccccccccccccCCCchHHH--------------HHHHHHHHHHHHhHhhhhccHHHHH
Q 013656 276 ATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRD--------------AAVILMLIHQFITFGFACTPLYFVW 341 (438)
Q Consensus 276 s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~~~~--------------~~~~~~~i~~~~s~pl~~~p~~~~~ 341 (438)
+.....++|...+..+|..+|+.++ +|++++.+++.... ..+++..+.+.+||--.....++..
T Consensus 234 ~~~~~~vlyi~~~~~~~~~~~~~~~--~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 234 GSLIALVLYILVGFFVFGCFGSLVF--GNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccH--HHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 9999999999999999999999984 68888887544332 3444444545555444444555555
Q ss_pred HHHHcCCC-C---ccchh--hhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchh
Q 013656 342 EKVIGMHD-T---KSICL--RALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKN 415 (438)
Q Consensus 342 ~~~~~~~~-~---~~~~~--r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~ 415 (438)
++.++..+ + +.... .....+..++.+..++...|..+.+.+.+|+..+..+.++.|...+.+....+..+.
T Consensus 312 ~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g--- 388 (415)
T COG0814 312 ADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGG--- 388 (415)
T ss_pred hHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCC---
Confidence 55554311 1 11111 122333445566777778888888888888888888889988888866655554443
Q ss_pred hhhhHHHHHHhhhhhhhhhh
Q 013656 416 CSYFDMLMVFWSKKLFSFVF 435 (438)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~ 435 (438)
++...++.++++..+.+..+
T Consensus 389 ~~~~~~~v~~~Gi~~~~~~~ 408 (415)
T COG0814 389 NFLLLLLVLLFGILVILSPF 408 (415)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 12466777777766665544
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=3.8e-24 Score=212.74 Aligned_cols=347 Identities=13% Similarity=0.132 Sum_probs=244.8
Q ss_pred CccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 013656 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (438)
..+.+++.+.+..++||+|+|+||++.+.+|+.++++.+++.+.++++|..++.+...+.++ + .+|.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----------~-~~~~~ 69 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----------G-SSLTS 69 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------C-CCHHH
Confidence 45778999999999999999999999999999999999999999999998888865433211 1 17999
Q ss_pred HHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc-----ccccchhhHHHHHHHHhHhhccCCcchhhHHHHH
Q 013656 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (438)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~-----~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 203 (438)
++++.+||+|+++..+...+..+...++|....++.+.... .+.+++.-..++.++........ -+...+.+-.
T Consensus 70 ~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n~~ 148 (394)
T PF03222_consen 70 MAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFG-TKAVDRINRV 148 (394)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 99999999999998888888889999999988777654321 22333433334444433333332 1122333222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHhHHhhcccccchhhhhhccc-CcccchhHHHHHHHHH
Q 013656 204 GLGMTTYTAWYLTIAAVVHGQVEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLFATLYV 280 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~s~~~~ 280 (438)
-+...+.....+....+.+-+.++... +.+.++...+.++|++++||+.|+++|++.+.++ |++|.++++..+..+.
T Consensus 149 lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~ 228 (394)
T PF03222_consen 149 LVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIP 228 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 121111111112222222222222222 2245677788999999999999999999999998 5777899999998888
Q ss_pred HHHHHhh--HhHHHH---------hhCccccccccccccCCCchH-HHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCC
Q 013656 281 FTLTIPS--ATAVYW---------SFGDQLLNHSNAFSLLPKNRW-RDAAVILMLIHQFITFGFACTPLYFVWEKVIGMH 348 (438)
Q Consensus 281 ~~~y~~~--g~~gy~---------~fG~~~~~~~nil~~l~~~~~-~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 348 (438)
.++|++. .++|-. .-+++...-...+.+..++.+ ..++.++-.+++.+||--....++|.+++.++.+
T Consensus 229 lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~ 308 (394)
T PF03222_consen 229 LVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK 308 (394)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888874 334311 111111000123334434444 4679999999999999999999999999998863
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccc
Q 013656 349 DTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRKASAR 411 (438)
Q Consensus 349 ~~~~~~~r~~~r~~~v~~~~~la~~ip~-~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~ 411 (438)
+....|........++++++|...|+ |...+++.| ....++..++|+++.++.|+++..+
T Consensus 309 --~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~ 369 (394)
T PF03222_consen 309 --NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQ 369 (394)
T ss_pred --ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCC
Confidence 23455666667778899999999997 889999999 8889999999999999988766543
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=9.4e-24 Score=208.16 Aligned_cols=345 Identities=17% Similarity=0.116 Sum_probs=246.3
Q ss_pred ccCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 47 WHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
.++++.+++.+.+..++||+|+|++|++-+++|+.+++++++++++++.||..++.++..+++ +.. ++
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----------~g~-~~ 75 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----------IGS-SF 75 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCC-CH
Confidence 456889999999999999999999999999999999999999999999999999887643321 111 78
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc----ccccchhhHHHHHHHHhHhhccCCcchhhHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 202 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~----~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 202 (438)
..++++.+||+|+.+..++..+..+...++|+..+++.+.... .+.+...-.+++.++.-...+.. .+...+.+-
T Consensus 76 ~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~ 154 (414)
T PRK10483 76 DTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLS-TKAVSRMTA 154 (414)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHH
Confidence 9999999999999988888888899999999888877664322 23344444556666665555543 244444443
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccC-cccchhHHHHHHH
Q 013656 203 LGLGMTTYTAWYLTIAAVVHGQVEGA---SHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATL 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~s~~ 278 (438)
+-+...+.+.+..+.....+-+.++. ....+..+...+.++|++++||+.|+++|++.+.+++ ++|.++++..+..
T Consensus 155 ~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~ 234 (414)
T PRK10483 155 IVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTL 234 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHH
Confidence 22222221111111221122221111 1111223445678999999999999999999999875 6788999999999
Q ss_pred HHHHHHHh--hHhHHHHh---------hCcccccccccccc-CCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHc
Q 013656 279 YVFTLTIP--SATAVYWS---------FGDQLLNHSNAFSL-LPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIG 346 (438)
Q Consensus 279 ~~~~~y~~--~g~~gy~~---------fG~~~~~~~nil~~-l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 346 (438)
+.+++|++ ..+.|-.. -|++..+--..+.+ .+++....++.++..+.+.+||--.....+|.+.+.++
T Consensus 235 Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k 314 (414)
T PRK10483 235 MALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFG 314 (414)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988 33333222 12221000011112 22234446789999999999999999999999999998
Q ss_pred CCCCccchhhhhhhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHhHHHHhHHHHHHHHHhcc
Q 013656 347 MHDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (438)
Q Consensus 347 ~~~~~~~~~r~~~r~~~v~~~~~la~~ip~-~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~ 407 (438)
.+++ ...|........+++.++|...|+ |-..++..|.. ..++..++|+++.++.||+
T Consensus 315 ~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 315 FDDS--AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred CCCc--cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 6543 445666677888999999999997 88999999976 6677789999999999865
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=2.7e-23 Score=204.72 Aligned_cols=341 Identities=15% Similarity=0.097 Sum_probs=240.9
Q ss_pred cHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHH
Q 013656 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (438)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 130 (438)
+.+++.+.+..++||+|+|++|++-+++|+.+++++++++++++.||..++.++..+++ ++. ++..++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----------~g~-~l~tma 77 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----------VGS-SFNTIT 77 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCC-CHHHHH
Confidence 67788899999999999999999999999999999999999999999999887643331 111 688999
Q ss_pred HhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc-----ccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHH
Q 013656 131 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (438)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~-----~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 205 (438)
++.+||+|+++..+...+..+..+++|+..+++.+.... .+.+.+.-.++++.+.-+..+..+ +...+.+-+-.
T Consensus 78 ~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~ 156 (415)
T PRK09664 78 KDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSLFL 156 (415)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHH
Confidence 999999999998888888899999999988887764321 133444444566666666655543 44444442222
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCC----c-ccHHHHHHHHHhHHhhcccccchhhhhhcccC-cccchhHHHHHHHH
Q 013656 206 GMTTYTAWYLTIAAVVHGQVEGASHTA----P-TKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLY 279 (438)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~s~~~ 279 (438)
...+.+.+..+.....+-+.++..... . ..+...+.++|++++||+.|+++|++.+.+++ +++.++++..+..+
T Consensus 157 ~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 157 GLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 221111111112111121111111110 0 01234678899999999999999999999875 56788888888888
Q ss_pred HHHHHHh--hHhHHH---------HhhCccccc-cccccccCCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcC
Q 013656 280 VFTLTIP--SATAVY---------WSFGDQLLN-HSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGM 347 (438)
Q Consensus 280 ~~~~y~~--~g~~gy---------~~fG~~~~~-~~nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 347 (438)
..++|++ ..++|- ...|++..+ -.....+.+.+....++.++..+.+.+||--.....+|.+.+.++.
T Consensus 237 pLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~ 316 (415)
T PRK09664 237 ALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI 316 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888865 344442 122322210 0011123233334467999999999999999999999999999986
Q ss_pred CCCccchhhhhhhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHhHHHHhHHHHHHHHHhcc
Q 013656 348 HDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (438)
Q Consensus 348 ~~~~~~~~r~~~r~~~v~~~~~la~~ip~-~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~ 407 (438)
+++ ...|.....+..+++.++|...|+ |-..++..|.. ..++..++|+++-++.||+
T Consensus 317 ~~~--~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 317 DNS--HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred CCc--cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 543 345666677888999999999997 89999999996 5688889999999999965
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=1.6e-22 Score=200.28 Aligned_cols=342 Identities=14% Similarity=0.128 Sum_probs=238.0
Q ss_pred ccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHH
Q 013656 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (438)
++.+++.+.+..++||+|+|++|.+-+.+|++++++++++++.++.|+.+++.++..++ +++ .++.++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-----~~~-------~~~~~~ 70 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-----PAD-------TGLGTL 70 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCC-------CCHHHH
Confidence 36788999999999999999999999999999999999999998999998877642111 111 168999
Q ss_pred HHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccc-----ccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHH
Q 013656 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-----~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 204 (438)
+++.+||+|+++..+......+..+.+|...+++.+.. .+.+.+...+.+++.++.....+..+ +...+.+-+-
T Consensus 71 a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~-~~v~~~n~~L 149 (403)
T PRK15132 71 AKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGT-SSVDLFNRFL 149 (403)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccH-HHHHHHHHHH
Confidence 99999999999988888888999999999887766532 22244444555555555444444332 3333332221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccC-cccchhHHHHHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFTL 283 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~s~~~~~~~ 283 (438)
+.......+......+.+-+.++.... +.+..-.+.++|++++||+.|+++|++.+.+++ ++|.+|++..+..+.+++
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111111111110 111113678899999999999999999999875 567899999999998988
Q ss_pred HHhhHhHHHHhhCccc-----cccc---cccccC----CCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCCCCc
Q 013656 284 TIPSATAVYWSFGDQL-----LNHS---NAFSLL----PKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTK 351 (438)
Q Consensus 284 y~~~g~~gy~~fG~~~-----~~~~---nil~~l----~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~ 351 (438)
|++.=......-+.+. .++. +.++.+ +.+....++.++..+++.+||--.....+|.+.+.++.+++
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~- 307 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT- 307 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-
Confidence 8884433333322221 0011 222222 23444467999999999999999999999999999875432
Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHhHHHHhHHHHHHHHHhccc
Q 013656 352 SICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (438)
Q Consensus 352 ~~~~r~~~r~~~v~~~~~la~~ip~-~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~ 408 (438)
...|.....+..++++++|...|+ |....++.|. ....+.+++|+++.++.++++
T Consensus 308 -~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 308 -VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred -ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 334777778888999999999997 8889999886 568899999999999998754
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.90 E-value=7.9e-22 Score=197.02 Aligned_cols=336 Identities=15% Similarity=0.053 Sum_probs=236.2
Q ss_pred HHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcC
Q 013656 56 WFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 135 (438)
Q Consensus 56 ~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G 135 (438)
....+++++|+|++++|.++++.|...+++.+++.++++.++..++.++. ++..+ .+ ++.+.+++.+|
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~----~~~p~-----~~---~~~~~~~~~~G 70 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVY----LTYPG-----GA---SFNTIAKDLLG 70 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCC-----CC---CHHHHHHHHhC
Confidence 34578999999999999999999999999999999999999887766543 22211 11 69999999999
Q ss_pred CccchhhhhhhHHHHHHHHHHHHHHhhccccc-----ccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHHHH
Q 013656 136 PYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY 210 (438)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-----~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 210 (438)
|+++++..+......+..+.+|.+..++.+.. .+...+...+.+++.+++.++.. +..+...+++.+.....+.
T Consensus 71 ~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 71 KTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence 99999887777777888888888766654422 12223333344444444444444 3456666666655554433
Q ss_pred HHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHhHHhhcccccchhhhhhccc-CcccchhHHHHHHHHHHHHHHhh
Q 013656 211 TAWYLTIAAVVHGQVEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLFATLYVFTLTIPS 287 (438)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~s~~~~~~~y~~~ 287 (438)
....+++....+.+.++... ..+..+.+.+.+++...++|++|.+++++.++++ ++|+.+|+...+..++.++|++.
T Consensus 150 ~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333322211110 1123556778899999999999999999999997 56678999999999999999987
Q ss_pred HhHHHHhhCccccc-----ccc------cccc-CCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCCCCccchh
Q 013656 288 ATAVYWSFGDQLLN-----HSN------AFSL-LPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICL 355 (438)
Q Consensus 288 g~~gy~~fG~~~~~-----~~n------il~~-l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~ 355 (438)
........+.+..+ .+| .... .+.+....++.++..+.+.+++.-...+.+|...+.++.+++ +.+
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~ 307 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKG 307 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCC
Confidence 66655554433210 011 1222 233334467889999999999999999999999888876432 233
Q ss_pred hhhhhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHhHHHHhHHHHHHHHHhcc
Q 013656 356 RALARLPVVIPIWFLAIIFPFFG-PINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (438)
Q Consensus 356 r~~~r~~~v~~~~~la~~ip~~~-~i~~lvGa~~~~~l~~ilP~l~~~~~~~~ 407 (438)
|+.......+++.++|...|+.. ..++..| ++...+.+++|++++++.||+
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 67777788889999999999855 8999999 888899999999999987754
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.82 E-value=8.7e-18 Score=165.90 Aligned_cols=357 Identities=11% Similarity=0.050 Sum_probs=231.3
Q ss_pred HHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCC
Q 013656 57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP 136 (438)
Q Consensus 57 ~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 136 (438)
+.+.+++||+|+|+||-.....|.++.++++++.+.+++++.+++.+.....+ +++ .++.+++++.+||
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~----~~~-------~~i~~v~~~~lG~ 94 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS----NPS-------GNITETVEEHFGK 94 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCC-------CCHHHHHHHHcCh
Confidence 77999999999999999999999999999999999999999888776532221 111 1699999999999
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhccccc-----ccc-cccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHHHH
Q 013656 137 YWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----IND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY 210 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-----~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 210 (438)
+|+.+..+.....++..+.+|.....+.+.. .+. +.++....+++.+++.......+ +..-+.+-+=+...+.
T Consensus 95 ~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 95 TGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVWPFIA 173 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH
Confidence 9999888877777888888887655554432 221 33433444445555444444432 3333333221111111
Q ss_pred HHHHHHHHHHhhcCCCCCCC--------CCc-ccHHHHHHHHHhHHhhcccccchhhhhhc----cc-----C--cccch
Q 013656 211 TAWYLTIAAVVHGQVEGASH--------TAP-TKLVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K--PQKFK 270 (438)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~----m~-----~--p~~~~ 270 (438)
..+.+.+..+.+=+.++... ... ........++|++++||+-|+++|++... .+ | ++|.+
T Consensus 174 ~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ 253 (443)
T PRK13629 174 SLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCS 253 (443)
T ss_pred HHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHH
Confidence 11111111111111111110 001 11134678899999999999999999998 43 3 45677
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHhhCcccc-----ccccccc----cCCC---------chHHHHHHHHHHHHHHHhHhh
Q 013656 271 YIYLFATLYVFTLTIPSATAVYWSFGDQLL-----NHSNAFS----LLPK---------NRWRDAAVILMLIHQFITFGF 332 (438)
Q Consensus 271 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~-----~~~nil~----~l~~---------~~~~~~~~~~~~i~~~~s~pl 332 (438)
+++.++..+.+++|++.-+.+-..-+++.. .+.|++. .+++ +.......++..+++.+||--
T Consensus 254 rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlG 333 (443)
T PRK13629 254 QIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFG 333 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888865555554443321 1233222 2333 223456888888899999999
Q ss_pred hhccHHHHHHHHH-c---CCCC---ccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHh
Q 013656 333 ACTPLYFVWEKVI-G---MHDT---KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY 405 (438)
Q Consensus 333 ~~~p~~~~~~~~~-~---~~~~---~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~ 405 (438)
.....+|.++... + .+++ +.+..+....+.+.+.++.++..-|++-.+++-+|+-....+.|++|...-+|..
T Consensus 334 v~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp 413 (443)
T PRK13629 334 HYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP 413 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH
Confidence 9999999888776 2 1211 2234455666677888999999999999999977777777888999999998877
Q ss_pred cccccccchhhhhhHHHHHHhhhh
Q 013656 406 RKASARQVKNCSYFDMLMVFWSKK 429 (438)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~ 429 (438)
.-++.|. +..++...+.+.-
T Consensus 414 ~l~~yr~----~~~n~fv~~~Gl~ 433 (443)
T PRK13629 414 SLAKYRG----RLDNVFVTVIGLL 433 (443)
T ss_pred HHHHhCC----CchhHHHHHHHHH
Confidence 6666553 3344555444443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.77 E-value=1.3e-16 Score=158.61 Aligned_cols=345 Identities=12% Similarity=0.037 Sum_probs=224.3
Q ss_pred HHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcC
Q 013656 56 WFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 135 (438)
Q Consensus 56 ~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G 135 (438)
.+.+.++++|+|+|++|..-++.||+..++..++...+++++..++.+.....+ .+ . .++.|++++.+|
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~---~p-----~---~~i~~~~~~~fG 77 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK---NP-----C---EDITEVVEEHFG 77 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CC-----C---CCHHHHHHHHcC
Confidence 467999999999999999999999998888888877777777776665432211 11 1 169999999999
Q ss_pred CccchhhhhhhHHHHHHHHHHHHHHhhccccc-c----cccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHHHH
Q 013656 136 PYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-I----NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY 210 (438)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~----~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 210 (438)
|+++++..+....+.+..+.+|.....+.+.. + ..+.+.+....+...+.+-.......+.+.+++.+-+...+.
T Consensus 78 k~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii 157 (397)
T TIGR00814 78 KNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVL 157 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 99999888887778888888887665554321 1 112223322222222222233333455555555443322222
Q ss_pred HHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHhHHhhcccccchhhhhhc----cc--C--cccchhHHHHHHHHH
Q 013656 211 TAWYLTIAAVVHGQVEGASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHA----MW--K--PQKFKYIYLFATLYV 280 (438)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~----m~--~--p~~~~~~~~~s~~~~ 280 (438)
....+.+..+.+-+.++....+ ...+.+...+++..++||.+|+++|++..+ .+ | ++|.+|+...+..+.
T Consensus 158 ~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~ 237 (397)
T TIGR00814 158 ILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLIL 237 (397)
T ss_pred HHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 2212222333222222221111 123466889999999999999999999833 33 2 445678888888888
Q ss_pred HHHHHhhHhHHHHhhCccccc---ccc--ccc----cCCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHH-c---C
Q 013656 281 FTLTIPSATAVYWSFGDQLLN---HSN--AFS----LLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVI-G---M 347 (438)
Q Consensus 281 ~~~y~~~g~~gy~~fG~~~~~---~~n--il~----~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~-~---~ 347 (438)
+++|+..-+.+....+.+... ++| .+. ..+.+....+..++..+++.+||--....++|.+++.+ + .
T Consensus 238 ~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~ 317 (397)
T TIGR00814 238 VATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM 317 (397)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 888888666665555543310 122 222 22334444678888888999999999999999888877 2 1
Q ss_pred CC--CccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccc
Q 013656 348 HD--TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASAR 411 (438)
Q Consensus 348 ~~--~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~ 411 (438)
++ .+.+..+........+.++.++..-|++-.+++-+|+-....+.|++|...-+|...-++.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~ 383 (397)
T TIGR00814 318 KGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR 383 (397)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC
Confidence 11 12233344566677788999999999999999977777777888999999988776655554
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.45 E-value=2.8e-11 Score=120.02 Aligned_cols=338 Identities=15% Similarity=0.118 Sum_probs=182.0
Q ss_pred CccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 013656 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (438)
+.|.+|....+.++++|+|++.+|...++.+---+.+..++.+++......+..+.. ++.+ + + +..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~----~~~p--~-----~--~~~~ 68 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIM----SKFP--E-----K--NFSE 68 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHH----HHCC--C-----C--CHHH
Confidence 468889999999999999999999988775433455556666666655554444332 2221 1 1 5778
Q ss_pred HHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccc-ccccccchhhHH-HHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKRTWTY-IFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
..++.+||+.+++.......+....+.......++.+.. ..++. ..|.+ +..++..-....+.++...+.+.+-..
T Consensus 69 ~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t--p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 69 ILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRT--PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI 146 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 999999999887755554444444433222222222211 11222 22322 222222233344556666666554443
Q ss_pred HHHHH-HHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH-hHHhhcccccchhhhhhcccCcccchhHHHHHHHHHHHHH
Q 013656 207 MTTYT-AWYLTIAAVVHGQVEGASHTAPTKLVLYFTGAT-NILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLT 284 (438)
Q Consensus 207 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y 284 (438)
..+.. ...+......+.+..+.....+.++.+...+.- ...++|.+..+...+..++|+|++.+|+...+...+.++|
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly 226 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLY 226 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 33222 111111111111111211111234455555443 6789998888888888999999999999999999999999
Q ss_pred HhhHhHHHHhhCcccccc--cccc---ccCCCchHH----HHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCCCCccchh
Q 013656 285 IPSATAVYWSFGDQLLNH--SNAF---SLLPKNRWR----DAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICL 355 (438)
Q Consensus 285 ~~~g~~gy~~fG~~~~~~--~nil---~~l~~~~~~----~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~ 355 (438)
...-......+|.+...+ -+.. +...-+++. .+.-..-....+....+........+.+.++.++.+.
