Query 013659
Match_columns 438
No_of_seqs 364 out of 2829
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 9.1E-29 3.1E-33 255.0 29.0 243 21-281 300-568 (679)
2 2ond_A Cleavage stimulation fa 99.9 1.3E-23 4.3E-28 198.4 29.9 240 20-280 5-267 (308)
3 2uy1_A Cleavage stimulation fa 99.9 2.3E-24 7.8E-29 216.1 25.5 247 4-284 156-414 (493)
4 4e6h_A MRNA 3'-END-processing 99.9 1E-23 3.6E-28 217.4 28.4 272 4-283 51-407 (679)
5 2ooe_A Cleavage stimulation fa 99.9 8.3E-22 2.8E-26 200.0 29.9 242 22-284 229-493 (530)
6 2ooe_A Cleavage stimulation fa 99.9 7.2E-21 2.5E-25 193.1 27.8 271 3-281 30-383 (530)
7 2uy1_A Cleavage stimulation fa 99.9 1.8E-20 6.1E-25 187.8 24.5 215 2-246 12-242 (493)
8 2ond_A Cleavage stimulation fa 99.8 3.3E-19 1.1E-23 168.0 24.9 217 3-246 34-270 (308)
9 4eqf_A PEX5-related protein; a 99.6 4.1E-13 1.4E-17 128.7 21.5 101 23-125 65-165 (365)
10 1w3b_A UDP-N-acetylglucosamine 99.5 2.7E-12 9.2E-17 124.1 27.3 264 3-277 51-328 (388)
11 3hym_B Cell division cycle pro 99.5 5.2E-12 1.8E-16 118.5 28.0 263 3-274 40-325 (330)
12 1w3b_A UDP-N-acetylglucosamine 99.5 8E-12 2.7E-16 120.8 28.3 262 3-274 85-359 (388)
13 4h7y_A Dual specificity protei 99.5 1.3E-13 4.6E-18 110.4 12.6 60 184-245 63-122 (161)
14 3hym_B Cell division cycle pro 99.5 5.3E-12 1.8E-16 118.4 25.8 104 22-126 21-124 (330)
15 1fch_A Peroxisomal targeting s 99.5 5.3E-12 1.8E-16 120.7 24.8 269 7-279 48-355 (368)
16 3ieg_A DNAJ homolog subfamily 99.5 1.6E-11 5.5E-16 116.3 27.6 214 4-245 22-262 (359)
17 2y4t_A DNAJ homolog subfamily 99.5 5.1E-11 1.7E-15 117.2 29.9 224 7-246 14-240 (450)
18 2y4t_A DNAJ homolog subfamily 99.5 3.9E-11 1.3E-15 118.0 29.1 121 3-128 44-178 (450)
19 2pl2_A Hypothetical conserved 99.5 9.1E-12 3.1E-16 110.6 21.8 199 22-245 4-213 (217)
20 4eqf_A PEX5-related protein; a 99.5 1E-11 3.6E-16 118.8 23.4 228 45-279 49-306 (365)
21 3cv0_A Peroxisome targeting si 99.5 1.1E-11 3.8E-16 116.1 22.4 218 25-245 23-268 (327)
22 2xpi_A Anaphase-promoting comp 99.4 5.4E-11 1.9E-15 121.5 28.8 245 22-273 304-569 (597)
23 2xpi_A Anaphase-promoting comp 99.4 4.2E-11 1.4E-15 122.3 27.7 250 26-280 275-542 (597)
24 3ieg_A DNAJ homolog subfamily 99.4 2.3E-10 7.8E-15 108.3 30.1 213 22-246 2-217 (359)
25 1fch_A Peroxisomal targeting s 99.4 4.8E-11 1.6E-15 113.9 24.5 237 36-279 38-310 (368)
26 4h7y_A Dual specificity protei 99.4 1.3E-12 4.6E-17 104.6 11.1 103 20-125 10-126 (161)
27 4fxv_A ELAV-like protein 1; RN 99.4 2.4E-13 8.2E-18 104.7 6.3 51 388-438 16-66 (99)
28 2ho1_A Type 4 fimbrial biogene 99.4 2E-10 6.9E-15 103.6 25.6 204 19-246 32-238 (252)
29 3uq3_A Heat shock protein STI1 99.4 6.9E-10 2.4E-14 99.9 28.1 224 21-280 3-233 (258)
30 2h6f_A Protein farnesyltransfe 99.4 8.4E-11 2.9E-15 113.6 22.9 203 19-243 93-302 (382)
31 2vq2_A PILW, putative fimbrial 99.4 5E-10 1.7E-14 98.6 25.6 202 20-245 5-210 (225)
32 3cv0_A Peroxisome targeting si 99.4 4.7E-10 1.6E-14 104.8 26.5 217 57-280 21-266 (327)
33 2q7f_A YRRB protein; TPR, prot 99.3 5.3E-11 1.8E-15 106.5 18.7 213 25-264 25-237 (243)
34 3vtx_A MAMA; tetratricopeptide 99.3 2.9E-10 1E-14 97.5 22.4 167 21-245 3-169 (184)
35 2h6f_A Protein farnesyltransfe 99.3 2.2E-10 7.5E-15 110.6 23.6 220 3-245 115-347 (382)
36 1xnf_A Lipoprotein NLPI; TPR, 99.3 4.9E-10 1.7E-14 102.1 24.8 218 3-246 23-244 (275)
37 2lkz_A RNA-binding protein 5; 99.3 6.5E-13 2.2E-17 101.1 4.2 47 392-438 10-58 (95)
38 3s8s_A Histone-lysine N-methyl 99.3 2E-12 7E-17 101.5 6.7 49 390-438 5-53 (110)
39 3s7r_A Heterogeneous nuclear r 99.3 2.7E-12 9.3E-17 96.4 6.7 50 389-438 9-58 (87)
40 1s79_A Lupus LA protein; RRM, 99.3 2.2E-12 7.4E-17 100.0 6.1 49 389-438 9-57 (103)
41 2lxi_A RNA-binding protein 10; 99.3 5.1E-13 1.7E-17 101.2 2.4 47 392-438 2-49 (91)
42 3fp2_A TPR repeat-containing p 99.3 2.4E-09 8.1E-14 107.6 29.7 268 3-280 43-404 (537)
43 2q7f_A YRRB protein; TPR, prot 99.3 3.2E-10 1.1E-14 101.3 20.3 201 3-231 41-241 (243)
44 2j8a_A Histone-lysine N-methyl 99.3 2.7E-12 9.2E-17 100.6 4.9 47 392-438 3-53 (136)
45 2rs2_A Musashi-1, RNA-binding 99.3 4.2E-12 1.4E-16 99.7 6.1 51 388-438 22-72 (109)
46 2m2b_A RNA-binding protein 10; 99.3 4.9E-12 1.7E-16 102.9 6.2 50 389-438 21-72 (131)
47 2khc_A Testis-specific RNP-typ 99.3 1.9E-11 6.4E-16 97.5 9.5 52 387-438 36-87 (118)
48 1x4e_A RNA binding motif, sing 99.2 8.7E-12 3E-16 93.1 6.3 50 389-438 3-52 (85)
49 3u4t_A TPR repeat-containing p 99.2 8E-10 2.8E-14 100.7 20.6 199 23-246 3-208 (272)
50 2cqg_A TDP-43, TAR DNA-binding 99.2 1.2E-11 4E-16 96.1 6.9 50 389-438 13-62 (103)
51 3u4t_A TPR repeat-containing p 99.2 1.3E-09 4.4E-14 99.3 21.8 225 3-260 21-261 (272)
52 2gw1_A Mitochondrial precursor 99.2 3E-09 1E-13 106.0 26.4 249 3-279 207-474 (514)
53 3p5t_L Cleavage and polyadenyl 99.2 4.1E-12 1.4E-16 96.1 4.1 47 392-438 2-50 (90)
54 3ns6_A Eukaryotic translation 99.2 2.4E-12 8.1E-17 99.4 2.8 49 390-438 5-59 (100)
55 4abn_A Tetratricopeptide repea 99.2 1.1E-09 3.9E-14 109.0 22.9 104 22-128 101-214 (474)
56 2jrs_A RNA-binding protein 39; 99.2 1.3E-11 4.3E-16 96.7 6.9 53 386-438 21-73 (108)
57 2cq4_A RNA binding motif prote 99.2 1.1E-11 3.7E-16 98.3 6.6 50 389-438 23-72 (114)
58 1uaw_A Mouse-musashi-1; RNP-ty 99.2 5.9E-12 2E-16 92.1 4.6 47 392-438 1-47 (77)
59 2dgs_A DAZ-associated protein 99.2 2.4E-11 8.1E-16 93.6 7.8 50 389-438 8-57 (99)
60 2la6_A RNA-binding protein FUS 99.2 1.9E-11 6.6E-16 94.1 7.1 50 389-438 11-68 (99)
61 1x4b_A Heterogeneous nuclear r 99.2 1.2E-11 4E-16 98.4 5.8 50 389-438 25-74 (116)
62 2dgp_A Bruno-like 4, RNA bindi 99.2 1.1E-11 3.7E-16 96.8 5.5 50 389-438 11-60 (106)
63 1x4h_A RNA-binding protein 28; 99.2 2.4E-11 8.2E-16 95.7 7.4 50 389-438 13-62 (111)
64 3fp2_A TPR repeat-containing p 99.2 4.3E-09 1.5E-13 105.7 26.0 221 3-246 261-491 (537)
65 2dnh_A Bruno-like 5, RNA bindi 99.2 2.9E-11 1E-15 94.2 7.7 49 389-438 13-61 (105)
66 2pl2_A Hypothetical conserved 99.2 3.6E-09 1.2E-13 93.6 22.3 200 53-269 1-200 (217)
67 4gyw_A UDP-N-acetylglucosamine 99.2 1.1E-09 3.6E-14 114.3 21.7 170 18-245 4-173 (723)
68 3md1_A Nuclear and cytoplasmic 99.2 1.7E-11 5.8E-16 91.1 5.9 47 392-438 2-48 (83)
69 1x5u_A Splicing factor 3B subu 99.2 2.8E-11 9.6E-16 94.3 7.4 50 389-438 13-62 (105)
70 1p27_B RNA-binding protein 8A; 99.2 1.9E-11 6.3E-16 95.5 6.0 50 389-438 21-70 (106)
71 2dnm_A SRP46 splicing factor; 99.2 3.3E-11 1.1E-15 93.5 7.4 50 389-438 11-60 (103)
72 3uq3_A Heat shock protein STI1 99.2 2.1E-09 7.3E-14 96.6 20.6 207 3-246 23-236 (258)
73 3bs9_A Nucleolysin TIA-1 isofo 99.2 1.7E-11 5.8E-16 91.9 5.5 50 389-438 4-53 (87)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.2 1.7E-11 5.9E-16 91.5 5.5 50 389-438 5-54 (85)
75 1wg5_A Heterogeneous nuclear r 99.2 3.4E-11 1.2E-15 93.6 7.3 49 389-438 13-62 (104)
76 2dnz_A Probable RNA-binding pr 99.2 3.6E-11 1.2E-15 91.8 7.3 49 390-438 4-52 (95)
77 2dh8_A DAZ-associated protein 99.2 2.7E-11 9.2E-16 94.4 6.6 50 389-438 14-63 (105)
78 2cqd_A RNA-binding region cont 99.2 4.9E-11 1.7E-15 94.7 8.3 51 388-438 14-64 (116)
79 2cpz_A CUG triplet repeat RNA- 99.2 3.2E-11 1.1E-15 95.6 7.2 50 389-438 23-72 (115)
80 1whw_A Hypothetical protein ri 99.2 3E-11 1E-15 93.0 6.7 50 389-438 6-55 (99)
81 2e5h_A Zinc finger CCHC-type a 99.2 4.7E-11 1.6E-15 91.0 7.7 50 389-438 14-63 (94)
82 2cq0_A Eukaryotic translation 99.2 2.9E-11 9.8E-16 93.9 6.6 50 389-438 13-62 (103)
83 2div_A TRNA selenocysteine ass 99.2 2.3E-11 8E-16 93.6 6.0 50 389-438 7-57 (99)
84 2mss_A Protein (musashi1); RNA 99.2 1.4E-11 4.6E-16 89.7 4.4 46 393-438 1-46 (75)
85 1oo0_B CG8781-PA, drosophila Y 99.2 2.3E-11 7.9E-16 95.6 6.0 50 389-438 24-73 (110)
86 3n9u_C Cleavage and polyadenyl 99.2 1.6E-11 5.6E-16 102.6 5.4 50 389-438 53-104 (156)
87 2cpy_A RNA-binding protein 12; 99.2 2.8E-11 9.5E-16 95.8 6.4 49 389-438 13-62 (114)
88 2do4_A Squamous cell carcinoma 99.2 4.9E-11 1.7E-15 92.0 7.6 49 389-438 15-63 (100)
89 3mkr_A Coatomer subunit epsilo 99.2 1.4E-08 4.7E-13 94.3 25.6 219 6-253 48-269 (291)
90 2dgo_A Cytotoxic granule-assoc 99.2 4.1E-11 1.4E-15 95.0 7.2 50 389-438 13-62 (115)
91 2gw1_A Mitochondrial precursor 99.2 2.6E-09 9E-14 106.5 22.2 221 3-246 255-478 (514)
92 2cph_A RNA binding motif prote 99.2 4.5E-11 1.5E-15 93.5 7.2 50 389-438 13-63 (107)
93 4g1t_A Interferon-induced prot 99.2 1.2E-08 4E-13 100.9 26.5 236 3-246 156-401 (472)
94 2x1f_A MRNA 3'-END-processing 99.2 3.2E-11 1.1E-15 92.3 6.1 48 391-438 2-49 (96)
95 2dng_A Eukaryotic translation 99.2 5.2E-11 1.8E-15 92.4 7.3 49 389-438 13-61 (103)
96 2cqc_A Arginine/serine-rich sp 99.2 3.9E-11 1.3E-15 91.6 6.6 50 389-438 13-62 (95)
97 2ho1_A Type 4 fimbrial biogene 99.2 8.7E-09 3E-13 92.7 23.1 190 3-220 55-246 (252)
98 3ucg_A Polyadenylate-binding p 99.2 3.7E-11 1.3E-15 90.5 6.1 48 391-438 6-53 (89)
99 1wez_A HnRNP H', FTP-3, hetero 99.2 3.5E-11 1.2E-15 93.1 6.0 48 389-438 13-60 (102)
100 1iqt_A AUF1, heterogeneous nuc 99.2 1.1E-11 3.7E-16 90.2 3.0 46 393-438 1-46 (75)
101 2xs2_A Deleted in azoospermia- 99.2 1.9E-11 6.4E-16 94.7 4.5 49 389-438 7-55 (102)
102 2kxn_B Transformer-2 protein h 99.2 5.6E-11 1.9E-15 96.1 7.1 50 389-438 44-93 (129)
103 1x5t_A Splicing factor 3B subu 99.1 2.9E-11 9.9E-16 92.5 5.2 50 389-438 3-53 (96)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.1 1.9E-11 6.6E-16 94.3 4.2 49 389-438 17-66 (100)
105 3d2w_A TAR DNA-binding protein 99.1 3.7E-11 1.3E-15 90.4 5.5 45 389-438 9-53 (89)
106 1wi8_A EIF-4B, eukaryotic tran 99.1 7E-11 2.4E-15 91.8 7.2 48 390-438 14-62 (104)
107 2dhg_A TRNA selenocysteine ass 99.1 4.7E-11 1.6E-15 92.8 6.2 49 389-438 7-56 (104)
108 4f25_A Polyadenylate-binding p 99.1 2.5E-11 8.6E-16 96.2 4.7 46 391-438 5-50 (115)
109 2cqb_A Peptidyl-prolyl CIS-tra 99.1 4.5E-11 1.5E-15 92.6 6.0 50 389-438 10-59 (102)
110 1x5o_A RNA binding motif, sing 99.1 8.9E-11 3.1E-15 92.9 7.7 50 388-438 22-71 (114)
111 1x5s_A Cold-inducible RNA-bind 99.1 5.7E-11 2E-15 92.0 6.0 50 389-438 10-59 (102)
112 2dnn_A RNA-binding protein 12; 99.1 4.7E-11 1.6E-15 93.2 5.5 48 389-438 14-61 (109)
113 2cpe_A RNA-binding protein EWS 99.1 8.4E-11 2.9E-15 92.9 6.9 50 389-438 13-70 (113)
114 2dnl_A Cytoplasmic polyadenyla 99.1 5.7E-11 1.9E-15 94.0 5.7 49 389-438 6-57 (114)
115 2krb_A Eukaryotic translation 99.1 4.4E-11 1.5E-15 88.3 4.7 45 392-438 2-52 (81)
116 2lmi_A GRSF-1, G-rich sequence 99.1 4E-11 1.4E-15 93.7 4.7 49 389-438 9-60 (107)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 1.5E-10 5.2E-15 95.1 8.4 50 389-438 61-110 (140)
118 2nlw_A Eukaryotic translation 99.1 7E-11 2.4E-15 92.0 5.8 48 389-438 13-66 (105)
119 2hgl_A HNRPF protein, heteroge 99.1 4.9E-11 1.7E-15 97.0 5.1 49 389-438 42-93 (136)
120 2cpf_A RNA binding motif prote 99.1 4.3E-11 1.5E-15 92.0 4.5 50 389-438 3-55 (98)
121 2fy1_A RNA-binding motif prote 99.1 9E-11 3.1E-15 93.1 6.4 49 389-438 5-53 (116)
122 2db1_A Heterogeneous nuclear r 99.1 6.7E-11 2.3E-15 94.1 5.6 49 389-438 15-66 (118)
123 3ex7_B RNA-binding protein 8A; 99.1 8.7E-11 3E-15 94.8 6.4 50 389-438 20-69 (126)
124 2hgm_A HNRPF protein, heteroge 99.1 1.1E-10 3.9E-15 93.3 6.7 48 389-438 40-89 (126)
125 4f02_A Polyadenylate-binding p 99.1 6.1E-11 2.1E-15 105.0 5.7 48 391-438 15-62 (213)
126 2ywk_A Putative RNA-binding pr 99.1 7.9E-11 2.7E-15 89.9 5.6 49 389-438 14-62 (95)
127 2vq2_A PILW, putative fimbrial 99.1 3E-08 1E-12 87.0 23.3 201 52-277 3-205 (225)
128 2d9p_A Polyadenylate-binding p 99.1 1.3E-10 4.6E-15 90.1 6.9 48 389-438 13-60 (103)
129 1p1t_A Cleavage stimulation fa 99.1 2.4E-11 8.1E-16 94.5 2.5 49 390-438 7-55 (104)
130 3ulh_A THO complex subunit 4; 99.1 1.1E-10 3.8E-15 91.2 6.3 49 389-438 27-75 (107)
131 2ki2_A SS-DNA binding protein 99.1 1.9E-11 6.5E-16 92.3 1.7 47 392-438 2-48 (90)
132 1sjq_A Polypyrimidine tract-bi 99.1 7.1E-11 2.4E-15 90.8 5.0 44 389-438 14-57 (105)
133 1wel_A RNA-binding protein 12; 99.1 7.8E-11 2.7E-15 94.7 5.5 50 389-438 23-72 (124)
134 1u6f_A Tcubp1, RNA-binding pro 99.1 9.3E-11 3.2E-15 96.3 5.9 50 389-438 40-89 (139)
135 2dis_A Unnamed protein product 99.1 7.9E-11 2.7E-15 92.4 5.2 50 389-438 6-57 (109)
136 2dha_A FLJ20171 protein; RRM d 99.1 6.3E-11 2.2E-15 94.5 4.5 49 389-438 21-73 (123)
137 3q2s_C Cleavage and polyadenyl 99.1 8.9E-11 3E-15 104.8 5.8 50 389-438 66-117 (229)
138 2cqp_A RNA-binding protein 12; 99.1 7E-11 2.4E-15 90.7 4.2 50 389-438 13-62 (98)
139 4a8x_A RNA-binding protein wit 99.1 8E-11 2.8E-15 88.4 4.5 49 390-438 3-52 (88)
140 2err_A Ataxin-2-binding protei 99.1 1.5E-10 5E-15 90.8 6.0 48 389-438 27-74 (109)
141 4abn_A Tetratricopeptide repea 99.1 2.4E-08 8.3E-13 99.4 23.6 197 39-253 84-292 (474)
142 3as5_A MAMA; tetratricopeptide 99.1 2.5E-08 8.7E-13 84.4 20.6 167 22-246 7-173 (186)
143 2kt5_A RNA and export factor-b 99.1 2.3E-10 7.7E-15 92.0 7.1 50 388-438 32-81 (124)
144 1rk8_A CG8781-PA, CG8781-PA pr 99.1 1.4E-10 4.7E-15 98.3 6.1 50 389-438 70-119 (165)
145 2dgv_A HnRNP M, heterogeneous 99.1 2E-10 6.7E-15 87.1 6.2 48 389-438 6-53 (92)
146 2kn4_A Immunoglobulin G-bindin 99.1 1.6E-10 5.6E-15 97.1 6.1 50 389-438 68-117 (158)
147 2jwn_A Embryonic polyadenylate 99.1 1.1E-10 3.8E-15 93.8 4.8 49 390-438 35-83 (124)
148 2cq1_A PTB-like protein L; RRM 99.0 3.4E-10 1.2E-14 87.0 7.2 44 389-438 13-56 (101)
149 2do0_A HnRNP M, heterogeneous 99.0 3.7E-10 1.3E-14 89.3 7.2 49 389-438 13-61 (114)
150 2dgw_A Probable RNA-binding pr 99.0 3.5E-10 1.2E-14 85.5 6.7 48 389-438 8-55 (91)
151 2hgn_A Heterogeneous nuclear r 99.0 1.3E-10 4.4E-15 94.8 4.4 48 389-438 44-91 (139)
152 1h2v_Z 20 kDa nuclear CAP bind 99.0 2.7E-10 9.2E-15 95.5 6.5 50 389-438 37-86 (156)
153 2lea_A Serine/arginine-rich sp 99.0 1.1E-10 3.7E-15 95.3 3.9 50 389-438 45-94 (135)
154 4i17_A Hypothetical protein; T 99.0 6.7E-08 2.3E-12 85.7 22.5 197 22-245 6-208 (228)
155 3vtx_A MAMA; tetratricopeptide 99.0 2.3E-08 7.9E-13 85.4 18.7 156 3-220 23-178 (184)
156 2ek1_A RNA-binding protein 12; 99.0 8.4E-11 2.9E-15 89.7 2.9 48 391-438 15-62 (95)
157 1l3k_A Heterogeneous nuclear r 99.0 1.9E-10 6.6E-15 100.2 5.5 50 389-438 11-60 (196)
158 3ro2_A PINS homolog, G-protein 99.0 3.5E-08 1.2E-12 91.8 21.5 123 156-280 198-329 (338)
159 2cq3_A RNA-binding protein 9; 99.0 7.6E-10 2.6E-14 85.7 8.3 48 389-438 13-60 (103)
160 4a1s_A PINS, partner of inscut 99.0 2.6E-08 8.9E-13 96.5 21.1 261 22-286 47-375 (411)
161 1wf0_A TDP-43, TAR DNA-binding 99.0 2.5E-10 8.7E-15 85.7 5.0 44 390-438 4-47 (88)
162 2ad9_A Polypyrimidine tract-bi 99.0 4.9E-10 1.7E-14 88.4 6.5 43 390-438 30-72 (119)
163 1xnf_A Lipoprotein NLPI; TPR, 99.0 2.8E-08 9.5E-13 90.3 19.3 205 3-240 61-269 (275)
164 2cqi_A Nucleolysin TIAR; RNA r 99.0 6.2E-10 2.1E-14 86.2 6.9 48 389-438 13-60 (103)
165 3r27_A HnRNP L, heterogeneous 99.0 6.1E-10 2.1E-14 84.7 6.3 43 390-438 20-62 (100)
166 3sf4_A G-protein-signaling mod 99.0 5.8E-08 2E-12 93.4 22.0 126 155-282 201-335 (406)
167 2dgx_A KIAA0430 protein; RRM d 99.0 4.5E-10 1.5E-14 85.8 5.5 47 389-438 7-57 (96)
168 3nf1_A KLC 1, kinesin light ch 99.0 1.1E-07 3.7E-12 87.9 22.4 180 19-212 23-224 (311)
169 1wex_A Hypothetical protein (r 99.0 1.3E-09 4.3E-14 84.3 7.6 43 390-438 14-56 (104)
170 4a1s_A PINS, partner of inscut 99.0 1.6E-07 5.3E-12 90.9 24.3 210 71-282 61-331 (411)
171 1x4a_A Splicing factor, argini 99.0 2E-09 6.7E-14 84.3 8.6 47 389-438 20-66 (109)
172 1x4d_A Matrin 3; structural ge 98.9 7.9E-10 2.7E-14 84.9 5.5 43 390-438 14-57 (102)
173 1fj7_A Nucleolin RBD1, protein 98.9 9.9E-11 3.4E-15 90.4 0.2 49 389-438 15-63 (101)
174 2cpi_A CCR4-NOT transcription 98.9 8E-10 2.7E-14 86.9 5.4 50 389-438 13-68 (111)
175 2lcw_A RNA-binding protein FUS 98.5 9.8E-11 3.4E-15 92.9 0.0 50 389-438 5-62 (116)
176 1x4f_A Matrin 3; structural ge 98.9 1.4E-09 4.9E-14 84.7 6.4 43 390-438 24-67 (112)
177 3dra_A Protein farnesyltransfe 98.9 1.4E-07 4.7E-12 87.8 20.6 202 22-245 31-249 (306)
178 2f3j_A RNA and export factor b 98.9 1.2E-09 4.2E-14 93.3 6.0 50 388-438 85-134 (177)
179 3ro2_A PINS homolog, G-protein 98.9 4.2E-07 1.4E-11 84.4 24.1 254 23-281 5-290 (338)
180 2fc9_A NCL protein; structure 98.9 2E-09 6.9E-14 82.9 6.7 46 389-438 13-58 (101)
181 2a3j_A U1 small nuclear ribonu 98.9 1.3E-09 4.4E-14 87.5 5.7 46 390-438 28-77 (127)
182 4i17_A Hypothetical protein; T 98.9 4.2E-07 1.4E-11 80.4 22.8 189 3-226 25-223 (228)
183 2cpx_A Hypothetical protein FL 98.9 4.4E-10 1.5E-14 89.0 2.4 50 389-438 23-72 (115)
184 2wbr_A GW182, gawky, LD47780P; 98.9 1.3E-09 4.5E-14 79.9 4.7 42 391-438 7-48 (89)
185 2voo_A Lupus LA protein; RNA-b 98.9 1.7E-09 5.8E-14 93.8 5.9 47 391-438 109-155 (193)
186 4g1t_A Interferon-induced prot 98.9 6.8E-07 2.3E-11 88.1 25.4 127 3-129 69-211 (472)
187 3sf4_A G-protein-signaling mod 98.9 5E-07 1.7E-11 86.8 23.5 254 22-280 8-293 (406)
188 2jvo_A Nucleolar protein 3; nu 98.9 2.6E-09 8.8E-14 83.4 5.7 43 388-438 28-70 (108)
189 3pgw_S U1-70K; protein-RNA com 98.9 2.5E-09 8.6E-14 104.5 6.8 49 390-438 101-149 (437)
190 2ytc_A PRE-mRNA-splicing facto 98.8 4.4E-09 1.5E-13 78.2 6.5 44 389-438 10-53 (85)
191 3lqv_A PRE-mRNA branch site pr 98.8 4E-09 1.4E-13 83.4 6.6 46 390-438 7-52 (115)
192 2e5j_A Methenyltetrahydrofolat 98.8 4.2E-09 1.4E-13 80.5 6.4 45 389-438 17-61 (97)
193 2la4_A Nuclear and cytoplasmic 98.8 3.7E-09 1.3E-13 81.5 6.1 43 390-438 26-68 (101)
194 2cpj_A Non-POU domain-containi 98.8 5.6E-09 1.9E-13 80.1 7.1 44 389-438 13-56 (99)
195 3qky_A Outer membrane assembly 98.8 1.1E-06 3.8E-11 79.5 23.6 186 21-246 13-224 (261)
196 2r5s_A Uncharacterized protein 98.8 2.5E-08 8.4E-13 85.0 11.5 165 24-246 7-173 (176)
197 3md3_A Nuclear and cytoplasmic 98.8 5.9E-09 2E-13 87.9 7.5 50 389-438 85-134 (166)
198 2fc8_A NCL protein; structure 98.8 4.9E-09 1.7E-13 80.9 6.1 47 389-438 13-59 (102)
199 1l3k_A Heterogeneous nuclear r 98.8 4.4E-09 1.5E-13 91.5 6.3 49 390-438 103-151 (196)
200 2xnq_A Nuclear polyadenylated 98.8 5.1E-09 1.7E-13 80.0 5.9 42 389-438 20-62 (97)
201 2jvr_A Nucleolar protein 3; RN 98.8 2.2E-09 7.6E-14 83.8 3.8 46 389-438 26-72 (111)
202 1x4c_A Splicing factor, argini 98.8 8.4E-09 2.9E-13 80.5 7.0 43 389-438 13-55 (108)
203 1nu4_A U1A RNA binding domain; 98.8 1.3E-09 4.3E-14 83.4 2.2 46 390-438 7-56 (97)
204 2qfj_A FBP-interacting repress 98.8 4.3E-09 1.5E-13 93.1 5.9 48 391-438 28-75 (216)
205 2g4b_A Splicing factor U2AF 65 98.8 6.7E-09 2.3E-13 88.3 6.8 49 390-438 93-141 (172)
206 2hvz_A Splicing factor, argini 98.8 3.2E-09 1.1E-13 81.8 4.1 42 392-438 1-42 (101)
207 1ouv_A Conserved hypothetical 98.8 6.3E-06 2.2E-10 74.9 27.0 199 20-246 3-215 (273)
208 2i2y_A Fusion protein consists 98.8 5.5E-09 1.9E-13 86.8 5.6 45 389-438 71-115 (150)
209 3dra_A Protein farnesyltransfe 98.8 1.6E-06 5.5E-11 80.5 22.6 221 3-245 51-286 (306)
210 3edt_B KLC 2, kinesin light ch 98.8 5.4E-07 1.9E-11 81.6 19.3 165 34-212 12-198 (283)
211 2cjk_A Nuclear polyadenylated 98.8 3.3E-09 1.1E-13 89.7 4.0 48 391-438 87-134 (167)
212 2dnq_A RNA-binding protein 4B; 98.8 9.5E-09 3.2E-13 77.3 6.1 42 389-438 6-47 (90)
213 1fjc_A Nucleolin RBD2, protein 98.8 2.1E-09 7.2E-14 82.0 2.4 45 389-438 14-58 (96)
214 2yh0_A Splicing factor U2AF 65 98.8 1.5E-08 5E-13 88.3 8.0 50 389-438 112-161 (198)
215 1why_A Hypothetical protein ri 98.8 1.4E-08 4.8E-13 77.5 6.9 43 390-438 16-58 (97)
216 3urz_A Uncharacterized protein 98.8 1E-06 3.5E-11 77.1 20.0 171 23-216 4-190 (208)
217 1whx_A Hypothetical protein ri 98.7 4.4E-09 1.5E-13 82.5 3.7 43 390-438 9-51 (111)
218 2pzi_A Probable serine/threoni 98.7 1.5E-07 5.2E-12 97.9 15.9 174 34-232 402-583 (681)
219 3qou_A Protein YBBN; thioredox 98.7 3.6E-07 1.2E-11 84.4 16.8 168 54-245 114-283 (287)
220 1x4g_A Nucleolysin TIAR; struc 98.7 8.6E-09 2.9E-13 80.6 4.9 43 390-438 24-66 (109)
221 1b7f_A Protein (SXL-lethal pro 98.7 1.8E-08 6E-13 85.2 7.0 49 390-438 88-136 (168)
222 3egn_A RNA-binding protein 40; 98.7 1.6E-09 5.6E-14 89.3 0.4 50 389-438 43-97 (143)
223 1ouv_A Conserved hypothetical 98.7 1.2E-05 4E-10 73.1 26.4 210 3-246 24-251 (273)
224 4gyw_A UDP-N-acetylglucosamine 98.7 3.8E-07 1.3E-11 95.0 18.1 121 3-129 27-147 (723)
225 2e5g_A U6 snRNA-specific termi 98.7 2.6E-08 8.9E-13 75.5 6.9 44 390-438 7-50 (94)
226 1wf1_A RNA-binding protein RAL 98.7 2E-08 6.8E-13 78.6 6.3 42 389-438 25-67 (110)
227 2qfj_A FBP-interacting repress 98.7 1.6E-08 5.4E-13 89.4 6.4 48 391-438 125-172 (216)
228 3nmr_A Cugbp ELAV-like family 98.7 1.3E-08 4.3E-13 86.7 5.5 48 390-438 94-141 (175)
229 3as5_A MAMA; tetratricopeptide 98.7 8.3E-07 2.8E-11 74.9 17.0 150 4-215 27-176 (186)
230 4ga2_A E3 SUMO-protein ligase 98.7 2E-07 6.9E-12 77.1 12.7 127 1-128 6-135 (150)
231 4gco_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 71.3 15.4 109 18-128 8-116 (126)
232 2kvi_A Nuclear polyadenylated 98.7 1.7E-08 5.8E-13 76.9 5.4 42 389-438 8-50 (96)
233 1fxl_A Paraneoplastic encephal 98.7 1.6E-08 5.6E-13 85.3 5.7 49 390-438 87-135 (167)
234 1wg1_A KIAA1579 protein, homol 98.7 1.4E-08 4.9E-13 75.9 4.7 43 389-438 3-45 (88)
235 2dgt_A RNA-binding protein 30; 98.7 2.5E-08 8.6E-13 75.3 6.1 42 389-438 8-49 (92)
236 3mkr_A Coatomer subunit epsilo 98.7 9.5E-06 3.3E-10 75.0 24.7 187 4-220 84-272 (291)
237 3q7a_A Farnesyltransferase alp 98.7 1.1E-05 3.8E-10 75.9 24.9 194 23-231 54-256 (349)
238 2dnp_A RNA-binding protein 14; 98.7 2.1E-08 7E-13 75.4 5.0 42 389-438 7-48 (90)
239 3beg_B Splicing factor, argini 98.7 1E-08 3.4E-13 81.0 3.2 43 389-438 14-56 (115)
240 2cpd_A Apobec-1 stimulating pr 98.7 5.3E-08 1.8E-12 74.6 7.2 42 389-438 13-56 (99)
241 2vsy_A XCC0866; transferase, g 98.7 8E-07 2.7E-11 90.4 18.1 162 37-222 3-167 (568)
242 2ghp_A U4/U6 snRNA-associated 98.6 1.6E-08 5.4E-13 93.9 4.9 49 388-438 38-86 (292)
243 3gyz_A Chaperone protein IPGC; 98.6 1.1E-07 3.8E-12 78.9 9.6 105 19-125 32-136 (151)
244 2cq2_A Hypothetical protein LO 98.6 1.4E-08 4.9E-13 79.1 3.5 42 391-438 25-68 (114)
245 2vgx_A Chaperone SYCD; alterna 98.6 5.5E-07 1.9E-11 74.3 13.3 117 2-124 4-120 (148)
246 2dgu_A Heterogeneous nuclear r 98.6 3.5E-08 1.2E-12 76.2 5.3 41 390-438 10-50 (103)
247 2hzc_A Splicing factor U2AF 65 98.6 2.7E-08 9.2E-13 74.2 4.1 44 389-438 4-58 (87)
248 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.5E-05 5.2E-10 70.4 22.9 183 24-246 5-213 (225)
249 3sde_A Paraspeckle component 1 98.6 3.7E-08 1.3E-12 89.8 5.8 47 391-438 96-142 (261)
250 2e44_A Insulin-like growth fac 98.6 2.8E-08 9.6E-13 75.6 4.0 46 389-438 13-59 (96)
251 1x5p_A Negative elongation fac 98.6 1E-07 3.5E-12 72.7 7.0 42 389-438 13-54 (97)
252 3dss_A Geranylgeranyl transfer 98.6 2.2E-05 7.5E-10 73.5 24.3 189 34-245 40-266 (331)
253 3smz_A Protein raver-1, ribonu 98.6 5.4E-08 1.8E-12 89.9 6.2 48 391-438 95-142 (284)
254 2cqh_A IGF-II mRNA-binding pro 98.6 2.5E-08 8.4E-13 75.5 3.2 43 389-438 6-49 (93)
255 3dss_A Geranylgeranyl transfer 98.6 2.4E-05 8.3E-10 73.2 24.2 229 4-245 49-303 (331)
256 1sjr_A Polypyrimidine tract-bi 98.6 4.7E-08 1.6E-12 81.1 5.0 46 389-438 44-89 (164)
257 2c2l_A CHIP, carboxy terminus 98.6 5.2E-07 1.8E-11 83.1 12.5 195 22-246 3-199 (281)
258 4f02_A Polyadenylate-binding p 98.6 4.3E-08 1.5E-12 86.5 4.8 45 392-438 104-148 (213)
259 2e2e_A Formate-dependent nitri 98.5 1.9E-06 6.7E-11 72.8 14.5 118 3-125 28-147 (177)
260 2xcb_A PCRH, regulatory protei 98.5 1.5E-06 5.1E-11 70.9 13.2 104 19-124 14-117 (142)
261 3nf1_A KLC 1, kinesin light ch 98.5 2.9E-05 1E-09 71.2 23.1 180 52-245 22-223 (311)
262 3zzy_A Polypyrimidine tract-bi 98.5 1.2E-07 4E-12 75.7 5.6 44 390-438 27-71 (130)
263 4ga2_A E3 SUMO-protein ligase 98.5 1.6E-06 5.6E-11 71.5 12.8 99 3-105 49-147 (150)
264 2vsy_A XCC0866; transferase, g 98.5 3.3E-06 1.1E-10 85.8 17.4 122 3-130 7-128 (568)
265 2fo7_A Synthetic consensus TPR 98.5 1.3E-05 4.6E-10 63.2 17.4 94 25-120 3-96 (136)
266 3sde_A Paraspeckle component 1 98.5 1.3E-07 4.4E-12 86.2 5.8 45 388-438 19-63 (261)
267 3qky_A Outer membrane assembly 98.5 1.2E-05 4.1E-10 72.6 19.0 180 3-220 33-232 (261)
268 3tyt_A Heterogeneous nuclear r 98.5 7.7E-08 2.6E-12 84.2 3.8 46 391-438 123-170 (205)
269 2e5i_A Heterogeneous nuclear r 98.4 4.1E-07 1.4E-11 72.2 7.4 42 391-438 25-67 (124)
270 3u1l_A PRE-mRNA-splicing facto 98.4 1.1E-07 3.8E-12 84.3 4.1 45 388-438 131-184 (240)
271 2bz2_A Negative elongation fac 98.4 2.2E-07 7.7E-12 73.8 5.4 42 389-438 37-78 (121)
272 2ghp_A U4/U6 snRNA-associated 98.4 1.4E-07 4.7E-12 87.5 4.8 50 389-438 208-259 (292)
273 2r5s_A Uncharacterized protein 98.4 3.1E-06 1E-10 71.7 12.9 116 4-125 25-140 (176)
274 2adc_A Polypyrimidine tract-bi 98.4 1.4E-07 4.9E-12 84.1 4.5 45 389-438 32-77 (229)
275 2pzi_A Probable serine/threoni 98.4 8.5E-06 2.9E-10 84.7 18.5 165 53-245 390-562 (681)
276 1fje_B Nucleolin RBD12, protei 98.4 2E-08 7E-13 85.6 -1.1 49 389-438 11-59 (175)
277 3smz_A Protein raver-1, ribonu 98.4 2.6E-07 9E-12 85.2 6.1 49 389-438 182-231 (284)
278 2e2e_A Formate-dependent nitri 98.4 5.2E-06 1.8E-10 70.1 13.5 127 35-218 22-150 (177)
279 3q7a_A Farnesyltransferase alp 98.4 1.4E-05 4.9E-10 75.1 17.4 222 4-245 73-330 (349)
280 1fje_B Nucleolin RBD12, protei 98.4 3.5E-07 1.2E-11 77.7 5.9 45 389-438 97-141 (175)
281 3edt_B KLC 2, kinesin light ch 98.4 5.6E-05 1.9E-09 68.1 20.8 162 72-246 15-198 (283)
282 3upv_A Heat shock protein STI1 98.4 1.7E-05 5.7E-10 62.8 14.9 100 22-123 3-102 (126)
283 3sz7_A HSC70 cochaperone (SGT) 98.3 9.3E-06 3.2E-10 67.7 13.8 104 20-125 8-111 (164)
284 3urz_A Uncharacterized protein 98.3 1.1E-05 3.7E-10 70.5 14.7 114 3-121 22-152 (208)
285 1p5q_A FKBP52, FK506-binding p 98.3 2E-06 6.8E-11 81.4 10.6 60 185-245 199-258 (336)
286 2fo7_A Synthetic consensus TPR 98.3 1.6E-05 5.5E-10 62.7 14.4 115 3-123 19-133 (136)
287 2pe8_A Splicing factor 45; RRM 98.3 7.4E-07 2.5E-11 68.7 6.1 48 391-438 8-61 (105)
288 2diu_A KIAA0430 protein; struc 98.3 6.5E-07 2.2E-11 66.2 5.3 36 393-438 11-51 (96)
289 2wvi_A Mitotic checkpoint seri 98.3 2.3E-05 7.9E-10 64.7 15.1 112 4-125 2-128 (164)
290 3ulq_A Response regulator aspa 98.3 8E-05 2.7E-09 71.3 21.7 224 3-246 121-368 (383)
291 1elw_A TPR1-domain of HOP; HOP 98.3 2.9E-05 9.8E-10 59.8 15.1 104 22-127 3-106 (118)
292 1qqe_A Vesicular transport pro 98.3 5.9E-05 2E-09 69.5 19.8 214 38-281 32-264 (292)
293 3esl_A Checkpoint serine/threo 98.3 2.8E-05 9.6E-10 66.1 15.8 119 3-124 10-146 (202)
294 4gco_A Protein STI-1; structur 98.3 8.3E-06 2.8E-10 65.1 11.8 93 3-100 31-123 (126)
295 1hz4_A MALT regulatory protein 98.3 0.00017 5.7E-09 68.6 23.2 229 3-246 32-282 (373)
296 2lni_A Stress-induced-phosphop 98.3 2.7E-05 9.1E-10 61.6 14.8 106 19-126 12-117 (133)
297 3ulq_A Response regulator aspa 98.3 0.00017 5.7E-09 69.0 23.1 201 29-243 109-332 (383)
298 4a1g_A Mitotic checkpoint seri 98.3 2.1E-05 7.1E-10 64.0 13.7 112 3-125 8-133 (152)
299 1a17_A Serine/threonine protei 98.3 0.00014 4.7E-09 60.0 19.3 104 22-127 12-115 (166)
300 2vyi_A SGTA protein; chaperone 98.3 5E-05 1.7E-09 59.6 15.7 105 20-126 9-113 (131)
301 2yhc_A BAMD, UPF0169 lipoprote 98.2 8.2E-05 2.8E-09 65.5 17.9 177 3-217 22-218 (225)
302 1hxi_A PEX5, peroxisome target 98.2 1.5E-05 5.2E-10 63.0 11.6 99 25-125 19-117 (121)
303 2kck_A TPR repeat; tetratricop 98.2 1E-05 3.6E-10 61.8 10.2 102 22-125 5-109 (112)
304 3tht_A Alkylated DNA repair pr 98.2 1E-06 3.5E-11 82.5 4.6 42 391-438 18-61 (345)
305 1dce_A Protein (RAB geranylger 98.2 8.8E-05 3E-09 75.1 19.3 176 35-232 40-241 (567)
306 3q49_B STIP1 homology and U bo 98.2 3.5E-05 1.2E-09 61.6 13.3 101 22-124 8-108 (137)
307 1na0_A Designed protein CTPR3; 98.2 0.0001 3.5E-09 57.1 15.7 103 23-127 9-111 (125)
308 2vgx_A Chaperone SYCD; alterna 98.2 1.3E-05 4.6E-10 65.8 10.8 77 44-122 8-84 (148)
309 3pgw_A U1-A; protein-RNA compl 98.2 2E-06 7E-11 79.1 6.4 45 389-438 205-249 (282)
310 2xcb_A PCRH, regulatory protei 98.1 2.1E-05 7E-10 64.0 10.9 77 44-122 5-81 (142)
311 4f3v_A ESX-1 secretion system 98.1 3.8E-05 1.3E-09 69.9 13.5 187 35-246 18-237 (282)
312 3qou_A Protein YBBN; thioredox 98.1 0.00022 7.5E-09 65.5 18.5 165 87-275 112-276 (287)
313 4a1g_A Mitotic checkpoint seri 98.1 8.4E-05 2.9E-09 60.4 13.5 84 175-267 64-149 (152)
314 1a17_A Serine/threonine protei 98.1 7.5E-05 2.6E-09 61.6 13.6 111 3-118 31-142 (166)
315 3u3w_A Transcriptional activat 98.1 0.0014 4.8E-08 60.0 23.6 162 73-245 90-265 (293)
316 1qm9_A Polypyrimidine tract-bi 98.1 7.5E-06 2.6E-10 71.0 7.5 45 389-438 118-163 (198)
317 4aez_C MAD3, mitotic spindle c 98.1 7.8E-05 2.7E-09 64.5 13.7 112 3-123 53-180 (223)
318 3esl_A Checkpoint serine/threo 98.1 0.00035 1.2E-08 59.4 17.3 102 162-267 58-163 (202)
319 1qqe_A Vesicular transport pro 98.0 0.00085 2.9E-08 61.6 21.4 208 41-281 3-226 (292)
320 2dba_A Smooth muscle cell asso 98.0 0.00011 3.7E-09 59.3 13.6 105 20-126 25-132 (148)
321 1elw_A TPR1-domain of HOP; HOP 98.0 7.6E-05 2.6E-09 57.3 12.0 93 3-100 22-114 (118)
322 3gyz_A Chaperone protein IPGC; 98.0 0.00017 5.8E-09 59.4 14.6 106 170-279 24-129 (151)
323 3upv_A Heat shock protein STI1 98.0 6.5E-05 2.2E-09 59.3 11.6 94 3-101 22-121 (126)
324 2xm6_A Protein corresponding t 98.0 0.015 5E-07 57.4 31.3 46 198-245 274-324 (490)
325 1hxi_A PEX5, peroxisome target 98.0 2.9E-05 9.8E-10 61.4 9.3 85 3-92 35-119 (121)
326 3q15_A PSP28, response regulat 98.0 0.003 1E-07 60.1 25.3 237 29-284 107-366 (378)
327 2adc_A Polypyrimidine tract-bi 98.0 1.1E-05 3.6E-10 71.9 7.4 44 390-438 150-194 (229)
328 2d9o_A DNAJ (HSP40) homolog, s 98.0 1.7E-05 5.7E-10 60.3 7.4 33 401-438 27-59 (100)
329 2qfc_A PLCR protein; TPR, HTH, 98.0 0.002 6.7E-08 59.0 23.1 176 58-245 76-265 (293)
330 1elr_A TPR2A-domain of HOP; HO 98.0 0.00014 4.7E-09 57.0 13.3 101 22-124 3-110 (131)
331 2vyi_A SGTA protein; chaperone 98.0 0.00014 4.6E-09 57.0 13.0 97 3-104 30-126 (131)
332 2lni_A Stress-induced-phosphop 98.0 8.6E-05 2.9E-09 58.6 11.8 96 3-103 34-129 (133)
333 1zu2_A Mitochondrial import re 98.0 3.8E-05 1.3E-09 63.4 9.6 88 38-125 17-123 (158)
334 3q15_A PSP28, response regulat 98.0 0.00071 2.4E-08 64.5 20.1 223 3-245 119-364 (378)
335 1p5q_A FKBP52, FK506-binding p 97.9 0.0001 3.5E-09 69.5 13.6 117 3-120 165-292 (336)
336 4f3v_A ESX-1 secretion system 97.9 3.1E-05 1.1E-09 70.5 9.4 195 3-225 24-249 (282)
337 2dit_A HIV TAT specific factor 97.9 1.8E-05 6.2E-10 61.7 6.7 46 389-438 13-69 (112)
338 2dba_A Smooth muscle cell asso 97.9 0.00014 4.8E-09 58.6 12.1 96 3-100 46-141 (148)
339 2xm6_A Protein corresponding t 97.9 0.02 6.9E-07 56.4 30.1 110 4-123 98-217 (490)
340 1jmt_A Splicing factor U2AF 35 97.9 1.1E-06 3.7E-11 67.7 -0.9 42 396-438 20-73 (104)
341 4gcn_A Protein STI-1; structur 97.9 0.00016 5.3E-09 57.5 11.9 101 22-124 7-114 (127)
342 3u64_A Protein TP_0956; tetrat 97.9 0.0058 2E-07 55.3 22.8 183 43-246 52-269 (301)
343 1na0_A Designed protein CTPR3; 97.9 0.00028 9.5E-09 54.6 12.9 94 3-101 27-120 (125)
344 1hz4_A MALT regulatory protein 97.9 0.0094 3.2E-07 56.2 26.2 234 29-280 20-279 (373)
345 2wvi_A Mitotic checkpoint seri 97.9 0.00036 1.2E-08 57.5 13.7 84 175-267 59-144 (164)
346 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00042 1.4E-08 59.8 15.0 147 25-216 8-154 (213)
347 3k9i_A BH0479 protein; putativ 97.9 6.4E-05 2.2E-09 58.7 8.8 88 4-93 9-96 (117)
348 2c2l_A CHIP, carboxy terminus 97.8 0.00047 1.6E-08 63.1 15.8 171 3-212 22-199 (281)
349 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0003 1E-08 60.8 13.6 102 22-125 36-153 (213)
350 2kat_A Uncharacterized protein 97.8 0.00022 7.6E-09 55.2 11.5 82 3-89 3-84 (115)
351 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00023 7.8E-09 59.1 12.1 83 156-246 26-108 (164)
352 1owx_A Lupus LA protein, SS-B, 97.8 1.8E-05 6.3E-10 61.9 4.6 41 389-429 16-57 (121)
353 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0052 1.8E-07 56.7 22.3 180 36-244 29-222 (307)
354 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0012 4.2E-08 61.0 18.0 208 36-281 4-222 (307)
355 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00085 2.9E-08 57.5 15.7 103 22-126 37-155 (198)
356 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00019 6.6E-09 70.7 12.4 104 21-126 266-384 (457)
357 3q49_B STIP1 homology and U bo 97.8 0.0002 6.9E-09 57.0 10.5 93 3-100 27-124 (137)
358 3rkv_A Putative peptidylprolyl 97.8 0.00083 2.9E-08 55.4 14.6 104 22-127 10-131 (162)
359 1dce_A Protein (RAB geranylger 97.7 0.00097 3.3E-08 67.5 17.7 179 4-196 48-240 (567)
360 3v4m_A Splicing factor U2AF 65 97.7 2.4E-05 8.3E-10 60.1 4.4 48 391-438 5-64 (105)
361 4aez_C MAD3, mitotic spindle c 97.7 0.0004 1.4E-08 60.0 12.1 94 162-264 98-195 (223)
362 1zu2_A Mitochondrial import re 97.7 0.00026 9E-09 58.3 10.2 86 3-92 20-125 (158)
363 2if4_A ATFKBP42; FKBP-like, al 97.7 9.7E-05 3.3E-09 69.7 8.7 117 3-124 197-330 (338)
364 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00017 5.7E-09 68.1 10.3 36 22-57 178-213 (338)
365 2hr2_A Hypothetical protein; a 97.7 0.00045 1.5E-08 57.0 11.5 101 22-124 10-133 (159)
366 3k9i_A BH0479 protein; putativ 97.7 0.00014 4.8E-09 56.7 8.1 80 166-246 8-90 (117)
367 2xev_A YBGF; tetratricopeptide 97.7 0.00095 3.2E-08 52.3 13.2 98 26-125 5-108 (129)
368 2kck_A TPR repeat; tetratricop 97.6 0.00034 1.2E-08 53.0 9.9 83 156-246 21-106 (112)
369 1na3_A Designed protein CTPR2; 97.6 0.00089 3E-08 48.8 11.6 80 22-102 8-87 (91)
370 2kat_A Uncharacterized protein 97.6 0.00045 1.5E-08 53.4 10.3 72 173-245 10-81 (115)
371 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00032 1.1E-08 60.2 10.4 100 3-103 56-167 (198)
372 2xev_A YBGF; tetratricopeptide 97.6 0.00091 3.1E-08 52.4 12.1 63 183-246 40-105 (129)
373 3e4b_A ALGK; tetratricopeptide 97.6 0.039 1.3E-06 53.9 26.4 194 25-245 178-386 (452)
374 3mv2_B Coatomer subunit epsilo 97.6 0.02 6.8E-07 52.7 22.4 187 42-253 85-287 (310)
375 3rkv_A Putative peptidylprolyl 97.6 0.00066 2.2E-08 56.1 11.6 91 155-246 25-126 (162)
376 3ue2_A Poly(U)-binding-splicin 97.6 4.2E-05 1.4E-09 60.1 3.7 48 391-438 20-76 (118)
377 3rjv_A Putative SEL1 repeat pr 97.5 0.0083 2.8E-07 52.0 18.5 177 42-246 5-197 (212)
378 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0004 1.4E-08 68.3 10.5 117 3-120 286-413 (457)
379 1xi4_A Clathrin heavy chain; a 97.5 0.014 4.8E-07 63.8 22.5 77 35-123 1088-1164(1630)
380 1ihg_A Cyclophilin 40; ppiase 97.5 0.00033 1.1E-08 67.0 9.2 100 3-103 241-352 (370)
381 2l6j_A TPR repeat-containing p 97.5 0.0015 5.1E-08 49.5 11.2 69 22-91 3-71 (111)
382 4gcn_A Protein STI-1; structur 97.4 0.0021 7.3E-08 50.8 11.3 61 185-246 11-71 (127)
383 3rjv_A Putative SEL1 repeat pr 97.4 0.059 2E-06 46.4 22.4 184 3-214 4-199 (212)
384 3ly7_A Transcriptional activat 97.4 0.011 3.7E-07 55.6 17.6 92 182-280 277-368 (372)
385 1elr_A TPR2A-domain of HOP; HO 97.3 0.0015 5.3E-08 50.7 10.3 92 3-100 22-120 (131)
386 3ma5_A Tetratricopeptide repea 97.3 0.00027 9.4E-09 53.4 5.5 69 20-89 4-72 (100)
387 3ma5_A Tetratricopeptide repea 97.3 0.00097 3.3E-08 50.3 8.7 66 179-245 4-69 (100)
388 1wao_1 Serine/threonine protei 97.3 0.00036 1.2E-08 69.1 7.8 109 4-117 25-134 (477)
389 1xi4_A Clathrin heavy chain; a 97.3 0.046 1.6E-06 59.9 24.1 189 24-242 1196-1441(1630)
390 3e4b_A ALGK; tetratricopeptide 97.3 0.0053 1.8E-07 60.1 16.0 80 163-245 194-279 (452)
391 1ihg_A Cyclophilin 40; ppiase 97.2 0.0032 1.1E-07 60.0 13.1 102 23-126 223-340 (370)
392 3gw4_A Uncharacterized protein 97.2 0.033 1.1E-06 47.0 18.3 90 155-246 80-176 (203)
393 1na3_A Designed protein CTPR2; 97.1 0.009 3.1E-07 43.1 11.9 65 181-246 8-72 (91)
394 1wao_1 Serine/threonine protei 97.1 0.001 3.4E-08 65.9 7.6 98 26-125 9-106 (477)
395 2hr2_A Hypothetical protein; a 97.0 0.0049 1.7E-07 50.7 10.1 91 155-246 25-131 (159)
396 3ro3_A PINS homolog, G-protein 97.0 0.059 2E-06 43.0 16.8 89 155-245 63-157 (164)
397 3u64_A Protein TP_0956; tetrat 97.0 0.011 3.6E-07 53.6 12.8 116 7-125 139-272 (301)
398 3gw4_A Uncharacterized protein 96.9 0.085 2.9E-06 44.3 18.3 164 36-213 5-177 (203)
399 4g26_A Pentatricopeptide repea 96.9 0.17 5.8E-06 50.1 22.4 164 25-245 28-203 (501)
400 2l6j_A TPR repeat-containing p 96.9 0.019 6.4E-07 43.1 12.3 63 183-246 5-67 (111)
401 4b4t_Q 26S proteasome regulato 96.9 0.092 3.2E-06 50.3 20.1 199 34-245 15-244 (434)
402 3ro3_A PINS homolog, G-protein 96.9 0.023 7.8E-07 45.5 13.5 90 155-246 23-118 (164)
403 4b4t_Q 26S proteasome regulato 96.9 0.077 2.6E-06 50.8 19.3 163 72-246 18-204 (434)
404 2kc7_A BFR218_protein; tetratr 96.8 0.013 4.4E-07 43.4 10.1 65 32-97 9-74 (99)
405 3u3w_A Transcriptional activat 96.8 0.045 1.6E-06 49.7 15.8 129 106-246 88-225 (293)
406 1b89_A Protein (clathrin heavy 96.7 0.021 7.3E-07 55.1 13.5 82 162-243 221-308 (449)
407 3n71_A Histone lysine methyltr 96.6 0.049 1.7E-06 53.8 15.7 91 155-246 323-422 (490)
408 2qfc_A PLCR protein; TPR, HTH, 96.6 0.12 4E-06 46.9 17.4 129 106-246 88-225 (293)
409 3bee_A Putative YFRE protein; 96.5 0.034 1.2E-06 41.2 10.4 67 180-246 4-72 (93)
410 3bee_A Putative YFRE protein; 96.4 0.012 4E-07 43.7 7.8 68 22-90 5-75 (93)
411 3mv2_B Coatomer subunit epsilo 96.4 0.2 7E-06 45.9 17.2 191 5-219 86-289 (310)
412 1b89_A Protein (clathrin heavy 96.4 0.22 7.6E-06 48.0 18.1 224 25-280 150-414 (449)
413 2kc7_A BFR218_protein; tetratr 96.3 0.061 2.1E-06 39.5 11.1 62 189-253 7-69 (99)
414 3s6e_A RNA-binding protein 39; 96.2 0.0029 9.8E-08 49.1 3.2 43 392-438 8-60 (114)
415 4g26_A Pentatricopeptide repea 96.1 0.92 3.2E-05 44.7 21.7 171 94-280 28-201 (501)
416 3qww_A SET and MYND domain-con 96.1 0.046 1.6E-06 53.0 12.0 91 155-246 312-411 (433)
417 3n71_A Histone lysine methyltr 95.8 0.26 8.9E-06 48.6 16.1 126 105-245 321-463 (490)
418 3ly7_A Transcriptional activat 94.8 2.3 7.9E-05 39.8 18.1 154 46-222 183-350 (372)
419 3dxb_A Thioredoxin N-terminall 94.8 0.02 6.8E-07 50.1 3.8 35 404-438 142-180 (222)
420 3qwp_A SET and MYND domain-con 94.5 0.19 6.4E-06 48.7 10.2 89 156-245 302-399 (429)
421 1pc2_A Mitochondria fission pr 93.2 1.4 4.6E-05 35.7 11.4 89 156-253 13-105 (152)
422 2dnr_A Synaptojanin-1; RRM dom 92.4 0.13 4.4E-06 37.5 3.9 35 393-427 9-51 (91)
423 1klx_A Cysteine rich protein B 91.4 4.2 0.00014 31.8 12.5 106 164-280 11-120 (138)
424 2v5f_A Prolyl 4-hydroxylase su 91.2 2.3 7.9E-05 31.5 10.2 68 156-224 20-87 (104)
425 2v5f_A Prolyl 4-hydroxylase su 89.3 5.2 0.00018 29.5 11.3 64 187-253 10-80 (104)
426 3qww_A SET and MYND domain-con 89.2 1.7 5.8E-05 41.9 9.8 89 195-285 311-410 (433)
427 1pc2_A Mitochondria fission pr 88.7 2.2 7.4E-05 34.4 8.4 87 39-126 14-104 (152)
428 1ufw_A Synaptojanin 2; RNP dom 86.6 0.26 8.8E-06 36.2 1.6 35 393-427 17-60 (95)
429 1uw4_A UPF3X; nonsense mediate 86.6 1.6 5.3E-05 31.9 5.8 39 392-430 2-40 (91)
430 3qwp_A SET and MYND domain-con 86.4 13 0.00045 35.6 14.1 92 106-212 300-400 (429)
431 1klx_A Cysteine rich protein B 83.9 13 0.00045 28.8 13.6 111 3-125 13-129 (138)
432 1whv_A Poly(A)-specific ribonu 81.1 2.6 8.7E-05 31.0 4.9 33 393-426 17-49 (100)
433 2ff4_A Probable regulatory pro 80.7 17 0.00057 34.2 12.1 55 31-86 179-233 (388)
434 2l9w_A U4/U6 snRNA-associated- 79.1 2.3 8E-05 31.9 4.2 38 389-426 19-61 (117)
435 3ctr_A Poly(A)-specific ribonu 78.0 2.9 9.9E-05 30.8 4.3 33 393-426 7-39 (101)
436 4gns_B Protein CSD3, chitin bi 77.5 64 0.0022 33.2 15.8 59 184-243 339-397 (754)
437 2dhx_A Poly (ADP-ribose) polym 73.9 7.8 0.00027 28.7 5.8 35 389-423 6-45 (104)
438 1nzn_A CGI-135 protein, fissio 67.4 26 0.0009 27.0 7.8 52 165-217 55-108 (126)
439 4b4t_R RPN7, 26S proteasome re 67.4 33 0.0011 32.7 10.5 63 183-246 132-197 (429)
440 1nzn_A CGI-135 protein, fissio 66.7 42 0.0014 25.9 10.0 55 198-254 53-109 (126)
441 4f25_A Polyadenylate-binding p 65.6 1.7 5.6E-05 33.1 0.6 18 390-407 96-113 (115)
442 3o48_A Mitochondria fission 1 62.2 36 0.0012 26.5 7.7 54 198-253 58-112 (134)
443 2ff4_A Probable regulatory pro 54.4 52 0.0018 30.8 9.1 58 187-245 176-233 (388)
444 1y8m_A FIS1; mitochondria, unk 53.4 81 0.0028 24.9 8.7 54 198-253 57-111 (144)
445 3o48_A Mitochondria fission 1 52.7 34 0.0012 26.6 6.1 54 164-218 59-113 (134)
446 3pq1_A Poly(A) RNA polymerase; 52.4 6.6 0.00022 37.9 2.4 35 391-426 53-87 (464)
