Query 013661
Match_columns 438
No_of_seqs 387 out of 3570
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02948 phosphoribosylaminoim 100.0 4.7E-83 1E-87 671.6 54.0 434 3-436 142-576 (577)
2 COG0041 PurE Phosphoribosylcar 100.0 6E-51 1.3E-55 342.3 17.7 157 272-428 4-160 (162)
3 TIGR01162 purE phosphoribosyla 100.0 6E-48 1.3E-52 332.2 17.0 155 273-427 1-155 (156)
4 PF00731 AIRC: AIR carboxylase 100.0 3E-44 6.5E-49 309.6 12.3 150 271-420 1-150 (150)
5 PLN02735 carbamoyl-phosphate s 100.0 2.2E-41 4.9E-46 378.1 30.0 370 2-412 722-1101(1102)
6 PRK06019 phosphoribosylaminoim 100.0 1.4E-39 3.1E-44 328.1 31.5 247 2-258 120-366 (372)
7 PRK12815 carB carbamoyl phosph 100.0 1.1E-39 2.4E-44 365.7 33.1 357 2-399 690-1053(1068)
8 COG0026 PurK Phosphoribosylami 100.0 1.3E-38 2.8E-43 307.0 29.3 247 2-257 119-365 (375)
9 TIGR01369 CPSaseII_lrg carbamo 100.0 7.4E-38 1.6E-42 350.8 34.2 340 2-381 689-1038(1050)
10 PRK05294 carB carbamoyl phosph 100.0 5.4E-38 1.2E-42 353.1 31.8 354 2-397 689-1051(1066)
11 TIGR01161 purK phosphoribosyla 100.0 1.5E-36 3.3E-41 304.4 29.9 235 2-245 118-352 (352)
12 TIGR01142 purT phosphoribosylg 100.0 1.1E-34 2.3E-39 294.0 32.1 253 2-261 121-378 (380)
13 PRK09288 purT phosphoribosylgl 100.0 3.9E-33 8.5E-38 283.9 32.2 253 2-261 134-391 (395)
14 COG0027 PurT Formate-dependent 100.0 8.8E-34 1.9E-38 264.6 24.3 252 3-261 135-391 (394)
15 PRK08654 pyruvate carboxylase 100.0 3.8E-33 8.3E-38 289.9 29.8 288 3-308 138-443 (499)
16 KOG0238 3-Methylcrotonyl-CoA c 100.0 2.2E-33 4.8E-38 275.5 23.8 289 3-308 134-441 (670)
17 COG4770 Acetyl/propionyl-CoA c 100.0 8.8E-34 1.9E-38 282.7 21.2 287 3-306 138-442 (645)
18 PRK05586 biotin carboxylase; V 100.0 3.8E-32 8.2E-37 280.7 30.4 286 2-304 137-440 (447)
19 TIGR00514 accC acetyl-CoA carb 100.0 6.9E-32 1.5E-36 279.0 31.7 286 3-304 138-440 (449)
20 PRK12833 acetyl-CoA carboxylas 100.0 4.8E-32 1E-36 280.9 29.5 288 2-305 140-444 (467)
21 PRK07178 pyruvate carboxylase 100.0 1.8E-31 3.9E-36 276.9 32.3 288 3-306 137-441 (472)
22 COG1038 PycA Pyruvate carboxyl 100.0 5.7E-32 1.2E-36 276.9 26.7 305 3-328 144-473 (1149)
23 PRK08463 acetyl-CoA carboxylas 100.0 1.6E-31 3.4E-36 277.7 30.3 286 4-305 139-441 (478)
24 COG0439 AccC Biotin carboxylas 100.0 4.5E-31 9.6E-36 266.6 27.8 285 3-304 138-440 (449)
25 TIGR01235 pyruv_carbox pyruvat 100.0 5.9E-31 1.3E-35 293.0 29.4 296 3-318 138-458 (1143)
26 PRK08591 acetyl-CoA carboxylas 100.0 3.1E-30 6.6E-35 267.1 29.9 286 2-304 137-440 (451)
27 PRK12999 pyruvate carboxylase; 100.0 2.5E-30 5.3E-35 289.3 31.2 296 3-318 142-462 (1146)
28 PRK08462 biotin carboxylase; V 100.0 6.6E-30 1.4E-34 264.1 30.3 285 3-305 140-441 (445)
29 PF02786 CPSase_L_D2: Carbamoy 100.0 1.8E-30 3.9E-35 240.4 22.5 178 3-181 24-210 (211)
30 KOG0370 Multifunctional pyrimi 100.0 9.7E-31 2.1E-35 270.8 21.8 333 2-381 1053-1393(1435)
31 PF02222 ATP-grasp: ATP-grasp 100.0 2.4E-30 5.2E-35 231.3 20.7 159 2-162 13-172 (172)
32 KOG0369 Pyruvate carboxylase [ 100.0 2.8E-29 6E-34 252.7 24.1 293 2-312 169-482 (1176)
33 PRK12815 carB carbamoyl phosph 100.0 1.5E-29 3.3E-34 284.0 24.9 243 2-258 148-401 (1068)
34 TIGR01369 CPSaseII_lrg carbamo 100.0 4E-29 8.7E-34 280.6 26.0 243 2-259 147-401 (1050)
35 TIGR02712 urea_carbox urea car 100.0 9.7E-28 2.1E-32 269.9 36.5 346 3-380 136-502 (1201)
36 PRK05294 carB carbamoyl phosph 100.0 6.8E-29 1.5E-33 279.6 26.2 241 2-258 148-402 (1066)
37 PLN02735 carbamoyl-phosphate s 100.0 8.1E-29 1.7E-33 277.4 26.5 242 2-258 164-419 (1102)
38 PRK06111 acetyl-CoA carboxylas 100.0 6E-28 1.3E-32 250.0 30.0 283 3-303 138-438 (450)
39 COG0458 CarB Carbamoylphosphat 99.9 1.5E-26 3.2E-31 226.2 21.2 242 3-258 136-388 (400)
40 KOG2835 Phosphoribosylamidoimi 99.9 3.1E-28 6.8E-33 234.1 5.0 366 57-436 3-372 (373)
41 PRK13789 phosphoribosylamine-- 99.9 1.2E-24 2.7E-29 222.4 29.3 252 2-262 128-412 (426)
42 PRK06395 phosphoribosylamine-- 99.9 1.2E-24 2.6E-29 223.1 28.3 252 4-261 128-408 (435)
43 PRK00885 phosphoribosylamine-- 99.9 1.3E-24 2.8E-29 223.0 27.5 248 2-262 122-404 (420)
44 PRK07206 hypothetical protein; 99.9 1.4E-24 3.1E-29 222.5 27.4 248 3-258 129-406 (416)
45 PRK02186 argininosuccinate lya 99.9 2E-24 4.3E-29 239.7 28.3 253 2-262 127-394 (887)
46 PRK13790 phosphoribosylamine-- 99.9 1.8E-23 3.9E-28 211.3 29.4 248 3-262 88-362 (379)
47 PLN02257 phosphoribosylamine-- 99.9 2.9E-23 6.2E-28 212.6 31.0 256 2-262 122-411 (434)
48 TIGR00877 purD phosphoribosyla 99.9 2.4E-23 5.2E-28 213.9 29.3 254 2-262 124-408 (423)
49 KOG0368 Acetyl-CoA carboxylase 99.9 1.3E-23 2.9E-28 225.4 20.0 255 2-262 224-517 (2196)
50 PRK06524 biotin carboxylase-li 99.9 1.5E-22 3.3E-27 205.7 22.7 176 3-181 165-357 (493)
51 COG1691 NCAIR mutase (PurE)-re 99.9 1.4E-23 3.1E-28 187.9 11.5 126 269-400 116-249 (254)
52 KOG0370 Multifunctional pyrimi 99.9 5.5E-24 1.2E-28 221.1 5.2 243 2-258 518-769 (1435)
53 COG0151 PurD Phosphoribosylami 99.9 5.9E-21 1.3E-25 187.5 25.8 254 2-262 123-409 (428)
54 PF13535 ATP-grasp_4: ATP-gras 99.9 1.2E-21 2.6E-26 177.7 16.6 147 2-153 24-181 (184)
55 PRK05784 phosphoribosylamine-- 99.9 1.8E-20 4E-25 193.9 27.1 251 3-260 131-429 (486)
56 PF07478 Dala_Dala_lig_C: D-al 99.9 5.5E-21 1.2E-25 176.5 20.7 141 9-153 25-177 (203)
57 PRK01966 ddl D-alanyl-alanine 99.9 5E-21 1.1E-25 190.5 19.3 157 9-180 154-321 (333)
58 PRK12767 carbamoyl phosphate s 99.9 1.8E-20 4E-25 185.9 22.3 166 3-182 132-300 (326)
59 PRK14570 D-alanyl-alanine synt 99.9 1.5E-20 3.2E-25 188.5 21.1 145 5-153 158-318 (364)
60 PRK14572 D-alanyl-alanine synt 99.9 1.3E-20 2.9E-25 188.4 19.9 147 5-154 159-318 (347)
61 PRK14568 vanB D-alanine--D-lac 99.9 1.8E-20 3.8E-25 187.3 18.7 157 13-181 161-331 (343)
62 PRK14569 D-alanyl-alanine synt 99.8 4.6E-20 9.9E-25 180.6 18.1 138 12-153 125-267 (296)
63 PRK14571 D-alanyl-alanine synt 99.8 1.1E-19 2.4E-24 178.3 19.0 137 13-154 121-268 (299)
64 PRK01372 ddl D-alanine--D-alan 99.8 2.1E-19 4.5E-24 176.7 19.4 149 3-154 119-273 (304)
65 PRK14573 bifunctional D-alanyl 99.8 1.6E-19 3.5E-24 199.3 20.5 145 9-154 602-759 (809)
66 TIGR01205 D_ala_D_alaTIGR D-al 99.8 3.6E-19 7.7E-24 175.9 19.3 141 11-154 140-288 (315)
67 PF15632 ATPgrasp_Ter: ATP-gra 99.8 6.6E-19 1.4E-23 172.3 16.8 165 2-182 127-311 (329)
68 PF01071 GARS_A: Phosphoribosy 99.8 9.5E-18 2.1E-22 151.7 19.5 149 2-154 22-192 (194)
69 TIGR00768 rimK_fam alpha-L-glu 99.7 8E-17 1.7E-21 155.8 17.0 159 3-172 109-275 (277)
70 PRK13277 5-formaminoimidazole- 99.7 1.9E-16 4.2E-21 155.0 17.4 156 14-172 149-339 (366)
71 TIGR02144 LysX_arch Lysine bio 99.7 2.1E-16 4.6E-21 153.4 17.0 162 3-175 108-276 (280)
72 PF02655 ATP-grasp_3: ATP-gras 99.7 1.2E-16 2.6E-21 142.4 13.5 126 16-153 30-160 (161)
73 COG1181 DdlA D-alanine-D-alani 99.7 4.4E-16 9.4E-21 152.5 16.2 144 8-154 133-289 (317)
74 PRK06849 hypothetical protein; 99.7 3.7E-16 8.1E-21 158.9 15.8 145 3-158 137-283 (389)
75 COG2232 Predicted ATP-dependen 99.7 7.3E-16 1.6E-20 145.9 15.5 215 17-259 149-371 (389)
76 PRK10446 ribosomal protein S6 99.7 7.7E-16 1.7E-20 151.2 15.9 158 4-175 121-287 (300)
77 PRK13278 purP 5-formaminoimida 99.7 2.2E-15 4.8E-20 149.7 18.3 136 15-152 147-313 (358)
78 KOG0237 Glycinamide ribonucleo 99.6 7.2E-14 1.6E-18 140.7 23.3 255 2-262 128-413 (788)
79 PF08443 RimK: RimK-like ATP-g 99.6 1.3E-14 2.8E-19 132.9 14.5 159 3-173 24-189 (190)
80 COG0189 RimK Glutathione synth 99.4 6E-12 1.3E-16 123.7 15.6 142 3-153 140-291 (318)
81 PRK14016 cyanophycin synthetas 99.4 6.7E-12 1.4E-16 136.6 16.1 166 3-174 235-471 (727)
82 TIGR03103 trio_acet_GNAT GNAT- 99.4 5.5E-12 1.2E-16 133.1 14.9 147 3-156 318-527 (547)
83 TIGR01435 glu_cys_lig_rel glut 99.3 1.7E-11 3.8E-16 131.3 14.9 148 3-156 496-717 (737)
84 TIGR02068 cya_phycin_syn cyano 99.3 8.7E-11 1.9E-15 130.3 16.6 167 2-174 233-470 (864)
85 PRK02471 bifunctional glutamat 99.2 9.9E-11 2.2E-15 127.3 14.9 148 3-156 509-731 (752)
86 PLN02941 inositol-tetrakisphos 99.2 1.8E-10 3.9E-15 113.2 13.6 135 11-156 146-309 (328)
87 COG3919 Predicted ATP-grasp en 99.2 1.5E-11 3.2E-16 115.2 5.1 158 9-174 139-310 (415)
88 COG1821 Predicted ATP-utilizin 99.2 9.5E-11 2.1E-15 107.8 9.1 134 20-172 141-277 (307)
89 PF14398 ATPgrasp_YheCD: YheC/ 99.1 2.9E-09 6.3E-14 102.3 18.2 148 3-153 42-235 (262)
90 PRK12458 glutathione synthetas 99.0 5.5E-09 1.2E-13 104.1 15.1 156 3-174 147-321 (338)
91 TIGR02291 rimK_rel_E_lig alpha 99.0 1.5E-08 3.2E-13 99.2 16.0 45 108-153 228-272 (317)
92 TIGR01380 glut_syn glutathione 98.8 1.5E-07 3.3E-12 92.8 17.7 154 3-173 140-307 (312)
93 PRK05246 glutathione synthetas 98.8 7E-08 1.5E-12 95.5 13.3 155 3-174 141-309 (316)
94 PRK05234 mgsA methylglyoxal sy 98.7 9.2E-08 2E-12 83.0 9.2 119 273-410 6-134 (142)
95 cd00532 MGS-like MGS-like doma 98.5 3.1E-07 6.7E-12 76.7 8.0 94 275-381 3-104 (112)
96 TIGR01016 sucCoAbeta succinyl- 98.5 2.2E-06 4.8E-11 87.2 15.9 84 2-85 24-126 (386)
97 cd01422 MGS Methylglyoxal synt 98.5 3.6E-07 7.8E-12 76.6 6.2 95 275-381 3-106 (115)
98 PF02955 GSH-S_ATP: Prokaryoti 98.4 1.5E-06 3.2E-11 78.0 9.5 132 3-151 18-162 (173)
99 PRK00696 sucC succinyl-CoA syn 98.4 1.7E-05 3.7E-10 80.8 17.1 81 2-83 24-123 (388)
100 PF14397 ATPgrasp_ST: Sugar-tr 98.3 1.2E-05 2.7E-10 78.2 15.1 145 3-152 58-261 (285)
101 cd01424 MGS_CPS_II Methylglyox 98.3 2E-06 4.4E-11 71.5 8.1 95 274-381 3-100 (110)
102 COG1759 5-formaminoimidazole-4 98.3 1.6E-05 3.4E-10 76.1 13.4 137 15-153 148-317 (361)
103 cd01423 MGS_CPS_I_III Methylgl 98.2 1.8E-06 3.8E-11 72.6 5.6 94 275-381 4-106 (116)
104 PF05770 Ins134_P3_kin: Inosit 97.9 3.5E-05 7.6E-10 75.1 8.4 136 8-152 127-290 (307)
105 PF03133 TTL: Tubulin-tyrosine 97.8 0.00027 5.9E-09 69.1 12.3 42 19-64 67-108 (292)
106 PF02750 Synapsin_C: Synapsin, 97.7 0.00047 1E-08 61.9 11.4 127 15-151 48-178 (203)
107 smart00851 MGS MGS-like domain 97.3 0.00044 9.5E-09 55.2 5.2 83 286-381 2-90 (90)
108 PF13549 ATP-grasp_5: ATP-gras 97.3 0.0027 5.8E-08 59.5 11.1 85 2-86 31-131 (222)
109 PF02142 MGS: MGS-like domain 97.2 6.1E-05 1.3E-09 60.8 -0.7 83 286-381 2-95 (95)
110 PF06973 DUF1297: Domain of un 97.1 0.013 2.8E-07 52.2 13.2 98 55-153 21-144 (188)
111 smart00878 Biotin_carb_C Bioti 97.1 0.0019 4.2E-08 53.2 7.2 95 192-302 2-103 (107)
112 PF02785 Biotin_carb_C: Biotin 97.1 0.0016 3.4E-08 53.7 6.4 91 192-298 2-99 (107)
113 PF14243 DUF4343: Domain of un 97.0 0.011 2.3E-07 50.7 11.4 115 18-152 2-117 (130)
114 PLN00124 succinyl-CoA ligase [ 97.0 0.025 5.3E-07 58.0 15.5 74 2-77 51-151 (422)
115 PRK14046 malate--CoA ligase su 96.9 0.03 6.5E-07 57.1 15.8 82 3-84 25-124 (392)
116 PLN02235 ATP citrate (pro-S)-l 96.8 0.055 1.2E-06 55.1 16.5 78 3-81 34-129 (423)
117 PF08442 ATP-grasp_2: ATP-gras 96.8 0.01 2.2E-07 54.8 9.9 77 2-79 23-117 (202)
118 COG0045 SucC Succinyl-CoA synt 96.7 0.012 2.6E-07 58.4 10.1 78 2-80 24-117 (387)
119 PF14305 ATPgrasp_TupA: TupA-l 96.7 0.053 1.2E-06 51.4 14.2 131 15-153 54-220 (239)
120 PF11379 DUF3182: Protein of u 95.9 0.075 1.6E-06 51.9 10.6 147 1-153 118-297 (355)
121 cd08550 GlyDH-like Glycerol_de 95.2 0.05 1.1E-06 54.7 6.9 87 271-357 23-110 (349)
122 cd08170 GlyDH Glycerol dehydro 94.8 0.081 1.8E-06 53.1 7.4 87 271-357 23-110 (351)
123 KOG3895 Synaptic vesicle prote 94.4 0.025 5.4E-07 55.1 2.4 117 17-150 239-366 (488)
124 PRK09423 gldA glycerol dehydro 93.8 0.18 3.9E-06 51.0 7.3 87 271-357 30-117 (366)
125 cd08551 Fe-ADH iron-containing 93.6 0.2 4.2E-06 50.7 7.3 87 271-357 24-131 (370)
126 PRK00843 egsA NAD(P)-dependent 93.6 0.23 5E-06 49.9 7.6 85 271-357 35-120 (350)
127 cd08549 G1PDH_related Glycerol 93.1 0.28 6.1E-06 48.9 7.4 86 271-357 25-113 (332)
128 cd08195 DHQS Dehydroquinate sy 93.0 0.36 7.8E-06 48.4 8.0 87 271-357 25-120 (345)
129 cd08173 Gro1PDH Sn-glycerol-1- 93.0 0.34 7.3E-06 48.4 7.7 85 271-357 26-111 (339)
130 KOG2156 Tubulin-tyrosine ligas 93.0 0.75 1.6E-05 47.5 10.0 52 4-64 291-343 (662)
131 cd08171 GlyDH-like2 Glycerol d 92.8 0.24 5.2E-06 49.6 6.4 87 271-357 23-111 (345)
132 cd08175 G1PDH Glycerol-1-phosp 92.7 0.3 6.5E-06 49.0 7.0 86 271-357 24-113 (348)
133 PF14403 CP_ATPgrasp_2: Circul 92.6 0.56 1.2E-05 48.4 8.7 55 8-65 329-385 (445)
134 PF13685 Fe-ADH_2: Iron-contai 92.3 0.11 2.4E-06 49.5 3.1 145 271-416 20-185 (250)
135 TIGR01357 aroB 3-dehydroquinat 92.1 0.58 1.3E-05 46.8 8.1 87 271-357 21-116 (344)
136 COG3199 Predicted inorganic po 92.0 1.5 3.2E-05 43.3 10.3 132 237-400 16-157 (355)
137 cd08177 MAR Maleylacetate redu 91.7 0.32 7E-06 48.5 5.7 86 271-357 24-110 (337)
138 PRK00002 aroB 3-dehydroquinate 91.6 0.74 1.6E-05 46.4 8.3 87 271-357 32-127 (358)