T Consensus 227 ~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--- 303 (359)
T TIGR00912 227 ILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI--- 303 (359)
T ss_pred HHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch---
Confidence 988887777787643210 1111 111112221 1233334445555555556666666777766433211
Q ss_pred hhhhhHHHHHHHHHHHHhcCcchhHHHHHh---hHHHhHHHHhHHHHHHHHHhccc
Q 013656 356 RALARLPVVIPIWFLAIIFPFFGPINSAVG---ALLVSFTVYIIPSLAHMLTYRKA 408 (438)
Q Consensus 356 r~~~r~~~v~~~~~la~~ip~~~~i~~lvG---a~~~~~l~~ilP~l~~~~~~~~~ 408 (438)
... ++......++ ..|+-..-..... ...+....+++|.++.+....+|
T Consensus 304 -~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik~ 355 (359)
T TIGR00912 304 -LIL--PVLMVIFSIS-FFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFIIVKIKN 355 (359)
T ss_pred -hHH--HHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1111222222 3565222122222 12334566788999887766444
No 17
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.41 E-value=1.4e-09 Score=111.28 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=127.0
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhh-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
++.+.++.....++++||+|++..| .+.+++|-. +++..++.+++.... ..++.|..++....+ ..
T Consensus 12 ~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~----a~~~aEl~s~~P~~G--------g~ 78 (452)
T TIGR01773 12 NGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFI----MRMLGEMAVANPDTG--------SF 78 (452)
T ss_pred CcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHH----HHHHHHHHHhcCCCC--------CH
Confidence 4577888899999999999999999 778888864 565555555554433 333335544332222 35
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
.+.+++.+||...+..-..................++.+.+..++.+...+.+++..+...+. ....+....+.....+
T Consensus 79 ~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~~~ 157 (452)
T TIGR01773 79 STYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTLTN-LYSVKSYGEFEFWFAL 157 (452)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH-HHhcchhhHHHHHHHH
Confidence 567788899988776554444333333333323333333332233322222222222221211 1223333333332222
Q ss_pred HHHHHHHHHHHHHH--hhcCCC-----CCCC----C--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhH
Q 013656 207 MTTYTAWYLTIAAV--VHGQVE-----GASH----T--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (438)
Q Consensus 207 ~~~~~~~~~~~~~~--~~~~~~-----~~~~----~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~ 272 (438)
..+.....+++..+ ..+..+ +.+. . .|..+.++..++....|+|.|-.....+.+|+|||+| .+|+
T Consensus 158 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrA 237 (452)
T TIGR01773 158 IKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRA 237 (452)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHH
Confidence 21111111111111 111111 0110 1 1334456888899999999999999999999999986 8898
Q ss_pred HHHHHHHHHHHHHhhHhHH
Q 013656 273 YLFATLYVFTLTIPSATAV 291 (438)
Q Consensus 273 ~~~s~~~~~~~y~~~g~~g 291 (438)
+..++..+.++|+......
T Consensus 238 i~~~~~~~~~~y~l~~~~~ 256 (452)
T TIGR01773 238 TNSVIWRIIVFYLGSIFIV 256 (452)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8777777778888754433
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=99.39 E-value=4.9e-10 Score=113.89 Aligned_cols=343 Identities=7% Similarity=-0.023 Sum_probs=171.6
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQ-MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
++.+.++.+...+++++|+|++.+|..... .|.. .++..++.+++.... ..++.|..++..+.+ ..
T Consensus 3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~----a~~~~el~~~~p~~G--------g~ 69 (429)
T TIGR00909 3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFI----ALVYAELAAMLPVAG--------SP 69 (429)
T ss_pred ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHH----HHHHHHHHhhcCCCC--------cc
Confidence 457888999999999999999999976554 3432 344444444444333 223335544433222 23
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccc-c---ccccchh-----------hHHHHHHHHhHhhcc
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-N---DRLDKRT-----------WTYIFGACCATTVFI 191 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-~---~~~~~~~-----------~~~i~~~~~~pl~~~ 191 (438)
.+-.++.+||+.++..-....+........+....++.+... . .+.+... +..+....+.-..-.
T Consensus 70 y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 149 (429)
T TIGR00909 70 YTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILY 149 (429)
T ss_pred eeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHH
Confidence 345566789987765444433322222222222222211110 0 1111100 111122222222333
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-ch
Q 013656 192 PSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 270 (438)
Q Consensus 192 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~ 270 (438)
+..+...+++.+.....+...+.+++.+..+...++.+...+.+..++..++....|+|.+........+|+|||+| .+
T Consensus 150 ~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip 229 (429)
T TIGR00909 150 LGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIP 229 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcccccc
Confidence 34555555555544433322222223333332222332223445567788899999999999999999999999976 79
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHhhCccccc-ccc----ccccCCCchHHHHHHHHHHHHHHHhHhhhh-ccHHHHHH--
Q 013656 271 YIYLFATLYVFTLTIPSATAVYWSFGDQLLN-HSN----AFSLLPKNRWRDAAVILMLIHQFITFGFAC-TPLYFVWE-- 342 (438)
Q Consensus 271 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~-~~n----il~~l~~~~~~~~~~~~~~i~~~~s~pl~~-~p~~~~~~-- 342 (438)
|++..++..+.++|.+.........+.+... ++. +......+....+..+...+..+.+.-... .+.|....
T Consensus 230 ~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 230 KAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766554332222110 011 111222233334455556665555554432 23333221
Q ss_pred ------HHHc-CCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhccc
Q 013656 343 ------KVIG-MHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (438)
Q Consensus 343 ------~~~~-~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~ 408 (438)
+.++ .|++.+...+...-. ...+.++ ....+++.+.++.+ ....+.|++.++..++.++++
T Consensus 310 ~dg~lP~~~~~~~~~~~~P~~a~~~~--~~i~~~~-~~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 310 RDGLLPGSLSKVHPKTGTPHMSIIIF--SLTAALL-ASLVPLEGLAELTS--IGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred cCCCCcHHHHHcCCCCCCcHHHHHHH--HHHHHHH-HHHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 1222 222222333322111 1111111 22345666666443 233567777777777776544
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=99.38 E-value=1e-09 Score=111.79 Aligned_cols=232 Identities=13% Similarity=-0.043 Sum_probs=121.2
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
++.+.++++...+++++|+|++.+|..+++.|-. +++..++.+++..... .++.|..++...++ ...
T Consensus 6 ~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~~~~~a----~~~aeL~~~~P~~G--------G~y 72 (438)
T PRK10655 6 NKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVGSMALA----YAFAKCGMFSRKSG--------GMG 72 (438)
T ss_pred CcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHH----HHHHHHhhhCCCCC--------chH
Confidence 4578889999999999999999999999988863 4554455444433332 33334443332222 234
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccc-ccccccchhhHHHHHHHHhHhh--ccCCcchhhHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKRTWTYIFGACCATTV--FIPSFHNYRIWSFLG 204 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~~~~~i~~~~~~pl~--~~~~l~~l~~~s~~~ 204 (438)
.-+++.+||..+++.-..............-+...+.... .+...+.....++...++.... -.+..+....+..+.
T Consensus 73 ~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 73 GYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVT 152 (438)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5666789998776544333222221111111111111111 1111111111111111111111 112223233332222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC----CCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVHGQVEGAS----HTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~ 279 (438)
....+...+.+.+.......+++.. ......+..+..++....|+|.|-..+..+.+|+|||+| .+|++..+...
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~ 232 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLG 232 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHH
Confidence 2222111111222222211121111 111112345667788889999999999999999999986 89999999999
Q ss_pred HHHHHHhhHhHHH
Q 013656 280 VFTLTIPSATAVY 292 (438)
Q Consensus 280 ~~~~y~~~g~~gy 292 (438)
+.++|++......
T Consensus 233 ~~~~Y~l~~~~~~ 245 (438)
T PRK10655 233 AAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988665444
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=99.37 E-value=1.8e-09 Score=110.53 Aligned_cols=231 Identities=11% Similarity=0.022 Sum_probs=124.5
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFS-QMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
++.+.++..+..++.++|+|++..|-... ++|- ..++..++.+++.... ..++.|..++....+ ..
T Consensus 21 r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~----~~~~aEl~~~~P~~G--------g~ 87 (458)
T PRK10249 21 RGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLI----MRQLGEMVVEEPVSG--------SF 87 (458)
T ss_pred ccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHH----HHHHHHHHHhCCCCC--------CH
Confidence 45777888899999999999999886555 4564 3455555555554433 333345554433222 35
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
...+++.+|+.+.++.-....+.............+..+.+..++.+...+..++..+...+.. ...+..+.+......
T Consensus 88 ~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~-~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 88 AHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNL-VNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHH
Confidence 5677888999877765444333222222333333332222222333322222222222222222 223333333222111
Q ss_pred HHHHHHHHHHHHH--H-hhcCC---CCCC----CC--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHH
Q 013656 207 MTTYTAWYLTIAA--V-VHGQV---EGAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY 273 (438)
Q Consensus 207 ~~~~~~~~~~~~~--~-~~~~~---~~~~----~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~ 273 (438)
..+...+.+++.+ + ..+.+ .+.+ .. .|..+..+..++....|+|.|-..+....+|+|||+| .+|++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 1111111111111 1 11111 1111 11 1345667788899999999999999999999999998 79999
Q ss_pred HHHHHHHHHHHHhhHhHHH
Q 013656 274 LFATLYVFTLTIPSATAVY 292 (438)
Q Consensus 274 ~~s~~~~~~~y~~~g~~gy 292 (438)
..++..+.++|........
T Consensus 247 ~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888877544433
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.37 E-value=2.1e-09 Score=109.77 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=121.7
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
++.+.++++...+++++|+|++.+|...++.|-. .+...++.++... .+.-++.|..++....+ ...
T Consensus 8 ~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l----~~al~~aEL~s~~P~aG--------G~y 74 (445)
T PRK10644 8 HKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGAL----GLSMVYAKMSSLDPSPG--------GSY 74 (445)
T ss_pred CCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHhhCCCCC--------Chh
Confidence 4578889999999999999999999999987742 2333333333322 22333345554432222 122
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccccccc-chhhHHHHHHHHhHhhcc--CCcchhhHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLD-KRTWTYIFGACCATTVFI--PSFHNYRIWSFLG 204 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~--~~l~~l~~~s~~~ 204 (438)
.-+++.+||...+..-....+..............+...+..+..+ .....++...++..++.+ ...+....+..+.
T Consensus 75 ~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 75 AYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 3377779998776543333322111111111111111111111111 111112112222222222 2233333333322
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC----CCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVHGQVEG----ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~ 279 (438)
....+...+.+.+........++ ........+..+..++....|+|.|-.......+|+|||+| .+|++..++..
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i 234 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHH
Confidence 22222111111222221111111 11111123345566777889999999999999999999986 89999999999
Q ss_pred HHHHHHhhHhHHHHhhC
Q 013656 280 VFTLTIPSATAVYWSFG 296 (438)
Q Consensus 280 ~~~~y~~~g~~gy~~fG 296 (438)
+.++|.+..+.....-+
T Consensus 235 ~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 235 AAVCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999987766443333
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=99.36 E-value=3.8e-09 Score=109.21 Aligned_cols=344 Identities=10% Similarity=0.058 Sum_probs=164.3
Q ss_pred ccCccHHHHHHHHHhhhhhhhhchhhH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 013656 47 WHGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (438)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (438)
.++.+.++.....++.+||+|++..|. +.+++|-. +++..++.+++....+ .++-|...+....+ .
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~----~slaELas~~P~aG--------g 93 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFSFFIL----RALGELVLHRPSSG--------S 93 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHH----HHHHHHHHhCCCCC--------C
Confidence 356788889999999999999988887 77777753 4555555555444433 33335544332222 3
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 205 (438)
...-+++.+|++..++.-....+.............+....+.....+...|......+. .+..+ |+...+..+.+..
T Consensus 94 ~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~i-N~~gvk~~~~i~~ 171 (499)
T PRK15049 94 FVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALT-IVGTM-NMIGVKWFAEMEF 171 (499)
T ss_pred HHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH-HHHHH-HHHHHHHHHHHHH
Confidence 455677888998766544333322111111111111111111111011223332211111 11111 2222333332222
Q ss_pred HHH---HHHHHHHHHHHH---hhcCCC-----CCC------CCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc
Q 013656 206 GMT---TYTAWYLTIAAV---VHGQVE-----GAS------HTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 268 (438)
Q Consensus 206 ~~~---~~~~~~~~~~~~---~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 268 (438)
... +...+.+++.++ ..+.+. +.. ...|..+..++.++....|+|.|-..+....+|+|||+|
T Consensus 172 ~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r 251 (499)
T PRK15049 172 WFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT 251 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh
Confidence 211 111111111111 112111 010 011333444566667889999999999999999999998
Q ss_pred -chhHHHHHHHHHHHHHHhhHhHHHHhhCccccc--cccc---cccCCCchHHHHHHHHHHHHHHHhHhhhh-ccHHHHH
Q 013656 269 -FKYIYLFATLYVFTLTIPSATAVYWSFGDQLLN--HSNA---FSLLPKNRWRDAAVILMLIHQFITFGFAC-TPLYFVW 341 (438)
Q Consensus 269 -~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~--~~ni---l~~l~~~~~~~~~~~~~~i~~~~s~pl~~-~p~~~~~ 341 (438)
.+|++..++..+.++|+..........+.+..+ .++. ......+....+.++..++..+.+.--.. .+.|..+
T Consensus 252 ~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~ 331 (499)
T PRK15049 252 MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILR 331 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998888887777887655444443322110 1111 12222222334445555555554443322 2222221
Q ss_pred H--------HHHcCCCCccchhhhhh-hHHHHHHHHHHHHhcCc--chhHHHHHhhHHHhHHHHhHHHHHHHHHhcc
Q 013656 342 E--------KVIGMHDTKSICLRALA-RLPVVIPIWFLAIIFPF--FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (438)
Q Consensus 342 ~--------~~~~~~~~~~~~~r~~~-r~~~v~~~~~la~~ip~--~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~ 407 (438)
. +.+++-+++....+.++ ..++.++..++....|. +..++++.+ .+..+.|++|++.+++.||+
T Consensus 332 a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 332 SMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 1 22221122233333322 22222222222222332 444444443 34578899999999998764
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=99.34 E-value=7.2e-09 Score=106.13 Aligned_cols=348 Identities=10% Similarity=0.040 Sum_probs=172.5
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHH-HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
++.+.++..+..++++||+|++..|.. .+.+|- ..++..++.|++.+....-+. |...+....+ .+
T Consensus 10 r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~a----El~~~~P~sG--------g~ 76 (461)
T PRK10746 10 RGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMG----EMLFLEPVTG--------SF 76 (461)
T ss_pred ccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCC--------CH
Confidence 457888888999999999999987654 455665 244445555555444333333 4443322212 46
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
.+-+++.+||.+++..-..................+..+.+..++.+...|..++..++..+... ..+...........
T Consensus 77 ~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN~~-gv~~~~~~e~~~~~ 155 (461)
T PRK10746 77 AVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLA-AVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 66788889998876654433332222233333333333333323333333333322222222221 22222222211111
Q ss_pred HHHHHHHHHHHHH---Hhhc-----CC---CCCC-CC--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chh
Q 013656 207 MTTYTAWYLTIAA---VVHG-----QV---EGAS-HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY 271 (438)
Q Consensus 207 ~~~~~~~~~~~~~---~~~~-----~~---~~~~-~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~ 271 (438)
..+.....+++.+ ...+ .. .+.+ +. .|..+.++..++....|+|.+-..+.....|+|||+| .+|
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 1111100111111 1111 10 1111 11 1334667788999999999999999999999999987 788
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhCccccc--cccc---cccCCCchHHHHHHHHHHHHHHHhHhhhhc-cHHHHHH---
Q 013656 272 IYLFATLYVFTLTIPSATAVYWSFGDQLLN--HSNA---FSLLPKNRWRDAAVILMLIHQFITFGFACT-PLYFVWE--- 342 (438)
Q Consensus 272 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~--~~ni---l~~l~~~~~~~~~~~~~~i~~~~s~pl~~~-p~~~~~~--- 342 (438)
++..++..+.++|...........+.+..+ +++. ..+...+....+.++..++..+.+.--... +.|....
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~ 315 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAK 315 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887777777778877544443333332211 1111 112222222344455555555544433322 2222211
Q ss_pred -----HHHcCCCCccchhhhhh-hHHHHHHHHHHHHhcCcchhHHHHHhhHHH--hHHHHhHHHHHHHHHhcccc
Q 013656 343 -----KVIGMHDTKSICLRALA-RLPVVIPIWFLAIIFPFFGPINSAVGALLV--SFTVYIIPSLAHMLTYRKAS 409 (438)
Q Consensus 343 -----~~~~~~~~~~~~~r~~~-r~~~v~~~~~la~~ip~~~~i~~lvGa~~~--~~l~~ilP~l~~~~~~~~~~ 409 (438)
+.+++.+++....+.+. ..+..++...+....|+-+.+++.+-++++ ..+.++++++.+++.+|+++
T Consensus 316 ~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~ 390 (461)
T PRK10746 316 NRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHK 390 (461)
T ss_pred CCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12221122233333321 111222223344455665665555544432 47888999999999887654
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.33 E-value=5.6e-09 Score=107.27 Aligned_cols=350 Identities=11% Similarity=0.051 Sum_probs=167.2
Q ss_pred cccCccHHHHHHHHHhhhhhhhhchhhH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 013656 46 LWHGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 124 (438)
Q Consensus 46 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~ 124 (438)
..+..+.++.....++++||+|++-.|. +.+++|. ..++..++.+++...... ++-|..... + .+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~----s~aEl~s~~-~---~~~---- 84 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMR----AMGELLLSN-L---EYK---- 84 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHH----HHHHHHHhc-C---CCC----
Confidence 3456788888899999999999999765 7788887 345455555554433332 223443211 1 111
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 204 (438)
.+.+.+++.+||...++.-..................+..+.+..++.+...+..++..++..+... ..+....+..+.
T Consensus 85 ~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~~-g~~~~~~i~~~~ 163 (469)
T PRK11049 85 SFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNLA-TVKMFGEMEFWF 163 (469)
T ss_pred cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Confidence 3557888899998777655444432221112222222222222222222222222222222222222 223333333222
Q ss_pred HHHHHHHHHHHHHHHHh--hc---CCC----CC----CC--CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-
Q 013656 205 LGMTTYTAWYLTIAAVV--HG---QVE----GA----SH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 268 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~~---~~~----~~----~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~- 268 (438)
....+.....+++.++. .+ .+. +. +. ..|..+..++.++....|+|.|-..+....+|+|||+|
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 243 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhH
Confidence 22211111111111111 11 010 01 11 11344556888999999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHhhHhHHHHhhCccccc-c-ccc---cccCCCchHHHHHHHHHHHHHHHhHhhh-hccHHHHHH
Q 013656 269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQLLN-H-SNA---FSLLPKNRWRDAAVILMLIHQFITFGFA-CTPLYFVWE 342 (438)
Q Consensus 269 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~-~-~ni---l~~l~~~~~~~~~~~~~~i~~~~s~pl~-~~p~~~~~~ 342 (438)
.+|++..+...+.++|.+........-+.+... + +.. ......+....+..++.++..+.+.-.. ..+.|....
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a 323 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFG 323 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788887666666777776555443322211110 0 111 1111112223344444444444433222 222332221
Q ss_pred --------HHHcCCCCccchhhhhhhHHHH-HHHHHHHHhcCcchhHHHHHhhHH--HhHHHHhHHHHHHHHHhcccc
Q 013656 343 --------KVIGMHDTKSICLRALARLPVV-IPIWFLAIIFPFFGPINSAVGALL--VSFTVYIIPSLAHMLTYRKAS 409 (438)
Q Consensus 343 --------~~~~~~~~~~~~~r~~~r~~~v-~~~~~la~~ip~~~~i~~lvGa~~--~~~l~~ilP~l~~~~~~~~~~ 409 (438)
+.+++.++++...+..+-...+ .+...+....|+.....+.+-+++ ...+.|+++++.+++.+++++
T Consensus 324 ~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p 401 (469)
T PRK11049 324 LAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRP 401 (469)
T ss_pred HHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1222112223333333222221 222333344565444444333322 245778889999988876643
No 25
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.30 E-value=1.9e-09 Score=109.69 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=123.2
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
++.+.++.+...++++||+|++.+|...++.|-. .++..++.++... ++..++.|...+....+ ...
T Consensus 5 ~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l----~~al~~aEL~s~~P~~G--------G~y 71 (435)
T PRK10435 5 KKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAM----SLAYVYARLATKNPQQG--------GPI 71 (435)
T ss_pred CcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH----HHHHHHHHHHhhCCCCC--------Chh
Confidence 4578889999999999999999999999988753 3333344333322 33344446554443222 233
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchh-hHHHHHHHHhHh--hccCCcchhhHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRT-WTYIFGACCATT--VFIPSFHNYRIWSFLG 204 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~-~~~i~~~~~~pl--~~~~~l~~l~~~s~~~ 204 (438)
+-+++ +||.+.+..-...............+...+.+....+..+... ..++...++..+ .-.+..+....+..+.
T Consensus 72 ~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~ 150 (435)
T PRK10435 72 AYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIG 150 (435)
T ss_pred HHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456 6887766543322211111111111111111111111111111 111111111111 1222223333333222
Q ss_pred HHHHHHHHHHHHHHHHhhcCC----CCCCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVHGQV----EGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~ 279 (438)
....+...+...+....+.++ ++.....+.+..++..++....|+|.|-..+....+|+|||+| .+|++..+...
T Consensus 151 ~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~i 230 (435)
T PRK10435 151 LVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGL 230 (435)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHH
Confidence 222111111111122211111 1222122344567888899999999999999999999999975 89999999999
Q ss_pred HHHHHHhhHhHHHHhhC
Q 013656 280 VFTLTIPSATAVYWSFG 296 (438)
Q Consensus 280 ~~~~y~~~g~~gy~~fG 296 (438)
+.++|++.........+
T Consensus 231 v~ilYil~~~~~~~~~p 247 (435)
T PRK10435 231 AGIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999987776554443
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.27 E-value=1.6e-08 Score=104.08 Aligned_cols=234 Identities=10% Similarity=-0.002 Sum_probs=123.2
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccc
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGML-SGILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENVSFKNHVIQ 125 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~-~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~-~~~~~~~~~~~ 125 (438)
+..+.+++....+++++|+|++.+|....+.|=. ..++..++.+++.... ..++.|..++... .+ .
