Query 013656
Match_columns 438
No_of_seqs 153 out of 1231
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 1.9E-12 6.5E-17 130.5 29.1 238 48-298 8-253 (445)
2 3gia_A Uncharacterized protein 99.3 6.7E-10 2.3E-14 111.7 28.5 236 48-297 6-249 (444)
3 4djk_A Probable glutamate/gamm 99.1 2.8E-08 9.4E-13 101.7 28.4 236 48-299 11-264 (511)
4 2jln_A MHP1; hydantoin, transp 98.4 0.00013 4.3E-09 74.3 26.4 143 125-268 89-239 (501)
5 3dh4_A Sodium/glucose cotransp 96.8 0.56 1.9E-05 47.6 29.5 146 48-209 20-168 (530)
6 2xq2_A Sodium/glucose cotransp 96.3 1.2 4E-05 46.0 25.3 142 50-207 51-195 (593)
7 2wsw_A BCCT family betaine/car 54.0 1.8E+02 0.0061 28.9 20.8 153 51-207 92-270 (509)
8 2a65_A Leutaa, Na(+):neurotran 33.2 3.7E+02 0.013 26.7 29.5 62 237-298 242-309 (519)
9 4b4a_A TATC, SEC-independent p 26.9 3.3E+02 0.011 24.1 9.4 140 267-416 94-241 (249)
10 1q90_G Cytochrome B6F complex 18.3 1.1E+02 0.0039 18.3 2.8 24 78-109 7-30 (37)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.57 E-value=1.9e-12 Score=130.47 Aligned_cols=238 Identities=9% Similarity=-0.008 Sum_probs=136.3
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
+..+.++.+...+++++|+|++.+|...++.|.. +++..++.+++...... ++.|..++....+ ...
T Consensus 8 r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~----~~~el~~~~p~~G--------g~y 74 (445)
T 3l1l_A 8 HKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSM----VYAKMSFLDPSPG--------GSY 74 (445)
T ss_dssp CCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHH----HHHHHHHHCCCTT--------THH
T ss_pred CcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHH----HHHHHHccCCCCC--------Cch
Confidence 4578899999999999999999999999999964 66666666666544433 3334444332212 355
Q ss_pred HHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHH---HhHhhccCCcchhhHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGAC---CATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~---~~pl~~~~~l~~l~~~s~~~ 204 (438)
+.+++.+||+.+++.-.............+....++.+....+..+......+.... ++-..-....+....+..+.
T Consensus 75 ~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (445)
T 3l1l_A 75 AYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 677888999887765555444433333444444443332221211111111111111 11112222333333333332
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC----CCCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHH
Q 013656 205 LGMTTYTAWYLTIAAVVHGQVEGAS----HTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~ 279 (438)
....+...+.+++..+.+..+++.. .....++..+..++....|+|.+......+.+|+|||+| .+|+...+...
T Consensus 155 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~ 234 (445)
T 3l1l_A 155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI 234 (445)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 2222222212222222222222111 111122456788899999999999999999999999965 89999999999
Q ss_pred HHHHHHhhHhHHHHhhCcc
Q 013656 280 VFTLTIPSATAVYWSFGDQ 298 (438)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~~ 298 (438)
+.++|+..........+.+
T Consensus 235 ~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 235 AAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhcCCHH
Confidence 9999999888777666644
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.34 E-value=6.7e-10 Score=111.71 Aligned_cols=236 Identities=10% Similarity=0.016 Sum_probs=130.7
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (438)
+..+.++.+...+++++|+|++..|. +.+++|. .+++..++.+++...+.... .|..++....+ ..
T Consensus 6 r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~----~el~~~~P~~G--------g~ 72 (444)
T 3gia_A 6 KKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSY----TKLGAKIVSNA--------GP 72 (444)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHH----HHHHTTCCCTT--------TH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCC--------cH
Confidence 45788999999999999999998874 4556676 45666666666655544333 34443332211 35
Q ss_pred HHHHHhhcCCcc--chhhhhhhHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHH---HhHhhccCCcchhhHHH
Q 013656 127 FEVLDGLLGPYW--KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGAC---CATTVFIPSFHNYRIWS 201 (438)
Q Consensus 127 ~~l~~~~~G~~~--~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~---~~pl~~~~~l~~l~~~s 201 (438)
.+.+++.+|+++ .+.. ....+........+....++.+....+..+...+..+.... ++-..-.+..+......
T Consensus 73 y~~~~~~~G~~~~~g~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 73 IAFIHKAIGDNIITGALS-ILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp HHHHHHHHCSSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhHHHHhCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 567888899863 3221 11111111222223323332222211222222222111111 11222222334444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHhHHhhcccccchhhhhhcccCccc-chhHHHHHHHH
Q 013656 202 FLGLGMTTYTAWYLTIAAVVHGQVEGASH-TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~s~~~ 279 (438)
.+.....+...+.+++..+.+..+++... ..+..+.+++.++....|+|.|........+|+|||+| .+|++..++..