447 1y8m_A FIS1; mitochondria, unk 52.3 50 0.0017 26.1 7.0 53 165-218 59-112 (144)
448 2l08_A Regulator of nonsense t 48.5 15 0.0005 27.0 3.2 37 390-426 8-44 (97)
449 4b4t_P 26S proteasome regulato 48.4 88 0.003 29.8 9.8 72 182-254 137-214 (445)
450 3spa_A Mtrpol, DNA-directed RN 44.5 2.8E+02 0.0095 29.9 13.2 100 25-125 129-233 (1134)
451 1wey_A Calcipressin 1; structu 42.3 19 0.00065 26.7 3.0 34 391-424 5-43 (104)
452 4gns_B Protein CSD3, chitin bi 42.0 2.7E+02 0.0092 28.6 12.6 132 61-214 252-398 (754)
453 1pjn_A Histone-binding protein 41.3 14 0.00048 19.5 1.5 13 316-328 2-14 (26)
454 3spa_A Mtrpol, DNA-directed RN 38.1 3.3E+02 0.011 29.3 12.5 65 184-249 129-197 (1134)
455 2br9_A 14-3-3E, 14-3-3 protein 33.6 2.3E+02 0.0078 24.3 11.1 54 158-211 147-201 (234)
456 1o9d_A 14-3-3-like protein C; 33.2 2.5E+02 0.0084 24.6 11.5 53 158-210 152-205 (260)
457 2o8p_A 14-3-3 domain containin 33.1 1.5E+02 0.0052 25.3 7.6 28 93-120 168-195 (227)
458 2npm_A 14-3-3 domain containin 32.9 2.5E+02 0.0085 24.5 10.8 54 158-212 173-227 (260)
459 3iqu_A 14-3-3 protein sigma; s 32.8 2.4E+02 0.0081 24.3 11.2 55 157-211 149-204 (236)
460 3ffl_A Anaphase-promoting comp 31.7 1.5E+02 0.005 24.0 6.9 57 189-246 27-92 (167)
461 3mkq_B Coatomer subunit alpha; 30.7 1.3E+02 0.0045 24.6 6.7 41 198-243 20-60 (177)
462 3uzd_A 14-3-3 protein gamma; s 30.1 2.7E+02 0.0093 24.1 10.6 54 158-211 148-202 (248)
463 1wwh_A Nucleoporin 35, nucleop 28.9 49 0.0017 25.2 3.5 34 389-423 22-55 (119)
464 3ubw_A 14-3-3E, 14-3-3 protein 27.7 3.1E+02 0.01 24.0 11.1 54 158-211 173-227 (261)
465 2w2u_A Hypothetical P60 katani 26.3 1.7E+02 0.0058 20.4 8.4 17 229-245 31-47 (83)
466 4b4t_R RPN7, 26S proteasome re 25.5 1.3E+02 0.0044 28.5 6.7 65 218-282 132-196 (429)
467 1zbp_A Hypothetical protein VP 24.4 3.4E+02 0.012 23.8 8.6 62 165-227 14-78 (273)
468 1ya0_A SMG-7 transcript varian 23.7 2.9E+02 0.0098 26.8 8.8 60 184-244 154-213 (497)
469 3efz_A 14-3-3 protein; 14-3-3, 22.7 3.9E+02 0.013 23.4 11.8 56 157-212 168-226 (268)
470 1zbp_A Hypothetical protein VP 21.1 3.1E+02 0.011 24.1 7.6 51 194-245 9-59 (273)
471 2v6y_A AAA family ATPase, P60 21.1 2.2E+02 0.0074 19.8 8.0 17 229-245 23-39 (83)
472 3fut_A Dimethyladenosine trans 20.3 68 0.0023 28.3 3.3 34 392-426 111-144 (271)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.97 E-value=9.1e-29 Score=255.01 Aligned_cols=243 Identities=15% Similarity=0.184 Sum_probs=200.5
Q ss_pred HhHHHHHHHHHHHHhcC-------ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHH-HHHHHHHHcCCCCH
Q 013659 21 EKFQQYMIYLKYEQSSG-------DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR-DVYSRATKNCPWVG 92 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g-------~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~-~i~erAl~~~p~~~ 92 (438)
.....|..|++||+.++ ...+++.+|++||..+|.++++|++|+.|+...+. .+.++ .+|+||+.+||++.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~-~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT-DSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC-CTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhCCCCH
Confidence 55789999999999875 24678999999999999999999999999987754 45575 99999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccH------------------HHHHHHHHHHHHHHHHhhhcccccchh
Q 013659 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF------------------EEYLDLFLTRIDGLRRRILFSGEVEGV 154 (438)
Q Consensus 93 ~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~------------------~~~~~~~~~~~~~l~rr~~~~~~~~~~ 154 (438)
.||..|+.+.+. .++.+.++.||++++...+... ...-.+|..++.+.+|.
T Consensus 379 ~Lwl~~a~~ee~-~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~---------- 447 (679)
T 4e6h_A 379 VLAFSLSEQYEL-NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI---------- 447 (679)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc----------
Confidence 999999997666 6779999999999997532100 01334677777666543
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~ 234 (438)
.+++.+|.+|.+|++.+ ......+|..+|.+|...+++++.||+||+++|+.+|+...+|+.|++|+...|+.+
T Consensus 448 ~~l~~AR~vf~~A~~~~------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLK------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HCHHHHHHHHHHHHHTG------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 45678889999987752 122356899999999998867999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhh
Q 013659 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (438)
Q Consensus 235 ~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~ 281 (438)
+||.+|++|+....+...+..+|..|++||..+|+++++..+..++.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998532233578999999999999999999888776654
No 2
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.3e-23 Score=198.36 Aligned_cols=240 Identities=21% Similarity=0.271 Sum_probs=190.0
Q ss_pred hHhHHHHHHHHHHHHhcC----Ch----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh------ccch-------hHHH
Q 013659 20 SEKFQQYMIYLKYEQSSG----DP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVG-------NVVR 78 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g----~~----~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~------~~~~-------~~~~ 78 (438)
+.....|..|+++|+++. ++ .++..+|++||..+|.++++|..|+.++... .++. +.++
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 457789999999998862 43 6888999999999999999999999998643 2343 6799
Q ss_pred HHHHHHHH-cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcH
Q 013659 79 DVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (438)
Q Consensus 79 ~i~erAl~-~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (438)
.+|+||+. ..|.+..+|..|+.+++. .++.+.++.+|++++...+..... +|..+...+.+ . .++
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~-~---------~~~ 150 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFARR-A---------EGI 150 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSSSSCTHH---HHHHHHHHHHH-H---------HCH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccccCccH---HHHHHHHHHHH-h---------cCH
Confidence 99999999 579999999999996665 678999999999999987654321 33333333321 1 345
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHH
Q 013659 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar 237 (438)
+..+..|++|+.. .+....+|..++.++....++++.|+.+|+++++.+|++..+|..|+.++...|++++|+
T Consensus 151 ~~A~~~~~~a~~~-------~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 151 KSGRMIFKKARED-------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHHHHHTS-------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666653 344466888888887664349999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 238 SIYKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 238 ~i~~ral~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
.+|++++... ++++....+|..|+.|+..+|+.+....+..++
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999841 233356789999999999999988876655443
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.93 E-value=2.3e-24 Score=216.10 Aligned_cols=247 Identities=12% Similarity=0.118 Sum_probs=189.1
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC-------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~-------~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~ 76 (438)
+|..|+.++...+.. ..+.|..|++||+.++. ..++..+|++||..+|.++.+|++|+.|+... ++.+.
T Consensus 156 ar~~y~~~~~~~~~~---s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-~~~~~ 231 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGW---SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI-GQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHTC---SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHhhc---cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHH
Confidence 466666666433221 45689999999986531 46789999999999999999999999999865 46788
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----cccHHHHHHHHHHHHHHHHHhhhccccc
Q 013659 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLRRRILFSGEV 151 (438)
Q Consensus 77 ~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~-----~~~~~~~~~~~~~~~~~l~rr~~~~~~~ 151 (438)
++.||+||+.. |++..||..|+.+++. . +....++++.+... .........+|..++.+++|.
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~e~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~------- 299 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVMDE--E--AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK------- 299 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHTTC--T--HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhcch--h--HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc-------
Confidence 99999999999 9999999999875332 1 12333333321111 001122346777777666543
Q ss_pred chhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc
Q 013659 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (438)
Q Consensus 152 ~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g 231 (438)
.+++.+|.+|++| .. ......+|..+|.+|...+++++.||.||+.+++.+|+..++|+.|++||...|
T Consensus 300 ---~~~~~AR~i~~~A-~~-------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 300 ---RGLELFRKLFIEL-GN-------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp ---HCHHHHHHHHHHH-TT-------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHh-hC-------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 3567788888888 21 112356999999999988877999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013659 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
+.++||.+|+++.. ...+|..|++||..+|++++++.++++.++.+
T Consensus 369 ~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 369 DEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp CHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 99999999999842 56899999999999999999988888776644
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.93 E-value=1e-23 Score=217.36 Aligned_cols=272 Identities=13% Similarity=0.168 Sum_probs=175.1
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc---hhHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---GNVVRDV 80 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~---~~~~~~i 80 (438)
....||.+|..+|. +++.|..|++++...+++..++.+|||+|..+|.+..+|..|+.+.... ++ .+.+..|
T Consensus 51 ~i~~lE~~l~~np~----d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~l 125 (679)
T 4e6h_A 51 VIGKLNDMIEEQPT----DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPV 125 (679)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHH
T ss_pred HHHHHHHHHHHCcC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHH
Confidence 44567777777776 6777777777777777777777777777777777777777777776543 34 5667777
Q ss_pred HHHHHHcCC--CCHHHHHHHHHHHHHccCC-------HHHHHHHHHHHHhC-Cc---c---cHHHHHHHHHH--------
Q 013659 81 YSRATKNCP--WVGELWVRSLLSLERSRAS-------EEEISTVFEKSLLC-AF---S---TFEEYLDLFLT-------- 136 (438)
Q Consensus 81 ~erAl~~~p--~~~~lW~~y~~~le~~~~~-------~~~~~~i~~ral~~-~~---~---~~~~~~~~~~~-------- 136 (438)
|+|||..|| .+..||..|+.++...... .+.++.+|++|+.. +. . .|..|+.+...
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 777777773 4667777777766553322 24466777777742 21 1 24444443221
Q ss_pred ---HHHHHH---Hhhhcc--ccc----chhhcH-------------HHHHHHHHHHHHHHhh------hhcC--------
Q 013659 137 ---RIDGLR---RRILFS--GEV----EGVLDY-------------SLIRETFQRASDYLSE------QMKN-------- 177 (438)
Q Consensus 137 ---~~~~l~---rr~~~~--~~~----~~~~~~-------------~~~r~~f~~a~~~l~~------~~~~-------- 177 (438)
..+.++ .|++.. ... ..+..+ ......|..|+..+.. .+..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 011111 122211 000 011111 1111223333322211 1110
Q ss_pred ------------CchhHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHH-H
Q 013659 178 ------------TDGLLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR-S 238 (438)
Q Consensus 178 ------------~~~~~~l~~~~a~~e~~~~~~------~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar-~ 238 (438)
....+.+|..|+.+|...+.+ ..+++.+|+++|..+|...++|+.|++|+...|+.+.|+ .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 013468999999999875422 356788999999999999999999999999999999996 9
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhh
Q 013659 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (438)
Q Consensus 239 i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~ 283 (438)
+|++|+. .+ +....||..|+.||...|+.+..+.+++++...
T Consensus 366 il~rAi~-~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 366 YLKLGQQ-CI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999997 33 346789999999999999999888777777654
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=8.3e-22 Score=200.03 Aligned_cols=242 Identities=21% Similarity=0.265 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHhcC----Ch----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh------ccchh-------HHHHH
Q 013659 22 KFQQYMIYLKYEQSSG----DP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVGN-------VVRDV 80 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g----~~----~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~------~~~~~-------~~~~i 80 (438)
....|..|+.++...+ +. .+++.+|++||..+|.++++|+.|+.++... .++.+ .++.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 3579999999998653 33 4788999999999999999999999998852 34444 79999
Q ss_pred HHHHHH-cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHH
Q 013659 81 YSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (438)
Q Consensus 81 ~erAl~-~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~ 159 (438)
|+||+. .+|.+..+|..|+.+++. .++.+.++.+|++++..++.... .+|..+...+++ . .+++.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~-~---------~~~~~ 374 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARR-A---------EGIKS 374 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHH-H---------HHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHh-cCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHHH-h---------cCHHH
Confidence 999998 789999999999986554 68899999999999998765432 244444333322 1 34555
Q ss_pred HHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHH
Q 013659 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (438)
Q Consensus 160 ~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i 239 (438)
.+.+|++|+.. .+....++...+.++....|+++.|+.+|+++++.+|++..+|+.|++++...|++++||.+
T Consensus 375 A~~~~~~Al~~-------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 375 GRMIFKKARED-------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHTC-------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhc-------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 66666666553 33334566666666654334899999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013659 240 YKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 240 ~~ral~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
|++++... .++.....+|..|+.||..+|+.+++..+..++....
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999842 1122346799999999999999999887776654433
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=7.2e-21 Score=193.09 Aligned_cols=271 Identities=16% Similarity=0.194 Sum_probs=188.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhH----HH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV----VR 78 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~----~~ 78 (438)
++|..||.+|...|. +...|..|+.++...|+++.+..+|+|||..+| ++++|+.|+.|+....++.+. ++
T Consensus 30 ~a~~~~e~al~~~P~----~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 30 KARKTYERLVAQFPS----SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 578999999999886 788999999999999999999999999999999 788999999988755444333 45
Q ss_pred HHHHHHHHcC---CCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCcccHH----HHHHHHHHH------
Q 013659 79 DVYSRATKNC---PWVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTFE----EYLDLFLTR------ 137 (438)
Q Consensus 79 ~i~erAl~~~---p~~~~lW~~y~~~le~~--------~~~~~~~~~i~~ral~~~~~~~~----~~~~~~~~~------ 137 (438)
.+|++|+..+ |.+..+|..|+.++... .+..+.++.+|++++..+..... .|..+....
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 6999999875 45789999999865431 35678899999999985433221 111111000
Q ss_pred --H-----HHHHHh-----------hhcc-------c----------ccchhhcHHHH--------HHHHHHHHHHHhhh
Q 013659 138 --I-----DGLRRR-----------ILFS-------G----------EVEGVLDYSLI--------RETFQRASDYLSEQ 174 (438)
Q Consensus 138 --~-----~~l~rr-----------~~~~-------~----------~~~~~~~~~~~--------r~~f~~a~~~l~~~ 174 (438)
+ .+...+ .... . .+..+.++..- .....+++..+..+
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0 000000 0000 0 00001111000 00011222333333
Q ss_pred hcCCchhHHHHHHHHHHHHH-------cCCCHH-------HHHHHHHHHHH-hccchHHHHHHHHHHHHhcccHHHHHHH
Q 013659 175 MKNTDGLLRLYAYWAHLEQS-------MGKDMV-------SARGVWERLLK-ISGAMLEAWQSYISMEIELDHINEARSI 239 (438)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~-------~~~~~~-------~ar~i~e~~l~-~~~~~~~~W~~y~~~e~~~g~~~~ar~i 239 (438)
+...+....+|..|+.++.. .| +++ .|+.+|++++. .+|++..+|..|+.++...|+++.|+.+
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33345556799999998875 56 776 89999999997 6899999999999999999999999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhh
Q 013659 240 YKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (438)
Q Consensus 240 ~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~ 281 (438)
|++++.. ++..+..+|..|..|+...|+++....++.++.
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999983 445556799999999999998877766665543
No 7
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.87 E-value=1.8e-20 Score=187.83 Aligned_cols=215 Identities=14% Similarity=0.105 Sum_probs=153.0
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013659 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
..+|..||.+|...|. |+++++..||+|||..+| ++++|..|+.|....+...+.++.+|
T Consensus 12 ~~aR~vyer~l~~~P~-------------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-------------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp CCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HHHHHHHHHHHHHCCC-------------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3567777777777662 679999999999999998 99999999999988764556789999
Q ss_pred HHHHHcC---CCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhccc---cc-
Q 013659 82 SRATKNC---PWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSG---EV- 151 (438)
Q Consensus 82 erAl~~~---p~~~~lW~~y~~~le~---~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~---~~- 151 (438)
++|+.++ |.++.||..|+.+++. .++..+.++.||+|||..+...... +|..|..+... ..... ..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~---lw~~Y~~fE~~-~~~~~~~~~~~ 147 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSE---LWKDFENFELE-LNKITGKKIVG 147 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHH---HHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHH---HHHHHHHHHHH-hccccHHHHHH
Confidence 9999975 6789999999996542 1234678999999999976654433 33333332211 00000 00
Q ss_pred chhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhccchHHHHHHHHH
Q 013659 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYIS 225 (438)
Q Consensus 152 ~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~------~~~ar~i~e~~l~~~~~~~~~W~~y~~ 225 (438)
+...++...+..|..+...+.. ....+|..|+++|...+.. ..+++.+|++++..+|....+|+.|+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~ 221 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRG------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSE 221 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 0012233445555555544322 1346899999998754211 356788999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhc
Q 013659 226 MEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 226 ~e~~~g~~~~ar~i~~ral~~ 246 (438)
|+...|+.+.||.+|++|+..
T Consensus 222 ~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 222 YLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhC
Confidence 999999999999999999973
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=3.3e-19 Score=168.03 Aligned_cols=217 Identities=15% Similarity=0.189 Sum_probs=177.2
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHh-------cCCh-------hhHHHHHHHHHh-cCCCCHHHHHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS-------SGDP-------GRVQLLYERAIT-DFPVSSDLWLDYTQYL 67 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~-------~g~~-------~~~~~~yERal~-~~p~~~~lW~~Y~~~l 67 (438)
++...||.+|...|. +.++|..|+.++.. .|++ +.++.+|+|||. ..|.+..+|..|+.++
T Consensus 34 ~a~~~~~~al~~~p~----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 34 RVMFAYEQCLLVLGH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345799999999886 78899999999864 4886 899999999999 6999999999999998
Q ss_pred HhhccchhHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhh
Q 013659 68 DKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL 146 (438)
Q Consensus 68 ~~~~~~~~~~~~i~erAl~~~p~~~~-lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~ 146 (438)
... +..+.++.+|++|++..|.... +|..|+.++.+ .+..++++.+|++|+...+..+..++..-. +.+ .
T Consensus 110 ~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~--~~~---~-- 180 (308)
T 2ond_A 110 ESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAAL--MEY---Y-- 180 (308)
T ss_dssp HHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHH--HHH---H--
T ss_pred Hhc-CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHH---H--
Confidence 755 4678899999999999998776 99999986654 677899999999999887665443332111 000 0
Q ss_pred cccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---cc-chHHHHHH
Q 013659 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG-AMLEAWQS 222 (438)
Q Consensus 147 ~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~-~~~~~W~~ 222 (438)
...++...+..|++|+... +....+|..++.++...| +++.|+.+|++++.. .| +...+|..
T Consensus 181 ------~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~l~p~~~~~l~~~ 246 (308)
T 2ond_A 181 ------CSKDKSVAFKIFELGLKKY-------GDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWAR 246 (308)
T ss_dssp ------TSCCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred ------HcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 0145667778888887753 344679999999999999 899999999999995 44 36789999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhc
Q 013659 223 YISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 223 y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
|+.|+...|+.+.|+.++++++..
T Consensus 247 ~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 247 FLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 9
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=4.1e-13 Score=128.70 Aligned_cols=101 Identities=11% Similarity=0.020 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
...|...+......|+++.+..+|++++...|.+...|...+..+... +..+.+..+|++++...|.....|......+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345777777778888888888888888888888888888888876643 4667788888888888888888888877644
Q ss_pred HHccCCHHHHHHHHHHHHhCCcc
Q 013659 103 ERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 103 e~~~~~~~~~~~i~~ral~~~~~ 125 (438)
. ..+..+++..+|++++...+.
T Consensus 144 ~-~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 144 T-NTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCHH
T ss_pred H-ccccHHHHHHHHHHHHHhCcc
Confidence 4 467788888888888865443
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=2.7e-12 Score=124.09 Aligned_cols=264 Identities=13% Similarity=0.056 Sum_probs=158.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...++.++...|. +...|...+......|+++.+...|++++...|.+...|...+..+... +..+.+...|+
T Consensus 51 ~a~~~~~~a~~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 125 (388)
T 1w3b_A 51 RSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-SCSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 456677788877775 6667888888778888888888888888888888888888877766544 45566888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHH---------HHHHHhhh--ccccc
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRIL--FSGEV 151 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~---------~~l~rr~~--~~~~~ 151 (438)
+++...|....+|......+. ..+..+++..+|++++...+.....+..+-..+. ..+. ++. .....
T Consensus 126 ~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~p~~~ 203 (388)
T 1w3b_A 126 SALQYNPDLYCVRSDLGNLLK-ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE-KAVTLDPNFL 203 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHCTTCH
T ss_pred HHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCcH
Confidence 888888887778877666433 4677788888888888665543332222211110 0000 000 00000
Q ss_pred chhhcH---HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013659 152 EGVLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 152 ~~~~~~---~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
+.+... -.....+++|+..+...+...+....+|...+.+....| +++.|...|++++...|+....|...+....
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 000000 000011223333333333223444456666676766777 7777777777777777777777777777777
Q ss_pred hcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013659 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
..|+++.|..+|++++.. .++.+ ..+..........|+.+.....+
T Consensus 283 ~~g~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRL--CPTHA-DSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcccH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777777763 22222 34444555555556654443333
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.2e-12 Score=118.48 Aligned_cols=263 Identities=10% Similarity=0.035 Sum_probs=162.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.++..|...+......+...+.+...|+
T Consensus 40 ~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 40 MCYKLTSVVMEKDPF----HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp HHHHHHHHHHHHCTT----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 355667777766664 4445655666666667777777777777777777777777777665544325566777777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHH---------HHHHHHHhhhcc--ccc
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT---------RIDGLRRRILFS--GEV 151 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~---------~~~~l~rr~~~~--~~~ 151 (438)
+++...|.....|..+...+. ..+..+.+...|++++...+.....+..+-.. -...+. +.... ...
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~~~~~~ 193 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS-QALSIAPEDP 193 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH-HHHTTCTTCH
T ss_pred HHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHhCCCCh
Confidence 777777776777776665433 35666777777777775544321111111100 001111 11110 000
Q ss_pred c----------hhhcHHHHHHHHHHHHHHHhhhhcC--CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 013659 152 E----------GVLDYSLIRETFQRASDYLSEQMKN--TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (438)
Q Consensus 152 ~----------~~~~~~~~r~~f~~a~~~l~~~~~~--~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~ 219 (438)
. ...++......|++++......... .+....+|...+.+....| +++.|...|++++...|+...+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~ 272 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-KYAEALDYHRQALVLIPQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCSHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCccchHH
Confidence 0 1133444555555555543222111 1333468888899988888 8999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 013659 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (438)
|.....+....|+++.|...|++++.. .++.+......-..++...|+.+.+.
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~~a~~ 325 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDSEAYI 325 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCchhccC
Confidence 999999999999999999999999973 44555443333334667778766554
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=8e-12 Score=120.75 Aligned_cols=262 Identities=13% Similarity=0.103 Sum_probs=189.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|...+......|+++.+...|++++..+|.+...|......+.. .+..+.+..+|+
T Consensus 85 ~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 159 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD----FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-LGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 577889999988775 677899999988899999999999999999999999999999887764 456778999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHH---------HHHHHhhh-cccccc
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRIL-FSGEVE 152 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~---------~~l~rr~~-~~~~~~ 152 (438)
+++...|.....|......+. ..+..+.+...|++++...+.....+..+-..+. ..+.+-+. ......
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGCVFN-AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 999999999999998877444 4778899999999999877665444433222111 01110000 011100
Q ss_pred hhhc---HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Q 013659 153 GVLD---YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (438)
Q Consensus 153 ~~~~---~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~ 229 (438)
.+.. .-....-++.|+..+..++...+.....|...+.+....| +++.|..+|++++..+|++...|...+.....
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 0000 0011122455666666666555555678888899988899 89999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 013659 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (438)
Q Consensus 230 ~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (438)
.|+++.|..+|++++.. .++.+ ..+......-...|+.+.-.
T Consensus 318 ~g~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV--FPEFA-AAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp TTCHHHHHHHHHHHTTS--CTTCH-HHHHHHHHHHHTTTCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCCcH-HHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999973 33333 34444455545556644433
No 13
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.52 E-value=1.3e-13 Score=110.37 Aligned_cols=60 Identities=10% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+|..||.++.. + |+++||.+|+.+++.+..-..+|+.|++||.++|++.+||.|+.+|+.
T Consensus 63 LWIrYA~~~ei-~-D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 63 IQVRFAELKAI-Q-EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHHHHHH-H-CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-c-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 77788877543 5 899999999999988666688999999999999999999999999998
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.52 E-value=5.3e-12 Score=118.40 Aligned_cols=104 Identities=9% Similarity=-0.075 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+.+.+...+......|+++.+..+|++++...|.+...|..++..+... +..+.+..+|++++...|....+|......
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL-NKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4556777788778889999999999999999999999999888877644 567889999999999999999999998876
Q ss_pred HHHccCCHHHHHHHHHHHHhCCccc
Q 013659 102 LERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
+...+...+.+...|++++...+..
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~ 124 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTY 124 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTC
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCcc
Confidence 6654438899999999999876653
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=5.3e-12 Score=120.67 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=155.7
Q ss_pred hHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013659 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
.|+.++...|.........|...+......|+++.+..+|++++...|.+...|...+..+... +..+.+...|++++.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 126 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISALRRCLE 126 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHh
Confidence 5666665554311112345777777777888888999999999988888888888888766643 466778888999998
Q ss_pred cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHH------------------HHHHH------HHHHHHH
Q 013659 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY------------------LDLFL------TRIDGLR 142 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~------------------~~~~~------~~~~~l~ 142 (438)
..|....+|...+..+. ..+..+.+...|++++...+.....+ +.... .-...+.
T Consensus 127 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 205 (368)
T 1fch_A 127 LKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205 (368)
T ss_dssp HCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHH
Confidence 88888888888776544 36778888888888886554311110 00000 0000010
Q ss_pred Hhhh-ccc--ccchhh---cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 013659 143 RRIL-FSG--EVEGVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (438)
Q Consensus 143 rr~~-~~~--~~~~~~---~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (438)
+-+. ... ....+. .+-...+-+++|+.++..++...+....+|...+.+....| +++.|..+|++++...|+.
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-QSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCc
Confidence 0000 000 000000 00000112334444444433333444456666666666666 6777777777777777766
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCC-C--------hHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013659 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT-G--------SEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 217 ~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~-~--------~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
..+|...+......|+++.|...|++++... +.+ . ...+|......-...|+.+....+..+
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6777777777767777777777777776532 111 0 134555555555555665555544443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.50 E-value=1.6e-11 Score=116.30 Aligned_cols=214 Identities=14% Similarity=0.010 Sum_probs=124.4
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
|...|+.+|...|. +...|...+......|+++.+...|++++...|.+...|...+..+... ++.+.+...|++
T Consensus 22 A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 96 (359)
T 3ieg_A 22 ALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ-GKLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc-CChHHHHHHHHH
Confidence 45566666666554 4556666666666667777777777777777777777776666655533 345566777777
Q ss_pred HHHcCC---CCHHHHHHH------------HHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcc
Q 013659 84 ATKNCP---WVGELWVRS------------LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148 (438)
Q Consensus 84 Al~~~p---~~~~lW~~y------------~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~ 148 (438)
++...| .....|..+ +. +....+..+.+..+|++++...+.....+..+-..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 165 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQAL-DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI---------- 165 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH----------
Confidence 777666 555555544 12 2223556666677777766554443322221111110
Q ss_pred cccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH-----
Q 013659 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY----- 223 (438)
Q Consensus 149 ~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y----- 223 (438)
..+-++.|+..+...+...+.....|...+.+....| +++.|...|++++...|+....|..|
T Consensus 166 -----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 166 -----------KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG-DHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233 (359)
T ss_dssp -----------HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 0011233444444443334444556666777766666 67777777777777777666655444
Q ss_pred -------HHHHHhcccHHHHHHHHHHHHh
Q 013659 224 -------ISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 224 -------~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+......|+++.|..+|++++.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3335556777777777777776
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=5.1e-11 Score=117.15 Aligned_cols=224 Identities=12% Similarity=-0.025 Sum_probs=163.5
Q ss_pred hHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013659 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
.+..++...| .+...|...+......|+++.+..+|++++...|.+...|...+..+.. .+..+.+...|++++.
T Consensus 14 ~~~~~~~~~p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 14 GTENLYFQSM----ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ---------C----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred cccccccccH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 3445555555 4888999999999999999999999999999999999999999987764 4567889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccH---HHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHH
Q 013659 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF---EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~---~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (438)
..|.....|...+..+.. .+..+++..+|++++...+... ..+..+...+.... ............++......
T Consensus 89 ~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--LRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHH
Confidence 999999999998875554 7889999999999998776543 22222211100000 00000000001233344444
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013659 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
|++++. ..+....++...+.+....| +++.|..+|++++..+|+....|...+......|+++.|..+|+++
T Consensus 166 ~~~~~~-------~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 166 LDKILE-------VCVWDAELRELRAECFIKEG-EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHH-------HCTTCHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHH-------hCCCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444443 34455668888899888889 8999999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 013659 244 YSK 246 (438)
Q Consensus 244 l~~ 246 (438)
+..
T Consensus 238 ~~~ 240 (450)
T 2y4t_A 238 LKL 240 (450)
T ss_dssp HHH
T ss_pred HHh
Confidence 973
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=3.9e-11 Score=117.95 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=98.0
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|...+......|+++.+..+|++++...|.+...|...+..+... +..+.+..+|+
T Consensus 44 ~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 118 (450)
T 2y4t_A 44 DALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-GKLDEAEDDFK 118 (450)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467788888887775 6778999999889999999999999999999999999999999877654 56788999999
Q ss_pred HHHHcCCCCH---HHHHHHHHH-----------HHHccCCHHHHHHHHHHHHhCCcccHH
Q 013659 83 RATKNCPWVG---ELWVRSLLS-----------LERSRASEEEISTVFEKSLLCAFSTFE 128 (438)
Q Consensus 83 rAl~~~p~~~---~lW~~y~~~-----------le~~~~~~~~~~~i~~ral~~~~~~~~ 128 (438)
+++...|... ..|..++.. .....+..+.+..+|++++...+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999887 777765321 122367889999999999976655433
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=9.1e-12 Score=110.63 Aligned_cols=199 Identities=14% Similarity=-0.013 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+...|...+......|+++.+...|+++|...|.++..|......+... +..+.+...|++++...|.....|..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL-GLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5567888888889999999999999999999999999999999877754 567889999999999999999999988775
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHH
Q 013659 102 LERSR-----------ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (438)
Q Consensus 102 le~~~-----------~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~ 170 (438)
+.. . +..+++...|++++...+.....+..+-..+. .. .+++.....|++++..