T Consensus 7 ~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~----al~~aEl~s~~P~~sG--------G 74 (473)
T TIGR00905 7 KKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLAL----AFVFAILATKKPELDG--------G 74 (473)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHH----HHHHHHHHhhCCCCCC--------C
Confidence 4588899999999999999999999998765522 2233334434433322 3334455544322 22 2
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccc---cccchhhHHHHHHHH--hHhhccCCcchhhHH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND---RLDKRTWTYIFGACC--ATTVFIPSFHNYRIW 200 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~---~~~~~~~~~i~~~~~--~pl~~~~~l~~l~~~ 200 (438)
..+.+++.+||+..+..-.............+.....+.+.+..+ ..+.....+....+. .-..-.+..+....+
T Consensus 75 ~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 75 IYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred hhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 334667889998777644433222111112221111111111111 111111111111111 122223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hcCCC--CC-CCCCc---ccHHHHHHHHHhHHhhcccccchhhhhhcccCcccchhH
Q 013656 201 SFLGLGMTTYTAWYLTIAAVV--HGQVE--GA-SHTAP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI 272 (438)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 272 (438)
..+.....+...+.+++..+. ++... +. ....| ..+..+..++....|+|.|-.....+.+|+||+++.+|+
T Consensus 155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPra 234 (473)
T TIGR00905 155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHH
Confidence 433332222211122222221 11110 11 01111 234567778888999999999999999999995569999
Q ss_pred HHHHHHHHHHHHHhhHhHHHH
Q 013656 273 YLFATLYVFTLTIPSATAVYW 293 (438)
Q Consensus 273 ~~~s~~~~~~~y~~~g~~gy~ 293 (438)
+..+..++.++|++.......
T Consensus 235 i~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887665443
No 27
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.27 E-value=2.3e-08 Score=102.42 Aligned_cols=227 Identities=11% Similarity=0.036 Sum_probs=118.6
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
++.+.++..+..++.+||+|++..|....+.|=...++..++.+++... +..++.|...+....+ .+.
T Consensus 12 r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~----v~~s~aEl~s~~P~aG--------g~y 79 (456)
T PRK10238 12 RGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFL----IMRQLGEMVVEEPVAG--------SFS 79 (456)
T ss_pred ccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCC--------CHH
Confidence 5677888889999999999998888766554322333333444443322 2333345544433222 345
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 207 (438)
.-+++.+||...+..-..................++.+....++.+...+..++..+...+... ..+....+..+....
T Consensus 80 ~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~-gv~~~~~~~~~~~~i 158 (456)
T PRK10238 80 HFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLT-NVKVFGEMEFWFAII 158 (456)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 5567789998777654444433333333333333333333223333333333322222222222 223333333222222
Q ss_pred HHHHHHHHHHHHH---hh--cCCC-CC----CCC--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHH
Q 013656 208 TTYTAWYLTIAAV---VH--GQVE-GA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYL 274 (438)
Q Consensus 208 ~~~~~~~~~~~~~---~~--~~~~-~~----~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~ 274 (438)
.+...+.+++.++ .. +.++ .. ++. .|..+..+..+++...|+|.|-.......+|+|||+| .+|++.
T Consensus 159 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~ 238 (456)
T PRK10238 159 KVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATN 238 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHH
Confidence 1111111111111 11 1111 11 111 1334456667788899999999999999999999987 888887
Q ss_pred HHHHHHHHHHHhh
Q 013656 275 FATLYVFTLTIPS 287 (438)
Q Consensus 275 ~s~~~~~~~y~~~ 287 (438)
.++....++|...
T Consensus 239 ~~~~~i~~~y~~~ 251 (456)
T PRK10238 239 QVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666553
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.26 E-value=2e-08 Score=103.21 Aligned_cols=236 Identities=10% Similarity=0.000 Sum_probs=122.1
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSF-SQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
+..+.++.....++.+||+|++..|-.. +.+|-...++..++.+++...... ++.|..++....+ .+
T Consensus 14 r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~----~~aELas~~P~aG--------G~ 81 (471)
T PRK11387 14 RTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQ----CLGELSVAMPETG--------AF 81 (471)
T ss_pred hcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCC--------CH
Confidence 4578889999999999999999877665 666743334444444444443332 3335544432222 35
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
..-+++.+|+...+..-....+.............+..+.+..++.+...+.+++.+++..+.. ...+.....+.....
T Consensus 82 y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~in~-~gvk~~~~~~~~~~~ 160 (471)
T PRK11387 82 HVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNV-VSTRFFAEGEFWFSL 160 (471)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 5677778998877654333332221211111111111112222222222233222222222222 223333322222111
Q ss_pred HHHHHHHHHHHHHH--hh-------cCC-CCCCC---C--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-ch
Q 013656 207 MTTYTAWYLTIAAV--VH-------GQV-EGASH---T--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 270 (438)
Q Consensus 207 ~~~~~~~~~~~~~~--~~-------~~~-~~~~~---~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~ 270 (438)
..+...+.+++.++ .. +.. +..++ . .|....++..++....|+|.|-..+....+|+|||+| .+
T Consensus 161 ~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 240 (471)
T PRK11387 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIP 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHH
Confidence 11111111111111 00 110 11111 1 1223345677778889999999999999999999998 89
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHhhC
Q 013656 271 YIYLFATLYVFTLTIPSATAVYWSFG 296 (438)
Q Consensus 271 ~~~~~s~~~~~~~y~~~g~~gy~~fG 296 (438)
|++..++..+.++|+...+......+
T Consensus 241 rAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 241 VAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99988888888888887655443333
No 29
>PRK11021 putative transporter; Provisional
Probab=99.26 E-value=1.8e-08 Score=101.81 Aligned_cols=225 Identities=8% Similarity=0.001 Sum_probs=117.5
Q ss_pred cHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHH
Q 013656 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (438)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 130 (438)
+.+++....++++||+|++.+|-...+.+=...++..++.+++.... ..++.|..++...++ ....-+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~----al~~aEl~s~~P~aG--------G~y~y~ 69 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPI----AIVFARLGRHFPHAG--------GPAHFV 69 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH----HHHHHHHHHhCCCCC--------CHHHhH
Confidence 46788899999999999999998766653223444444444443333 333345544433322 244566
Q ss_pred HhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHHHH
Q 013656 131 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY 210 (438)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 210 (438)
++.+||+..+..-...................+......+..+...+.+ ...+...+..+ ++...+..+.+..+.++.
T Consensus 70 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-n~~Gv~~~~~~~~~~~~~ 147 (410)
T PRK11021 70 GMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLA-ELLTLALLWLL-NLRGASSSANLQTVIALL 147 (410)
T ss_pred HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 7789998776543333221111111111111111111111111111211 11111111111 222233333333322221
Q ss_pred HHHHHHHHHHhhcC--CCCCCC--CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHH
Q 013656 211 TAWYLTIAAVVHGQ--VEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTI 285 (438)
Q Consensus 211 ~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~ 285 (438)
....+ ......+. ..+... ..+.++.++..++....|+|.|........+|+|||+| .+|++..+...+.++|+
T Consensus 148 ~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYi 226 (410)
T PRK11021 148 IVALV-VAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYW 226 (410)
T ss_pred HHHHH-HHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHH
Confidence 11111 11111111 111111 12345677888999999999999999999999999976 89999999999999999
Q ss_pred hhHhH
Q 013656 286 PSATA 290 (438)
Q Consensus 286 ~~g~~ 290 (438)
+....
T Consensus 227 l~~~~ 231 (410)
T PRK11021 227 ACTVV 231 (410)
T ss_pred HHHHH
Confidence 97654
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.26 E-value=5.1e-08 Score=99.89 Aligned_cols=229 Identities=12% Similarity=0.077 Sum_probs=122.8
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHH-HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
+..+.++.+...+++++|+|++.+|.. .+.+|-. .++..++.+++...... ++.|..++...++ ..
T Consensus 9 r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~----~~aEl~s~~P~~G--------g~ 75 (457)
T PRK10580 9 RGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMR----ALGEMSVHNPAAS--------SF 75 (457)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHH----HHHHHHHHcCCCC--------CH
Confidence 457888999999999999999999876 4555653 45555555555444433 3335544332222 34
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
...+++.+||...++.-....+.............+.......++.+...|.+.+.++...+ -.+..+.......+...
T Consensus 76 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 76 SRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAV-NLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-HHccchhHHHHHHHHHH
Confidence 45677889998777654444332222222222222222222223333333433222222222 22233333333322211
Q ss_pred HHHHHHHHHHHHH-------Hhhc-CCCCC----CC--CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chh
Q 013656 207 MTTYTAWYLTIAA-------VVHG-QVEGA----SH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY 271 (438)
Q Consensus 207 ~~~~~~~~~~~~~-------~~~~-~~~~~----~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~ 271 (438)
..+...+.+++.+ ..++ .+.+. +. ..|..+.++..++....|+|.|-.......+|+|||+| .+|
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr 234 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH
Confidence 1111111111111 1111 11111 11 11334556778888999999999999999999999998 788
Q ss_pred HHHHHHHHHHHHHHhhHhH
Q 013656 272 IYLFATLYVFTLTIPSATA 290 (438)
Q Consensus 272 ~~~~s~~~~~~~y~~~g~~ 290 (438)
++..+...+.++|......
T Consensus 235 Ai~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 235 AINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777677777766443
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.24 E-value=9.5e-09 Score=107.44 Aligned_cols=344 Identities=13% Similarity=0.102 Sum_probs=169.6
Q ss_pred ccCccHHHHHHHHHhhhhhhhhchhhHHH--HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 013656 47 WHGGSAWDAWFSCASNQVAQVLLTLPYSF--SQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 124 (438)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af--~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~ 124 (438)
.+..+.++.+..-+++++|+|+..+|-.. +.+|-. .++..++.|+.+... ..++.|..++....|-.|
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~----al~yaElas~~P~sGg~Y----- 96 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLS----GFCYAEFGARVPKAGSAY----- 96 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHH----HHHHHHHHHhCCCCCcce-----
Confidence 35688999999999999999999999654 347754 344444444443333 444456665544333222
Q ss_pred cHHHHHHhhcCCccchhhhhhhHH-HHHHHHH------HHHHH-hhcccc-------ccc-ccccchh-hHHHHHHHHhH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCT-FLLFGSV------IQLIA-CASNIY-------YIN-DRLDKRT-WTYIFGACCAT 187 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~------~~li~-~~~~~~-------~~~-~~~~~~~-~~~i~~~~~~p 187 (438)
.| +++.+|+...++.-..... +..+... .|+.. ...... ... +..+... +..+..++++-
T Consensus 97 ~y---~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~ 173 (557)
T TIGR00906 97 LY---SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA 173 (557)
T ss_pred ee---HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH
Confidence 23 3445788776654333322 1111111 12111 000000 000 1111111 11111111122
Q ss_pred hhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--------CCCcccHHHHHHHHHhHHhhcccccchhhh
Q 013656 188 TVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS--------HTAPTKLVLYFTGATNILYTFGGHAVTVEI 259 (438)
Q Consensus 188 l~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 259 (438)
.......+..+++..+.....+.....+++.+..+....+.. ...|..+.+++.++....|+|.|-..+...
T Consensus 174 ~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 174 VLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 223344555555544333322222222233333333333322 112345567888899999999999999999
Q ss_pred hhcccCccc-chhHHHHHHHHHHHHHHhhHhHHHHhhCccccc-cc---cccccCCCchHHHHHHHHHHHHHHHhHhhhh
Q 013656 260 MHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQLLN-HS---NAFSLLPKNRWRDAAVILMLIHQFITFGFAC 334 (438)
Q Consensus 260 ~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~-~~---nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~ 334 (438)
.+|+|||+| .++++..++.++.++|.+....-...-+.+..+ ++ ......+.+....+..+...+.++.+.....
T Consensus 254 aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~ 333 (557)
T TIGR00906 254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGM 333 (557)
T ss_pred HHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 899999999999999998765544333322111 11 1222222222233344444444443333222
Q ss_pred ccHHHHHH---------HHHc-CCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHH
Q 013656 335 TPLYFVWE---------KVIG-MHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT 404 (438)
Q Consensus 335 ~p~~~~~~---------~~~~-~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~ 404 (438)
......+. +.+. .|++.+...+..+-. .+++.+++... +++.+.++.. .+..+.|.+++...+..
T Consensus 334 ~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~--~iv~~il~~~~-~~~~l~~l~s--ig~ll~y~lv~~~~l~l 408 (557)
T TIGR00906 334 FPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVS--GAIAALMAFLF-DLKALVDLLS--IGTLLAYSLVAACVLIL 408 (557)
T ss_pred HHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHH--HHHHHHHHHHc-CHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 22211111 2222 232322333332211 22223333333 4555555542 23468899998888888
Q ss_pred hccc
Q 013656 405 YRKA 408 (438)
Q Consensus 405 ~~~~ 408 (438)
|+++
T Consensus 409 R~~~ 412 (557)
T TIGR00906 409 RYQP 412 (557)
T ss_pred hccc
Confidence 7544
No 32
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.24 E-value=2.1e-08 Score=103.09 Aligned_cols=347 Identities=9% Similarity=0.027 Sum_probs=166.8
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccc
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQ-MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENVSFKNHVIQ 125 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~-~~~~~~~~~~~ 125 (438)
|+.+.++.+...++++||+|++.+|....+ +|....++..++.++..... ..++.|..++... .+ .
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~----al~~aeL~s~~P~~gG--------G 68 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLAL----AFSFQNLANKKPELDG--------G 68 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHH----HHHHHHHHhhCCCCCC--------C
Confidence 356788999999999999999999987654 45332333344444444333 3333455444321 11 1
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccc--cchhhHHH-HHHHH--hHhhccCCcchhhHH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRL--DKRTWTYI-FGACC--ATTVFIPSFHNYRIW 200 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~--~~~~~~~i-~~~~~--~pl~~~~~l~~l~~~ 200 (438)
..+-+++.+||..++..-....+........+.....+.+.+..+.. +...+..+ ...++ +-..-.+..+..+.+
T Consensus 69 ~y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 69 VYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred hhhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 33347788999877664433332222222222222111111111111 11122111 11111 111122334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hcCC--CC-CCCC-----CcccHHHHHHHHHhHHhhcccccchhhhhhcccCcccch
Q 013656 201 SFLGLGMTTYTAWYLTIAAVV--HGQV--EG-ASHT-----APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK 270 (438)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~~~--~~~~--~~-~~~~-----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 270 (438)
..+.....+...+.+++.++. ++.. ++ .... ....+..+..++....|+|.|-.....+.+|.|++++.+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip 228 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccch
Confidence 333222211111111121111 1111 00 0000 111233455778889999999999999999999988899
Q ss_pred hHHHHHHHHHHHHHHhhHhHHHHhhCccccc---cc---cccccCCCchHHHHHHHHHHHHHHHhHhhhh-ccHHHH---
Q 013656 271 YIYLFATLYVFTLTIPSATAVYWSFGDQLLN---HS---NAFSLLPKNRWRDAAVILMLIHQFITFGFAC-TPLYFV--- 340 (438)
Q Consensus 271 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~---~~---nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~-~p~~~~--- 340 (438)
|+...++..+.++|.......+...+.+..+ ++ .+.+..-.+....+..+..+++.+.+.--.. .+.|..
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877665444422110 11 1111222222234455555555555544432 232322
Q ss_pred -----HHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHhHHHHhHHHHHHHHHhccc
Q 013656 341 -----WEKVIGMHDTKSICLRALARLPVVIPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (438)
Q Consensus 341 -----~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~i--p~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~ 408 (438)
+.+.+.+.++++...+.+.-...+...+.+.... +.++.+.++.+. ...+.|+++++.+++.++++
T Consensus 309 ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 309 AKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 2233332223333444332222221111111112 234555554433 34688999999999887654
No 33
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.20 E-value=6.4e-08 Score=98.81 Aligned_cols=333 Identities=11% Similarity=0.073 Sum_probs=162.6
Q ss_pred HHhhhhhhhhchhhH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCCc
Q 013656 59 CASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPY 137 (438)
Q Consensus 59 l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 137 (438)
.++++||+|++-.|- +.+++|-. .++..++.|++..... .++.|...+....+ ...+-+++.+||.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~a----l~~aEL~s~~P~~G--------g~y~y~~~~~G~~ 69 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIM----RMLAEMAVATPDTG--------SFSTYADKAIGRW 69 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHH----HHHHHHHHhCCCCC--------CHHHHHHHHcChH
Confidence 357899999999998 77788853 5555555555554443 33335544432222 3556777889998
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHHHHHHHHHHH
Q 013656 138 WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTI 217 (438)
Q Consensus 138 ~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~ 217 (438)
..++.-..................+..+.+..++.+...+..++..+...+.. ...+....+..+.....+...+.+++
T Consensus 70 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~-~gv~~~~~i~~~~~~~ki~~li~~ii 148 (446)
T PRK10197 70 AGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNL-LSVKNYGEFEFWLALCKVIAILAFIF 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 87765444333222222111111111111111222222222222222222222 22233333322222211111111111
Q ss_pred HHH--hhcCCC-----CC----CC--CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHH
Q 013656 218 AAV--VHGQVE-----GA----SH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTL 283 (438)
Q Consensus 218 ~~~--~~~~~~-----~~----~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~ 283 (438)
..+ ..|..+ +. +. ..|..+.++..++....|+|.|-..+.....|+|||+| .+|++..++..+.++
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~ 228 (446)
T PRK10197 149 LGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIF 228 (446)
T ss_pred HHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 111 122111 11 10 11345567889999999999999999999999999998 789988888888888
Q ss_pred HHhhHhHHHHhhCcccccc---c---cccccCCCchHHHHHHHHHHHHHHHhHhhhhc-cHHHHHH--------HHHcCC
Q 013656 284 TIPSATAVYWSFGDQLLNH---S---NAFSLLPKNRWRDAAVILMLIHQFITFGFACT-PLYFVWE--------KVIGMH 348 (438)
Q Consensus 284 y~~~g~~gy~~fG~~~~~~---~---nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~~-p~~~~~~--------~~~~~~ 348 (438)
|+...+......+.+..+. + .+.+....+....+.++..++..+.+.--... +.|.... +.+.+.
T Consensus 229 Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~ 308 (446)
T PRK10197 229 YLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKI 308 (446)
T ss_pred HHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhh
Confidence 8886555333322221100 1 12233333333344555555555554444332 2222211 222211
Q ss_pred CCccchhhhhhhH-HHHHHHHHHHHhcC--cchhHHHHHhhHHHhHHHHhHHHHHHHHHhcc
Q 013656 349 DTKSICLRALARL-PVVIPIWFLAIIFP--FFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (438)
Q Consensus 349 ~~~~~~~r~~~r~-~~v~~~~~la~~ip--~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~ 407 (438)
+++....+.++-. .+.++..+.....| .++.++++.+... .+.|+++++.+++.+|+
T Consensus 309 ~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 309 NRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred CcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 2222333332222 22222222222223 3566666665554 48889999999998875
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.20 E-value=9.3e-08 Score=98.80 Aligned_cols=235 Identities=9% Similarity=-0.011 Sum_probs=117.4
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
+..+.++.....++++||+|++..|. +.+++|-...++..++.|++..... .++.|...+....+ ..
T Consensus 15 r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~a----l~~aEL~s~~P~sG--------g~ 82 (489)
T PRK10836 15 RELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLM----TSLGELAAYMPVSG--------SF 82 (489)
T ss_pred ccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCC--------CH
Confidence 45778889999999999999999996 6667776434555555555554443 33345554443322 23
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
..-+++.+|+..++..-.....................+.+..++.+...+..++.+++..+.. ...+..+....+...
T Consensus 83 y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~-~gv~~~~~~~~~~~~ 161 (489)
T PRK10836 83 ATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNY-ISVRGFGEAEYWFSL 161 (489)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHH
Confidence 4455566777665543222222111111111111111112221222222222222222221111 122222222211111
Q ss_pred HHH----HHHHH--HHHHHHhhcCC----CCCCC---CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhH
Q 013656 207 MTT----YTAWY--LTIAAVVHGQV----EGASH---TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (438)
Q Consensus 207 ~~~----~~~~~--~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~ 272 (438)
.-+ ....+ +...+..++.. .+.+. +.+..+..++.+.....|+|.|-..+....+|+|||+| .+|+
T Consensus 162 ~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrA 241 (489)
T PRK10836 162 IKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRA 241 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHH
Confidence 111 00000 01111111111 01110 01123444555566677999999999999999999987 7999
Q ss_pred HHHHHHHHHHHHHhhHhHHHHhh
Q 013656 273 YLFATLYVFTLTIPSATAVYWSF 295 (438)
Q Consensus 273 ~~~s~~~~~~~y~~~g~~gy~~f 295 (438)
+..++..+.++|+..........
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHheec
Confidence 98999999999998765544433
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.19 E-value=3e-08 Score=100.61 Aligned_cols=343 Identities=15% Similarity=0.100 Sum_probs=174.8
Q ss_pred cHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHH
Q 013656 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (438)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 130 (438)
|.++++...+++++|+|+...| ...+.|.. .++..++.+.+.... ..-++.|+.++..+++ ....-+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~---~a~~~~el~~~~p~~G--------G~y~~~ 68 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLP---IALSYAELSSAYPSAG--------GIYVWV 68 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHH---HHHHHHHHHTTTTSST--------THHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHH---HHHHHHHHhccCCCcC--------eeeehh
Confidence 6788999999999999999999 77777875 444444433333111 1233346654443323 355677
Q ss_pred HhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccc-ccccccchh--hHHH--HHHHHhHhhccCCcchhhHHHHHHH
Q 013656 131 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKRT--WTYI--FGACCATTVFIPSFHNYRIWSFLGL 205 (438)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~~--~~~i--~~~~~~pl~~~~~l~~l~~~s~~~~ 205 (438)
++.+||+.++..-....+........+.....+.+.. .+.+..... ..++ ...+..-..-.+..+..+++.....