139 cd08197 DOIS 2-deoxy-scyllo-in 91.5 0.8 1.7E-05 46.1 8.3 87 271-357 24-119 (355)
140 cd08183 Fe-ADH2 Iron-containin 91.3 0.47 1E-05 48.1 6.6 85 271-357 23-130 (374)
141 cd08193 HVD 5-hydroxyvalerate 91.3 0.62 1.4E-05 47.2 7.4 87 271-357 27-134 (376)
142 cd08194 Fe-ADH6 Iron-containin 90.9 0.61 1.3E-05 47.3 6.9 87 271-357 24-131 (375)
143 cd08199 EEVS 2-epi-5-epi-valio 90.8 0.98 2.1E-05 45.5 8.2 87 271-357 27-123 (354)
144 cd07766 DHQ_Fe-ADH Dehydroquin 90.7 1.2 2.5E-05 44.4 8.6 86 271-357 24-113 (332)
145 KOG2157 Predicted tubulin-tyro 90.7 2.4 5.2E-05 44.3 11.0 48 17-65 199-251 (497)
146 cd01452 VWA_26S_proteasome_sub 89.7 5.4 0.00012 36.3 11.2 76 243-322 84-162 (187)
147 cd08192 Fe-ADH7 Iron-containin 89.2 1.1 2.4E-05 45.3 7.2 67 271-337 25-93 (370)
148 COG0371 GldA Glycerol dehydrog 88.6 0.88 1.9E-05 45.6 5.7 93 271-365 31-124 (360)
149 PF00465 Fe-ADH: Iron-containi 88.3 0.61 1.3E-05 47.1 4.6 87 271-357 22-130 (366)
150 cd08182 HEPD Hydroxyethylphosp 88.3 1.1 2.4E-05 45.3 6.5 85 271-357 24-132 (367)
151 cd08178 AAD_C C-terminal alcoh 88.0 1 2.2E-05 46.1 6.0 67 271-337 22-90 (398)
152 cd08191 HHD 6-hydroxyhexanoate 87.7 1.1 2.3E-05 45.7 6.0 86 271-357 23-130 (386)
153 cd08176 LPO Lactadehyde:propan 87.6 2.3 4.9E-05 43.2 8.2 87 271-357 29-136 (377)
154 cd08185 Fe-ADH1 Iron-containin 87.5 1.3 2.9E-05 44.9 6.5 67 271-337 26-95 (380)
155 cd08187 BDH Butanol dehydrogen 87.5 1.3 2.8E-05 45.0 6.4 87 271-357 29-137 (382)
156 cd08181 PPD-like 1,3-propanedi 87.3 1.7 3.7E-05 43.8 7.1 87 271-357 26-133 (357)
157 cd08189 Fe-ADH5 Iron-containin 87.2 1.7 3.8E-05 44.0 7.2 87 271-357 27-135 (374)
158 PLN02834 3-dehydroquinate synt 87.0 2.3 4.9E-05 44.1 7.9 87 271-357 101-198 (433)
159 cd08172 GlyDH-like1 Glycerol d 86.7 1 2.2E-05 45.1 5.1 85 271-357 24-109 (347)
160 cd08186 Fe-ADH8 Iron-containin 86.5 1.8 3.9E-05 44.0 6.9 87 271-357 27-136 (383)
161 PRK10586 putative oxidoreducta 85.9 3.4 7.3E-05 41.8 8.3 98 249-357 21-119 (362)
162 cd08174 G1PDH-like Glycerol-1- 84.9 2.4 5.2E-05 42.1 6.7 80 271-357 26-108 (331)
163 cd08169 DHQ-like Dehydroquinat 84.4 3.4 7.4E-05 41.4 7.5 85 271-357 24-118 (344)
164 cd01421 IMPCH Inosine monophos 84.4 1.8 3.8E-05 39.3 4.9 47 274-333 3-49 (187)
165 TIGR02638 lactal_redase lactal 83.9 4.1 9E-05 41.3 8.0 67 271-337 30-98 (379)
166 PRK10624 L-1,2-propanediol oxi 83.8 4.6 9.9E-05 41.1 8.3 67 271-337 31-99 (382)
167 cd08179 NADPH_BDH NADPH-depend 83.8 3.1 6.8E-05 42.1 7.1 67 271-337 24-93 (375)
168 cd08190 HOT Hydroxyacid-oxoaci 82.5 6.8 0.00015 40.3 9.0 67 271-337 24-92 (414)
169 PRK14021 bifunctional shikimat 82.1 7.3 0.00016 41.6 9.3 84 273-357 212-304 (542)
170 cd08188 Fe-ADH4 Iron-containin 82.0 6.7 0.00015 39.7 8.7 67 271-337 29-97 (377)
171 PRK09860 putative alcohol dehy 80.9 5.7 0.00012 40.4 7.7 87 271-357 32-139 (383)
172 PRK15454 ethanol dehydrogenase 77.7 5.2 0.00011 40.9 6.2 54 284-337 64-118 (395)
173 PRK10481 hypothetical protein; 77.6 8.1 0.00018 36.2 7.0 80 270-352 129-210 (224)
174 PF02843 GARS_C: Phosphoribosy 77.2 17 0.00036 29.0 7.8 30 233-262 50-79 (93)
175 PRK15424 propionate catabolism 75.6 39 0.00085 36.1 12.2 131 270-414 14-153 (538)
176 KOG2835 Phosphoribosylamidoimi 75.5 5.5 0.00012 39.8 5.4 72 282-356 248-320 (373)
177 COG1609 PurR Transcriptional r 75.3 48 0.001 32.9 12.3 106 246-354 28-143 (333)
178 COG1454 EutG Alcohol dehydroge 74.9 23 0.0005 35.9 9.8 87 271-357 30-137 (377)
179 cd08180 PDD 1,3-propanediol de 74.9 6 0.00013 39.3 5.7 86 271-357 23-118 (332)
180 PRK13805 bifunctional acetalde 72.1 10 0.00022 43.0 7.3 67 271-337 481-551 (862)
181 PRK00881 purH bifunctional pho 71.2 9.3 0.0002 40.1 6.1 47 274-333 7-53 (513)
182 PRK01372 ddl D-alanine--D-alan 70.8 4.9 0.00011 39.2 3.9 77 270-355 4-89 (304)
183 PRK06203 aroB 3-dehydroquinate 70.6 14 0.0003 37.7 7.3 87 271-357 43-146 (389)
184 PRK05849 hypothetical protein; 68.5 1.7E+02 0.0038 32.7 15.6 142 5-149 41-214 (783)
185 TIGR01506 ribC_arch riboflavin 68.0 13 0.00029 32.5 5.5 46 283-331 12-60 (151)
186 TIGR00355 purH phosphoribosyla 67.7 13 0.00027 39.0 6.2 47 274-333 3-49 (511)
187 COG2515 Acd 1-aminocyclopropan 66.8 13 0.00028 36.3 5.6 35 324-358 179-217 (323)
188 TIGR03405 Phn_Fe-ADH phosphona 66.7 7.9 0.00017 38.9 4.5 64 271-337 24-92 (355)
189 cd01988 Na_H_Antiporter_C The 66.6 35 0.00077 27.9 7.9 56 284-342 56-111 (132)
190 cd08196 DHQS-like1 Dehydroquin 64.5 31 0.00066 34.6 8.2 82 272-357 21-111 (346)
191 cd08198 DHQS-like2 Dehydroquin 64.5 26 0.00056 35.5 7.6 87 271-357 31-134 (369)
192 cd00860 ThrRS_anticodon ThrRS 63.4 37 0.0008 26.0 7.0 57 272-333 3-59 (91)
193 PRK13761 hypothetical protein; 61.4 41 0.00089 31.4 7.6 70 285-357 82-159 (248)
194 TIGR02329 propionate_PrpR prop 61.2 72 0.0016 34.0 10.6 97 308-414 36-143 (526)
195 COG4126 Hydantoin racemase [Am 60.2 9.5 0.0002 35.4 3.3 70 271-344 110-193 (230)
196 cd08184 Fe-ADH3 Iron-containin 59.6 23 0.00049 35.6 6.3 62 272-336 27-92 (347)
197 PF03129 HGTP_anticodon: Antic 58.5 29 0.00062 27.1 5.6 55 273-332 2-59 (94)
198 PF06506 PrpR_N: Propionate ca 58.1 38 0.00083 30.2 7.0 84 308-401 16-102 (176)
199 PLN02891 IMP cyclohydrolase 58.0 15 0.00032 38.6 4.7 50 269-331 20-69 (547)
200 PRK15138 aldehyde reductase; P 58.0 22 0.00048 36.2 6.0 64 271-336 30-96 (387)
201 PRK10423 transcriptional repre 55.5 1.1E+02 0.0024 29.5 10.4 107 246-354 26-142 (327)
202 cd07304 Chorismate_synthase Ch 55.4 42 0.00092 33.5 7.2 41 349-391 206-249 (344)
203 cd00861 ProRS_anticodon_short 53.7 34 0.00074 26.5 5.3 56 272-332 3-61 (94)
204 cd03522 MoeA_like MoeA_like. T 53.4 1.5E+02 0.0033 29.3 10.7 86 269-356 158-255 (312)
205 PF04392 ABC_sub_bind: ABC tra 53.2 36 0.00078 32.9 6.4 72 283-356 14-89 (294)
206 cd00578 L-fuc_L-ara-isomerases 53.0 1.3E+02 0.0029 31.1 11.0 113 285-414 24-150 (452)
207 COG2984 ABC-type uncharacteriz 51.9 39 0.00085 33.3 6.2 68 284-353 46-114 (322)
208 COG0337 AroB 3-dehydroquinate 51.7 62 0.0013 32.5 7.7 142 272-414 35-204 (360)
209 TIGR02990 ectoine_eutA ectoine 50.9 83 0.0018 29.8 8.2 61 271-333 121-190 (239)
210 KOG1057 Arp2/3 complex-interac 50.6 30 0.00064 37.9 5.5 126 16-149 177-321 (1018)
211 cd05014 SIS_Kpsf KpsF-like pro 50.3 1.1E+02 0.0025 25.0 8.3 51 301-356 50-100 (128)
212 TIGR03702 lip_kinase_YegS lipi 50.2 62 0.0013 31.4 7.5 73 282-358 12-90 (293)
213 KOG2799 Succinyl-CoA synthetas 49.0 51 0.0011 33.0 6.4 49 2-51 46-106 (434)
214 cd05005 SIS_PHI Hexulose-6-pho 48.0 2E+02 0.0043 25.4 11.0 79 275-358 37-130 (179)
215 COG0054 RibH Riboflavin syntha 47.8 71 0.0015 28.0 6.5 58 271-331 13-77 (152)
216 PF00532 Peripla_BP_1: Peripla 47.7 2.5E+02 0.0054 26.8 11.3 106 272-398 3-113 (279)
217 cd05013 SIS_RpiR RpiR-like pro 47.4 1.6E+02 0.0034 24.1 8.9 52 301-357 63-114 (139)
218 KOG0333 U5 snRNP-like RNA heli 47.2 3E+02 0.0065 29.3 11.8 101 234-356 490-594 (673)
219 PF03853 YjeF_N: YjeF-related 46.6 1.5E+02 0.0033 26.2 8.8 61 269-329 24-85 (169)
220 PRK14686 hypothetical protein; 46.3 66 0.0014 26.9 6.0 42 112-153 10-59 (119)
221 PRK12757 cell division protein 46.2 1.5E+02 0.0034 28.3 9.1 64 272-335 184-256 (256)
222 PRK04247 hypothetical protein; 45.9 2.3E+02 0.0049 26.9 10.1 38 128-175 158-196 (238)
223 TIGR03127 RuMP_HxlB 6-phospho 45.7 1.6E+02 0.0035 26.0 9.0 78 275-357 34-126 (179)
224 PRK11914 diacylglycerol kinase 45.7 82 0.0018 30.7 7.6 77 278-358 20-98 (306)
225 cd00858 GlyRS_anticodon GlyRS 45.3 74 0.0016 26.3 6.3 56 271-332 27-84 (121)
226 PF02006 DUF137: Protein of un 45.0 67 0.0015 28.6 6.0 71 285-357 19-98 (178)
227 PRK05382 chorismate synthase; 44.8 82 0.0018 31.7 7.3 41 349-391 204-247 (359)
228 cd00859 HisRS_anticodon HisRS 44.4 92 0.002 23.3 6.4 55 273-332 4-58 (91)
229 PRK13054 lipid kinase; Reviewe 43.7 83 0.0018 30.6 7.3 60 282-345 16-75 (300)
230 TIGR02417 fruct_sucro_rep D-fr 43.0 3.1E+02 0.0068 26.4 12.7 85 247-333 31-124 (327)
231 PF01264 Chorismate_synt: Chor 41.8 65 0.0014 32.2 6.1 41 349-391 204-247 (346)
232 cd07943 DRE_TIM_HOA 4-hydroxy- 41.0 93 0.002 29.7 7.0 51 279-329 107-158 (263)
233 PRK08862 short chain dehydroge 40.9 1.4E+02 0.003 27.5 8.1 84 238-335 7-93 (227)
234 PF06258 Mito_fiss_Elm1: Mitoc 40.9 3.6E+02 0.0079 26.5 13.2 105 270-386 146-259 (311)
235 PRK14674 hypothetical protein; 40.8 80 0.0017 27.0 5.8 41 113-153 11-59 (133)
236 PRK08195 4-hyroxy-2-oxovalerat 40.6 1E+02 0.0022 30.8 7.4 51 279-329 110-161 (337)
237 COG4029 Uncharacterized protei 39.9 88 0.0019 26.3 5.5 44 3-52 16-60 (142)
238 PLN02958 diacylglycerol kinase 39.5 3E+02 0.0066 28.9 11.1 102 237-346 82-188 (481)
239 COG2515 Acd 1-aminocyclopropan 39.1 2.5E+02 0.0054 27.7 9.3 77 319-399 139-228 (323)
240 KOG2158 Tubulin-tyrosine ligas 38.9 26 0.00056 36.1 2.8 38 7-45 216-253 (565)
241 TIGR00147 lipid kinase, YegS/R 38.6 78 0.0017 30.6 6.2 76 278-357 13-92 (293)
242 cd05017 SIS_PGI_PMI_1 The memb 38.5 2.2E+02 0.0047 23.2 9.2 55 301-358 46-100 (119)
243 PF10096 DUF2334: Uncharacteri 37.9 94 0.002 29.4 6.4 51 280-330 12-73 (243)
244 PF01380 SIS: SIS domain SIS d 37.9 1.7E+02 0.0036 23.9 7.4 29 302-330 57-85 (131)
245 PRK05867 short chain dehydroge 37.9 1.5E+02 0.0033 27.4 8.0 53 282-335 42-96 (253)
246 PRK10703 DNA-binding transcrip 37.8 2.5E+02 0.0054 27.2 9.8 86 246-333 29-123 (341)
247 PRK15482 transcriptional regul 37.8 3.7E+02 0.0081 25.7 10.9 51 302-357 186-236 (285)
248 PRK14680 hypothetical protein; 37.6 1.1E+02 0.0024 26.2 6.1 42 112-153 11-60 (134)
249 PF07302 AroM: AroM protein; 37.5 1.6E+02 0.0035 27.5 7.7 20 281-300 162-181 (221)
250 TIGR03217 4OH_2_O_val_ald 4-hy 37.5 1.2E+02 0.0027 30.1 7.5 51 279-329 109-160 (333)
251 PLN03049 pyridoxine (pyridoxam 37.4 5.1E+02 0.011 27.1 12.7 33 272-304 61-93 (462)
252 PF01297 TroA: Periplasmic sol 37.2 96 0.0021 29.2 6.5 65 292-356 163-230 (256)
253 TIGR02667 moaB_proteo molybden 37.0 2.9E+02 0.0063 24.3 9.7 100 271-378 5-111 (163)
254 KOG2884 26S proteasome regulat 36.5 3.6E+02 0.0078 25.2 10.0 74 244-321 85-161 (259)
255 cd07944 DRE_TIM_HOA_like 4-hyd 36.3 1.5E+02 0.0032 28.5 7.6 47 281-327 106-153 (266)
256 COG0532 InfB Translation initi 36.3 3.6E+02 0.0079 28.5 10.7 111 237-371 55-165 (509)
257 PRK10927 essential cell divisi 36.2 2.4E+02 0.0051 27.9 8.8 64 271-334 246-318 (319)
258 PRK14688 hypothetical protein; 36.1 1.2E+02 0.0025 25.5 6.0 41 113-153 12-60 (121)
259 COG0300 DltE Short-chain dehyd 36.1 4E+02 0.0088 25.6 11.1 85 236-334 6-93 (265)
260 PLN02754 chorismate synthase 36.1 1.2E+02 0.0026 31.1 7.0 42 348-391 238-282 (413)
261 COG0062 Uncharacterized conser 36.0 3.5E+02 0.0076 24.9 12.2 35 271-305 50-84 (203)
262 PRK12361 hypothetical protein; 36.0 2.6E+02 0.0055 29.9 10.1 76 278-358 254-331 (547)
263 PRK13055 putative lipid kinase 35.7 1E+02 0.0023 30.5 6.7 79 277-358 13-95 (334)
264 PF03681 UPF0150: Uncharacteri 35.4 39 0.00084 23.0 2.5 21 239-259 24-44 (48)
265 PF01729 QRPTase_C: Quinolinat 35.1 2.7E+02 0.0059 24.7 8.6 72 239-331 83-154 (169)
266 TIGR00252 conserved hypothetic 34.8 1.1E+02 0.0024 25.6 5.6 41 113-153 12-60 (119)
267 PRK14569 D-alanyl-alanine synt 34.8 56 0.0012 31.8 4.5 102 270-380 3-114 (296)
268 PRK12419 riboflavin synthase s 34.6 1.3E+02 0.0028 26.5 6.2 57 271-331 11-75 (158)
269 PRK13337 putative lipid kinase 34.5 1.3E+02 0.0028 29.3 7.0 76 278-357 13-92 (304)
270 PF03698 UPF0180: Uncharacteri 34.4 96 0.0021 24.1 4.7 54 286-354 10-63 (80)
271 PF02548 Pantoate_transf: Keto 34.3 1.3E+02 0.0029 28.8 6.7 99 244-356 91-205 (261)
272 PF02570 CbiC: Precorrin-8X me 34.0 64 0.0014 29.6 4.4 40 339-383 135-177 (198)
273 PRK12463 chorismate synthase; 33.9 1.6E+02 0.0035 30.0 7.5 63 312-391 200-267 (390)
274 PRK09526 lacI lac repressor; R 33.8 4.4E+02 0.0096 25.4 11.4 86 246-332 33-127 (342)
275 cd06305 PBP1_methylthioribose_ 33.7 1.3E+02 0.0029 27.9 6.8 9 321-329 76-84 (273)
276 COG4002 Predicted phosphotrans 33.7 1.3E+02 0.0029 27.8 6.2 81 242-338 113-204 (256)
277 PRK11175 universal stress prot 33.6 1.5E+02 0.0033 28.4 7.4 68 286-356 71-146 (305)
278 cd03129 GAT1_Peptidase_E_like 33.5 3E+02 0.0064 25.1 8.9 89 270-380 29-118 (210)
279 PRK14682 hypothetical protein; 33.4 1.5E+02 0.0032 24.7 6.2 42 112-153 9-59 (117)
280 PRK14684 hypothetical protein; 32.4 1.4E+02 0.003 25.1 5.8 42 112-153 11-60 (120)
281 cd03786 GT1_UDP-GlcNAc_2-Epime 32.2 1.5E+02 0.0033 29.0 7.3 83 273-355 31-119 (363)
282 cd01539 PBP1_GGBP Periplasmic 32.1 1.5E+02 0.0032 28.5 7.0 40 291-330 23-62 (303)
283 PF07065 D123: D123; InterPro 32.0 5E+02 0.011 25.5 12.6 136 7-155 75-243 (299)