T Consensus 83 ~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-----~~---------g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 83 YVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-----LL---------GERDKAEASLKQALAL 147 (217)
T ss_dssp HHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHHH
T ss_pred HHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-----Hc---------CChHHHHHHHHHHHhc
Confidence 554 4 66778888888888766654433332221110 11 3444555555555554
Q ss_pred HhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
. ....+|...+.+....| +++.|...|++++...|++..+|..+..+....|+++.|...|+++-.
T Consensus 148 -------~-~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 148 -------E-DTPEIRSALAELYLSMG-RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp -------C-CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred -------c-cchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 2 33456777777777777 788888888888888888888888888888888888888888877643
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.46 E-value=1e-11 Score=118.80 Aligned_cols=228 Identities=11% Similarity=-0.020 Sum_probs=141.6
Q ss_pred HHHHHHhcCCCC----HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013659 45 LYERAITDFPVS----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 45 ~yERal~~~p~~----~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
.++.++...+.+ ...|...+..+... ++.+.+..+|++++...|....+|......+. ..+..+.+..+|++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 49 ASEKGYYFHTENPFKDWPGAFEEGLKRLKE-GDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCL 126 (365)
T ss_dssp ----CCCCCSSCTTTTCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCcccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 344444443333 34477777766644 45677888888888888888888888777544 3677888888888888
Q ss_pred hCCcccHHHHHHHHHHH---------HHHHHHhhhc--ccccchh-------------hcHHHHHHHHHHHHHHHhhhhc
Q 013659 121 LCAFSTFEEYLDLFLTR---------IDGLRRRILF--SGEVEGV-------------LDYSLIRETFQRASDYLSEQMK 176 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~~---------~~~l~rr~~~--~~~~~~~-------------~~~~~~r~~f~~a~~~l~~~~~ 176 (438)
...+.....+..+-..+ ...+. ++.. ......+ ...-...+-+++|+.++..++.
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSHQQDACEALK-NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHccccHHHHHHHHH-HHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 76555333322221111 11111 1100 0000000 0000011334455555554444
Q ss_pred CCch--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013659 177 NTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (438)
Q Consensus 177 ~~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (438)
..+. ...+|...+.+....| +++.|..+|++++...|+...+|..........|+++.|..+|++++.. .++. .
T Consensus 206 ~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-~ 281 (365)
T 4eqf_A 206 QNGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGF-I 281 (365)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-H
T ss_pred hCcCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc-h
Confidence 3343 4568888888888888 8999999999999999999999999999999999999999999999983 3333 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHh
Q 013659 255 DICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 255 ~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
..+..........|+.+.....+.+
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555666666775544443433
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.45 E-value=1.1e-11 Score=116.06 Aligned_cols=218 Identities=10% Similarity=-0.024 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|+++.+..+|++++...|.+...|...+..+... +..+.+...|++++...|.....|...+..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~- 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-
Confidence 4555556566667777777777777777777777777666655433 45566777777777777777777766665443
Q ss_pred ccCCHHHHHHHHHHHHhCCcccHHHHHHH------------------H------HHHHHHHHHhhh-cccccchhh---c
Q 013659 105 SRASEEEISTVFEKSLLCAFSTFEEYLDL------------------F------LTRIDGLRRRIL-FSGEVEGVL---D 156 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~~~~~~~~~------------------~------~~~~~~l~rr~~-~~~~~~~~~---~ 156 (438)
..+..+.+...|++++...+.....+..+ + ......+.+-+. .......+. .
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 35666777777777775433311100000 0 000000000000 000000000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHH
Q 013659 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~a 236 (438)
+-...+-+++|+.++...+...+....+|...+.+....| +++.|..+|++++...|+....|...+......|+++.|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN-RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 0000011233333333333223334456666666666666 677777777777777776666777777766677777777
Q ss_pred HHHHHHHHh
Q 013659 237 RSIYKRCYS 245 (438)
Q Consensus 237 r~i~~ral~ 245 (438)
...|++++.
T Consensus 260 ~~~~~~a~~ 268 (327)
T 3cv0_A 260 AKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 22
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=5.4e-11 Score=121.48 Aligned_cols=245 Identities=10% Similarity=-0.042 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+...|...+......|+++.+..+|++++...|.+...|..++..+... +..+.+..+|++++...|....+|...+..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 6778888888888899999999999999988888888888888877644 456778889999988888888888887764
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHH---------HHHHHhhhc--ccccchh---hcHHHHHHHHHHH
Q 013659 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRILF--SGEVEGV---LDYSLIRETFQRA 167 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~---------~~l~rr~~~--~~~~~~~---~~~~~~r~~f~~a 167 (438)
+. ..+..+++..+|++++...+.....+..+-..+. ..+ +++.. ......+ ...-...+.+++|
T Consensus 383 ~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YL-CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY-TTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 44 4678888888999888755543332222211111 000 01000 0000000 0000001112333
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------ccch-HHHHHHHHHHHHhcccHHHHHHHH
Q 013659 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI------SGAM-LEAWQSYISMEIELDHINEARSIY 240 (438)
Q Consensus 168 ~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~------~~~~-~~~W~~y~~~e~~~g~~~~ar~i~ 240 (438)
+.++..++...+.....|...+.+....| +++.|..+|++++.. .|+. ..+|...+......|+++.|..+|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33333333222233345555555555555 566666666666655 3332 455666666666666666666666
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHHHhCCHHHH
Q 013659 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (438)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~ 273 (438)
++++.. .++. ..+|..........|+.+..
T Consensus 540 ~~~~~~--~p~~-~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 540 NQGLLL--STND-ANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHH--SSCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh--CCCC-hHHHHHHHHHHHHhCCHHHH
Confidence 666552 2222 24444445555555554433
No 23
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=4.2e-11 Score=122.31 Aligned_cols=250 Identities=10% Similarity=-0.014 Sum_probs=169.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013659 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~ 105 (438)
|...+....+.|+++.+..+|++++.. |.+...|...+..+... +..+.+..+|++++...|.....|..++..+..
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 351 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR-SRFIDVLAITTKILEIDPYNLDVYPLHLASLHE- 351 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH-
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-
Confidence 333344444567889999999999987 78999999999877754 567889999999999999888899888875554
Q ss_pred cCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHH---------HHHHHhhhc--ccccchh---hcHHHHHHHHHHHHHHH
Q 013659 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRILF--SGEVEGV---LDYSLIRETFQRASDYL 171 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~---------~~l~rr~~~--~~~~~~~---~~~~~~r~~f~~a~~~l 171 (438)
.+..+++..+|++++...+.....+..+-..+. ..+ +++.. ......+ ...-...+-+++|+.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF-SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 688899999999998765543333222211111 011 11110 1111100 01111122345566666
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcc----
Q 013659 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR---- 247 (438)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~---- 247 (438)
..+....+.....|...+.+....| +++.|..+|++++...|++...|...+......|+++.|..+|++++...
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 431 TTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 6555444445567788888888888 89999999999999888888889999998889999999999999998731
Q ss_pred cCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 248 FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 248 ~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
..++....+|..........|+.+.-...++++
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 011111467777777888888876655544443
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=2.3e-10 Score=108.25 Aligned_cols=213 Identities=11% Similarity=-0.014 Sum_probs=161.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+.+.|...+......|+++.+..+|++++...|.++.+|...+..+... ++.+.+...|++++...|.....|......
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4567888888888999999999999999999999999999999877654 567889999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCC
Q 013659 102 LERSRASEEEISTVFEKSLLCAF---STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~---~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (438)
+.. .+..+.+...|++++...+ .....+..+-... ................++......|++++. ..
T Consensus 81 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~ 150 (359)
T 3ieg_A 81 LLK-QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD--EMQRLRSQALDAFDGADYTAAITFLDKILE-------VC 150 (359)
T ss_dssp HHH-HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HC
T ss_pred HHH-cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hC
Confidence 554 6889999999999998877 4333222211000 000000000000001233334444444433 34
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+....++...+.+....| +++.|..+|++++...|+....|...+......|+++.|..+|++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEG-EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555678888999988899 8999999999999999999999999999999999999999999999973
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.42 E-value=4.8e-11 Score=113.92 Aligned_cols=237 Identities=11% Similarity=-0.021 Sum_probs=160.1
Q ss_pred cCChhhHHH-HHHHHHhcCCCCH----HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHH
Q 013659 36 SGDPGRVQL-LYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (438)
Q Consensus 36 ~g~~~~~~~-~yERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~ 110 (438)
.|+++.+.. .|++++...|.++ ..|...+..+... ++.+.+..+|++++...|....+|......+. ..+..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHH
Confidence 367888888 9999999888764 5577777766644 56788999999999999999999998877554 478899
Q ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHHH---------HHHHHhhhc--ccccch------------------hhcHHHHH
Q 013659 111 EISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRILF--SGEVEG------------------VLDYSLIR 161 (438)
Q Consensus 111 ~~~~i~~ral~~~~~~~~~~~~~~~~~~---------~~l~rr~~~--~~~~~~------------------~~~~~~~r 161 (438)
.+...|++++...+.....+..+-..+. ..+. ++.. ...... ....-...
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR-DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 9999999999876654433332221111 1111 1111 000000 01111133
Q ss_pred HHHHHHHHHHhhhhcCCch--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHH
Q 013659 162 ETFQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i 239 (438)
.-+++|+.++..++...+. ...+|...+.+....| +++.|..+|++++...|+...+|...+......|+++.|..+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5566677777666654444 5678888899988888 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013659 240 YKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 240 ~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
|++++.. .++.+ ..+..........|+.+.....+.+
T Consensus 274 ~~~al~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 274 YRRALEL--QPGYI-RSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHH--CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHh--CCCcH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999983 33333 4555555666666775554443433
No 26
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.42 E-value=1.3e-12 Score=104.64 Aligned_cols=103 Identities=14% Similarity=0.229 Sum_probs=90.7
Q ss_pred hHhHHHHHHHHHHHHhcCCh------hhHHHHHHHHHhcCCCC--------HHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013659 20 SEKFQQYMIYLKYEQSSGDP------GRVQLLYERAITDFPVS--------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~------~~~~~~yERal~~~p~~--------~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
+.+++.|..|+..+++.|++ ++++.+|+||+...|.. ..||+.|+.|.. .++++.++.+|+.|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e--i~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA--IQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH--HHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 44899999999999999999 99999999999988753 469999999854 368899999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
.+|..-..+|++|+. +|..+++...++.|+.+|+..++.
T Consensus 88 ~~hKkFAKiwi~~Aq-FEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQ-FELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHhccCCC
Confidence 988777999999999 566689999999999999987654
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=104.73 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=48.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++++|||||||+++|+++|+++|++||.|.+++|+.|+.+|+++|||||
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV 66 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEE
Confidence 356789999999999999999999999999999999999999999999997
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=2e-10 Score=103.55 Aligned_cols=204 Identities=12% Similarity=0.022 Sum_probs=159.5
Q ss_pred ChHh-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHH
Q 013659 19 DSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (438)
Q Consensus 19 ~~~~-~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~ 97 (438)
++.. ...|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+..+|++++...|....+|..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 4555 67899999988999999999999999999999999999999887764 456788999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhh
Q 013659 98 SLLSLERSRASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (438)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~ral~--~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~ 175 (438)
++..+.. .+..+++..+|++++. ..+.....+..+-..+ ... .+++.....|.+++..
T Consensus 111 la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~---------g~~~~A~~~~~~~~~~----- 170 (252)
T 2ho1_A 111 YGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS-----LQM---------KKPAQAKEYFEKSLRL----- 170 (252)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-----HHT---------TCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH-----HHc---------CCHHHHHHHHHHHHhc-----
Confidence 8875554 7889999999999998 3333222222211111 011 3444444555555443
Q ss_pred cCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+....++...+.+....| +++.|..+|++++...|+....|...+.+....|+++.|..+|++++..
T Consensus 171 --~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 171 --NRNQPSVALEMADLLYKER-EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp --CSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444567888888888888 8999999999999999998999989999999999999999999999973
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=6.9e-10 Score=99.88 Aligned_cols=224 Identities=6% Similarity=-0.098 Sum_probs=171.4
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC-------HH
Q 013659 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GE 93 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~-------~~ 93 (438)
...+.|...+......|+++.+..+|++++... .++.+|...+..+.. .++.+.+...|++++...|.. ..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYE-KGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 456788888888899999999999999999999 899999998887764 456788999999999987765 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhh
Q 013659 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (438)
Q Consensus 94 lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~ 173 (438)
+|......+. ..+..+.+...|++++...+.. . ++. ....+++|+..+..
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-~----~~~------------------------~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTA-D----ILT------------------------KLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCH-H----HHH------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCchh-H----HHH------------------------HHhHHHHHHHHHHH
Confidence 7877776444 4788899999999999765441 1 110 01223445555554
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
.+...+....+|...+.+....| +++.|...|++++...|+...+|...+......|+++.|..+|++++.. .++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~ 207 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFV 207 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHcCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHH
Confidence 44445666678888999988888 8999999999999999999999999999999999999999999999983 33333
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 254 EDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
..+......-...|+.+.....+.++
T Consensus 208 -~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 208 -RAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555555666667766554444444
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=8.4e-11 Score=113.59 Aligned_cols=203 Identities=8% Similarity=-0.033 Sum_probs=158.8
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013659 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
+++...+|..........|++++++.+|+++|..+|.+...|......+...+.+.+.+...|++||...|....+|...
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 56788899999999999999999999999999999999999999998887654447889999999999999999999998
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCC
Q 013659 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (438)
...+.. .+..+++...|++|+...+.....+..+-..+ .++ .++......|++++. ..
T Consensus 173 g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~-----~~~---------g~~~eAl~~~~~al~-------l~ 230 (382)
T 2h6f_A 173 RVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVI-----QEF---------KLWDNELQYVDQLLK-------ED 230 (382)
T ss_dssp HHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH-----HHH---------TCCTTHHHHHHHHHH-------HC
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH-----HHc---------CChHHHHHHHHHHHH-------hC
Confidence 876554 67788899999999988777554443322211 111 122222344444444 35
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHhcc--cHHHHHHHHHHH
Q 013659 179 DGLLRLYAYWAHLEQSMGKDMVSA-----RGVWERLLKISGAMLEAWQSYISMEIELD--HINEARSIYKRC 243 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~a-----r~i~e~~l~~~~~~~~~W~~y~~~e~~~g--~~~~ar~i~~ra 243 (438)
+.....|...+.+...+++..+.| ...|++++...|++...|.....+....| +++.|...+.++
T Consensus 231 P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 231 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 666778999888888855454666 58999999999999999998888887777 688999888887
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=5e-10 Score=98.55 Aligned_cols=202 Identities=13% Similarity=0.055 Sum_probs=155.4
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHH
Q 013659 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~ 99 (438)
+.+...|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+..+|++++...|....+|...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45778899999999999999999999999999999999999998887664 45678899999999999999999999888
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhc
Q 013659 100 LSLERSR-ASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (438)
Q Consensus 100 ~~le~~~-~~~~~~~~i~~ral~--~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~ 176 (438)
..+. .. +..+.+..+|++++. ..+.....+..+-..+ ... .++......|.+++..
T Consensus 84 ~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~---------~~~~~A~~~~~~~~~~------ 142 (225)
T 2vq2_A 84 WFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS-----AKQ---------GQFGLAEAYLKRSLAA------ 142 (225)
T ss_dssp HHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH-----HHT---------TCHHHHHHHHHHHHHH------
T ss_pred HHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH-----HHc---------CCHHHHHHHHHHHHHh------
Confidence 7554 46 889999999999998 2222222222211111 011 3444444555555443
Q ss_pred CCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+.....|...+.+....| +++.|..+|++++...| +....|...+.+....|+.+.+..+++.++.
T Consensus 143 -~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 143 -QPQFPPAFKELARTKMLAG-QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp -STTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444567788888888888 89999999999999988 8888887888888888999999999998876
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.35 E-value=4.7e-10 Score=104.83 Aligned_cols=217 Identities=10% Similarity=0.010 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 013659 57 SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136 (438)
Q Consensus 57 ~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~ 136 (438)
...|...+..+... ++.+.+..+|++++...|....+|......+. ..+..+.+...|++++...+.....+..+-..
T Consensus 21 ~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKL-ANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556555555533 46778999999999999999999998877554 47889999999999998766543333222111
Q ss_pred H---------HHHHHHhhhc--ccccchhhcH------------------HHHHHHHHHHHHHHhhhhcCCchhHHHHHH
Q 013659 137 R---------IDGLRRRILF--SGEVEGVLDY------------------SLIRETFQRASDYLSEQMKNTDGLLRLYAY 187 (438)
Q Consensus 137 ~---------~~~l~rr~~~--~~~~~~~~~~------------------~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~ 187 (438)
+ ...+. ++.. .......... -...+-+++|+.++...+...+....++..
T Consensus 99 ~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLR-AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHH-HHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 1 11111 1111 0000000000 111234566666666655545555678888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013659 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (438)
.+.+....| +++.|..+|++++...|+...+|...+......|+++.|..+|++++.. .++.+ ..+..........
T Consensus 178 la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 178 LGVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYV-RVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHT
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH-HHHHHHHHHHHHh
Confidence 898888888 8999999999999999999999999999999999999999999999983 33333 4555666666677
Q ss_pred CCHHHHHHHHHhh
Q 013659 268 GTLEDFDHSVQKV 280 (438)
Q Consensus 268 G~~~~~~~a~~~~ 280 (438)
|+.+.....+.++
T Consensus 254 g~~~~A~~~~~~a 266 (327)
T 3cv0_A 254 SQYDLAAKQLVRA 266 (327)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 8766554444443
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.35 E-value=5.3e-11 Score=106.46 Aligned_cols=213 Identities=11% Similarity=0.034 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|+++.+..+|++++...|.+..+|...+..+.. .+..+.+..+|++++...|....+|...+..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~- 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSAATAYYGAGNVYV- 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-
Confidence 566666666778999999999999999999999999999887764 456788999999999999999999998887555
Q ss_pred ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHH
Q 013659 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (438)
..+..+.+..+|++++...+.....+..+-..+. .. .++......|++++.. .+....+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~---------~~~~~A~~~~~~~~~~-------~~~~~~~ 161 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-----KL---------EQPKLALPYLQRAVEL-------NENDTEA 161 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-----HT---------SCHHHHHHHHHHHHHH-------CTTCHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hh---------ccHHHHHHHHHHHHHh-------CCccHHH
Confidence 4788999999999999876654333222211110 11 3444445555555543 3444567
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 013659 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE 264 (438)
+...+.+....| +++.|..+|++++...|+...+|...+.+....|+++.|..+|++++.. .++.+ ..+.....+.
T Consensus 162 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~-~~~~~~~~l~ 237 (243)
T 2q7f_A 162 RFQFGMCLANEG-MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM-LALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH-HHHHHHTC--
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH-HHHHHHHHHH
Confidence 888888888889 8999999999999999999999999999999999999999999999983 33333 4444443333
No 34
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=2.9e-10 Score=97.48 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013659 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
+...+|...+......|+++.|...|+++|..+|.++..|...+..+.. .+..+.+...+.+++...|.....|.....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3556898899988899999999999999999999999999999887664 456778999999999999998888887765
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch
Q 013659 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (438)
Q Consensus 101 ~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (438)
.+.. .+..+.+...+.+++... +.
T Consensus 82 ~~~~-~~~~~~a~~~~~~a~~~~-------------------------------------------------------~~ 105 (184)
T 3vtx_A 82 ANFM-IDEKQAAIDALQRAIALN-------------------------------------------------------TV 105 (184)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHC-------------------------------------------------------TT
T ss_pred HHHH-cCCHHHHHHHHHHHHHhC-------------------------------------------------------cc
Confidence 4433 455555555555554322 22
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....|...+.+....| +++.|.+.|+++++.+|++..+|..........|+++.|...|++|+.
T Consensus 106 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2335555666667777 899999999999999999999999999888889999999999999987
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=2.2e-10 Score=110.64 Aligned_cols=220 Identities=7% Similarity=-0.049 Sum_probs=164.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~-~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
+|...|+.+|..+|. +..+|...+......|. ++.++..|++||..+|.+..+|......+... +..+.+...|
T Consensus 115 ~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~-g~~~eAl~~~ 189 (382)
T 2h6f_A 115 RAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPSQELEFI 189 (382)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHH
T ss_pred HHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCHHHHHHHH
Confidence 466788889988886 88899999999999996 99999999999999999999999999877654 5667899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhc-HHHH
Q 013659 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD-YSLI 160 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~-~~~~ 160 (438)
++||...|.....|......+.. .+..+++...|++++...+.....+..+...+. ++... .+ .. +...
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~-----~l~~~--~~--eA~~~~e 259 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS-----NTTGY--ND--RAVLERE 259 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HTTCS--CS--HHHHHHH
T ss_pred HHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HhcCc--ch--HHHHHHH
Confidence 99999999999999998775554 567788999999999887775544443332221 11100 00 00 0111
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc--------
Q 013659 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK-DMVSARGVWERLLKISGAMLEAWQSYISMEIELD-------- 231 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~-~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g-------- 231 (438)
...|.+|+. ..+.....|...+.+....|. +++.|.+.++.+ ...|+...++...+++....|
T Consensus 260 l~~~~~Al~-------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 260 VQYTLEMIK-------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHH-------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHH-------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 233444444 355566788888887766552 478899999887 778888888888887776653
Q ss_pred c-HHHHHHHHHHH-Hh
Q 013659 232 H-INEARSIYKRC-YS 245 (438)
Q Consensus 232 ~-~~~ar~i~~ra-l~ 245 (438)
+ ++.|..+|+++ +.
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3 58999999999 76
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=4.9e-10 Score=102.13 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=160.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...+..++.+...|...+......|+++.+..+|++++...|.++.+|...+..+.. .+..+.+...|+
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 3556777788765433356778999999999999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|....+|......+.. .+..+++...|++++...+......+ +...+ . .. .++.....
T Consensus 102 ~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~-~---~~---------~~~~~A~~ 165 (275)
T 1xnf_A 102 SVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRSL--WLYLA-E---QK---------LDEKQAKE 165 (275)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHH-H---HH---------HCHHHHHH
T ss_pred HHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCChHHHH--HHHHH-H---Hh---------cCHHHHHH
Confidence 9999999999999998875554 78899999999999987665432221 11111 0 00 23334444
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHhcccHHHHHH
Q 013659 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA----MLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~----~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
.|.+++.. .+.....|. .+.+....+ +.+.|...+++++...|. ...+|...+.+....|+++.|..
T Consensus 166 ~~~~~~~~-------~~~~~~~~~-~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 166 VLKQHFEK-------SDKEQWGWN-IVEFYLGNI-SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp HHHHHHHH-------SCCCSTHHH-HHHHHTTSS-CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhc-------CCcchHHHH-HHHHHHHhc-CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence 44444432 222111232 344444555 678999999999977553 36789999999999999999999
Q ss_pred HHHHHHhc
Q 013659 239 IYKRCYSK 246 (438)
Q Consensus 239 i~~ral~~ 246 (438)
.|++++..
T Consensus 237 ~~~~al~~ 244 (275)
T 1xnf_A 237 LFKLAVAN 244 (275)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99999984
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.33 E-value=6.5e-13 Score=101.14 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=44.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCC--eeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGG--VSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~~fv 438 (438)
.||||+|||+++|+++|+++|++||. |.+|++++|+.||++||||||
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV 58 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFV 58 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEE
Confidence 39999999999999999999999995 679999999999999999997
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=101.46 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=46.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+|+|+.|+.||+++|||||
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV 53 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARV 53 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEE
Confidence 3469999999999999999999999999999999999999999999997
No 39
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.31 E-value=2.7e-12 Score=96.38 Aligned_cols=50 Identities=28% Similarity=0.453 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 58 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 58 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 40
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-12 Score=99.96 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=45.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|++||+|.+|+|+.++. |+++|||||
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV 57 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFV 57 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEE
Confidence 3457999999999999999999999999999999999975 999999997
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-13 Score=101.21 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=45.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCC-CeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.|+.||++||||||
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV 49 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFV 49 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEE
Confidence 4899999999999999999999999 8999999999999999999997
No 42
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.30 E-value=2.4e-09 Score=107.58 Aligned_cols=268 Identities=9% Similarity=-0.048 Sum_probs=162.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|...+......|+++.+...|++++..+|.++..|...+..+... +..+.+...|+
T Consensus 43 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~ 117 (537)
T 3fp2_A 43 EAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-GNFTDAMFDLS 117 (537)
T ss_dssp -CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 567888999988875 6778888888888899999999999999999999999999888876644 45566666664
Q ss_pred HHHHcCCCCHHHH-------------------------------------------------------------------
Q 013659 83 RATKNCPWVGELW------------------------------------------------------------------- 95 (438)
Q Consensus 83 rAl~~~p~~~~lW------------------------------------------------------------------- 95 (438)
++...|.....|
T Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp -HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred -HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 555444322211
Q ss_pred -HHHHHH-------HHHccCCHHHHHHHHHHHHhCCcccHHHHH---HHHHHHH-------------HHHHHhhhccccc
Q 013659 96 -VRSLLS-------LERSRASEEEISTVFEKSLLCAFSTFEEYL---DLFLTRI-------------DGLRRRILFSGEV 151 (438)
Q Consensus 96 -~~y~~~-------le~~~~~~~~~~~i~~ral~~~~~~~~~~~---~~~~~~~-------------~~l~rr~~~~~~~ 151 (438)
...... +....+..+.+..+|++++...+....... ..+.... ..+.+-+......
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~ 276 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc
Confidence 111100 000112456788888888876655322211 1110000 0000000000000
Q ss_pred chhhcHHHH---HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013659 152 EGVLDYSLI---RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 152 ~~~~~~~~~---r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
..+..+..+ .+-++.|+.++...+...+....+|...+.+....| +++.|...|++++...|+...+|...+....
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 000000000 011244555555444434555667888888888888 8999999999999999988889999999998
Q ss_pred hcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
..|+++.|..+|++++.. .++.+ .++..+.......|+.+.....+.++
T Consensus 356 ~~g~~~~A~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLK--FPTLP-EVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999974 33333 45666666667778866555444443
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.29 E-value=3.2e-10 Score=101.31 Aligned_cols=201 Identities=9% Similarity=0.031 Sum_probs=150.5
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+..+|+
T Consensus 41 ~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 115 (243)
T 2q7f_A 41 KAAEAFTKAIEENKE----DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFE 115 (243)
T ss_dssp -CCTTHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 456678888887775 677899999988999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|....+|..++..+. ..+..+.+...|++++...+.....+..+-..+. .. .++.....
T Consensus 116 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~---------~~~~~A~~ 180 (243)
T 2q7f_A 116 KALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-----NE---------GMLDEALS 180 (243)
T ss_dssp HHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HH---------TCCHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-----Hc---------CCHHHHHH
Confidence 999999999999999887555 4788999999999999766554333222211110 11 23334444
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc
Q 013659 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g 231 (438)
.|.+++.. .+....+|...+.+....| +++.|...|++++...|++...|..+..+....|
T Consensus 181 ~~~~~~~~-------~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 181 QFAAVTEQ-------DPGHADAFYNAGVTYAYKE-NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHh-------CcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 45554443 3444568888899988888 8999999999999999999988877766665443
No 44
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.7e-12 Score=100.63 Aligned_cols=47 Identities=11% Similarity=0.294 Sum_probs=46.0
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNI----NLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||||| |+.+++.+|+.+|+.||+|.++.++.|+.||+|+|||||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfV 53 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLI 53 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEE
Confidence 58999999 999999999999999999999999999999999999997
No 45
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.27 E-value=4.2e-12 Score=99.67 Aligned_cols=51 Identities=27% Similarity=0.504 Sum_probs=45.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.++|||||||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV 72 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 72 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEE
Confidence 356679999999999999999999999999999999999889999999997
No 46
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.26 E-value=4.9e-12 Score=102.86 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=46.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeE--EEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|++||.|.. |+|+.|+.+|++||||||
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV 72 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFI 72 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEE
Confidence 45579999999999999999999999999977 999999889999999997
No 47
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.26 E-value=1.9e-11 Score=97.48 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=48.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+.++|||+|||+++|+++|+++|+.||.|.+++|+.++.+|+++|||||
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 87 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFV 87 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEE
Confidence 3456789999999999999999999999999999999999889999999997
No 48
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=8.7e-12 Score=93.12 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=47.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 52 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 52 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEE
Confidence 34569999999999999999999999999999999999889999999997
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.24 E-value=8e-10 Score=100.68 Aligned_cols=199 Identities=8% Similarity=0.014 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC----HHHHHHH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----GELWVRS 98 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~----~~lW~~y 98 (438)
.+.+..++......|+++.+..+|++++...|.+...|...+.... ..++.+.+...|++++. .|.. ...|...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3467788888889999999999999999999999999999988665 44577889999999999 4432 3457777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCC
Q 013659 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (438)
...+. ..+..+.+...|++++...+.....+..+-..+. ..+-+++|+.++..++...
T Consensus 81 g~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 81 GKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY---------------------NKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHGGGCCSS
T ss_pred HHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHhhcC
Confidence 66444 4788999999999999876654333322221111 1133566777777776656
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---HHHHHHHHHHHHhc
Q 013659 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH---INEARSIYKRCYSK 246 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~---~~~ar~i~~ral~~ 246 (438)
+....+|...+......+ +++.|...|++++...|+....|..........|+ ++.|...|++++..
T Consensus 139 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 666677877774444455 89999999999999999988888777777777777 88899999999974
No 50
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=96.10 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 62 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFV 62 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEE
Confidence 45679999999999999999999999999999999999889999999997
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.24 E-value=1.3e-09 Score=99.30 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=165.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH----HHHHHHHHHHhhccchhHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD----LWLDYTQYLDKTLKVGNVVR 78 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~----lW~~Y~~~l~~~~~~~~~~~ 78 (438)
++...|+.+|...|. +...|...+......|+++.+...|++++. .|.++. .|...+..... .+..+.+.
T Consensus 21 ~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~ 94 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQDSLAI 94 (272)
T ss_dssp HHHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccHHHHH
Confidence 467788999988875 555788888888899999999999999999 554444 48888876664 45678899
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHH-HHHHHHHHHhhhcccccchhhcH
Q 013659 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSGEVEGVLDY 157 (438)
Q Consensus 79 ~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~-~~~~~~l~rr~~~~~~~~~~~~~ 157 (438)
..|++++...|....+|......+. ..++.+.+...|++++...+.....+..+- ..+. . .++
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~------------~~~ 158 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY---N------------KEY 158 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH---T------------TCH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH---H------------HHH
Confidence 9999999999999999999887554 478899999999999988766544443332 2111 0 244
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhc---cc-----hHHHHHHHHHH
Q 013659 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKIS---GA-----MLEAWQSYISM 226 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~e~~l~~~---~~-----~~~~W~~y~~~ 226 (438)
......|++++.. .+.....+...+.+....+ + .+.|...|++++... |+ ...+|.....+
T Consensus 159 ~~A~~~~~~a~~~-------~p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 159 VKADSSFVKVLEL-------KPNIYIGYLWRARANAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHS-TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------CccchHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 4455555555543 3444556777777776666 5 778999999999884 44 23577778888
Q ss_pred HHhcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 013659 227 EIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (438)
Q Consensus 227 e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~ 260 (438)
....|+++.|...|++++.. .++.+ ..++..
T Consensus 231 ~~~~~~~~~A~~~~~~al~~--~p~~~-~a~~~l 261 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILAL--DPTNK-KAIDGL 261 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CccHH-HHHHHh
Confidence 88899999999999999983 34433 444433
No 52
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=3e-09 Score=106.00 Aligned_cols=249 Identities=9% Similarity=0.046 Sum_probs=176.9
Q ss_pred hhhHhHHHHHh-----c--CCCC---ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Q 013659 3 NARAHLEEQIS-----R--QDLS---DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK 72 (438)
Q Consensus 3 ~~R~~~E~~l~-----~--~~~~---~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~ 72 (438)
++...|+.++. . .|.. ++.....|...+......|+++.+..+|++++...|. ..+|...+..+.. .+
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~-~~ 284 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD-RN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH-CC
Confidence 35566777776 3 3321 1456678988999889999999999999999999999 9999988887664 45
Q ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccc
Q 013659 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
..+.+...|++++...|....+|......+.. .+..+.+...|++++...+.....+..+-..+. .
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~-------- 350 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAY-----R-------- 350 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-----T--------
T ss_pred CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-----H--------
Confidence 66779999999999999999999888775544 677889999999999876654332222211110 0
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH------HHHHHHHH
Q 013659 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE------AWQSYISM 226 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~------~W~~y~~~ 226 (438)
..++......|.+++.. .+....+|...+.+....| +++.|..+|++++...|+... .|...+..
T Consensus 351 -~~~~~~A~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 351 -ENKFDDCETLFSEAKRK-------FPEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp -TTCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHH-------cccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 13444445555555443 2333457777888888888 899999999999988766543 78888888
Q ss_pred HHh---cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013659 227 EIE---LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 227 e~~---~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
... .|+++.|...|++++.. .++. ...+..........|+.+.....+.+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKL--DPRS-EQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHh--Cccc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888 88999999999999873 3333 34555566666667776554444433
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.24 E-value=4.1e-12 Score=96.05 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCC--CeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+|||||||+++|+++|+++|+.|| .|.+++++.++.+|+++|||||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV 50 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 50 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEE
Confidence 4899999999999999999999999 9999999999889999999997
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.23 E-value=2.4e-12 Score=99.42 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=46.7
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINL------KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+ ++++++|+++|++||.|.+++|+.++.||+++|||||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV 59 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEE
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEE
Confidence 456999999999 9999999999999999999999999989999999997
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=1.1e-09 Score=109.02 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~-~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
+...|...+......|++ +.+...|++||..+|.+...|......+... ++.+.+...|++|+...|. ...|..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 667788888888888888 8999999999999999999998888776644 4667788999999998887 677777666
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHhCCcccHH
Q 013659 101 SLERSR---------ASEEEISTVFEKSLLCAFSTFE 128 (438)
Q Consensus 101 ~le~~~---------~~~~~~~~i~~ral~~~~~~~~ 128 (438)
.+. .. +..+++...|++|+...+....
T Consensus 179 ~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 179 VLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 443 34 5677788888888876655433
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=96.70 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=48.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
......++|||+|||+.+|+++|+.+|+.||.|.+++++.++.+|+++|||||
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 73 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 73 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 33456689999999999999999999999999999999999889999999997
No 57
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.1e-11 Score=98.26 Aligned_cols=50 Identities=30% Similarity=0.492 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 72 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 72 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 58
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=5.9e-12 Score=92.11 Aligned_cols=47 Identities=30% Similarity=0.575 Sum_probs=45.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 47 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 47 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEE
Confidence 48999999999999999999999999999999999889999999997
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.4e-11 Score=93.61 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=47.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 57 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 57 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEE
Confidence 34569999999999999999999999999999999999889999999997
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.22 E-value=1.9e-11 Score=94.13 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=47.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeE--------EEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|+.||.|.+ ++++.++.+|+++|||||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV 68 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 68 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEE
Confidence 44579999999999999999999999999999 999999889999999997
No 61
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.2e-11 Score=98.36 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 74 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 74 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEE
Confidence 34579999999999999999999999999999999999889999999997
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.21 E-value=1.1e-11 Score=96.83 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 60 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFL 60 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 63
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=2.4e-11 Score=95.71 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 62 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA 62 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 64
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.21 E-value=4.3e-09 Score=105.66 Aligned_cols=221 Identities=11% Similarity=0.028 Sum_probs=167.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. ...|...+......|+++.+..+|++++...|.++.+|...+..+... +..+.+...|+
T Consensus 261 ~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 334 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL-QDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHCCC-----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH
Confidence 456778888877663 567888888778889999999999999999999999999999877644 56778999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|....+|......+. ..+..+.+..+|++++...+.....+..+-..+ ... .++.....
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~---------g~~~~A~~ 399 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLY-KQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL-----TDR---------GDFDTAIK 399 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-----HHT---------TCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHh---------CCHHHHHH
Confidence 999999998899988877554 478889999999999977655433222221111 111 45666667
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc
Q 013659 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM----------GKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~----------~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~ 232 (438)
.|++++....... .....+..+...+.+.... | +++.|...|++++...|+...+|...+.+....|+
T Consensus 400 ~~~~a~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 400 QYDIAKRLEEVQE-KIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHCS-SCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcch-hhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 7777776543221 1111122234445555555 7 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 013659 233 INEARSIYKRCYSK 246 (438)
Q Consensus 233 ~~~ar~i~~ral~~ 246 (438)
++.|...|++++..
T Consensus 478 ~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 478 IDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999983
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.20 E-value=2.9e-11 Score=94.18 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=46.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++ +|+++|||||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV 61 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFV 61 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEE
Confidence 346799999999999999999999999999999999996 8999999997
No 66
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.20 E-value=3.6e-09 Score=93.64 Aligned_cols=200 Identities=12% Similarity=0.031 Sum_probs=142.4
Q ss_pred CCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHH
Q 013659 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (438)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~ 132 (438)
.|.++..|......+... +..+.+...|++++...|.....|......+.. .+..+++...|++++...+.....+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYAL-GRYDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 378889999998877654 467789999999999999999999998875554 788999999999999887765544443
Q ss_pred HHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 133 ~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
+-..+...- +. . .+.....+-+++|+..+.+++...|.....|...+.+....| +++.|...|++++..
T Consensus 79 lg~~~~~~~-~~---~------~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 79 LSEAYVALY-RQ---A------EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG-ERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHH-HT---C------SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hh---h------hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 332221110 00 0 001112245566666666655545666778999999999999 899999999999999
Q ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCC
Q 013659 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (438)
Q Consensus 213 ~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~ 269 (438)
. ++..+|..........|+++.|...|++++.. .++.+ .++......-...|+
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~-~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDL-DLRVRYASALLLKGK 200 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH-HHHHHHHHHHTC---
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHHccC
Confidence 9 88999999999999999999999999999983 44444 333333333333343
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=1.1e-09 Score=114.27 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=140.8
Q ss_pred CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHH
Q 013659 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (438)
Q Consensus 18 ~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~ 97 (438)
+.|++.++|...+......|+++.|+..|++||..+|.+...|......+... +..+.+...|++|++..|.....|..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~-g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34678999999999999999999999999999999999999999999887754 56788999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013659 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
+...+.. .+..+++...|++|+...+.
T Consensus 83 Lg~~l~~-~g~~~~A~~~~~kAl~l~P~---------------------------------------------------- 109 (723)
T 4gyw_A 83 MGNTLKE-MQDVQGALQCYTRAIQINPA---------------------------------------------------- 109 (723)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHCTT----------------------------------------------------
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCCC----------------------------------------------------
Confidence 8775554 67778888888877754332
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....|...+.++...| ++++|...|+++++..|+....|..++......|+++.|...|++++.
T Consensus 110 ---~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 110 ---FADAHSNLASIHKDSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ---CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 2234555566666777 899999999999999999888888888888888988888888888886
No 68
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.20 E-value=1.7e-11 Score=91.06 Aligned_cols=47 Identities=30% Similarity=0.376 Sum_probs=45.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 48 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 48 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEE
Confidence 58999999999999999999999999999999999889999999997
No 69
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.8e-11 Score=94.27 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 62 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 62 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 70
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.9e-11 Score=95.50 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=47.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+.+|+.||.|.+|+++.++.+|+++|||||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 70 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 70 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 71
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=3.3e-11 Score=93.49 Aligned_cols=50 Identities=24% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 60 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.1e-09 Score=96.61 Aligned_cols=207 Identities=11% Similarity=-0.001 Sum_probs=156.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhhccchh
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKVGN 75 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~-------~~lW~~Y~~~l~~~~~~~~ 75 (438)
++...|+.+|... . +...|...+......|+++.+..+|++++...|.+ ..+|...+..+.. .++.+
T Consensus 23 ~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 96 (258)
T 3uq3_A 23 EAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK-LGDLK 96 (258)
T ss_dssp HHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-cccHH
Confidence 4667788888776 3 56688888888899999999999999999988766 6888888876664 45678
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 013659 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (438)
Q Consensus 76 ~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (438)
.+...|++++...|. ..++.. .+..+.+...|++++...+.....+..+-..+. .. .
T Consensus 97 ~A~~~~~~a~~~~~~-~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~ 153 (258)
T 3uq3_A 97 KTIEYYQKSLTEHRT-ADILTK--------LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-----TK---------S 153 (258)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHH--------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----HT---------T
T ss_pred HHHHHHHHHHhcCch-hHHHHH--------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-----Hh---------c
Confidence 899999999999886 233222 234677888999999876553333222211110 11 3
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHH
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ 235 (438)
++......|++++.. .+....+|...+.+....| +++.|...|++++...|+....|..........|+++.
T Consensus 154 ~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR-------APEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 444445555555543 3444568888898888888 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 013659 236 ARSIYKRCYSK 246 (438)
Q Consensus 236 ar~i~~ral~~ 246 (438)
|...|++++..
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999973
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=91.94 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=46.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||.++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 53 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFV 53 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEE
Confidence 34579999999999999999999999999999999999889999999997
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.19 E-value=1.7e-11 Score=91.48 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 54 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 54 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 75
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.4e-11 Score=93.59 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=45.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeE-EEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|.+ |+|+.+ .+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV 62 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFV 62 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEE
Confidence 45679999999999999999999999999987 899998 79999999997
No 76
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.6e-11 Score=91.79 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=46.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 52 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 52 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEE
Confidence 4569999999999999999999999999999999999889999999997
No 77
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.7e-11 Score=94.38 Aligned_cols=50 Identities=32% Similarity=0.441 Sum_probs=47.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV 63 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 63 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 78
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4.9e-11 Score=94.71 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=47.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 64 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 64 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEE
Confidence 345679999999999999999999999999999999999889999999997
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.18 E-value=3.2e-11 Score=95.63 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 72 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 72 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEE
Confidence 45679999999999999999999999999999999999889999999997
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.18 E-value=3e-11 Score=93.04 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+++|+.++.+|+++|||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 55 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 81
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.7e-11 Score=90.96 Aligned_cols=50 Identities=36% Similarity=0.520 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+++++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 63 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 63 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEE
Confidence 45579999999999999999999999999999999999889999999997
No 82
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.9e-11 Score=93.86 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=47.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 62 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 62 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.3e-11 Score=93.63 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCee-EEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS-SIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+++|++||.|. +++++.++.+|+++|||||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV 57 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFV 57 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEE
Confidence 3457999999999999999999999999999 9999999889999999997
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.18 E-value=1.4e-11 Score=89.68 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=44.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+|||+|||+++|+++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 46 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 46 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEE
Confidence 5899999999999999999999999999999999889999999997
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.18 E-value=2.3e-11 Score=95.65 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+.+|+++|+.+|+.||.|.+++++.++.+|+++|||||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 73 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 73 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 86
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=102.62 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=45.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCC--CeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||||||+++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV 104 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEV 104 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEE
Confidence 3567999999999999999999999999 9999999999999999999997
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.8e-11 Score=95.80 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=46.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCe-eEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGV-SSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV 62 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALV 62 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEE
Confidence 456799999999999999999999999999 899999997 9999999997
No 88
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.9e-11 Score=92.00 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=46.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+++++.++ +|+++|||||
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV 63 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYV 63 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEE
Confidence 456799999999999999999999999999999999996 9999999997
No 89
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.17 E-value=1.4e-08 Score=94.32 Aligned_cols=219 Identities=11% Similarity=-0.004 Sum_probs=152.6
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~--~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
..|+.+|......++........++.+....|+.+.+...|++.+.. +|.++.+|...+..+... +..+.+..+|++
T Consensus 48 g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~ 126 (291)
T 3mkr_A 48 RKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ 126 (291)
T ss_dssp TCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT
T ss_pred CCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC
Confidence 34666665443334446777788888888888899999999998876 589999888887766644 566778888877
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHH
Q 013659 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (438)
|.+..+|...+..+.. .+..+++...|++++...+.... ..+...++.... . ...+......
T Consensus 127 -----~~~~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~~~--~~l~~a~~~l~~-~---------~~~~~eA~~~ 188 (291)
T 3mkr_A 127 -----GDSLECMAMTVQILLK-LDRLDLARKELKKMQDQDEDATL--TQLATAWVSLAA-G---------GEKLQDAYYI 188 (291)
T ss_dssp -----CCSHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHH-C---------TTHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcCcHH--HHHHHHHHHHHh-C---------chHHHHHHHH
Confidence 7788888887775554 67788999999998876655321 111112211110 0 0223333444
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHH-HHHHHHHH
Q 013659 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN-EARSIYKR 242 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~-~ar~i~~r 242 (438)
|++++. ..+....+|...+.+....| +++.|...|++++..+|++.+.|..++.+....|+.. .+..++++
T Consensus 189 ~~~~l~-------~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 189 FQEMAD-------KCSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHH-------HSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHH-------hCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444443 34555667888888888888 8999999999999999999999999998888888765 47788899
Q ss_pred HHhcccCCCCh
Q 013659 243 CYSKRFTGTGS 253 (438)
Q Consensus 243 al~~~~~~~~~ 253 (438)
++.. .++.|
T Consensus 261 ~~~~--~P~~~ 269 (291)
T 3mkr_A 261 LKDA--HRSHP 269 (291)
T ss_dssp HHHH--CTTCH
T ss_pred HHHh--CCCCh
Confidence 8873 44444
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.17 E-value=4.1e-11 Score=95.02 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=47.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+.+|+++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 62 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 62 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 91
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.6e-09 Score=106.46 Aligned_cols=221 Identities=11% Similarity=0.021 Sum_probs=170.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. ...|...+......|+++.+..+|++++...|.+..+|...+..+... +..+.+...|+
T Consensus 255 ~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 328 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL-QNYDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 456678888877763 567888888888999999999999999999999999999998877644 56788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|....+|......+. ..+..+.+..+|++++...+.....+..+-..+ .+. .++.....
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-----~~~---------~~~~~A~~ 393 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAY-RENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL-----TDK---------NDFDKALK 393 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTT-TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH-----HHT---------TCHHHHHH
T ss_pred HHHHhChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH-----HHC---------CCHHHHHH
Confidence 999999998899988777444 478899999999999976554333222211111 011 45556666
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHH
Q 013659 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~---~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i 239 (438)
.|++++....... ........|...+.+... .| +++.|...|++++...|+....|...+.+....|+++.|...