T Consensus 69 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 148 (426)
T PF13520_consen 69 SRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILT 148 (426)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhh
Confidence 7889998887655444443333333333333332222 222222211 1111 1112222222333444444443333
Q ss_pred HHHH-HHHHHHHHHHHhhcCCCC-------CCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCcccchhHHHHHH
Q 013656 206 GMTT-YTAWYLTIAAVVHGQVEG-------ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFAT 277 (438)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~ 277 (438)
...+ .....+++.++.....+. .+...|..+..++.+++...|+|.|-...+.+.+|+|| |+.+|++..++
T Consensus 149 ~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~ 227 (426)
T PF13520_consen 149 VIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISI 227 (426)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHH
T ss_pred hhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccch
Confidence 3322 222223333333221111 11122334445788899999999999999999999998 78999999999
Q ss_pred HHHHHHHHhhHhHHHHhhCccccc-ccccc-------ccCCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHc---
Q 013656 278 LYVFTLTIPSATAVYWSFGDQLLN-HSNAF-------SLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIG--- 346 (438)
Q Consensus 278 ~~~~~~y~~~g~~gy~~fG~~~~~-~~nil-------~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~--- 346 (438)
..+.++|.+.........+++..+ +++.. +....+....+..+...+..+.+...........+...-.
T Consensus 228 ~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 307 (426)
T PF13520_consen 228 IIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGV 307 (426)
T ss_dssp HHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccc
Confidence 999999999877766666554321 11211 1111233344555555555555555543322222222211
Q ss_pred ------CCCCccchhhhhhhHHHHHHHHHHHH---hcC--cchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccc
Q 013656 347 ------MHDTKSICLRALARLPVVIPIWFLAI---IFP--FFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASAR 411 (438)
Q Consensus 347 ------~~~~~~~~~r~~~r~~~v~~~~~la~---~ip--~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~ 411 (438)
+.+|++...+... ...+.+.++.. ..| ++..+.+.. .....+.++++.+.+++.+++++..
T Consensus 308 lP~~~~~~~k~~~P~~a~~--~~~~i~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 308 LPKWFAKVNKFGTPYNAII--LVAVISSILLLLFLFIPQSSFDILVSLS--SVGYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp SSGGGGTTSSSSSCHHHHH--HHHHHHHHHHHHTTTSSSSHHHHHHHHH--HHHTHHHHHHHHHHHHHTHHHSCSS
T ss_pred hhhhhhhccccCCceeeeh--hhhHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 1112222222222 11122222222 223 234444432 2234677788888887777665543
No 36
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.19 E-value=1.2e-07 Score=97.67 Aligned_cols=231 Identities=11% Similarity=0.039 Sum_probs=124.5
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhh-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
++.+.++.....++.++|+|++..| .+.+++|-...++..++.+++..... .++.|..++....+ . .|
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a----~~~aEl~s~~P~~g----G---~~ 70 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVM----QSLGEMATFYPVVS----G---SF 70 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCCCC----C---CH
Confidence 4567788889999999999999766 55566664322444444444443333 23345544332111 1 47
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
...+++.+|+.+.+..-....+.............+..+.+..++.+...|..+..++... .-....+.......+...
T Consensus 71 ~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 71 ATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVI-INLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Confidence 7788889999888765444433222222222223333333333333333444322222222 222233333333332221
Q ss_pred HHHHHHHHHHHHHH--hhcCCCCC-----C----C--CCcc----cHHHHHHHHHhHHhhcccccchhhhhhcccCccc-
Q 013656 207 MTTYTAWYLTIAAV--VHGQVEGA-----S----H--TAPT----KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 268 (438)
Q Consensus 207 ~~~~~~~~~~~~~~--~~~~~~~~-----~----~--~~~~----~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~- 268 (438)
..+...+.+++.++ ..+..++. + . ..+. .+.++..++....|+|.|-.....+.+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 11111111111111 11111100 0 0 0111 2456778888899999999999999999999987
Q ss_pred chhHHHHHHHHHHHHHHhhHhH
Q 013656 269 FKYIYLFATLYVFTLTIPSATA 290 (438)
Q Consensus 269 ~~~~~~~s~~~~~~~y~~~g~~ 290 (438)
.+|++..++..+.++|.+....
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999986543
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.15 E-value=1.5e-07 Score=96.03 Aligned_cols=226 Identities=12% Similarity=0.007 Sum_probs=117.7
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
++.+.++.+...++.++|....+.+.+.++.|+..-++..++.+++.... ..++.|..++....+ ...
T Consensus 7 r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~----a~~~aEl~s~~P~~G--------g~y 74 (442)
T TIGR00908 7 KTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTF----CFSLAELSTMIPTAG--------GGY 74 (442)
T ss_pred ccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CHH
Confidence 45788888888888899865566788899999863333334433332222 223345554443322 244
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 207 (438)
.-+++.+||..++..-....+........+....++.+....+..+...+.+++..+...+ |....+..+.+..+.
T Consensus 75 ~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l----n~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 75 GFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGI----NILGVGEAAKLEFVV 150 (442)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH----HHHHHHHHHhHHHHH
Confidence 5667789998777654443332222222333333332222222222222222222222211 112223332222222
Q ss_pred HHHH--HHHHHH-HHHhhcCCCC--------CCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHH
Q 013656 208 TTYT--AWYLTI-AAVVHGQVEG--------ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLF 275 (438)
Q Consensus 208 ~~~~--~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~ 275 (438)
+... .+.+++ ....+....+ .+...+..+..++.++....|+|.|........+|+|||+| .+|++..
T Consensus 151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~ 230 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIG 230 (442)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHH
Confidence 2111 111111 1111100000 01112333456778888889999999999999999999976 8999988
Q ss_pred HHHHHHHHHHhhHh
Q 013656 276 ATLYVFTLTIPSAT 289 (438)
Q Consensus 276 s~~~~~~~y~~~g~ 289 (438)
++.++.++|+..-.
T Consensus 231 s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 231 AILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777776533
No 38
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.13 E-value=2.3e-08 Score=97.61 Aligned_cols=281 Identities=14% Similarity=0.145 Sum_probs=161.5
Q ss_pred ccHHHHHHHHHhhhhhhhhchhhHHHHhhc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMG---MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~G---~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
.|..|.+..+..+++|+|++.+|...++.+ |.. .++.+........+..+.. + +.. + + +.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~----~ll~~~~~l~~~~l~~~l~---~-~~p--~----~---~l 64 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS----VLLGGLIGLLLALLIYYLL---K-RFP--G----K---TL 64 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH----HHHHHHHHHHHHHHHHHHH---H-HCC--C----C---CH
Confidence 578899999999999999999999987764 653 3333333333333323221 1 111 1 1 68
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccc-ccccccchhhHH-HHHHHHhHhhccCCcchhhHHHHHH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKRTWTY-IFGACCATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~ 204 (438)
.|..++.+||+.++........+.+......+-..++.+.. ..+ +...|.+ ...++..-....+.++.+.+.+.+-
T Consensus 65 ~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 65 VEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP--ETPIWVIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999999888766555555544444333333322211 111 2222322 2333334445556677777655443
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCcccchhHHHHHHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLT 284 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y 284 (438)
........+.+...+..+.+..+.....+.++.+++.+.-...+.|.+-....-+...+|+|++.+|....+.....++|
T Consensus 143 ~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~ 222 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFL 222 (320)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 33333222223333333322222222234566778888778888888888888899999999999999989998888888
Q ss_pred HhhHhHHHHhhCcccccc--cccc---ccCCCc-hHHH---HHHHHHHHHHHHhHhhhhccHHHHHHHHHcCCC
Q 013656 285 IPSATAVYWSFGDQLLNH--SNAF---SLLPKN-RWRD---AAVILMLIHQFITFGFACTPLYFVWEKVIGMHD 349 (438)
Q Consensus 285 ~~~g~~gy~~fG~~~~~~--~nil---~~l~~~-~~~~---~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 349 (438)
...-+.....||.+..++ -+.. +..+-+ -... ..-..-....+....+..+.....+.+.++.++
T Consensus 223 ~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 223 LFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 887777788888643111 0111 111111 1111 233334444555555666677777777776443
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.10 E-value=1.6e-07 Score=97.43 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=120.8
Q ss_pred cccCccHHHHHHHHHhhhhhhhhchhhHH-HHhhchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 013656 46 LWHGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGI--LLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH 122 (438)
Q Consensus 46 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gi--i~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~ 122 (438)
..+..+.++++...+++++|+|++..|.. .+++|-. |. +..++.+++..... .++.|..++....+
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~a----l~~aELas~~P~sG------ 108 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGA----LVYAELGTTIPKSG------ 108 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHH----HHHHHHHhhcCCCC------
Confidence 34568889999999999999999999875 5556743 33 22333333332222 22335544332222
Q ss_pred cccHHHHHHhhcCCccchhhhhhhHHHH-HHHHHHHHHHhhccc-cccccc--ccchhhHHHHHHHHhHhh--ccCCcch
Q 013656 123 VIQWFEVLDGLLGPYWKAVGLAFNCTFL-LFGSVIQLIACASNI-YYINDR--LDKRTWTYIFGACCATTV--FIPSFHN 196 (438)
Q Consensus 123 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~-~g~~~~~li~~~~~~-~~~~~~--~~~~~~~~i~~~~~~pl~--~~~~l~~ 196 (438)
....-.++.+||...++......... .+.........++.+ .....+ .+.....++..+++.... -....+.
T Consensus 109 --G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~ 186 (501)
T TIGR00911 109 --GEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKW 186 (501)
T ss_pred --chhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 13334556789887765433322211 111111111112111 101111 111111121111122222 2223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCC----CC-CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc
Q 013656 197 YRIWSFLGLGMTTYTAWYLTIAAVV---HGQVEGAS----HT-APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 268 (438)
Q Consensus 197 l~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 268 (438)
..++..+.....+...+.+++.++. .+..++.+ .. ...+..++..++....|+|.|-..+..+.+|+|||+|
T Consensus 187 ~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r 266 (501)
T TIGR00911 187 ATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence 3333333222222211122222221 22111111 11 1123456777889999999999999999999999976
Q ss_pred -chhHHHHHHHHHHHHHHhhHhHHHHhhC
Q 013656 269 -FKYIYLFATLYVFTLTIPSATAVYWSFG 296 (438)
Q Consensus 269 -~~~~~~~s~~~~~~~y~~~g~~gy~~fG 296 (438)
.+|++..++..+.++|++.........+
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999998655443333
No 40
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.07 E-value=2e-08 Score=100.04 Aligned_cols=349 Identities=11% Similarity=0.070 Sum_probs=187.4
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G--~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (438)
|+.+.+++...+++.+||+|+...|....+.+ ...+++.-++.|+++.... -+|.|.-+.-.+.|- +
T Consensus 12 kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~ga----lcyaELGT~ipksGg-------d 80 (479)
T KOG1287|consen 12 KKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGA----LCYAELGTSIPKSGG-------D 80 (479)
T ss_pred ceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHH----HHHHHHhccccCCCc-------c
Confidence 34666777788999999999999999887766 3333333344444444442 233354332222222 2
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHH-HHHHHHhhcc-ccccc-ccccchhhHHHHHHHHhHhhccCCcchhhHHHH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGS-VIQLIACASN-IYYIN-DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 202 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~-~~~li~~~~~-~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 202 (438)
|.=+ .++||+.........-.......+ .++-+.+++- +.... .....+.+.-.++..++-+....|..+.++.+.
T Consensus 81 ~ayi-~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~ 159 (479)
T KOG1287|consen 81 YAYI-SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATR 159 (479)
T ss_pred hhhH-HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3323 345888766544333333333332 3333344432 22111 122233333333333333333335566777766
Q ss_pred HHHHHHHH---HHHHHHHHHHh---hcCCCCCCCC----CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chh
Q 013656 203 LGLGMTTY---TAWYLTIAAVV---HGQVEGASHT----APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY 271 (438)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~ 271 (438)
+..+.+.. ....+++.+++ .|...+.+.. ...+..+.-.++-.-.|||.+=..+=.+.+|+|||+| .++
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~ 239 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchH
Confidence 65554432 22233444443 2333332211 1123344556777778999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhCcc-cccccccc-ccCCC---chHHHHHHHHHHHHHHHhHhhhhccH-HHHHHHH-
Q 013656 272 IYLFATLYVFTLTIPSATAVYWSFGDQ-LLNHSNAF-SLLPK---NRWRDAAVILMLIHQFITFGFACTPL-YFVWEKV- 344 (438)
Q Consensus 272 ~~~~s~~~~~~~y~~~g~~gy~~fG~~-~~~~~nil-~~l~~---~~~~~~~~~~~~i~~~~s~pl~~~p~-~~~~~~~- 344 (438)
++..|+.+++++|++.=+..+.+-..+ .. +++.. ..+.+ +.+....-++..++.+.+.--.+... |....-.
T Consensus 240 Ai~isi~lvt~iYil~NvAy~~vls~~e~l-~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar 318 (479)
T KOG1287|consen 240 AILISIPLVTVIYVLVNVAYFTVLSPDEIL-SSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAR 318 (479)
T ss_pred HHHHhhHHHHHHHHHhHhheeEecCHHHhc-ccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999765544332211 12 22221 11111 33334444555555555444333222 2222111
Q ss_pred -------Hc-CCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhccccccc
Q 013656 345 -------IG-MHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQ 412 (438)
Q Consensus 345 -------~~-~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~ 412 (438)
+. +|.++ ...+. .+.+.....++....+|+..+++.++=.-.....+.+=++++++.++++..|.
T Consensus 319 eG~LP~~~s~i~~~~-~TP~~--allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 319 EGHLPAFFSMISVRR-FTPRP--ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred ccCccHHHHhhcCCC-CCChH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 11 11111 11111 23334445555556678999999998888877888888888888877775544
No 41
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.06 E-value=2.3e-09 Score=93.32 Aligned_cols=212 Identities=17% Similarity=0.140 Sum_probs=129.4
Q ss_pred HHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---hhhhc----------
Q 013656 55 AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLY------VEYRS---RKEKE---------- 115 (438)
Q Consensus 55 a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~------~~~~~---~~~~~---------- 115 (438)
+...+.|.++|+|.|+||.+|+.+||.+++.++.+.+++++.+...+.+++ +++++ .+|.+
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 456789999999999999999999999999999999999999876644432 22322 11100
Q ss_pred ------c---------cc-----------cccccccHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHH---------
Q 013656 116 ------N---------VS-----------FKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIA--------- 160 (438)
Q Consensus 116 ------~---------~~-----------~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~--------- 160 (438)
+ .+ ..+ .++.+|++...|.|.+..+..+++++|++|...+|-..
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisd-kvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISD-KVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeeh-hhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhh
Confidence 0 00 011 13677888889999999899999999999999887431
Q ss_pred hh----cccccc----ccc----cc--------chhhHHHHHHHH-hHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 013656 161 CA----SNIYYI----NDR----LD--------KRTWTYIFGACC-ATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAA 219 (438)
Q Consensus 161 ~~----~~~~~~----~~~----~~--------~~~~~~i~~~~~-~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~ 219 (438)
|+ +.+... ..+ +. .|.+..|+.+++ +|+.+. .+++-+.+.++...+-.......+..+
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l~ 254 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISLA 254 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhhh
Confidence 21 111100 011 11 244566666555 577766 466667766554443221111111111
Q ss_pred HhhcCCCC-CCCCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc
Q 013656 220 VVHGQVEG-ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 268 (438)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 268 (438)
-.+...+. ..|+....+-++=..++..+|+|.+|...|+....++.+..
T Consensus 255 tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~g 304 (319)
T KOG3832|consen 255 TMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKDG 304 (319)
T ss_pred hhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeeccc
Confidence 11111111 12322233333435578889999999999999998876543
No 42
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.04 E-value=1.2e-07 Score=104.26 Aligned_cols=226 Identities=13% Similarity=0.060 Sum_probs=120.4
Q ss_pred CccHHHHHHHH-Hhhhhhhhhc-hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccccccccc
Q 013656 49 GGSAWDAWFSC-ASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSR-KEKENVSFKNHVIQ 125 (438)
Q Consensus 49 ~~s~~~a~~~l-~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~-~~~~~~~~~~~~~~ 125 (438)
+.+.+++++.- +.+++|+|+. .+++...++|...+++..++.++++..+..-+. +..++ ..+.|- .
T Consensus 77 ~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~s----eiaTng~p~aGG-------~ 145 (953)
T TIGR00930 77 KFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMS----AIATNGVVKGGG-------A 145 (953)
T ss_pred ccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCccH-------H
Confidence 34444444444 8999999985 566778899988778888887777777753333 44333 111121 1
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc---------ccc-cchhhHHHHHHHHhHhhccCCcc
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN---------DRL-DKRTWTYIFGACCATTVFIPSFH 195 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~---------~~~-~~~~~~~i~~~~~~pl~~~~~l~ 195 (438)
| ...++.+|+..+..+-+........++..|.+..++.+..+. +.. +.+.+..+..+++..+.+.
T Consensus 146 Y-~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~---- 220 (953)
T TIGR00930 146 Y-YLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFA---- 220 (953)
T ss_pred H-HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHh----
Confidence 2 355667898765443322222222333344433333221110 011 1222322222233333333
Q ss_pred hhhHHHHHHHHHHHH---HHHHHHHHHHhhcC-CCC-----C-----CC----CCcccHHHHHHHHHhHHhhcccccchh
Q 013656 196 NYRIWSFLGLGMTTY---TAWYLTIAAVVHGQ-VEG-----A-----SH----TAPTKLVLYFTGATNILYTFGGHAVTV 257 (438)
Q Consensus 196 ~l~~~s~~~~~~~~~---~~~~~~~~~~~~~~-~~~-----~-----~~----~~~~~~~~~~~~~~~~~faf~~~~~~~ 257 (438)
..++.+-+..+.++. ..+.+++.++.... .+. . +. ..+.....++..++++.+||.|.....
T Consensus 221 Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~aga 300 (953)
T TIGR00930 221 GMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGA 300 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 244444444333221 11112222111100 000 0 00 001111236777888888999999999
Q ss_pred hhhhcccCccc-chhHHHHHHHHHHHHHHhhHhH
Q 013656 258 EIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATA 290 (438)
Q Consensus 258 ~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~ 290 (438)
.+-.|+|+|+| .++....++.++.++|++..++
T Consensus 301 n~sgElKnP~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 301 NISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 8999999999999999998653
No 43
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.97 E-value=1.2e-06 Score=89.44 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=117.8
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHH-HhhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSF-SQMGML-SGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~~-~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (438)
+..+.++++...++.++|+|++..|... +++|-. ..++..++.+++.... ..++.|..++...++-.+ .
T Consensus 8 r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~----al~~aEl~s~~P~~GG~y-----~ 78 (445)
T PRK11357 8 RKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQ----MCVYAELSTAYPENGADY-----V 78 (445)
T ss_pred ccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCCCCCce-----e
Confidence 4578889999999999999999999874 456633 2333444444443333 333345554433323111 2
Q ss_pred HHHHHHhhcCCccchhhhhhhHH-HHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhh--ccCCcchhhHHHH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTV--FIPSFHNYRIWSF 202 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~--~~~~l~~l~~~s~ 202 (438)
| .++.+||...+..-..... ........+....++.+.+. .+.+...+..+...++..+. -.+..+....+..
T Consensus 79 y---~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 79 Y---LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL-TPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred e---HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3 4466888766654333221 11111112222222221111 11111111121111211122 2233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHh--hcCC--CCCCC--CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHH
Q 013656 203 LGLGMTTYTAWYLTIAAVV--HGQV--EGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLF 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~ 275 (438)
+.....+...+.+++.++. ++.. ++... ....++..+..++....|+|.+-.......+|+|||+| .+|++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 2222222211112222221 2111 01010 01112456777888999999999999999999999987 7999999
Q ss_pred HHHHHHHHHHhhHhHH
Q 013656 276 ATLYVFTLTIPSATAV 291 (438)
Q Consensus 276 s~~~~~~~y~~~g~~g 291 (438)
++.++.++|++.....
T Consensus 235 ~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 235 SCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998866543
No 44
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.87 E-value=1.2e-06 Score=88.07 Aligned_cols=345 Identities=13% Similarity=0.036 Sum_probs=189.2
Q ss_pred cCccHHHHHHHHHhhhhhhhh-chhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
+......-.+..+...||+|+ ++.-.+.+++|-...++..+++|.+.+..++-+.++...+. . .. ++
T Consensus 44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P----~-----sG---sF 111 (541)
T COG0833 44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP----V-----SG---SF 111 (541)
T ss_pred hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C-----CC---ch
Confidence 344555566789999999997 47899999999998888889988888777776665432221 1 11 46
Q ss_pred HHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc-ccccchhhHHHHHHHHhHhh--ccCCcchhhHH-HH
Q 013656 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-DRLDKRTWTYIFGACCATTV--FIPSFHNYRIW-SF 202 (438)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~-~~~~~~~~~~i~~~~~~pl~--~~~~l~~l~~~-s~ 202 (438)
..-+.+..++.++...-..-...-..+.-.+++.++..+++.+ +..+...|..++.++++.+- -.|...+..++ |.
T Consensus 112 ~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 112 STYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 6677777777766654333332223333466777776667765 34588889988887776654 44555555544 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC--------CCCC--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chh
Q 013656 203 LGLGMTTYTAWYLTIAAVVHGQVEG--------ASHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY 271 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~ 271 (438)
+=+++++... ++...+.-|..|+ +.++ .+..+.++...+-+..|||.|..++---..|-+||+| .++
T Consensus 192 iKV~~ii~Fi--i~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPk 269 (541)
T COG0833 192 IKVLTIIGFI--ILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPK 269 (541)
T ss_pred HHHHHHHHHH--HHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHH
Confidence 2222222111 1111111222221 1111 2345677778888889999999999989999999998 677
Q ss_pred HHHHHHHHHHHHHHhhHhHH-HH-hhCcccc--------cccccc---ccCCCchHHHHHHHHHHHHHHHhHhhhhccHH
Q 013656 272 IYLFATLYVFTLTIPSATAV-YW-SFGDQLL--------NHSNAF---SLLPKNRWRDAAVILMLIHQFITFGFACTPLY 338 (438)
Q Consensus 272 ~~~~s~~~~~~~y~~~g~~g-y~-~fG~~~~--------~~~nil---~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 338 (438)
++.-...=+.++|+..-++- .. .|.|..+ .+++.. ++.+-.....+.|..++++++.+--=.+....