284 PRK11557 putative DNA-binding 32.0 3.3E+02 0.0071 25.9 9.3 33 301-333 178-210 (278)
285 PRK10076 pyruvate formate lyas 32.0 3.6E+02 0.0078 24.9 9.1 80 243-330 110-211 (213)
286 cd03174 DRE_TIM_metallolyase D 31.9 1.9E+02 0.0041 27.2 7.6 46 282-327 113-161 (265)
287 COG0541 Ffh Signal recognition 31.9 6E+02 0.013 26.4 14.7 54 357-413 250-310 (451)
288 cd04795 SIS SIS domain. SIS (S 31.9 2.2E+02 0.0047 21.2 6.9 36 295-330 44-79 (87)
289 PF04174 CP_ATPgrasp_1: A circ 31.8 53 0.0012 32.7 3.7 25 129-153 70-94 (330)
290 PRK09492 treR trehalose repres 31.5 4.6E+02 0.01 24.9 13.5 84 247-332 33-125 (315)
291 TIGR00736 nifR3_rel_arch TIM-b 31.4 4.5E+02 0.0097 24.7 11.0 88 239-331 72-167 (231)
292 PF01866 Diphthamide_syn: Puta 31.1 2E+02 0.0043 28.2 7.7 97 218-333 169-268 (307)
293 PRK12497 hypothetical protein; 31.0 1.4E+02 0.003 24.9 5.6 42 112-153 11-60 (119)
294 PRK06455 riboflavin synthase; 31.0 3.7E+02 0.008 23.7 13.2 96 272-386 3-101 (155)
295 PF00763 THF_DHG_CYH: Tetrahyd 30.9 2.8E+02 0.0061 22.9 7.5 53 271-323 31-84 (117)
296 PLN02204 diacylglycerol kinase 30.7 5.5E+02 0.012 27.9 11.2 94 237-333 129-226 (601)
297 KOG1208 Dehydrogenases with di 30.4 1.6E+02 0.0035 29.0 6.9 81 238-335 37-124 (314)
298 TIGR02049 gshA_ferroox glutama 30.1 1.8E+02 0.004 29.3 7.0 44 20-64 260-312 (403)
299 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.1 3E+02 0.0065 22.3 8.0 33 301-333 49-81 (126)
300 PF13407 Peripla_BP_4: Peripla 30.1 2.3E+02 0.005 26.0 7.8 41 291-332 22-62 (257)
301 PRK10426 alpha-glucosidase; Pr 30.1 3.5E+02 0.0075 29.6 9.9 88 239-331 180-288 (635)
302 COG1619 LdcA Uncharacterized p 30.0 2.3E+02 0.005 28.0 7.8 84 270-353 10-108 (313)
303 COG1597 LCB5 Sphingosine kinas 29.8 1.7E+02 0.0036 28.7 6.9 78 277-358 13-93 (301)
304 COG2308 Uncharacterized conser 29.7 75 0.0016 32.7 4.4 60 3-64 352-413 (488)
305 PRK06139 short chain dehydroge 29.4 2.1E+02 0.0046 28.2 7.7 84 238-335 9-94 (330)
306 cd02911 arch_FMN Archeal FMN-b 29.3 3.8E+02 0.0082 25.1 9.0 90 239-333 77-173 (233)
307 TIGR02069 cyanophycinase cyano 29.2 4.1E+02 0.0089 25.2 9.2 30 270-299 28-58 (250)
308 PRK10310 PTS system galactitol 29.1 2.9E+02 0.0063 21.8 7.2 32 272-303 4-37 (94)
309 TIGR01481 ccpA catabolite cont 28.9 4.5E+02 0.0098 25.2 10.0 84 246-332 29-122 (329)
310 PF00106 adh_short: short chai 28.7 3.6E+02 0.0078 22.8 11.3 88 238-336 2-91 (167)
311 PLN03050 pyridoxine (pyridoxam 28.7 5.1E+02 0.011 24.5 10.3 32 272-303 62-93 (246)
312 TIGR00676 fadh2 5,10-methylene 28.5 4.4E+02 0.0096 25.2 9.5 53 282-334 42-95 (272)
313 PRK11337 DNA-binding transcrip 28.4 5.3E+02 0.012 24.7 10.7 52 302-358 191-242 (292)
314 cd00738 HGTP_anticodon HGTP an 28.2 2.5E+02 0.0054 21.2 6.5 56 273-333 4-62 (94)
315 KOG0725 Reductases with broad 28.0 2.5E+02 0.0053 27.0 7.6 83 240-336 12-100 (270)
316 cd04865 LigD_Pol_like_2 LigD_P 27.9 1.2E+02 0.0026 28.4 5.2 72 8-83 123-206 (228)
317 PRK07523 gluconate 5-dehydroge 27.8 3.1E+02 0.0067 25.3 8.2 84 238-335 12-97 (255)
318 TIGR00322 diphth2_R diphthamid 27.6 4.4E+02 0.0096 26.2 9.5 82 237-332 206-290 (332)
319 COG4221 Short-chain alcohol de 27.6 2.3E+02 0.005 26.9 7.0 83 235-336 7-92 (246)
320 PRK00861 putative lipid kinase 27.6 1.9E+02 0.0041 28.0 6.8 76 278-358 14-91 (300)
321 PRK08085 gluconate 5-dehydroge 27.0 3.3E+02 0.0072 25.0 8.3 53 282-335 42-96 (254)
322 cd01453 vWA_transcription_fact 27.0 2.8E+02 0.0061 24.7 7.4 90 244-345 86-177 (183)
323 TIGR00393 kpsF KpsF/GutQ famil 26.9 3.6E+02 0.0079 25.3 8.6 39 302-340 51-89 (268)
324 PF04122 CW_binding_2: Putativ 26.9 3E+02 0.0065 21.3 10.0 84 242-341 4-87 (92)
325 COG1737 RpiR Transcriptional r 26.8 3.6E+02 0.0078 25.9 8.6 37 293-329 172-208 (281)
326 COG0413 PanB Ketopantoate hydr 26.8 4.9E+02 0.011 25.0 8.9 101 242-356 88-204 (268)
327 KOG1014 17 beta-hydroxysteroid 26.6 2.3E+02 0.005 27.9 7.0 70 272-344 75-145 (312)
328 COG0300 DltE Short-chain dehyd 26.5 3.2E+02 0.007 26.3 8.0 59 270-334 5-64 (265)
329 cd01391 Periplasmic_Binding_Pr 26.4 1.8E+02 0.0039 26.1 6.3 39 292-330 25-63 (269)
330 TIGR02855 spore_yabG sporulati 26.4 2.6E+02 0.0055 27.1 7.1 49 270-321 104-152 (283)
331 PF04392 ABC_sub_bind: ABC tra 26.3 4.6E+02 0.0099 25.1 9.3 114 270-402 131-253 (294)
332 PF01055 Glyco_hydro_31: Glyco 26.3 4.5E+02 0.0098 26.9 9.8 87 240-330 2-101 (441)
333 PRK12360 4-hydroxy-3-methylbut 26.2 1.3E+02 0.0028 29.2 5.3 29 314-342 105-133 (281)
334 PF00682 HMGL-like: HMGL-like 26.1 5.1E+02 0.011 23.9 9.3 101 283-385 107-215 (237)
335 PRK15005 universal stress prot 26.0 2.9E+02 0.0062 22.8 7.0 25 308-334 92-116 (144)
336 TIGR00365 monothiol glutaredox 26.0 3.3E+02 0.0072 21.5 7.2 33 271-303 12-47 (97)
337 PRK07478 short chain dehydroge 26.0 2.9E+02 0.0063 25.4 7.7 84 238-335 8-93 (254)
338 PRK10892 D-arabinose 5-phospha 25.9 3.8E+02 0.0083 26.2 8.8 31 303-333 99-129 (326)
339 PF01522 Polysacc_deac_1: Poly 25.8 1.5E+02 0.0032 23.9 5.0 53 271-325 5-57 (123)
340 PRK14675 hypothetical protein; 25.7 2E+02 0.0044 24.2 5.7 41 113-153 14-62 (125)
341 cd03028 GRX_PICOT_like Glutare 25.7 3.2E+02 0.0069 21.1 7.1 36 271-306 8-46 (90)
342 PRK09432 metF 5,10-methylenete 25.5 6.4E+02 0.014 24.6 10.2 53 282-334 66-119 (296)
343 PF06490 FleQ: Flagellar regul 25.4 2.1E+02 0.0046 23.2 5.7 24 280-303 6-29 (109)
344 PRK07109 short chain dehydroge 25.3 3.2E+02 0.0069 26.9 8.1 84 238-335 10-95 (334)
345 PRK13059 putative lipid kinase 25.3 2.4E+02 0.0051 27.4 7.1 76 278-358 13-92 (295)
346 COG0205 PfkA 6-phosphofructoki 25.2 64 0.0014 32.4 3.0 28 365-396 153-181 (347)
347 cd04862 PaeLigD_Pol_like PaeLi 25.1 1.4E+02 0.0031 27.9 5.1 72 8-83 122-205 (227)
348 COG1181 DdlA D-alanine-D-alani 25.1 10 0.00022 37.6 -2.6 64 7-77 77-151 (317)
349 PF13793 Pribosyltran_N: N-ter 25.1 3.9E+02 0.0086 22.0 7.5 37 114-152 10-46 (116)
350 PLN02780 ketoreductase/ oxidor 25.0 2.6E+02 0.0056 27.4 7.4 86 238-336 55-143 (320)
351 cd07948 DRE_TIM_HCS Saccharomy 24.9 2.3E+02 0.005 27.1 6.7 76 242-323 103-181 (262)
352 PRK05954 precorrin-8X methylmu 24.8 4.2E+02 0.0091 24.4 8.0 40 339-383 137-179 (203)
353 COG0794 GutQ Predicted sugar p 24.7 5.6E+02 0.012 23.6 10.5 82 270-357 39-140 (202)
354 COG2086 FixA Electron transfer 24.7 5.6E+02 0.012 24.6 9.2 81 271-354 56-144 (260)
355 PRK05876 short chain dehydroge 24.6 3.2E+02 0.0069 25.9 7.8 83 239-335 9-93 (275)
356 PRK11303 DNA-binding transcrip 24.6 6.2E+02 0.014 24.2 12.7 86 246-333 31-125 (328)
357 KOG1205 Predicted dehydrogenas 24.4 1.7E+02 0.0037 28.5 5.7 15 323-337 89-103 (282)
358 PRK13057 putative lipid kinase 24.4 3.1E+02 0.0068 26.3 7.7 70 284-358 13-84 (287)
359 PRK10014 DNA-binding transcrip 24.3 6.5E+02 0.014 24.2 10.6 86 246-333 34-128 (342)
360 PRK11543 gutQ D-arabinose 5-ph 24.2 4.4E+02 0.0094 25.6 8.8 26 305-330 96-121 (321)
361 TIGR02778 ligD_pol DNA polymer 24.2 1.5E+02 0.0032 28.2 5.1 72 8-83 138-221 (245)
362 cd06310 PBP1_ABC_sugar_binding 24.0 1.7E+02 0.0038 27.1 5.8 18 310-327 42-59 (273)
363 PF11380 DUF3184: Protein of u 23.8 86 0.0019 33.3 3.7 96 296-397 426-531 (691)
364 KOG1752 Glutaredoxin and relat 23.7 3.8E+02 0.0082 21.8 6.8 44 277-320 18-61 (104)
365 cd06318 PBP1_ABC_sugar_binding 23.6 2.8E+02 0.0061 25.8 7.2 23 308-330 38-60 (282)
366 PRK13951 bifunctional shikimat 23.6 1.8E+02 0.0039 30.7 6.1 51 307-357 216-272 (488)
367 PRK07097 gluconate 5-dehydroge 23.6 4.2E+02 0.0091 24.6 8.4 84 238-335 12-97 (265)
368 cd06320 PBP1_allose_binding Pe 23.5 2.1E+02 0.0047 26.5 6.3 12 319-330 76-87 (275)
369 cd04861 LigD_Pol_like LigD_Pol 23.4 1.7E+02 0.0036 27.5 5.2 72 8-83 122-205 (227)
370 TIGR00222 panB 3-methyl-2-oxob 23.4 6.2E+02 0.014 24.3 9.2 101 241-356 87-203 (263)
371 cd04863 MtLigD_Pol_like MtLigD 23.4 1.7E+02 0.0038 27.5 5.3 73 8-84 126-210 (231)
372 PRK06830 diphosphate--fructose 23.3 1.5E+02 0.0034 30.7 5.5 93 303-395 150-268 (443)
373 PRK07063 short chain dehydroge 23.3 3.6E+02 0.0079 24.9 7.8 84 238-335 9-96 (260)
374 PF12745 HGTP_anticodon2: Anti 23.0 2.4E+02 0.0051 27.3 6.4 58 272-333 7-65 (273)
375 PF02954 HTH_8: Bacterial regu 23.0 56 0.0012 21.6 1.5 21 392-412 22-42 (42)
376 PF02021 UPF0102: Uncharacteri 23.0 3.2E+02 0.007 21.5 6.2 40 114-153 3-50 (93)
377 PF01488 Shikimate_DH: Shikima 22.9 4.1E+02 0.0088 22.3 7.3 74 270-357 12-85 (135)
378 cd02940 DHPD_FMN Dihydropyrimi 22.8 6.1E+02 0.013 24.6 9.4 41 282-322 111-164 (299)
379 PRK00061 ribH 6,7-dimethyl-8-r 22.8 1.5E+02 0.0032 26.1 4.5 59 270-331 12-77 (154)
380 cd01019 ZnuA Zinc binding prot 22.7 2.4E+02 0.0051 27.3 6.5 63 292-354 192-257 (286)
381 PRK14987 gluconate operon tran 22.7 6.9E+02 0.015 24.0 10.2 84 247-332 34-126 (331)
382 PTZ00445 p36-lilke protein; Pr 22.7 1.4E+02 0.003 27.8 4.4 52 279-331 24-97 (219)
383 PRK03298 hypothetical protein; 22.6 6.4E+02 0.014 23.6 10.0 35 129-174 134-169 (224)
384 cd01537 PBP1_Repressors_Sugar_ 22.5 5.7E+02 0.012 22.9 11.9 68 284-354 16-85 (264)
385 PTZ00286 6-phospho-1-fructokin 22.5 1.7E+02 0.0038 30.5 5.7 90 303-396 154-269 (459)
386 PRK14679 hypothetical protein; 22.5 1.8E+02 0.0038 24.7 4.8 41 113-153 21-69 (128)
387 PRK14685 hypothetical protein; 22.4 2.7E+02 0.0059 25.0 6.1 42 112-153 47-96 (177)
388 cd04740 DHOD_1B_like Dihydroor 22.3 5.5E+02 0.012 24.7 9.0 48 281-331 137-185 (296)
389 COG4087 Soluble P-type ATPase 22.2 5.1E+02 0.011 22.3 7.9 88 236-342 22-109 (152)
390 PRK08339 short chain dehydroge 22.2 3.6E+02 0.0077 25.3 7.5 54 281-335 40-95 (263)
391 cd01987 USP_OKCHK USP domain i 22.1 4.1E+02 0.009 21.2 9.0 88 244-346 10-106 (124)
392 PLN02424 ketopantoate hydroxym 22.1 4.6E+02 0.0099 26.2 8.2 102 242-356 108-225 (332)
393 TIGR03884 sel_bind_Methan sele 22.0 1.5E+02 0.0032 22.6 3.7 26 236-261 17-42 (74)
394 PRK11041 DNA-binding transcrip 22.0 6.3E+02 0.014 23.8 9.4 84 247-332 6-98 (309)
395 cd06557 KPHMT-like Ketopantoat 22.0 4.6E+02 0.0099 25.1 8.0 100 242-356 85-201 (254)
396 TIGR01352 tonB_Cterm TonB fami 21.6 3.2E+02 0.0069 19.7 6.1 28 121-148 3-30 (74)
397 PF03544 TonB_C: Gram-negative 21.6 1.6E+02 0.0034 21.7 4.0 26 123-148 11-36 (79)
398 cd00763 Bacterial_PFK Phosphof 21.6 2.7E+02 0.0058 27.6 6.6 86 308-396 75-178 (317)
399 PRK09019 translation initiatio 21.6 4.4E+02 0.0096 21.7 6.7 53 273-330 47-105 (108)
400 cd07948 DRE_TIM_HCS Saccharomy 21.5 4.2E+02 0.0091 25.3 7.8 100 283-385 111-218 (262)
401 PRK15456 universal stress prot 21.4 3.4E+02 0.0074 22.5 6.6 34 296-333 80-113 (142)
402 TIGR02482 PFKA_ATP 6-phosphofr 21.4 2.2E+02 0.0047 28.0 5.9 55 283-341 77-131 (301)
403 PRK13394 3-hydroxybutyrate deh 21.3 4.5E+02 0.0098 24.1 8.0 84 238-335 9-94 (262)
404 cd01542 PBP1_TreR_like Ligand- 21.2 5.5E+02 0.012 23.3 8.6 46 285-332 17-62 (259)
405 PRK10727 DNA-binding transcrip 21.2 7.5E+02 0.016 23.9 10.5 86 246-333 29-123 (343)
406 TIGR00677 fadh2_euk methylenet 21.2 6.2E+02 0.013 24.5 9.0 54 281-334 42-96 (281)
407 PRK12939 short chain dehydroge 21.1 4.3E+02 0.0094 24.0 7.8 84 238-335 9-94 (250)
408 COG0695 GrxC Glutaredoxin and 21.1 3.8E+02 0.0082 20.3 6.4 40 279-319 7-46 (80)
409 cd01989 STK_N The N-terminal d 21.0 4.8E+02 0.01 21.5 7.9 56 285-343 66-121 (146)
410 cd02978 KaiB_like KaiB-like fa 21.0 2.7E+02 0.0058 21.1 5.0 41 274-314 6-48 (72)
411 cd00293 USP_Like Usp: Universa 21.0 4.1E+02 0.0089 20.7 7.9 46 295-344 67-112 (130)
412 PRK14683 hypothetical protein; 20.9 1.8E+02 0.0038 24.5 4.4 39 113-151 19-65 (122)
413 cd06321 PBP1_ABC_sugar_binding 20.9 3.2E+02 0.0069 25.3 6.9 15 317-331 74-88 (271)
414 PRK06124 gluconate 5-dehydroge 20.7 4.1E+02 0.0089 24.4 7.6 52 283-335 45-98 (256)
415 TIGR00114 lumazine-synth 6,7-d 20.7 2.4E+02 0.0051 24.3 5.3 43 286-331 19-65 (138)
416 PRK08277 D-mannonate oxidoredu 20.6 4.3E+02 0.0094 24.7 7.8 84 238-335 12-97 (278)
417 cd06273 PBP1_GntR_like_1 This 20.4 5.4E+02 0.012 23.5 8.4 18 281-298 39-56 (268)
418 COG0757 AroQ 3-dehydroquinate 20.4 2.1E+02 0.0046 24.6 4.7 77 277-357 22-101 (146)
419 COG0313 Predicted methyltransf 20.4 7.1E+02 0.015 24.1 8.9 110 245-400 16-127 (275)
420 PRK07062 short chain dehydroge 20.3 4.3E+02 0.0093 24.5 7.7 27 309-335 69-97 (265)
421 cd01080 NAD_bind_m-THF_DH_Cycl 20.3 6.1E+02 0.013 22.4 8.1 54 270-336 44-98 (168)
422 COG1598 Predicted nuclease of 20.2 81 0.0018 23.8 2.1 20 239-258 26-45 (73)
423 PF04056 Ssl1: Ssl1-like; Int 20.2 3.2E+02 0.0069 25.0 6.3 55 244-303 80-136 (193)
424 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.2 5.3E+02 0.011 24.7 8.3 50 279-328 113-165 (275)
425 PRK05282 (alpha)-aspartyl dipe 20.2 2.7E+02 0.0059 26.2 6.1 64 270-343 31-97 (233)