T Consensus 394 ~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 394 QYDLAIELENKLD-GIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHTSS-SCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6777666432210 001113377788888888 77 899999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 013659 240 YKRCYSK 246 (438)
Q Consensus 240 ~~ral~~ 246 (438)
|++++..
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999983
No 92
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=4.5e-11 Score=93.45 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=47.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec-CCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD-KFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~~fv 438 (438)
...++|||+|||+.+|+++|+++|+.||.|.+|+|+.+ +.+|+++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV 63 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 63 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEE
Confidence 45679999999999999999999999999999999998 779999999997
No 93
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=1.2e-08 Score=100.93 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=161.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHH---HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchhH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYE---QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e---~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~ 76 (438)
+|...|+.+|...|. +.+.|..++... ...+..+.++..|++||..+|.+..+|..+...+... .+..+.
T Consensus 156 ~A~~~~~kal~~~p~----~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 156 RAKVCFEKALEKKPK----NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 467788888888775 666777776653 3456778899999999999999999888776544322 234567
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhc
Q 013659 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (438)
Q Consensus 77 ~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~ 156 (438)
+..+|++|+...|....+|......+. ..+..+.+...|++|+...+.....+..+-..+........... ......
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~--~~~~~~ 308 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR--ENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH--HHHHHH
Confidence 899999999999999999988776444 47888999999999998777655544433332221111000000 000112
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH---HHHHHHHHHHH-hccc
Q 013659 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEI-ELDH 232 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~---~~W~~y~~~e~-~~g~ 232 (438)
.......++.|+..+..+....+.....+...+.+....+ +++.|...|++++...++.. .++..|..+.. ..|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD-QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 2333455666766666655444444456777888888888 89999999999999866544 35666666543 5689
Q ss_pred HHHHHHHHHHHHhc
Q 013659 233 INEARSIYKRCYSK 246 (438)
Q Consensus 233 ~~~ar~i~~ral~~ 246 (438)
++.|...|.+|+..
T Consensus 388 ~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 388 EDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999973
No 94
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.17 E-value=3.2e-11 Score=92.26 Aligned_cols=48 Identities=27% Similarity=0.447 Sum_probs=46.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 49 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFI 49 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEE
Confidence 469999999999999999999999999999999999889999999997
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=5.2e-11 Score=92.40 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=46.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.|| |.+|+|+.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV 61 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYV 61 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEE
Confidence 3467999999999999999999999997 999999999889999999997
No 96
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.9e-11 Score=91.57 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=47.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 62 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 62 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEE
Confidence 34579999999999999999999999999999999999889999999997
No 97
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.16 E-value=8.7e-09 Score=92.66 Aligned_cols=190 Identities=15% Similarity=0.055 Sum_probs=144.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. +...|...+......|+++.+..+|++++...|.+..+|..++..+.. .+..+.+..+|+
T Consensus 55 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 129 (252)
T 2ho1_A 55 QAKVPLRKALEIDPS----SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLL 129 (252)
T ss_dssp GGHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 577889999988775 677898899888999999999999999999999999999999987764 456788999999
Q ss_pred HHHH--cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHH
Q 013659 83 RATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (438)
Q Consensus 83 rAl~--~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (438)
+++. ..|....+|..++..+. ..+..+++...|++++...+.....+..+-..+. .. .++
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-----~~---------g~~--- 191 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-----KE---------REY--- 191 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-----HT---------TCH---
T ss_pred HHHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-----Hc---------CCH---
Confidence 9999 77888888888877544 4688999999999999866554333322221110 11 233
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHH
Q 013659 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W 220 (438)
++|..++...+...+.....+...+.+....| +.+.|..++++++...|++..++
T Consensus 192 ----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 192 ----VPARQYYDLFAQGGGQNARSLLLGIRLAKVFE-DRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp ----HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSHHHH
T ss_pred ----HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCHHHH
Confidence 33444444443334445567778888888888 99999999999999999887655
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.16 E-value=3.7e-11 Score=90.53 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=46.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 53 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI 53 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEE
Confidence 469999999999999999999999999999999999889999999997
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=3.5e-11 Score=93.07 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||. .+|+|+.++ +|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV 60 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADV 60 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEE
Confidence 44579999999999999999999999995 599999996 9999999997
No 100
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.16 E-value=1.1e-11 Score=90.18 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=44.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+|||+|||+++|+++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 46 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEE
Confidence 6999999999999999999999999999999999889999999997
No 101
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.16 E-value=1.9e-11 Score=94.75 Aligned_cols=49 Identities=29% Similarity=0.533 Sum_probs=46.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+++++.++ +|+++|||||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV 55 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFV 55 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEE
Confidence 345799999999999999999999999999999999997 9999999997
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.15 E-value=5.6e-11 Score=96.10 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV 93 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 93 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 103
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.9e-11 Score=92.51 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=47.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEE-EEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSI-RILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.++ +|+.++.+|+++|||||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV 53 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFI 53 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEE
Confidence 345799999999999999999999999999999 99999889999999997
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=94.28 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecC-CCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK-FTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~~fv 438 (438)
...++|||||||+++++++|+++|+.|| |.+++|+.++ .+|+++|||||
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV 66 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 66 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEE
Confidence 4567999999999999999999999999 9999999997 58999999997
No 105
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.15 E-value=3.7e-11 Score=90.38 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|++||.|.+++|+.+ +||||||
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV 53 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFV 53 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEE
Confidence 34569999999999999999999999999999999875 7899997
No 106
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=7e-11 Score=91.82 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCC-CCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|+.|| |.+|+|+.++.+ |+++|||||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV 62 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 62 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEE
Confidence 457999999999999999999999999 999999999887 999999997
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.7e-11 Score=92.83 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=46.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcC-CCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSD-VGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+. ||.|.+|+|+.++ +|+++|||||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV 56 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFV 56 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEE
Confidence 34579999999999999999999999 9999999999997 9999999997
No 108
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.14 E-value=2.5e-11 Score=96.18 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=42.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||||||+++|+++|+++|+.||.|.+|+|+.++ +.+||||||
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV 50 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV 50 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEE
Confidence 4589999999999999999999999999999999984 458999997
No 109
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=4.5e-11 Score=92.59 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 59 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 59 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEE
Confidence 35579999999999999999999999999999999999889999999997
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=8.9e-11 Score=92.88 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=46.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.++|||+|||+++|+++|+.+|+.||.|.+++|+.++ +|+++|||||
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV 71 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFA 71 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEE
Confidence 3456799999999999999999999999999999999997 9999999997
No 111
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=5.7e-11 Score=91.96 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+++|+.++.+|+++|||||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 59 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 59 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 112
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=4.7e-11 Score=93.21 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=44.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.| .|.+|+|+.|+ +|+++|||||
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV 61 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLV 61 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEE
Confidence 446799999999999999999999999 89999999996 5999999997
No 113
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=8.4e-11 Score=92.87 Aligned_cols=50 Identities=32% Similarity=0.476 Sum_probs=47.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCee--------EEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS--------SIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|. .|+|+.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV 70 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 70 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEE
Confidence 4567999999999999999999999999999 6999999889999999997
No 114
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.7e-11 Score=94.00 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCC---CCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT---GKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|++||.|. +.++.++.+ |+++|||||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV 57 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFL 57 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEE
Confidence 4457999999999999999999999999999 888888776 899999997
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.12 E-value=4.4e-11 Score=88.34 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCC------CHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKA------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||||||+.+ |+++|+++|++||.|.+++++ +.+|+++|||||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV 52 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFL 52 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEE
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEE
Confidence 699999999999 779999999999999999988 368999999997
No 116
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=93.71 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=45.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCC---eeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV 60 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALI 60 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEE
Confidence 45679999999999999999999999998 89999999965 999999997
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=95.12 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=47.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 110 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 110 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 118
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.11 E-value=7e-11 Score=91.97 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=43.6
Q ss_pred CCCceEEEeCCCCCC------CHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKA------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+.+ |+++|+.+|++||.|.+++|+ +.+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV 66 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFL 66 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEE
Confidence 345799999999999 789999999999999999998 368999999997
No 119
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.11 E-value=4.9e-11 Score=96.97 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=45.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCC---eeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV 93 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFV 93 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEE
Confidence 45679999999999999999999999999 89999999965 999999997
No 120
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=4.3e-11 Score=91.95 Aligned_cols=50 Identities=30% Similarity=0.339 Sum_probs=45.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCC---CCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++. ||+++|||||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV 55 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 55 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEE
Confidence 4567999999999999999999999999999999999866 6699999997
No 121
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.11 E-value=9e-11 Score=93.09 Aligned_cols=49 Identities=24% Similarity=0.417 Sum_probs=46.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV 53 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFI 53 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEE
Confidence 345699999999999999999999999999999999996 9999999997
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.11 E-value=6.7e-11 Score=94.13 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=45.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCC---eeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV 66 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFV 66 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEE
Confidence 45679999999999999999999999999 89999999964 999999997
No 123
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.11 E-value=8.7e-11 Score=94.76 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.+|+++|||||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 69 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 69 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 124
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.10 E-value=1.1e-10 Score=93.26 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=43.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCee--EEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS--SIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++| .|. +|+|+.|+. |+++|||||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV 89 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFV 89 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEE
Confidence 345699999999999999999999999 577 999999965 999999997
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.10 E-value=6.1e-11 Score=104.99 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=46.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+||||||||+++|+++|+++|++||.|.+|+|+.|+.+|+++|||||
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV 62 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 62 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccc
Confidence 469999999999999999999999999999999999999999999997
No 126
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.10 E-value=7.9e-11 Score=89.88 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=45.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+++++|+++|++||.|.+++|+.++ +|+++|||||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV 62 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFV 62 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEE
Confidence 445799999999999999999999999999999999996 5999999997
No 127
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.10 E-value=3e-08 Score=86.96 Aligned_cols=201 Identities=10% Similarity=-0.012 Sum_probs=147.5
Q ss_pred cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHH
Q 013659 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (438)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~ 131 (438)
..|.++.+|...+..+... +..+.+..+|++++...|....+|......+. ..+..+.+..+|++++...+.....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRG-QDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 3577788898888877644 56788999999999999999999998877554 478899999999999987665433332
Q ss_pred HHHHHHHHHHHHhhhcccccchh-hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013659 132 DLFLTRIDGLRRRILFSGEVEGV-LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (438)
Q Consensus 132 ~~~~~~~~~l~rr~~~~~~~~~~-~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (438)
.+-..+. .. .++......|++++. . ...+....+|...+.+....| +++.|...|++++
T Consensus 81 ~l~~~~~--------------~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 81 NYGWFLC--------------GRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQG-QFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHH--------------TTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHH--------------HhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 2211110 01 234444455555544 0 123445668888888888888 8999999999999
Q ss_pred HhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013659 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG-TGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 211 ~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~-~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
...|+...+|...+......|+++.|..+|++++.. .+ +.+ ..+.....+....|+.+......
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--VEVLQA-DDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCH-HHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999999999999999999999984 33 333 45566677777788876655433
No 128
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=90.05 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=45.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+ +|+++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV 60 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFV 60 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEE
Confidence 45679999999999999999999999999999999998 8999999997
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.4e-11 Score=94.51 Aligned_cols=49 Identities=39% Similarity=0.514 Sum_probs=46.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+.+++++|+.+|+.||.|.+++++.++.+|+++|||||
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 55 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFC 55 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEE
Confidence 3469999999999999999999999999999999999889999999997
No 130
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.09 E-value=1.1e-10 Score=91.20 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=46.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+|+++|+++|+.||.|.+++|+.++ +|+++|||||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV 75 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADV 75 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEE
Confidence 456799999999999999999999999999999999997 9999999997
No 131
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.09 E-value=1.9e-11 Score=92.35 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=45.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||||||+++++++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 48 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEE
Confidence 48999999999999999999999999999999999889999999997
No 132
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=7.1e-11 Score=90.82 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|++||.|.+|+|+.+ ||||||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFV 57 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFI 57 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEE
Confidence 45679999999999999999999999999999999875 699997
No 133
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=7.8e-11 Score=94.71 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+.+|+.||.|.++.++.+..+|+++|||||
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV 72 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFV 72 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEE
Confidence 45679999999999999999999999999998666666689999999997
No 134
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.09 E-value=9.3e-11 Score=96.34 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 89 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFV 89 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 135
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=7.9e-11 Score=92.38 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCC-eeEEEEe-ecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRIL-HDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||. |.++.++ .++.+|+++|||||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV 57 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFV 57 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEE
Confidence 35679999999999999999999999998 9999998 78888999999997
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=6.3e-11 Score=94.53 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=44.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCe----eEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGV----SSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.+ .+|+++|||||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV 73 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFV 73 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEE
Confidence 345699999999999999999999999975 68999999 59999999997
No 137
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.08 E-value=8.9e-11 Score=104.77 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=45.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCC--CeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|++||||||
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV 117 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 117 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEE
Confidence 3667999999999999999999999999 9999999999999999999998
No 138
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=7e-11 Score=90.73 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV 62 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMV 62 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEE
Confidence 34579999999999999999999999999998888988889999999997
No 139
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.07 E-value=8e-11 Score=88.40 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCC-CcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK-SRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+++++.++.++. ++|||||
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV 52 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 52 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEE
Confidence 456999999999999999999999999999999999977766 9999997
No 140
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.5e-10 Score=90.77 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=43.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||.++|+++|+++|+.||.|.+++++.++ ++++|||||
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV 74 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFV 74 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEE
Confidence 456799999999999999999999999999999999984 458999997
No 141
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.07 E-value=2.4e-08 Score=99.35 Aligned_cols=197 Identities=10% Similarity=-0.039 Sum_probs=146.3
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccch-hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 013659 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-NVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (438)
Q Consensus 39 ~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~-~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ 117 (438)
.+.+...++.++...|.+..+|......+.. .++. +.+...|++|+...|.....|......+.. .++.+++...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 4456677788888889999999999987764 4566 889999999999999999999998875554 688999999999
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc--
Q 013659 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-- 195 (438)
Q Consensus 118 ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-- 195 (438)
+++...+. ...+..+-..+ ..... ........-+++|+..+.+++...+.....|...+.+....
T Consensus 162 ~al~~~p~-~~~~~~lg~~~-----~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVL-----RQLQT-------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHH-----TTCCC-------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHH-----HHhcc-------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99988765 22222221111 11100 11111223345555555554443555566888888888777
Q ss_pred ------CCCHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 196 ------GKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 196 ------~~~~~~ar~i~e~~l~~~~---~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
+ +++.|...|++++...| +...+|..........|+++.|...|++++.. .++.+
T Consensus 229 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~ 292 (474)
T 4abn_A 229 NTGQNPK-ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWP 292 (474)
T ss_dssp HTTCCHH-HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhccccc-hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 7 89999999999999999 89999999999999999999999999999983 44444
No 142
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=2.5e-08 Score=84.40 Aligned_cols=167 Identities=10% Similarity=-0.027 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
....|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|++++...|....+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445677777777888999999999999999999999999988877664 4567789999999999999888888887764
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchh
Q 013659 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~ 181 (438)
+.. .+..+.+...|++++...+ ..
T Consensus 86 ~~~-~~~~~~A~~~~~~~~~~~~-------------------------------------------------------~~ 109 (186)
T 3as5_A 86 YVQ-VQKYDLAVPLLIKVAEANP-------------------------------------------------------IN 109 (186)
T ss_dssp HHH-HTCHHHHHHHHHHHHHHCT-------------------------------------------------------TC
T ss_pred HHH-hcCHHHHHHHHHHHHhcCc-------------------------------------------------------Hh
Confidence 443 4566666666666554221 12
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
..+|...+.+....| +++.|..+|++++...|+...+|...+......|+++.|..+|++++..
T Consensus 110 ~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234555666666777 8999999999999999988889999999888999999999999999874
No 143
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.07 E-value=2.3e-10 Score=92.01 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....++|||+|||+.+++++|+++|+.||.|.+|+|+.++ +|+++|||||
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV 81 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADV 81 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEE
Confidence 3556799999999999999999999999999999999997 9999999997
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.06 E-value=1.4e-10 Score=98.27 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=47.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|+++|||||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 119 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 119 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 145
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.06 E-value=2e-10 Score=87.07 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=44.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+++|+.||.|.+++++.+ +|+++|||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV 53 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVV 53 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEE
Confidence 45579999999999999999999999999999999984 8999999997
No 146
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.05 E-value=1.6e-10 Score=97.08 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|+.||.|.+++|+.++.+|+++|||||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV 117 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 117 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEE
Confidence 44579999999999999999999999999999999999889999999997
No 147
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.05 E-value=1.1e-10 Score=93.83 Aligned_cols=49 Identities=31% Similarity=0.614 Sum_probs=46.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 83 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYI 83 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEE
Confidence 3469999999999999999999999999999999999889999999997
No 148
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.4e-10 Score=86.96 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+|+++|+.+|++||.|.+|.++.+ ||||||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFV 56 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFL 56 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEE
Confidence 34569999999999999999999999999999988764 799997
No 149
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.7e-10 Score=89.28 Aligned_cols=49 Identities=35% Similarity=0.440 Sum_probs=45.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV 61 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTV 61 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEE
Confidence 446799999999999999999999999999999999996 7999999997
No 150
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=3.5e-10 Score=85.46 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=45.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.| .|.+++|+.+ .+|+++|||||
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV 55 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFV 55 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEE
Confidence 456799999999999999999999999 9999999999 79999999997
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.03 E-value=1.3e-10 Score=94.78 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=43.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++|| |.+|+|+.|+ +|+++|||||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV 91 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADV 91 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEE
Confidence 3456999999999999999999999999 7799999996 5999999997
No 152
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.03 E-value=2.7e-10 Score=95.55 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+|+|+.++.+|+++|||||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 86 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 153
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.03 E-value=1.1e-10 Score=95.26 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=47.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV 94 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 94 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEE
Confidence 44579999999999999999999999999999999999889999999997
No 154
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=6.7e-08 Score=85.66 Aligned_cols=197 Identities=8% Similarity=-0.042 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p-~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
+.+.|...+......|+++.+...|++++...| .+..+|...+.... ..++.+.+...|++|+...|....+|.....
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 346788888888899999999999999999998 89988888666554 4567788999999999999999999999887
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCcccHHHHH---HHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013659 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYL---DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 101 ~le~~~~~~~~~~~i~~ral~~~~~~~~~~~---~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
.+. ..+..+.+...|++++...+....... ..+... +.+. ...+-+++|+..+.+++..
T Consensus 85 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g~~~----------------~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE-GQKF----------------QQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHH----------------HHTTCHHHHHHHHHHHTTS
T ss_pred HHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-hHHH----------------HHhccHHHHHHHHHHHHhc
Confidence 554 478899999999999987665432211 111110 0000 1112234455555554444
Q ss_pred Cch--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 178 TDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 178 ~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+. ....|...+.+.... ++.+++++....+.....+. .......+.++.|...|++++.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~------~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNN------GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHH------HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHH------HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 455 445666665554333 34455555555433332221 1123344667888889999887
No 155
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.02 E-value=2.3e-08 Score=85.44 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=125.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|..+|. +...|...+......|+++.+...|++++...|.+...|.......... +..+.+...+.
T Consensus 23 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~ 97 (184)
T 3vtx_A 23 GAIRAYKKVLKADPN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI-DEKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467889999988886 7889999999999999999999999999999999999999998877644 46677999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|....+|......+.. .+..+++...|++++...+
T Consensus 98 ~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p-------------------------------------- 138 (184)
T 3vtx_A 98 RAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKP-------------------------------------- 138 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT--------------------------------------
T ss_pred HHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcc--------------------------------------
Confidence 9999999999999887765443 5667777777776664322
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHH
Q 013659 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W 220 (438)
....+|...+.+....| +++.|...|+++++.+|++...+
T Consensus 139 -----------------~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 139 -----------------GFIRAYQSIGLAYEGKG-LRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp -----------------TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTHHHHHHC
T ss_pred -----------------hhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCccCHHHH
Confidence 22335666666677778 89999999999999988776543
No 156
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.02 E-value=8.4e-11 Score=89.72 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=45.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|++||.|.++.++.++.+|+++|||||
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV 62 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMV 62 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEE
Confidence 469999999999999999999999999999999998889999999997
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.02 E-value=1.9e-10 Score=100.19 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=47.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 60 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEE
Confidence 45679999999999999999999999999999999999889999999997
No 158
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.02 E-value=3.5e-08 Score=91.85 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHh
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIE 229 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~~ 229 (438)
++......|++++...... .........+...+.+....| +++.|..+|++++...+.. ..++.........
T Consensus 198 ~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 4445555666666554332 111223346777788888888 8999999999999874432 4577777888888
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 230 LDHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 230 ~g~~~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
.|+++.|...|++++...-....+.. ++..........|+.+.....+.++
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999864211112222 3334444444556655544444443
No 159
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=7.6e-10 Score=85.73 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=43.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.++. .++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV 60 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFV 60 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEE
Confidence 4567999999999999999999999999999999999843 38999997
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=2.6e-08 Score=96.45 Aligned_cols=261 Identities=11% Similarity=-0.006 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----HHHHHHHHHHHhhccchhHHHHHHHHHHHcC------CCC
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWV 91 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~------p~~ 91 (438)
....+...+......|+++.+..+|++++...|.++ .+|...+..... .++.+.+...|++|+..+ |..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 444555555555666666666666666666666665 344444444332 234555666666666542 333
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------cccHHHHHH---H-----------------------HHHHHH
Q 013659 92 GELWVRSLLSLERSRASEEEISTVFEKSLLCA------FSTFEEYLD---L-----------------------FLTRID 139 (438)
Q Consensus 92 ~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~------~~~~~~~~~---~-----------------------~~~~~~ 139 (438)
..+|......+. ..+..+.+...|++++... +.....+.. + +..-..
T Consensus 126 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 345555444332 3455666666666666431 110001100 0 000000
Q ss_pred HHHHhhhc---ccc--------------cchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHH
Q 013659 140 GLRRRILF---SGE--------------VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSA 202 (438)
Q Consensus 140 ~l~rr~~~---~~~--------------~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~a 202 (438)
++.+-+.. ... .....++......|++++...... ........++...+.+....| +++.|
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A 282 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHIFLG-QFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHCc-CHHHH
Confidence 00000000 000 000123444445555555544321 111122346677788888888 89999
Q ss_pred HHHHHHHHHhccch------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHHHH
Q 013659 203 RGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDF 273 (438)
Q Consensus 203 r~i~e~~l~~~~~~------~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~ 273 (438)
...|++++...+.. ..+|.....+....|+++.|..+|++++...-....+.. ++......-...|+.+.-
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999875432 457788888888899999999999999874211112222 334444455556776555
Q ss_pred HHHHHhhhhhHHH
Q 013659 274 DHSVQKVTPRLEE 286 (438)
Q Consensus 274 ~~a~~~~~~~l~~ 286 (438)
...+.++.....+
T Consensus 363 ~~~~~~al~~~~~ 375 (411)
T 4a1s_A 363 LKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhh
Confidence 5545554443333
No 161
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=2.5e-10 Score=85.67 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=40.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+++++.+ ++|||||
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV 47 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFV 47 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEE
Confidence 4579999999999999999999999999999999865 7899997
No 162
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=4.9e-10 Score=88.38 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=39.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+ ||||||
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFV 72 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFI 72 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEE
Confidence 3569999999999999999999999999999999875 699997
No 163
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.00 E-value=2.8e-08 Score=90.33 Aligned_cols=205 Identities=12% Similarity=0.024 Sum_probs=141.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|...+......|+++.+..+|++++...|.+...|...+..+.. .++.+.+..+|+
T Consensus 61 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 135 (275)
T 1xnf_A 61 LARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 467788999988876 677899999999999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|.....+..... +. ..+..+.+..+|.+++...+.....+. +.. ....+ .+.
T Consensus 136 ~a~~~~~~~~~~~~~~~~-~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~----~~~~~----------~~~----- 193 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYL-AE-QKLDEKQAKEVLKQHFEKSDKEQWGWN-IVE----FYLGN----------ISE----- 193 (275)
T ss_dssp HHHHHCTTCHHHHHHHHH-HH-HHHCHHHHHHHHHHHHHHSCCCSTHHH-HHH----HHTTS----------SCH-----
T ss_pred HHHHhCCCChHHHHHHHH-HH-HhcCHHHHHHHHHHHHhcCCcchHHHH-HHH----HHHHh----------cCH-----
Confidence 999999987754443332 22 246788999999998865544211111 000 00000 111
Q ss_pred HHHHHHHHHhhhhcCCc----hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHH
Q 013659 163 TFQRASDYLSEQMKNTD----GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~----~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
..|+..+...+...+ ....+|...+.+....| +++.|...|++++..+|++.. .+.......|+++.|..
T Consensus 194 --~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 194 --QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-DLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQD 267 (275)
T ss_dssp --HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHH
Confidence 223333333322222 22567888899998998 999999999999999886643 33444445567666665
Q ss_pred HH
Q 013659 239 IY 240 (438)
Q Consensus 239 i~ 240 (438)
.|
T Consensus 268 ~~ 269 (275)
T 1xnf_A 268 DL 269 (275)
T ss_dssp --
T ss_pred HH
Confidence 55
No 164
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=6.2e-10 Score=86.22 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+|+++|+++|+.||.|.+|+|+.++. .++|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV 60 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFV 60 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEE
Confidence 4567999999999999999999999999999999999843 37899997
No 165
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.99 E-value=6.1e-10 Score=84.71 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+++|||+|||+++|+++|+++|++||.|.+++++. +||||||
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFV 62 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALV 62 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEE
Confidence 345999999999999999999999999999999875 4699997
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.99 E-value=5.8e-08 Score=93.40 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=80.6
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEI 228 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~ 228 (438)
.++......|++++...... .........+...+.+....| +++.|...|++++...+.. ..+|........
T Consensus 201 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp TBHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 34555556666666654332 111223346777788888888 8999999999999875433 457778888888
Q ss_pred hcccHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 013659 229 ELDHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTP 282 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~a~~~~~~ 282 (438)
..|+++.|...|++++...-....+.. ++......-...|+.+.....+.++..
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999974211222322 333344444455766555444444433
No 167
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=4.5e-10 Score=85.79 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||||||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV 57 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVV 57 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEE
Confidence 456799999999999999999 99999999999999998654 899997
No 168
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.97 E-value=1.1e-07 Score=87.85 Aligned_cols=180 Identities=12% Similarity=0.049 Sum_probs=126.3
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHh--------cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC--
Q 013659 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAIT--------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-- 88 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~--------~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~-- 88 (438)
++.....|...+......|+++.+..+|++++. ..|....+|...+..+.. .+..+.+...|++++..+
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 466788899999988999999999999999998 466677788887776654 456788999999999864
Q ss_pred ------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----cccHHHHHHHHHHHHHHHHHhhhcccccchhhcH
Q 013659 89 ------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (438)
Q Consensus 89 ------p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~-----~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (438)
|....+|...... ....+..+.+...|++++... ..... ....+.... .+... ..++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la-~~~~~---------~~~~ 169 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLNNLA-LLCQN---------QGKY 169 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH-HHHHT---------TTCH
T ss_pred HhCCCChHHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHH-HHHHH---------cCCH
Confidence 4445667666653 445788999999999998642 11111 111111111 11111 1456
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
......|++++......... .+....++...+.+....| +++.|..+|++++..
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-KFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 67777888888776554332 3344567888899998999 899999999999975
No 169
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=1.3e-09 Score=84.31 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=39.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++++++|+++|++||.|.+|.++.+ ||||||
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFV 56 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALV 56 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEE
Confidence 3469999999999999999999999999999998763 699997
No 170
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=1.6e-07 Score=90.93 Aligned_cols=210 Identities=12% Similarity=0.003 Sum_probs=121.0
Q ss_pred ccchhHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CcccHHHHHHHHHH----
Q 013659 71 LKVGNVVRDVYSRATKNCPWVG----ELWVRSLLSLERSRASEEEISTVFEKSLLC------AFSTFEEYLDLFLT---- 136 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~~p~~~----~lW~~y~~~le~~~~~~~~~~~i~~ral~~------~~~~~~~~~~~~~~---- 136 (438)
.++.+.+...|++++...|... .+|......+. ..++.+.+...|++++.. .+.....+..+-..
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 3567789999999999998865 46666655444 468889999999998854 11111111111000
Q ss_pred -----HHHHHHH------hhhcc-cccc---hhhcHHHHHHH-----------------HHHHHHHHhhhhc------CC
Q 013659 137 -----RIDGLRR------RILFS-GEVE---GVLDYSLIRET-----------------FQRASDYLSEQMK------NT 178 (438)
Q Consensus 137 -----~~~~l~r------r~~~~-~~~~---~~~~~~~~r~~-----------------f~~a~~~l~~~~~------~~ 178 (438)
-..++.+ ..... .... ....+-....- +++|+.++..++. ..
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 0001110 00000 0000 00001111122 5555554444332 12
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH------HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013659 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML------EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~------~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (438)
+....++...+.+....| +++.|...|++++...+... .+|.....+....|+++.|..+|++++...-....
T Consensus 220 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 233457777888888888 89999999999998854322 37778888888899999999999999974211122
Q ss_pred hH---HHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 013659 253 SE---DICHAWLRFEREYGTLEDFDHSVQKVTP 282 (438)
Q Consensus 253 ~~---~i~~~~~~fE~~~G~~~~~~~a~~~~~~ 282 (438)
+. .++..........|+.+.-...+.++..
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 3344445555566776655555555443
No 171
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2e-09 Score=84.29 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=42.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+|+|+. +++++|||||
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV 66 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFV 66 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEE
Confidence 4567999999999999999999999999999999855 4568999997
No 172
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=7.9e-10 Score=84.88 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=39.4
Q ss_pred CCceEEEeCCCC-CCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+ ++|+++|+.+|++||.|.+|+|+.+ +|||||
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFV 57 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFI 57 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEE
Confidence 456999999999 9999999999999999999999875 489997
No 173
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.94 E-value=9.9e-11 Score=90.44 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+ .++.++.+|+++|||||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV 63 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYV 63 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEE
Confidence 34679999999999999999999999999988 77777778999999997
No 174
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=8e-10 Score=86.86 Aligned_cols=50 Identities=10% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCCceEEEeCCCCCCCHHHHH---HHhcCCCCeeEEEEeecCCCC---CCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLR---RFFSDVGGVSSIRILHDKFTG---KSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~~fv 438 (438)
...++|||+|||+++++++|+ ++|++||.|.+++|+.++.+| +++|||||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV 68 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV 68 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEE
Confidence 456799999999999999999 999999999999999987654 56699997
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.47 E-value=9.8e-11 Score=92.94 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=46.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeE--------EEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++++++|+.+|+.||.|.+ ++|+.++.+|+++|||||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV 62 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 62 (116)
Confidence 34569999999999999999999999999998 999999889999999997
No 176
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=1.4e-09 Score=84.72 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=39.2
Q ss_pred CCceEEEeCCCCC-CCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||++ +|+++|+++|++||.|.+|+|+. +||||||
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFV 67 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFI 67 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEE
Confidence 4579999999998 99999999999999999999874 4799997
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=1.4e-07 Score=87.78 Aligned_cols=202 Identities=10% Similarity=0.061 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHcCCCCHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNVVRDVYSRATKNCPWVGELWVRSL 99 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~-~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~-~~~~~~~~i~erAl~~~p~~~~lW~~y~ 99 (438)
.+..=+.|+.-....|.. +++..+++++|..+|.+..+|..-...+..-+ ...+..+..++.++...|.+..+|....
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~ 110 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 444444455444444443 56777777777777777777777666665433 2556677777777777777777777766
Q ss_pred HHH----HHcc--CCHHHHHHHHHHHHhCCcccHH--HHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHH
Q 013659 100 LSL----ERSR--ASEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYL 171 (438)
Q Consensus 100 ~~l----e~~~--~~~~~~~~i~~ral~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l 171 (438)
..+ .... ...++...++++++...+.++. .+..+.+.. +.. +. ..+++.++
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-------l~~---------~~-----~~~EL~~~ 169 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT-------FDL---------HN-----DAKELSFV 169 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TTC---------TT-----CHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------hcc---------cC-----hHHHHHHH
Confidence 555 3321 3455556677777766555332 222222211 100 00 01122222
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-HHHHHHHHHHHH
Q 013659 172 SEQMKNTDGLLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISMEIELDH-INEARSIYKRCY 244 (438)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~~------~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~-~~~ar~i~~ral 244 (438)
..++..++.++..|.+-..+...++ . ++.+.+.+.+++..+|++...|....-+....|. .+.+..++.+++
T Consensus 170 ~~~i~~d~~N~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 170 DKVIDTDLKNNSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2222234555556666655555555 3 5667777777777777777777555444445553 444555555555
Q ss_pred h
Q 013659 245 S 245 (438)
Q Consensus 245 ~ 245 (438)
.
T Consensus 249 ~ 249 (306)
T 3dra_A 249 D 249 (306)
T ss_dssp E
T ss_pred h
Confidence 4
No 178
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.91 E-value=1.2e-09 Score=93.28 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....++|||+|||+.+++++|+++|+.||.|.+|.|+.++ +|+++|||||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV 134 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADV 134 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEE
Confidence 3456799999999999999999999999999999999997 9999999997
No 179
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.91 E-value=4.2e-07 Score=84.42 Aligned_cols=254 Identities=10% Similarity=-0.058 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----HHHHHHHHHHHhhccchhHHHHHHHHHHHcC------CCCH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWVG 92 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~------p~~~ 92 (438)
...|...+......|+++.+..+|++++...|.++ .+|...+.... ..++.+.+...|++++... |...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 44566667777788999999999999999999985 45656665554 3456788999999998863 2234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhc---c-cc-------cchhhcHHH
Q 013659 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILF---S-GE-------VEGVLDYSL 159 (438)
Q Consensus 93 ~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~---~-~~-------~~~~~~~~~ 159 (438)
.+|......+. ..+..+.+...|++++..... ........+... ..+...... . .. .+....+..
T Consensus 84 ~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 84 KASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL-GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH-HHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 56666655443 478899999999999864322 111111111111 111111100 0 00 000011344
Q ss_pred HHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhcccH
Q 013659 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHI 233 (438)
Q Consensus 160 ~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~~~g~~ 233 (438)
....|.+++...... ...+....++...+.+....| +++.|...|++++...+.. ..+|...+......|++
T Consensus 162 A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 162 AVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 445555555543322 112233456777788888888 8999999999999874322 23777888888889999
Q ss_pred HHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHHHHHHHHHhhh
Q 013659 234 NEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVT 281 (438)
Q Consensus 234 ~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~a~~~~~ 281 (438)
+.|..+|++++...-....+.. ++..........|+.+.....+.++.
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999974212222322 33344444555677655544444443
No 180
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=2e-09 Score=82.94 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=41.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.| +++.+ .+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV 58 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFI 58 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEE
Confidence 456799999999999999999999999976 67777 68999999997
No 181
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=87.47 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=40.2
Q ss_pred CCceEEEeCCCCCCCHHHHH----HHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||||||+.+++++|+ ++|++||.|.+|.+. .+|++||||||
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV 77 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYI 77 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEE
Confidence 35699999999999999876 699999999998774 37889999997
No 182
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.90 E-value=4.2e-07 Score=80.43 Aligned_cols=189 Identities=8% Similarity=0.001 Sum_probs=131.6
Q ss_pred hhhHhHHHHHhcCC-CCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013659 3 NARAHLEEQISRQD-LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~-~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
+|...|+.+|...| . +...|...+......|+++.+...|++++..+|.+..+|...+..+.. .++.+.+...|
T Consensus 25 ~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~ 99 (228)
T 4i17_A 25 VAFEKYSEYLKLTNNQ----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYIATL 99 (228)
T ss_dssp HHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHHHHH
Confidence 46678889998876 4 456677777778889999999999999999999999999999987764 45778899999
Q ss_pred HHHHHcCCCCHH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccc
Q 013659 82 SRATKNCPWVGE-------LWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 82 erAl~~~p~~~~-------lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
++++...|.... +|......+ ...+..+.+...|++++...+. ....+..+-..+..
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~------------- 165 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQKF-QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN------------- 165 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhHHH-HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-------------
Confidence 999999999884 466554433 3478899999999999988766 43433332222210
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013659 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~ 226 (438)
.-...++++..... .. ...+........+ .++.|...|+++++..|++..+......+
T Consensus 166 ------~~~~~~~~a~~~~~-----~~----~~~~~~~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 166 ------NGADVLRKATPLAS-----SN----KEKYASEKAKADA-AFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp ------HHHHHHHHHGGGTT-----TC----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhccc-----CC----HHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 01122233322211 11 1112222233344 68999999999999999988766555444
No 183
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=4.4e-10 Score=88.98 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.++.+..+..+|+++|||||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV 72 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 72 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEE
Confidence 45679999999999999999999999999954433333238899999997
No 184
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.89 E-value=1.3e-09 Score=79.88 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=38.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...||||||++.+|+++|+++|.+||+|.+++++. +||||||
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFV 48 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALC 48 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEE
Confidence 45899999999999999999999999999999865 6899997
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.88 E-value=1.7e-09 Score=93.80 Aligned_cols=47 Identities=19% Similarity=0.383 Sum_probs=44.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +|+++|||||
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFV 155 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFV 155 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEE
Confidence 3599999999999999999999999999999999984 7999999997
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.87 E-value=6.8e-07 Score=88.14 Aligned_cols=127 Identities=10% Similarity=-0.030 Sum_probs=82.5
Q ss_pred hhhHhHHHHHhcCC-----CCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC--------CCCHHHHHHHHHHHHh
Q 013659 3 NARAHLEEQISRQD-----LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF--------PVSSDLWLDYTQYLDK 69 (438)
Q Consensus 3 ~~R~~~E~~l~~~~-----~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~--------p~~~~lW~~Y~~~l~~ 69 (438)
+|...|+.+|.-.+ ..++.....|..++..-...|+++.+...|++++..+ +....++......+..
T Consensus 69 eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (472)
T 4g1t_A 69 AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLK 148 (472)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHH
Confidence 34556666664311 1123345678888888888899999999999998742 3445565544332222
Q ss_pred -hccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhCCcccHHH
Q 013659 70 -TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER--SRASEEEISTVFEKSLLCAFSTFEE 129 (438)
Q Consensus 70 -~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~--~~~~~~~~~~i~~ral~~~~~~~~~ 129 (438)
..+..+.+...|++|+...|....+|..+...+.. ..+..+.+...|++|+...+.....
T Consensus 149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 22356779999999999999998888887654332 2334455677888988776654433
No 187
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.86 E-value=5e-07 Score=86.78 Aligned_cols=254 Identities=10% Similarity=-0.056 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----HHHHHHHHHHHhhccchhHHHHHHHHHHHcC------CCC
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWV 91 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~------p~~ 91 (438)
....|..-+......|+++.+..+|++++...|.++ .+|...+.... ..++.+.+...|++|+... |..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344677777777889999999999999999999885 46666666554 3456788999999998863 223
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhc------cccc-----chhhcHH
Q 013659 92 GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILF------SGEV-----EGVLDYS 158 (438)
Q Consensus 92 ~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~------~~~~-----~~~~~~~ 158 (438)
..+|......+. ..+..+.+...|++++..... ........+... ..+...... .... +....+.
T Consensus 87 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 87 AKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL-GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHH-HHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 456666555443 468899999999999864322 111111111111 111101100 0000 0001144
Q ss_pred HHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhccc
Q 013659 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDH 232 (438)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~~~g~ 232 (438)
.....|.+++.+.... ...+....++...+.+....| +++.|...|++++...+.. ..+|..........|+
T Consensus 165 ~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 165 AAVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT-BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4445555555544332 122333457777888888889 8999999999999874332 2377777788888999
Q ss_pred HHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 233 INEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 233 ~~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
++.|..+|++++...-....+.. ++..........|+.+.....+.++
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999964211222322 3333344444557655444444443
No 188
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.86 E-value=2.6e-09 Score=83.41 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=39.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....++|||||||+++|+++|+.+|++||.|.+++++ +|||||
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV 70 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFV 70 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEE
Confidence 3556799999999999999999999999999999987 689997
No 189
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.85 E-value=2.5e-09 Score=104.51 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=46.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.++.+|+++|||||
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV 149 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEE
Confidence 3569999999999999999999999999999999999889999999998
No 190
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=4.4e-09 Score=78.16 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=39.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|.+++++.+ +|||||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV 53 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFI 53 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEE
Confidence 34569999999999999999999999999999999864 689997
No 191
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.85 E-value=4e-09 Score=83.37 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=41.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+.+|+.||.|.+++++.+ |.++|||||
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV 52 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYV 52 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEE
Confidence 3469999999999999999999999999999999865 456999997
No 192
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.2e-09 Score=80.49 Aligned_cols=45 Identities=24% Similarity=0.444 Sum_probs=39.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|. ++++.+ +++|||||
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV 61 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFL 61 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEE
Confidence 3456999999999999999999999999996 667654 68899997
No 193
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=3.7e-09 Score=81.46 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=39.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||||||.++++++|+.+|+.||.|.+++++ +++|||||
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV 68 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFI 68 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEE
Confidence 35699999999999999999999999999999987 36799997
No 194
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=5.6e-09 Score=80.10 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=39.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+.+|+++|+.+|+.||.|.+++++.+ +|||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV 56 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFI 56 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEE
Confidence 45679999999999999999999999999999998854 699997
No 195
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=1.1e-06 Score=79.55 Aligned_cols=186 Identities=11% Similarity=-0.038 Sum_probs=130.3
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC---HHH
Q 013659 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GEL 94 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~---~~l 94 (438)
.+.+.+...+......|+++.++.+|++++..+|.+ +..|...+..... .++.+.+...|++++...|.+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677778888888999999999999999999998 8888887776654 456788999999999998854 345
Q ss_pred HHHHHHHHHHc-------cCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHH
Q 013659 95 WVRSLLSLERS-------RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRA 167 (438)
Q Consensus 95 W~~y~~~le~~-------~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a 167 (438)
|......+... .+..+.+...|++++...+........ ..++ ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a--~~~~--------------------------~~~ 143 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA--TQKI--------------------------REL 143 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH--HHHH--------------------------HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH--HHHH--------------------------HHH
Confidence 55544433320 456788889999988655442110000 0000 000
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHhc----------ccHH
Q 013659 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIEL----------DHIN 234 (438)
Q Consensus 168 ~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~---~~~~W~~y~~~e~~~----------g~~~ 234 (438)
... ....+...+.+....| +++.|...|++++..+|+ ....|.......... |+++
T Consensus 144 ~~~----------~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 144 RAK----------LARKQYEAARLYERRE-LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp HHH----------HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHH----------HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 000 0112455677777888 899999999999999887 455666666655544 8899
Q ss_pred HHHHHHHHHHhc
Q 013659 235 EARSIYKRCYSK 246 (438)
Q Consensus 235 ~ar~i~~ral~~ 246 (438)
.|...|++++..
T Consensus 213 ~A~~~~~~~~~~ 224 (261)
T 3qky_A 213 RAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999983
No 196
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=2.5e-08 Score=84.98 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013659 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
+.+...+......|+++.+..+|++++...|.++..|..++..+... +..+.+...|++++...| ...++..... +.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~p-~~~~~~~~~~-~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ-DNSYKSLIAK-LE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGGGC-CHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhccC-ChHHHHHHHH-HH
Confidence 34556666667788889999999999998899999999888877644 466778888888888888 5544332211 10
Q ss_pred HccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHH
Q 013659 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (438)
Q Consensus 104 ~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (438)
. ..+ .. .. .....|++++.. .|....
T Consensus 84 ~-----------~~~-~~--~~---------------------------------~a~~~~~~al~~-------~P~~~~ 109 (176)
T 2r5s_A 84 L-----------HQQ-AA--ES---------------------------------PELKRLEQELAA-------NPDNFE 109 (176)
T ss_dssp H-----------HHH-HT--SC---------------------------------HHHHHHHHHHHH-------STTCHH
T ss_pred H-----------Hhh-cc--cc---------------------------------hHHHHHHHHHHh-------CCCCHH
Confidence 0 000 00 00 001233444332 344556
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch--HHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~--~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
++..++.+....| +++.|...|++++...|+. ...|..........|+.+.|...|+++|..
T Consensus 110 ~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 110 LACELAVQYNQVG-RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 7888888888888 8999999999999998875 558999999999999999999999999873
No 197
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.83 E-value=5.9e-09 Score=87.95 Aligned_cols=50 Identities=30% Similarity=0.384 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 134 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 134 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 198
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=4.9e-09 Score=80.89 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=42.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.|+ .++++.++.+|+++|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV 59 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFV 59 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEE
Confidence 4557999999999999999999999774 6788888889999999997
No 199
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.81 E-value=4.4e-09 Score=91.49 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=46.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 151 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEE
Confidence 3469999999999999999999999999999999999889999999997
No 200
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.81 E-value=5.1e-09 Score=80.01 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=38.3
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+ ++++++|+.+|+.||.|.++++. +|||||
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV 62 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFI 62 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEE
Confidence 4567999999998 99999999999999999999883 799997
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.81 E-value=2.2e-09 Score=83.85 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=40.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCC-CeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|+.|| .|..+.++.+ +++|||||
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV 72 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGAL 72 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEE
Confidence 3457999999999999999999999999 8999988643 48899997
No 202
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=8.4e-09 Score=80.50 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=39.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+++|+.+ |||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV 55 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVV 55 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEE
Confidence 45679999999999999999999999999999999876 89997
No 203
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.80 E-value=1.3e-09 Score=83.41 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=41.7
Q ss_pred CCceEEEeCCCCCCCHHHHH----HHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++++++|+ .+|++||.|.+++++. +|+++|||||
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV 56 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFV 56 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEE
Confidence 45699999999999999999 9999999999998873 6788999997
No 204
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.80 E-value=4.3e-09 Score=93.09 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=44.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV 75 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFV 75 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEE
Confidence 459999999999999999999999999999999999889999999997
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.80 E-value=6.7e-09 Score=88.26 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=46.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV 141 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 141 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEE
Confidence 3679999999999999999999999999999999999889999999997
No 206
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=3.2e-09 Score=81.81 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=39.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||+|||+++|+++|+++|++||.|.+++++.+ ++|||||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV 42 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFV 42 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEE
Confidence 48999999999999999999999999999999887 7899997
No 207
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.78 E-value=6.3e-06 Score=74.90 Aligned_cols=199 Identities=11% Similarity=-0.015 Sum_probs=138.3
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHcCCCCHHHHH
Q 013659 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWV 96 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~i~erAl~~~p~~~~lW~ 96 (438)
+.+...|..........|+++.+...|++++. |.++..|......+... .++.+.+...|++|+... ....|.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 34667888888888889999999999999999 77888888888766640 456788999999999864 567777
Q ss_pred HHHHHHHH---ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhh
Q 013659 97 RSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (438)
Q Consensus 97 ~y~~~le~---~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~ 173 (438)
.....+.. ..++.+.+...|++++..+.. ..+..+-..+. .-. ....++......|++++..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~-----~~~-----~~~~~~~~A~~~~~~a~~~--- 143 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYH-----DGK-----VVTRDFKKAVEYFTKACDL--- 143 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHH-----HCS-----SSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc--cHHHHHHHHHH-----cCC-----CcccCHHHHHHHHHHHHhc---
Confidence 76654443 167789999999999987533 22222221111 100 0013444455555555542
Q ss_pred hhcCCchhHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----cccHHHHHHHHHHHHh
Q 013659 174 QMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYS 245 (438)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~----~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~----~g~~~~ar~i~~ral~ 245 (438)
.+ ...+...+.+... .+ +++.|...|++++... ....+.....+... .++++.|...|++++.