T Consensus 270 Aik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasS 349 (541)
T COG0833 270 AIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASS 349 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHH
Confidence 77555555566666532222 21 2333111 011221 12221223345555555555544332233333
Q ss_pred HHHHHH---------HcCCCCccchhhhhhhHHHHHHHHHHHHhcCc---chhHHHHHhhHHHhHHHHhHHHHHHHHHhc
Q 013656 339 FVWEKV---------IGMHDTKSICLRALARLPVVIPIWFLAIIFPF---FGPINSAVGALLVSFTVYIIPSLAHMLTYR 406 (438)
Q Consensus 339 ~~~~~~---------~~~~~~~~~~~r~~~r~~~v~~~~~la~~ip~---~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~ 406 (438)
.++-.+ ++.-+++......+.-..++.+..+++...+. +.-++++.|... .++.+-=++.|++.||
T Consensus 350 R~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 350 RMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 333222 22223344444444333333333333433332 444555554433 4455555677777665
Q ss_pred cc
Q 013656 407 KA 408 (438)
Q Consensus 407 ~~ 408 (438)
.-
T Consensus 428 A~ 429 (541)
T COG0833 428 AM 429 (541)
T ss_pred HH
Confidence 43
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.87 E-value=1.1e-06 Score=86.60 Aligned_cols=337 Identities=11% Similarity=0.100 Sum_probs=182.7
Q ss_pred ccHHHHHHHHHhhhhhhhh-chhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 013656 50 GSAWDAWFSCASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (438)
.+..+--+..+...||+|+ |+--.+.+.+|-- -++.-++.|++.+.-++.+.++.. ++++. + ++.+
T Consensus 15 L~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~-----~~p~~----g---SF~~ 81 (462)
T COG1113 15 LKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLV-----ANPVS----G---SFSD 81 (462)
T ss_pred hHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHH-----hCCCC----C---cHHH
Confidence 3444445778999999996 4667778888865 245556667776666666665421 12211 1 6888
Q ss_pred HHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHh--HhhccCCcchhhHHHHHHHH
Q 013656 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCA--TTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--pl~~~~~l~~l~~~s~~~~~ 206 (438)
.+++.+|++.+++.-......-...+.+++.+.+..+.+..++.+...+.++...++. =+.-.|.+.++.++ ++++
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfW--fAlI 159 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFW--FALI 159 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 9999999998887766666666677778887777665555555655555444444433 23344555555544 2222
Q ss_pred HHH--H----HHHHHHHHHHhhcC-C---CC-CCCC--CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhH
Q 013656 207 MTT--Y----TAWYLTIAAVVHGQ-V---EG-ASHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (438)
Q Consensus 207 ~~~--~----~~~~~~~~~~~~~~-~---~~-~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~ 272 (438)
-+. . ...+++......+. . ++ .+|. .|..+.+++.++-+.+|||++...+=--..|-|||+| .+|+
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 111 1 11111111111111 1 11 2232 3778889999999999999999999999999999998 5566
Q ss_pred HH-----HHHHHHHHHHHhhHhHHHHhhCccccccccccccC---CCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHH
Q 013656 273 YL-----FATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLL---PKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKV 344 (438)
Q Consensus 273 ~~-----~s~~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l---~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 344 (438)
+. +...++..+.++..+.-+-.++++ +++....+ +-+....+.|...+.+.+.+.---.+....++..+
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~---~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGED---GSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCC---CCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 63 233333333333333333333332 23433332 22222223333333333333222222222222222
Q ss_pred ---------HcCCCCccch-hhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHh--HHHHhHHHHHHHHHhc
Q 013656 345 ---------IGMHDTKSIC-LRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVS--FTVYIIPSLAHMLTYR 406 (438)
Q Consensus 345 ---------~~~~~~~~~~-~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~--~l~~ilP~l~~~~~~~ 406 (438)
+.+-+++.-. .-++...+..++..++....| +.++.++-+..+. .....+=.+.+++.+|
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111122222 234556666677778888888 4444444443322 3444556777888877
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.86 E-value=7.7e-06 Score=83.85 Aligned_cols=236 Identities=13% Similarity=0.085 Sum_probs=121.3
Q ss_pred CccHHH-HHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 49 GGSAWD-AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 49 ~~s~~~-a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
..+.++ .+....+.++|.|++.+|......+ ....+..++.+++..... -++.|..++..+.| -+.
T Consensus 13 ~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a----~~~~el~~~~p~~G--------G~y 79 (466)
T COG0531 13 KLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLA----LSYAELSSAIPSAG--------GAY 79 (466)
T ss_pred CcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHH----HHHHHHHhcCCCCC--------Cee
Confidence 355565 7777888899999999999998776 222222222223322221 22224433322222 244
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccc---cc--cchhhHHHHHHHHhHhhc--cCCcchhhHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND---RL--DKRTWTYIFGACCATTVF--IPSFHNYRIW 200 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~---~~--~~~~~~~i~~~~~~pl~~--~~~l~~l~~~ 200 (438)
.-+++.+||+..+......................+.+.+..+ .. +...+..+..++...+.. .+..+.....
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~ 159 (466)
T COG0531 80 AYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKI 159 (466)
T ss_pred eehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5667779987775544443332222222222222221111111 11 112222222222222222 2222323333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-C----CcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHH
Q 013656 201 SFLGLGMTTYTAWYLTIAAVVHGQVEGASH-T----APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYL 274 (438)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~ 274 (438)
..+.....+...+.+.+..+.+....+... . .......+..++....++|.|-.....+.+|+|||+| .+|++.
T Consensus 160 ~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii 239 (466)
T COG0531 160 NSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAII 239 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHH
Confidence 222222222222222233333221111111 0 1123345778888899999999999999999999965 799999
Q ss_pred HHHHHHHHHHHhhHhHHHHhhCc
Q 013656 275 FATLYVFTLTIPSATAVYWSFGD 297 (438)
Q Consensus 275 ~s~~~~~~~y~~~g~~gy~~fG~ 297 (438)
.++..+.++|...........++
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 240 LSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999999988877776665
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.81 E-value=6.3e-05 Score=77.54 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=44.5
Q ss_pred HHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhhHhHHHHhhC
Q 013656 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFG 296 (438)
Q Consensus 238 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG 296 (438)
.+..+.....|+|.|-.....+.+|+|||+| .+|++..++.+..++|.+.-+......+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3455666678999999999999999999988 7999988888776666554444333334
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.74 E-value=3.4e-05 Score=79.48 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=87.7
Q ss_pred hHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhhHhHHHHhhCccccc--ccc------ccccCCCchHH
Q 013656 245 NILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQLLN--HSN------AFSLLPKNRWR 315 (438)
Q Consensus 245 ~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~--~~n------il~~l~~~~~~ 315 (438)
.+.|+|.|-..+....+|+|||+| .+|++..+...+.++|.+..+.-....+++..+ ++. .......+...
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLG 281 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHH
Confidence 457899999999999999999987 899999999999999988665544444433211 010 11111112222
Q ss_pred HHHHHHHHHHHHHhHhhh-hccHHHHHH--------HHHcCCCCccchhhhhhhH-HHHHHHHHHHHhcCcchhHHHHHh
Q 013656 316 DAAVILMLIHQFITFGFA-CTPLYFVWE--------KVIGMHDTKSICLRALARL-PVVIPIWFLAIIFPFFGPINSAVG 385 (438)
Q Consensus 316 ~~~~~~~~i~~~~s~pl~-~~p~~~~~~--------~~~~~~~~~~~~~r~~~r~-~~v~~~~~la~~ip~~~~i~~lvG 385 (438)
.+..+...+..+.+.... .-+.|.... +.+++.++++...+...-. ++..+..++....|+.++.++.+.
T Consensus 282 ~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~ 361 (474)
T TIGR03813 282 PILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILS 361 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 333333333333333222 223333221 2232212333344433222 222222333344576655555554
Q ss_pred hHHH--hHHHHhHHHHHHHHHhcccc
Q 013656 386 ALLV--SFTVYIIPSLAHMLTYRKAS 409 (438)
Q Consensus 386 a~~~--~~l~~ilP~l~~~~~~~~~~ 409 (438)
+++. ..+.|+++....++.+++++
T Consensus 362 ~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 362 QLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4432 34678888888877775443
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.69 E-value=7.7e-05 Score=77.35 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhhHhHH
Q 013656 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAV 291 (438)
Q Consensus 238 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~g 291 (438)
.+..++....|+|.|...+....+|+|||+| .+|++..++..+.++|.+.....
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677789999999999999999999987 89999999998888898864443
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.69 E-value=3.6e-05 Score=79.87 Aligned_cols=49 Identities=6% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhhHh
Q 013656 241 TGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSAT 289 (438)
Q Consensus 241 ~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~ 289 (438)
..+..++|+|.|-.......+|+|||+| ++|++..++..+.++|.+..+
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3444568999999999999999999987 899999988888888876443
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.46 E-value=2.4e-06 Score=88.11 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=121.8
Q ss_pred Hhhhhhhhhc-hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCCcc
Q 013656 60 ASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 138 (438)
Q Consensus 60 ~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 138 (438)
+..++|+|++ +.+.+..++|....++..++.+++...++.-+.+ ..++....+ .+...+++.+|+..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~e----ms~~~p~~G--------g~y~y~~~~lg~~~ 74 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAE----MSRRFPSAG--------GFYAYASRGLGPAL 74 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhh----hhhhhcccc--------chhhhhhhccCCcC
Confidence 4566777654 5677888899876677777777776666544443 332222222 45667778889887
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhcccccc--ccccc-chhh----HHHHHHHHhHhhccCCcchhhHHHH-HHHHHHHH
Q 013656 139 KAVGLAFNCTFLLFGSVIQLIACASNIYYI--NDRLD-KRTW----TYIFGACCATTVFIPSFHNYRIWSF-LGLGMTTY 210 (438)
Q Consensus 139 ~~~~~~~~~~~~~g~~~~~li~~~~~~~~~--~~~~~-~~~~----~~i~~~~~~pl~~~~~l~~l~~~s~-~~~~~~~~ 210 (438)
+...-.............+....+..+.+. ..+.. ...| ..++.+++..+... ..+..+.... +..+....
T Consensus 75 Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 75 GFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred CceeeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhH
Confidence 665433322222222222222233222222 12222 3333 33333333333322 2222222221 11111111
Q ss_pred HHHHHHHHH-H--hhc-CCCCC-------C--CCCc--------ccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-
Q 013656 211 TAWYLTIAA-V--VHG-QVEGA-------S--HTAP--------TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 268 (438)
Q Consensus 211 ~~~~~~~~~-~--~~~-~~~~~-------~--~~~~--------~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~- 268 (438)
.. .+++.. + ..+ .+.+. . ...+ .++.+++.++....++|.|-..+...-+|.|||+|
T Consensus 154 li-~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~ 232 (478)
T PF00324_consen 154 LI-AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKT 232 (478)
T ss_pred hh-hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhh
Confidence 11 111111 1 111 11111 0 0011 23677889999999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHhhHhHHHHhhCccc
Q 013656 269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (438)
Q Consensus 269 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 299 (438)
.+|+...++....++|+......-...+.+.
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 7899989999888999987776666666443
No 52
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.43 E-value=0.00025 Score=70.94 Aligned_cols=256 Identities=11% Similarity=0.052 Sum_probs=140.9
Q ss_pred HHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHHH
Q 013656 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMT 208 (438)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 208 (438)
++++.||.+|.++..+.+...+.|-.....+.+++.. ...++.+...|.++.++++...+..- .+.++.++-.+....
T Consensus 86 ~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~-~~~~~~~~~~~ili~g~l~~l~~ifG-~r~l~~l~~~a~~~~ 163 (442)
T COG1457 86 LSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAI-GSGTGLPVWAGILIIGVLMTLVTIFG-YRALHKLERIAVPLL 163 (442)
T ss_pred eecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccc-ccCCCCcHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 7778899999999888888888898888887777642 22366677778888887777776663 333333433333332
Q ss_pred HHHHHHHHHHHHh-hcCCCCCCCCCcccHHHHHHHHHhHHhhc-ccccchhhhhhcccCccc--chhHHHHHHHHHHHHH
Q 013656 209 TYTAWYLTIAAVV-HGQVEGASHTAPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQK--FKYIYLFATLYVFTLT 284 (438)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~--~~~~~~~s~~~~~~~y 284 (438)
.....+.+..... ++......-..|.++.++..+++...=.+ ..-+...+..+-+++|+. .-.....+......+-
T Consensus 164 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~ 243 (442)
T COG1457 164 LLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFM 243 (442)
T ss_pred HHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 2222233333333 22222222223555566665555332222 356778999999999884 3334445556666666
Q ss_pred HhhHhHHHHhhCccccccccccccCCCchHHHHHHHHHHHHHHHhHhhhhccHHHHHHHHHcCCCCccchhhhhhhHHHH
Q 013656 285 IPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVV 364 (438)
Q Consensus 285 ~~~g~~gy~~fG~~~~~~~nil~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~r~~~r~~~v 364 (438)
..+|.+...+-|+..+ ..+....++. +...+.+...+...++=-..+.+....+.... ++.++..|.....+.
T Consensus 244 ~ilGa~~a~a~g~~~~-~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~---~~l~k~~~~v~~~v~- 316 (442)
T COG1457 244 MILGAALAAAAGNADS-IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANII---PKLSKVTRVVIAGVG- 316 (442)
T ss_pred HHHHHHHHHhcCCCch-HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh---hhhhhHHHHHHHHHH-
Confidence 6778888877776542 1233333332 44444444444444443333333332222222 223344444433322
Q ss_pred HHHHHHHHh----cCcchhHHHHHhhHHHhHHHH
Q 013656 365 IPIWFLAII----FPFFGPINSAVGALLVSFTVY 394 (438)
Q Consensus 365 ~~~~~la~~----ip~~~~i~~lvGa~~~~~l~~ 394 (438)
..+++|+. ..++++++.++|+........
T Consensus 317 -igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I 349 (442)
T COG1457 317 -IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGV 349 (442)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 446777777777766544433
No 53
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.43 E-value=0.00087 Score=69.26 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=38.6
Q ss_pred HHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhh
Q 013656 239 YFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPS 287 (438)
Q Consensus 239 ~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~ 287 (438)
+..++....|+|.+-.......+|+|||+| .+|++..++.+..+++.+.
T Consensus 219 ~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 219 FLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHH
Confidence 445556677999999999999999999988 7999888877665544433
No 54
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.43 E-value=1e-05 Score=83.77 Aligned_cols=337 Identities=14% Similarity=0.073 Sum_probs=169.0
Q ss_pred HHHHHhhhhhhhhc-hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccccccccccHHHHHHhh
Q 013656 56 WFSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKE-NVSFKNHVIQWFEVLDGL 133 (438)
Q Consensus 56 ~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~-~~~~~~~~~~y~~l~~~~ 133 (438)
.+.-+..+||+|+. ....+.++.|-..-++..++.|...+.++ .++-|+..+.... + ++..-+.+.
T Consensus 38 ~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~----~~~~E~~~~~P~~aG--------s~~~ya~~~ 105 (554)
T KOG1286|consen 38 QMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSA----LCLGEFAVRFPVSAG--------SFYTYAYRF 105 (554)
T ss_pred EEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHH----HHHHHHheecccccc--------cceeeeeee
Confidence 34467889999986 45677777777755666666665555554 3334554433221 1 122233444
Q ss_pred cCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc---------ccccchhhHHHHHHH--HhHhhccCCcchhhHHHH
Q 013656 134 LGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN---------DRLDKRTWTYIFGAC--CATTVFIPSFHNYRIWSF 202 (438)
Q Consensus 134 ~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~---------~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~ 202 (438)
.|+.+..+.-.-.+..-...+......++..+.+.. ++.+...|..++.++ ++.+...+-....+....
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~ 185 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLA 185 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHH
Confidence 666655543322222222222233333444343432 444555555444332 344445554444444443
Q ss_pred HHHHHHHHH-HHH--HHHHHHhhcCCCCC------CC---CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-c
Q 013656 203 LGLGMTTYT-AWY--LTIAAVVHGQVEGA------SH---TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 269 (438)
Q Consensus 203 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~ 269 (438)
+.-+.+... .++ ++..+..++.+.++ ++ ..|..+.++++++-+..|+|.|-..+-..-.|-|||+| .
T Consensus 186 ~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~I 265 (554)
T KOG1286|consen 186 FNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAI 265 (554)
T ss_pred HHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccc
Confidence 333222211 111 11111111111121 11 12334667788999999999999999999999999998 7
Q ss_pred hhHHHHHHHHHHHHHHhhHhHHHHh--hCccccccccccc-----cCCCchHHH---HHHHHHHHHHHHhHhhhhccHHH
Q 013656 270 KYIYLFATLYVFTLTIPSATAVYWS--FGDQLLNHSNAFS-----LLPKNRWRD---AAVILMLIHQFITFGFACTPLYF 339 (438)
Q Consensus 270 ~~~~~~s~~~~~~~y~~~g~~gy~~--fG~~~~~~~nil~-----~l~~~~~~~---~~~~~~~i~~~~s~pl~~~p~~~ 339 (438)
++++..++..+.++|....+.--+. |.+...+++.... ......... +.++..++.+.++---...|.-.
T Consensus 266 P~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR 345 (554)
T KOG1286|consen 266 PKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSR 345 (554)
T ss_pred cHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHH
Confidence 8999999999999999877655443 3332121111000 111111222 56666666665554444445444
Q ss_pred HHHHHHc---------CCCCccchhhhhhhHHHHHHHHHHHHhcCc-----chhHHHHHhhHHHhHHHHhHHHHHHHHHh
Q 013656 340 VWEKVIG---------MHDTKSICLRALARLPVVIPIWFLAIIFPF-----FGPINSAVGALLVSFTVYIIPSLAHMLTY 405 (438)
Q Consensus 340 ~~~~~~~---------~~~~~~~~~r~~~r~~~v~~~~~la~~ip~-----~~~i~~lvGa~~~~~l~~ilP~l~~~~~~ 405 (438)
.+..+-. .-+++....+ ..++..+...+.++.... ++.++++.|-- +.+.+.+=++.|++.|
T Consensus 346 ~l~amA~~G~~Pk~f~~v~~~g~P~~--a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 346 VLYALAKDGLAPKFFARVDRRGVPLV--AVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTLVALSHLRFR 421 (554)
T ss_pred HHHHHHhcCCcchHHhhcCCCCCchh--HHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHHHHHHHeeee
Confidence 4333322 1111222222 222223333444443332 46666666543 3556666667777666
Q ss_pred ccc
Q 013656 406 RKA 408 (438)
Q Consensus 406 ~~~ 408 (438)
+..
T Consensus 422 ~a~ 424 (554)
T KOG1286|consen 422 YAM 424 (554)
T ss_pred ecc
Confidence 543
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.37 E-value=0.001 Score=67.26 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhhHhHHHHhhCc
Q 013656 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGD 297 (438)
Q Consensus 238 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 297 (438)
.+..++-.-++++.|-....-+..|-||+++ -+|.+..+..+..++=..+-+.-..+-++
T Consensus 253 afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 253 AFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred HHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555667777888888889999999887 67777666666555544444444444453
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.34 E-value=0.00039 Score=71.00 Aligned_cols=175 Identities=12% Similarity=-0.011 Sum_probs=95.1
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccc----ccccc---cc------chhhHHHHHHHHhHhhcc
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIY----YINDR---LD------KRTWTYIFGACCATTVFI 191 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~----~~~~~---~~------~~~~~~i~~~~~~pl~~~ 191 (438)
++..+.+..||.+|.++..++..+...|-...+...+++.+. ...+. .+ ...+.+++.++.+++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 456688999999998877777766666666555554443221 11111 11 122334555555665555
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hcCCCC--CC--CCCcccHHHHHHHHHhHHhh-cccccchhhhhhcccC
Q 013656 192 PSFHNYRIWSFLGLGMTTYTAWYLTIAAVV-HGQVEG--AS--HTAPTKLVLYFTGATNILYT-FGGHAVTVEIMHAMWK 265 (438)
Q Consensus 192 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~--~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~ 265 (438)
.-.+-.+.....+.........+.+..... ++..+. .. ...+.....+..+++..+=. -..-.+.+++.+.+|+
T Consensus 157 ~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 444444445544444322222122222111 222221 11 12233344555555543322 2345679999999999
Q ss_pred cccchhHHHHHHHHHHHHHHhhHhHHHHh----hCccc
Q 013656 266 PQKFKYIYLFATLYVFTLTIPSATAVYWS----FGDQL 299 (438)
Q Consensus 266 p~~~~~~~~~s~~~~~~~y~~~g~~gy~~----fG~~~ 299 (438)
+++-.+....+.....+.....|.++... +|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88876667677777777777777777665 77654
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.19 E-value=0.00098 Score=68.65 Aligned_cols=265 Identities=9% Similarity=-0.034 Sum_probs=118.6
Q ss_pred cHHHHHHhhcCCccchhhhhhhH-HHHHHHHHHHHHHhhcccc----c-------cccc-----ccc--hhhHHHHHHHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNC-TFLLFGSVIQLIACASNIY----Y-------INDR-----LDK--RTWTYIFGACC 185 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~~li~~~~~~~----~-------~~~~-----~~~--~~~~~i~~~~~ 185 (438)
++.-+++..||.+|.++..+... +..++--..+....++.+. . .+++ .+. ....+++.++.
T Consensus 90 ~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~ 169 (484)
T PRK11375 90 PFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVN 169 (484)
T ss_pred ChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHH
Confidence 67789999999999776544442 2333322222222221111 0 1111 111 12223444555
Q ss_pred hHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCC------CCcccHHHHHHHHHhHHhhcc-cccchh
Q 013656 186 ATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVH-GQVEGASH------TAPTKLVLYFTGATNILYTFG-GHAVTV 257 (438)
Q Consensus 186 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~faf~-~~~~~~ 257 (438)
.+..+ ...+.+++++.++..........+.+..+.+ |..+-.+. ........+..++...+=++. .-.+.|
T Consensus 170 ~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~ 248 (484)
T PRK11375 170 VGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSAS 248 (484)
T ss_pred HHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 56554 3455666666555544433222222223322 21111111 011112334444443333444 345789
Q ss_pred hhhhcccCcccchhHHHHHHHHHHHHHHhhHhHH----HHhhCccccccccccccCCCchHHHHHHHHHHHHHHHh-Hhh
Q 013656 258 EIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAV----YWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFIT-FGF 332 (438)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~g----y~~fG~~~~~~~nil~~l~~~~~~~~~~~~~~i~~~~s-~pl 332 (438)
++.+..|++++-.+....+..+...+....|++. ...||+..-|...++....+......+.+...++...+ -..