426 smart00115 CASc Caspase, inter 20.1 7.2E+02 0.016 23.2 9.0 34 285-321 31-64 (241)
No 1
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=4.7e-83 Score=671.59 Aligned_cols=434 Identities=76% Similarity=1.190 Sum_probs=391.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~ 82 (438)
+++.+++.++++++|||+||||..+|++|+|+++++|++||+++++.+..++..++||+||++.+|+++.++++.+|++.
T Consensus 142 v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~r~~~G~i~ 221 (577)
T PLN02948 142 IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVARSRDGSTR 221 (577)
T ss_pred eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEEECCCCCEE
Confidence 56888999999999999999998887789999999999999999988765556699999999889999999999889988
Q ss_pred EEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeec
Q 013661 83 CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESC 162 (438)
Q Consensus 83 ~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~ 162 (438)
.+|..|+.+.++.+...+.|+.+++++++++++++.+++++|++.|++++|||++++|++||+||||||+++||++..++
T Consensus 222 ~~p~~E~~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~ 301 (577)
T PLN02948 222 CYPVVETIHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEAC 301 (577)
T ss_pred EecCcccEEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecc
Confidence 89988888888877777789999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEEEE
Q 013661 163 YTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV 242 (438)
Q Consensus 163 ~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~~ 242 (438)
++|+|++|+|+++|+|++........++|.++++...+...+.+...+++..+..|+|+++||++++.++++++|||++.
T Consensus 302 ~~s~fe~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~~~v~~ygk~~~r~~rkmGhV~~~ 381 (577)
T PLN02948 302 YTSQFEQHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKMGHITVV 381 (577)
T ss_pred cCCHHHHHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHhhCCCCEEEEecCCCCCCCCeeEEEEEe
Confidence 99999999999999999987665555788999886432211221111444556789999999999888889999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCc-cccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 243 GSSMGLVESRLNSLLKEDSSDC-QFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 243 G~~~~eA~~ka~~a~~~i~~~~-~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
|+|.+++..+++.+++.+.... ..++..+.|+|+|||+||+++++++++.|++||++++++|+|+||+|+++.+|++++
T Consensus 382 g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~ 461 (577)
T PLN02948 382 GPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSA 461 (577)
T ss_pred cCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHH
Confidence 9999999999999988654421 122235789999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCC
Q 013661 322 HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG 401 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~ 401 (438)
+++|++|+|++|||++||||+++++|++||||||++.+.++|+|+||||+|||+|+||+||+|||+.|||++|+|||+++
T Consensus 462 ~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~ 541 (577)
T PLN02948 462 HSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGAS 541 (577)
T ss_pred HHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 013661 402 DADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYL 436 (438)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
|+++|+||++||.++..++.+++++|++.+|++|+
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (577)
T PLN02948 542 DPDLLDKMEAYQEDMRDMVLEKAEKLEELGWEEYL 576 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Confidence 99999999999999999999999999988899885
No 2
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-51 Score=342.29 Aligned_cols=157 Identities=64% Similarity=0.993 Sum_probs=153.7
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCce
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPV 351 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pV 351 (438)
.|+|||||+|||+.++++++.|++||++|+++|+||||||+++.+|.++++++|++|+|++||+++|||||++++|.+||
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPV 83 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPV 83 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013661 352 IGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428 (438)
Q Consensus 352 i~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (438)
||||+++..++|+|+|+|++|||+||||+||+|+++.|||++|+|||+++|+.+++||++||++++++|++++++++
T Consensus 84 iGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~~~~~V~~~~~~l~ 160 (162)
T COG0041 84 IGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREAQTEEVLEDDEELE 160 (162)
T ss_pred EeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887765
No 3
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=6e-48 Score=332.15 Aligned_cols=155 Identities=68% Similarity=1.053 Sum_probs=150.5
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceE
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVI 352 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi 352 (438)
|+|+|||+||+++++++.+.|++||++|+++|+|+||+|+++.+|+++++++|++|||++||+++||||+++++|++|||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI 80 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013661 353 GVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 353 ~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 427 (438)
|||++.+.++|+|+|||++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||.++++++.+++++|
T Consensus 81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~~~~~v~~~~~~l 155 (156)
T TIGR01162 81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKL 155 (156)
T ss_pred EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999988789999999999999999999999999999999999999999999999999999999999998877765
No 4
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=3e-44 Score=309.56 Aligned_cols=150 Identities=56% Similarity=0.894 Sum_probs=132.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 350 (438)
++|+|+|||+||+++++++.+.|+++|++++++|+|+||+|+++.+|+++++++|++|+|++||+++||||+++++|++|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P 80 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP 80 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence 46899999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred eEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 013661 351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDV 420 (438)
Q Consensus 351 Vi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~ 420 (438)
|||||++++.++|+|+|+|++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||.+++++|
T Consensus 81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~~~~~v 150 (150)
T PF00731_consen 81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREKMKEKV 150 (150)
T ss_dssp EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Confidence 9999999888999999999999999999999999999999999999999999999999999999998764
No 5
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=2.2e-41 Score=378.06 Aligned_cols=370 Identities=16% Similarity=0.172 Sum_probs=289.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+++.++++++|||+||||++++ ||+||.+|+|.+||+++++.+.. ..+.++||+||++++|+++++++|.+|
T Consensus 722 ~v~s~eea~~~a~~iGyPvvVKP~~g~-gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G 800 (1102)
T PLN02735 722 IARSEADALAIAKRIGYPVVVRPSYVL-GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEG 800 (1102)
T ss_pred EeCCHHHHHHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEECCCC
Confidence 357889999999999999999998876 89999999999999999987642 223599999998779999999999889
Q ss_pred eEEEEeeeeeEEec----CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
+++.+++.++.... |+....+++..+++++.+++++++.+++++|+++|++++||+++++|++||+|+|||++++.
T Consensus 801 ~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~t~ 880 (1102)
T PLN02735 801 NVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTV 880 (1102)
T ss_pred CEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCccH
Confidence 98888888887654 33333333346999999999999999999999999999999998788899999999999877
Q ss_pred CceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCce
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 235 (438)
+++.+++|+|+.+.+++.++|.+|.+....... . ....+.+-+ .|+ +.+++++|..+ + ++ |++
T Consensus 881 p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~-~-~~~~~vk~~--vf~--------~~~~~~~d~~l-g-~e---mkS 943 (1102)
T PLN02735 881 PFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEV-I-PAHVSVKEA--VLP--------FDKFQGCDVLL-G-PE---MRS 943 (1102)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCChhhcCCCccc-c-cCeEEEEec--cCC--------hhhCCCCCCCc-c-eE---EEe
Confidence 788889999999999999999998765321100 0 001111111 122 34567777766 2 55 677
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHH
Q 013661 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 ~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~ 315 (438)
+|+++++|.|++||+.|+..+.+. .. | +.+.+ +++.++.|+..+.++++.|.++||++.+| .+ |.
T Consensus 944 tGe~~g~~~~~~~a~~ka~~~~~~-~~----p-~~g~v-liSv~d~~K~~~~~~a~~L~~lG~~i~aT----~G----Ta 1008 (1102)
T PLN02735 944 TGEVMGIDYEFSKAFAKAQIAAGQ-RL----P-LSGTV-FISLNDLTKPHLVPIARGFLELGFRIVST----SG----TA 1008 (1102)
T ss_pred CCceeeecCCHHHHHHHHHhcCCC-cc----C-CCCeE-EEEEecCCchhHHHHHHHHHHCCCEEEEc----cH----HH
Confidence 999999999999999999887653 21 2 34554 88999999999999999999999999999 66 88
Q ss_pred HhHhhhhhcCCeEEEEec--cccCcccccccCCCCCceEeccCCCC--CCCChhhHHHhhhCCCCCceEEEEeCCcchHH
Q 013661 316 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVRAS--ALDGLDSLLSIVQMPRGVPVATVAINNATNAG 391 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~~~--~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa 391 (438)
+|+ ++.|++|..+.. .+.+++.++|..+....|||+|.... ..||+. +|+.++..||||.|-- +++.|.
T Consensus 1009 ~~L---~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~~~~~~~~~~d~~~--iRr~a~~~~ip~~t~~--~~a~~~ 1081 (1102)
T PLN02735 1009 HFL---ELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALDQKDGRQ--LRRMALAYKVPIITTV--AGALAT 1081 (1102)
T ss_pred HHH---HHCCCceEEEeeccCCCccHHHHHHcCCeEEEEECCCCccccccccHH--HHHHHHHcCCCEEecH--HHHHHH
Confidence 888 567999776544 45678999999999999999998432 457877 9999999999999532 255566
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 013661 392 LLAVRMLGFGDADLRARMQQY 412 (438)
Q Consensus 392 ~~a~~il~~~~~~~~~~l~~~ 412 (438)
+.|++.+......+ ..|++|
T Consensus 1082 ~~~~~~~~~~~~~~-~~~~~~ 1101 (1102)
T PLN02735 1082 AQAVKSLKECPIEM-IALQDF 1101 (1102)
T ss_pred HHHHHhhcCCCceE-eEhHHh
Confidence 66654443332344 444444
No 6
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=1.4e-39 Score=328.13 Aligned_cols=247 Identities=41% Similarity=0.711 Sum_probs=222.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.++|.+++.++++++|||+|+||..+|++|+|+++++|.+|++++++.+... .++||+||++++|+++.++++.+|++
T Consensus 120 ~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~--~~ivEe~I~~~~E~sv~~~~~~~G~~ 197 (372)
T PRK06019 120 VVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSV--PCILEEFVPFEREVSVIVARGRDGEV 197 (372)
T ss_pred EeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCC--CEEEEecCCCCeEEEEEEEECCCCCE
Confidence 4678999999999999999999988777899999999999999999987544 49999999977999999999989999
Q ss_pred EEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013661 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~ 161 (438)
..+++.++.+.+|.+..++.|+.+++++.+++++++.+++++||+.|++++||+++++|++||+|+|||+++++|++..+
T Consensus 198 ~~~p~~e~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~ 277 (372)
T PRK06019 198 VFYPLVENVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEA 277 (372)
T ss_pred EEeCCcccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhh
Confidence 99999999988898888888999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEEE
Q 013661 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~ 241 (438)
+++|+|++|+|+++|+|++.... ..+++|.++++... ... .+..++..|+|+++||++++.++++++|||.+
T Consensus 278 ~~~sqf~~~ira~~Glpl~~~~~-~~~~~m~nilg~~~---~~~----~~~~~~~~~~~~~~~ygk~~~~~~rk~Ghv~~ 349 (372)
T PRK06019 278 CSTSQFEQHLRAILGLPLGTTRL-LSPAVMVNLLGDDW---LEP----RWDALLALPGAHLHLYGKAEARPGRKMGHVTV 349 (372)
T ss_pred cCccHHHHHHHHHcCCCCCCccc-cCceEEEEEECchh---hhh----HHHHHhhCCCCEEEECCCCCCCCCCceEEEEe
Confidence 99999999999999999996543 34589999998631 112 45556778999999999989999999999999
Q ss_pred EcCCHHHHHHHHHHHhh
Q 013661 242 VGSSMGLVESRLNSLLK 258 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~ 258 (438)
.|+|.+++.++++.++.
T Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 350 LGDDVEALLAKLEALAP 366 (372)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 99999999999998876
No 7
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.1e-39 Score=365.74 Aligned_cols=357 Identities=17% Similarity=0.199 Sum_probs=281.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.++|.+|+.++++++|||+||||++++ ||+||.+++|++||+++++.+......++||+||+| .|+++++++|++ .+
T Consensus 690 ~~~s~ee~~~~~~~igyPvVVKP~~~~-Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v 766 (1068)
T PRK12815 690 TATDEEEAFAFAKRIGYPVLIRPSYVI-GGQGMAVVYDEPALEAYLAENASQLYPILIDQFIDG-KEYEVDAISDGE-DV 766 (1068)
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecC-ceEEEEEEEcCC-ce
Confidence 367899999999999999999998876 899999999999999999887333455999999986 899999999754 55
Q ss_pred EEEeeeeeEEec----CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013661 82 LCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 82 ~~~~~~e~~~~~----g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~ 157 (438)
+..++.++.... |+.....+|..++++..+++++++.+++++|+++|++|+||++++ |.+|++|||||++++.++
T Consensus 767 ~i~~i~e~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~-~~~yviEiNpR~s~t~~~ 845 (1068)
T PRK12815 767 TIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN-DEIYVLEVNPRASRTVPF 845 (1068)
T ss_pred EEeeEEEEeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC-CcEEEEEEeCCCCccHHH
Confidence 566677777654 343444567779999999999999999999999999999999984 569999999999988777
Q ss_pred eeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeE
Q 013661 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G 237 (438)
...++|+|+++.+++.++|.++.+............++..+.| .|+ +.++++++..+ + ++ |+++|
T Consensus 846 ~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p--~f~--------f~~~~~~~~~l-g-~~---m~stG 910 (1068)
T PRK12815 846 VSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMP--VFS--------YLKYPGVDNTL-G-PE---MKSTG 910 (1068)
T ss_pred HHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEec--cCC--------hhHcccCCCcc-C-Cc---ceEcc
Confidence 8889999999999999999998765321100000001111111 122 34567777665 3 55 67899
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
+||+.|.|++||+.|+..+.+. .. | +.+.| +++.++.|++.+.++++.|.++||++.+| .+ |++|
T Consensus 911 e~~~~~~~~~~a~~k~~~~~~~-~~----p-~~~~~-~~~~~~~~k~~~~~~~~~~~~~g~~~~at----~g----t~~~ 975 (1068)
T PRK12815 911 EVMGIDKDLEEALYKGYEASDL-HI----P-SYGTI-FISVRDEDKPEVTKLARRFAQLGFKLLAT----EG----TANW 975 (1068)
T ss_pred eeEeccCCHHHHHHHHHHhcCC-CC----C-CCCeE-EEEecccchHHHHHHHHHHHHCCCEEEEc----cH----HHHH
Confidence 9999999999999999988863 21 2 34555 89999999999999999999999999999 66 8888
Q ss_pred HhhhhhcCCeEEEEec--cccCcccccccCCCCCceEeccCC-CCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHH
Q 013661 318 ASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLA 394 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a 394 (438)
+ ++.|+++..+.+ .+.+++.++|..+....|||+|.+ ....||+. +|+.++..||||.|-- +++.|.+.|
T Consensus 976 l---~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~~~~~~~~~~~~--irr~a~~~~ip~~t~~--~~a~~~~~~ 1048 (1068)
T PRK12815 976 L---AEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIK--IRDEALSTHIPVFTEL--ETAQAFLQV 1048 (1068)
T ss_pred H---HhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECCCCcccccccHH--HHHHHHHcCCCEEecH--HHHHHHHHH
Confidence 8 577999876644 556789999999999999999984 23467776 9999999999999532 255566666
Q ss_pred HHHHc
Q 013661 395 VRMLG 399 (438)
Q Consensus 395 ~~il~ 399 (438)
++.+.
T Consensus 1049 ~~~~~ 1053 (1068)
T PRK12815 1049 LESLA 1053 (1068)
T ss_pred HHhcC
Confidence 54444
No 8
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=307.00 Aligned_cols=247 Identities=39% Similarity=0.682 Sum_probs=221.5
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.++|.+|+.++++++|||+|+|.+.+||.|+|.+++++.+++........... ..++|+||++.+|+|+.+.++.+|++
T Consensus 119 ~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~~~-~~vlE~fV~F~~EiSvi~aR~~~G~~ 197 (375)
T COG0026 119 VVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAEGG-VPVLEEFVPFEREISVIVARSNDGEV 197 (375)
T ss_pred EeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhccC-ceeEEeecccceEEEEEEEEcCCCCE
Confidence 46889999999999999999999999999999999999999988665543322 24999999999999999999999999
Q ss_pred EEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013661 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~ 161 (438)
.+||..|+++++|.+..++.|+.+++.++++.++++.+++++|+|.|++.||||+++||+++++|+.||+++|||||+.+
T Consensus 198 ~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~g 277 (375)
T COG0026 198 AFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDG 277 (375)
T ss_pred EEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEEE
Q 013661 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~ 241 (438)
|.+++|++|+|+++|+|++.+.. ..+++|.++++...+.. .+.+++..|++++|||++.+.++++++|||..
T Consensus 278 c~~SQFEqHlRAv~glPLg~~~~-~~p~vMvNlLG~~~~~~-------~~~~~l~~p~~~lH~YGK~e~R~gRKmGHvn~ 349 (375)
T COG0026 278 CETSQFEQHLRAVLGLPLGSTTL-LSPSVMVNLLGDDVPPD-------DVKAVLALPGAHLHWYGKAEARPGRKMGHVNV 349 (375)
T ss_pred ccccHHHHHHHHHhCCCCCCccc-cCceEEEEecCCCCchh-------hhHHHHhCCCCEEEEecCccCCCCCeeeeEEe
Confidence 99999999999999999999654 45689999998743210 24567889999999999988999999999999
Q ss_pred EcCCHHHHHHHHHHHh
Q 013661 242 VGSSMGLVESRLNSLL 257 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~ 257 (438)
.++|.+++.+++....
T Consensus 350 ~~~~~~~~~~~~~~l~ 365 (375)
T COG0026 350 LGSDSDELEQLAALLP 365 (375)
T ss_pred ecCCHHHHHHHHHhhh
Confidence 9999777776655443
No 9
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=7.4e-38 Score=350.85 Aligned_cols=340 Identities=17% Similarity=0.237 Sum_probs=273.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+|+.++++++|||+||||++++ ||+||.+|+|++||.++++.+. .....++|||||++++|++++++++ +|
T Consensus 689 ~v~s~ee~~~~~~~igyPvIVKP~~~~-Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d-~g 766 (1050)
T TIGR01369 689 TATSVEEAVEFASEIGYPVLVRPSYVL-GGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSD-GE 766 (1050)
T ss_pred EECCHHHHHHHHHhcCCCEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEe-CC
Confidence 467899999999999999999998875 8999999999999999998763 2224499999999669999999987 56
Q ss_pred eEEEEeeeeeEEec----CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
+++..++.+++... |+.....+|..++++..+++++++.+++++||++|++|+||+++ +|.+||||+|||++++.
T Consensus 767 ~v~i~~i~e~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~-~~~~yvIEvNpR~s~t~ 845 (1050)
T TIGR01369 767 EVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK-DGEVYVIEVNPRASRTV 845 (1050)
T ss_pred EEEEEEEEEeecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE-CCeEEEEEEeCCCCchH
Confidence 78887877777654 33333344556999999999999999999999999999999998 46799999999999876
Q ss_pred CceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCce
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 235 (438)
+++..++|+|+.+.+++.++|.++.+........ ...++.+.+ .|+ +.++++++..+ + ++ |++
T Consensus 846 p~vs~atGi~l~~~~~~~~lG~~l~~~~~~~~~~--~~~~~vK~p--~f~--------~~~~~~~d~~l-g-~e---mks 908 (1050)
T TIGR01369 846 PFVSKATGVPLIKLATRVMLGKKLEELGVGKEKE--PKYVAVKEP--VFS--------FSKLAGVDPVL-G-PE---MKS 908 (1050)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCccccccccCCC--CCeEEEEec--cCC--------hhhcCCCCCcC-C-ce---eEe
Confidence 6778889999999999999999987653211000 011111111 122 34577777765 3 56 677
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHH
Q 013661 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 ~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~ 315 (438)
+|+||+.|.|++||+.|+..+.+. .. | +++.+ ++++++.|++.+.++++.|.++||++++| .+ |+
T Consensus 909 tge~~~~g~~~~~a~~ka~~~~~~-~~----p-~~~~~-~~~~~~~~k~~~~~~~~~l~~~g~~~~at----~g----ta 973 (1050)
T TIGR01369 909 TGEVMGIGRDLAEAFLKAQLSSGN-RI----P-KKGSV-LLSVRDKDKEELLDLARKLAEKGYKLYAT----EG----TA 973 (1050)
T ss_pred cCceEecCCCHHHHHHHHHHhCCC-Cc----C-CCCeE-EEEeccCchHHHHHHHHHHHHCCCEEEEe----ch----HH
Confidence 999999999999999999988862 22 2 34554 89999999999999999999999999999 66 88
Q ss_pred HhHhhhhhcCCeEEEEec--cccCcccccccCCCCCceEeccCCC--CCCCChhhHHHhhhCCCCCceEE
Q 013661 316 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVRA--SALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~~--~~~~g~~~l~s~~~~~~g~p~~t 381 (438)
+|+ +++|++|..+.+ .+.+++.++|.......|||+|..+ ...||+. +|+.++..||||.|
T Consensus 974 ~~l---~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~~~~~~~~~~g~~--iRr~Ai~~~ip~~t 1038 (1050)
T TIGR01369 974 KFL---GEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYK--IRREALDYGVPLIT 1038 (1050)
T ss_pred HHH---HHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECCCCCcccccccHH--HHHHHHHcCCCEEe
Confidence 888 567998776544 4567899999999999999999842 3456777 99999999999996
No 10
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=5.4e-38 Score=353.12 Aligned_cols=354 Identities=17% Similarity=0.237 Sum_probs=277.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+.+.+++.++++++||||||||++++ ||+||.+++|++||.++++.+. .....++||+||+|.+|+++++++|++
T Consensus 689 ~~~s~ee~~~~~~~igyPvvVKP~~~~-Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~- 766 (1066)
T PRK05294 689 TATSVEEALEVAEEIGYPVLVRPSYVL-GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGE- 766 (1066)
T ss_pred EECCHHHHHHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCC-
Confidence 367889999999999999999998865 8999999999999999988753 223459999999985699999998754
Q ss_pred eEEEEeeeeeEEec----CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
.+...++.+++... |+....++|..++++..+++++++.+++++||+.|++|+||+++ +|.+||+|||||++++.
T Consensus 767 ~v~i~~i~e~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~-~~~~yViEiNpR~s~t~ 845 (1066)
T PRK05294 767 DVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK-DDEVYVIEVNPRASRTV 845 (1066)
T ss_pred eEEEeeeEEeeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE-CCeEEEEEEecCCCccH
Confidence 46666666766544 44444456677999999999999999999999999999999998 56799999999999877
Q ss_pred CceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCce
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 235 (438)
++...++|+|+.+..++.++|.++.+..... ...-..++.+.|. |+ ..++++++..+ + ++ |++
T Consensus 846 ~~~s~atGi~~~~~~~~~~lG~~l~~~~~~~--~~~~~~~~vk~p~--fs--------~~~~~~~~~~l-g-~~---m~s 908 (1066)
T PRK05294 846 PFVSKATGVPLAKIAARVMLGKKLAELGYTK--GLIPPYVAVKEAV--FP--------FNKFPGVDPLL-G-PE---MKS 908 (1066)
T ss_pred HHHHHHhCccHHHHHHHHHcCCChhhcCCCc--cCCCCceEEEecc--CC--------hhhccCCCCcc-C-ce---eee
Confidence 7778889999999999999999988753211 0000011111111 21 24567777766 3 56 677
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHH
Q 013661 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 ~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~ 315 (438)
+|+|++.|.|++||+.|+..+.+. .. | +++.+ +++.++.|+..+.++++.|.++||++.+| .+ |.
T Consensus 909 tge~~~~~~~~~~a~~k~~~~~~~-~~----p-~~~~~-lisv~~~dK~~l~~~a~~l~~~G~~i~aT----~g----T~ 973 (1066)
T PRK05294 909 TGEVMGIDRTFGEAFAKAQLAAGN-RL----P-TSGTV-FLSVRDRDKEEVVELAKRLLELGFKILAT----SG----TA 973 (1066)
T ss_pred cCceeecCCCHHHHHHHHHHhccc-cc----C-CCCeE-EEEeccccHHHHHHHHHHHHHcCCEEEEc----cH----HH
Confidence 999999999999999999988863 21 2 34554 88889999999999999999999999999 66 88
Q ss_pred HhHhhhhhcCCeEEEEec--cccCcccccccCCCCCceEeccCC-CCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHH
Q 013661 316 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINNATNAGL 392 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~ 392 (438)
+|+ ++.|++|..+.. ...+++-++|.......|||+|.. ....+|+. +|+.++..||||.|-. +.+.|.+
T Consensus 974 ~~l---~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~~~~~~~~g~~--iRr~Av~~~ip~~T~~--~~a~~~v 1046 (1066)
T PRK05294 974 KFL---REAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFS--IRRAALEYKVPYITTL--AGARAAV 1046 (1066)
T ss_pred HHH---HHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCCCcccccccHH--HHHHHHHcCCCEEecH--HHHHHHH
Confidence 888 567999776543 455789999999999999999985 23456776 9999999999999632 2445555
Q ss_pred HHHHH
Q 013661 393 LAVRM 397 (438)
Q Consensus 393 ~a~~i 397 (438)
.|+..
T Consensus 1047 ~al~~ 1051 (1066)
T PRK05294 1047 KAIEA 1051 (1066)
T ss_pred HHHHh
Confidence 55433
No 11
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=1.5e-36 Score=304.36 Aligned_cols=235 Identities=43% Similarity=0.759 Sum_probs=206.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.+++.+++.++++++|||+|+||..++++|+|+++++|.+|+.++++.+.... +|+||||++++|+++.++++.+|++
T Consensus 118 ~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~--~lvEe~I~~~~E~sv~~~~~~~G~~ 195 (352)
T TIGR01161 118 VIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRE--CIVEEFVPFERELSVIVARSADGET 195 (352)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCc--EEEEecCCCCeEEEEEEEEcCCCCE
Confidence 46788999999999999999999887668999999999999999998875444 9999999977999999998888999
Q ss_pred EEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013661 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~ 161 (438)
..+++.++.++.|....++.|+.+++++.+++++++.+++++||+.|++++||+++++|++||+|+|||++++++++..+
T Consensus 196 ~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~ 275 (352)
T TIGR01161 196 AFYPVVENIHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDG 275 (352)
T ss_pred EEECCcccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhh
Confidence 89998888888888777788999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEEE
Q 013661 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~ 241 (438)
++.++|++|+|+++|+|++...... +++|.++++.. . ...+ .+..++..|+|+++||++++.++++++|||.+
T Consensus 276 ~~~s~f~~~~ra~~g~~l~~~~~~~-~~~m~n~~~~~--~-~~~~---~~~~~~~~~~~~~~~y~k~~~~~~rk~Ghi~~ 348 (352)
T TIGR01161 276 CSTSQFEQHLRAILGLPLGSTELLL-PSVMVNLLGTE--D-DVIP---LWEEILALPGAKLHWYGKAEVRPGRKVGHVNL 348 (352)
T ss_pred ccccHHHHHHHHHcCCCCCCccccC-CEEEEEEecCc--c-chHH---HHHHHHhCCCCEEEECCCCCCCCCCcceEEEe
Confidence 9999999999999999999875433 38899999863 0 1111 44455678999999999988899999999999
Q ss_pred EcCC
Q 013661 242 VGSS 245 (438)
Q Consensus 242 ~G~~ 245 (438)
.|+|
T Consensus 349 ~~~~ 352 (352)
T TIGR01161 349 VGSD 352 (352)
T ss_pred ecCC
Confidence 9875
No 12
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=1.1e-34 Score=294.00 Aligned_cols=253 Identities=26% Similarity=0.396 Sum_probs=213.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.+++.+++.++++++|||+|+||..++ +|+|+++|+|.+||.++++.+.. ..+.+||||||+++.|+++.++++.