T Consensus 144 ----~~--~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 144 ----ND--GDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp ----TC--HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred ----Cc--HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 22 2356666777666 66 8999999999999873 35666667777777 8899999999999997
Q ss_pred c
Q 013659 246 K 246 (438)
Q Consensus 246 ~ 246 (438)
.
T Consensus 215 ~ 215 (273)
T 1ouv_A 215 L 215 (273)
T ss_dssp T
T ss_pred C
Confidence 3
No 208
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.78 E-value=5.5e-09 Score=86.83 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|++||.|.+++++.+ ++|||||
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV 115 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFV 115 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEE
Confidence 45679999999999999999999999999999999886 6899997
No 209
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=1.6e-06 Score=80.55 Aligned_cols=221 Identities=9% Similarity=0.055 Sum_probs=171.2
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhcCCCCHHHHHHHHHHH----Hhhc--cch
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--DPGRVQLLYERAITDFPVSSDLWLDYTQYL----DKTL--KVG 74 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g--~~~~~~~~yERal~~~p~~~~lW~~Y~~~l----~~~~--~~~ 74 (438)
++-..++.+|..+|. ++.+|..=.......| .++.+..+++.+|..+|.++.+|..-...+ .... ...
T Consensus 51 ~aL~~t~~~L~~nP~----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 51 RALHITELGINELAS----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHCcH----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 355678888888886 8999998888888888 899999999999999999999999988877 3221 455
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCCcccHHH--HHHHHHHHHHHHHHhhhcccc
Q 013659 75 NVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE--EISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGE 150 (438)
Q Consensus 75 ~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~--~~~~i~~ral~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~ 150 (438)
+....++++++...|.+..+|....-.+... +..+ +....+++++...+.+... +..+.+. ++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~-------~l----- 193 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF-------SK----- 193 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------SS-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------hc-----
Confidence 6788999999999999999999987766653 4444 6677889999877764432 2221110 10
Q ss_pred cchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cchHHHHHHHHHHH
Q 013659 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISME 227 (438)
Q Consensus 151 ~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~~~~W~~y~~~e 227 (438)
.. ......++++++++..++...+.....|.+..-+....+...+.+..+.++++... +.+...|...++..
T Consensus 194 ----~~-~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 194 ----KH-LATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp ----GG-GCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred ----cc-cchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 00 01234588999999888877777888999988888888866777888888888764 66777787888877
Q ss_pred HhcccHHHHHHHHHHHHh
Q 013659 228 IELDHINEARSIYKRCYS 245 (438)
Q Consensus 228 ~~~g~~~~ar~i~~ral~ 245 (438)
...|+.+.|..+|+++..
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 788999999999999986
No 210
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.77 E-value=5.4e-07 Score=81.65 Aligned_cols=165 Identities=11% Similarity=0.034 Sum_probs=111.0
Q ss_pred HhcCChhhHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC--------CCCHHHHHH
Q 013659 34 QSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--------PWVGELWVR 97 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~--------~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~--------p~~~~lW~~ 97 (438)
...|+++.+..+|++|+.. .|....+|...+..+.. .+..+.+...|++++... |....+|..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3567888999999999883 35566777777776654 456778999999999864 444567777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC-----cccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHh
Q 013659 98 SLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (438)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~ral~~~-----~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~ 172 (438)
....+ ...++.+++...|++++... ..... ....+.... .+... ..++......|++++....
T Consensus 91 l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la-~~~~~---------~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 91 LAVLY-GKRGKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLA-LLCQN---------QGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH-HHHHT---------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhccHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHH-HHHHH---------cCCHHHHHHHHHHHHHHHH
Confidence 66644 45788999999999998641 11111 111111111 11111 1456677788888887765
Q ss_pred hhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 173 EQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 173 ~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
..... .+....++...+.+....| +++.|..+|++++..
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 54433 3344567888899999999 899999999999986
No 211
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.77 E-value=3.3e-09 Score=89.73 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=45.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 134 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 134 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEE
Confidence 358999999999999999999999999999999999889999999997
No 212
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=9.5e-09 Score=77.29 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|.+++++ +|||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV 47 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 47 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEE
Confidence 345799999999999999999999999999999987 589997
No 213
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.77 E-value=2.1e-09 Score=82.00 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=39.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|..+ ..+|+++|||||
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV 58 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYI 58 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEE
Confidence 456799999999999999999999999987655 358899999997
No 214
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.76 E-value=1.5e-08 Score=88.27 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+.+|+++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 45679999999999999999999999999999999999889999999997
No 215
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=1.4e-08 Score=77.52 Aligned_cols=43 Identities=12% Similarity=0.276 Sum_probs=39.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.++.++.+ +|||||
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV 58 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYI 58 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEE
Confidence 4579999999999999999999999999999998754 689997
No 216
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=1e-06 Score=77.11 Aligned_cols=171 Identities=8% Similarity=-0.032 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHhhccchhHHHHHHHHHHH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLD----------------YTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~----------------Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
.+.+..-+......|+++.++..|++++..+|.++..|.. .+..+. ..+..+.+...|++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 3455556666678899999999999999999999999987 666554 44677889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHH
Q 013659 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~ 166 (438)
..|.....|......+. ..+..+++...|++++...+.....+..+-..+...- ......
T Consensus 83 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-------------------~~~~~~ 142 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-------------------EQEKKK 142 (208)
T ss_dssp HCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------------HHHHHH
T ss_pred HCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-------------------HHHHHH
Confidence 99999999999887555 4788999999999999887776555443332221000 011112
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 013659 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (438)
+...+.......+..+ .|...+......+ +++.|...|++++..+|+.
T Consensus 143 ~~~~~~~~~~~~~~~~-a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 143 LETDYKKLSSPTKMQY-ARYRDGLSKLFTT-RYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHC---CCCHHHH-HHHHHHHHHHHHH-THHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHhCCCchhH-HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCH
Confidence 2222222222122111 2222233334456 7889999999999888874
No 217
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=4.4e-09 Score=82.54 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=39.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+.++|||+|||+.+|+++|+.+|++||.|.+|.|+. ++|||||
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV 51 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIV 51 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEE
Confidence 457999999999999999999999999999998874 5789997
No 218
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=1.5e-07 Score=97.93 Aligned_cols=174 Identities=14% Similarity=0.009 Sum_probs=125.2
Q ss_pred HhcCChhhHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013659 34 QSSGDPGRVQLLYERAI--------TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal--------~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~ 105 (438)
...|+++.+...|++++ ..+|.+...|...+..+... +..+.+...|++|+...|....+|..+...+. .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-L 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-H
Confidence 56789999999999999 88999999999998876644 56788999999999999999999998877554 4
Q ss_pred cCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHH
Q 013659 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~ 185 (438)
.+..+++...|++|+...+.....+..+-..+. +. .+++. ...|++|+.. .+.....|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~-----~~---------g~~~~-~~~~~~al~~-------~P~~~~a~ 537 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAE-----LA---------GNTDE-HKFYQTVWST-------NDGVISAA 537 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-----HH---------TCCCT-TCHHHHHHHH-------CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----Hc---------CChHH-HHHHHHHHHh-------CCchHHHH
Confidence 688999999999999876664433332222111 11 22222 3455665553 34445577
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc
Q 013659 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (438)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~ 232 (438)
...+.+....| +++.|...|++++...|+....|..........|.
T Consensus 538 ~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEG-DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcC-CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 77888888888 78888888888888888888877777666544343
No 219
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=3.6e-07 Score=84.43 Aligned_cols=168 Identities=14% Similarity=0.004 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHH
Q 013659 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL 133 (438)
Q Consensus 54 p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~ 133 (438)
|.+.+.+...+..+... ++.+.+..+|++++...|.....|..+...+. ..+..+++..+|++++...+......+..
T Consensus 114 p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQE-SNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 55556666555544432 34555666666666666666666666665333 35566666666666655433211111110
Q ss_pred HHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 013659 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (438)
Q Consensus 134 ~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~ 213 (438)
. +.... .. ........|++++. ..|....++..++.++...| +++.|...|.+++..+
T Consensus 192 ~---~~l~~-~~----------~~~~a~~~l~~al~-------~~P~~~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 Q---IELLX-QA----------ADTPEIQQLQQQVA-------ENPEDAALATQLALQLHQVG-RNEEALELLFGHLRXD 249 (287)
T ss_dssp H---HHHHH-HH----------TSCHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred H---HHHHh-hc----------ccCccHHHHHHHHh-------cCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcc
Confidence 0 00000 00 00011123333333 24556678888999988888 8999999999999999
Q ss_pred cch--HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 214 GAM--LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 214 ~~~--~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|+. ...|...+.+....|+.+.|...|++++.
T Consensus 250 p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 LTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 987 78999999999999999999999999986
No 220
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=8.6e-09 Score=80.59 Aligned_cols=43 Identities=26% Similarity=0.454 Sum_probs=39.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+.+|+++|+.+|+.||.|.+|+++.+ +|||||
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV 66 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFV 66 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEE
Confidence 4569999999999999999999999999999999876 699997
No 221
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.72 E-value=1.8e-08 Score=85.23 Aligned_cols=49 Identities=27% Similarity=0.497 Sum_probs=46.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||..+++++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 136 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 136 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEE
Confidence 4569999999999999999999999999999999999879999999997
No 222
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.72 E-value=1.6e-09 Score=89.27 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=40.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEE--Eeec---CCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIR--ILHD---KFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~--~~~~---~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+.+|+.||.|.++. ++.+ ..+|+++|||||
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV 97 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFI 97 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEE
Confidence 3457999999999999999999999999987741 1111 248999999997
No 223
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=1.2e-05 Score=73.11 Aligned_cols=210 Identities=10% Similarity=-0.062 Sum_probs=146.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchh
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGN 75 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~----~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~ 75 (438)
++...|+.++. +. +...|...+..... .++++.+...|++++... ++..|.......... .++.+
T Consensus 24 ~A~~~~~~a~~--~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 24 QAKKYFEKACD--LK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp HHHHHHHHHHH--TT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHH--CC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHH
Confidence 35566777776 22 45677777777777 899999999999999885 788888888766641 45678
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccc
Q 013659 76 VVRDVYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 76 ~~~~i~erAl~~~p~~~~lW~~y~~~le~~---~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
.+...|++|+.. .....|......+... .++.+.+...|++++..+... .+..+-..+. .-. .
T Consensus 96 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~-----~~~--~--- 161 (273)
T 1ouv_A 96 KALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD--GCTILGSLYD-----AGR--G--- 161 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHH-----HTS--S---
T ss_pred HHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH--HHHHHHHHHH-----cCC--C---
Confidence 899999999986 3567777766644431 578899999999999876432 2222211111 100 0
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013659 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~----~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
...++......|+++.+. .+ ...+...+.+... .+ +++.|...|++++...+ ...+.....+..
T Consensus 162 ~~~~~~~A~~~~~~a~~~-------~~--~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL-------KD--SPGCFNAGNMYHHGEGATK-NFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT-------TC--HHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-------CC--HHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 013444555555555442 22 2356667777777 67 89999999999998855 556666677776
Q ss_pred h----cccHHHHHHHHHHHHhc
Q 013659 229 E----LDHINEARSIYKRCYSK 246 (438)
Q Consensus 229 ~----~g~~~~ar~i~~ral~~ 246 (438)
. .++++.|...|++++..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 6 78999999999999973
No 224
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.71 E-value=3.8e-07 Score=95.02 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=104.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+++|...|. +..+|..++......|+++.|...|++||..+|.+...|......+... +..+.+...|+
T Consensus 27 eAi~~~~kAl~l~P~----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~-g~~~~A~~~~~ 101 (723)
T 4gyw_A 27 EAVRLYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYT 101 (723)
T ss_dssp HHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 577889999998886 7889999999999999999999999999999999999999999877754 56788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE 129 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~ 129 (438)
+|+...|.....|......+. ..+..+++...|++|+...+.....
T Consensus 102 kAl~l~P~~~~a~~~Lg~~~~-~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 102 RAIQINPAFADAHSNLASIHK-DSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999887555 4778899999999998766654433
No 225
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.6e-08 Score=75.52 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=38.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||||||+++|+++|+.+|+.||.|.+| +.++.+|+ ||||
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV 50 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIV 50 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEE
Confidence 34599999999999999999999999999987 66666776 9987
No 226
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.70 E-value=2e-08 Score=78.63 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=38.3
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+. +|+++|+++|++||.|.+|++ ++|||||
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV 67 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFV 67 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEE
Confidence 34579999999999 999999999999999999988 5799997
No 227
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.70 E-value=1.6e-08 Score=89.37 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=46.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV 172 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFI 172 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEE
Confidence 459999999999999999999999999999999999889999999997
No 228
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.70 E-value=1.3e-08 Score=86.73 Aligned_cols=48 Identities=33% Similarity=0.495 Sum_probs=44.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+++++.+ .+|+++|||||
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV 141 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFV 141 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEE
Confidence 4569999999999999999999999999999999999 47999999997
No 229
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.70 E-value=8.3e-07 Score=74.85 Aligned_cols=150 Identities=13% Similarity=0.042 Sum_probs=112.0
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+...|+.++...|. +...|...+......|+++.+..+|++++...|.+..+|...+..+... ++.+.+...|++
T Consensus 27 A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~ 101 (186)
T 3as5_A 27 AVMLLEQVYDADAF----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV-QKYDLAVPLLIK 101 (186)
T ss_dssp HHHHHTTTCCTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 33444455544443 6778888888888999999999999999999999999999999877644 567789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHH
Q 013659 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (438)
++...|....+|..++..+.. .++.+.+..+|++++...+.
T Consensus 102 ~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~-------------------------------------- 142 (186)
T 3as5_A 102 VAEANPINFNVRFRLGVALDN-LGRFDEAIDSFKIALGLRPN-------------------------------------- 142 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT--------------------------------------
T ss_pred HHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCcc--------------------------------------
Confidence 999999998898887765443 56677777777776643222
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013659 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
...++...+.+....| +++.|...|++++...|+
T Consensus 143 -----------------~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 143 -----------------EGKVHRAIAFSYEQMG-RHEEALPHFKKANELDEG 176 (186)
T ss_dssp -----------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHC
T ss_pred -----------------chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC
Confidence 1224455555556667 788888888888877554
No 230
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=2e-07 Score=77.12 Aligned_cols=127 Identities=11% Similarity=0.005 Sum_probs=100.9
Q ss_pred CchhhHhHHHHHhcC---CCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHH
Q 013659 1 MCNARAHLEEQISRQ---DLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77 (438)
Q Consensus 1 ~~~~R~~~E~~l~~~---~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~ 77 (438)
|+..+..+|.+|... ...++++...|...+.+-...|+++.+...|+++|..+|.++..|......+.. .+..+.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHH
Confidence 356677777777442 223456666788888888899999999999999999999999999999987764 4567889
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHH
Q 013659 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (438)
Q Consensus 78 ~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~ 128 (438)
...|++|+...|....+|..+...+...+...+.+...+++|+...|....
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 999999999999999999998886665444445566677999987776543
No 231
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=7.4e-07 Score=71.34 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=96.0
Q ss_pred CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHH
Q 013659 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (438)
Q Consensus 18 ~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~ 97 (438)
.||+..+.|..-+....+.|+++.++..|++||..+|.++.+|...+..+.. .+..+.+...|++||...|.....|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4677888999999999999999999999999999999999999999987764 456788999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCcccHH
Q 013659 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (438)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~ral~~~~~~~~ 128 (438)
....+.. .+..+++...|++++...|....
T Consensus 87 lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 87 KAACLVA-MREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHHCcCCHH
Confidence 8875554 78899999999999988776543
No 232
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.7e-08 Score=76.91 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+ .+|+++|+.+|++||.|.++++. +|||||
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV 50 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFI 50 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEE
Confidence 3456999999999 99999999999999999999884 689997
No 233
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.69 E-value=1.6e-08 Score=85.27 Aligned_cols=49 Identities=31% Similarity=0.482 Sum_probs=46.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 135 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 135 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEE
Confidence 3468999999999999999999999999999999999889999999997
No 234
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.68 E-value=1.4e-08 Score=75.93 Aligned_cols=43 Identities=7% Similarity=0.253 Sum_probs=38.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+++|++| .|.++++. +++|||||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV 45 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFV 45 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEE
Confidence 456799999999999999999999999 99999884 57899997
No 235
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=75.27 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|+.||.|.+++++. |||||
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV 49 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFV 49 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEE
Confidence 4567999999999999999999999999999999873 48886
No 236
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.67 E-value=9.5e-06 Score=74.97 Aligned_cols=187 Identities=13% Similarity=-0.002 Sum_probs=132.0
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+...|+..|.... +|++...|...+......|+++.+..+|++ |.+..+|...+..+.. .+..+.+...|++
T Consensus 84 A~~~l~~ll~~~~--~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~-~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSV--DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK-LDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 4556777776531 123677888888888899999999999998 8999999999887764 4567889999999
Q ss_pred HHHcCCCCHHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHH
Q 013659 84 ATKNCPWVGELWV--RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (438)
Q Consensus 84 Al~~~p~~~~lW~--~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (438)
++...|....... .|+. +....+..+++..+|++++...+.....+..+-..+. +. .++....
T Consensus 156 ~~~~~p~~~~~~l~~a~~~-l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-----~~---------g~~~eA~ 220 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVS-LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-----AQ---------GRWEAAE 220 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-----HT---------TCHHHHH
T ss_pred HHhhCcCcHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----Hc---------CCHHHHH
Confidence 9999998753222 2333 2223567899999999999876665444333222211 11 3455555
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHH
Q 013659 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W 220 (438)
..|++++.. .+.....|...+.+....|+..+.+..++++++..+|++..+-
T Consensus 221 ~~l~~al~~-------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 221 GVLQEALDK-------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 555555553 4556668888888888889544568899999999999987653
No 237
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=1.1e-05 Score=75.86 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
.++|..+.......+..+++..+++++|..+|.+..+|..-...+..-+...+.....++.++...|.+..+|......+
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555555555555566789999999999999999999998888775443567799999999999999999999988877
Q ss_pred HHccC-CHHHHHHHHHHHHhCCcccHH--HHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCc
Q 013659 103 ERSRA-SEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (438)
Q Consensus 103 e~~~~-~~~~~~~i~~ral~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~ 179 (438)
....+ ..++...++.+++...+.++. .+..+.+..+.. . .. .+ ...+.++++++.+.+..++
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~----~---~~----~~----~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST----L---GR----IS----EAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH----T---TC----CC----HHHHHHHHHHHHHHHHHCT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc----c---cc----cc----hhhHHHHHHHHHHHHHhCC
Confidence 76523 556777899999988776443 333222221110 0 00 00 1334456666666666567
Q ss_pred hhHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc
Q 013659 180 GLLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (438)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~------~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g 231 (438)
.++..|.+-..+...+++. ++.+.+.+.+++..+|++...|...--+....|
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 7788999888877777631 688999999999999999999965555555544
No 238
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=2.1e-08 Score=75.41 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=37.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|++||.|.+++++. |||||
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV 48 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFV 48 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEE
Confidence 4456999999999999999999999999999999873 48886
No 239
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.66 E-value=1e-08 Score=81.04 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=38.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|.+|.|+.+ |||||
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV 56 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVV 56 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEE
Confidence 34679999999999999999999999999999999876 89997
No 240
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=5.3e-08 Score=74.56 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=37.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCC--CCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDV--GGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.| |.|.+++++ +|||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV 56 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFV 56 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEE
Confidence 345799999999999999999999999 899988764 579997
No 241
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=8e-07 Score=90.37 Aligned_cols=162 Identities=12% Similarity=-0.053 Sum_probs=91.5
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 013659 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~ 116 (438)
|+++.+...|++++..+|.+...|...+..+... ++.+.+...|++|+...|.....|..+...+. ..+..+++...|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHH
Confidence 5666777777777777777777777777665543 45566777777777777777777777666444 356677777777
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc-
Q 013659 117 EKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM- 195 (438)
Q Consensus 117 ~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~- 195 (438)
++++...+.....+..+-..+. .. .+++.....|++++.. .+.....+..++.+....
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~-----~~---------g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALE-----DA---------GQAEAAAAAYTRAHQL-------LPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhh
Confidence 7777665544333322221110 11 2333444444444443 344455778888888888
Q ss_pred --CCCHHHHHHHHHHHHHhccchHHHHHH
Q 013659 196 --GKDMVSARGVWERLLKISGAMLEAWQS 222 (438)
Q Consensus 196 --~~~~~~ar~i~e~~l~~~~~~~~~W~~ 222 (438)
+ +.+.|...|++++...|+....|..
T Consensus 140 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 140 DWR-ALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp CCT-THHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred ccc-cHHHHHHHHHHHHhcCCcccChHHH
Confidence 7 8999999999999998887665433
No 242
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.65 E-value=1.6e-08 Score=93.95 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=41.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ .| ++|||||
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~-~~g~afV 86 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL-KK-NFRFARI 86 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-SSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcEEEEE
Confidence 3566799999999999999999999999999999999985 33 5899997
No 243
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=1.1e-07 Score=78.90 Aligned_cols=105 Identities=8% Similarity=-0.075 Sum_probs=93.5
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013659 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
+|++.+.|...+......|+++.+..+|++++..+|.++..|......+.. .+..+.+...|++|+...|.....|...
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 567899999999999999999999999999999999999999999987764 4567889999999999999999999998
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
...+. ..+..+++...|++++...+.
T Consensus 111 g~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 111 GQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 87555 478899999999999986654
No 244
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.4e-08 Score=79.10 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=37.2
Q ss_pred CceEEE--eCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFL--SNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+||| ||||+++|+++|+++|++||.|.+|.|+. +||||||
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV 68 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFA 68 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEE
Confidence 358999 77999999999999999999999998764 2799997
No 245
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=5.5e-07 Score=74.32 Aligned_cols=117 Identities=8% Similarity=-0.075 Sum_probs=98.6
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013659 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
..+...|+.+|...|. +...|...+......|+++.+...|++++...|.++..|......+.. .+..+.+...|
T Consensus 4 ~~~~~~~~~al~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 78 (148)
T 2vgx_A 4 GSGGGTIAMLNEISSD----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSY 78 (148)
T ss_dssp --CCCSHHHHTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred cchhhhHHHHHcCCHh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 3455678888877654 888999999999999999999999999999999999999998886664 45678899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
++|+...|.....|......+. ..+..+++...|++++...+
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999988877554 47889999999999997543
No 246
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.62 E-value=3.5e-08 Score=76.20 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+++|+++|+++|++||.|.+|+++ +|||||
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV 50 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFI 50 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEE
Confidence 45699999999999999999999999999999886 468887
No 247
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.60 E-value=2.7e-08 Score=74.19 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=39.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCC----C-------CeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDV----G-------GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||||+++|+++|+++|+.| | .|.+++++.+ +|||||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV 58 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFL 58 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEE
Confidence 345799999999999999999999999 8 8999988754 699997
No 248
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=1.5e-05 Score=70.38 Aligned_cols=183 Identities=11% Similarity=-0.001 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH---HHHH
Q 013659 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---LWVR 97 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~---lW~~ 97 (438)
..|...+......|+++.+...|++++...|.++ ..|...+..... .++.+.+...|+++++..|.+.. .|..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455556666778999999999999999988764 567666655553 45678899999999999998754 3332
Q ss_pred HHHHHHH-----------------ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHH
Q 013659 98 SLLSLER-----------------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (438)
Q Consensus 98 y~~~le~-----------------~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (438)
....+.. ..+..+.+...|++++...+.+...... ...+. .+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a--~~~l~-------------------~~ 142 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA--TKRLV-------------------FL 142 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH--HHHHH-------------------HH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH--HHHHH-------------------HH
Confidence 2222221 1234566667777766554432110000 00000 00
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH---HHHHHHHHHHHhcccHHHHH
Q 013659 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEAR 237 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~---~~W~~y~~~e~~~g~~~~ar 237 (438)
.. . ........+.+....| +++.|...|+++++.+|++. +.|..........|+++.|.
T Consensus 143 ~~-------~----------~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 143 KD-------R----------LAKYEYSVAEYYTERG-AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HH-------H----------HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH-------H----------HHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 00 0 0012234566667788 89999999999999988765 57888888888999999999
Q ss_pred HHHHHHHhc
Q 013659 238 SIYKRCYSK 246 (438)
Q Consensus 238 ~i~~ral~~ 246 (438)
..|+++...
T Consensus 205 ~~~~~l~~~ 213 (225)
T 2yhc_A 205 KVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998873
No 249
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.60 E-value=3.7e-08 Score=89.82 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=45.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+.+|+++|+.+|+.||.|.+|+++.+ .+|+++|||||
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV 142 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFV 142 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEE
Confidence 569999999999999999999999999999999999 69999999997
No 250
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.8e-08 Score=75.64 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEE-EeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIR-ILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~-~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+.+|+.||.|.+++ ++.++.+|+ |||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV 59 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNV 59 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEE
Confidence 3457999999999999999999999999999994 888865554 665
No 251
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1e-07 Score=72.67 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV 54 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFV 54 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEE
Confidence 45679999996 89999999999999999999884 56899997
No 252
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=2.2e-05 Score=73.46 Aligned_cols=189 Identities=11% Similarity=0.056 Sum_probs=132.4
Q ss_pred HhcCCh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013659 34 QSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 34 ~~~g~~-~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~---------~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
...|+. +++..+++.+|..+|.+..+|..--..+..-... .+.....++.++...|.+..+|....-.+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 345665 4899999999999999999999888777643321 345788999999999999999999887777
Q ss_pred HccC-CHHHHHHHHHHHHhCCcccHHH--HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch
Q 013659 104 RSRA-SEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (438)
Q Consensus 104 ~~~~-~~~~~~~i~~ral~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (438)
.... ..++...++.+++...+.++.. +..+.... + .. .++.+++++...+..++.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-------l---------~~------~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-------A---------AV------APAEELAFTDSLITRNFS 177 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------T---------TC------CHHHHHHHHHHHHHHCSC
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------h---------Cc------CHHHHHHHHHHHHHHCCC
Confidence 6543 3677888999999877764332 22222111 1 00 124445555555554667
Q ss_pred hHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-c-c----------cHHH
Q 013659 181 LLRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIE-L-D----------HINE 235 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~-------------~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~-~-g----------~~~~ 235 (438)
....|.+-..+...+. +.++.+.+.+.+++..+|++...|. |..+... . | -++.
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~-Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF-YHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH-HHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHhccCccccchHHHHHHHH
Confidence 7778888777666552 1367899999999999999999994 4443333 2 2 3577
Q ss_pred HHHHHHHHHh
Q 013659 236 ARSIYKRCYS 245 (438)
Q Consensus 236 ar~i~~ral~ 245 (438)
+...+..++.
T Consensus 257 el~~~~elle 266 (331)
T 3dss_A 257 ELESCKELQE 266 (331)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888887
No 253
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.57 E-value=5.4e-08 Score=89.93 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=46.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 142 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFA 142 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEE
Confidence 469999999999999999999999999999999999889999999997
No 254
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.5e-08 Score=75.48 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=36.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCC-eeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV 49 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFV 49 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEE
Confidence 34569999999999999999999999999 5555552 4799997
No 255
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=2.4e-05 Score=73.16 Aligned_cols=229 Identities=9% Similarity=-0.018 Sum_probs=153.5
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK- 72 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~----------~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~- 72 (438)
+-..++.+|..+|. ++.+|..=.......|. +.....+++.+|..+|.++.+|..-.-.+..-+.
T Consensus 49 aL~~t~~~L~~nP~----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 49 VLELTSQILGANPD----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHTTCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHCch----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 44667788888876 89999876665554443 4677889999999999999999988876664332
Q ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccH--HHHHHHHHHHHHHHHHhhhcccc
Q 013659 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFSGE 150 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~--~~~~~~~~~~~~~l~rr~~~~~~ 150 (438)
..+....++++++...|.....|......+...+...++..+.+.+++...+.+. |.+....+. ++.....
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~-------~l~~~~~ 197 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-------QLHPQPD 197 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-------HHSCCC-
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------Hhhhccc
Confidence 2467889999999999999999998876666644445777788889898777643 333332221 1111000
Q ss_pred cchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHhccchHHHH
Q 013659 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK----------DMVSARGVWERLLKISGAMLEAW 220 (438)
Q Consensus 151 ~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~----------~~~~ar~i~e~~l~~~~~~~~~W 220 (438)
...... .-...++++++++..++...|.....|.+..-+.....+ -++.+.+.++.++...|++.-..
T Consensus 198 ~~~~~~--~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 198 SGPQGR--LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp -----C--CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 000000 001456677777777766566667788876555544421 36789999999999999885444
Q ss_pred HHHHHHHHh---cccHHHHHHHHHHHHh
Q 013659 221 QSYISMEIE---LDHINEARSIYKRCYS 245 (438)
Q Consensus 221 ~~y~~~e~~---~g~~~~ar~i~~ral~ 245 (438)
...+.+... .|..+.++.+|.+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 444444332 4667889999999886
No 256
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.57 E-value=4.7e-08 Score=81.09 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=40.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....+|||+|||+.+|+++|+++|++||.|.+|.|+.+ +++|||||
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFV 89 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALL 89 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEE
Confidence 33458999999999999999999999999999998654 25799997
No 257
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=5.2e-07 Score=83.07 Aligned_cols=195 Identities=11% Similarity=-0.032 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
....|...+......|+++.+..+|+++|...|.+..+|...+..+.. .+..+.+...|++|+...|....+|..+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788888888899999999999999999999999999999987764 4577889999999999999999999998876
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccHHHHH-HHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch
Q 013659 102 LERSRASEEEISTVFEKSLLCAFSTFEEYL-DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~~~~~-~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (438)
+.. .+..+++...|++++...+.....+. .++... +..-........... .+.
T Consensus 82 ~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--~~~ 135 (281)
T 2c2l_A 82 QLE-MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----------------------RIAKKKRWNSIEERR--IHQ 135 (281)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----------------------HHHHHHHHHHHHHTC--CCC
T ss_pred HHH-cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----------------------HHHHHHHHHHHHHHH--Hhh
Confidence 554 67899999999999965432100000 011000 000000000011111 111
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhc
Q 013659 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-DHINEARSIYKRCYSK 246 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~-g~~~~ar~i~~ral~~ 246 (438)
...+...+..+. .+ +.+.|.+.|+.++...|++..+......+.... +.++.|..+|.++...
T Consensus 136 ~~~i~~~l~~l~--~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 136 ESELHSYLTRLI--AA-ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCHHHHHHHHHH--HH-HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hHHHHHHHHHHH--HH-HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222444444443 35 789999999999999998887777777776666 6789999999998863
No 258
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.56 E-value=4.3e-08 Score=86.49 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+|||+|||+++|+++|+++|+.||.|.+++|+.|+ +.++|||||
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV 148 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV 148 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEE
T ss_pred ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEE
Confidence 489999999999999999999999999999999983 457999997
No 259
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.9e-06 Score=72.82 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=101.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccch--hHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG--NVVRDV 80 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~--~~~~~i 80 (438)
++...|+.+|...|. +...|..++......|+++.+...|++++...|.++.+|..++..+....+.. +.+...
T Consensus 28 ~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 28 AQLQALQDKIRANPQ----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp CCCHHHHHHHHHCCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 456788999988886 67789999999999999999999999999999999999999998744344454 779999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 81 ~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
|++++...|....+|..+...+.. .++.+.+...|++++...+.
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAFM-QANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCC
Confidence 999999999999999988775544 68899999999999987665
No 260
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=1.5e-06 Score=70.91 Aligned_cols=104 Identities=9% Similarity=-0.055 Sum_probs=90.7
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013659 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
+|++...|...+......|+++.+..+|++++...|.++.+|......+.. .+..+.+...|++|+...|....+|...
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 455888999999989999999999999999999999999999999887664 4567889999999999999999999888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 99 LLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
...+. ..+..+++...|++++...+
T Consensus 93 g~~~~-~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 93 AECHL-QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 77555 47889999999999997644
No 261
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.51 E-value=2.9e-05 Score=71.24 Aligned_cols=180 Identities=12% Similarity=0.102 Sum_probs=125.0
Q ss_pred cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013659 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~--------~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~ 123 (438)
..|....+|...+..+... ++.+.+..+|++++.. .|....+|......+. ..+..+.+...|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQ-GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 3456667777777766544 5677899999999984 4555567777666444 4788999999999998642
Q ss_pred -----cccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCC
Q 013659 124 -----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGK 197 (438)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~ 197 (438)
.... .....+.... .+... ..++......|.+++......... .+....++...+.+....+
T Consensus 100 ~~~~~~~~~-~~~~~~~~l~-~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~- 167 (311)
T 3nf1_A 100 EKTLGKDHP-AVAATLNNLA-VLYGK---------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG- 167 (311)
T ss_dssp HHHHCTTCH-HHHHHHHHHH-HHHHT---------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-
T ss_pred HHHhCCCCh-HHHHHHHHHH-HHHHH---------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-
Confidence 1101 1111111111 11111 145666777788887776544332 2344567888888888888
Q ss_pred CHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 198 DMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~--------~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+++.|..+|++++.. .|....+|...+.+....|+++.|..+|++++.
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999988 566667888999999999999999999999996
No 262
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.51 E-value=1.2e-07 Score=75.73 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=38.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcce-eeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVS-FFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv 438 (438)
.-..|||+|||+.+|+++|+++|++||.|.+|+++.+ ++|| |||
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFV 71 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALL 71 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEE
Confidence 3458999999999999999999999999999988764 3688 997
No 263
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.50 E-value=1.6e-06 Score=71.55 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=84.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|..+|. +..+|..++......|+++.+...|+++|..+|.++..|...+..+...+...+.+...++
T Consensus 49 ~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 49 LAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 467889999988886 7889999999999999999999999999999999999999999887765544444555679
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHc
Q 013659 83 RATKNCPWVGELWVRSLLSLERS 105 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~ 105 (438)
+|++..|....+|......+...
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHh
Confidence 99999999999998877766543
No 264
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=3.3e-06 Score=85.77 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=93.5
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|..++......|+++.+...|++++...|.+...|..++..+... +..+.+...|+
T Consensus 7 ~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 81 (568)
T 2vsy_A 7 RELLQLRAAVRHRPQ----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ-QRHAEAAVLLQ 81 (568)
T ss_dssp --------------C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 456678888877775 6788999999999999999999999999999999999999999877644 56788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~ 130 (438)
+|+...|.....|..+...+. ..+..+++...|++++...+.....+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999887554 47889999999999998766654433
No 265
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.48 E-value=1.3e-05 Score=63.17 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|+++.+..+|++++...|.+...|...+...... ++.+.+..+|++++...|....+|..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 3555555555667777777777777777777777666666544432 34455666666666666665555555444222
Q ss_pred ccCCHHHHHHHHHHHH
Q 013659 105 SRASEEEISTVFEKSL 120 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral 120 (438)
..+..+.+..+|++++
T Consensus 81 ~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 2334444444444433
No 266
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.47 E-value=1.3e-07 Score=86.23 Aligned_cols=45 Identities=31% Similarity=0.513 Sum_probs=40.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.++|||||||+++|+++|+.+|+.||.|.+|.++. ++|||||
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV 63 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFI 63 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEE
Confidence 45677999999999999999999999999999999864 4699997
No 267
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.47 E-value=1.2e-05 Score=72.59 Aligned_cols=180 Identities=11% Similarity=-0.045 Sum_probs=111.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhh-------cc
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKT-------LK 72 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~-------~~ 72 (438)
+|...|+.+|...|. ++....+|...+......|+++.++..|+++|..+|.+ +..|...+...... .+
T Consensus 33 ~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 33 RAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 467788999988875 12226688888888889999999999999999998865 44555555544430 45
Q ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccc
Q 013659 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
..+.+...|++++...|.+...+......... ...+... ++ .+..+ ....
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~--------~~~~~~~----------~~--~la~~---~~~~------- 161 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELVDDATQKIREL--------RAKLARK----------QY--EAARL---YERR------- 161 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH--------HHHHHHH----------HH--HHHHH---HHHT-------
T ss_pred hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH--------HHHHHHH----------HH--HHHHH---HHHc-------
Confidence 67789999999999999887666554321111 1111110 00 00000 0000
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhccchHHHH
Q 013659 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM----------GKDMVSARGVWERLLKISGAMLEAW 220 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~----------~~~~~~ar~i~e~~l~~~~~~~~~W 220 (438)
.++......|++++.... ..+.....+...+.....+ + +++.|...|++++..+|++....
T Consensus 162 --g~~~~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 162 --ELYEAAAVTYEAVFDAYP----DTPWADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp --TCHHHHHHHHHHHHHHCT----TSTTHHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHHCTTCTHHH
T ss_pred --cCHHHHHHHHHHHHHHCC----CCchHHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHHHHHCCCChHHH
Confidence 344444455555544321 1111334555566655544 5 78999999999999999875433
No 268
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.46 E-value=7.7e-08 Score=84.21 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=41.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCe--eEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGV--SSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~~~~~g~~fv 438 (438)
..+|||+|||+++|+++|+++|++||.| .+++++.++ |+++|||||
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV 170 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLL 170 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEE
Confidence 4699999999999999999999999999 899998874 566799997
No 269
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.45 E-value=4.1e-07 Score=72.18 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=36.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcce-eeC
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVS-FFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv 438 (438)
-..|||+|||+.+|+++|+.+|++||.|.+|+|+.. .|| |||
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFV 67 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMV 67 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEE
Confidence 346899999999999999999999999999998652 286 997
No 270
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.43 E-value=1.1e-07 Score=84.34 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=40.6
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 388 FTDECTAFLSNINLKA---------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....+||||||||..+ ++++|+.+|++||.|.+|+|+. +||||||
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV 184 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFV 184 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEE
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEE
Confidence 4567899999999998 7999999999999999999985 3799997
No 271
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.43 E-value=2.2e-07 Score=73.81 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||||+ ++|+++|+.+|+.||.|.+|+++ +++|||||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV 78 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFV 78 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEE
Confidence 34679999996 69999999999999999999885 47899997
No 272
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.42 E-value=1.4e-07 Score=87.50 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=44.4
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHhcCCCCeeEEEEeecCC-CCCCcceeeC
Q 013659 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKF-TGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~~~~~g~~fv 438 (438)
...++|||+|||++ +|+++|+++|+.||.|.+++++.++. ||+++|||||
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV 259 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFM 259 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEE
Confidence 34569999999999 99999999999999999999999865 5999999997
No 273
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.42 E-value=3.1e-06 Score=71.75 Aligned_cols=116 Identities=8% Similarity=-0.078 Sum_probs=89.3
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+...|+.+|...|. +...|..++......|+++.+..+|++++...| ++.++................+...|++
T Consensus 25 A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (176)
T 2r5s_A 25 ALNVIQTLSDELQS----RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQ 99 (176)
T ss_dssp HHHHHHTSCHHHHT----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 45566666666664 788999999999999999999999999999999 8876655443322111112236889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
++...|....+|..+...+.. .+..+++...|++++...+.
T Consensus 100 al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 100 ELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcc
Confidence 999999999999998886554 77889999999999876543
No 274
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.41 E-value=1.4e-07 Score=84.11 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=41.1
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV 77 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALV 77 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEE
Confidence 3457999999999 99999999999999999999999874 789997
No 275
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.41 E-value=8.5e-06 Score=84.71 Aligned_cols=165 Identities=10% Similarity=-0.035 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHHHHhhccchhHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT--------KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl--------~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
+|.++..+.... ...++.+.+...|++++ ...|.+..+|......+.. .+..+++...|++++...+
T Consensus 390 ~p~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 390 DPTDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CTTSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCc
Confidence 455555444322 23456778999999999 7889999999988775443 6889999999999998766
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHH
Q 013659 125 STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (438)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~ 204 (438)
..+..+..+-..+. .. .+++.....|++|+.. .+.....|...+.+....| +++. ..
T Consensus 465 ~~~~a~~~lg~~~~-----~~---------g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~~~~~g-~~~~-~~ 521 (681)
T 2pzi_A 465 WRWRLVWYRAVAEL-----LT---------GDYDSATKHFTEVLDT-------FPGELAPKLALAATAELAG-NTDE-HK 521 (681)
T ss_dssp CCHHHHHHHHHHHH-----HH---------TCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHHT-CCCT-TC
T ss_pred chHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHcC-ChHH-HH
Confidence 65544433222211 11 3455555666666554 4555668888898888889 8999 99
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 205 i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.|++++..+|++...|..........|+++.|...|++++.
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999997
No 276
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.41 E-value=2e-08 Score=85.56 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|||+|||+++|+++|+++|..||.+.. .++.+..+|+++|||||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV 59 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYV 59 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEE
Confidence 45679999999999999999999999998876 34555578999999997
No 277
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.40 E-value=2.6e-07 Score=85.23 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCCceEEEeCCCCCC-CHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKA-TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++ |+++|+++|+.||.|.+++|+.++ +|+++|||||
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV 231 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVL 231 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEE
Confidence 345699999999995 999999999999999999999984 8999999997
No 278
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=5.2e-06 Score=70.14 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=89.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCH--HHH
Q 013659 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE--EEI 112 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~--~~~ 112 (438)
..|+++.+...|++++...|.+...|...+..+.. .++.+.+...|++++...|....+|..+...+....+.. +.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34678888999999999999999999999887764 456778999999999999988888888777533334444 666
Q ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q 013659 113 STVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (438)
Q Consensus 113 ~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (438)
...|++++...+. ...+|...+.+.
T Consensus 101 ~~~~~~al~~~p~-------------------------------------------------------~~~~~~~la~~~ 125 (177)
T 2e2e_A 101 RAMIDKALALDSN-------------------------------------------------------EITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHCTT-------------------------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-------------------------------------------------------cHHHHHHHHHHH
Confidence 6666665543222 223455555566
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHH
Q 013659 193 QSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
...| +++.|...|++++...|++..
T Consensus 126 ~~~g-~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 126 FMQA-NYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHTT-CHHHHHHHHHHHHHTCCTTSC
T ss_pred HHcc-cHHHHHHHHHHHHhhCCCCcc
Confidence 6677 788888888888888776544
No 279
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=1.4e-05 Score=75.13 Aligned_cols=222 Identities=9% Similarity=-0.031 Sum_probs=145.5
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-chhHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-VGNVVRDVY 81 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g-~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~-~~~~~~~i~ 81 (438)
+-..++.+|..+|. ++.+|..=.......| .++....+++.+|..+|.++.+|..-...+....+ ..+....++
T Consensus 73 AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 73 ALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45667888888886 8999998888887788 59999999999999999999999998877765424 566788999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCH-------HHHHHHHHHHHhCCcccHH--HHHHHHHHHHHHHHHhhhcccccc
Q 013659 82 SRATKNCPWVGELWVRSLLSLERSRASE-------EEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~-------~~~~~i~~ral~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
++++...|.....|....-.+....... .+..+.+++++...+.+.. .+..+.+. ++....
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~-------~l~~~~--- 218 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV-------SRPGAE--- 218 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT-------TSTTCC---
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------hccccc---
Confidence 9999999999999988765554432221 2556667788876665433 22222111 110000
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCC-------------------HHHHHHHHHHHHHhc
Q 013659 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD-------------------MVSARGVWERLLKIS 213 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~-------------------~~~ar~i~e~~l~~~ 213 (438)
. ....++++++++.+++...+.....|.+..-+....+.. .....++...++...
T Consensus 219 --~----~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 219 --T----SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp --C----CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred --c----chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 0 023456666776666655667777898877777666633 122222222222221
Q ss_pred ------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 214 ------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 214 ------~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+.+...+-..++.....|+.++|..+|+....
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 23445666666666677888999999998765
No 280
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.38 E-value=3.5e-07 Score=77.74 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=39.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|..+ ..+|+++|||||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV 141 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYI 141 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEE
Confidence 356799999999999999999999999987655 368999999997
No 281
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.37 E-value=5.6e-05 Score=68.07 Aligned_cols=162 Identities=13% Similarity=0.097 Sum_probs=114.1
Q ss_pred cchhHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----cccHHHHHHHHHHHH
Q 013659 72 KVGNVVRDVYSRATKNC--------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRI 138 (438)
Q Consensus 72 ~~~~~~~~i~erAl~~~--------p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~-----~~~~~~~~~~~~~~~ 138 (438)
++++.+...|++|+..+ |....+|......+. ..+..+.+...|++++... ..... ....+....
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~ 92 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPA-VAATLNNLA 92 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHH
Confidence 45667888888888843 434567777665444 4788999999999998642 11111 111111111
Q ss_pred HHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCC-chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Q 013659 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----- 212 (438)
Q Consensus 139 ~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----- 212 (438)
.+.... .++......|.+++.......... +.....+...+.+....| +++.|..+|++++..
T Consensus 93 -~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 93 -VLYGKR---------GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp -HHHHTT---------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHh---------ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Confidence 111111 466777788888888776554433 445678888898988888 899999999999998
Q ss_pred ---ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 213 ---SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 213 ---~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.|....+|..........|+++.|..+|++++..
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666778889999999999999999999999963
No 282
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.7e-05 Score=62.78 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
....|...+......|+++.+...|+++|..+|.++.+|...+..+.. .+..+.+...|++|+...|.....|......
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 556788888888899999999999999999999999999999987764 4567889999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCC
Q 013659 102 LERSRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~ 123 (438)
+.. .+..+++...|++++...