T Consensus 249 D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 249 DFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred chhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888766655556655554444444433 34677654322233443332222223444445544444 333
Q ss_pred hhccHHHHHHHHHcCCCCccchhhhhhhHHHHHHHHHHHH--hcCc---chhHHHHHhhHHHhHHHHh
Q 013656 333 ACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAI--IFPF---FGPINSAVGALLVSFTVYI 395 (438)
Q Consensus 333 ~~~p~~~~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~--~ip~---~~~i~~lvGa~~~~~l~~i 395 (438)
...+.-.-+...+.++ -..+|...-. -++..+++. .+.+ |.+++++.|++.+.+...+
T Consensus 329 N~ys~~~~l~~l~pk~---i~~~~~~~i~--~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 329 NIIPAGYQIAALAPTK---LTYKNGVLIA--SIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred hcccHHHHHHHhCcCc---cchhhHHHHH--HHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555455554321 1222221111 011122221 1222 7777778777776655444
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.91 E-value=0.0062 Score=57.98 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=77.0
Q ss_pred HHHHhhhhhhhhchhh---HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhh
Q 013656 57 FSCASNQVAQVLLTLP---YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGL 133 (438)
Q Consensus 57 ~~l~~~~iG~GiL~lP---~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~ 133 (438)
+-.+.+.+|+|.=+== .-|..-|+. |..-.++.+.+-..++..+.+.-.+.+ .++|+|+-++.
T Consensus 10 f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~-------------a~~y~~~~~~v 75 (349)
T COG3949 10 FAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN-------------ATSYREILKYV 75 (349)
T ss_pred HHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccchHHHHHHH
Confidence 4466688999954422 223444555 555556666665666555443211111 12799999999
Q ss_pred cCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhH--HHHHHHHhHhhccCCcchhhHH
Q 013656 134 LGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT--YIFGACCATTVFIPSFHNYRIW 200 (438)
Q Consensus 134 ~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~--~i~~~~~~pl~~~~~l~~l~~~ 200 (438)
+||++.+..++....++++.+..-+-..++.+ ++.++...|. ++..+++..+.+.++.+.+-.+
T Consensus 76 ~~~~~~ki~d~~iif~lf~~~vVM~AGags~~---~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tv 141 (349)
T COG3949 76 SGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLL---EEMFGLPYWIGALIIILLVLILLFLGRVEGIITV 141 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhHH---HHHhCccHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 99999999999998888888765543334333 3555666664 3444444555566655554433
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.88 E-value=0.017 Score=57.88 Aligned_cols=171 Identities=9% Similarity=0.030 Sum_probs=94.5
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccccccc----ccccchhhHHHHHHHHhHhhccCCcchhhHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIW 200 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~----~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 200 (438)
++.-+++..||++|.++..+...+...|--..+....++.+.... +..+...+..+++++..+.+.. ..+.++++
T Consensus 59 ~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-G~~~i~~~ 137 (386)
T TIGR02358 59 SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLS-GPLAFVWL 137 (386)
T ss_pred CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 577799999999998877666666666655555544444332211 1112234555555555555543 45666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHhHHhh-cccccchhhhhhcccCcccchhHHHHHHHH
Q 013656 201 SFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYT-FGGHAVTVEIMHAMWKPQKFKYIYLFATLY 279 (438)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~s~~~ 279 (438)
..++..........+.+....+...++.. ..+.+ ..+..+++...-. -..-...|++.+..|+|++..+....+..+
T Consensus 138 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i 215 (386)
T TIGR02358 138 NNWSVWLLLIATLWLLVVVFSKADLSELW-NRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFI 215 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhc-CCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHH
Confidence 66666554443333333333322111111 11111 2233233222110 123345899999999888877777778777
Q ss_pred HHHHHHhhHhHHHHhhCcc
Q 013656 280 VFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~~ 298 (438)
...+-.++|.....+.++.
T Consensus 216 ~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 216 GSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 7788888888777776643
No 60
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.66 E-value=0.1 Score=54.06 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=88.9
Q ss_pred HHHHHHHhhhhh-hhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHh
Q 013656 54 DAWFSCASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDG 132 (438)
Q Consensus 54 ~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 132 (438)
-..+...-+..+ .-.+++|-..-+.|+.......... ...+.....+..-..+++ + +++..|..|.-++
T Consensus 44 v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~---~------~~~~~T~~d~l~~ 113 (493)
T COG0591 44 VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLA---K------ARGATTIPDFLEA 113 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHh---c------ccCCccHHHHHHH
Confidence 344455555555 8899999999999987444333221 222222223232212222 1 2244588999999
Q ss_pred hcC-CccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHH
Q 013656 133 LLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (438)
Q Consensus 133 ~~G-~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 207 (438)
-|| |..|.+..++..+....-+..++...+..++.... .+...-.++.+.++...+.+--+++..+...+--..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~i 188 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLI 188 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 999 77777777888888888888888877765533323 444444455666777777777778887777655543
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.47 E-value=0.037 Score=55.78 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHhhhhhh-hhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 013656 50 GSAWDAWFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (438)
.+.+-..+.+..+.+|+ ..++.|-...+.|+.. ....+..+.........+.. ++++. +..|..|
T Consensus 8 ~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~---~~r~~----------~~~T~~e 73 (406)
T PF00474_consen 8 LGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAP---RLRRS----------GAVTIPE 73 (406)
T ss_dssp --HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHH---HHHHT----------T--SHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHH---hhccc----------chhhhhh
Confidence 44555666677777766 5677888888888763 32222222222222222232 22211 2237888
Q ss_pred HHHhhcCCcc--chhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 129 VLDGLLGPYW--KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 129 l~~~~~G~~~--~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
..++-+|++. +.+..+..++........++...+..++.. .+.+.....++.+.+.+..+..--++...+...+..+
T Consensus 74 ~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~-~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 74 YLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVL-FGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhc-cchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 9888899887 555444445555555566666655544432 3456666666677777778888777777777665554
Q ss_pred HH
Q 013656 207 MT 208 (438)
Q Consensus 207 ~~ 208 (438)
..
T Consensus 153 i~ 154 (406)
T PF00474_consen 153 IM 154 (406)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.44 E-value=0.15 Score=50.65 Aligned_cols=308 Identities=13% Similarity=0.058 Sum_probs=139.3
Q ss_pred HHHhhhhhhhhchhhHHH-Hhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhc
Q 013656 58 SCASNQVAQVLLTLPYSF-SQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 134 (438)
Q Consensus 58 ~l~~~~iG~GiL~lP~af-~~~G--~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 134 (438)
.+..-.+|+|.|=.|-.. +++| |..+++..++.|...-....+ + .. +. .. +|.++.++ +
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---a---v~---~~-----gG---~~~~l~~~-~ 64 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---A---LA---LV-----GG---GYDSLSAR-I 64 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---e---ee---ec-----CC---CHHHHHHH-h
Confidence 456677899999887655 4455 666666666655554333222 1 00 01 11 58888887 6
Q ss_pred CCccchhhhhhhHH---HHH----HHHHHHHHHhhcccccccc-c--ccchhhHHHHHHHHhHhhccCCcchhhHHHHHH
Q 013656 135 GPYWKAVGLAFNCT---FLL----FGSVIQLIACASNIYYIND-R--LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 135 G~~~~~~~~~~~~~---~~~----g~~~~~li~~~~~~~~~~~-~--~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 204 (438)
||+...+....... -.+ ...++|-...... .+. . .......+++..+.+.+++.| -|....+|
T Consensus 65 g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~i~p~---~~~~~~~~~l~i~siiff~i~~~l~~~~----~k~~~~iG 137 (378)
T TIGR00796 65 GKVFGILFTVILYLTIGPLFAIPRTATVSFEMGIAPL---LHSPTSLLALFIFSLIFFAVVLLLSLNP----SKLIDRVG 137 (378)
T ss_pred ChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHcCc----ccHHHHhH
Confidence 77765543222211 122 2234454332221 111 1 111122333333434444444 55566666
Q ss_pred HHHHHH---HHHHHHHHHHhhcCCCC--C--CCC--Ccc--cH-HHH--HHHHHhHHhhcccccchhhhhh-cccCcccc
Q 013656 205 LGMTTY---TAWYLTIAAVVHGQVEG--A--SHT--APT--KL-VLY--FTGATNILYTFGGHAVTVEIMH-AMWKPQKF 269 (438)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~~~~~~~--~--~~~--~~~--~~-~~~--~~~~~~~~faf~~~~~~~~i~~-~m~~p~~~ 269 (438)
-+.+-. ....+++.++.++..+. . ++. .+. .+ ..+ +.+++-+.|+. .++-.+.. ++|||++.
T Consensus 138 k~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~---iiv~~i~~~g~~~~~~~ 214 (378)
T TIGR00796 138 KFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGI---IVVNAIRSRGVTKPKKI 214 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCCHHHH
Confidence 654432 22244556665432211 1 110 110 00 111 24444445544 55566666 89998874
Q ss_pred -hhHHHHHH---HHHHHHHHhhHhHHHHhhCc--cccccccccccCCC---chH-HHHHHHHHHHHHHHhHhhhhccHHH
Q 013656 270 -KYIYLFAT---LYVFTLTIPSATAVYWSFGD--QLLNHSNAFSLLPK---NRW-RDAAVILMLIHQFITFGFACTPLYF 339 (438)
Q Consensus 270 -~~~~~~s~---~~~~~~y~~~g~~gy~~fG~--~~~~~~nil~~l~~---~~~-~~~~~~~~~i~~~~s~pl~~~p~~~ 339 (438)
+++...+. .....+|.-.+.+|...-+. +..+...++....+ ..+ ..+.-+.+.++.+++---....+.+
T Consensus 215 ~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~ 294 (378)
T TIGR00796 215 TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444 33345566666666543221 11012333333322 111 2233344444444443333334444
Q ss_pred HHHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHh
Q 013656 340 VWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY 405 (438)
Q Consensus 340 ~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~ 405 (438)
.+++.. +|.++ |. .-+..++.+++++.. .++.+++ +....+.++.|...-+...
T Consensus 295 ~f~~~~---~k~~y--~~-~v~~~~l~s~~ia~~--Gl~~Ii~----~~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 295 YFHKLV---PKLSY--KT-WVIVFTLFSFIVANL--GLTQIIS----ISIPVLMIIYPLAIVLILL 348 (378)
T ss_pred HHHHhc---CCCCH--HH-HHHHHHHHHHHHHHh--CHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 444442 22111 11 112233334444432 5666665 4566777888887776653
No 63
>PRK12488 acetate permease; Provisional
Probab=97.40 E-value=0.24 Score=52.01 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=78.5
Q ss_pred CccHHHHHHHHHhhhhhhh-hchhhHHHHhhchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcccccccccccH
Q 013656 49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTA-YLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~t~-~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
+.+.+...+.+..+.+|++ .++.|-...+.|+. +.... +...+.+.-. .++.. .+++ . ...|.
T Consensus 68 ~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~---~lr~-~---------g~~T~ 132 (549)
T PRK12488 68 GLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAE---RLRN-L---------GKYTF 132 (549)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHH---HHHH-C---------CCcch
Confidence 3445555566666666555 57888877778865 22111 1111111111 11221 2221 1 11267
Q ss_pred HHHHHhhcC-CccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHH
Q 013656 127 FEVLDGLLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (438)
Q Consensus 127 ~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 205 (438)
.|..++=|| |+.|.+..+..++....-...++...+..++.. .+.+...-+++.+++....+..--++...+...+-.
T Consensus 133 ~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l-~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 133 ADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL-FGISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 787777777 446666555555554555556666555544433 234555555666677777778877888777776665
Q ss_pred HHHH
Q 013656 206 GMTT 209 (438)
Q Consensus 206 ~~~~ 209 (438)
+..+
T Consensus 212 ~im~ 215 (549)
T PRK12488 212 VLLL 215 (549)
T ss_pred HHHH
Confidence 4433
No 64
>PRK11017 codB cytosine permease; Provisional
Probab=97.35 E-value=0.071 Score=53.74 Aligned_cols=170 Identities=12% Similarity=0.001 Sum_probs=84.6
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 204 (438)
++..+++..||.+|.++..+...+...+-...+....+..+... .+.+...+.+++.++..+..... .+.++++...+
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~-~~~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~ 149 (404)
T PRK11017 72 STHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA-TGLDINLLIVLSGLLMTVTAYFG-ISALTILSRIA 149 (404)
T ss_pred CHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 67889999999999887666665555554444433333222111 11223335556666666665543 34444444444
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCCCCCCCCcccHHHHHHHHHhHHhhc-ccccchhhhhhcccCcccchhHHHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVH--GQVEGASHTAPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQKFKYIYLFATLYVF 281 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~ 281 (438)
........+...+..+.+ |..+-... .+.+...+..++...+=.+ ..-.+.++..+..|++++-......+.....
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~ 228 (404)
T PRK11017 150 VPAIALLGGYSVWLAVNDVGGLDGLKAI-VPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGN 228 (404)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhcC-CCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHH
Confidence 333222221222222221 11111111 1111123444444332222 3456789999998887764444445555555
Q ss_pred HHHHhhHhHHHHhhCc
Q 013656 282 TLTIPSATAVYWSFGD 297 (438)
Q Consensus 282 ~~y~~~g~~gy~~fG~ 297 (438)
.+-.++|.....+.|+
T Consensus 229 ~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 229 SLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5555666665556554
No 65
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.21 E-value=0.3 Score=49.24 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=52.3
Q ss_pred ccHHHHHHhhcCCc-cchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHH
Q 013656 124 IQWFEVLDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 202 (438)
Q Consensus 124 ~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 202 (438)
.|..|..++-||++ .+.+..+..++..+.....++...+..++.. .+.+...-.++.++++...+..--++...+.-.
T Consensus 66 ~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~-~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~ 144 (407)
T TIGR00813 66 YTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELI-TGLDLYLSLLLLGAITILYTVFGGLKAVVWTDT 144 (407)
T ss_pred CchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 37888888889984 4555445555566666666766655544322 234444555566666667777777777777766
Q ss_pred HHHHHH
Q 013656 203 LGLGMT 208 (438)
Q Consensus 203 ~~~~~~ 208 (438)
+..+..
T Consensus 145 iQ~~i~ 150 (407)
T TIGR00813 145 IQAVIM 150 (407)
T ss_pred HHHHHH
Confidence 665443
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.16 E-value=0.39 Score=49.65 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhhhhhh-hhchhhHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 013656 51 SAWDAWFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (438)
Q Consensus 51 s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l~~~~~l~~-~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (438)
+.+-..+.+..+.+|+ ..++.|-...+-|+..... .+.+.... .+...+.....+..+|. +..|..|
T Consensus 44 ~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~---------~~~T~~e 112 (483)
T PRK09442 44 GGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLL--AMIQVPTVWLSLGILGKKFAILARKY---------NAVTLND 112 (483)
T ss_pred cHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc---------CCccHHH
Confidence 4454555565655554 6777886666677642111 11111111 11112221111111111 2347889
Q ss_pred HHHhhcCCcc-chhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHH
Q 013656 129 VLDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (438)
Q Consensus 129 l~~~~~G~~~-~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 207 (438)
..++-||++. +.+..+...+..+.....++...+..+... .+.+.....++.++++...+...-++...+...+-.+.
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~-~gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETA-TGISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999898764 333333333344444455555544443322 23555555566667777788888888877776665543
Q ss_pred H
Q 013656 208 T 208 (438)
Q Consensus 208 ~ 208 (438)
.
T Consensus 192 ~ 192 (483)
T PRK09442 192 M 192 (483)
T ss_pred H
Confidence 3
No 67
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.99 E-value=0.55 Score=48.36 Aligned_cols=150 Identities=12% Similarity=0.021 Sum_probs=81.3
Q ss_pred CccHHHHHHHHHhhhhhhh-hchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
+.+.+.....+..+.+|++ .++.|-...+.|+....... ....+.+.+...+..-..+.-+|. +..|.+
T Consensus 41 ~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~T~~ 110 (471)
T TIGR02119 41 SMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM-IQVPTGYFVLGVLGKKFAIISRKY---------NAITIN 110 (471)
T ss_pred cccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc---------CCccHH
Confidence 3555666667777777654 55677777777764211111 000111111111221111111111 233788
Q ss_pred HHHHhhcCCcc-chhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 128 EVLDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 128 ~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
|..++-||++. +++..+...+.+++....++...+..++.. .+.+....+++.+++....+...-++...+...+-.+
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~-~gi~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~ 189 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESL-TGLSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGI 189 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999899665 455555555556665556665555443322 2355555666666677777888878888877766654
Q ss_pred HHH
Q 013656 207 MTT 209 (438)
Q Consensus 207 ~~~ 209 (438)
..+
T Consensus 190 v~~ 192 (471)
T TIGR02119 190 VMF 192 (471)
T ss_pred HHH
Confidence 433
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.90 E-value=0.67 Score=47.97 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=68.3
Q ss_pred cHHHHHHHHHhhhhhh-hhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHH
Q 013656 51 SAWDAWFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (438)
Q Consensus 51 s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (438)
+.+-..+.+..+.+++ ..++.|-...+.|+.. ........+........+..-..++.++ + .+..|-.|.
T Consensus 39 ~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~--~------~~~~T~~e~ 109 (487)
T TIGR02121 39 GPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEA--A------HNSITLPDF 109 (487)
T ss_pred cHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHh--h------cCCccHHHH
Confidence 3444445555555553 3567786666778753 2111111111112222233211122110 1 123367788
Q ss_pred HHhhcCCccchhh---hhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 130 LDGLLGPYWKAVG---LAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 130 ~~~~~G~~~~~~~---~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
.++=||++.+.+. .+...+....-...++...+..++.. .+.+.....++.+++....+..--++...+.-.+..+
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~-~gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~ 188 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFEST-FGLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGL 188 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888887544432 22222222222334444433333322 2344444555566666777777777777766655544
Q ss_pred H
Q 013656 207 M 207 (438)
Q Consensus 207 ~ 207 (438)
.
T Consensus 189 i 189 (487)
T TIGR02121 189 L 189 (487)
T ss_pred H
Confidence 3
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.73 E-value=0.78 Score=46.24 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=58.9
Q ss_pred CccHHHHHHHHHhhhhhhh-hchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH-
Q 013656 49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW- 126 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y- 126 (438)
+.|.+|++...+.+++|.| ++++|-+.+..| .-+++.+.+.+++..-+.+.-..+..+||++ ++++ +|
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~~g--------~~~ 115 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DADG--------VFR 115 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CCCC--------CEe
Confidence 3899999999999999998 999999977777 4478888888888777766544443455532 1111 24
Q ss_pred ----HHHHHhhcCCccchh
Q 013656 127 ----FEVLDGLLGPYWKAV 141 (438)
Q Consensus 127 ----~~l~~~~~G~~~~~~ 141 (438)
..+-+.+.|||...+
T Consensus 116 GGP~yyi~~gl~~k~lg~l 134 (425)
T TIGR00835 116 GGPMYYIKKGLGMRWLAVL 134 (425)
T ss_pred cChHHHHHHHhCccHHHHH
Confidence 567666666654443
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.31 E-value=1.8 Score=45.54 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhhh-hhhchhhHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcccccccccccHHHH
Q 013656 52 AWDAWFSCASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (438)
Q Consensus 52 ~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~l~~~~~l~~-~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (438)
.+...+.+..+.++ ...++.|-...+.|+- +....+. ..+.+ ...+++.. .+++ . + ..|..|.
T Consensus 71 ~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~---~lrr-~---g------~~T~~d~ 135 (549)
T TIGR02711 71 GFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAE---RLRN-L---G------RYTFADV 135 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHH---HHHH-c---C------CccHHHH
Confidence 34444445555554 5678888777777764 2222211 11111 11112221 1221 1 1 1267787
Q ss_pred HHhhcCCc-cchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHH
Q 013656 130 LDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (438)
Q Consensus 130 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 207 (438)
.++=||.+ .|.+.-+...+....-...++...+..++.. .+.+...-.++.++++...+..--++...+...+-.+.
T Consensus 136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~-~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~i 213 (549)
T TIGR02711 136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELL-FGLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVL 213 (549)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77767644 4555444444433444455555555444332 23444444556666677777777777777776555443
No 71
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.02 E-value=0.3 Score=49.74 Aligned_cols=169 Identities=6% Similarity=-0.078 Sum_probs=76.8
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccc-ccccc-------------chhhH--HHHHHHHhHh
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-NDRLD-------------KRTWT--YIFGACCATT 188 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-~~~~~-------------~~~~~--~i~~~~~~pl 188 (438)
+...+++..||.+|.++..+...+...|-...+...+++.+... +...+ ...+. +++.++..+.