T Consensus 121 ~~~~~~~~~~~~~~~g~P~VvKP~~g~-~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~ 199 (380)
T TIGR01142 121 FADSLDELREAVEKIGYPCVVKPVMSS-SGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHV 199 (380)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEECCCc-CCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcC
Confidence 367889999999999999999998765 99999999999999999987632 2346999999997789999999887
Q ss_pred CCeEEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013661 78 DKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~ 157 (438)
+|++..++..++....+....++.|+.++++..+++.+++.+++++||+.|++|+||+++++ .+||+|||||+++++++
T Consensus 200 ~g~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR~~~~~~~ 278 (380)
T TIGR01142 200 DGNTTFCAPIGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPRPHDTGMV 278 (380)
T ss_pred CCCEEEecCcceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecCCCCCceE
Confidence 88776666566666677777777899999999999999999999999999999999999865 69999999999999999
Q ss_pred eeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccC-CCcchhhhchhhhhccCCcEEEEeccccccCCcee
Q 013661 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKM 236 (438)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 236 (438)
+...+++|++++++|+++|+|++.... ..++++.++++...+. ..+. ++++....|+|++++|+++..++++++
T Consensus 279 ~~~~~g~~~~~~~~r~~~G~~~~~~~~-~~~~~~~~i~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~k~~~~~~~~~ 353 (380)
T TIGR01142 279 TLISQGLSEFALHVRAILGLPIPGIPQ-LGPAASAVIKAKVTGYSPAFR----GLEKALSVPNTQVRLFGKPEAYVGRRL 353 (380)
T ss_pred EeeecCCCHHHHHHHHHcCCCCCCccc-cCCceEEEEEcccccccchhh----HHHHHHcCCCCEEEECCCCcCCCCCcC
Confidence 888889999999999999999986543 3446778888764332 1122 455566779999999998777788999
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 237 GHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 237 G~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
|||++.|+|.+|+..+++++.+.+.
T Consensus 354 G~v~~~~~s~~~~~~~~~~~~~~i~ 378 (380)
T TIGR01142 354 GVALATAKSVEAARERAEEVAHAVE 378 (380)
T ss_pred EEEEEecCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999887654
No 13
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=3.9e-33 Score=283.92 Aligned_cols=253 Identities=28% Similarity=0.439 Sum_probs=210.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.++|.+++.++++++|||+|+||..+ ++|+|+++++|.+|+.++++.+.. ..+.+||||||+++.|+++.++++.
T Consensus 134 ~~~s~~~l~~~~~~~g~P~VvKP~~g-~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~ 212 (395)
T PRK09288 134 FADSLEELRAAVEEIGYPCVVKPVMS-SSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAV 212 (395)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCC-cCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcC
Confidence 46789999999999999999999765 499999999999999999987632 1246999999997799999999987
Q ss_pred CCeEEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013661 78 DKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~ 157 (438)
+|+..+++..++....|+....+.|+.++++..+++++++.+++++||+.|++|+||+++++ .+||+|+|||+++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-~~~viEinpR~~~~~~~ 291 (395)
T PRK09288 213 DGGTHFCAPIGHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-EVYFSEVSPRPHDTGMV 291 (395)
T ss_pred CCCEEEecCcccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-eEEEEEecCCCCCCcce
Confidence 76666666666666677777777899999999999999999999999999999999999866 69999999999998888
Q ss_pred eeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccC-CCcchhhhchhhhhccCCcEEEEeccccccCCcee
Q 013661 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKM 236 (438)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 236 (438)
....+++++++++++.++|+|++.... ...+++..+++...+. ..+. ++++....|++++++|+++...+++++
T Consensus 292 ~~~~~g~~~~~~~~~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~k~~~~~~~~l 366 (395)
T PRK09288 292 TLISQNLSEFELHARAILGLPIPDIRL-YSPAASAVILAEGESANPSFD----GLAEALAVPGTDVRLFGKPEIRGGRRM 366 (395)
T ss_pred eeeecccCHHHHHHHHHcCCCCCcccc-cCCceeEEEeccccccccchh----hHHHHhcCCCCEEEEecCCCCCCCCee
Confidence 877779999999999999999865543 2335666777664332 1122 444555679999999987666678999
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 237 GHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 237 G~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
|+|++.|+|.++|..+++++.+.+.
T Consensus 367 G~v~~~g~~~~~a~~~~~~~~~~i~ 391 (395)
T PRK09288 367 GVALATGEDVEEAREKAKEAASKVK 391 (395)
T ss_pred EEEEeecCCHHHHHHHHHHHHhhee
Confidence 9999999999999999999988765
No 14
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.8e-34 Score=264.58 Aligned_cols=252 Identities=26% Similarity=0.403 Sum_probs=218.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~lvEe~I~g~~e~sv~~~~d~~ 78 (438)
++|.+|+.++++++||||+|||.-++ +|+|..++++++|++++|+.+. ...++++||+||+++.|+++..++..+
T Consensus 135 a~s~~e~~~a~~~iGfPcvvKPvMSS-SGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~ 213 (394)
T COG0027 135 ADSLEELRAAVEKIGFPCVVKPVMSS-SGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVD 213 (394)
T ss_pred cccHHHHHHHHHHcCCCeeccccccc-CCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEec
Confidence 57899999999999999999997655 8999999999999999999873 334789999999998999999998777
Q ss_pred CeEEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013661 79 KSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~ 158 (438)
|...+..+..|.+.+|++..++.|..+++...++.+.+++++.++||..|+|+||+|+.. +++||.|+.|||+++|+.+
T Consensus 214 ~~~~Fc~PIGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~g-DeV~FsEVSPRPHDTGmVT 292 (394)
T COG0027 214 GTGSFCAPIGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKG-DEVIFSEVSPRPHDTGMVT 292 (394)
T ss_pred CCCCcCCCcccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeC-CEEEEeecCCCCCCCceEE
Confidence 765344445788899999999999999999999999999999999999999999999985 4699999999999999999
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccC-CCcchhhhchhhhhccCCcEEEEeccccccCCceeE
Q 013661 159 IESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G 237 (438)
+.+...+-|+.|+|+++|+|++...... +++...+++..... ..|. ++.+.+..|+.++++|++|+...++|+|
T Consensus 293 LiSq~lsEF~LH~RAiLGLPi~~i~~~~-P~AS~vI~~~~~~~~~~f~----~l~~AL~~p~t~vRlFGKP~~~~~RRmG 367 (394)
T COG0027 293 LISQDLSEFALHVRAILGLPIPEIRQIS-PAASAVILAQETSQAPTFD----GLAEALGVPDTQVRLFGKPEADGGRRLG 367 (394)
T ss_pred EEeccchHHHHHHHHHhCCCccceeeec-ccccceeeccccccCCchh----hHHHHhcCCCceEEEecCCcccCCceee
Confidence 9999999999999999999999765432 23333444432221 2355 7888899999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
-.++.++|.++|+.++.++++.+.
T Consensus 368 VALA~a~~Ve~Are~A~~aa~~i~ 391 (394)
T COG0027 368 VALATAESVEEARERARKAASAIE 391 (394)
T ss_pred EEEecCccHHHHHHHHHHHHhhee
Confidence 999999999999999999998764
No 15
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3.8e-33 Score=289.93 Aligned_cols=288 Identities=19% Similarity=0.255 Sum_probs=229.3
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++.++++++|||+||||+.+| ||+||++|+|++||.++++.+.. ..+.+++|+||++++|++++++.|
T Consensus 138 v~~~~e~~~~a~~igyPvvIKp~~Gg-GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d 216 (499)
T PRK08654 138 IEDIEEAKEIAEEIGYPVIIKASAGG-GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILAD 216 (499)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeCCCC-CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEc
Confidence 57899999999999999999998887 89999999999999999876421 134699999999889999999999
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++.++.. +.+++.+.......|++ +++++++++.+.+.++++++||.|++++||+++ +|.+||+|+|||++++
T Consensus 217 ~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpRlqve 295 (499)
T PRK08654 217 KHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTRLQVE 295 (499)
T ss_pred CCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECCCCCC
Confidence 88987765543 45555555555567876 899999999999999999999999999999997 5789999999999986
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecCCccCCCcchhhhchhhhhccC---CcEE--EEec
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GATV--HWYD 226 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~~~--~~~~ 226 (438)
.+++...+|+|+++++++.++|.+++..+. ..++++.+|++++ +|...|.|..+.+.. ...| ++.+ .++.
T Consensus 296 h~vte~~tGvDlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae-~p~~~f~P~~G~i~~-~~~p~~~~vr~d~~~~~ 373 (499)
T PRK08654 296 HPITEMVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAE-DPLNDFAPSPGKIKR-YRSPGGPGVRVDSGVHM 373 (499)
T ss_pred CceeehhhCCCHHHHHHHHhcCCCCCCcccccccceEEEEEEEEee-cCccCcCCCCCeEEE-EEcCCCCCEEEECcccC
Confidence 667778899999999999999999986432 2345778898876 454456664333332 2334 3322 2222
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
+..+.+ ++.+|++++.|.|+++|++++.++++++ .|.|-.++.+++..+...-+.....+++++
T Consensus 374 g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~ 439 (499)
T PRK08654 374 GYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEY--------------VIVGVKTNIPFHKAVMENENFVRGNLHTHF 439 (499)
T ss_pred CCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhc--------------EEECccCCHHHHHHHhCCHhhcCCCccchh
Confidence 222332 5789999999999999999999999875 457788999999999988888888888887
Q ss_pred ecCC
Q 013661 305 VSAH 308 (438)
Q Consensus 305 ~s~h 308 (438)
+.-|
T Consensus 440 ~~~~ 443 (499)
T PRK08654 440 IEEE 443 (499)
T ss_pred hhcC
Confidence 6533
No 16
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=275.49 Aligned_cols=289 Identities=19% Similarity=0.246 Sum_probs=234.0
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
..|.+++.+.++++|||+|+|++.|| ||+||+++++++|+++.++.+.. .+..+|+|+||+..+++++++++|
T Consensus 134 ~qs~e~~~~~a~eIgyPvMiKa~~GG-GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD 212 (670)
T KOG0238|consen 134 DQSDEEAKKVAREIGYPVMIKATAGG-GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGD 212 (670)
T ss_pred cccHHHHHHHHHhcCCcEEEEeccCC-CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEec
Confidence 45789999999999999999999988 99999999999999998876521 235699999999999999999999
Q ss_pred CCCeEEE-EeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+.+. +.+.|.+++.++...+..|++ ++++++.++.+.+.++++++||.|...|||++|+++.+||+|+|+|++.
T Consensus 213 ~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV- 291 (670)
T KOG0238|consen 213 KHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV- 291 (670)
T ss_pred CCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee-
Confidence 9998765 455599999988877788988 9999999999999999999999999999999999899999999999997
Q ss_pred CCceee-eccCcHHHHHHHHHhCCCCCCCCCC---CCceEEEEeecCCccCCCcchhhhchhhh---hccCCcE--EEEe
Q 013661 155 GHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKA---LSIPGAT--VHWY 225 (438)
Q Consensus 155 g~~~~~-~~~~~~~~~~~~~~~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~p~~~--~~~~ 225 (438)
.|.+.+ -+|+|++++++|.+.|.|++..+.. .+++..+|+|++.. ...|.|....+-.. ...|+++ ..+.
T Consensus 292 EHPvTEmItg~DLVewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEdp-~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~ 370 (670)
T KOG0238|consen 292 EHPVTEMITGTDLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDP-YKGFLPSAGRLVYYSFPGHSPGVRVDTGVR 370 (670)
T ss_pred cccchhhccchHHHHHHHHHhcCCCCCCCcceeeecceEEEEEEeecCC-cccCCCCCccceeeccCCCCCCeeeecCcc
Confidence 555544 5789999999999999999876653 46678899998753 35566522111111 1224443 3333
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
.+.++.+ +..++.++++|.|+++|+.|+..+++.. .|.|-+++.+++..++..-++.-.++.+.
T Consensus 371 ~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~--------------~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~ 436 (670)
T KOG0238|consen 371 SGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNY--------------VIRGVPTNIDFLRDIISHPEFAKGNVSTK 436 (670)
T ss_pred cCCcccccccchheeeeEecCCHHHHHHHHHHHHhhc--------------EEecCccchHHHHHHhcChhhhcCccccc
Confidence 3344443 5678999999999999999999999853 56888999999999988777666677766
Q ss_pred EecCC
Q 013661 304 IVSAH 308 (438)
Q Consensus 304 v~s~h 308 (438)
++.-|
T Consensus 437 fi~~~ 441 (670)
T KOG0238|consen 437 FIPEH 441 (670)
T ss_pred cchhc
Confidence 66544
No 17
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=8.8e-34 Score=282.68 Aligned_cols=287 Identities=17% Similarity=0.226 Sum_probs=233.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++..+++++|||+++|++.|| ||+||+++++++|+.++++.+.. .+++++||+|++-.+|++++++.|
T Consensus 138 ~qd~~~~~~~A~eiGyPVlIKAsaGG-GGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD 216 (645)
T COG4770 138 IQDAAELVAIAEEIGYPVLIKASAGG-GGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFAD 216 (645)
T ss_pred ccCHHHHHHHHHhcCCcEEEEeccCC-CCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEec
Confidence 56889999999999999999999988 99999999999999999986521 246799999999899999999999
Q ss_pred CCCeEEEEee-eeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPV-VETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~-~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++++.. .|++++.++...+..|++ |++++++.|.+.+.+++++.||.|..+|||+++.++.+||+|+|+|++.-
T Consensus 217 ~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVE 296 (645)
T COG4770 217 QHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVE 296 (645)
T ss_pred CCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceecc
Confidence 9999876654 499999999888889999 99999999999999999999999999999999999999999999999984
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCCC---CCceEEEEeecCCccCCCcchhhhchhhhhccC---CcE--EEEec
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GAT--VHWYD 226 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~~--~~~~~ 226 (438)
-+.|...+|+|++++++|.+.|.+|+..+.. .++++..|+|+++ |...|-|.+..+.. +..| ++. .-+..
T Consensus 297 HPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAED-p~r~FLPs~G~l~~-~~~P~~~~vRvDsGV~~ 374 (645)
T COG4770 297 HPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAED-PARGFLPSTGRLTR-YRPPAGPGVRVDSGVRE 374 (645)
T ss_pred ccchhhhhhhHHHHHHHHHhcCCcCCcccccccccceeEEEEEeccC-cccCccCCCceeEe-ecCCCCCceecccCccc
Confidence 4445556799999999999999999876643 3678899999875 44567764333322 2223 232 11222
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
+.++.+ +..+.+.+++|.|++||++++.+++..+. |-|..++.+++..+...-...+..+++.+
T Consensus 375 G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~--------------v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~ 440 (645)
T COG4770 375 GDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFE--------------VEGIATNIPFLRALMADPRFRGGDLDTGF 440 (645)
T ss_pred CCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhE--------------ecCccccHHHHHHHhcCcccccCCCccee
Confidence 233333 56789999999999999999999999753 46677889999988877777776666655
Q ss_pred ec
Q 013661 305 VS 306 (438)
Q Consensus 305 ~s 306 (438)
+.