T Consensus 82 ~~~-~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIA-VKEYASALETLDAARTKD 102 (126)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHH-HhCHHHHHHHHHHHHHhC
Confidence 554 788999999999999765
No 283
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=9.3e-06 Score=67.73 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=91.4
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHH
Q 013659 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~ 99 (438)
+.+...|...+......|+++.++.+|+++|..+|.+..+|......+.. .+..+.+...|++|+...|.....|..+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677899999999999999999999999999999999999999987764 45678899999999999999999999988
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
..+.. .+..+.+...|++++...+.
T Consensus 87 ~~~~~-~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFD-MADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHH-ccCHHHHHHHHHHHHHhCCC
Confidence 75554 78899999999999976555
No 284
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.34 E-value=1.1e-05 Score=70.47 Aligned_cols=114 Identities=9% Similarity=-0.027 Sum_probs=88.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHH----------------HHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMI----------------YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQY 66 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~----------------Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~ 66 (438)
+|...|+.+|...|. +...|.. .+......|+++.+...|+++|..+|.++..|......
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 22 QAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp HHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 456778888887764 6777777 78878889999999999999999999999999999987
Q ss_pred HHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHh
Q 013659 67 LDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR-ASEEEISTVFEKSLL 121 (438)
Q Consensus 67 l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~-~~~~~~~~i~~ral~ 121 (438)
+... +..+.+...|++++...|.....|......+.... .....+...|.+++.
T Consensus 98 ~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 98 QVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 7754 56788999999999999999999988776543221 223445666766654
No 285
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=2e-06 Score=81.38 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|...+.+....+ +++.|...|++++..+|++...|..........|+++.|...|++++.
T Consensus 199 ~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 199 HLNLAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444555555 666666666666666666666666666666666666666666666665
No 286
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.33 E-value=1.6e-05 Score=62.69 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=96.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|..++..+.. .++.+.+..+|+
T Consensus 19 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~ 93 (136)
T 2fo7_A 19 EAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQ 93 (136)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 456778888877664 566888888888888999999999999999999999999999887664 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013659 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~ 123 (438)
+++...|....+|...+..+. ..++.+.+...|++++...
T Consensus 94 ~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 94 KALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCChHHHHHHHHHHH-HHccHHHHHHHHHHHHccC
Confidence 999999999999988877554 4778899999999988644
No 287
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.33 E-value=7.4e-07 Score=68.73 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=40.6
Q ss_pred CceEEEeCCCC-----CCCHHHHHHHhcCCCCeeEEEEeecCCC-CCCcceeeC
Q 013659 391 ECTAFLSNINL-----KATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~~fv 438 (438)
.++|+|+|+.. +-++++|++.|++||.|.+|.|+.++.+ |+++|||||
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV 61 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFL 61 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEE
Confidence 45999999963 2378999999999999999999998654 789999997
No 288
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=6.5e-07 Score=66.23 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=31.2
Q ss_pred eEEEeCCCCCCCHHH----HHHHhcCC-CCeeEEEEeecCCCCCCcceeeC
Q 013659 393 TAFLSNINLKATYED----LRRFFSDV-GGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+|||+|||+.+++++ |+++|++| |.|.+| +| |||||
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV 51 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAIL 51 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEE
Confidence 499999999999988 55899999 599888 34 99997
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=98.32 E-value=2.3e-05 Score=64.65 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=83.4
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CCh-hhHHHHHHHHHhcCCCC---------HHHHHHHHHHHHhh
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDP-GRVQLLYERAITDFPVS---------SDLWLDYTQYLDKT 70 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~---g~~-~~~~~~yERal~~~p~~---------~~lW~~Y~~~l~~~ 70 (438)
.|..||..|..... .+-++.|..||.|...+ |.. .....++|||+..+..+ ..+|+.|+++.
T Consensus 2 ~r~~fE~~i~~~~g--dDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 76 (164)
T 2wvi_A 2 QKRAFEYEIRFYTG--NDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC--- 76 (164)
T ss_dssp CTHHHHHHCCCCCS--SCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHhhcCC--CCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---
Confidence 47889999974332 33478899999998763 222 24577999999976543 37999999874
Q ss_pred ccchhHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 71 LKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~--~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
.+ ...+|.....+ +-....+|..|+.++|. .++...+..||..++...-.
T Consensus 77 -~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp -SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCB
T ss_pred -CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 22 45677777763 45678999999999997 67899999999999976533
No 290
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.32 E-value=8e-05 Score=71.25 Aligned_cols=224 Identities=10% Similarity=-0.013 Sum_probs=138.7
Q ss_pred hhhHhHHHHHhcCCCC--ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhhccc
Q 013659 3 NARAHLEEQISRQDLS--DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-------DLWLDYTQYLDKTLKV 73 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~--~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-------~lW~~Y~~~l~~~~~~ 73 (438)
+|...|+.++...... ++.....|...+......|+++.+...|++|+...+... ..+...+.... ..+.
T Consensus 121 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~ 199 (383)
T 3ulq_A 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQ 199 (383)
T ss_dssp HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcC
Confidence 3556677777542211 123455788888878888999999999999998644332 23443343333 3456
Q ss_pred hhHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-cccHHHHHHHHHHHHHHH
Q 013659 74 GNVVRDVYSRATKNCPWVG------ELWVRSLLSLERSRASEEEISTVFEKSLL-----CA-FSTFEEYLDLFLTRIDGL 141 (438)
Q Consensus 74 ~~~~~~i~erAl~~~p~~~------~lW~~y~~~le~~~~~~~~~~~i~~ral~-----~~-~~~~~~~~~~~~~~~~~l 141 (438)
.+.+...|++|+..+|... .+|..... +....+..+.+...|++|+. .. +.....+..+-..+
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~---- 274 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL-CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH---- 274 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH----
Confidence 7889999999998764322 35555444 34447888999999999987 23 22211122111111
Q ss_pred HHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhccchHH
Q 013659 142 RRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 142 ~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~e~~l~~~~~~~~ 218 (438)
.+. .++......|++|+......- .+.....+...+.+....+ + +..|..++++. ...+....
T Consensus 275 -~~~---------g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 275 -YKL---------GKIDKAHEYHSKGMAYSQKAG--DVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp -HHT---------TCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred -HHC---------CCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHC-cCHHHHHH
Confidence 111 456666777777777654321 1222222344555655566 6 56666666665 22444456
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 219 ~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
++...+.+....|+++.|...|++++..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7888888889999999999999999963
No 291
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.9e-05 Score=59.82 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
....|...+......|+++.+..+|++++...|.++.+|...+...... ++.+.+...|++++...|....+|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4567888888888899999999999999999999999999999877644 567889999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccH
Q 013659 102 LERSRASEEEISTVFEKSLLCAFSTF 127 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~ 127 (438)
+.. .+..+.+...|++++...+...
T Consensus 82 ~~~-~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 82 LEF-LNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHH-TTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHH-HhhHHHHHHHHHHHHHcCCCCH
Confidence 554 7789999999999998766543
No 292
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=5.9e-05 Score=69.49 Aligned_cols=214 Identities=12% Similarity=0.131 Sum_probs=130.3
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCCHHH
Q 013659 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW------VGELWVRSLLSLERSRASEEE 111 (438)
Q Consensus 38 ~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~------~~~lW~~y~~~le~~~~~~~~ 111 (438)
+++.+...|+++... ....+..+.+...|++|+...+. ....|......+ ...++.++
T Consensus 32 ~~~~A~~~~~~a~~~---------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQAATI---------------YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred cHHHHHHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHCCCHHH
Confidence 378888899888431 12335667788999999886432 235677765544 44678899
Q ss_pred HHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Q 013659 112 ISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWA 189 (438)
Q Consensus 112 ~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a 189 (438)
+...|++|+..... ........+.. +..+.... ..++......|++|+.+.... ........++...+
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~-lg~~~~~~--------lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFE-LGEILEND--------LHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA 165 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHT--------TCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHh--------hcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 99999999964322 11111111111 11111110 045666667788887765421 01111235677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccchH-------HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH----HHHH
Q 013659 190 HLEQSMGKDMVSARGVWERLLKISGAML-------EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE----DICH 258 (438)
Q Consensus 190 ~~e~~~~~~~~~ar~i~e~~l~~~~~~~-------~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~----~i~~ 258 (438)
.+....| +++.|..+|++++...|+.. ..|..........|+++.|...|++++.. .++.+. .++.
T Consensus 166 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 166 DLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHH
T ss_pred HHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHH
Confidence 8988999 89999999999999866542 25666777777889999999999999973 222221 1122
Q ss_pred HHHHHHHHhCCHHHHHHHHHhhh
Q 013659 259 AWLRFEREYGTLEDFDHSVQKVT 281 (438)
Q Consensus 259 ~~~~fE~~~G~~~~~~~a~~~~~ 281 (438)
..... ...|+.+.+..|+..+.
T Consensus 243 ~l~~~-~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 243 SLIDA-VNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHH-HHTTCTTTHHHHHHHHT
T ss_pred HHHHH-HHcCCHHHHHHHHHHhc
Confidence 22221 12467777777776653
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.8e-05 Score=66.06 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=86.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CCh---hhHH-HHHHHHHhcCCC---------CHHHHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDP---GRVQ-LLYERAITDFPV---------SSDLWLDYTQY 66 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~---g~~---~~~~-~~yERal~~~p~---------~~~lW~~Y~~~ 66 (438)
..|..||..|...-+..++-++.|..||.|.... |.. .... .++|||+..+-. ...+|+.|+++
T Consensus 10 ~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~ 89 (202)
T 3esl_A 10 QTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINL 89 (202)
T ss_dssp HHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh
Confidence 5799999999882111123478899999998754 332 2345 799999985433 34799999998
Q ss_pred HHhhccchhHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 67 LDKTLKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 67 l~~~~~~~~~~~~i~erAl~~--~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
+.. .+......+|....++ .-....+|..|+.++|. .++...|..||+.++...-
T Consensus 90 ~~~--~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 90 FLS--NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HST--TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTC
T ss_pred hcc--cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Confidence 621 1123466788887774 45678999999999997 6889999999999997653
No 294
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.29 E-value=8.3e-06 Score=65.09 Aligned_cols=93 Identities=13% Similarity=-0.044 Sum_probs=82.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|...+......|+++.++..|++||..+|.++..|...+..+.. .+..+.+...|+
T Consensus 31 ~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~ 105 (126)
T 4gco_A 31 TAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 467788999988886 788999999999999999999999999999999999999999987764 467788999999
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLL 100 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~ 100 (438)
+|++..|....++..+..
T Consensus 106 ~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 106 DALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHHCcCCHHHHHHHHH
Confidence 999999999888877543
No 295
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.29 E-value=0.00017 Score=68.58 Aligned_cols=229 Identities=11% Similarity=-0.031 Sum_probs=128.0
Q ss_pred hhhHhHHHHHhcCCCCChH-hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH------HHHHHHHHhhccchh
Q 013659 3 NARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLW------LDYTQYLDKTLKVGN 75 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~-~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW------~~Y~~~l~~~~~~~~ 75 (438)
.++..++.+|...|..++. ....+..........|+++.+...|++++...|.....+ ...... ....++.+
T Consensus 32 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~G~~~ 110 (373)
T 1hz4_A 32 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI-LFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHCCCHH
Confidence 3566778888766543221 112444455555667899999999999988654332221 222222 22345667
Q ss_pred HHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHHHHhhh
Q 013659 76 VVRDVYSRATKNCP--------WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRIL 146 (438)
Q Consensus 76 ~~~~i~erAl~~~p--------~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-~~~~~~~~~~~~~~~l~rr~~ 146 (438)
.+...|++++...+ .....+..... +....++.+++...+++++..... ........+.. ...+...
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-la~~~~~-- 186 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ-LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSLA-- 186 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH-HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH-HHHHHHH--
Confidence 78888888887542 12233433333 333467888899999998854322 00001111111 1111101
Q ss_pred cccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHhccch----HHHH
Q 013659 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY--AYWAHLEQSMGKDMVSARGVWERLLKISGAM----LEAW 220 (438)
Q Consensus 147 ~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~--~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~----~~~W 220 (438)
..++......+++++...... ..+..+... ...+.+....| +++.|+..++.++...+.. ...+
T Consensus 187 -------~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 187 -------RGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp -------HTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred -------cCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 144555566666666553221 111111111 11233345667 8999999999988764321 2356
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 221 QSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 221 ~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
...+......|+++.|..++++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67777888889999999999998863
No 296
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=2.7e-05 Score=61.62 Aligned_cols=106 Identities=16% Similarity=0.055 Sum_probs=91.7
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013659 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
.+.....|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|++++...|....+|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 345778999999999999999999999999999999999999999987654 4567889999999999999999999998
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013659 99 LLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
...+.. .+..+.+...|++++...+..
T Consensus 91 a~~~~~-~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 91 AAALEA-MKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHhCCCc
Confidence 875554 678999999999999766553
No 297
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.29 E-value=0.00017 Score=68.97 Aligned_cols=201 Identities=12% Similarity=0.025 Sum_probs=125.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc---CCC---CHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH-------HHH
Q 013659 29 YLKYEQSSGDPGRVQLLYERAITD---FPV---SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG-------ELW 95 (438)
Q Consensus 29 Y~~~e~~~g~~~~~~~~yERal~~---~p~---~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~-------~lW 95 (438)
.+.+....|+++.+...|++|+.. .+. ...+|...+.... ..++.+.+...|++|+..++... ..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 344556789999999999999986 333 2355665555444 44677889999999999765432 244
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhh
Q 013659 96 VRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (438)
Q Consensus 96 ~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~ 173 (438)
..... +....+..+.+...|++|+..... ........+ ..++.+.... .++......|.+|+.+...
T Consensus 188 ~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 188 SLFAT-NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL-YNIGLCKNSQ---------SQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHT---------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHH-HHHHHHHHHC---------CCHHHHHHHHHHHHHHHHh
Confidence 44333 334468899999999999964222 111111111 1111221111 4566666777777776543
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHhccc---HHHHHHHHHHH
Q 013659 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDH---INEARSIYKRC 243 (438)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-----~~~~~W~~y~~~e~~~g~---~~~ar~i~~ra 243 (438)
.. ..+.....+...+.+....| +++.|...|++++...+ .....+.....+....|+ +..|..+++++
T Consensus 257 ~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 257 SN-ILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp TT-CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hc-cchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 21 11445667888888888899 89999999999998732 222223334445555677 66666666665
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=98.28 E-value=2.1e-05 Score=63.99 Aligned_cols=112 Identities=13% Similarity=0.206 Sum_probs=86.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CChhhHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhh
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDPGRVQLLYERAITDFPV---------SSDLWLDYTQYLDKT 70 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~---g~~~~~~~~yERal~~~p~---------~~~lW~~Y~~~l~~~ 70 (438)
..|..||..|..... ++-++.|..||.|...+ |. .....++|||+..+.. ...+|+.|+++..
T Consensus 8 ~~~~~fE~~i~~y~g--dDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~-- 82 (152)
T 4a1g_A 8 NVLQMLEAHMQSYKG--NDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNS-- 82 (152)
T ss_dssp HHHHHHHHHTTSCCS--SCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS--
T ss_pred HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcC--
Confidence 367889999988643 23478899999999864 33 3477899999986543 3479999998642
Q ss_pred ccchhHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 71 LKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~--~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
+ ...+|....++ .-....+|..|+.++|. .++...|..||+.+++..-.
T Consensus 83 --d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 83 --D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp --C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCB
T ss_pred --C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCc
Confidence 2 56788887774 35678999999999997 68899999999999976443
No 299
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=0.00014 Score=59.95 Aligned_cols=104 Identities=10% Similarity=-0.095 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
....|...+......|+++.+...|++++...|.+..+|...+..+.. .+..+.+...|++++...|....+|......
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 455788888888889999999999999999999999999999987664 4567889999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccH
Q 013659 102 LERSRASEEEISTVFEKSLLCAFSTF 127 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~ 127 (438)
+.. .+..+.+...|++++...+...
T Consensus 91 ~~~-~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 91 NMA-LGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHH-hccHHHHHHHHHHHHHhCCCCH
Confidence 554 7889999999999998766543
No 300
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=5e-05 Score=59.56 Aligned_cols=105 Identities=16% Similarity=0.046 Sum_probs=90.4
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHH
Q 013659 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~ 99 (438)
+.....|...+......|+++.+..+|++++...|.+..+|...+..+.. .+..+.+...|++++...|....+|..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45677888888888899999999999999999999999999999987764 45678899999999999999999999888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCccc
Q 013659 100 LSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
..+. ..+..+.+...|++++...+..
T Consensus 88 ~~~~-~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 88 LALS-SLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHH-HhCCHHHHHHHHHHHHhcCccc
Confidence 7555 4788999999999999876654
No 301
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.22 E-value=8.2e-05 Score=65.54 Aligned_cols=177 Identities=11% Similarity=-0.027 Sum_probs=110.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH---HHHHHHHHHHh----------
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---LWLDYTQYLDK---------- 69 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~---lW~~Y~~~l~~---------- 69 (438)
+|...|+..|...|.. +....+|...+......|+++.++..|++++..+|.++. .|..-......
T Consensus 22 ~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 22 QAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 4678889999887742 223457777788788899999999999999999999875 33322222211
Q ss_pred -------hccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Q 013659 70 -------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR 142 (438)
Q Consensus 70 -------~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~ 142 (438)
..+..+.+...|++++...|.+...|..+...... ...+.. ....+..+ + +
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~--------~~~~~~--------~~~~~a~~--~---~- 158 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL--------KDRLAK--------YEYSVAEY--Y---T- 158 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH--------HHHHHH--------HHHHHHHH--H---H-
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH--------HHHHHH--------HHHHHHHH--H---H-
Confidence 12456779999999999999988777654331111 000000 00000000 0 0
Q ss_pred HhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH
Q 013659 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML 217 (438)
Q Consensus 143 rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~ 217 (438)
+ ..++......|++++.... +.+.....+...+.....+| +.+.|+..++.+....|+..
T Consensus 159 -~---------~~~~~~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g-~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 159 -E---------RGAWVAVVNRVEGMLRDYP----DTQATRDALPLMENAYRQMQ-MNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -H---------HTCHHHHHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCCSCCC
T ss_pred -H---------cCcHHHHHHHHHHHHHHCc----CCCccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCch
Confidence 0 0344444455555544321 12222357777888888899 89999999999988877643
No 302
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=1.5e-05 Score=62.97 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|+++.+...|+++|..+|.+...|......+.. .+..+.+...|++|+...|.....|......+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 466777777789999999999999999999999999999887764 4567889999999999999999999888775554
Q ss_pred ccCCHHHHHHHHHHHHhCCcc
Q 013659 105 SRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~ 125 (438)
.+..+++...|++++...+.
T Consensus 98 -~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 -EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -cCCHHHHHHHHHHHHHhCcC
Confidence 56788899999999976543
No 303
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1e-05 Score=61.81 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC--CHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~--~~~lW~~y~ 99 (438)
+...|...+......|+++.+..+|++++...|.+..+|..++..+... +..+.+...|++++...|. ...+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4557888888888899999999999999999999999999999877644 5678899999999999999 899999988
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHhCCcc
Q 013659 100 LSLERSR-ASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 100 ~~le~~~-~~~~~~~~i~~ral~~~~~ 125 (438)
..+. .. +..+++...|++++...+.
T Consensus 84 ~~~~-~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALR-YIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHT-TCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHH-HHhCCHHHHHHHHHHHhhcccC
Confidence 7544 46 7889999999999976553
No 304
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.18 E-value=1e-06 Score=82.53 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=36.8
Q ss_pred CceEEEeC--CCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 391 ECTAFLSN--INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+||||| |++.+|+++|+++|++||.|.+|.++. +||||||
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV 61 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFA 61 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEE
Confidence 45999999 589999999999999999999887653 4799998
No 305
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=8.8e-05 Score=75.12 Aligned_cols=176 Identities=10% Similarity=0.041 Sum_probs=128.6
Q ss_pred hcCC-hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 35 SSGD-PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 35 ~~g~-~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~---------~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
..|. .++|..+|+++|..+|.+..+|..-...+..-+.+ .+.+...+++++...|.+..+|....-.+..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444 46889999999999999999999888777654332 5678899999999999999999998776665
Q ss_pred ccC-CHHHHHHHHHHHHhCCcccHHH--HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchh
Q 013659 105 SRA-SEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (438)
Q Consensus 105 ~~~-~~~~~~~i~~ral~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~ 181 (438)
... ..++....+++++...+.++.. +..+... ++ . ..++++++++..++..++..
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-------~l---------~------~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAA-------QA---------A------VAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------HT---------C------CCHHHHHHHHHTTTTTTCCC
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-------Hc---------C------CChHHHHHHHHHHHHHCCCC
Confidence 332 4578889999999887764332 2221111 11 0 02456777777777777777
Q ss_pred HHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc
Q 013659 182 LRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~-------------~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~ 232 (438)
...|.+-..+...++ +.++.+.+.+.+++...|++...|..+--+....+.
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 889998777766541 146899999999999999999999665555544444
No 306
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=3.5e-05 Score=61.62 Aligned_cols=101 Identities=13% Similarity=-0.077 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+...|...+......|+++.+...|++++...|.++.+|..++..+.. .++.+.+...|++++...|.....|......
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999987764 4567889999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCCc
Q 013659 102 LERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~ 124 (438)
+.. .+..+.+...|.+++...+
T Consensus 87 ~~~-~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLE-MESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHHHHHHHHHHCh
Confidence 554 7888999999999996543
No 307
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.17 E-value=0.0001 Score=57.13 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
...|...+......|+++.+..+|++++...|.+..+|..++..+... +..+.+..+|++++...|....+|......+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567888888888899999999999999999999999999999877644 5678899999999999999999998888755
Q ss_pred HHccCCHHHHHHHHHHHHhCCcccH
Q 013659 103 ERSRASEEEISTVFEKSLLCAFSTF 127 (438)
Q Consensus 103 e~~~~~~~~~~~i~~ral~~~~~~~ 127 (438)
. ..+..+.+...|++++...+...
T Consensus 88 ~-~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 Y-KQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred H-HhcCHHHHHHHHHHHHHhCCCcH
Confidence 5 46789999999999997766543
No 308
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=1.3e-05 Score=65.84 Aligned_cols=77 Identities=1% Similarity=-0.157 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013659 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (438)
Q Consensus 44 ~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~ 122 (438)
..|++++...|.+...|...+..+... +..+.+...|++++...|....+|..+...+. ..+..+++...|++++..
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 357788888888888888877766644 45667888888888888888888877665443 356666666766666643
No 309
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.17 E-value=2e-06 Score=79.11 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=40.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||..+|+++|+++|+.||.|.+|+++.++ +|||||
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV 249 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFV 249 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEE
Confidence 356799999999999999999999999999999999763 589997
No 310
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.12 E-value=2.1e-05 Score=63.96 Aligned_cols=77 Identities=4% Similarity=-0.158 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013659 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (438)
Q Consensus 44 ~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~ 122 (438)
..|++++...|.+...|...+..+... +..+.+...|++++...|....+|......+. ..+..+.+...|++++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 466777777777777777777666543 45566778888888888877777777665443 355666666666666543
No 311
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=3.8e-05 Score=69.93 Aligned_cols=187 Identities=7% Similarity=-0.081 Sum_probs=131.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhhccchhHHHHHHHHHHHcCCC-----------C-----
Q 013659 35 SSGDPGRVQLLYERAITDFPVSSDLWLDY-------TQYLDKTLKVGNVVRDVYSRATKNCPW-----------V----- 91 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y-------~~~l~~~~~~~~~~~~i~erAl~~~p~-----------~----- 91 (438)
..+++..+...|.+++..+|...+.|+.. ...|..-.. ...+...+.|++..-|. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 46899999999999999999999999999 455543322 23456677888773331 1
Q ss_pred -----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHH
Q 013659 92 -----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (438)
Q Consensus 92 -----~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~ 166 (438)
..++..|+..+-. .+..+++..+|..++..++... ..|..-+-++ +. .+| ..
T Consensus 97 ~v~~r~dl~LayA~~L~~-~g~y~eA~~~l~~~~~~~p~~~----~~~~~a~l~~--~~---------~r~-------~d 153 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAA-QGNYADAMEALEAAPVAGSEHL----VAWMKAVVYG--AA---------ERW-------TD 153 (282)
T ss_dssp ECSSHHHHHHHHHHHHHH-HTCHHHHHHHHTSSCCTTCHHH----HHHHHHHHHH--HT---------TCH-------HH
T ss_pred ccCCHhHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCchH----HHHHHHHHHH--Hc---------CCH-------HH
Confidence 4688889885554 6789999999998876555432 1121111011 11 233 34
Q ss_pred HHHHHhhhhcCCchh--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--cc-hHHHHHHHHHHHHhcccHHHHHHHHH
Q 013659 167 ASDYLSEQMKNTDGL--LRLYAYWAHLEQSMGKDMVSARGVWERLLKIS--GA-MLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 167 a~~~l~~~~~~~~~~--~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~--~~-~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
++..+.......++. ..++.+.+.....+| +.+.|...|++++... |. ..+.++.........|+.+.|+.+|+
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444433322332 246777788888999 8999999999999653 65 66799999999999999999999999
Q ss_pred HHHhc
Q 013659 242 RCYSK 246 (438)
Q Consensus 242 ral~~ 246 (438)
+++..
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99984
No 312
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.09 E-value=0.00022 Score=65.50 Aligned_cols=165 Identities=9% Similarity=-0.082 Sum_probs=112.5
Q ss_pred cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHH
Q 013659 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~ 166 (438)
..|.....+......+. ..++.+.+..+|++++...+.....++.+-..+. + .+-+++
T Consensus 112 ~lp~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-----~----------------~g~~~~ 169 (287)
T 3qou_A 112 VLPREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-----A----------------LNRSED 169 (287)
T ss_dssp HSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-----H----------------TTCHHH
T ss_pred HcCCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-----H----------------CCCHHH
Confidence 45888788877776444 3688999999999999887776554443332211 0 133456
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
|...+.......+.....+..........+ ..+.|...|++++..+|++..+|..++......|+++.|...|.+++..
T Consensus 170 A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~-~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 170 AEAVLXTIPLQDQDTRYQGLVAQIELLXQA-ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHTTSCGGGCSHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhcchHHHHHHHHHHHHhhc-ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666555433332222222222233444 5677899999999999999999999999999999999999999999984
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 013659 247 RFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (438)
Q Consensus 247 ~~~~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (438)
. +.......+......-...|..+....
T Consensus 249 ~-p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 249 D-LTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp C-TTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred c-cccccchHHHHHHHHHHHcCCCCcHHH
Confidence 2 222224677777777777887554433
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=98.09 E-value=8.4e-05 Score=60.41 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=64.0
Q ss_pred hcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013659 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (438)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~-~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (438)
+.+.+..+++|+.|+++ .. + ++.+|.-+... -+ ....+|..|+.+....|++..|..||+.++.+. ...
T Consensus 64 YknD~RyLklWl~ya~~---~~-d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P 134 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEY---NS-D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ--AEP 134 (152)
T ss_dssp GTTCHHHHHHHHHHHTT---BS-C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBS
T ss_pred ccCCHHHHHHHHHHHHh---cC-C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--Ccc
Confidence 34455567899999855 22 3 78999999977 34 446799999999999999999999999999853 223
Q ss_pred hHHHHHHHHHHHHHh
Q 013659 253 SEDICHAWLRFEREY 267 (438)
Q Consensus 253 ~~~i~~~~~~fE~~~ 267 (438)
.+.|-..+-+|..+.
T Consensus 135 ~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 135 REFLQQQYRLFQTRL 149 (152)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 457777888887653
No 314
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.07 E-value=7.5e-05 Score=61.57 Aligned_cols=111 Identities=13% Similarity=-0.155 Sum_probs=86.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|..++......|+++.+...|++++..+|.+...|...+..+.. .+..+.+...|+
T Consensus 31 ~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~ 105 (166)
T 1a17_A 31 NAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 466788888888775 677899999999999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHH-HHccCCHHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSL-ERSRASEEEISTVFEK 118 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~l-e~~~~~~~~~~~i~~r 118 (438)
+++...|....+|..+.... ....+..+++..++++
T Consensus 106 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 106 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999888885544321 1112334444444444
No 315
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.07 E-value=0.0014 Score=60.04 Aligned_cols=162 Identities=11% Similarity=-0.028 Sum_probs=95.6
Q ss_pred chhHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhh
Q 013659 73 VGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRI 145 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~-----lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~ 145 (438)
+.+.+..+|++++...+.... .|...+..+....++.+.+...|++|+..... .....+.++. .++.+....
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~ 168 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN-AIANIYAEN 168 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH-HHHHHHHHT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHHHc
Confidence 445566666666665554433 13332333333344566677777777753221 1110111110 111111111
Q ss_pred hcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc------hHHH
Q 013659 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEA 219 (438)
Q Consensus 146 ~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~------~~~~ 219 (438)
.+++.....|++|+..+.......+....++...+.+....+ +++.|...+++++...+. ...+
T Consensus 169 ---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 169 ---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 345555566666666554332222334457777888888889 999999999999987432 2567
Q ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 013659 220 WQSYISMEIELD-HINEARSIYKRCYS 245 (438)
Q Consensus 220 W~~y~~~e~~~g-~~~~ar~i~~ral~ 245 (438)
|..........| +++.|...|++|+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888889 57999999999986
No 316
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.06 E-value=7.5e-06 Score=70.97 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=40.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCC-CeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||..+|+++|+++|+.|| .|.+++++.+ ++|||||
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV 163 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALI 163 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEE
Confidence 3467999999999999999999999999 9999999764 2689997
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.06 E-value=7.8e-05 Score=64.45 Aligned_cols=112 Identities=17% Similarity=0.319 Sum_probs=84.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CC--hhhHHHHHHHHHhcCCCC---------HHHHHHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GD--PGRVQLLYERAITDFPVS---------SDLWLDYTQYLD 68 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~---g~--~~~~~~~yERal~~~p~~---------~~lW~~Y~~~l~ 68 (438)
..|..||..|...... .+-++.|..||.|.... |. -.....++|||+..+..+ ..+|+.|+++.
T Consensus 53 ~~r~~fE~~i~~~~~~-dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~- 130 (223)
T 4aez_C 53 KERMGHERKIETSESL-DDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI- 130 (223)
T ss_dssp HHHHHHHHHHHHGGGS-SCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc-
Confidence 4789999999873211 12478899999998764 32 224678999999976544 47999999863
Q ss_pred hhccchhHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013659 69 KTLKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 69 ~~~~~~~~~~~i~erAl~~--~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~ 123 (438)
. ....+|....++ .-....+|..|+.++|. .+....|..||..++...
T Consensus 131 ---~---~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 ---D---EPVELFSFLAHHHIGQESSIFYEEYANYFES-RGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp ---S---CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred ---C---CHHHHHHHHHHCCcchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 1 245788877774 45678999999999997 688999999999999654
No 318
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00035 Score=59.38 Aligned_cols=102 Identities=11% Similarity=0.260 Sum_probs=77.7
Q ss_pred HHHHHHHHHHh--hhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc-hHHHHHHHHHHHHhcccHHHHH
Q 013659 162 ETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINEAR 237 (438)
Q Consensus 162 ~~f~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~-~~~~W~~y~~~e~~~g~~~~ar 237 (438)
.++++|+..+. ..+.+.+..+++|+.||++. ..++...++.+|.-+... -+. ...+|..|+.+....|++..|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666553 33445666789999999875 232478999999999987 444 4679999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013659 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (438)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (438)
.||+.++.+. ....+.|-..+-+|+.+.
T Consensus 136 ~Vy~~GI~~~--A~P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 136 VLLELGAENN--CRPYNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHTT--CBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CccHHHHHHHHHHHHHHH
Confidence 9999999853 223567778888888764
No 319
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.04 E-value=0.00085 Score=61.57 Aligned_cols=208 Identities=10% Similarity=-0.056 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 013659 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKT-LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (438)
Q Consensus 41 ~~~~~yERal~~~p~~~~lW~~Y~~~l~~~-~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ra 119 (438)
.+..++.+|-+..+.+..+| .|. ... ....+.+...|++|.. +....+..+++...|++|
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KLF---SGSDSYKFEEAADLCVQAAT---------------IYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HHH---SCCSHHHHHHHHHHHHHHHH---------------HHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hhc---CCCCCccHHHHHHHHHHHHH---------------HHHHcCCHHHHHHHHHHH
Confidence 46677888888877766777 553 211 1125668888888833 122357788899999998
Q ss_pred HhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc-C
Q 013659 120 LLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-G 196 (438)
Q Consensus 120 l~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~ 196 (438)
+..... ........+. .++.+.... .++......|++|+.+.... .+.......+...+.+.... |
T Consensus 64 l~~~~~~~~~~~~a~~~~-~lg~~~~~~---------g~~~~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYV-EAYKCFKSG---------GNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp HHHHHHTTCHHHHHHHHH-HHHHHHHHT---------TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHC---------CCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhc
Confidence 864211 1111111111 111111121 45667777888888765432 11222345677788888875 8
Q ss_pred CCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH---H---HHHHHHHHH
Q 013659 197 KDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE---D---ICHAWLRFE 264 (438)
Q Consensus 197 ~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~---~---i~~~~~~fE 264 (438)
+++.|...|++++..+|.. ..+|.....+....|+++.|..+|++++... ++.+. . .+......-
T Consensus 133 -~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 133 -DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--SSCTTTGGGHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--hcCCcccHHHHHHHHHHHHHH
Confidence 9999999999999986543 4578888999999999999999999999842 22221 1 222222233
Q ss_pred HHhCCHHHHHHHHHhhh
Q 013659 265 REYGTLEDFDHSVQKVT 281 (438)
Q Consensus 265 ~~~G~~~~~~~a~~~~~ 281 (438)
...|+.+.-..++.++.
T Consensus 210 ~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHTTCHHHHHHHHHGGG
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34577666555555543
No 320
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00011 Score=59.28 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=89.4
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHH
Q 013659 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~ 96 (438)
+.....|...+......|+++.+..+|++++...|.+ ..+|..++..+.. .++.+.+...|++++...|....+|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4467789999998899999999999999999999987 8889888886654 45678899999999999999999998
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013659 97 RSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 97 ~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
.+...+.. .+..+.+...|++++...+..
T Consensus 104 ~~a~~~~~-~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 104 RRSQALEK-LGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCc
Confidence 88875554 678899999999999766553
No 321
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=7.6e-05 Score=57.32 Aligned_cols=93 Identities=13% Similarity=-0.058 Sum_probs=80.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. +...|..++......|+++.+...|++++...|.++.+|..++..+.. .+..+.+...|+
T Consensus 22 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~ 96 (118)
T 1elw_A 22 DALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRTYE 96 (118)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 456778888888775 677899999988899999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLL 100 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~ 100 (438)
+++...|....+|..+..
T Consensus 97 ~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 97 EGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 999999999998888655
No 322
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.02 E-value=0.00017 Score=59.43 Aligned_cols=106 Identities=8% Similarity=-0.042 Sum_probs=77.9
Q ss_pred HHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccC
Q 013659 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (438)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~ 249 (438)
.+..++...|.....|...+......| +++.|..+|++++..+|++..+|..........|+++.|...|++++.. .
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~ 100 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKG-RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--G 100 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--C
Confidence 344555556667778888888888888 8999999999999999999999999999999999999999999999973 4
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013659 250 GTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 250 ~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
++.+. .|...-..-...|+.+.-..++++
T Consensus 101 P~~~~-~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 101 KNDYT-PVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp SSCCH-HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55553 333333333445665544444443
No 323
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.5e-05 Score=59.27 Aligned_cols=94 Identities=13% Similarity=-0.072 Sum_probs=81.2
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|...+......|+++.+...|+++|...|.++..|...+..+.. .+..+.+...|+
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~ 96 (126)
T 3upv_A 22 NAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHHHHH
Confidence 466788999988876 678999999999999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcC------CCCHHHHHHHHHH
Q 013659 83 RATKNC------PWVGELWVRSLLS 101 (438)
Q Consensus 83 rAl~~~------p~~~~lW~~y~~~ 101 (438)
+++... |....+|......
T Consensus 97 ~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 97 AARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCcccCCchhHHHHHHHHHHH
Confidence 999998 8777777776553
No 324
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.01 E-value=0.015 Score=57.44 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHh
Q 013659 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIEL-----DHINEARSIYKRCYS 245 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~-----g~~~~ar~i~~ral~ 245 (438)
+.+.|...|++++... +...+.....+.... ++++.|...|++++.
T Consensus 274 d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp CHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 6666666666666442 233333333333333 566666666666665
No 325
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.00 E-value=2.9e-05 Score=61.37 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=70.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|...+......|+++.+...|+++|...|.++..|...+..+... +..+.+...|+
T Consensus 35 ~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-g~~~~A~~~~~ 109 (121)
T 1hxi_A 35 EAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-HNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467789999998886 7889999999999999999999999999999999999999998877644 56678999999
Q ss_pred HHHHcCCCCH
Q 013659 83 RATKNCPWVG 92 (438)
Q Consensus 83 rAl~~~p~~~ 92 (438)
+++...|...
T Consensus 110 ~al~~~P~~~ 119 (121)
T 1hxi_A 110 AWLLSQPQYE 119 (121)
T ss_dssp HHHC------
T ss_pred HHHHhCcCCC
Confidence 9999888643
No 326
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.00 E-value=0.003 Score=60.08 Aligned_cols=237 Identities=14% Similarity=-0.025 Sum_probs=135.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC---C---CHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC-------HHHH
Q 013659 29 YLKYEQSSGDPGRVQLLYERAITDFP---V---SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GELW 95 (438)
Q Consensus 29 Y~~~e~~~g~~~~~~~~yERal~~~p---~---~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~-------~~lW 95 (438)
-+.+....|+++.+...|++|+...+ . ...++...+.... ..++.+.+...|++|+..++.. ...+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34445678999999999999997632 2 2234444444333 4456788999999999876432 2244
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhh
Q 013659 96 VRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (438)
Q Consensus 96 ~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~ 173 (438)
..... +....+..+.+...|++|+..... ........+ ..++.+.... .++......|.+|+.+...
T Consensus 186 ~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~lg~~y~~~---------~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 186 FVIAG-NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL-LNIANSYDRS---------GDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHH---------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHC---------CCHHHHHHHHHHHHHHHHh
Confidence 44443 344478899999999999964221 111111111 1111111111 4555666777777766543
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHhccc---HHHHHHHHHHHHh
Q 013659 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA-----MLEAWQSYISMEIELDH---INEARSIYKRCYS 245 (438)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~-----~~~~W~~y~~~e~~~g~---~~~ar~i~~ral~ 245 (438)
. ..+.....+...+.+....| +++.|...|++++...+. ..........+....|+ +..|..++++.-.
T Consensus 255 ~--~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~ 331 (378)
T 3q15_A 255 K--VPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331 (378)
T ss_dssp H--CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC
T ss_pred h--CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC
Confidence 2 23333567777888888889 899999999999998332 22222233333334556 6666666665211
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013659 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
.+....++......-...|+.+.-.....++....
T Consensus 332 ----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 332 ----HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11122344445555555677555444444444433
No 327
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.00 E-value=1.1e-05 Score=71.87 Aligned_cols=44 Identities=30% Similarity=0.408 Sum_probs=39.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCC-CeeEEEEeecCCCCCCcceeeC
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||+.+|+++|+++|+.|| .|.+++++.+ ++|||||
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV 194 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALI 194 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEE
Confidence 457999999999999999999999999 9999998763 3689997
No 328
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=60.32 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 401 LKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 401 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+|+++|+.+|++||.|.+|+|+ ++++|||||
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFV 59 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVV 59 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEE
Confidence 468999999999999999999988 468999997
No 329
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.99 E-value=0.002 Score=59.04 Aligned_cols=176 Identities=12% Similarity=-0.019 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc--HHHH
Q 013659 58 DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEY 130 (438)
Q Consensus 58 ~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~-----lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~--~~~~ 130 (438)
..|..-+..+... ++.+.+...|++++...|.... .|..++..+....++.+.+...|++|+...... ....
T Consensus 76 ~~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3444444433322 3456677777777776554331 333333334444567777788888887532211 0001
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013659 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (438)
Q Consensus 131 ~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (438)
...+. .++.+.... .+++.....|++|+.+.............++...+.+....| +++.|...|++++
T Consensus 155 ~~~~~-~lg~~y~~~---------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIEN-AIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAI 223 (293)
T ss_dssp HHHHH-HHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHH
Confidence 11111 111111111 455566677777776554322111112256777888888888 8999999999999
Q ss_pred Hhccc------hHHHHHHHHHHHHhcccHHHH-HHHHHHHHh
Q 013659 211 KISGA------MLEAWQSYISMEIELDHINEA-RSIYKRCYS 245 (438)
Q Consensus 211 ~~~~~------~~~~W~~y~~~e~~~g~~~~a-r~i~~ral~ 245 (438)
...++ ...++..........|+++.| ...|++|+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 87432 256788888888899999999 888999986
No 330
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=0.00014 Score=57.00 Aligned_cols=101 Identities=12% Similarity=-0.044 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC-------HHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GEL 94 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~-------~~l 94 (438)
....|...+......|+++.+..+|++++...|.+..+|...+..+... ++.+.+...|++++...|.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567888888888999999999999999999999999999999877644 56778999999999987765 778
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 95 WVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
|......+. ..++.+.+...|++++...+
T Consensus 82 ~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 82 YARIGNSYF-KEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHhCC
Confidence 888776554 47889999999999997654
No 331
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.98 E-value=0.00014 Score=56.97 Aligned_cols=97 Identities=14% Similarity=-0.033 Sum_probs=82.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.+...|+.++...|. +...|..++......|+++.+..+|++++...|.++.+|...+..+.. .++.+.+...|+
T Consensus 30 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 104 (131)
T 2vyi_A 30 AAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYYK 104 (131)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 356678888887775 677899999988999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~ 104 (438)
+++...|....+|..+...+..
T Consensus 105 ~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 105 KALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHH
Confidence 9999999998888887765443
No 332
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.98 E-value=8.6e-05 Score=58.56 Aligned_cols=96 Identities=17% Similarity=-0.017 Sum_probs=81.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|..++......|+++.+..+|++++...|.+..+|..++..+.. .++.+.+...|+
T Consensus 34 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 108 (133)
T 2lni_A 34 QAMKHYTEAIKRNPK----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 456778888887775 677899999988899999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le 103 (438)
+++...|....+|..+...+.
T Consensus 109 ~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 109 KALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHH
Confidence 999999988888887766443
No 333
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.97 E-value=3.8e-05 Score=63.36 Aligned_cols=88 Identities=9% Similarity=-0.083 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--
Q 013659 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR-- 106 (438)
Q Consensus 38 ~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~---------~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~-- 106 (438)
.++.++..|++++..+|.+.+.|..+...+..... ..+.++..|++||+..|.....|......+....
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 45677778888888888888888888776554321 1346888888888888888877777665544322
Q ss_pred --------CCHHHHHHHHHHHHhCCcc
Q 013659 107 --------ASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 107 --------~~~~~~~~i~~ral~~~~~ 125 (438)
+.++++...|++|+...+.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 3577888888888877665
No 334
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.97 E-value=0.00071 Score=64.49 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=135.9
Q ss_pred hhhHhHHHHHhcCCCC--ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhhccc
Q 013659 3 NARAHLEEQISRQDLS--DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKV 73 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~--~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~-------~~lW~~Y~~~l~~~~~~ 73 (438)
+|...|+.++...+.. ++.....+...+......|+++.+...|++|+...+.. ...+...+.... ..+.
T Consensus 119 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~ 197 (378)
T 3q15_A 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKH 197 (378)
T ss_dssp HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCC
Confidence 4566778887553321 23345577777777788999999999999999865432 223444444333 3467
Q ss_pred hhHHHHHHHHHHHcCCC---C---HHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCcccHHHHHHHHHHHHHHHH
Q 013659 74 GNVVRDVYSRATKNCPW---V---GELWVRSLLSLERSRASEEEISTVFEKSLL-----CAFSTFEEYLDLFLTRIDGLR 142 (438)
Q Consensus 74 ~~~~~~i~erAl~~~p~---~---~~lW~~y~~~le~~~~~~~~~~~i~~ral~-----~~~~~~~~~~~~~~~~~~~l~ 142 (438)
.+.+...|++|+..++. . ..++..... +....+..+.+...|++|+. ..+.....+..+-..+
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~----- 271 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIAN-SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL----- 271 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH-----
Confidence 78899999999986532 1 234444443 33446889999999999997 3332221121111111
Q ss_pred HhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhccchHHH
Q 013659 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLEA 219 (438)
Q Consensus 143 rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~e~~l~~~~~~~~~ 219 (438)
.+. .++......|++|+......- .+.....+.....+....+ + +..|..++++. ...+....+
T Consensus 272 ~~~---------g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~~-~~~~~~~~~ 338 (378)
T 3q15_A 272 CKA---------GQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQAVYKETV-DERKIHDLLSYFEKK-NLHAYIEAC 338 (378)
T ss_dssp HHT---------TCHHHHHHHHHHHHHHCCTTC--CSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHC---------CCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhC-CChhHHHHH
Confidence 111 456666677777777643321 1222222333343444444 5 55555555541 123444567
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 220 WQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+...+.+....|+++.|...|++++.
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888899999999999999986
No 335
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.95 E-value=0.0001 Score=69.47 Aligned_cols=117 Identities=6% Similarity=-0.048 Sum_probs=91.0
Q ss_pred hhhHhHHHHHhcCCCCC-----------hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Q 013659 3 NARAHLEEQISRQDLSD-----------SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL 71 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~-----------~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~ 71 (438)
+|...|+.+|...|... +.....|..++......|+++.++..|++||..+|.++..|...+..+.. .
T Consensus 165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~ 243 (336)
T 1p5q_A 165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-V 243 (336)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-C
Confidence 46778889998877520 01157899999999999999999999999999999999999999987764 4
Q ss_pred cchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013659 72 KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 72 ~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
+..+.+...|++|+...|....+|..+...+.......+....+|.+++
T Consensus 244 g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 244 NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999998877755543322233355666655
No 336
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.94 E-value=3.1e-05 Score=70.50 Aligned_cols=195 Identities=8% Similarity=-0.048 Sum_probs=131.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHH-------HHHHHhcCChhhHHHHHHHHHhcCCC-----------C--------
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIY-------LKYEQSSGDPGRVQLLYERAITDFPV-----------S-------- 56 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y-------~~~e~~~g~~~~~~~~yERal~~~p~-----------~-------- 56 (438)
.++..|..++..+|. ..+.|... .......+....+.-.+.|++...|. .