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 151 (440)
T PF02133_consen 72 PTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF 151 (440)
T ss_dssp -HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH
T ss_pred CchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 46678899999999988777776766666666655555544321 11111 11121 2222222322
Q ss_pred hccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCC-CCcccHHHHHHHHHhHHhhcc-cccchhhhhhcccC
Q 013656 189 VFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQV-EGASH-TAPTKLVLYFTGATNILYTFG-GHAVTVEIMHAMWK 265 (438)
Q Consensus 189 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~ 265 (438)
.. ...+.++.+..+.........+.+.+....+... +..+. ..+.....+..++...+-.+. .-.+.++..+.+|+
T Consensus 152 ~~-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~ 230 (440)
T PF02133_consen 152 AI-YGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKS 230 (440)
T ss_dssp HC-THHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--
T ss_pred Hh-cCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCC
Confidence 22 2344454444333332222211122222221111 11111 111111123333333332222 24556799999999
Q ss_pred cccchhHHHHHHHHHHHHHHhhHhHHHHh
Q 013656 266 PQKFKYIYLFATLYVFTLTIPSATAVYWS 294 (438)
Q Consensus 266 p~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 294 (438)
+++-.+....+...........|.+|...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 231 DTSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 88877777777766666666666666544
No 72
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.85 E-value=2.5 Score=43.07 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=106.8
Q ss_pred HhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHh--hc-----CCCCCCCCCcccHHHHHHHHHhHHhhcc-cccchhh
Q 013656 187 TTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV--HG-----QVEGASHTAPTKLVLYFTGATNILYTFG-GHAVTVE 258 (438)
Q Consensus 187 pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~ 258 (438)
.++..+-.+++|++-.++-..+.+.+..+.+-.+. +| +.|....+.+..+..+..++...+=.|. ..-|+|+
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~D 262 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPD 262 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCch
Confidence 33444456777777655555444433333333332 22 1221122233333344443333332232 3567899
Q ss_pred hhhcccCcccchhHHHHHH----HHHHHHHHhhHhHHHHhhCccccccccccccCCCchHHH-HHHHHHHHHHHHh-Hhh
Q 013656 259 IMHAMWKPQKFKYIYLFAT----LYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRD-AAVILMLIHQFIT-FGF 332 (438)
Q Consensus 259 i~~~m~~p~~~~~~~~~s~----~~~~~~y~~~g~~gy~~fG~~~~~~~nil~~l~~~~~~~-~~~~~~~i~~~~s-~pl 332 (438)
..+.-|+|+.-.+--.++. ....++-.+.+..++..||+..-|..++.+.+++..... .+-+.+++..+.. ..-
T Consensus 263 FsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~a 342 (497)
T COG1953 263 FTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAA 342 (497)
T ss_pred hhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHh
Confidence 9998888776443322233 333344444556667889998765567888888765554 4444444443333 222
Q ss_pred h-hccHHHHHHHHHcCCCCccchhhh---hhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhccc
Q 013656 333 A-CTPLYFVWEKVIGMHDTKSICLRA---LARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (438)
Q Consensus 333 ~-~~p~~~~~~~~~~~~~~~~~~~r~---~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~ 408 (438)
. .-|..|+..-. . +.-+ .+|- ..-+.+++.++-+=..-..+...++..|++.+.+...+. .=|+.++|+|
T Consensus 343 N~vsp~~D~s~l~-P--k~in-~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi--aDyflirk~~ 416 (497)
T COG1953 343 NIVSPGYDLSALF-P--KYIN-IKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI--ADYFLVRKGR 416 (497)
T ss_pred ccCChHHHHHHhc-c--cccc-hhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcCc
Confidence 2 23555553322 1 1111 2222 122233334444433444577777777777776665542 3344455544
Q ss_pred c
Q 013656 409 S 409 (438)
Q Consensus 409 ~ 409 (438)
.
T Consensus 417 ~ 417 (497)
T COG1953 417 L 417 (497)
T ss_pred c
Confidence 3
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.64 E-value=3.3 Score=43.01 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=45.9
Q ss_pred cHHHHHHhhcCCccchh---hhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHH
Q 013656 125 QWFEVLDGLLGPYWKAV---GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~---~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 201 (438)
|..|..++=||++.+.+ ..+...+....-...++...+..++.. .+.+....+++.+.+....+..--++...+.-
T Consensus 109 T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~-~gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 109 TLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFEST-FGMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred eHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66777777788754443 222222233333334444333333222 23455555666677777888887777777777
Q ss_pred HHHHHHH
Q 013656 202 FLGLGMT 208 (438)
Q Consensus 202 ~~~~~~~ 208 (438)
.+..+..
T Consensus 188 ~iQ~~im 194 (502)
T PRK15419 188 TVQASLM 194 (502)
T ss_pred HHHHHHH
Confidence 6665443
No 74
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.62 E-value=0.26 Score=48.17 Aligned_cols=148 Identities=15% Similarity=0.076 Sum_probs=90.0
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
.+.+.+-.+.|=..++-|+|-+.=|-.=.+.||+++.+.+++-+.+.--. ++|-.-- .+.+++-++.+
T Consensus 50 vP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaV--------HD~~sl~----~SvR~~G~Si~ 117 (376)
T PF02554_consen 50 VPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAV--------HDYGSLM----ASVRHKGKSIG 117 (376)
T ss_pred CCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHH--------HHHHHHh----hhhcCCCccHH
Confidence 34555566778888999999999999999999999999887644332111 1221100 00111122799
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 207 (438)
|++++..||+.+.+..+++.+.+.....++....++.+.. .+......+..+...+.+-....|.=.++...+.+++..
T Consensus 118 ~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~-~p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvl 196 (376)
T PF02554_consen 118 EIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN-SPWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVL 196 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHH
Confidence 9999999999999988888887777766665554443311 111122234444444444444434334456666666554
Q ss_pred H
Q 013656 208 T 208 (438)
Q Consensus 208 ~ 208 (438)
.
T Consensus 197 l 197 (376)
T PF02554_consen 197 L 197 (376)
T ss_pred H
Confidence 3
No 75
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.49 E-value=3.2 Score=41.76 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=41.0
Q ss_pred cCccHHHHHHHHHhhhhhhhh-chhhHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWTAYL 100 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~t~~l 100 (438)
++.|.+||+...+.+.+|+|- -+..-|..-.|-. +++.+.+.+++..-+-+.
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~ 69 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYA 69 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHH
Confidence 468999999999999999994 4677777755554 788888888887766553
No 76
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.22 E-value=4.9 Score=42.31 Aligned_cols=143 Identities=9% Similarity=-0.093 Sum_probs=70.5
Q ss_pred CccHHHHHHHHHhhhhh-hhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 49 GGSAWDAWFSCASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
+.+.+-..+.+..+.++ ...++.|-...+.|+..-...+ ..........+++.. .+|+. ...|-.
T Consensus 33 ~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p---~~rr~----------~~~T~~ 98 (552)
T TIGR03648 33 GVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAP---YLRKF----------GKYTVP 98 (552)
T ss_pred CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHH---HHHHC----------CCccHH
Confidence 34555556666666664 4567788766667764211111 111001112222232 22211 122566
Q ss_pred HHHHhhcCCcc-chhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 128 EVLDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 128 ~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
|.-++=||++. +.+..+...+........++...+..++.. .+.+...-+++.++++...+..--++...+.-.+..+
T Consensus 99 e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~-~gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 99 DFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRF-LEVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred HHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666687554 555444444444444445554444333222 2344444455666666777777777777666555543
No 77
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=94.99 E-value=4.5 Score=40.73 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhccc--cccc
Q 013656 335 TPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA--SARQ 412 (438)
Q Consensus 335 ~p~~~~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~--~~~~ 412 (438)
..-...++...+.+. +.+.+|...|....+++..+.+..-+.+.++.+.+.+.+..+-+..+.++++...|+. ..+-
T Consensus 307 ~a~~~~~~g~~~~~~-~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~ 385 (416)
T COG1914 307 YAGQIVMEGFLNWRI-PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKN 385 (416)
T ss_pred hhhHHHHHhhhcccC-chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccc
Confidence 344445555555332 3466777788777777666666655999999999999988887777777776666541 1222
Q ss_pred chhhhhhHHHHHHhhh
Q 013656 413 VKNCSYFDMLMVFWSK 428 (438)
Q Consensus 413 ~~~~~~~~~~~~~~~~ 428 (438)
++..+...|.++.+..
T Consensus 386 ~~~~~~~~~~v~~~i~ 401 (416)
T COG1914 386 PRWLTVLGWIVVILIV 401 (416)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3335555666554433
No 78
>PRK09395 actP acetate permease; Provisional
Probab=94.89 E-value=6.1 Score=41.63 Aligned_cols=82 Identities=9% Similarity=0.027 Sum_probs=48.1
Q ss_pred cHHHHHHhhcCCc-cchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHH
Q 013656 125 QWFEVLDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (438)
Q Consensus 125 ~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 203 (438)
|+.|..++=||++ .|.+..+...+..+.....++...+..++.. .+.+...-.++.++++...+..--++...+.-.+
T Consensus 133 T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~-~gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 133 TFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL-FGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred cHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 7888888778854 5555444444433343445555555444332 2355555566666777777777777777776655
Q ss_pred HHHH
Q 013656 204 GLGM 207 (438)
Q Consensus 204 ~~~~ 207 (438)
-.+.
T Consensus 212 Q~ii 215 (551)
T PRK09395 212 KAVL 215 (551)
T ss_pred HHHH
Confidence 5443
No 79
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.23 E-value=6.3 Score=38.97 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=43.2
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhc--cCCcchhhHHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF--IPSFHNYRIWS 201 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l~~~s 201 (438)
+..|..++-+||++.+...+...+.........++..+..+..+. ..+...|.++..+..+.+.+ .++.+.+....
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~ 120 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIPLWIWVLLVAVIAILLLWLSSGGYRRLERIL 120 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 456676777888877765555544444444444444433333332 55667777766666655555 55555555543
No 80
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.03 E-value=4.8 Score=42.50 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=27.4
Q ss_pred hhhhcccCccc-chhHHHHHHHHHHHHHHhhHhHHHH
Q 013656 258 EIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYW 293 (438)
Q Consensus 258 ~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~ 293 (438)
..-.|+|+|.| .++-...++.+++++|++..++--.
T Consensus 315 nMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 315 NMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred CcCccccCccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 45568999998 6776678888889999987765543
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=92.38 E-value=1.3 Score=46.52 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHh
Q 013656 53 WDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDG 132 (438)
Q Consensus 53 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 132 (438)
+--+-|=..++-|+|-+-=|..=+|.||.++++.+++-..+.- .+ .++-.-. .|.+++-++.+|++++
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~G-------aV-hD~~~L~----~S~R~~GrSig~ia~~ 153 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAG-------AV-QDFMVLF----VSTRRDGRSLGELVKE 153 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeec-------hh-hhhhhee----eeecCCCccHHHHHHH
Confidence 3345677888999999999999999999999999876433321 11 1221100 0111122379999999
Q ss_pred hcCCccchhhhhhhHHHHHHHHHH
Q 013656 133 LLGPYWKAVGLAFNCTFLLFGSVI 156 (438)
Q Consensus 133 ~~G~~~~~~~~~~~~~~~~g~~~~ 156 (438)
..|++++.+..+.+...+......
T Consensus 154 ~iG~~~~~lfli~i~~iliiviAv 177 (701)
T PRK15015 154 EMGPTAGVIALVACFMIMVIILAV 177 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988766665555444433
No 82
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.40 E-value=2.8 Score=41.71 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhcc
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFI 191 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 191 (438)
..+++++.+|+.|+.+..+...+.++++++..+..+++.++...++.+.+.|.++..+..+..+..
T Consensus 257 l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 257 LSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVANL 322 (378)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 678999999999999988888888999999888888877655544577777877777666655554
No 83
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=90.20 E-value=5 Score=41.30 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=62.5
Q ss_pred CccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 013656 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (438)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (438)
+.+.+-.+-|=..++-|+|-+-=|.-=+|.||.+|.+.+++-..+. =+.+ +|-.- -.|.+++=++.+|
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~Vfa-GaVh-------D~~~L----~~SvR~~G~Si~~ 118 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFA-GAVH-------DYFSL----MLSVRHGGKSIGE 118 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhh-hhhh-------hhhhe----eeeeccCCccHHH
Confidence 4555566778888999999999999999999999999987633332 1111 11100 0011112227899
Q ss_pred HHHhhcCCccchhhhhhhHHHHHHHHH
Q 013656 129 VLDGLLGPYWKAVGLAFNCTFLLFGSV 155 (438)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~ 155 (438)
++++.+|+..+.+..+...+.+.....
T Consensus 119 ia~~~lG~~a~~~~~~~~l~iliiv~A 145 (575)
T COG1966 119 IAGKYLGRTAKVFFLLLALILLILVGA 145 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999888766655554444433
No 84
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=89.40 E-value=26 Score=35.42 Aligned_cols=37 Identities=5% Similarity=0.192 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHhhcc-cccchhhhhhcccCcccchhHH
Q 013656 237 VLYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKYIY 273 (438)
Q Consensus 237 ~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~ 273 (438)
.....++|...|+-. |-....+.-..++|+++..+.-
T Consensus 214 ~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa 251 (439)
T COG0733 214 KVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSA 251 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhH
Confidence 445677888888776 5566677777888888876654
No 85
>PRK10484 putative transporter; Provisional
Probab=89.10 E-value=32 Score=35.99 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=22.4
Q ss_pred cccCcccchhHHHHHHHHHHHH---HHhhHhHHHHhhCc
Q 013656 262 AMWKPQKFKYIYLFATLYVFTL---TIPSATAVYWSFGD 297 (438)
Q Consensus 262 ~m~~p~~~~~~~~~s~~~~~~~---y~~~g~~gy~~fG~ 297 (438)
..|++++-+|....+.....+. ....|..++..|++
T Consensus 269 aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~ 307 (523)
T PRK10484 269 GAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD 307 (523)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577777777766554433333 33457778877876
No 86
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=85.19 E-value=38 Score=35.37 Aligned_cols=87 Identities=8% Similarity=-0.003 Sum_probs=44.1
Q ss_pred hHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hc--------CCCCCCCCCcccHHHHHHHHHhHHhhcc-cccc
Q 013656 186 ATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV-HG--------QVEGASHTAPTKLVLYFTGATNILYTFG-GHAV 255 (438)
Q Consensus 186 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~ 255 (438)
..+...|.+++...........-......+.+.++. .| ..|+.+.. .+..-...+++-..|+.+ |.+.
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l--~~~~vW~~A~~Q~ffsl~ig~G~ 268 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKL--LDPKVWIAALGQVFFSLSIGFGI 268 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGT--TSHHHHHHHHHHHHHHTTTTSSH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchh--hHHHHHHHHHHHHhhccCCCcce
Confidence 344556667766665554433212222223333432 12 12333221 222334678899999997 5777
Q ss_pred hhhhhhcccCcccchhHHH
Q 013656 256 TVEIMHAMWKPQKFKYIYL 274 (438)
Q Consensus 256 ~~~i~~~m~~p~~~~~~~~ 274 (438)
....-..+++.++..+...
T Consensus 269 ~it~~Sy~~~~~n~~~~a~ 287 (523)
T PF00209_consen 269 MITYGSYNKFKNNIFRDAL 287 (523)
T ss_dssp HHHHHTTS-TTS-SHHHHH
T ss_pred EEEEcCcCCCCccccccce
Confidence 7777777777777666443
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=85.04 E-value=5.4 Score=41.45 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=34.5
Q ss_pred HHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHHHHHHHHhh
Q 013656 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPS 287 (438)
Q Consensus 238 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~ 287 (438)
.+|+-|+++.=+..|.-.=..+.+..++|++ .++-...+......+|+.+
T Consensus 224 tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 224 TFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred ceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhh
Confidence 4566667666666665555677888999988 5666667777777777553
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=82.81 E-value=8.8 Score=38.83 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=77.3
Q ss_pred Hhhhhhhhhc---hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCC
Q 013656 60 ASNQVAQVLL---TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP 136 (438)
Q Consensus 60 ~~~~iG~GiL---~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 136 (438)
+++.-.-|.- ..-....++|++.++.+.++++.+.+.....-. .+.. ..+ ..+ -..+++++.+|+
T Consensus 206 i~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~----~~~~-----~~~-g~~--lL~~i~~~~~G~ 273 (427)
T PF05525_consen 206 INAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSG----SFPD-----DIN-GAE--LLSQIANHLFGS 273 (427)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc----cccC-----CCC-HHH--HHHHHHHHHcCh
Confidence 3334444443 444556667777777777776666544421100 0000 000 011 266789999999
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccC
Q 013656 137 YWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIP 192 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 192 (438)
.|..+..+....-|+.+++.-...+++.++..-+..+.+.|.++++++.+.++...
T Consensus 274 ~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~G 329 (427)
T PF05525_consen 274 AGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANLG 329 (427)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhC
Confidence 99998877777788888888887888766554447788889888887777776653
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=82.25 E-value=61 Score=32.90 Aligned_cols=310 Identities=14% Similarity=0.058 Sum_probs=144.1
Q ss_pred HHHHHHHhhhhhhhhchhhHHHH-hhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHH
Q 013656 54 DAWFSCASNQVAQVLLTLPYSFS-QMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (438)
Q Consensus 54 ~a~~~l~~~~iG~GiL~lP~af~-~~G--~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 130 (438)
-.-+.+..-..|+|=|=.|-..- ++| |+.+.+-+++.|..-=.-..+ .-+ +. +. ++++++
T Consensus 7 ~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi-a~~------~~-------~~---~~~~l~ 69 (427)
T PF05525_consen 7 IIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI-AVA------KS-------GG---GIEDLA 69 (427)
T ss_pred hHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHh------hc-------CC---CHHHHh
Confidence 34456788889999888887664 455 777887777766543322211 100 10 11 477777
Q ss_pred HhhcCCccchhhhhhhHHHH-HHHH--------HHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHH
Q 013656 131 DGLLGPYWKAVGLAFNCTFL-LFGS--------VIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (438)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~-~g~~--------~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 201 (438)
++ .||+...+.. ...++ .|-. +.|-+.....+.. +.+.....+.++++.+.+.+++-| -+.+-
T Consensus 70 ~~-v~~~f~~if~--~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p----~kivd 141 (427)
T PF05525_consen 70 SR-VGPKFALIFT--ILIYLSIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNP----SKIVD 141 (427)
T ss_pred cc-cCcHHHHHHH--HHHHHHHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhch----hhHHH
Confidence 66 4555433321 11111 1111 2332222221111 224455566677777777777666 34444
Q ss_pred HHHHHHH---HHHHHHHHHHHHhhcCCC--CCC--CC-Ccc--c-HHHH--HHHHHhHHhhcccccchhhhhh-cccCcc
Q 013656 202 FLGLGMT---TYTAWYLTIAAVVHGQVE--GAS--HT-APT--K-LVLY--FTGATNILYTFGGHAVTVEIMH-AMWKPQ 267 (438)
Q Consensus 202 ~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~--~~-~~~--~-~~~~--~~~~~~~~faf~~~~~~~~i~~-~m~~p~ 267 (438)
.+|-+.+ +....++++.++.+...+ +.+ +. .|. . .+++ ..+++-+.|+- .++-.+.+ ..++++
T Consensus 142 ~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~---iIi~~i~~~g~~~~k 218 (427)
T PF05525_consen 142 RIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI---IIINAIRQKGYKDKK 218 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHhCCCCHH
Confidence 4443322 122234555666543222 111 11 110 1 1112 34555555543 33333333 234445
Q ss_pred cchhHH-H---HHHHHHHHHHHhhHhHHHHhhCc---cccccccccccCCCc---hH-HHHHHHHHHHHHHHhHhhhhcc
Q 013656 268 KFKYIY-L---FATLYVFTLTIPSATAVYWSFGD---QLLNHSNAFSLLPKN---RW-RDAAVILMLIHQFITFGFACTP 336 (438)
Q Consensus 268 ~~~~~~-~---~s~~~~~~~y~~~g~~gy~~fG~---~~~~~~nil~~l~~~---~~-~~~~~~~~~i~~~~s~pl~~~p 336 (438)
+.++.. . ++.....++|...+..|...-+. +.+ .+.++....+. .. ..+..+.+.++.+++-.-....
T Consensus 219 ~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~-g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a 297 (427)
T PF05525_consen 219 EIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDIN-GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISA 297 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCC-HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433 2 33444456677777776655432 222 23444444321 11 2334444555555554444555
Q ss_pred HHHHHHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHH
Q 013656 337 LYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT 404 (438)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~ 404 (438)
+-+.+++..+ |.++..... ..++.++++|.. .++.++++ ...++.++.|...-+..
T Consensus 298 ~a~yf~~~~~---kisY~~~v~---i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 298 CAEYFSELFP---KISYKVWVI---IFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHHHhc---ccChHHHHH---HHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 6666666654 112221111 122233333321 24455544 45678888898877775
No 90
>PRK00701 manganese transport protein MntH; Reviewed
Probab=81.25 E-value=67 Score=32.76 Aligned_cols=35 Identities=3% Similarity=-0.204 Sum_probs=20.8
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLI 159 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li 159 (438)
+..|+.++-+||++.++.......-+.......++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 129 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVI 129 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899887776544433333333344443
No 91
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=76.38 E-value=96 Score=31.79 Aligned_cols=284 Identities=9% Similarity=0.013 Sum_probs=133.8
Q ss_pred cHHHH-HHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHH
Q 013656 125 QWFEV-LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (438)
Q Consensus 125 ~y~~l-~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 203 (438)
|..|. +++.-.++.|++..+..++-.+.-.+.|++..+..+..+ .+.+...-.++.++++.....+--++...|...+
T Consensus 105 T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l-~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~ 183 (529)
T COG4147 105 TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLL-LGVPYHVGVVIGGILMMVYVVLGGMKATTWVQII 183 (529)
T ss_pred chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCceeehhhHhHHHHHHHHhcchhhhhHHHHH
Confidence 44444 444444556665444433333333455665544433221 2344455555666677777777777777777665
Q ss_pred HHHHHHHHHHHHHH-HHHh-hcC-----------CC---CCC----CCCcccHHHHHHHHHhHHhhccc-ccchhhhhhc
Q 013656 204 GLGMTTYTAWYLTI-AAVV-HGQ-----------VE---GAS----HTAPTKLVLYFTGATNILYTFGG-HAVTVEIMHA 262 (438)
Q Consensus 204 ~~~~~~~~~~~~~~-~~~~-~~~-----------~~---~~~----~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~ 262 (438)
-.+..+....++.+ .... .+. ++ +.+ +....++.+++...=..++...+ .+++...++
T Consensus 184 qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfT- 262 (529)
T COG4147 184 QAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFT- 262 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEe-
Confidence 55433221111111 1111 111 10 000 11123344443322233444433 222222222
Q ss_pred ccCcccchhHHHHHHHHHHHHHHhhHhHHHHh---hCcccc-------------c--ccccccc-----------CCCch
Q 013656 263 MWKPQKFKYIYLFATLYVFTLTIPSATAVYWS---FGDQLL-------------N--HSNAFSL-----------LPKNR 313 (438)
Q Consensus 263 m~~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~---fG~~~~-------------~--~~nil~~-----------l~~~~ 313 (438)
-.+-|+-++++.++..++..+|+..-+.|+.+ -+.+.. | .+-+... +.+++
T Consensus 263 vp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~ 342 (529)
T COG4147 263 VPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGP 342 (529)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCc
Confidence 33345567888899999999999988888765 221110 0 0011111 11112
Q ss_pred H-H-HHHHHHHHHHHHHhHhhhhc----cHHHHHHHHHcCC--C-CccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHH
Q 013656 314 W-R-DAAVILMLIHQFITFGFACT----PLYFVWEKVIGMH--D-TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAV 384 (438)
Q Consensus 314 ~-~-~~~~~~~~i~~~~s~pl~~~----p~~~~~~~~~~~~--~-~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lv 384 (438)
| . .++-..+...+-+.-.+.+. -..|...+.++.+ + ++-+..|+. ..++.+....+++.-|+ ++..++
T Consensus 343 ~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~-~v~~~vva~~lgi~~~g--nVaflV 419 (529)
T COG4147 343 WVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIA-VVILGVVAILLGILPPG--NVAFLV 419 (529)
T ss_pred eehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHH-HHHHHHHHHHheecCCc--cHHHHH
Confidence 2 1 12222222223333333222 2234444444422 1 122333333 22333455666777777 778888
Q ss_pred hhHHHhHHHHhHHHHHHHHHhcccccccch
Q 013656 385 GALLVSFTVYIIPSLAHMLTYRKASARQVK 414 (438)
Q Consensus 385 Ga~~~~~l~~ilP~l~~~~~~~~~~~~~~~ 414 (438)
|--++...+--+|.+.+ -++++|..++++
T Consensus 420 a~AF~lAaSa~fPvivl-glfWKr~n~~GA 448 (529)
T COG4147 420 ALAFALAASANFPVIVL-GLFWKRLNTAGA 448 (529)
T ss_pred HHHHHHHHHcccchhhH-HHHHhhccHHhH
Confidence 87788778888898876 455666665543
No 92
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=72.90 E-value=49 Score=33.20 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=70.3
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCCccchhhhhhhHHHHHH
Q 013656 73 YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLF 152 (438)
Q Consensus 73 ~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g 152 (438)
..-..+|++.++.+-+++..+.+... .. .+. .+......++ ......+.||+.|+.+.-.+..+-|..
