Query 013656
Match_columns 438
No_of_seqs 153 out of 1231
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 14:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013656.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013656hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 49.5 95 0.0069 28.3 31.2 35 239-273 240-275 (509)
2 d2axti1 f.23.37.1 (I:1-35) Pho 16.8 39 0.0028 18.4 1.9 22 417-438 5-26 (35)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 15.0 67 0.0049 17.6 2.6 23 390-412 11-33 (36)
4 d1rh5b_ f.23.28.1 (B:) Preprot 9.0 1.4E+02 0.01 18.3 3.0 29 263-295 15-45 (56)
5 d1q90g_ f.23.26.1 (G:) PetG su 7.3 1.5E+02 0.011 15.2 2.2 16 78-93 7-22 (30)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 3.8 5.1E+02 0.037 17.0 4.2 20 318-337 67-86 (103)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 3.2 3.5E+02 0.025 13.2 2.0 6 82-87 3-8 (27)
8 d1q90r_ f.23.12.1 (R:) ISP sub 2.6 5.3E+02 0.038 14.2 3.0 18 384-401 18-35 (39)
9 d1v54d_ f.23.1.1 (D:) Mitochon 2.4 6.7E+02 0.049 18.1 3.5 40 258-297 63-103 (144)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 2.3 5.5E+02 0.04 13.7 2.3 17 77-93 14-30 (37)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=49.47 E-value=95 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHHHHHhHHhhcc-cccchhhhhhcccCcccchhHH
Q 013656 239 YFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKYIY 273 (438)
Q Consensus 239 ~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~ 273 (438)
...+.+-..|+.+ +++....+-..+++.++..+..
T Consensus 240 W~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda 275 (509)
T d2a65a1 240 WIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSG 275 (509)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHH
T ss_pred HHHHHHHHhhhhcccCCceeeehhhccchhhhcccc
Confidence 4678888899997 5677777777777766655543
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.81 E-value=39 Score=18.43 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=16.3
Q ss_pred hhhHHHHHHhhhhhhhhhhccC
Q 013656 417 SYFDMLMVFWSKKLFSFVFLFN 438 (438)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
+...+..|.+...+|.+=|+.|
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFLSn 26 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEehhhHHHHHHHHHHHhhccC
Confidence 4455667788888888888876
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.04 E-value=67 Score=17.57 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=15.5
Q ss_pred hHHHHhHHHHHHHHHhccccccc
Q 013656 390 SFTVYIIPSLAHMLTYRKASARQ 412 (438)
Q Consensus 390 ~~l~~ilP~l~~~~~~~~~~~~~ 412 (438)
+.+..+.|..|.+.++-+..+++
T Consensus 11 t~LFilvPt~FLliLyvqT~s~~ 33 (36)
T d2axtm1 11 TALFVLVPSVFLIILYVQTESQQ 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhheeecccc
Confidence 34556779998888876555443
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.99 E-value=1.4e+02 Score=18.27 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=13.9
Q ss_pred ccCccc--chhHHHHHHHHHHHHHHhhHhHHHHhh
Q 013656 263 MWKPQK--FKYIYLFATLYVFTLTIPSATAVYWSF 295 (438)
Q Consensus 263 m~~p~~--~~~~~~~s~~~~~~~y~~~g~~gy~~f 295 (438)
-++|++ |++...++- +-.++.|+.||..+
T Consensus 15 ~~KP~~~Ef~~ia~v~~----iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKVTA----LGISLLGIIGYIIH 45 (56)
T ss_dssp EECCCHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 355665 555543222 22345566666543
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.31 E-value=1.5e+02 Score=15.19 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=10.7
Q ss_pred hchHHHHHHHHHHHHH
Q 013656 78 MGMLSGILLQIFYGFL 93 (438)
Q Consensus 78 ~G~~~gii~l~~~~~l 93 (438)
.|+++|++-..+.|++
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 5777777776665554
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.85 E-value=5.1e+02 Score=17.01 Aligned_cols=20 Identities=0% Similarity=-0.213 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHhhhhccH
Q 013656 318 AVILMLIHQFITFGFACTPL 337 (438)
Q Consensus 318 ~~~~~~i~~~~s~pl~~~p~ 337 (438)
.|++..+.++....+...+.
T Consensus 67 gr~~~~~~~~~Gi~~~~~~~ 86 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSFGLVT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.17 E-value=3.5e+02 Score=13.23 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013656 82 SGILLQ 87 (438)
Q Consensus 82 ~gii~l 87 (438)
+|++..
T Consensus 3 lgli~~ 8 (27)
T d2e74g1 3 LGLVFA 8 (27)
T ss_dssp HHHHHH
T ss_pred eeehHH
Confidence 343333
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.62 E-value=5.3e+02 Score=14.19 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=11.5
Q ss_pred HhhHHHhHHHHhHHHHHH
Q 013656 384 VGALLVSFTVYIIPSLAH 401 (438)
Q Consensus 384 vGa~~~~~l~~ilP~l~~ 401 (438)
+|+++........|...|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 566666666666666555
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.42 E-value=6.7e+02 Score=18.11 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=20.8
Q ss_pred hhhhcccCccc-chhHHHHHHHHHHHHHHhhHhHHHHhhCc
Q 013656 258 EIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGD 297 (438)
Q Consensus 258 ~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 297 (438)
+-..+|+.|+. .+.++..+++.+.+-.+++...-..+|++
T Consensus 63 ~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 63 ESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp SCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567777765 45555444444444444444444445554
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.33 E-value=5.5e+02 Score=13.66 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHHHHH
Q 013656 77 QMGMLSGILLQIFYGFL 93 (438)
Q Consensus 77 ~~G~~~gii~l~~~~~l 93 (438)
+..+.+|++++.+.|++
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Done!