T Consensus 441 i~ 442 (645)
T COG4770 441 IA 442 (645)
T ss_pred ee
Confidence 43
No 18
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=3.8e-32 Score=280.69 Aligned_cols=286 Identities=20% Similarity=0.264 Sum_probs=219.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+.+.+|+.++++++|||+||||..++ ||+|+++++|++||.++++.+.. ..+.++||+||+|++|+++++++
T Consensus 137 ~~~~~~e~~~~~~~igyPvvvKP~~gg-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~ 215 (447)
T PRK05586 137 EIENEEEALEIAKEIGYPVMVKASAGG-GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILG 215 (447)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEE
Confidence 357889999999999999999998877 99999999999999998875421 12459999999987999999999
Q ss_pred cCCCeEEEEeee-eeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|.+|+++.+... +..++.+.......|+ .+++++++++++++.+++++|||.|++++||+++++|++||+|||||+++
T Consensus 216 d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~ 295 (447)
T PRK05586 216 DNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQV 295 (447)
T ss_pred CCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCC
Confidence 988988766533 2334444334445566 48999999999999999999999999999999998899999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeecCCccCCCcchhhhchhhhhccCCc-EEEE----e
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHW----Y 225 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~-~~~~----~ 225 (438)
+.+++..++|+|+++++++.++|.+++.... . ..+++..+++++ .+...|.|....+.. ...|+. .+++ +
T Consensus 296 ~~~~t~~~tGid~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~-~~~~~~~p~~G~~~~-~~~~~~~~vr~~~~~~ 373 (447)
T PRK05586 296 EHPITEMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAE-DPKNGFMPCPGKIEE-LYIPGGLGVRVDSAVY 373 (447)
T ss_pred CccceehhhCCCHHHHHHHHHcCCCCCCcccccCcCceEEEEEeecc-CcccCccCCCCEEEE-EEcCCCCCeEeecccc
Confidence 7778888999999999999999999975432 1 234666777765 333345442222222 234432 2332 2
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
.+..+.+ ++++|+|++.|+|.+||++++.++++++ .+.|..++.+++..+...-+.....++++
T Consensus 374 ~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~--------------~~~g~~~~~~~~~~~~~~~~~~~~~~~t~ 439 (447)
T PRK05586 374 SGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEF--------------IIEGVNTNIDFQFIILEDEEFIKGTYDTS 439 (447)
T ss_pred CCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhc--------------EEECccCCHHHHHHHhCCHhhcCCccccH
Confidence 1222222 4689999999999999999999999875 34677899999999988776666566555
Q ss_pred E
Q 013661 304 I 304 (438)
Q Consensus 304 v 304 (438)
+
T Consensus 440 ~ 440 (447)
T PRK05586 440 F 440 (447)
T ss_pred H
Confidence 3
No 19
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=6.9e-32 Score=278.96 Aligned_cols=286 Identities=20% Similarity=0.241 Sum_probs=216.3
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++.++++++|||+||||..++ ||+|+++++|.+||.++++.+. ...+.++|||||+|++|++++++.|
T Consensus 138 ~~~~~e~~~~~~~ig~PvvvKP~~g~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d 216 (449)
T TIGR00514 138 VEDEEENVRIAKRIGYPVIIKATAGG-GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLAD 216 (449)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCC-CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEc
Confidence 56889999999999999999998877 8999999999999999987542 1224599999999889999999998
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|++..+... +...+.........|+ .++++..+++++.+.+++++||+.|++|+||+++++|.+||+|||||++++
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 217 KYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVE 296 (449)
T ss_pred CCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCC
Confidence 88887765432 2222222223334455 499999999999999999999999999999999988889999999999987
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCCC---CCceEEEEeecCCccCCCcchhhhchhhh--hccCCcEEEEec--c
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGATVHWYD--K 227 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~p~~~~~~~~--~ 227 (438)
.+++..++|+|+++++++.++|.+++..... ...++..+++++. +...|.|....+.++ ...||+.+..+. +
T Consensus 297 ~~~~~~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~~-~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G 375 (449)
T TIGR00514 297 HPVTEMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAED-PIKTFLPSPGRITRYLPPGGPGVRWDSHVYSG 375 (449)
T ss_pred cceeehhcCCcHHHHHHHHHCCCCCCCccccCCCceEEEEEEeeccC-CCCCeeeCCCEEEEEEcCCCCCEeeccCccCC
Confidence 6777789999999999999999999854322 2335566666653 333344422222221 223555432221 2
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
..+.+ ++++|+||+.|+|.+||++++.++++.+ .|.|..++.++++.+...-+.....+++++
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~--------------~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~ 440 (449)
T TIGR00514 376 YTVPPYYDSMIGKLITYGKTREVAIARMKRALSEF--------------IIDGIKTTIPFHQRILEDENFQHGGTNIHY 440 (449)
T ss_pred CEeCccccccceEEEEEcCCHHHHHHHHHHHHhhc--------------EEeCccCCHHHHHHHhcChhhcCCceeehh
Confidence 22222 4689999999999999999999999875 347788999999999877666555665553
No 20
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=4.8e-32 Score=280.87 Aligned_cols=288 Identities=17% Similarity=0.228 Sum_probs=221.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+.+.+++.++++++||||||||..++ ||+|+++++|++||.++++.+. -..+.++||+||++++|+++++++
T Consensus 140 ~v~~~~e~~~~~~~igyPvvvKp~~gg-gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~ 218 (467)
T PRK12833 140 VVASLDAALEVAARIGYPLMIKAAAGG-GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILG 218 (467)
T ss_pred CcCCHHHHHHHHHHhCCCEEEEECCCC-CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEe
Confidence 457889999999999999999998887 8999999999999999886531 113459999999977999999998
Q ss_pred cCCCeEEEEeeeeeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013661 76 GRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
|+++.+..+...+.+++..+......|+ .++++..+++.+++.+++++|||+|++++||++++ +|++||+|||||+++
T Consensus 219 dg~~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~ 298 (467)
T PRK12833 219 DGERVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQV 298 (467)
T ss_pred CCCcEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCc
Confidence 7664455555445555444444555565 48999999999999999999999999999999984 578999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecCCccCCCcchhhhchhhh--hccCCcEE--EEec
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGATV--HWYD 226 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~p~~~~--~~~~ 226 (438)
+.+++...+|+|+++++++.++|.+++.... ..++++..+++++ ++...|.|....+..+ ...||+.+ ..+.
T Consensus 299 ~~~~te~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae-~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~ 377 (467)
T PRK12833 299 EHPVTEAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAE-DPLRDFFPNPGRIDALVWPQGPGVRVDSLLYP 377 (467)
T ss_pred chhhhHHHhCCCHHHHHHHHHCCCCCCCCccccCcceEEEEEEEecc-cCCCCcccCCCEEEEEEcCCCCCeEEecceeC
Confidence 6566667899999999999999999985321 2345667788766 3434455533333322 22355533 3333
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
+..+.+ ++++|+|++.|.|++||++++.++++++. |.|..++.+++..+...-+.....+++++
T Consensus 378 G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~--------------i~g~~t~~~~~~~~~~~~~~~~~~~~t~~ 443 (467)
T PRK12833 378 GYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELR--------------IDGMKTTAPLHRALLADADVRAGRFHTNF 443 (467)
T ss_pred cCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcE--------------eECccCCHHHHHHHhcChhhcCCCcccHH
Confidence 333333 56899999999999999999999999763 47778999999999988777777777775
Q ss_pred e
Q 013661 305 V 305 (438)
Q Consensus 305 ~ 305 (438)
+
T Consensus 444 ~ 444 (467)
T PRK12833 444 L 444 (467)
T ss_pred H
Confidence 4
No 21
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.8e-31 Score=276.95 Aligned_cols=288 Identities=18% Similarity=0.227 Sum_probs=224.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+++.+++.++++++||||||||+.++ ||+||++|+|++||.++++.+. .....+++|+||++++|+++++++|
T Consensus 137 ~~~~~e~~~~~~~igyPvvvKp~~gg-Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d 215 (472)
T PRK07178 137 LADLDEALAEAERIGYPVMLKATSGG-GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILAD 215 (472)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCC-CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEE
Confidence 57889999999999999999998887 9999999999999999886531 1124599999999889999999999
Q ss_pred CCCeEEE-EeeeeeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++. ++..+..++.+....+..|+ .+++++++++++.+.+++++|||.|++++||+++++|++||+|||||++++
T Consensus 216 ~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 216 SHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred CCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 8888654 44445565555545556676 599999999999999999999999999999999877889999999999987
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecCCccCCCcchhhhchhhhh--ccCCcEE--EEecc
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATV--HWYDK 227 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~p~~~~--~~~~~ 227 (438)
.+++...+|+|+++++++.++|.+++.... ..++++..+++++ ++...|.|....+..+. ..|++.+ ..+.+
T Consensus 296 ~~~te~~tGvdl~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae-~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g 374 (472)
T PRK07178 296 HTITEEITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAE-DPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTG 374 (472)
T ss_pred ccceeeeeCcCHHHHHHHHHCCCCCCCccccCCcceEEEEEEEeee-cCCcCEecCceEEEEEEcCCCCCeEEEecccCC
Confidence 777778899999999999999999986432 1345677777765 45445666432332221 1234432 22222
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013661 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~ 305 (438)
..+.+ ++..|+|++.|.|++||++++.++++++ .|.|..++.+++..+...-+.....++++++
T Consensus 375 ~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~ 440 (472)
T PRK07178 375 YTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDM--------------RVQGVKTTIPYYQEILRNPEFRSGQFNTSFV 440 (472)
T ss_pred CEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhc--------------EEeCccCCHHHHHHHhcCHhhcCCCccchhH
Confidence 23333 3346999999999999999999999875 3467789999999999887777777887765
Q ss_pred c
Q 013661 306 S 306 (438)
Q Consensus 306 s 306 (438)
-
T Consensus 441 ~ 441 (472)
T PRK07178 441 E 441 (472)
T ss_pred h
Confidence 3
No 22
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=5.7e-32 Score=276.93 Aligned_cols=305 Identities=21% Similarity=0.298 Sum_probs=248.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+++.+++.+++++.|||+++|.+.|| |||||++|.+++||.+.++++.+ ..+++.||+||++.++++|+++.|
T Consensus 144 ~~~~ee~~~fa~~~gyPvmiKA~~GG-GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD 222 (1149)
T COG1038 144 IETIEEALEFAEEYGYPVMIKAAAGG-GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGD 222 (1149)
T ss_pred cccHHHHHHHHHhcCCcEEEEEccCC-CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeec
Confidence 56799999999999999999999988 99999999999999999886531 236799999999999999999999
Q ss_pred CCCeEE-EEeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~-~~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++ .|.+.|++++.++...+..|+. |+++++++|++.+.++++.+||.|...+||+++.+|++||||+|||.+.
T Consensus 223 ~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV- 301 (1149)
T COG1038 223 THGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV- 301 (1149)
T ss_pred CCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee-
Confidence 999975 5777799999999888899998 9999999999999999999999999999999999999999999999997
Q ss_pred CCc-eeeeccCcHHHHHHHHHhCCCCCCCCC---------CCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEE
Q 013661 155 GHH-TIESCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHW 224 (438)
Q Consensus 155 g~~-~~~~~~~~~~~~~~~~~~G~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 224 (438)
.|. +...+|+|.+..++..+.|..|..... ..+.++.+|+..+ +|...|.|-+..+.....-.|.-+++
T Consensus 302 EHTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTE-DP~n~F~PDtGrI~aYRs~gGfGVRL 380 (1149)
T COG1038 302 EHTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTE-DPENGFIPDTGRITAYRSAGGFGVRL 380 (1149)
T ss_pred EEeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeecc-CcccCCCCCCceEEEEecCCCceEEe
Confidence 454 455689999999999999998874221 1356888998876 56677887332222222233445666
Q ss_pred ec-----cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC
Q 013661 225 YD-----KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 225 ~~-----~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G 297 (438)
-+ +.++.| ++.+-.+.++|.++++|.+|+.+++.++.+ .|..++.++++.+...-++..
T Consensus 381 D~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrI--------------rGVkTNi~FL~~vl~h~~F~~ 446 (1149)
T COG1038 381 DGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI--------------RGVKTNIPFLEAVLNHPDFRS 446 (1149)
T ss_pred cCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhee--------------cceecCcHHHHHHhcCccccc
Confidence 43 234444 577889999999999999999999998753 566789999999999888888
Q ss_pred CcEEEEEecCCCChHHHHHhHhhhhhcCCeE
Q 013661 298 VPHEVRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 298 ~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v 328 (438)
..|.++++ .-||+ ++++.+. .++|.++
T Consensus 447 g~y~T~FI--d~tPe-Lf~~~~~-~Dr~tK~ 473 (1149)
T COG1038 447 GRYTTSFI--DTTPE-LFQFPKS-QDRGTKL 473 (1149)
T ss_pred Ccceeeec--cCCHH-Hhccccc-cchhHHH
Confidence 88988865 67777 4555433 3445553
No 23
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=1.6e-31 Score=277.67 Aligned_cols=286 Identities=17% Similarity=0.193 Sum_probs=221.1
Q ss_pred CCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.+.+++.++++++|||+|+||..++ ||+|+++++|++||.++++.+. ...+.++||+||++++|+++++++|.
T Consensus 139 ~~~~~~~~~~~~igyPvvvKP~~gg-Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~ 217 (478)
T PRK08463 139 ESMEEIKIFARKIGYPVILKASGGG-GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDN 217 (478)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCC-CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcC
Confidence 4788999999999999999998877 8999999999999999887531 12356999999998899999999988
Q ss_pred CCeEEEEe-eeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 78 DKSILCYP-VVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 78 ~G~~~~~~-~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
+|+++.+. ..+..++.+.......|++ +++++++++++.+.+++++|||.|++++||+++++|++||+|+|||++++.
T Consensus 218 ~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~ 297 (478)
T PRK08463 218 YGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEH 297 (478)
T ss_pred CCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCc
Confidence 88765443 2234444444455567775 999999999999999999999999999999999878899999999999977
Q ss_pred CceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecCCccCCCcchhhhchhhhh--ccCCc--EEEEeccc
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGA--TVHWYDKP 228 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~p~~--~~~~~~~~ 228 (438)
+++...+|+|+++++++.++|.+++.... ..++++..+++++. +...|.|....+..+. .-|++ +...+.+.
T Consensus 298 ~~te~~tGidlv~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~ 376 (478)
T PRK08463 298 GVTEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAEN-VWKNFIPSPGKITEYYPALGPSVRVDSHIYKDY 376 (478)
T ss_pred ceeeHhhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEEEeccC-cccCeecCCcEEEEEEcCCCCCeeEeccccCCC
Confidence 77788899999999999999999875322 23456777877654 4334555322222221 11333 22222222
Q ss_pred cccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013661 229 EMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 229 ~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~ 305 (438)
.+.+ ++++|++++.|+|+++|+.++.++++++ .|.|..++.+++..+...-+.....++++++
T Consensus 377 ~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~ 441 (478)
T PRK08463 377 TIPPYYDSMLAKLIVKATSYDLAVNKLERALKEF--------------VIDGIRTTIPFLIAITKTREFRRGYFDTSYI 441 (478)
T ss_pred EeCcccccceeEEEEECCCHHHHHHHHHHHHhhc--------------EEeCccCCHHHHHHHhCCHHHhCCCccchhh
Confidence 3332 5789999999999999999999999875 4578889999999998887777777777754
No 24
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=4.5e-31 Score=266.58 Aligned_cols=285 Identities=21% Similarity=0.278 Sum_probs=227.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+|+.+.++++||||||||+.|+ ||+||++|++.+||.++++.+.+ .++.+++||||++.+++.++++.|
T Consensus 138 ~~~~ee~~~~a~~iGyPVivKa~~Gg-Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD 216 (449)
T COG0439 138 VADNEEALAIAEEIGYPVIVKAAAGG-GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGD 216 (449)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC-CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEc
Confidence 46789999999999999999999887 99999999999999999986531 134599999999989999999999
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
++|+++.++.. +.+++..+......|++ ++++.+.++.+.+.++++.+||.|..++||+++.+|++||+|+|+|+++-
T Consensus 217 ~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqve 296 (449)
T COG0439 217 GHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVE 296 (449)
T ss_pred CcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccC
Confidence 99988766655 57888888788888987 89999999999999999999999999999999976789999999999985
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeecCCccCCCcchhhhchhhhhccCCc-----EEEEec
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-----TVHWYD 226 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~-----~~~~~~ 226 (438)
.+.+...+|+|+++++++.++|.+++.... . .++++.+|++.++ +...|.|.. +.-.....|+. +...+.
T Consensus 297 h~vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~g~aie~Ri~aed-p~~~f~psp-G~i~~~~~P~g~gvr~d~~~~~ 374 (449)
T COG0439 297 HPVTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAED-PLGNFLPSP-GKITRYAPPGGPGVRVDSGVYD 374 (449)
T ss_pred ccceehhhhhhHHHHHHHHHcCCCCCCCCCcccccceeeeceeeccC-CCCCcCCCC-CeeeeecCCCCCceEEEeeccc
Confidence 555666789999999999999988877552 2 2467888988764 433365532 22222334532 333444
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
+..+.+ ++.+|++++.|.+.++|+.++.+++.++. +.|-.+..+...++.+.....--++++.+
T Consensus 375 ~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~--------------i~G~~t~~~~~~~~~~~~~~~~g~~~t~~ 440 (449)
T COG0439 375 GYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELV--------------IDGIKTNIPLLQEILRDPDFLAGDLDTHF 440 (449)
T ss_pred CcccCcchhhheeEEEEecCChHHHHHHHHHHHHheE--------------ecCccCChHHHHHHhcChHhhcCCcchhh
Confidence 444444 68899999999999999999999999753 45556778888888877666555555553
No 25
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=5.9e-31 Score=292.98 Aligned_cols=296 Identities=17% Similarity=0.259 Sum_probs=236.7
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++.++++++|||+||||+.++ ||+||++|++++||+++++.+.. ..+.++||+||++++|+++++++|
T Consensus 138 v~~~eea~~~ae~iGyPvIVKP~~GG-GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD 216 (1143)
T TIGR01235 138 PETMEEVLDFAAAIGYPVIIKASWGG-GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGD 216 (1143)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC-CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEe
Confidence 46889999999999999999998887 89999999999999998876421 134699999999889999999999
Q ss_pred CCCeEEE-EeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++. +...+.+++.+.......|+. ++++++++|++++.++++++||.|++++||+++++|++||+|||||++++
T Consensus 217 ~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 217 KHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred CCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 9898654 444456666555555667774 99999999999999999999999999999999988899999999999986
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCC--C----CC---CCCceEEEEeecCCccCCCcchhhhchhhhhccC-CcEEEE
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGD--P----SM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP-GATVHW 224 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~--~----~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p-~~~~~~ 224 (438)
.+++...+|+|+++.+++.+.|.+++. . +. ..++++.+|++++ +|...|.|..+.+.. .+.| |..+++
T Consensus 297 h~vTe~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~e-dp~~~f~p~~g~i~~-~~~~~g~gvr~ 374 (1143)
T TIGR01235 297 HTVTEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTE-DPANNFQPDTGRIEA-YRSAGGFGIRL 374 (1143)
T ss_pred hhHHHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeee-cCCCCcccCCcEeeE-EecCCCCCeEe
Confidence 666667889999999999999999982 1 11 2356888999876 565668874444432 3344 222333
Q ss_pred -----eccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC
Q 013661 225 -----YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 225 -----~~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G 297 (438)
|.+..+.+ ++.++++++.|.|+++|++|+.++++++ .|.|..++.++++.+...-+...
T Consensus 375 d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~--------------~i~gv~tn~~~l~~~l~~~~f~~ 440 (1143)
T TIGR01235 375 DGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREF--------------RIRGVKTNIPFLENVLGHPKFLD 440 (1143)
T ss_pred cccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhc--------------EEECccCCHHHHHHHhcCHhhcC
Confidence 23344544 6778999999999999999999999975 35778899999999999988888
Q ss_pred CcEEEEEecCCCChHHHHHhH
Q 013661 298 VPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 298 ~~~~~~v~s~hr~~~~~~~~~ 318 (438)
..++++++.-| |+ ++++.