T Consensus 24 ~A~~~F~~a~~~dP~----~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 24 RSLDLFTEITNYDES----ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHhChh----hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 478899999999886 89999999 45555544556666788888884442 1
Q ss_pred --HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHH
Q 013659 57 --SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF 134 (438)
Q Consensus 57 --~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~ 134 (438)
.++++.|+..+... +..+.+..+|+..+...|.....|..-+ +....+..+++...|+.++..+.+....-+.++
T Consensus 100 ~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~p~~~~~~~~a~--l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQ-GNYADAMEALEAAPVAGSEHLVAWMKAV--VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp SHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTTCHHHHHHHHHH--HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 57888899988754 4678899999998887775443333322 333468899999999988776533211112222
Q ss_pred HHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC-C-ch-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013659 135 LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-T-DG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 135 ~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~-~-~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
+. ....++ +.|++|+.++.+.... . +. ....+...+.....+| +.+.|+.+|++++.
T Consensus 177 LG---~al~~L----------------G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG-r~deA~~~l~~a~a 236 (282)
T 4f3v_A 177 HG---VAAANL----------------ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG-NESAAVALLEWLQT 236 (282)
T ss_dssp HH---HHHHHT----------------TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HH---HHHHHC----------------CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 21 111111 3345555555555422 2 32 4467888888889999 89999999999999
Q ss_pred hccchHHHHHHHHH
Q 013659 212 ISGAMLEAWQSYIS 225 (438)
Q Consensus 212 ~~~~~~~~W~~y~~ 225 (438)
.+|+ ..+|....+
T Consensus 237 ~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 237 THPE-PKVAAALKD 249 (282)
T ss_dssp HSCC-HHHHHHHHC
T ss_pred cCCc-HHHHHHHhC
Confidence 9999 777765543
No 337
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=1.8e-05 Score=61.71 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=36.5
Q ss_pred CCCceEEEeCCCCCCC-----------HHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 389 TDECTAFLSNINLKAT-----------YEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV 69 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASV 69 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEE
Confidence 3456999999954433 5799999999999999955 553 38999997
No 338
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=0.00014 Score=58.56 Aligned_cols=96 Identities=10% Similarity=-0.113 Sum_probs=80.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. ++.....|..++......|+++.+...|++++...|.+..+|..++..+... ++.+.+...|+
T Consensus 46 ~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~ 123 (148)
T 2dba_A 46 GALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL-GRLDQAVLDLQ 123 (148)
T ss_dssp HHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 456778888887774 1112678999999889999999999999999999999999999998877644 56788999999
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLL 100 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~ 100 (438)
+++...|....+|..+..
T Consensus 124 ~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 124 RCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHCSSCHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHH
Confidence 999999999999987665
No 339
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.90 E-value=0.02 Score=56.39 Aligned_cols=110 Identities=10% Similarity=-0.091 Sum_probs=54.9
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchhH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~----~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~ 76 (438)
+...|+.++... +...+.....+... .++++.+...|++++.. .++..+.......... .++.+.
T Consensus 98 A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 98 AVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 455566665442 22334444444444 45666666666666654 3455555555444321 234455
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhCC
Q 013659 77 VRDVYSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 77 ~~~i~erAl~~~p~~~~lW~~y~~~le~---~~~~~~~~~~i~~ral~~~ 123 (438)
+...|++|+.. .....|......+.. ...+.+.+...|++++..+
T Consensus 170 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 170 AREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666653 233444444433322 0345566666666666543
No 340
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.90 E-value=1.1e-06 Score=67.72 Aligned_cols=42 Identities=5% Similarity=0.191 Sum_probs=36.1
Q ss_pred EeCCCCCCCHHHHHHHh------------cCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 396 LSNINLKATYEDLRRFF------------SDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 396 v~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
++|||+.+++++|++.| ++||.|.+|.|+.++ +|+++|||||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV 73 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYV 73 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEE
Confidence 56788888888887777 999999999999984 6899999997
No 341
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.90 E-value=0.00016 Score=57.54 Aligned_cols=101 Identities=11% Similarity=-0.071 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH-------HH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG-------EL 94 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~-------~l 94 (438)
....|...+....+.|+++.++..|++||..+|.++.+|......+.. .+..+.+...|++||...|... .+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 445788888888899999999999999999999999999998876664 4577889999999999766432 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 95 WVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
|...... ....+..+.+...|++++...+
T Consensus 86 ~~~lg~~-~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 86 MSRAGNA-FQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHhhCc
Confidence 4444343 3346788999999999997544
No 342
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.88 E-value=0.0058 Score=55.26 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=112.0
Q ss_pred HHHHHHHHhcCCCCH-------HHHHHHHH-HHHhhc------------cchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013659 43 QLLYERAITDFPVSS-------DLWLDYTQ-YLDKTL------------KVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 43 ~~~yERal~~~p~~~-------~lW~~Y~~-~l~~~~------------~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
..+||-.+..+|.+. .++..|+. |++... .+..+++.+|.||.... ++.|
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~----------~raL 121 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA----------LSSL 121 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH----------HHHH
Confidence 568899999999987 46777876 443210 12345677777776632 1223
Q ss_pred HHccCCHH-HHH----HHHHHHHh-CCcccHHHHHHHHHHHHHHHHHhhhc-ccccchhhcHHHHHHHHHHHHHHHhhhh
Q 013659 103 ERSRASEE-EIS----TVFEKSLL-CAFSTFEEYLDLFLTRIDGLRRRILF-SGEVEGVLDYSLIRETFQRASDYLSEQM 175 (438)
Q Consensus 103 e~~~~~~~-~~~----~i~~ral~-~~~~~~~~~~~~~~~~~~~l~rr~~~-~~~~~~~~~~~~~r~~f~~a~~~l~~~~ 175 (438)
+.....+. .++ .-+..++. +.+..+... +|..-.-. ..+.. .........+..++..+++|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L--~W~ai~~s--s~a~~~~gg~~Al~~l~~A~a~lerAleL----- 192 (301)
T 3u64_A 122 ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTL--YWVGTGYV--AAFALTPLGSALPDTVHAAVMMLERACDL----- 192 (301)
T ss_dssp HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHH--HHHHHHHH--HHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----
T ss_pred HHhCccHHHHHHhcchhhHHHHHHHcCccccHHH--HHHHHHHH--HHHhcCCCChHHHHhHHHHHHHHHHHHHh-----
Confidence 32222221 111 12344443 233332221 22211100 01111 12223334566677778888775
Q ss_pred cCCchhH--HHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHhc-ccHHHHHHHHHHHHhc
Q 013659 176 KNTDGLL--RLYAYWAHLEQSM----GKDMVSARGVWERLLKISGAM-LEAWQSYISMEIEL-DHINEARSIYKRCYSK 246 (438)
Q Consensus 176 ~~~~~~~--~l~~~~a~~e~~~----~~~~~~ar~i~e~~l~~~~~~-~~~W~~y~~~e~~~-g~~~~ar~i~~ral~~ 246 (438)
.+... ..|..++-++... +|+.++|+..|++++..+|+. ...+..|++|.... |+.+.++..+++++..
T Consensus 193 --DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 193 --WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred --CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 23322 3788888888775 559999999999999999975 99999999999875 9999999999999983
No 343
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.87 E-value=0.00028 Score=54.60 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=79.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|+
T Consensus 27 ~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (125)
T 1na0_A 27 EAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 456778888887775 567899999988999999999999999999999999999999887764 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHH
Q 013659 83 RATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~ 101 (438)
+++...|....++..+...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 102 KALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHH
Confidence 9999999988888776553
No 344
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.87 E-value=0.0094 Score=56.23 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=138.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCHHH-----HHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHH------HHH
Q 013659 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDL-----WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL------WVR 97 (438)
Q Consensus 29 Y~~~e~~~g~~~~~~~~yERal~~~p~~~~l-----W~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~l------W~~ 97 (438)
........|+++.+..++++++...|.+... +........ ..++.+.+...|++|+...|..+.. +..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344456899999999999999988765432 222222222 2356778999999999876543322 122
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCcc------cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHH
Q 013659 98 SLLSLERSRASEEEISTVFEKSLLCAFS------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYL 171 (438)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~ral~~~~~------~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l 171 (438)
.. .+....+..+.+...|++++..... .........+.. +.... .++......+.+++...
T Consensus 99 la-~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~---~~~~~---------g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 99 QS-EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ---LLWAW---------ARLDEAEASARSGIEVL 165 (373)
T ss_dssp HH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH---HHHHT---------TCHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH---HHHHh---------cCHHHHHHHHHHHHHHh
Confidence 22 2344578899999999999853211 001111111111 11111 45666677777777654
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--chHHHHHHH-----HHHHHhcccHHHHHHHHHHHH
Q 013659 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG--AMLEAWQSY-----ISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~--~~~~~W~~y-----~~~e~~~g~~~~ar~i~~ral 244 (438)
... . .+.....+...+.+....| +++.|...+++++...+ .....|... +.+....|+++.|+.++.+++
T Consensus 166 ~~~-~-~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 166 SSY-Q-PQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp TTS-C-GGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcc-C-cHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 321 1 1113346667788888888 89999999999997632 211234332 233557899999999999998
Q ss_pred hcccCCC-C-hHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 245 SKRFTGT-G-SEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 245 ~~~~~~~-~-~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
... +.+ . ....+..........|+.+.....+.++
T Consensus 243 ~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 243 KPE-FANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CCC-CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 632 111 1 1223344455555667766555444444
No 345
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.87 E-value=0.00036 Score=57.50 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=64.0
Q ss_pred hcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013659 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (438)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~-~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (438)
+.+.+..+.+|+.|+++- + .++.+|..+... -+ ....+|..|+.+....|++..|..||..++.+. ...
T Consensus 59 YknD~RyLklWl~ya~~~---~----~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~--A~P 129 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---N----EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK--AEP 129 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---S----CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBS
T ss_pred hccCHHHHHHHHHHHHhc---C----CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc
Confidence 344556678999998662 3 377899999877 34 446799999999999999999999999999853 223
Q ss_pred hHHHHHHHHHHHHHh
Q 013659 253 SEDICHAWLRFEREY 267 (438)
Q Consensus 253 ~~~i~~~~~~fE~~~ 267 (438)
.+.|-..+-.|+.+.
T Consensus 130 ~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 130 LERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777888886554
No 346
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.85 E-value=0.00042 Score=59.84 Aligned_cols=147 Identities=7% Similarity=-0.065 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.+...+......|+++.+...|++++ +.++.+|...+..... .++.+.+...|++|+...|.....|......+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~- 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY- 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-
Confidence 34455666667899999999999997 3378899988887664 456788999999999999999999998887554
Q ss_pred ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHH
Q 013659 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (438)
..+..+++...|++++...+.... .. +........+....+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~--------------------------~~-------------~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQL--------------------------ID-------------YKILGLQFKLFACEV 123 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSE--------------------------EE-------------CGGGTBCCEEEHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccH--------------------------HH-------------HHHhccccCccchHH
Confidence 477888999999998875433100 00 000000112233456
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 013659 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (438)
|...+.+....| +++.|...|++++...|+.
T Consensus 124 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 124 LYNIAFMYAKKE-EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHcCccc
Confidence 677777777777 8888999999988887764
No 347
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=6.4e-05 Score=58.69 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=45.5
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+...|+.+|...+ .++.+...|...+......|+++.+...|++++..+|.++.+|..++..+... +..+.+...|++
T Consensus 9 A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 86 (117)
T 3k9i_A 9 AVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRYEQGVELLLK 86 (117)
T ss_dssp CHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 4445555554421 02234455555555555555555555555555555555555555555544432 334445555555
Q ss_pred HHHcCCCCHH
Q 013659 84 ATKNCPWVGE 93 (438)
Q Consensus 84 Al~~~p~~~~ 93 (438)
++...|....
T Consensus 87 al~~~p~~~~ 96 (117)
T 3k9i_A 87 IIAETSDDET 96 (117)
T ss_dssp HHHHHCCCHH
T ss_pred HHHhCCCcHH
Confidence 5555555443
No 348
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.84 E-value=0.00047 Score=63.07 Aligned_cols=171 Identities=13% Similarity=0.000 Sum_probs=115.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|..++......|+++.+...|++++...|.+...|...+..+.. .+..+.+...|+
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~ 96 (281)
T 2c2l_A 22 EAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ 96 (281)
T ss_dssp HHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 467788999988886 778899999999999999999999999999999999999999887764 457788999999
Q ss_pred HHHHcCCCC-----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 013659 83 RATKNCPWV-----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (438)
Q Consensus 83 rAl~~~p~~-----~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (438)
+|+...|.. ..+|..+.. ... ...........+. .+..++..+
T Consensus 97 ~al~l~p~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~i~~~l~~l--------------------- 146 (281)
T 2c2l_A 97 RAYSLAKEQRLNFGDDIPSALRI-AKK--------KRWNSIEERRIHQESELHSYLTRL--------------------- 146 (281)
T ss_dssp HHHHHHHHTTCCCCSHHHHHHHH-HHH--------HHHHHHHHTCCCCCCHHHHHHHHH---------------------
T ss_pred HHHHhCccchhhHHHHHHHHHHH-HHH--------HHHHHHHHHHHhhhHHHHHHHHHH---------------------
Confidence 999977643 356665422 111 1111111111111 111111111
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
+..-+++|+..+..++...+....+......+.....+.++.|..+|.++...
T Consensus 147 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 ----IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ----HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ----HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 12445667777766665555555555555666655543688899999988864
No 349
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.83 E-value=0.0003 Score=60.77 Aligned_cols=102 Identities=4% Similarity=-0.127 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH---------
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--------- 92 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~--------- 92 (438)
+...|...+......|+++.+...|++++..+|.+...|...+..+.. .+..+.+...|++++...|...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 456899999988999999999999999999999999999999987764 4567889999999999888755
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 93 -------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 93 -------~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
.+|......+. ..++.+.+...|++++...+.
T Consensus 115 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCcc
Confidence 78888777554 478899999999999987664
No 350
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=0.00022 Score=55.19 Aligned_cols=82 Identities=11% Similarity=-0.006 Sum_probs=42.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.+...|+.+|...|. +...|..++......|+++.+...|++++...|.+...|..++..+... ++.+.+...|+
T Consensus 3 ~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 344555555555443 3445555555555555555555555555555555555555555444322 33444555555
Q ss_pred HHHHcCC
Q 013659 83 RATKNCP 89 (438)
Q Consensus 83 rAl~~~p 89 (438)
+++...|
T Consensus 78 ~al~~~~ 84 (115)
T 2kat_A 78 SGLAAAQ 84 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 5555443
No 351
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.82 E-value=0.00023 Score=59.06 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHH
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ 235 (438)
++......|.+++.. .+....+|...+.+....+ +++.|...|++++..+|++...|..........|+++.
T Consensus 26 ~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 97 (164)
T 3sz7_A 26 EYSKAIDLYTQALSI-------APANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKG 97 (164)
T ss_dssp CHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHh-------CCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Confidence 444444555555543 4555678888898888888 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 013659 236 ARSIYKRCYSK 246 (438)
Q Consensus 236 ar~i~~ral~~ 246 (438)
|...|++++..
T Consensus 98 A~~~~~~al~~ 108 (164)
T 3sz7_A 98 AKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999984
No 352
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=1.8e-05 Score=61.88 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHhcCCCCeeEEEEeecCCC
Q 013659 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFT 429 (438)
Q Consensus 389 ~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~ 429 (438)
..++.|||+||+.. ++.++|+++|+.||+|..|.++.++.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~t 57 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE 57 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCE
Confidence 45789999999999 999999999999999999999988543
No 353
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.80 E-value=0.0052 Score=56.67 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=107.6
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCCH
Q 013659 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------GELWVRSLLSLERSRASE 109 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~------~~lW~~y~~~le~~~~~~ 109 (438)
.|+++.+..+|+++.. +....+..+.+...|.+|+...+.. ...|..... +....++.
T Consensus 29 ~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAV---------------AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM-MLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCG
T ss_pred CCCHHHHHHHHHHHHH---------------HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCCH
Confidence 3567777777777632 1112345566777777777754321 234444443 33335677
Q ss_pred HHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHH
Q 013659 110 EEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187 (438)
Q Consensus 110 ~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~ 187 (438)
+++...|++|+..... ........+.. +..+. .. .++......|++|+.+.... ........++..
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~-lg~~~---------~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~ 160 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDR-AGKLM---------EP-LDLSKAVHLYQQAAAVFENE-ERLRQAAELIGK 160 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHH---------TT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHH---------Hc-CCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 7788888888753211 11111111111 11110 11 34556667777777765431 111122457777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013659 188 WAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
.+.+....| +++.|...|++++...+.. ...|+..+......|+++.|...|++++
T Consensus 161 lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQ-KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888899 8999999999999875432 2356666666777799999999999999
No 354
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.79 E-value=0.0012 Score=60.96 Aligned_cols=208 Identities=9% Similarity=-0.002 Sum_probs=123.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 013659 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i 115 (438)
.|++..+..++++|....+.+ ++ ...++.+.+...|.++.. +....+..+.+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~-~~~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FM-KWKPDYDSAASEYAKAAV---------------AFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SS-SCSCCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------cc-CCCCCHHHHHHHHHHHHH---------------HHHHcCCHHHHHHH
Confidence 355677888888888766542 11 112455667778887732 22235778888888
Q ss_pred HHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 013659 116 FEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (438)
Q Consensus 116 ~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (438)
|.+++..... ........+.. +..+.... .++......|++|+.+.... .+.......+...+.+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~-lg~~~~~~---------g~~~~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQ-AGMMLKDL---------QRMPEAVQYIEKASVMYVEN-GTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHT---------TCGGGGHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HHHHHHhC---------CCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 9888864321 11111111111 11111111 23445557778887765331 111223456777777776
Q ss_pred HcCCCHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH-
Q 013659 194 SMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE- 266 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~------~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~- 266 (438)
. + +++.|...|++++...+.. ..++.....+....|+++.|..+|++++...............|+..-..
T Consensus 128 ~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 128 P-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp T-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 6 6 9999999999999885432 46888888899999999999999999997421112222333344433333
Q ss_pred --hCCHHHHHHHHHhhh
Q 013659 267 --YGTLEDFDHSVQKVT 281 (438)
Q Consensus 267 --~G~~~~~~~a~~~~~ 281 (438)
.|+.+....+++++.
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 377666555555543
No 355
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.79 E-value=0.00085 Score=57.45 Aligned_cols=103 Identities=12% Similarity=-0.129 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----------------DLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~----------------~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
....|...+......|+++.+..+|++++...|.++ .+|...+..+.. .+..+.+...|++|+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 455788888888889999999999999999999887 888888876664 456788999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013659 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
...|.....|......+.. .+..+.+...|++++...+..
T Consensus 116 ~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMY-FGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCcccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCc
Confidence 9999999999988875554 688999999999999876654
No 356
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=0.00019 Score=70.69 Aligned_cols=104 Identities=13% Similarity=-0.053 Sum_probs=88.1
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013659 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---------------~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
.....|...+......|++..|...|++||..+|.+ ..+|.+++..+.. .+..+.+...|++|+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 456689999999999999999999999999999988 6888888876664 457788999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013659 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
...|.....|......+.. .++.+.+...|++|+...+..
T Consensus 345 ~~~p~~~~a~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC---
T ss_pred hcCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999998875554 788999999999999887653
No 357
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.76 E-value=0.0002 Score=57.02 Aligned_cols=93 Identities=14% Similarity=-0.056 Sum_probs=78.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.+|...|. +...|..++......|+++.+...|++++...|.++..|...+..+.. .++.+.+...|+
T Consensus 27 ~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~ 101 (137)
T 3q49_B 27 EAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ 101 (137)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 456778888888775 678999999999999999999999999999999999999999987764 456788999999
Q ss_pred HHHHcCCC-----CHHHHHHHHH
Q 013659 83 RATKNCPW-----VGELWVRSLL 100 (438)
Q Consensus 83 rAl~~~p~-----~~~lW~~y~~ 100 (438)
+++...|. ...+|.....
T Consensus 102 ~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 102 RAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHHHChhHHHHHHHHHHHHHHH
Confidence 99998776 5667766554
No 358
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00083 Score=55.43 Aligned_cols=104 Identities=11% Similarity=-0.100 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITD------------------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~------------------~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
....|..-+......|+++.++..|++||.. .|.+..+|...+..+.. .+..+.+...|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 4567888888888999999999999999998 66777899888876654 4567889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccH
Q 013659 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~ 127 (438)
||...|.....|......+.. .+..+.+...|++++...+...
T Consensus 89 al~~~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCCcchHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999998875554 7889999999999998877644
No 359
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00097 Score=67.46 Aligned_cols=179 Identities=9% Similarity=-0.002 Sum_probs=122.3
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK- 72 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~----------~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~- 72 (438)
|-..|+.+|..+|. ++.+|..=.......|. ++.+...|+++|..+|.++.+|..-.-.+. ..+
T Consensus 48 al~~~~~~l~~nP~----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~ 122 (567)
T 1dce_A 48 VLELTSQILGANPD----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPE 122 (567)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSS
T ss_pred HHHHHHHHHHHCch----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hccc
Confidence 45678888888886 89999877766666666 788999999999999999999999887665 445
Q ss_pred -chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHH--HHHHHHHHHHHHHHhhhccc
Q 013659 73 -VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSG 149 (438)
Q Consensus 73 -~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~ 149 (438)
..+.+...+++++..-|.....|......+...+...+++.+.+.+++...+..... +....+. ++....
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~-------~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-------QLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH-------HHSCCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH-------hhcccc
Confidence 337789999999999999999999887766664447788888889999887774433 2222211 111000
Q ss_pred ccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcC
Q 013659 150 EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (438)
Q Consensus 150 ~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (438)
.......+ ....++++++++..++...|.....|.+..-+....+
T Consensus 196 ~~~~~~~~--~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRL--PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSS--CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccc--cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 00000000 0134556666665555445555678988776665544
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.74 E-value=2.4e-05 Score=60.15 Aligned_cols=48 Identities=25% Similarity=0.117 Sum_probs=38.5
Q ss_pred CceEEEeCC--CCCCC--------HHHHHHHhcCCCCeeEEEEeecCCC--CCCcceeeC
Q 013659 391 ECTAFLSNI--NLKAT--------YEDLRRFFSDVGGVSSIRILHDKFT--GKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~~fv 438 (438)
.+.|.+.|+ |.... +++|++.|++||.|.+|.|+.++.+ ++++|||||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV 64 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFV 64 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEE
Confidence 458899997 33333 3689999999999999999998654 478999997
No 361
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.72 E-value=0.0004 Score=60.02 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=68.5
Q ss_pred HHHHHHHHHHh--hhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHhcccHHHHH
Q 013659 162 ETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEAR 237 (438)
Q Consensus 162 ~~f~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~-~~~~~W~~y~~~e~~~g~~~~ar 237 (438)
.++++|+..+. ..+.+.+..+.+|+.|+++ . +.++.+|..+... -+ ....+|..|+.+....|++..|.
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~----~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNY----I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT----C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHc----c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 45566665543 3344556678999999964 2 3677899999987 44 44679999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHH
Q 013659 238 SIYKRCYSKRFTGTGSEDICHAWLRFE 264 (438)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE 264 (438)
.||+.++.+.- ...+.|-..+-.|+
T Consensus 171 ~Vy~~Gi~~~A--~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 171 EVYQKGKRMKA--KPFLRFQQKYQQFT 195 (223)
T ss_dssp HHHHHHHHHTC--BSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--ccHHHHHHHHHHHH
Confidence 99999998532 22345556666664
No 362
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.69 E-value=0.00026 Score=58.28 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=72.0
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc-
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL- 71 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~----------~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~- 71 (438)
+++..|+.+|..+|. +.+.|..+.......+. ++.++..|++||..+|.+.+.|......+...+
T Consensus 20 eA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 20 QIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 467888888888886 78889988887777665 459999999999999999999999998776543
Q ss_pred ---------cchhHHHHHHHHHHHcCCCCH
Q 013659 72 ---------KVGNVVRDVYSRATKNCPWVG 92 (438)
Q Consensus 72 ---------~~~~~~~~i~erAl~~~p~~~ 92 (438)
+..+.+...|++||...|...
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 356789999999999999764
No 363
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=9.7e-05 Score=69.70 Aligned_cols=117 Identities=11% Similarity=-0.020 Sum_probs=67.1
Q ss_pred hhhHhHHHHHhcCCCCChHhH-----------------HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKF-----------------QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~-----------------~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~ 65 (438)
+|...|+.+|...|. +. ..|..++......|+++.++..|+++|..+|.+...|...+.
T Consensus 197 ~A~~~y~~Al~~~p~----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 197 EAMQQYEMAIAYMGD----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp HHHHHHHHHHHHSCH----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 466778888877663 22 378888888889999999999999999999999999999998
Q ss_pred HHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 66 YLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 66 ~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
.+.. .+..+.+...|++|+...|....+|..+...........+..+.+|.+++...+
T Consensus 273 a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 273 AKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHT-TTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 7764 457788999999999999988888887665434445556677888888876544
No 364
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00017 Score=68.09 Aligned_cols=36 Identities=11% Similarity=-0.116 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS 57 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~ 57 (438)
....|...+......|+++.|...|++||...|.+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 213 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF 213 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Confidence 445677777777788999999999999999988765
No 365
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=0.00045 Score=57.00 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHhhccchhHHHHHHHHHHHc--
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV-------SSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKN-- 87 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~-------~~~-----lW~~Y~~~l~~~~~~~~~~~~i~erAl~~-- 87 (438)
....|..-+......|+++.+...|++||..+|. +.. +|.+-...+. ..+..+.+...|++||..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhh
Confidence 3456888888888899999999999999999998 544 8998887666 445678899999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013659 88 -----CPWVGELW----VRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 88 -----~p~~~~lW----~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
.|.....| ......+.. .+..+++...|++|+...+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCC
Confidence 99999999 887776654 7889999999999997543
No 366
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.67 E-value=0.00014 Score=56.65 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHhhhhcC---CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013659 166 RASDYLSEQMKN---TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (438)
Q Consensus 166 ~a~~~l~~~~~~---~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~r 242 (438)
+|+.++.+++.. .+....+|...+.+....| +++.|...|++++..+|++..+|..+.......|+++.|...|++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443 3556678888999999999 899999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 013659 243 CYSK 246 (438)
Q Consensus 243 al~~ 246 (438)
++..
T Consensus 87 al~~ 90 (117)
T 3k9i_A 87 IIAE 90 (117)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9984
No 367
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.67 E-value=0.00095 Score=52.32 Aligned_cols=98 Identities=7% Similarity=-0.047 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC---HHHHHHHH
Q 013659 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSL 99 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~---~~lW~~y~ 99 (438)
+...+......|+++.+...|++++...|.++ ..|...+..... .++.+.+...|++++...|.+ ...|....
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34445555678999999999999999999888 788888776654 456788999999999999988 77777777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
..+. ..++.+.+...|++++...+.
T Consensus 84 ~~~~-~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 84 LSQY-GEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHH-HcCCHHHHHHHHHHHHHHCCC
Confidence 6554 478889999999999976554
No 368
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.65 E-value=0.00034 Score=52.98 Aligned_cols=83 Identities=10% Similarity=0.098 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhc-cc
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIEL-DH 232 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~~W~~y~~~e~~~-g~ 232 (438)
++......|++++.. .+....+|...+.+....+ +++.|...|++++...|+ ...+|.......... |+
T Consensus 21 ~~~~A~~~~~~a~~~-------~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 21 NYTESIDLFEKAIQL-------DPEESKYWLMKGKALYNLE-RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp CHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC
T ss_pred hHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC
Confidence 344444555555443 3344557788888888888 899999999999999888 888999999998899 99
Q ss_pred HHHHHHHHHHHHhc
Q 013659 233 INEARSIYKRCYSK 246 (438)
Q Consensus 233 ~~~ar~i~~ral~~ 246 (438)
++.|...|.+++..
T Consensus 93 ~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 93 EVEAEIAEARAKLE 106 (112)
T ss_dssp SHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999873
No 369
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00089 Score=48.77 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
....|...+......|+++.+...|++++...|.+..+|..+...+.. .++.+.+...|++++...|.....|..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 566788888888889999999999999999999999999999887764 4567889999999999999998888876654
Q ss_pred H
Q 013659 102 L 102 (438)
Q Consensus 102 l 102 (438)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 4
No 370
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00045 Score=53.41 Aligned_cols=72 Identities=10% Similarity=-0.009 Sum_probs=63.0
Q ss_pred hhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
..+...+....+|...+.+....| +++.|...|++++...|+....|..+.......|+++.|+..|++++.
T Consensus 10 ~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 10 AMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333334555668888899888888 899999999999999999999999999999999999999999999997
No 371
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.62 E-value=0.00032 Score=60.18 Aligned_cols=100 Identities=6% Similarity=-0.100 Sum_probs=80.2
Q ss_pred hhhHhHHHHHhcCCCCC-hH-----------hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 013659 3 NARAHLEEQISRQDLSD-SE-----------KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~-~~-----------~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~ 70 (438)
+|...|+.+|...|... .. ....|..++......|+++.+...|++++...|.+...|...+..+..
T Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 134 (198)
T 2fbn_A 56 EAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY- 134 (198)
T ss_dssp HHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence 45667888887665310 00 026788888888899999999999999999999999999999987764
Q ss_pred ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013659 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
.++.+.+...|++|+...|....+|..+...+.
T Consensus 135 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 135 FGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 456788999999999999999988888766444
No 372
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.60 E-value=0.00091 Score=52.44 Aligned_cols=63 Identities=6% Similarity=-0.028 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
..+...+.+....| +++.|...|++++..+|++ ...|..........|+++.|...|++++..
T Consensus 40 ~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57777888888888 8999999999999999888 778888888888999999999999999983
No 373
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.60 E-value=0.039 Score=53.86 Aligned_cols=194 Identities=9% Similarity=-0.024 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013659 25 QYMIYLKYEQSSG---DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 25 ~w~~Y~~~e~~~g---~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
.+.....+....| ++..+...|++++...|.....|.....++..- .++.+.+...|++|. |.....+..+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 4555555555567 677788888888888877777666666555321 135566788888887 6666666666
Q ss_pred HHHHH--HccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhc
Q 013659 99 LLSLE--RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (438)
Q Consensus 99 ~~~le--~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~ 176 (438)
...+. ...++.+++...|++|...+.......+. ..+. . ... .. .+ +.+|+.++.++.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg--~~y~-----~--G~g-~~--~d-------~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLG--KLYY-----E--GKW-VP--AD-------AKAAEAHFEKAV- 314 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHH--HHHH-----H--CSS-SC--CC-------HHHHHHHHHTTT-
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH--HHHH-----c--CCC-CC--CC-------HHHHHHHHHHHh-
Confidence 55423 33567777888888887665432211111 1110 0 000 00 12 344555555444
Q ss_pred CCchhHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----cccHHHHHHHHHHHHh
Q 013659 177 NTDGLLRLYAYWAHLEQS---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYS 245 (438)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~---~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~----~g~~~~ar~i~~ral~ 245 (438)
.. ....+...+.+... ...|+++|...|+++.........+ ....+... ..++..|...|.+|..
T Consensus 315 ~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~--~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 315 GR--EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF--AIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TT--CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH--HHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH--HHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 22 22344444544433 1227788888888888652211222 22222221 2377888888888876
No 374
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.60 E-value=0.02 Score=52.70 Aligned_cols=187 Identities=13% Similarity=-0.021 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 013659 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP--WVGELWVRSLLSLERSRASEEEISTVFEKS 119 (438)
Q Consensus 42 ~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p--~~~~lW~~y~~~le~~~~~~~~~~~i~~ra 119 (438)
+...|++.+...+.+.....-.+. +....++.+.+..++.++|..-| ...++....+..+.. .+..+.++.+++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~-i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLAT-AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 566777777765555555553333 33344677889999999988776 667788887775444 67788999999887
Q ss_pred HhCCccc----HHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc
Q 013659 120 LLCAFST----FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195 (438)
Q Consensus 120 l~~~~~~----~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~ 195 (438)
....+.. -...+.+...|+..... . .+ +..|..++.......+........|. ....+
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g---~-------~~-------~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~ 224 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATN---K-------ET-------ATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQ 224 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHT---C-------ST-------TTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhC---C-------cc-------HHHHHHHHHHHHHhCCCcccHHHHHH-HHHHc
Confidence 7665521 11122233333332210 0 01 23333333333333332111122222 55677
Q ss_pred CCCHHHHHHHHHHHHHhc----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 196 GKDMVSARGVWERLLKIS----------GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~----------~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
| +++.|.++++.+++.+ |++++.....|.+....|+ .|..++.++... .++.|
T Consensus 225 g-~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 225 R-NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp T-CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred C-CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 7 8999999999777663 7788887788877777786 778888888873 44444
No 375
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.60 E-value=0.00066 Score=56.08 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=73.6
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcC-----------CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKN-----------TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-----------~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y 223 (438)
.++......|.+|+.++...... .+....+|...+......| +++.|...+++++...|++...|...
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 45666667777777765432210 2234467888888888899 89999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhc
Q 013659 224 ISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 224 ~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.......|+++.|...|++++..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999999999983
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.58 E-value=4.2e-05 Score=60.08 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=38.7
Q ss_pred CceEEEeCCCCC-----CCHHHHHHHhcCCCCeeEEEEeecCC----CCCCcceeeC
Q 013659 391 ECTAFLSNINLK-----ATYEDLRRFFSDVGGVSSIRILHDKF----TGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~-----~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~~fv 438 (438)
.++|++.|+-.. --+++|++.|++||.|.+|.|+.++. +++++|||||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV 76 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFV 76 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEE
Confidence 348999998322 13689999999999999999998854 4678899997
No 377
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.54 E-value=0.0083 Score=51.98 Aligned_cols=177 Identities=10% Similarity=-0.057 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----CHHHHHHHHH
Q 013659 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA----SEEEISTVFE 117 (438)
Q Consensus 42 ~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~----~~~~~~~i~~ 117 (438)
+...|+++... .++..+......+.. .++.+.+...|++|+.. .....+..+...+.. + +.+++...|+
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR--NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS--STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCCHHHHHHHHH
Confidence 44556666554 455555555554443 24555566666666653 233444443332222 3 5666666777
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCc--hhHHHHHHHHHHHHH-
Q 013659 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD--GLLRLYAYWAHLEQS- 194 (438)
Q Consensus 118 ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~--~~~~l~~~~a~~e~~- 194 (438)
+|...+... .+..+-..+.... . ...++ .+|+.++.++....+ .....+...+.+...
T Consensus 78 ~A~~~g~~~--a~~~Lg~~y~~g~-------g---~~~d~-------~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVEAGSKS--GEIVLARVLVNRQ-------A---GATDV-------AHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHTTCHH--HHHHHHHHHTCGG-------G---SSCCH-------HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHH--HHHHHHHHHHcCC-------C---CccCH-------HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 766544321 1111111110000 0 00222 334444444433333 123455555655555
Q ss_pred ---cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-cc-----cHHHHHHHHHHHHhc
Q 013659 195 ---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE-LD-----HINEARSIYKRCYSK 246 (438)
Q Consensus 195 ---~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~-~g-----~~~~ar~i~~ral~~ 246 (438)
.. |++.|...|++++.. +.+...+.....+... .| +++.|...|++|+..
T Consensus 139 ~g~~~-d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 139 VHGPE-DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp SSSSC-CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 44 899999999999988 3333334344444332 23 899999999999973
No 378
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.50 E-value=0.0004 Score=68.35 Aligned_cols=117 Identities=5% Similarity=-0.007 Sum_probs=85.0
Q ss_pred hhhHhHHHHHhcCCCCC-----------hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Q 013659 3 NARAHLEEQISRQDLSD-----------SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL 71 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~-----------~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~ 71 (438)
+|...|+.+|...|... +.....|..++....+.|+++.|+..|++||..+|.+...|......+.. .
T Consensus 286 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~-~ 364 (457)
T 1kt0_A 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL-M 364 (457)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-c
Confidence 46678888887766410 01156888999989999999999999999999999999999999987764 4
Q ss_pred cchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013659 72 KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 72 ~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
++.+.+...|++|+...|....+|..+...+.......+....+|.+++
T Consensus 365 g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 365 NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999888888877655443332333444555544
No 379
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.49 E-value=0.014 Score=63.76 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=54.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 013659 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~ 114 (438)
..|+.++|..+++|+ .++.+|..|+...... +..+.+...|.+| ...+.|...+..+++ .+..+++-.
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~-G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQK-GMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhC-CCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHH
Confidence 344556666666554 6688999998877754 4556688888776 556777787776665 567888888
Q ss_pred HHHHHHhCC
Q 013659 115 VFEKSLLCA 123 (438)
Q Consensus 115 i~~ral~~~ 123 (438)
.|..|....
T Consensus 1156 yL~mArk~~ 1164 (1630)
T 1xi4_A 1156 YLQMARKKA 1164 (1630)
T ss_pred HHHHHHhhc
Confidence 888877544
No 380
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.00033 Score=66.98 Aligned_cols=100 Identities=10% Similarity=-0.095 Sum_probs=79.0
Q ss_pred hhhHhHHHHHhcCCC------------CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 013659 3 NARAHLEEQISRQDL------------SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~------------~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~ 70 (438)
+|...|+.+|...+. .++.....|..++......|+++.|+..|++||...|.+...|..++..+..
T Consensus 241 ~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 319 (370)
T 1ihg_A 241 MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG- 319 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-
Confidence 355677777762110 1234677899999988999999999999999999999999999999887664
Q ss_pred ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013659 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
.++.+.+...|++|+...|....+|..+...+.
T Consensus 320 ~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 320 LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456788999999999999998888887766444
No 381
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0015 Score=49.51 Aligned_cols=69 Identities=13% Similarity=0.000 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC
Q 013659 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~ 91 (438)
+...|...+......|+++.+...|++++...|.++.+|...+..+.. .+..+.+...|++++...|..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence 456788888888899999999999999999999999999999987664 456788999999999999986
No 382
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.36 E-value=0.0021 Score=50.76 Aligned_cols=61 Identities=7% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+...+......| +++.|...|++++..+|+...+|..........|+++.|...|++++..
T Consensus 11 ~~~lG~~~~~~~-~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 11 EKDLGNAAYKQK-DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444455555666 7888888888888888887777777777777778888888888888763
No 383
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.36 E-value=0.059 Score=46.43 Aligned_cols=184 Identities=13% Similarity=-0.017 Sum_probs=115.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--cchhHHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDV 80 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~i 80 (438)
++...|+.+.... +...+.....+....++++.+...|++|+.. .++..+.....++...+ .+.+.+...
T Consensus 4 eA~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4566778887652 4556777777777789999999999999986 57888888777665411 167789999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 013659 81 YSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (438)
Q Consensus 81 ~erAl~~~p~~~~lW~~y~~~le~---~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (438)
|++|+. +.....+..+...+.. ...+.+.+...|++|+..++. ....+..+-..+.... . ...
T Consensus 76 ~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~-------g---~~~ 143 (212)
T 3rjv_A 76 AEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV-------H---GPE 143 (212)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS-------S---SSC
T ss_pred HHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC-------C---CCC
Confidence 999977 4555666665553332 146789999999999988762 1222332222221100 0 013
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhcc
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-----GKDMVSARGVWERLLKISG 214 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-----~~~~~~ar~i~e~~l~~~~ 214 (438)
++......|.+|... ..+. ..+...+.+...- ..|++.|...|++++..-.
T Consensus 144 d~~~A~~~~~~A~~~------~~~~--~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL------SRTG--YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CHHHHHHHHHHHHHT------SCTT--HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHc------CCCH--HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 444455555555442 0122 1344445554442 2289999999999998743
No 384
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.011 Score=55.62 Aligned_cols=92 Identities=9% Similarity=-0.081 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 013659 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~ 261 (438)
..++..++-.....| +++.|...+++++..+|+ ...|..........|+++.|...|.+|+.. .+..+...|..-+
T Consensus 277 a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~~l 352 (372)
T 3ly7_A 277 SIIYQIKAVSALVKG-KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIENG 352 (372)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHhCc
Confidence 345555555555567 999999999999999876 344555555666789999999999999973 4444444444433
Q ss_pred HHHHHhCCHHHHHHHHHhh
Q 013659 262 RFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 262 ~fE~~~G~~~~~~~a~~~~ 280 (438)
-| |-|++.+..++...
T Consensus 353 ~F---~sn~~~i~~~~~~~ 368 (372)
T 3ly7_A 353 IF---QTSVPYVVPYLDKF 368 (372)
T ss_dssp SS---CCCHHHHCHHHHHH
T ss_pred ee---ecchhhhHHHHHhc
Confidence 34 67777776666544
No 385
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.35 E-value=0.0015 Score=50.74 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=75.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhhccchh
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKVGN 75 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~-------~~lW~~Y~~~l~~~~~~~~ 75 (438)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+ ..+|...+..+.. .++.+
T Consensus 22 ~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~ 96 (131)
T 1elr_A 22 TALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKYK 96 (131)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hccHH
Confidence 456778888888775 67789889998889999999999999999988876 8888888877664 45778
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Q 013659 76 VVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 76 ~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
.+...|++++...| ...++..+..
T Consensus 97 ~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 97 DAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 89999999999988 5677666554
No 386
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.00027 Score=53.39 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=51.2
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCC
Q 013659 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p 89 (438)
|.+...|..++......|+++.++..|+++|...|.++..|......+.. .+..+.+...|++|+...|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhh
Confidence 34666787777777778888888888888888888888888877776653 3456677888888877654
No 387
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.00097 Score=50.25 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+....+|...+.+....| +++.|...|++++..+|+....|..........|+++.|...|++++.
T Consensus 4 p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334567888888888888 899999999999999999999999999999999999999999999997
No 388
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.34 E-value=0.00036 Score=69.13 Aligned_cols=109 Identities=11% Similarity=-0.187 Sum_probs=61.4
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013659 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
|...|+.+|...|. +...|..++......|+++.|...|++|+...|.+...|...+..+... +..+.+...|++
T Consensus 25 A~~~~~~Al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~ 99 (477)
T 1wao_1 25 AIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDYET 99 (477)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 45566666666554 4556666666666667777777777777777777777766666655433 345566677777
Q ss_pred HHHcCCCCHHHHHHHHHHH-HHccCCHHHHHHHHH
Q 013659 84 ATKNCPWVGELWVRSLLSL-ERSRASEEEISTVFE 117 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~l-e~~~~~~~~~~~i~~ 117 (438)
|+...|.....|..+.... ....+..+++..+++
T Consensus 100 al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 100 VVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7776666655555544320 111233444555555
No 389
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.33 E-value=0.046 Score=59.88 Aligned_cols=189 Identities=14% Similarity=0.068 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHH------
Q 013659 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR------ 97 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~------ 97 (438)
..|...++.....|+++.|..+|.+| ..|...+..+.. .+..+.+..++.+|. +...|..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk-Lge~q~AIEaarKA~-----n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-LGEYQAAVDGARKAN-----STRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH-hCCHHHHHHHHHHhC-----CHHHHHHHHHHHh
Confidence 45666777777888888888888776 366666665543 344566666776662 2244432
Q ss_pred ------------------------HHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccch
Q 013659 98 ------------------------SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (438)
Q Consensus 98 ------------------------y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~ 153 (438)
.+.+++ ..+.++++..+|+++|.....++..+-.+...+..+--.+
T Consensus 1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe-~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek--------- 1331 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVVHADELEELINYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK--------- 1331 (1630)
T ss_pred hhhHHHHHHHHHHhhhcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH---------
Confidence 222233 2566777777777777655443333322222222111111
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------------hccchHHHHH
Q 013659 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK------------ISGAMLEAWQ 221 (438)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~------------~~~~~~~~W~ 221 (438)
+...-..|.....+ .+.+. .-....+|..+..++.+.+ +++.|....-.... ....++++..
T Consensus 1332 ---lmEhlk~f~~rini-~k~~r-~~e~~~lW~elv~LY~~~~-e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy 1405 (1630)
T 1xi4_A 1332 ---MREHLELFWSRVNI-PKVLR-AAEQAHLWAELVFLYDKYE-EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 1405 (1630)
T ss_pred ---HHHHHHHHHHhccc-chHhH-HHHHHHHHHHHHHHHHhcc-cHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH
Confidence 11111122221111 00000 0123468988888887777 88888833222211 1456688888
Q ss_pred HHHHHHHhcc---------------cHHHHHHHHHH
Q 013659 222 SYISMEIELD---------------HINEARSIYKR 242 (438)
Q Consensus 222 ~y~~~e~~~g---------------~~~~ar~i~~r 242 (438)
..+.|....+ +.+++..+|.+
T Consensus 1406 kai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1406 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 8899888776 67777777763
No 390
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.32 E-value=0.0053 Score=60.13 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhccchHHHHHHHHHH-H--HhcccHHHH
Q 013659 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM---GKDMVSARGVWERLLKISGAMLEAWQSYISM-E--IELDHINEA 236 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~---~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~-e--~~~g~~~~a 236 (438)
-+.+|+.++.++....+.....+...+.+...- .+++++|...|+++. |.+...+.....+ . ...++++.|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 445566666655554444444444455444322 137888888888888 5555555555554 3 346788888
Q ss_pred HHHHHHHHh
Q 013659 237 RSIYKRCYS 245 (438)
Q Consensus 237 r~i~~ral~ 245 (438)
...|++++.
T Consensus 271 ~~~~~~Aa~ 279 (452)
T 3e4b_A 271 MKYLDNGRA 279 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888886
No 391
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.24 E-value=0.0032 Score=59.97 Aligned_cols=102 Identities=12% Similarity=-0.088 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013659 23 FQQYMIYLKYEQSSGDPGRVQLLYERAIT----------------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~----------------~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
...|...+......|+++.|...|++||. ..|.+..+|..++..+.. .+..+.+...|++|+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 34677788888889999999999999998 667788899999887664 4567889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013659 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
..|.....|..+...+.. .+..+++...|++|+...+..
T Consensus 302 ~~p~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp TCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred hCchhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 999999999998876554 688999999999999876653
No 392
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.23 E-value=0.033 Score=46.98 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=62.9
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCc-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cchH---HHHHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAML---EAWQSYISME 227 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~~---~~W~~y~~~e 227 (438)
.++......|.+++...... ...+ ....++...+.+....| +++.|...+++++... ++.. ..+.......
T Consensus 80 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 45556667777777765432 1111 23445666788888888 8999999999999762 2222 2456666777
Q ss_pred HhcccHHHHHHHHHHHHhc
Q 013659 228 IELDHINEARSIYKRCYSK 246 (438)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~ 246 (438)
...|+++.|...|++++..
