BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013658
         (438 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5JPF3|AN36C_HUMAN Ankyrin repeat domain-containing protein 36C OS=Homo sapiens
            GN=ANKRD36C PE=2 SV=3
          Length = 1778

 Score = 34.3 bits (77), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 39   KYRQVSSLRLERIQKHLQKINKPPVMTIESPDGDIIDCVHKRRQPALDHPLLKNHKIQRV 98
            K R+VSS +   ++    K N  P M  E+ D  I   V  ++QPAL     K   +  +
Sbjct: 949  KTRRVSSHKQPALKATSDKENSVPNMATETKDEQISGTVSSQKQPALKATSDKKDSVSNI 1008

Query: 99   PSQM 102
            P+++
Sbjct: 1009 PTEI 1012


>sp|Q96GX5|GWL_HUMAN Serine/threonine-protein kinase greatwall OS=Homo sapiens GN=MASTL
           PE=1 SV=1
          Length = 879

 Score = 32.3 bits (72), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 361 GEHTSTQ--MGSGHFAEDGFGKASYFRNLEIVDSDNSLSSVRDISILA-----ENTNCYN 413
           G H S Q  + SG  +E+  GK S  RN E+VDS      +++          E TNCY 
Sbjct: 419 GFHQSNQWAVDSGGISEEHLGKRSLKRNFELVDSSPCKKIIQNKKTCVEYKHNEMTNCYT 478

Query: 414 IKNS 417
            +N+
Sbjct: 479 NQNT 482


>sp|Q31TE9|YTFE_SHIBS Iron-sulfur cluster repair protein YtfE OS=Shigella boydii serotype
           4 (strain Sb227) GN=ytfE PE=3 SV=1
          Length = 220

 Score = 32.3 bits (72), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 14/136 (10%)

Query: 4   ALRNDKRGFRALFVPLFLAFFFVQNFALVSSLNYTKYRQVS--SLRLERIQKHLQKINKP 61
           A R+   G  AL +P   A F   N         T  R  +   L +E I+  L K+ + 
Sbjct: 2   AYRDQPLGELALSIPRASALFRKYNMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQ 61

Query: 62  PVMTI--ESPDGDIIDCV----HKRRQPALDHPLLKNHKIQRVPSQMPKMKKALKE---- 111
           P+      +P  +IID +    H R +  L   +L+  K++RV +  P + K L +    
Sbjct: 62  PIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTM 121

Query: 112 --DEASSERNNERVII 125
             +E SS    E  I+
Sbjct: 122 LHEELSSHMMKEEQIL 137


>sp|A1EA00|RPOC2_AGRST DNA-directed RNA polymerase subunit beta'' OS=Agrostis stolonifera
           GN=rpoC2 PE=3 SV=1
          Length = 1466

 Score = 32.0 bits (71), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 224 SQIWVLSGSFDGSDLNSIEAGW-QVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCAGFI 282
           S +W+LSG+   S + S      Q     YG     +F Y  SD   A G +NL+     
Sbjct: 477 SHLWILSGNICRSSIASFSLHKDQDQMNTYGKKDREIFDYSRSDRIMANGHWNLIYPSIF 536

Query: 283 QTNS 286
           Q NS
Sbjct: 537 QDNS 540


>sp|P06800|PTPRC_MOUSE Receptor-type tyrosine-protein phosphatase C OS=Mus musculus
           GN=Ptprc PE=1 SV=3
          Length = 1291

 Score = 32.0 bits (71), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 3   SALRNDKRGFRALFVPLFLAFF-FVQNFALVSSLNYTKY--RQVSSLRLERIQKHLQKIN 59
           S +RN+   F A  + +FL F   V + AL+  L Y  Y  R+  S  L+  Q+ +++ +
Sbjct: 552 SVIRNESTNFNAKALIIFLVFLIIVTSIALLVVL-YKIYDLRKKRSSNLDEQQELVERDD 610

Query: 60  KPPVMTIESPDGDIIDCVHKRR 81
           +  +M +E    DI+   +KR+
Sbjct: 611 EKQLMDVEPIHSDILLETYKRK 632


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,531,526
Number of Sequences: 539616
Number of extensions: 7528423
Number of successful extensions: 16775
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16767
Number of HSP's gapped (non-prelim): 18
length of query: 438
length of database: 191,569,459
effective HSP length: 120
effective length of query: 318
effective length of database: 126,815,539
effective search space: 40327341402
effective search space used: 40327341402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)