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~ 231 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILI 231 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHH
Confidence 33332222222222333333322222221 23445567888889999999999999999999999987 89999999999
Q ss_pred HHHHHHhhHhHHHHhhCc
Q 013656 280 VFTLTIPSATAVYWSFGD 297 (438)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~ 297 (438)
+.++|....+......+.
T Consensus 232 ~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 232 VMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 999999887766555543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.14 E-value=2.8e-08 Score=101.73 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=118.8
Q ss_pred cCccHHHHHHHHHhhhhhhhhchhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhccccccccccc
Q 013656 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRS--RKEKENVSFKNHVIQ 125 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~~--~~~~~~~~~~~~~~~ 125 (438)
+..+.++.+...++.++| +.++|. .++.|.. +++..++.+++.... ...++.|..+ +.. .+ .
T Consensus 11 r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~---~al~~ael~s~~~~P-~G--------G 74 (511)
T 4djk_A 11 KQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIP---VGLCAAEMATVDGWE-EG--------G 74 (511)
T ss_dssp -CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHH---HHHHHHHHHTTSCC------------C
T ss_pred ccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHH---HHHHHHHHcccccCC-CC--------C
Confidence 347788888889999986 567775 5677754 333333322222211 1223345554 332 22 3
Q ss_pred HHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccc--cccccch---hhHHH-HHHHHhHhhccCCcchhhH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI--NDRLDKR---TWTYI-FGACCATTVFIPSFHNYRI 199 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~--~~~~~~~---~~~~i-~~~~~~pl~~~~~l~~l~~ 199 (438)
....+++.+||+++++.-....+........+....++.+.+. .++.+.. .+.+. ...+++-..-....+....
T Consensus 75 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 154 (511)
T 4djk_A 75 VFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTAR 154 (511)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred hhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 5567788899988765444333332222222222222222222 2222211 11111 1111122222233444444
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHh---hcCCCC----CCCCCcc-cHHHHHHHHHhHHhhcccccchhhhhhcccCccc-c
Q 013656 200 WSFLGLGM-TTYTAWYLTIAAVV---HGQVEG----ASHTAPT-KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 269 (438)
Q Consensus 200 ~s~~~~~~-~~~~~~~~~~~~~~---~~~~~~----~~~~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~ 269 (438)
+..+.... .+...+.+++..+. .+.+.+ .+...|. .......++...+|+|.|........+|+|||+| .
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~i 234 (511)
T 4djk_A 155 IAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDY 234 (511)
T ss_dssp HTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccch
Confidence 44332221 11111122222221 121111 1111111 1122345577789999999999999999999987 8
Q ss_pred hhHHHHHHHHHHHHHHhhHhHHHHhhCccc
Q 013656 270 KYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (438)
Q Consensus 270 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 299 (438)
+|++..++..+.++|++..+......+++.
T Consensus 235 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 264 (511)
T 4djk_A 235 PLAMLLLMVAAICLSSVGGLSIAMVIPGNE 264 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeecCHhh
Confidence 999999999999999998887776666543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.40 E-value=0.00013 Score=74.31 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=77.4
Q ss_pred cHHHHHHhhcCCccchhhhhhhHHHHHHHHHHHHHHhhcccccccc---ccc-chhhHHHHHHHHhHhhccCCcchhhHH
Q 013656 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND---RLD-KRTWTYIFGACCATTVFIPSFHNYRIW 200 (438)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~---~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~ 200 (438)
++.++.+..||+++.++..+...+..+|-..++....++.+..... +.+ ...+.+++.++.++..+. ..+.++.+
T Consensus 89 ~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~-G~~~i~~~ 167 (501)
T 2jln_A 89 NFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFY-GITFIRWM 167 (501)
T ss_dssp CHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 5888999999999999887777777777777776655554432211 222 344566667777776654 45666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC--CC-CCCCCcccHHHHHHHHHhH-HhhcccccchhhhhhcccCccc
Q 013656 201 SFLGLGMTTYTAWYLTIAAVVHGQV--EG-ASHTAPTKLVLYFTGATNI-LYTFGGHAVTVEIMHAMWKPQK 268 (438)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i~~~m~~p~~ 268 (438)