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa----~s-~~~-----~~~~~nG~~I--L~~~s~~~fG~~G~~lL~~iv~lACLT 291 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGA----TS-ASA-----AGLAANGGQI--LSAYSQHLFGSYGSILLGLIVFLACLT 291 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----ch-Hhh-----cccccchHHH--HHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 34445788877777777666654441 11 010 0011111222 566788899999999877777777888
Q ss_pred HHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccC
Q 013656 153 GSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIP 192 (438)
Q Consensus 153 ~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 192 (438)
+++.-+..|++.+....+..+.+.|..++.++.+..+...
T Consensus 292 TaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan~G 331 (431)
T COG1114 292 TAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVANLG 331 (431)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhh
Confidence 8888888888766555557888899888888777766553
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=61.27 E-value=63 Score=32.87 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=66.2
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHhhcCCccchhhhhhhHHHHHH
Q 013656 73 YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLF 152 (438)
Q Consensus 73 ~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g 152 (438)
....++|.+.++.+.++++.+.+....--. .+.. .+ ++ .+ =....+.+.+|+.++.+..+....-++.
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~----~~~~-~~-~g----~~--il~~~~~~~~G~~G~~ll~iiv~lACLT 293 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSAS----LVDQ-SA-NG----AA--ILHAYVQHTFGGGGSFLLAALIFIACLV 293 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccC-CC-cH----hH--HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 344557777777777776666554421100 0100 00 01 11 1445778889999999877777777888
Q ss_pred HHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccC
Q 013656 153 GSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIP 192 (438)
Q Consensus 153 ~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 192 (438)
+++.-...+++.++... +.+.+.|.++.+++.++++...
T Consensus 294 TaIGLi~a~a~~f~~~~-~isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 294 TAVGLTCACAEFFAQYV-PLSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHHhH
Confidence 87777777776554332 3677778888888888877664
No 94
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.15 E-value=1.9e+02 Score=29.54 Aligned_cols=45 Identities=16% Similarity=0.092 Sum_probs=23.9
Q ss_pred HHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013656 58 SCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYR 109 (438)
Q Consensus 58 ~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~ 109 (438)
.+.++.+|+|.=- .-....++++.++|.+-.+=.-++..+...|.
T Consensus 293 ~Lfsa~lGsG~Ql-------f~l~~~ii~~Alvg~fy~~rGal~saaI~vYA 337 (593)
T KOG1277|consen 293 LLFSAVLGSGAQL-------FTLVLIIIMLALVGVFYTERGALLSAAIVVYA 337 (593)
T ss_pred HHHHHHhccccch-------HHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 3888899999311 11233466666666654443334444433444
No 95
>PRK09928 choline transport protein BetT; Provisional
Probab=52.37 E-value=3.4e+02 Score=29.42 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=25.5
Q ss_pred HHHHHhhhhhhhhchhh----HH-HH-----hhc----hHHHHHHHHHHHHHHHHHHHHHH
Q 013656 56 WFSCASNQVAQVLLTLP----YS-FS-----QMG----MLSGILLQIFYGFLGSWTAYLIS 102 (438)
Q Consensus 56 ~~~l~~~~iG~GiL~lP----~a-f~-----~~G----~~~gii~l~~~~~l~~~t~~ll~ 102 (438)
+..+.++-+|+|++.-- .. +. +.| --.+.....+=+.+.-|+.|.+.
T Consensus 99 ~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalv 159 (679)
T PRK09928 99 AAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALM 159 (679)
T ss_pred HHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35588888999887432 11 11 111 11244455555666777777543
No 96
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=50.14 E-value=3.1e+02 Score=30.04 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHhhhhhhh-hchhhHHHHhhchHHHHHHHHHHHHHHHHHH
Q 013656 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTA 98 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~t~ 98 (438)
++..+.+.=.+-.+.|.= .+=+-|..-.+|..-|.++.++++++++.|+
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTa 164 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTA 164 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455543 2446777788888888888888777666664
No 97
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=49.64 E-value=3.2e+02 Score=28.33 Aligned_cols=41 Identities=7% Similarity=-0.150 Sum_probs=21.0
Q ss_pred cchhhhhhcccCcccchhHHHHHHHHHH-HHHHhhHhHHHHh
Q 013656 254 AVTVEIMHAMWKPQKFKYIYLFATLYVF-TLTIPSATAVYWS 294 (438)
Q Consensus 254 ~~~~~i~~~m~~p~~~~~~~~~s~~~~~-~~y~~~g~~gy~~ 294 (438)
+.+--....+.+-+..|..+...+.... ...+-++++|-.+
T Consensus 317 PfvG~FiArISkGRTIRE~il~~~~~psl~~~~wf~ifGg~a 358 (485)
T PF02028_consen 317 PFVGLFIARISKGRTIREFILGVLLVPSLFCFLWFSIFGGYA 358 (485)
T ss_dssp HHHHHHHHHCTTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcCHHHHHHHHHHhhHHHHHHHHHHHCchH
Confidence 3444455667777776666644444432 2233345555443
No 98
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=39.50 E-value=70 Score=24.36 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=36.0
Q ss_pred HHhHHhhcccccchhhhhhcccCcccchhHHHHHHHHHHHHHHhhHhHHHHhhCcc
Q 013656 243 ATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 243 ~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~ 298 (438)
.|++..+-.|.....++.+.-.+|.+..+-....+.++.-+-++.|++.|..||.-
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~~C 72 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYRKC 72 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555555555555677776656666555444445555666777899999999943
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=36.43 E-value=4.8e+02 Score=26.63 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhhhhhchhhHHH-Hhhc--hHHHHHHHHHHHHH
Q 013656 53 WDAWFSCASNQVAQVLLTLPYSF-SQMG--MLSGILLQIFYGFL 93 (438)
Q Consensus 53 ~~a~~~l~~~~iG~GiL~lP~af-~~~G--~~~gii~l~~~~~l 93 (438)
+..-+.+..-..|+|=|=.|-.. .++| |+.+.+-+++.|..
T Consensus 11 l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg 54 (439)
T PRK15433 11 IALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG 54 (439)
T ss_pred HHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34446688888999988888765 4455 77777766665443
No 100
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=32.13 E-value=5.3e+02 Score=25.82 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=32.7
Q ss_pred cHHHHHHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHhHHHHhHHHHHH
Q 013656 336 PLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAH 401 (438)
Q Consensus 336 p~~~~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~i--p~~~~i~~lvGa~~~~~l~~ilP~l~~ 401 (438)
......+..++.+. +.+.+|...|.+.+++..+++... .+...++-+...+ ..+.+|...-
T Consensus 316 ag~~v~~gfl~~~~-~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~----~~l~LP~~~i 378 (390)
T TIGR01197 316 SGQFVMEGFLNWRW-SPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVV----LSLLLPFALI 378 (390)
T ss_pred HHHHHHHHHcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH----HHHHHHHHHH
Confidence 44455777777543 234455566665666666566553 3444455444444 3455565443
No 101
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=30.17 E-value=99 Score=19.31 Aligned_cols=25 Identities=16% Similarity=0.506 Sum_probs=16.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013656 78 MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRS 110 (438)
Q Consensus 78 ~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~ 110 (438)
.|+++|++-..+.|++ ..++.+|++
T Consensus 7 ~GiVLGlipiTl~Glf--------vaAylQYrR 31 (37)
T PRK00665 7 CGIVLGLIPVTLAGLF--------VAAWNQYKR 31 (37)
T ss_pred hhHHHHhHHHHHHHHH--------HHHHHHHhc
Confidence 5778887777666654 355667764
No 102
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=29.64 E-value=1.2e+02 Score=29.47 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHHHHHHhHHhhccc--ccchhhhhh----------cccCcccchhHHH--H----HHHHHHHHHHhhHhHHHHhhCcc
Q 013656 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFKYIYL--F----ATLYVFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~~~~i~~----------~m~~p~~~~~~~~--~----s~~~~~~~y~~~g~~gy~~fG~~ 298 (438)
.+.+..+.+..|+|.. ....|++.+ .|+++++..|.-. . ....+.++=......|.+.||+-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 4567788888999964 445566666 5666555433321 2 22222222333688999999997
Q ss_pred ccccccccccCCC---chHHHHHHHHHHHH
Q 013656 299 LLNHSNAFSLLPK---NRWRDAAVILMLIH 325 (438)
Q Consensus 299 ~~~~~nil~~l~~---~~~~~~~~~~~~i~ 325 (438)
.+ ++.+.+.+.+ +...+++.++..++
T Consensus 225 ~r-Esgv~~rLs~taqn~l~nivTi~LGl~ 253 (360)
T PF03977_consen 225 LR-ESGVVERLSKTAQNELMNIVTIFLGLT 253 (360)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3566666643 44444444444443
No 103
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.08 E-value=7e+02 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhccc
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNI 165 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~ 165 (438)
..++-....||++.......+++..++.++.-++..+...
T Consensus 327 ~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v 366 (550)
T KOG1289|consen 327 IVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLV 366 (550)
T ss_pred HHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566677789999866556666666666666666555443
No 104
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=27.81 E-value=1.2e+02 Score=18.94 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=16.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013656 78 MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRS 110 (438)
Q Consensus 78 ~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~ 110 (438)
.|+++|++-..+.|++ ..+|.+|++
T Consensus 7 ~GiVLGlipvTl~Glf--------vaAylQYrR 31 (37)
T CHL00008 7 FGIVLGLIPITLAGLF--------VTAYLQYRR 31 (37)
T ss_pred hhHHHHhHHHHHHHHH--------HHHHHHHhh
Confidence 5777787777666554 355667764
No 105
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=27.01 E-value=2.2e+02 Score=21.44 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=29.8
Q ss_pred chhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhhhhhHHHHHHhh
Q 013656 377 FGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNCSYFDMLMVFWS 427 (438)
Q Consensus 377 ~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (438)
...+...-+++++. --.+.|..+|..+.+ |..+.++.|+...+..||..
T Consensus 14 ~l~vl~~y~~l~~~-YLlVvP~~l~~wm~~-RWy~~~~~Er~~~y~lvF~F 62 (81)
T PF10716_consen 14 TLLVLLAYAALAGL-YLLVVPLILYFWMNK-RWYVMSSFERLFMYFLVFLF 62 (81)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455443 345679988877765 44455677888877666544
No 106
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=26.39 E-value=7e+02 Score=25.41 Aligned_cols=30 Identities=7% Similarity=-0.052 Sum_probs=19.1
Q ss_pred ccCcccchhHHHHHHHHHHHHHHhhHhHHH
Q 013656 263 MWKPQKFKYIYLFATLYVFTLTIPSATAVY 292 (438)
Q Consensus 263 m~~p~~~~~~~~~s~~~~~~~y~~~g~~gy 292 (438)
-+|+++.++....+......+-...+..-+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~ 339 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLL 339 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777776655555555443
No 107
>PHA03048 IMV membrane protein; Provisional
Probab=25.16 E-value=1.9e+02 Score=22.24 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=33.9
Q ss_pred HHhHHhhcccccchhhhhhcccCcccchhHHHHHHHHHHHHHHhhHhHHHHhhCccc
Q 013656 243 ATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (438)
Q Consensus 243 ~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 299 (438)
.|++..+-.|.....++... + |....+-....+.++.-+-+++|++-|..||...
T Consensus 17 ~GIiLL~~aCIfAfidfsK~-k-~~~~~wRalsii~FIlgivl~lG~~ifsmy~r~C 71 (93)
T PHA03048 17 GGIILLAASCIFAFVDFSKN-K-ATVTVWRALSGIAFVLGIVMTIGMLIYSMWGRYC 71 (93)
T ss_pred HHHHHHHHHHHHhhhhhhcC-C-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55666665565556677766 3 4333333333444455567788999999999655
No 108
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.79 E-value=5e+02 Score=23.04 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=29.1
Q ss_pred hHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhhhhhHHH
Q 013656 379 PINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNCSYFDML 422 (438)
Q Consensus 379 ~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~ 422 (438)
.+++-+|-+.|..++++.|+..-+++.+. ..+..+-.|...|+
T Consensus 52 l~~g~~~~l~cn~ig~~yP~y~Sv~aIes-~~k~dD~~wL~YWi 94 (186)
T KOG1725|consen 52 LLFGSGGPLLCNLIGFLYPAYASVKAIES-PSKDDDTQWLTYWI 94 (186)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhC-CCCcchHHHHHHHH
Confidence 45667788889999999999998886652 22333334444554
No 109
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=23.61 E-value=4e+02 Score=21.55 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=37.8
Q ss_pred cchhHHHHHhhHHHhHHHHhHHHHHHHHHhccccc--ccchhhhhhHHHHHHhhhhhhhhhh
Q 013656 376 FFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASA--RQVKNCSYFDMLMVFWSKKLFSFVF 435 (438)
Q Consensus 376 ~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
.--+..++.+++.++.-.+++=+.+.+.+.+..+. ..-++||.+.= -++|+..+..+++
T Consensus 48 gtFPFNaFLsGf~s~VG~fVL~vsLR~Q~~p~n~~~f~~is~eRafaD-fv~~slvLh~~v~ 108 (112)
T PF02109_consen 48 GTFPFNAFLSGFISCVGQFVLTVSLRIQLNPENKSEFPGISPERAFAD-FVFCSLVLHFVVF 108 (112)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCChhhhhHH-HHHHHHHHHHhee
Confidence 33478899999999999999999999988844332 23334444321 2445555544443
No 110
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=23.30 E-value=2e+02 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhhhhhhhhchhhHHHHh
Q 013656 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQ 77 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL~lP~af~~ 77 (438)
.....+..+.+...+|+-+.-+||.+..
T Consensus 130 ~p~~~al~~~~sf~lg~liPllp~~~~~ 157 (213)
T PF01988_consen 130 SPWKAALATFLSFILGGLIPLLPYFFLP 157 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345788999999999999999999986
No 111
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=23.09 E-value=1.9e+02 Score=24.97 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=38.1
Q ss_pred cccccchhhhhhcccCcccchhHHHHHHHHHHHHHHhhHhHHHHhhCccc
Q 013656 250 FGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (438)
Q Consensus 250 f~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 299 (438)
+-.....+..+++.|+|+=-+.-.....+. .++|.+.|+.+|..+-...
T Consensus 24 ~~~~~~~~~wy~~L~kP~w~pp~~~f~~vW-tvLy~l~~iSa~lvW~~~~ 72 (161)
T COG3476 24 FFISSRDPNWYNNLKKPFWLPPEWAFPPVW-TVLYALIGISAYLVWEKGP 72 (161)
T ss_pred HHhccccHHHHHhccCCCCCChHHHhhHHH-HHHHHHHHHHHHHHHHHcC
Confidence 344566777999999999877666566665 6789999999999987654
No 112
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.95 E-value=2.8e+02 Score=24.20 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=8.1
Q ss_pred HhhhhhhhhchhhHH
Q 013656 60 ASNQVAQVLLTLPYS 74 (438)
Q Consensus 60 ~~~~iG~GiL~lP~a 74 (438)
+-..+|-+++++|..
T Consensus 82 i~~~i~l~~~~~~~v 96 (181)
T PF08006_consen 82 ILAIIGLGLLSFIIV 96 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556666665544
No 113
>PRK09950 putative transporter; Provisional
Probab=22.57 E-value=8.9e+02 Score=25.26 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=10.7
Q ss_pred HHHHHhhhhhhhhch
Q 013656 56 WFSCASNQVAQVLLT 70 (438)
Q Consensus 56 ~~~l~~~~iG~GiL~ 70 (438)
+..+.++-+|+|++.
T Consensus 90 ~aMlf~aG~G~gllf 104 (506)
T PRK09950 90 LFMFICAGLGSSTLY 104 (506)
T ss_pred HHHHHHHhhhhHHHH
Confidence 455778888888764
No 114
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=21.74 E-value=1.1e+02 Score=29.62 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHhHHhhccc--ccchhhhhh----------cccCcccch---hHHH---HHHHHHHHHHHhhHhHHHHhhCcc
Q 013656 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFK---YIYL---FATLYVFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~~~~i~~----------~m~~p~~~~---~~~~---~s~~~~~~~y~~~g~~gy~~fG~~ 298 (438)
.+.+..+.+..|+|.. ...-|++.+ .|+++++.. |.++ .....+.++=......|.+.||+-
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 4567888888999964 444566665 455544432 2221 222222222333688999999987
Q ss_pred ccccccccccCCC---chHHHHHHHHHHH
Q 013656 299 LLNHSNAFSLLPK---NRWRDAAVILMLI 324 (438)
Q Consensus 299 ~~~~~nil~~l~~---~~~~~~~~~~~~i 324 (438)
.+ ++.+.+.+.+ +...+++.++..+
T Consensus 225 lr-EsGv~~rl~~taqn~l~nivTifLGl 252 (354)
T TIGR01109 225 MR-ESGVVERLSKTASNELLNIVTILLGL 252 (354)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3566666653 3333444444333
No 115
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=21.25 E-value=1.1e+02 Score=30.23 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=49.1
Q ss_pred HHHHHHHHhHHhhccc--ccchhhhhh----------cccCcccch---hHHH---HHHHHHHHHHHhhHhHHHHhhCcc
Q 013656 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFK---YIYL---FATLYVFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~~~~i~~----------~m~~p~~~~---~~~~---~s~~~~~~~y~~~g~~gy~~fG~~ 298 (438)
.+.+..+.+..|||.. ..+-|++.+ .|+++++.. |.++ .....++++=......|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15475 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467788888999964 445566666 455544432 2221 222222222333688999999987
Q ss_pred ccccccccccCCC---chHHHHHHHHHHH
Q 013656 299 LLNHSNAFSLLPK---NRWRDAAVILMLI 324 (438)
Q Consensus 299 ~~~~~nil~~l~~---~~~~~~~~~~~~i 324 (438)
.+ ++-+.+.+.+ +...+++.++..+
T Consensus 296 lr-EsGVv~rLs~taqn~L~nivTIfLGl 323 (433)
T PRK15475 296 MR-ESGVVERLSDTVQNGLINIVTIFLGL 323 (433)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3566666654 3334444444443
No 116
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.90 E-value=1.1e+02 Score=30.13 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHhhccc--ccchhhhhh----------cccCcccch---hHHH---HHHHHHHHHHHhhHhHHHHhhCcc
Q 013656 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFK---YIYL---FATLYVFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~~~~i~~----------~m~~p~~~~---~~~~---~s~~~~~~~y~~~g~~gy~~fG~~ 298 (438)
.+.+..+.+..|||.. ..+-|++.+ .|+++++.. |.++ .....+.++=......|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15476 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467788888999964 444566666 455544432 2221 222222222333688999999987
Q ss_pred ccccccccccCCC---chHHHHHHHHHHH
Q 013656 299 LLNHSNAFSLLPK---NRWRDAAVILMLI 324 (438)
Q Consensus 299 ~~~~~nil~~l~~---~~~~~~~~~~~~i 324 (438)
.+ ++-+.+.+.+ +...+++.++..+
T Consensus 296 lr-EsGVv~rLs~taqn~L~nivTIfLGl 323 (433)
T PRK15476 296 MR-ESGVVERLSDTVQNGLINIVTIFLGL 323 (433)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3566666654 3334444444443
No 117
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.81 E-value=1.1e+02 Score=30.11 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHhhccc--ccchhhhhh----------cccCcccch---hHHH---HHHHHHHHHHHhhHhHHHHhhCcc
Q 013656 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFK---YIYL---FATLYVFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~~~~i~~----------~m~~p~~~~---~~~~---~s~~~~~~~y~~~g~~gy~~fG~~ 298 (438)
.+.+..+.+..|||.. ..+-|++.+ .|+++++.. |.++ .....++++=......|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15477 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467788888999964 444566666 455544432 2221 222222222333688999999987
Q ss_pred ccccccccccCCC---chHHHHHHHHHHH
Q 013656 299 LLNHSNAFSLLPK---NRWRDAAVILMLI 324 (438)
Q Consensus 299 ~~~~~nil~~l~~---~~~~~~~~~~~~i 324 (438)
.+ ++-+.+.+.+ +...+++.++..+
T Consensus 296 lr-EsGVv~rLs~taqn~L~nivTIfLGl 323 (433)
T PRK15477 296 MR-ESGVVERLSDTVQNGLINIVTIFLGL 323 (433)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3566666654 3334444444443
No 118
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.80 E-value=92 Score=20.41 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhHhHHHHhhCccc
Q 013656 274 LFATLYVFTLTIPSATAVYWSFGDQL 299 (438)
Q Consensus 274 ~~s~~~~~~~y~~~g~~gy~~fG~~~ 299 (438)
..++.+.+++..+.|...|.+||...
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 34556666667777888888998654
No 119
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=20.24 E-value=93 Score=20.67 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhCccc
Q 013656 272 IYLFATLYVFTLTIPSATAVYWSFGDQL 299 (438)
Q Consensus 272 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 299 (438)
+...++.+.+++..+.|..-|.+||...
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4445666666666677777788888654
Done!