T Consensus 158 ~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHH
Confidence 7889999999999999863
No 393
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.009 Score=43.13 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
....|...+......+ +++.|...|++++...|+...+|..+.......|+++.|...|++++..
T Consensus 8 ~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456777777777888 8999999999999999999999999999999999999999999999983
No 394
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.05 E-value=0.001 Score=65.90 Aligned_cols=98 Identities=10% Similarity=-0.097 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013659 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~ 105 (438)
|...+......|+++.|...|++||..+|.+..+|...+..+.. .+..+.+...|++|+...|.....|......+. .
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNM-A 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H
Confidence 33333334567899999999999999999999999999987764 456788999999999999999999999887555 4
Q ss_pred cCCHHHHHHHHHHHHhCCcc
Q 013659 106 RASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~ 125 (438)
.+..+++...|++|+...+.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 78899999999999987654
No 395
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.01 E-value=0.0049 Score=50.71 Aligned_cols=91 Identities=14% Similarity=-0.011 Sum_probs=71.8
Q ss_pred hcHHHHHHHHHHHHHHHhhhhc----C-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------ccchHHHH--
Q 013659 155 LDYSLIRETFQRASDYLSEQMK----N-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAW-- 220 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~----~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-------~~~~~~~W-- 220 (438)
.++......|++|+.+...... . .+....+|...+.....+| +++.|...|+++|.. +|+....|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 4566667778888877543110 0 0112237888888888999 899999999999999 99999999
Q ss_pred --HHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 221 --QSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 221 --~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
..-.......|+++.|...|++++..
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888999999999999999973
No 396
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.98 E-value=0.059 Score=42.96 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=62.1
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cch---HHHHHHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAM---LEAWQSYISMEI 228 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~---~~~W~~y~~~e~ 228 (438)
.++......|++++...... .+......++...+.+....+ +++.|...+++++... ++. ..++........
T Consensus 63 g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 63 GEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 34555566667766655432 111222456667788888888 8999999999999772 222 345666677777
Q ss_pred hcccHHHHHHHHHHHHh
Q 013659 229 ELDHINEARSIYKRCYS 245 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~ 245 (438)
..|+++.|...|++++.
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88999999999999986
No 397
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.98 E-value=0.011 Score=53.56 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=86.9
Q ss_pred hHHHHHhcCCCCChHhHH--HHHHHHHHHH---hcCC------hhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHhh---
Q 013659 7 HLEEQISRQDLSDSEKFQ--QYMIYLKYEQ---SSGD------PGRVQLLYERAITDFPV--SSDLWLDYTQYLDKT--- 70 (438)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~--~w~~Y~~~e~---~~g~------~~~~~~~yERal~~~p~--~~~lW~~Y~~~l~~~--- 70 (438)
.++.+|..... ++.+ .|..-+...- ..|+ ...+....||||...|. +...|..+..+...-
T Consensus 139 ~~~~~l~~~~~---~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~ 215 (301)
T 3u64_A 139 RLHKVLSRCTR---VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPES 215 (301)
T ss_dssp HHHHHHTTCCG---GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHcCc---cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCc
Confidence 45566655432 2333 5655444331 1233 45788999999999999 677999998876542
Q ss_pred -ccchhHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 71 -LKVGNVVRDVYSRATKNCPWV-GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 71 -~~~~~~~~~i~erAl~~~p~~-~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
+++.+++...|+||+...|.. ...+.-|..++-...++.+.+...+++|+..++.
T Consensus 216 ~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 216 FGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 467899999999999999975 8999999998776668889999999999987665
No 398
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.95 E-value=0.085 Score=44.28 Aligned_cols=164 Identities=9% Similarity=0.028 Sum_probs=89.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCCH
Q 013659 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWVGELWVRSLLSLERSRASE 109 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~------p~~~~lW~~y~~~le~~~~~~ 109 (438)
.|+++.+..+++......+....+|........ ..++.+.+...|++|+..+ |....+|..... +....++.
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM-VERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTCH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHcCCH
Confidence 456666666443333322244555655555444 3345667778888887743 222344555444 33346778
Q ss_pred HHHHHHHHHHHhC---CcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHH
Q 013659 110 EEISTVFEKSLLC---AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYA 186 (438)
Q Consensus 110 ~~~~~i~~ral~~---~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~ 186 (438)
+.+...|++++.. ...........+. .+..+.... .++......|++++...... .........+.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~ 151 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAY-EVATVALHF---------GDLAGARQEYEKSLVYAQQA-DDQVAIACAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHH---------TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHH-HHHHHHHHh---------CCHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 8888888888854 1111111111111 111111111 45666667777777664332 11112234456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 013659 187 YWAHLEQSMGKDMVSARGVWERLLKIS 213 (438)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e~~l~~~ 213 (438)
..+.+....| +++.|...|++++...
T Consensus 152 ~la~~~~~~g-~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 152 GLGDLAQQEK-NLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 6788888888 8999999999999773
No 399
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.92 E-value=0.17 Score=50.07 Aligned_cols=164 Identities=10% Similarity=-0.008 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHc-CCCCHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITD-FPVSSDLWLDYTQYLDKTL--------KVGNVVRDVYSRATKN-CPWVGEL 94 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~-~p~~~~lW~~Y~~~l~~~~--------~~~~~~~~i~erAl~~-~p~~~~l 94 (438)
.+..-|+..-+.|+++.|..+|++.... ...+...|...|..+.... ...+.+..+|++.... ++-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4555566666778888888888777765 3445566665555433211 1123455555555442 2223344
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhh
Q 013659 95 WVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQ 174 (438)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~ 174 (438)
|...|..+-+ .+..+++..+|++....+.
T Consensus 108 yn~lI~~~~~-~g~~~~A~~l~~~M~~~g~-------------------------------------------------- 136 (501)
T 4g26_A 108 FTNGARLAVA-KDDPEMAFDMVKQMKAFGI-------------------------------------------------- 136 (501)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcCC--------------------------------------------------
Confidence 5554443333 3445555555555443322
Q ss_pred hcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+....|...+....+.| +++.|.++|+.+... .|+ ...|...+....+.|+.++|..+|++.-.
T Consensus 137 ----~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 137 ----QPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 122223444444445556 677777777777665 333 44566666666677777777777776554
No 400
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.019 Score=43.14 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
..|...+......| +++.|...|++++...|++..+|..........|+++.|...|++++..
T Consensus 5 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45667777777788 8999999999999999999999999999999999999999999999973
No 401
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.092 Score=50.25 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=120.9
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHH--
Q 013659 34 QSSGDPGRVQLLYERAITDFPVSSD-----------------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL-- 94 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~~~~-----------------lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~l-- 94 (438)
.+.|++..|..+|..++...|...+ .....+.... ..++.+.+...|.+++..++.....
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3568999999999999998776542 2333444333 3456788999999998876543321
Q ss_pred ---HHHHHHHHHHccCCHHHHHHHHHHHHhCCcccH--HHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHH
Q 013659 95 ---WVRSLLSLERSRASEEEISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASD 169 (438)
Q Consensus 95 ---W~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~--~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~ 169 (438)
-...+..+....+..+.+..++++++....... .....++.... .+. ...+++..+...+.++..
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~---------~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA-TLH---------YQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH-HHH---------HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH-HHH---------HHccChHHHHHHHHHHHH
Confidence 112223333345667888888888774321100 00011111100 000 011345555555665555
Q ss_pred HHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cch----HHHHHHHHHHHHhcccHHHHHHHHHH
Q 013659 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAM----LEAWQSYISMEIELDHINEARSIYKR 242 (438)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~----~~~W~~y~~~e~~~g~~~~ar~i~~r 242 (438)
.+... .+.+....++...+++....+ ++++|+.++++++... ++. ..++.....+....|++..|...|..
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 164 EFKKL-DDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHTTS-SCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHhc-ccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44322 123445677888888888889 9999999999999762 222 24666666666777899999999988
Q ss_pred HHh
Q 013659 243 CYS 245 (438)
Q Consensus 243 al~ 245 (438)
++.
T Consensus 242 a~~ 244 (434)
T 4b4t_Q 242 SFE 244 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 402
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.89 E-value=0.023 Score=45.51 Aligned_cols=90 Identities=9% Similarity=-0.003 Sum_probs=64.8
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc------hHHHHHHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEAWQSYISMEI 228 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~------~~~~W~~y~~~e~ 228 (438)
.++......|.+++...... ........++...+.+....| +++.|...|++++...+. ...++........
T Consensus 23 ~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 23 GNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35556667777777665432 111122346667788888888 999999999999987432 2346777777888
Q ss_pred hcccHHHHHHHHHHHHhc
Q 013659 229 ELDHINEARSIYKRCYSK 246 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~~ 246 (438)
..|+++.|...|++++..
T Consensus 101 ~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 899999999999999964
No 403
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.077 Score=50.82 Aligned_cols=163 Identities=9% Similarity=0.005 Sum_probs=104.5
Q ss_pred cchhHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc-HHHHHHH
Q 013659 72 KVGNVVRDVYSRATKNCPWVGE-----------------LWVRSLLSLERSRASEEEISTVFEKSLLCAFST-FEEYLDL 133 (438)
Q Consensus 72 ~~~~~~~~i~erAl~~~p~~~~-----------------lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~-~~~~~~~ 133 (438)
++.+.+..+|..++...|.... ....... +....+..+++...|.+++...... -......
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~-~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQ-LYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4567789999999987765321 2333333 3334678888999998887532211 0111111
Q ss_pred HHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Q 013659 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI- 212 (438)
Q Consensus 134 ~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~- 212 (438)
....++.+. . ...+.......+..++.+.... ........++...+.+....| ++..|..+++.++..
T Consensus 97 ~~~~l~~~~----~-----~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 97 LKTLIEKFE----Q-----VPDSLDDQIFVCEKSIEFAKRE-KRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHC----S-----CCSCHHHHHHHHHHHHHHHHHS-SCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----h-----CCCCHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH
Confidence 111111111 0 0123445556666766655432 223334578888899999999 899999999999976
Q ss_pred -----ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 213 -----SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 213 -----~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+...+++..-+.+....|++++|+.+|++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2334568888888999999999999999999874
No 404
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.013 Score=43.36 Aligned_cols=65 Identities=18% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCHH-HHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHH
Q 013659 32 YEQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (438)
Q Consensus 32 ~e~~~g~~~~~~~~yERal~~~p~~~~-lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~ 97 (438)
.....|+++.+...|++++...|.+.. +|...+..+... +..+.+...|++++...|.....|..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 345678999999999999999999999 999998876644 56788999999999999998887743
No 405
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.76 E-value=0.045 Score=49.72 Aligned_cols=129 Identities=11% Similarity=-0.011 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHHHhCCcccHHH--HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHH
Q 013659 106 RASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (438)
.++.+.+..++++++......... ++.++. .+..+... ..++......|.+|+...... .+......
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~---------~~~~~~Ai~~~~~al~~~~~~-~~~~~~~~ 156 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY-YVAAYVLK---------KVDYEYCILELKKLLNQQLTG-IDVYQNLY 156 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHH-HHHHHHTT---------SSCHHHHHHHHHHHHHTCCCC-SCTTHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHH-HHHHHHHc---------ccCHHHHHHHHHHHHHHhccc-ccHHHHHH
Confidence 578899999999999755443222 122221 11111100 024445556666666532111 11112244
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---c----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI---S----GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~----~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
++...+.+....| +++.|...|++++.. . +....++..........|+++.|...|++|+..
T Consensus 157 ~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 157 IENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6777788888888 899999999999964 2 222347788888888999999999999999974
No 406
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.71 E-value=0.021 Score=55.08 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHhcccHHH
Q 013659 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDHINE 235 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~-~~~~~ar~i~e~~l~~~~-----~~~~~W~~y~~~e~~~g~~~~ 235 (438)
+-|++++.++...++..+.+..+|-..+-++.+.. +.+....+.|...++..+ .+..+|..++-+....+++++
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 44677778887777666667778888877776543 134445555555555566 667899999999999999998
Q ss_pred HHHHHHHH
Q 013659 236 ARSIYKRC 243 (438)
Q Consensus 236 ar~i~~ra 243 (438)
|..+.-..
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 88765443
No 407
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.62 E-value=0.049 Score=53.79 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=71.3
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------ccchHHHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYIS 225 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--------~~~~~~~W~~y~~ 225 (438)
.+++.+...+++++......+.. ++.....+...+.++..+| +++.|..+++++|.. +|+........+.
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34566667778888877777764 4445677778888888999 899999999999976 3444456677777
Q ss_pred HHHhcccHHHHHHHHHHHHhc
Q 013659 226 MEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 226 ~e~~~g~~~~ar~i~~ral~~ 246 (438)
.....|+++.|..+|++|+..
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 888899999999999999964
No 408
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.59 E-value=0.12 Score=46.88 Aligned_cols=129 Identities=11% Similarity=-0.018 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHHhCCcccHHH--HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHH
Q 013659 106 RASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~ 183 (438)
.++.+.+...+.+++......... .+.++. ....+.... .++......|.+|+...... .+......
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~A~~~~~~al~~~~~~-~~~~~~~~ 156 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY-YVAAYVLKK---------VDYEYCILELKKLLNQQLTG-IDVYQNLY 156 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHHHTS---------SCHHHHHHHHHHHHTTCCCS-SCTTHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHH-HHHHHHhcC---------CCHHHHHHHHHHHHHHHhcC-CchHHHHH
Confidence 577888999999998765432211 111111 111110000 23444444555554432211 11112345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---ccchH----HHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI---SGAML----EAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~~~~----~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
++...+.+....| +++.|...|++++.. .++.. .++..........|+++.|...|++++..
T Consensus 157 ~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 157 IENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777888888888 999999999999944 45422 57777888888899999999999999974
No 409
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.46 E-value=0.034 Score=41.16 Aligned_cols=67 Identities=12% Similarity=-0.100 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 180 GLLRLYAYWAHLEQSMGKD--MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~--~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
....++..++......++. ...|+.++++++..+|+++..+..........|+++.|..+|++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456888898887655522 689999999999999999998888888888999999999999999984
No 410
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.45 E-value=0.012 Score=43.74 Aligned_cols=68 Identities=12% Similarity=-0.133 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC
Q 013659 22 KFQQYMIYLKYEQSSGD---PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~---~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~ 90 (438)
+.+.|..|+....-.++ ...+..++++||...|.++..++......... ++...+...|++++...|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~-g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS-FRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Confidence 44555555555533322 45555555666665565555555555544432 3445555555555555554
No 411
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.38 E-value=0.2 Score=45.92 Aligned_cols=191 Identities=10% Similarity=-0.001 Sum_probs=115.7
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013659 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP--VSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p--~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
...|++.+...+. ....+.-.+......|+++.+..++.++|...| .+.++....+..+... +..+.++.+++
T Consensus 86 ~~~l~~l~~~~~~----~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~ 160 (310)
T 3mv2_B 86 IEELENLLKDKQN----SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFD 160 (310)
T ss_dssp CHHHHHTTTTSCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 3456666654322 222344455555667999999999999999987 8889999999877754 56788999999
Q ss_pred HHHHcCC---CC-HHHHHHHHHH---HHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 013659 83 RATKNCP---WV-GELWVRSLLS---LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (438)
Q Consensus 83 rAl~~~p---~~-~~lW~~y~~~---le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (438)
++....| |. ..+...++.. +....+....+..+|+++....+. +.....++.. ++ +. .
T Consensus 161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~---~~--~~---------g 225 (310)
T 3mv2_B 161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNL---HL--QQ---------R 225 (310)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHH---HH--HH---------T
T ss_pred HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHH---HH--Hc---------C
Confidence 9988888 22 2333333321 222344678889999997765443 2222222221 11 11 3
Q ss_pred cHHHHHHHHHHHHHHHhhhhcC----CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHH
Q 013659 156 DYSLIRETFQRASDYLSEQMKN----TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~----~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~ 219 (438)
++..+...++...... +.+.. .+.........+-+...+| + .|.++++++...+|+++-+
T Consensus 226 ~~~eAe~~L~~l~~~~-p~~~~k~~~~p~~~~~LaN~i~l~~~lg-k--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDY-YSVEQKENAVLYKPTFLANQITLALMQG-L--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp CHHHHHHHHHHHHSHH-HHTTTCHHHHSSHHHHHHHHHHHHHHTT-C--TTHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHHhc-ccccccccCCCCCHHHHHHHHHHHHHhC-h--HHHHHHHHHHHhCCCChHH
Confidence 4444444444222211 00000 1234456666666767777 4 7899999999999987653
No 412
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.38 E-value=0.22 Score=48.02 Aligned_cols=224 Identities=12% Similarity=0.006 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|+++.|+..|++| .++..|...+.-+... ++.+.+..+.. .|...|. .+. ..+..++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~-~ef~lA~~~~l-~L~~~ad--~l~-~lv~~Ye- 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG-KEFRLAQMCGL-HIVVHAD--ELE-ELINYYQ- 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT-TCHHHHHHTTT-TTTTCHH--HHH-HHHHHHH-
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc-CcHHHHHHHHH-HHHhCHh--hHH-HHHHHHH-
Confidence 4777777777777777777777777 4677887776655543 23343432222 1222232 233 2233333
Q ss_pred ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCc-----
Q 013659 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD----- 179 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~----- 179 (438)
..+..+++..+|++++......+..+..+-..+..+-- ..+. +.++.+...+ +.+
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p---------------~k~~----ehl~~~~~~i-ni~k~~~~ 278 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP---------------QKMR----EHLELFWSRV-NIPKVLRA 278 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH---------------HHHH----HHHHHHSTTS-CHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH---------------HHHH----HHHHHHHHHh-cCcHHHHH
Confidence 46778888899999887665444333333222221111 0111 1111111111 111
Q ss_pred -hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------ccchHHHHHHHHHHHHhcc---------------
Q 013659 180 -GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI------------SGAMLEAWQSYISMEIELD--------------- 231 (438)
Q Consensus 180 -~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~------------~~~~~~~W~~y~~~e~~~g--------------- 231 (438)
....+|..+..+....+ +++.|....-..... .+.+.++....+.|.....
T Consensus 279 ~~~~~~w~e~~~ly~~~~-e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~l 357 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYE-EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 357 (449)
T ss_dssp HHTTTCHHHHHHHHHHTT-CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhhc-hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 12347888888887777 788776654333211 3445677777777765321
Q ss_pred cHHHHHHHHHHHHhcc--------cCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 232 HINEARSIYKRCYSKR--------FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 232 ~~~~ar~i~~ral~~~--------~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
|..++..+|++.-... ....+...+=+++-++--+.++.++++..++.+
T Consensus 358 d~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~~~ 414 (449)
T 1b89_A 358 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAY 414 (449)
T ss_dssp CHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 2344555555432210 011122345556666666666666666666543
No 413
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.27 E-value=0.061 Score=39.48 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=52.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 189 AHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~-~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
+......+ +++.|...|++++...|++.. +|..........|+++.|...|++++.. .++.+
T Consensus 7 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 69 (99)
T 2kc7_A 7 IKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSP 69 (99)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTST
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence 33445667 899999999999999999998 9999999999999999999999999983 44444
No 414
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.18 E-value=0.0029 Score=49.10 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=32.2
Q ss_pred ceEEEeCCCCCCC----------HHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013659 392 CTAFLSNINLKAT----------YEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+.|.+.|+=..-. +++|++.|++||.|.+|.|..+. ++|||||
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV 60 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYV 60 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEE
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEE
Confidence 3677777633222 35889999999999999987652 5899997
No 415
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.10 E-value=0.92 Score=44.74 Aligned_cols=171 Identities=11% Similarity=0.027 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHh
Q 013659 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (438)
Q Consensus 94 lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~ 172 (438)
++...|..+- ..++.+++..+|+++...+.. +...|-.+...++ +...........++ ++|..++.
T Consensus 28 ~l~~~id~c~-k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~-----~~~~~~~~~~~~~l-------~~A~~lf~ 94 (501)
T 4g26_A 28 LLKQKLDMCS-KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCS-----LAEAATESSPNPGL-------SRGFDIFK 94 (501)
T ss_dssp HHHHHHHHTT-TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-----TCCCCSSSSCCHHH-------HHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-----hCCchhhhhhcchH-------HHHHHHHH
Confidence 3444344333 367788889999988865543 2222222221110 11000000011223 33444443
Q ss_pred hhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCC
Q 013659 173 EQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250 (438)
Q Consensus 173 ~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~ 250 (438)
.+... ..+....|...+....+.| +++.|..+|+.+... ..-+...|...|....+.|+++.|..+|+......+.+
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 33322 2334456777788888889 899999999999876 32246678888998889999999999999998754433
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 251 ~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
....+...+.-....|+.+.....+++.
T Consensus 174 --d~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 174 --EEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3467888888889999988776655543
No 416
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.10 E-value=0.046 Score=53.02 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=71.8
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------ccchHHHHHHHHH
Q 013659 155 LDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYIS 225 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--------~~~~~~~W~~y~~ 225 (438)
.+++.+...+++++......+.. ++.....+...+.++..+| ++++|..+++++|.. +|+....+...+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666677888888887777764 3445567777888888899 899999999999976 3444456777777
Q ss_pred HHHhcccHHHHHHHHHHHHhc
Q 013659 226 MEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 226 ~e~~~g~~~~ar~i~~ral~~ 246 (438)
....+|+++.|..+|++|+..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 888899999999999999963
No 417
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.81 E-value=0.26 Score=48.55 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=83.9
Q ss_pred ccCCHHHHHHHHHHHHhC-----CcccHHH---HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhc
Q 013659 105 SRASEEEISTVFEKSLLC-----AFSTFEE---YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~-----~~~~~~~---~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~ 176 (438)
..+..+++..+|+++|.. +..++.. +-.+-..+ .. -++++.....+++++.+....++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y-----~~---------~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL-----SY---------LQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-----HH---------TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HH---------hcCHHHHHHHHHHHHHHHHHHcC
Confidence 467788999999999843 2222221 11111111 11 15777888899999999888887
Q ss_pred CC-chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 177 NT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 177 ~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--------~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.. +.....+...+.++..+| +++.|..+|++++.. +|...++-....+.....+.+..|-.+|.++..
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 444566777898999999 899999999999976 333344443444444556667777777777765
No 418
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.81 E-value=2.3 Score=39.83 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=78.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHcc--CCH---HHHHH
Q 013659 46 YERAITDFPVSSDLWLDYTQYLDKT----LKVGNVVRDVYSRATKNCPWVGELWVRSLLSL--ERSR--ASE---EEIST 114 (438)
Q Consensus 46 yERal~~~p~~~~lW~~Y~~~l~~~----~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l--e~~~--~~~---~~~~~ 114 (438)
-+|+...-|.+.+.|-.|+.-...- ......++.+|++|+..-|.....|....... .... ... ..+..
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 3455566677777777776544311 12235688888888888888766555422211 1111 111 12222
Q ss_pred HHHHHHhC--CcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q 013659 115 VFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (438)
Q Consensus 115 i~~ral~~--~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (438)
.+..+... .+.....+..+-... ... .+++.....+++|+.. ++. ...|...+.+.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~--l~~------------gd~d~A~~~l~rAl~L-------n~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSA--LVK------------GKTDESYQAINTGIDL-------EMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHH--HHH------------TCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHH--HhC------------CCHHHHHHHHHHHHhc-------CCC-HHHHHHHHHHH
Confidence 23322111 111111111110000 000 3444444555555543 232 33455667777
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHH-HHHH
Q 013659 193 QSMGKDMVSARGVWERLLKISGAMLE-AWQS 222 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~-~W~~ 222 (438)
...| +.+.|.+.|++++..+|...- .|.+
T Consensus 321 ~~~G-~~~eA~e~~~~AlrL~P~~~t~~~~~ 350 (372)
T 3ly7_A 321 EMKG-MNREAADAYLTAFNLRPGANTLYWIE 350 (372)
T ss_dssp HHTT-CHHHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHHhcCCCcChHHHHh
Confidence 7778 999999999999999887642 4443
No 419
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=94.75 E-value=0.02 Score=50.09 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=29.8
Q ss_pred CHHHHHHHhcCCCCeeEEEEeec----CCCCCCcceeeC
Q 013659 404 TYEDLRRFFSDVGGVSSIRILHD----KFTGKSRVSFFL 438 (438)
Q Consensus 404 ~~~~l~~~f~~~G~i~~~~~~~~----~~~~~~~g~~fv 438 (438)
.+++|++.|++||.|.++.|+.+ +.+|+++||+||
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv 180 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFV 180 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEE
Confidence 56789999999999999999854 345689999997
No 420
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.45 E-value=0.19 Score=48.70 Aligned_cols=89 Identities=9% Similarity=-0.025 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------ccchHHHHHHHHHH
Q 013659 156 DYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISM 226 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--------~~~~~~~W~~y~~~ 226 (438)
+++.+...+++++......+.. ++.........+.+...+| ++++|..++++++.. +|+....+...+..
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 3444555566666555555543 3344567777888888889 899999999999975 34444566677778
Q ss_pred HHhcccHHHHHHHHHHHHh
Q 013659 227 EIELDHINEARSIYKRCYS 245 (438)
Q Consensus 227 e~~~g~~~~ar~i~~ral~ 245 (438)
....|+++.|..+|++|+.
T Consensus 381 ~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 8889999999999999996
No 421
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.15 E-value=1.4 Score=35.66 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhc-c-chHHHHHHHHHHHHhcc
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--KDMVSARGVWERLLKIS-G-AMLEAWQSYISMEIELD 231 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~--~~~~~ar~i~e~~l~~~-~-~~~~~W~~y~~~e~~~g 231 (438)
++..++..|.+... ..+...+....|+-...+.. .++.++..+++.+++.. | +..+.+...+-...+.|
T Consensus 13 ~l~~~~~~y~~e~~-------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHc-------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 34455566655543 12233345555665555433 14669999999999997 7 44666666666668899
Q ss_pred cHHHHHHHHHHHHhcccCCCCh
Q 013659 232 HINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~ 253 (438)
++++|+..++++|.. .+++.
T Consensus 86 ~Y~~A~~y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 86 EYEKALKYVRGLLQT--EPQNN 105 (152)
T ss_dssp CHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHhc--CCCCH
Confidence 999999999999983 44444
No 422
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.38 E-value=0.13 Score=37.50 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=27.9
Q ss_pred eEEEeCCCC----CC-CH---HHHHHHhcCCCCeeEEEEeecC
Q 013659 393 TAFLSNINL----KA-TY---EDLRRFFSDVGGVSSIRILHDK 427 (438)
Q Consensus 393 ~v~v~nl~~----~~-~~---~~l~~~f~~~G~i~~~~~~~~~ 427 (438)
||+|...|. +. ++ .+|.+.|.+||.|..++++.|+
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 899888772 22 32 5789999999999999999874
No 423
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.40 E-value=4.2 Score=31.80 Aligned_cols=106 Identities=7% Similarity=0.018 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----cccHHHHHHH
Q 013659 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSI 239 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~----~g~~~~ar~i 239 (438)
+.+|+.++.++....+.... .+.+..... .++.|...|+++.+. .+...+.....+... .++++.|...
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~-~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC----LSLVSNSQI-NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH----HHHHTCTTS-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhhh----HHHHHHcCC-CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34455555444433333221 444443333 788899999999876 223444444444444 5689999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013659 240 YKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 240 ~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
|++|... ..+...+..=.-+..-.|...++..|+.-.
T Consensus 84 ~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 84 YSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 9999873 334443333333333344455555555443
No 424
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.22 E-value=2.3 Score=31.49 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 013659 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~ 224 (438)
++.....-|+.|+...............++..++.....+| +++.|...++++++..|++..+.....
T Consensus 20 ~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 44444455555555443221112345678888888888999 899999999999999998876544433
No 425
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.29 E-value=5.2 Score=29.47 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 187 YWAHLEQSMGKDMVSARGVWERLLKIS-------GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e~~l~~~-------~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
..+.+....+ ++..|..-|+.+++.. .....++..+.......|+++.|..++++++. +.++.+
T Consensus 10 ~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 10 ELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 3455556777 8999999999999873 23567888888888899999999999999997 344444
No 426
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.25 E-value=1.7 Score=41.91 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=62.4
Q ss_pred cCCCHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---ccCCCChHHHHHHHHHH
Q 013659 195 MGKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK---RFTGTGSEDICHAWLRF 263 (438)
Q Consensus 195 ~~~~~~~ar~i~e~~l~~--------~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~---~~~~~~~~~i~~~~~~f 263 (438)
.| ++++|..+++++|.. +|+........+......|++++|..+|+++|.. .+..+.| .+...+.++
T Consensus 311 ~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nL 388 (433)
T 3qww_A 311 YK-SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-NVASMWLKL 388 (433)
T ss_dssp TS-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHH
Confidence 44 799999999999985 3444456677777788899999999999999964 2344444 566666666
Q ss_pred HHHhCCHHHHHHHHHhhhhhHH
Q 013659 264 EREYGTLEDFDHSVQKVTPRLE 285 (438)
Q Consensus 264 E~~~G~~~~~~~a~~~~~~~l~ 285 (438)
-..|.+...+.+|+.-+..++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 6666555555555555544443
No 427
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.66 E-value=2.2 Score=34.45 Aligned_cols=87 Identities=7% Similarity=-0.127 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCCHHHHHH
Q 013659 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVYSRATKNC-P-WVGELWVRSLLSLERSRASEEEIST 114 (438)
Q Consensus 39 ~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~i~erAl~~~-p-~~~~lW~~y~~~le~~~~~~~~~~~ 114 (438)
...+...|++.+...+.+.+...+|+--|.... .+..+...+|+..++.- | ...+.+........ ..++.+.++.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHH
Confidence 445677888888888888899999987776432 13446778888888876 5 22333333333233 3688899999
Q ss_pred HHHHHHhCCccc
Q 013659 115 VFEKSLLCAFST 126 (438)
Q Consensus 115 i~~ral~~~~~~ 126 (438)
.++++|...|.+
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 999999887764
No 428
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.64 E-value=0.26 Score=36.17 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=28.6
Q ss_pred eEEEeCCCCC------CCH---HHHHHHhcCCCCeeEEEEeecC
Q 013659 393 TAFLSNINLK------ATY---EDLRRFFSDVGGVSSIRILHDK 427 (438)
Q Consensus 393 ~v~v~nl~~~------~~~---~~l~~~f~~~G~i~~~~~~~~~ 427 (438)
||+|..++.+ .++ .+|.+.|.+||.|..++++.|+
T Consensus 17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred eEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 9999998754 332 4688999999999999999884
No 429
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=86.63 E-value=1.6 Score=31.85 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=33.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCC
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTG 430 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~ 430 (438)
++|-|.+||+++|++++.+.+...+.+.....+.++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~ 40 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL 40 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC
Confidence 478999999999999999999999988877877765443
No 430
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.40 E-value=13 Score=35.57 Aligned_cols=92 Identities=8% Similarity=-0.167 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHhC-----CcccHHH---HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013659 106 RASEEEISTVFEKSLLC-----AFSTFEE---YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~-----~~~~~~~---~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
.+..+++..++++++.. +..++.. +-.+...+. . .++++.....+++++.+....+..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-----~---------~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-----N---------LGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-----H---------HTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-----h---------hccHHHHHHHHHHHHHhHHHHcCC
Confidence 46778899999999954 2222221 111111111 1 156778888899999988888775
Q ss_pred Cc-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 178 TD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 178 ~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
.. .....+...+.++..+| +++.|..+|++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g-~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQG-MFPQAMKNLRLAFDI 400 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 43 34456667888888999 899999999999976
No 431
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.88 E-value=13 Score=28.77 Aligned_cols=111 Identities=11% Similarity=-0.071 Sum_probs=69.5
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchhHHHH
Q 013659 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRD 79 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~ 79 (438)
++...|+.+...... .. . ...+....+.++.+...|++|... .++..+.....+...- .++.+.+..
T Consensus 13 ~A~~~~~~aa~~g~~----~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 13 KAIQYYVKACELNEM----FG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHTTCT----TH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCH----hh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 345567777655432 11 1 333333445667788999999886 5667777666655431 356677889
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCcc
Q 013659 80 VYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 80 i~erAl~~~p~~~~lW~~y~~~le~~---~~~~~~~~~i~~ral~~~~~ 125 (438)
.|++|+.. .....+......+..- ..+.+.+...|++|...+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999885 3344444444433321 46778888889998876654
No 432
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=81.13 E-value=2.6 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013659 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.||+-++|.+....||.++|++||.| .|+.+-|
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD 49 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD 49 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC
Confidence 56666999999999999999999954 5676665
No 433
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.71 E-value=17 Score=34.25 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=32.3
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013659 31 KYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 31 ~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
+.....|+...+....++++...|.+..+|...+..+...+ ....+..+|+++.+
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD-RQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 33344566666666666666666666666666666665433 33446666655544
No 434
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=79.09 E-value=2.3 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCC-----CCeeEEEEeec
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDV-----GGVSSIRILHD 426 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~ 426 (438)
.+.++|-+-|||.+++...|+.+..++ |.|..+-++.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD 61 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD 61 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC
Confidence 345699999999999999999999999 99999999887
No 435
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=77.98 E-value=2.9 Score=30.77 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013659 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.||+-++|.+....||.++|++||. ..|+.+-|
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD 39 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD 39 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC
Confidence 5666699999999999999999994 46777766
No 436
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.53 E-value=64 Score=33.25 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
+...=++|....+ +++-|.++-.+++...|+....|...+......|++++|--.+..+
T Consensus 339 LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4444577777777 8999999999999999999999999999999999999999877765
No 437
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.89 E-value=7.8 Score=28.72 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcC-----CCCeeEEEE
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSD-----VGGVSSIRI 423 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~-----~G~i~~~~~ 423 (438)
..+.+|.|.|||..++++.|.-.|+. -|+|.++..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 34569999999999999999999986 357777754
No 438
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=67.41 E-value=26 Score=27.02 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhcCC-chhHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhccchH
Q 013659 165 QRASDYLSEQMKNT-DGLLRLYAYWAHL-EQSMGKDMVSARGVWERLLKISGAML 217 (438)
Q Consensus 165 ~~a~~~l~~~~~~~-~~~~~l~~~~a~~-e~~~~~~~~~ar~i~e~~l~~~~~~~ 217 (438)
.+++.+|...+... +..-+-.++|.-+ ..+++ ++++|+..++.+|...|++.
T Consensus 55 ~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg-~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 55 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCH
Confidence 34444444444433 2122333333222 34445 66666666666666666543
No 439
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.39 E-value=33 Score=32.66 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
..+...+++....| |++.|.++|.++...+ ....++|+.-+++....+|+..+...+.++-..
T Consensus 132 ~~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 132 QAWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SCCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677888888899 9999999999998773 345689999999999999999999999998754
No 440
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=66.66 E-value=42 Score=25.85 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhc-cchHHHHHHHHH-HHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013659 198 DMVSARGVWERLLKIS-GAMLEAWQSYIS-MEIELDHINEARSIYKRCYSKRFTGTGSE 254 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~-~~~~~~W~~y~~-~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (438)
++.++..+++.+++.. |..-.-.+.|+- ...+.|++++||..++..|.. .+++..
T Consensus 53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~n~Q 109 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHH
Confidence 4456888999998875 534433444444 456789999999999999983 455543
No 441
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.59 E-value=1.7 Score=33.14 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCceEEEeCCCCCCCHHH
Q 013659 390 DECTAFLSNINLKATYED 407 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~ 407 (438)
..++|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 445899999999999864
No 442
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=62.17 E-value=36 Score=26.50 Aligned_cols=54 Identities=9% Similarity=0.006 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhccchH-HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 198 DMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~-~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
++.++..+++.+++..|..- +.+...+--.-+.|++++||...+.+|.. .+++.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 56789999999998887544 44433343455789999999999999973 44444
No 443
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=54.43 E-value=52 Score=30.80 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
..+..+...| +...+...+..++..+|-.-.+|...+......|+...|...|+++-.
T Consensus 176 ~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566777 899999999999999999999999999999999999999999988765
No 444
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=53.37 E-value=81 Score=24.85 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHH-HHhcccHHHHHHHHHHHHhcccCCCCh
Q 013659 198 DMVSARGVWERLLKISGAMLEAWQSYISM-EIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~-e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
++.++..+++.+++..|..-.-++.|+-+ .-+.|++++||...+..|.. .+++.
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 56789999999999888655445555554 34789999999999999983 44444
No 445
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=52.73 E-value=34 Score=26.64 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhccchHH
Q 013659 164 FQRASDYLSEQMKNTDGLLRLYAYWAHL-EQSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~-e~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
..+++.+|...+...+..-+-.++|.-+ ..++| ++++||...+.+|...|++..
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg-dY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCCHH
Confidence 3456666655554444333444454443 46778 999999999999999887654
No 446
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=52.41 E-value=6.6 Score=37.93 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=27.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013659 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.++|||. .|..+++.+|.+.|++||+|.++.+-.+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~ 87 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES 87 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc
Confidence 3599998 7999999999999999999998865443
No 447
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.27 E-value=50 Score=26.08 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhccchHH
Q 013659 165 QRASDYLSEQMKNTDGLLRLYAYWAHL-EQSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~-e~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
.+++.+|...+...+..-+-.++|.-+ ..+++ ++++||...+.+|+..|++..
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHH
Confidence 455566655554333334455555544 35667 999999999999999887643
No 448
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=48.49 E-value=15 Score=26.95 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=26.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013659 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
...+|-|..||+++|++++.+.++..-.+.....+..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G 44 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAA 44 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCC
Confidence 3458999999999999998887776655433344433
No 449
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.41 E-value=88 Score=29.85 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc---c--hHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013659 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG---A--MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~---~--~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (438)
.++....+.+....| ++..|..++..+..- .+ . ..++++.-+++....+|+.+|+.++.++....+....++
T Consensus 137 arl~~~La~i~e~~g-~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEG-KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 456777888888888 899999999998754 22 1 246888888888888999999999999865433333333
No 450
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=44.51 E-value=2.8e+02 Score=29.87 Aligned_cols=100 Identities=8% Similarity=-0.045 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHc-CCCCHHHHHHHH
Q 013659 25 QYMIYLKYEQSSGDPGRVQLLYERAIT----DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN-CPWVGELWVRSL 99 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~----~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~-~p~~~~lW~~y~ 99 (438)
.+..+|+..-+.|.+++|..+|+..-. .+.-+.-.|...|.-+-+. +..+.+..+|++.... |.-..-.|...|
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~-G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ-GAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 688899988899999999999966432 3556888888888866655 4567899999999873 433556677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCcc
Q 013659 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
..+-+.+...+.+..+|+.....+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 66666555567888999998876653
No 451
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.28 E-value=19 Score=26.72 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=25.8
Q ss_pred CceEEEeCCCCCC-CH----HHHHHHhcCCCCeeEEEEe
Q 013659 391 ECTAFLSNINLKA-TY----EDLRRFFSDVGGVSSIRIL 424 (438)
Q Consensus 391 ~~~v~v~nl~~~~-~~----~~l~~~f~~~G~i~~~~~~ 424 (438)
+++++|.||+.++ +. ..++.+|..|+++.+....
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 4599999999876 32 4678999999988765543
No 452
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=41.98 E-value=2.7e+02 Score=28.64 Aligned_cols=132 Identities=13% Similarity=0.051 Sum_probs=70.9
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC--------CcccHH---
Q 013659 61 LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFE--- 128 (438)
Q Consensus 61 ~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~-lW~~y~~~le~~~~~~~~~~~i~~ral~~--------~~~~~~--- 128 (438)
-..+.|+.....-.+.+..+|++-....|.... +...++..++......-++.++..+++.. ......
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 333444433333345677888888888775433 33444444444333334455666666532 111110
Q ss_pred --H-HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHH
Q 013659 129 --E-YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGV 205 (438)
Q Consensus 129 --~-~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i 205 (438)
. ...+...-+++|..+ .+ |+-|+.+-.++....|..+.-|...+..+..++ +++.|.-.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K----------~~-------~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-d~e~ALLt 393 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNR----------GD-------YELALGVSNTSTELALDSFESWYNLARCHIKKE-EYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHT----------TC-------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ccCcchHHHHHHHHHHhcc----------Cc-------HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-cHHHHHHH
Confidence 0 112333344455322 22 333444444444446777889999999999999 89988744
Q ss_pred HHHHHHhcc
Q 013659 206 WERLLKISG 214 (438)
Q Consensus 206 ~e~~l~~~~ 214 (438)
|+.+|
T Consensus 394 ----LNScP 398 (754)
T 4gns_B 394 ----INSMP 398 (754)
T ss_dssp ----HHHSC
T ss_pred ----HhcCC
Confidence 44566
No 453
>1pjn_A Histone-binding protein N1/N2; importin alpha/karyopherin alpha, nuclear localization sequence (NLS) recognition, bipartite NLS; 2.50A {Synthetic}
Probab=41.27 E-value=14 Score=19.51 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=6.4
Q ss_pred cccCCCCCCCccC
Q 013659 316 EKRKSDSNISYEQ 328 (438)
Q Consensus 316 ~krk~~~~~~~~~ 328 (438)
.|||.++++....
T Consensus 2 KKrkp~Ees~~~d 14 (26)
T 1pjn_A 2 KKRKTEEESPLKD 14 (26)
T ss_dssp CCCCCSSCCSCCC
T ss_pred CCcCCccccchHH
Confidence 4566555444333
No 454
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.07 E-value=3.3e+02 Score=29.34 Aligned_cols=65 Identities=6% Similarity=-0.131 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccC
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI----SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT 249 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~ 249 (438)
.+..+++-..+.| +++.|..+|..+-+. ..-+.-.|...|+-..+.|.++.|..+|+......+.
T Consensus 129 TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 129 RLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 4555666667777 788888888665422 2223556777777777778888888888877765443
No 455
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=33.65 E-value=2.3e+02 Score=24.33 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013659 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
+....+|+.|.++....+.+ +|-.+.+-+.|+-|+....++++.|..+-..++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567888888776544443 4445677888888877765588888877666654
No 456
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.25 E-value=2.5e+02 Score=24.57 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013659 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (438)
+....+|+.|.++....+.+ +|-.+.+-+.|+-|+....+++++|..+-..++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556777777765443433 344556777777776665557777777666655
No 457
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=33.11 E-value=1.5e+02 Score=25.32 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013659 93 ELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 93 ~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
.|=.+|..|+....++.+.+..+-.+|+
T Consensus 168 GLaLNfSVFyYEIln~p~~Ac~lAk~Af 195 (227)
T 2o8p_A 168 GFIQNLAYILSEKYGEKKQVFNMLNSLG 195 (227)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444333333444445444444443
No 458
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=32.88 E-value=2.5e+02 Score=24.53 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
+....+|+.|.++. ..+.+ +|-.+.+-+.|+-|+....++++.|..+-..++..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567888888876 44443 44456788888888777665898888876666643
No 459
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.84 E-value=2.4e+02 Score=24.27 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013659 157 YSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
.+....+|+.|.++....+.+ +|-.+.+-+.|+-|+....+++++|..+-..++.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667888888876544544 4445678888888877666689888777555553
No 460
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=31.69 E-value=1.5e+02 Score=24.05 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh---ccc------hHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013659 189 AHLEQSMGKDMVSARGVWERLLKI---SGA------MLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~---~~~------~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
++.....+ -++.|.-+...++.. +++ .+.+...|++.....|++.+|-..|++||..
T Consensus 27 ik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33345556 788888888887765 333 1346667777777889999999999999864
No 461
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.67 E-value=1.3e+02 Score=24.57 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013659 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
+++.|.++-+.+ ++...|....+.-...|+++-|..+|.++
T Consensus 20 ~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 20 NLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 455555543332 33445555555555555555555555443
No 462
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=30.15 E-value=2.7e+02 Score=24.10 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013659 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
.....+|+.|.++....+.+ +|-.+.+-+.|+-|+....+++++|..+-..++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567788887766544443 4445677888888777666588887777655553
No 463
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=28.94 E-value=49 Score=25.17 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=26.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEE
Q 013659 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 423 (438)
.+.+.|-|-+.|+... ..+-..|++||.|.+...
T Consensus 22 ~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEecc
Confidence 4567899999999864 446667899999998765
No 464
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.75 E-value=3.1e+02 Score=23.96 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013659 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
+....+|+.|.++....+.+ +|-.+.+-+.|+-|.....+++++|..+-+.++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567888888766544443 4445677888888877766588888777555553
No 465
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.25 E-value=1.7e+02 Score=20.45 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=11.5
Q ss_pred hcccHHHHHHHHHHHHh
Q 013659 229 ELDHINEARSIYKRCYS 245 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~ 245 (438)
..|+++.|-.+|..|+.
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34677777777777764
No 466
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.47 E-value=1.3e+02 Score=28.46 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 013659 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (438)
Q Consensus 218 ~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~ 282 (438)
..+...+++....|++++|..+|.++..........-.++...++.+-..|+...+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46778899999999999999999998875444455567888888888889998887766666543
No 467
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=24.44 E-value=3.4e+02 Score=23.83 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH---HHHHHHHHH
Q 013659 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISME 227 (438)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~---~W~~y~~~e 227 (438)
..++..+...+...|....+=..+.++++-.| +.++|.+-++.+.+.+|+... ++...|.-|
T Consensus 14 ~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 14 QQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 33444444444445666666667777777777 788888888888888777543 334444444
No 468
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.72 E-value=2.9e+02 Score=26.78 Aligned_cols=60 Identities=5% Similarity=0.006 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013659 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
......++-.... ....|+..|.+|+...|+....+...+-+....|+.-.|.-.|-|++
T Consensus 154 ~l~~LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 154 CLVHLGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444566655556 78899999999999999988888877777777776655555555555
No 469
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=22.68 E-value=3.9e+02 Score=23.40 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhh--cC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013659 157 YSLIRETFQRASDYLSEQM--KN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~--~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
.+....+|+.|.++....+ .+ +|-.+.+-+.|+-|+....+++++|..+-+.++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455678888887765444 33 44456778888888776666899888887777654
No 470
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=21.09 E-value=3.1e+02 Score=24.12 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=46.0
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013659 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+.+ +++.+.+.....++..|.+.++=..++++..-.|++++|..=++-+..
T Consensus 9 ~~g-~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTT-CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999888999999999999999988888876
No 471
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=21.06 E-value=2.2e+02 Score=19.81 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.0
Q ss_pred hcccHHHHHHHHHHHHh
Q 013659 229 ELDHINEARSIYKRCYS 245 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~ 245 (438)
..|+++.|-.+|..|+.
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45788888888888875
No 472
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.27 E-value=68 Score=28.31 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=28.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013659 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
..+.|+|||+.++..-|..++.. +.+.++.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 36899999999999999999987 77877777654
Done!