..+.........+++.+..+.+... .+ .+.........+..++... .+.-....+.++..+.+|++++
T Consensus 168 ~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 168 NVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 5555443332222233322222111 00 0111111112233333321 1211234678999999998887
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.79 E-value=0.56 Score=47.64 Aligned_cols=146 Identities=6% Similarity=-0.048 Sum_probs=69.0
Q ss_pred cCccHHHHHHHHHhhhhhh-hhchhhHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccccccccccc
Q 013656 48 HGGSAWDAWFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (438)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l~~~~~l~~-~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (438)
++.+.+-..+.+..+.+++ ..+++|-...+.|+....... . +.++. .....+. ..+++ .+..|
T Consensus 20 R~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~-~-~~~~~~i~~~~~~---p~~~~----------~~~~T 84 (530)
T 3dh4_A 20 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW-M-SAITLIIVGKYFL---PIFIE----------KGIYT 84 (530)
T ss_dssp SCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHH-H-HHHHHHHHHHHTH---HHHHH----------TTCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-H-HHHHHHHHHHHHH---HHHHH----------cCCcc
Confidence 3445565666666666654 567888888888875322111 1 11111 1111111 12221 12337
Q ss_pred HHHHHHhhcCCccchhhhhhhH-HHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHH
Q 013656 126 WFEVLDGLLGPYWKAVGLAFNC-TFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (438)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 204 (438)
..|..++-||++.+.+..++.. .+.+......+...+..++.. .+.+...-.++.+++....+..--++...+.-.+-
T Consensus 85 ~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~-~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 85 IPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI-LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8899988899887665433322 222222222222222222211 23455555566666667777777777777776655
Q ss_pred HHHHH
Q 013656 205 LGMTT 209 (438)
Q Consensus 205 ~~~~~ 209 (438)
.+..+
T Consensus 164 ~~im~ 168 (530)
T 3dh4_A 164 VFFLV 168 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.34 E-value=1.2 Score=45.95 Aligned_cols=142 Identities=7% Similarity=-0.048 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHhhhhhhh-hchhhHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 013656 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (438)
Q Consensus 50 ~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~-~t~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (438)
.+.+-..+.+..+.+++. .++.|-.-.+.|+....... .+.++. .....+. ..++ |. +..|..
T Consensus 51 l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~--~~~~~~~~~~~~~~---p~~~-r~---------~~~T~~ 115 (593)
T 2xq2_A 51 LPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW--MSAITLIIVGKYFL---PIFI-EK---------GIYTIP 115 (593)
T ss_dssp CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHH--HHHHHHHHHHHTHH---HHHH-HT---------TCCSHH
T ss_pred CCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHH--HHHHHHHHHHHHHH---HHHH-hC---------CCCCcH
Confidence 345555566665555544 46888777778864221111 011111 0111111 1222 11 233788
Q ss_pred HHHHhhcCCccchhhhhhhH-HHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHhHhhccCCcchhhHHHHHHHH
Q 013656 128 EVLDGLLGPYWKAVGLAFNC-TFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (438)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 206 (438)
|..++-||++.+.+..++.. .+.+.....++...+..++.. .+.+...-.++.++++...+..--++...+.-.+..+
T Consensus 116 e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~-~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 116 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI-LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888899877655433322 222222222222222222211 2344444455566666777777777776666555444
Q ss_pred H
Q 013656 207 M 207 (438)
Q Consensus 207 ~ 207 (438)
.
T Consensus 195 i 195 (593)
T 2xq2_A 195 F 195 (593)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=53.97 E-value=1.8e+02 Score=28.93 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=65.2
Q ss_pred cHHHHHHHHHhhhhhhhhchh----hHH-HHh------hc----hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 013656 51 SAWDAWFSCASNQVAQVLLTL----PYS-FSQ------MG----MLSGILLQIFYGFLGSWTAYLISV---LYVEYRSRK 112 (438)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~l----P~a-f~~------~G----~~~gii~l~~~~~l~~~t~~ll~~---~~~~~~~~~ 112 (438)
|.++=+..+.++-+|.|++.- |.. +.+ .| .-.+.-...+=+.+.-|+.|.+.. +|-.|+++.
T Consensus 92 s~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~y~r~~ 171 (509)
T 2wsw_A 92 STASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKM 171 (509)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445567788888887764 222 111 11 112233333444445556554332 343443222
Q ss_pred hhcccccccccccHHHHH-HhhcCCccchhhhhhhHHHHHHHHHH------HHHHhhcccccccccccchhhHHHHHHHH
Q 013656 113 EKENVSFKNHVIQWFEVL-DGLLGPYWKAVGLAFNCTFLLFGSVI------QLIACASNIYYINDRLDKRTWTYIFGACC 185 (438)
Q Consensus 113 ~~~~~~~~~~~~~y~~l~-~~~~G~~~~~~~~~~~~~~~~g~~~~------~li~~~~~~~~~~~~~~~~~~~~i~~~~~ 185 (438)
.+ .+.+.. =|+-++ ++.-|+.|+.+=....+..++|.++. |+...-+.+....++.....-++....++
T Consensus 172 ~p--l~iss~--l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vit~~ 247 (509)
T 2wsw_A 172 EV--IRPSST--LVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILL 247 (509)
T ss_dssp CC--CSGGGG--CHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred CC--cchHHH--hHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 21 122221 366677 67766665544333333445554432 33322222211222211112222222233
Q ss_pred hHhhccCCc-chhhHHHHHHHHH
Q 013656 186 ATTVFIPSF-HNYRIWSFLGLGM 207 (438)
Q Consensus 186 ~pl~~~~~l-~~l~~~s~~~~~~ 207 (438)
...+-..-+ |-.|++|-+.+..
T Consensus 248 ~~~Sa~sGl~kGIk~LS~~N~~l 270 (509)
T 2wsw_A 248 NAICVAFGLQKGVKIASDVRTYL 270 (509)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555 5566676555443
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=33.23 E-value=3.7e+02 Score=26.65 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHhhcc-cccchhhhhhcccCcccchhHHHHHHHHHHHH-----HHhhHhHHHHhhCcc
Q 013656 237 VLYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKYIYLFATLYVFTL-----TIPSATAVYWSFGDQ 298 (438)
Q Consensus 237 ~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~-----y~~~g~~gy~~fG~~ 298 (438)
.-...+.+-+.||.+ |.+.....-..+++.++..+........-+.. ..+++.+||.++|.+
T Consensus 242 ~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 242 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp HHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345788999999997 56677777777777777655443222222222 334455666666644
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=26.86 E-value=3.3e+02 Score=24.05 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHhhHhHHH-HhhCccccccccccccCCCch----H--HHHHHHHHHHHHHHhHhhhh-ccHH
Q 013656 267 QKFKYIYLFATLYVFTLTIPSATAVY-WSFGDQLLNHSNAFSLLPKNR----W--RDAAVILMLIHQFITFGFAC-TPLY 338 (438)
Q Consensus 267 ~~~~~~~~~s~~~~~~~y~~~g~~gy-~~fG~~~~~~~nil~~l~~~~----~--~~~~~~~~~i~~~~s~pl~~-~p~~ 338 (438)
++=+|...--.....+++.....+|| ..+.... +.+.++.++. . ..--.+-..+.++.++.+.. .|+.
T Consensus 94 ~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~----~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi 169 (249)
T 4b4a_A 94 SHEKRAFIPLLLGSILLFMLGALFAYFIVLPLAL----KFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIV 169 (249)
T ss_dssp CCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHH----HTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCCCCccchhhhhhhHHHHHHHHHHHHhcCcchhHHHHHhhHHHhHHHHhHHHHHHHHHhcccccccchhh
Q 013656 339 FVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQVKNC 416 (438)
Q Consensus 339 ~~~~~~~~~~~~~~~~~r~~~r~~~v~~~~~la~~ip~~~~i~~lvGa~~~~~l~~ilP~l~~~~~~~~~~~~~~~~~ 416 (438)
..+....+.-+ ....|-.-|.+++....+-|+..| |+++-+ .++.......-=++...+..++|++++.+.+
T Consensus 170 ~~~L~~~Giv~--~~~l~~~Rr~~iv~~~v~aAiiTP---D~~sq~-llaiPl~lLYEisi~i~~~~~~~~~~~~~~~ 241 (249)
T 4b4a_A 170 LYVLQKAGVIT--PEQLASFRKYFIVIAFVIGAIIAP---DVSTQV-LMAIPLLLLYEISIFLGKLATRKKKEIQKAP 241 (249)
T ss_dssp HHHHHHTTSSC--HHHHHHHHHHHHHHHHHHHHHHCS---SHHHHH-HHHHHHHHHHHHHHHTCCC------------
T ss_pred HHHHHHcCCcC--HHHHHHHhHHHHHHHHHHHHHHCC---cHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhhhcc
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=18.32 E-value=1.1e+02 Score=18.25 Aligned_cols=24 Identities=21% Similarity=0.539 Sum_probs=14.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013656 78 MGMLSGILLQIFYGFLGSWTAYLISVLYVEYR 109 (438)
Q Consensus 78 ~G~~~gii~l~~~~~l~~~t~~ll~~~~~~~~ 109 (438)
.|+++|.+-..+.|++ ..++.+|+
T Consensus 7 ~GIVlGlipvtlaGLf--------v~Ay~Qyr 30 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLF--------VTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHC
T ss_pred hhHHHhhHHHHHHHHH--------HHHHHHHh
Confidence 5777777777665554 34555665
Done!