T Consensus 441 ~~~~t~~~~~~--~~-l~~~~ 458 (1143)
T TIGR01235 441 GSYDTRFIDTT--PE-LFQFV 458 (1143)
T ss_pred CCccchhhhcC--hh-hcCCC
Confidence 88988877533 54 45544
No 26
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.98 E-value=3.1e-30 Score=267.08 Aligned_cols=286 Identities=20% Similarity=0.271 Sum_probs=213.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ ||+|+++++|.+||.++++.+.. ..+.++|||||+|++|+++++++
T Consensus 137 ~v~~~~~~~~~~~~~g~PvvvKP~~g~-gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (451)
T PRK08591 137 PVDDEEEALAIAKEIGYPVIIKATAGG-GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLA 215 (451)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 357889999999999999999998877 89999999999999999886421 12459999999987899999999
Q ss_pred cCCCeEEEEeee-eeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|++|++..+... +...+.+.......|+ .++++..+++++++.+++++||+.|++++||+++++|++||+|||||+++
T Consensus 216 d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~ 295 (451)
T PRK08591 216 DGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQV 295 (451)
T ss_pred cCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCc
Confidence 988887655432 2233333333444566 49999999999999999999999999999999997888999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCCC---CCceEEEEeecCCccCCCcchhhhchhhhhccC---CcEEEE--e
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GATVHW--Y 225 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~~~~~--~ 225 (438)
+.+++..++|+|+++.+++.++|.|++..... ..+++..++.++. +...+.|....+.. ...| ++.+.. .
T Consensus 296 ~~~~~~~~~Gvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~-~~~~~~p~~g~~~~-~~~~~~~~v~~~~~~~ 373 (451)
T PRK08591 296 EHPVTEMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAED-PAKNFMPSPGKITR-YHPPGGPGVRVDSAVY 373 (451)
T ss_pred cchhhhhhhCCCHHHHHHHHHCCCCCCCcccccCcCceEEEEEEeeec-CccCcccCCCEeeE-EEcCCCCCeeeccccc
Confidence 66666678999999999999999998754321 2334445655443 32334332111111 1223 332222 1
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
.+..+.+ ++++|+|++.|+|.+||+.++.++++.+. |.|..++.+++..+...-+.....++++
T Consensus 374 ~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~--------------i~g~~tn~~~~~~~~~~~~f~~~~~~t~ 439 (451)
T PRK08591 374 TGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFV--------------IDGIKTTIPLHLRLLNDPNFQAGDYNIH 439 (451)
T ss_pred CCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCE--------------EECCCCCHHHHHHHhcCHhhhCCCcccH
Confidence 1112221 46899999999999999999999998764 4677899999999988877666666665
Q ss_pred E
Q 013661 304 I 304 (438)
Q Consensus 304 v 304 (438)
+
T Consensus 440 ~ 440 (451)
T PRK08591 440 Y 440 (451)
T ss_pred H
Confidence 3
No 27
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.98 E-value=2.5e-30 Score=289.35 Aligned_cols=296 Identities=20% Similarity=0.290 Sum_probs=232.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.|.+++.++++++|||||+||..++ ||+||++|++++||.++++.+.. ..+.+++|+||+|.+|+++++++|
T Consensus 142 v~s~eea~~~a~~iGyPvVVKP~~Gg-GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D 220 (1146)
T PRK12999 142 IDDIEEALEFAEEIGYPIMLKASAGG-GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGD 220 (1146)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECCCC-CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEE
Confidence 57899999999999999999998887 99999999999999998876421 134699999999889999999999
Q ss_pred CCCeEEEE-eeeeeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCY-PVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~-~~~e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++.+ ...+.+++.+.......|+ .++++.++++++++.++++++||.|++++||+++++|.+||+|||||++++
T Consensus 221 ~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 221 KHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred CCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCc
Confidence 88887654 4446666666655566777 499999999999999999999999999999999988789999999999975
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC---------CCCceEEEEeecCCccCCCcchhhhchhhhhccCCc-EEEE
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHW 224 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~-~~~~ 224 (438)
.+++...+|+|+++.+++.++|.+++.... ..++++.+|++++. |...|.|....+.. ...|+. .+++
T Consensus 301 h~vte~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aed-p~~~f~P~~G~i~~-~~~p~~~~vr~ 378 (1146)
T PRK12999 301 HTVTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTED-PANNFMPDTGRITA-YRSPGGFGVRL 378 (1146)
T ss_pred chHHHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeec-CccCccCCCcEEEE-EEcCCCCcEEe
Confidence 455667889999999999999999876321 12456778888864 54556663323322 334432 3333
Q ss_pred ec-----cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC
Q 013661 225 YD-----KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 225 ~~-----~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G 297 (438)
.+ +..+.+ ++.+++|++.|.|+++|+.++.++++++. |.|..++.+++..+...-+...
T Consensus 379 d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~--------------i~gv~tn~~~l~~~~~~~~f~~ 444 (1146)
T PRK12999 379 DGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR--------------IRGVKTNIPFLENVLKHPDFRA 444 (1146)
T ss_pred eccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcE--------------EecccCcHHHHHHHhCCHhhcC
Confidence 22 223333 56689999999999999999999999763 4677899999999999888888
Q ss_pred CcEEEEEecCCCChHHHHHhH
Q 013661 298 VPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 298 ~~~~~~v~s~hr~~~~~~~~~ 318 (438)
..++++++.-| |+ +..+-
T Consensus 445 ~~~~t~~~~~~--~~-l~~~~ 462 (1146)
T PRK12999 445 GDYTTSFIDET--PE-LFDFP 462 (1146)
T ss_pred CCccchhhhcC--hh-hhhCC
Confidence 88888876543 65 45443
No 28
>PRK08462 biotin carboxylase; Validated
Probab=99.97 E-value=6.6e-30 Score=264.08 Aligned_cols=285 Identities=18% Similarity=0.228 Sum_probs=211.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++.++++++|||+||||..++ ||+|+++++|++||.++++... ...+.+++|+||+|++|++++++++
T Consensus 140 ~~~~~~~~~~~~~~g~PvvvKP~~g~-gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~ 218 (445)
T PRK08462 140 LKSYEEAKKIAKEIGYPVILKAAAGG-GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGD 218 (445)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEEC
Confidence 56889999999999999999998877 8999999999999999886431 1224699999999879999999998
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++.++.. +...+.........|+ .++++..+++.+++.+++++||+.|++++||+++++|++||+|||||++++
T Consensus 219 ~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 219 KHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVE 298 (445)
T ss_pred CCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcC
Confidence 88887766432 2233323223334566 489999999999999999999999999999999987789999999999874
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC--CCCceEEEEeecCCccCCCcchhhhchhhhhccCCc-EEEEec----c
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHWYD----K 227 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~-~~~~~~----~ 227 (438)
..++..++|+|+++.+++.++|.+++.... ...+++..+++++... .|.|....+..+ ..|+. .+++.. +
T Consensus 299 ~~~~~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~~~--~~~p~~G~l~~~-~~~~~~~~r~~~~~~~g 375 (445)
T PRK08462 299 HTVSEMVSGLDLIEWMIKIAEGEELPSQESIKLKGHAIECRITAEDPK--KFYPSPGKITKW-IAPGGRNVRMDSHAYAG 375 (445)
T ss_pred cceehhhhCCCHHHHHHHHHCCCCcccccccCCceeEEEEEeccCCCC--ceecccCEEeEE-EcCCCCCEEEccCcCCC
Confidence 444556789999999999999999875322 1234555666654321 133321112221 12221 233222 1
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013661 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~ 305 (438)
..+.+ ++++|+|++.|+|.+||+.++.++++.+ .+.|..+++++++.+...-+.....++++++
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~--------------~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
T PRK08462 376 YVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEF--------------KVEGIKTTIPFHLEMMENADFINNKYDTKYL 441 (445)
T ss_pred CEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhc--------------EEECccCCHHHHHHHhcChhhcCCceechhh
Confidence 11111 4689999999999999999999999875 3477789999999999887777777777654
No 29
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.97 E-value=1.8e-30 Score=240.41 Aligned_cols=178 Identities=24% Similarity=0.318 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
++|.+++.++++++|||+++||++++ ||+||.+++|.+||.++++.... ....++||+|+++.+|+++++++|
T Consensus 24 ~~~~eea~~~a~~iGyPVliKas~gg-GG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D 102 (211)
T PF02786_consen 24 ISSVEEALEFAEEIGYPVLIKASAGG-GGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRD 102 (211)
T ss_dssp BSSHHHHHHHHHHH-SSEEEEETTSS-TTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCceEEeecccc-cccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhc
Confidence 58999999999999999999999987 99999999999999999876421 124599999999889999999999
Q ss_pred CCCeEEEEeeeeeE-EecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013661 77 RDKSILCYPVVETI-HKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~~~~~e~~-~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
+.|+++..+..++. ++.........|++ |+++.+++|++++.++++++||+|++|+||.+++ ++++||+|+|||+++
T Consensus 103 ~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~ 182 (211)
T PF02786_consen 103 GKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQR 182 (211)
T ss_dssp TTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--T
T ss_pred cccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCC
Confidence 99988877766444 33333344456664 9999999999999999999999999999999997 789999999999999
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCC
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~ 181 (438)
+-+++.+.+|+|+++.+++.++|.+|.+
T Consensus 183 ~~p~~e~~tg~dlv~~~~~ia~G~~L~e 210 (211)
T PF02786_consen 183 EHPVTEKVTGYDLVRVQIRIALGEPLDE 210 (211)
T ss_dssp THHHHHHHHT--HHHHHHHHHTT--GSC
T ss_pred cchHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 8888899999999999999999999875
No 30
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.97 E-value=9.7e-31 Score=270.84 Aligned_cols=333 Identities=18% Similarity=0.209 Sum_probs=264.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.++|.+|+.+|++++||||+|+|++-- +|..|.++++++||+.+++.+. ++| +++.+||++.+|++++++. .
T Consensus 1053 elt~~~eA~~F~~~VgYP~lvRPSYVL-SGaAMnv~~~~~dl~~~L~~A~~vs~dhP--VVisKfie~AkEidvDAVa-~ 1128 (1435)
T KOG0370|consen 1053 ELTSLEEAKKFAEKVGYPVLVRPSYVL-SGAAMNVVYSESDLKSYLEQASAVSPDHP--VVISKFIEGAKEIDVDAVA-S 1128 (1435)
T ss_pred hhccHHHHHHHHHhcCCceEeccccee-cchhhhhhhcHHHHHHHHHHHhhcCCCCC--EEhHHhhcccceechhhhc-c
Confidence 367999999999999999999999943 5899999999999999998863 567 9999999999999999986 5
Q ss_pred CCeEEEEeeeeeEEec----CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 78 DKSILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~----g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+|+++...+.||++.. |+.+...+|..++++..+++++++.++++++.+.|++|+||+.. ++++.|||+|-|.++
T Consensus 1129 ~G~~~~haiSEHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k-~n~lkVIECN~RaSR 1207 (1435)
T KOG0370|consen 1129 DGKVLVHAISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK-DNELKVIECNVRASR 1207 (1435)
T ss_pred CCeEEEEehhhhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec-CCeEEEEEeeeeeec
Confidence 8999999999999875 45556667888999999999999999999999999999999986 567999999999999
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCC
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQ 233 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~ 233 (438)
|.+++++..|+|+++...|+++|.|++......+..+ +.+.|+.+|. ++.|.|+.+ + .+ |
T Consensus 1208 SFPFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV-----~vKvPqFSf~----------RLagADp~L-g-vE---M 1267 (1435)
T KOG0370|consen 1208 SFPFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYV-----AVKVPQFSFS----------RLAGADPVL-G-VE---M 1267 (1435)
T ss_pred cccceehhcCchHHHHHHHHHhCCCCCCccccCCCeE-----EEEccccccc----------cccCCCcee-e-eE---e
Confidence 9999999999999999999999988876543222222 2233333333 567778776 3 45 5
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHH
Q 013661 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL 313 (438)
Q Consensus 234 ~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~ 313 (438)
.++|+|-+.|.+.-||.-|+....+ +.. | ++.+.|..||+ ++.+...++.|.++|++++++ .+
T Consensus 1268 aSTGEVAcFG~~~~eaylkam~sTg-F~i----P--k~~i~i~ig~~--k~ell~~~~~l~~~gy~lyat----~~---- 1330 (1435)
T KOG0370|consen 1268 ASTGEVACFGEDRYEAYLKAMLSTG-FKI----P--KKNILISIGSY--KPELLPSARDLAKLGYKLYAT----NG---- 1330 (1435)
T ss_pred ccccceeecccchHHHHHHHHHhcC-ccc----c--CCCeEEEeccc--hHHHHHHHHHHHhcCceeEEe----cc----
Confidence 6799999999999999999998887 443 2 34555666665 999999999999999999998 66
Q ss_pred HHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEE
Q 013661 314 MFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~t 381 (438)
|.+|.. +++-.++ .--+....|...++.+....|||.|- .+++.--+...|++++..+||..|
T Consensus 1331 t~d~~~--~~~~~~~--~~~~~~~~l~~~~~~~~i~lvinlpr-~~~~~~~~Y~~RR~AvD~~ipLit 1393 (1435)
T KOG0370|consen 1331 TADFYL--ENKYAEV--SEEPTNDKLRELLANYNIDLVINLPR-PSSFVDHGYKTRRLAVDFSIPLIT 1393 (1435)
T ss_pred chhhhh--ccCChhh--ccCCChHHHHHHHhcCceeEEEecCC-cccccccCceeeeeecccCCceee
Confidence 455442 2222223 11112234777788899999999996 333322333379999999999886
No 31
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.97 E-value=2.4e-30 Score=231.34 Aligned_cols=159 Identities=43% Similarity=0.758 Sum_probs=145.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.++|.+|+.++++++|||+|+|+..+||.|+|.+++++.+|+.++++.+...+ +++|+||+..+|+++.+.++.+|++
T Consensus 13 ~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~--~ilE~~v~f~~EiSvivaR~~~G~~ 90 (172)
T PF02222_consen 13 TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGP--CILEEFVPFDREISVIVARDQDGEI 90 (172)
T ss_dssp EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSC--EEEEE---ESEEEEEEEEEETTSEE
T ss_pred EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCc--EEEEeccCCcEEEEEEEEEcCCCCE
Confidence 47899999999999999999999899999999999999999999999986555 9999999999999999999999999
Q ss_pred EEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCc-EEEEEEcCCCCCCCCceee
Q 013661 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQ-ILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~-~~viEiNpR~~~sg~~~~~ 160 (438)
.+||+.++.+.+|.+..++.|+++++++.+++++++.+++++|+|.|++.||||++++|+ +||.|+.|||++|||+++.
T Consensus 91 ~~yp~~en~~~~~il~~s~~Pa~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnSGh~Ti~ 170 (172)
T PF02222_consen 91 RFYPPVENVHRDGILHESIAPARISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIAPRPHNSGHWTIE 170 (172)
T ss_dssp EEEEEEEEEEETTEEEEEEESCSS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEESS--GGGGGHHH
T ss_pred EEEcCceEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecCCCEEEEEeccCCccCcccEeee
Confidence 999999999999999999999999999999999999999999999999999999999997 9999999999999999876
Q ss_pred ec
Q 013661 161 SC 162 (438)
Q Consensus 161 ~~ 162 (438)
+|
T Consensus 171 ~c 172 (172)
T PF02222_consen 171 AC 172 (172)
T ss_dssp HB
T ss_pred cC
Confidence 54
No 32
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.97 E-value=2.8e-29 Score=252.68 Aligned_cols=293 Identities=18% Similarity=0.233 Sum_probs=240.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+|+.+|+++.|||+++|..+|| |||||++|++.+|++++++.+. -.++.++||+|++-.++++|+.+.
T Consensus 169 Pitt~~EA~eF~k~yG~PvI~KAAyGG-GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllg 247 (1176)
T KOG0369|consen 169 PITTVEEALEFVKEYGLPVIIKAAYGG-GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLG 247 (1176)
T ss_pred CcccHHHHHHHHHhcCCcEEEeecccC-CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEec
Confidence 368899999999999999999999988 9999999999999999887642 123669999999988999999999
Q ss_pred cCCCeEE-EEeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~-~~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|..|+++ .|...|.+++.++...++.|+. |+++++++|.+-+.++++..||.....+||++|..|..||||||||++.
T Consensus 248 D~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 248 DKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred ccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 9999975 5777799999999888899997 9999999999999999999999999999999998899999999999997
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCCC------CCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEE---
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK------TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHW--- 224 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~--- 224 (438)
.-..+.+-+|+|++..+++.+.|..|++.... .+.++.+++..+ +|...|.|-+..++-...-.|.-+++
T Consensus 328 EHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTE-DPa~~FqPdtGriEVfRSgeGmGiRLD~a 406 (1176)
T KOG0369|consen 328 EHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTE-DPAKGFQPDTGRIEVFRSGEGMGIRLDGA 406 (1176)
T ss_pred eeeeeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEecc-CccccCCCCCceEEEEEeCCCceEeecCc
Confidence 43445667899999999999999999986542 356788998876 56667877332232212222223444
Q ss_pred --eccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcE
Q 013661 225 --YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 300 (438)
Q Consensus 225 --~~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~ 300 (438)
|.+..+.| ++.+-.+++.|.|.+-+.+|+.+++.++.. -|..++.+++..+...-..+-..+
T Consensus 407 safaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRi--------------RGVKTNIpFllnvL~n~~Fl~g~~ 472 (1176)
T KOG0369|consen 407 SAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRI--------------RGVKTNIPFLLNVLTNPVFLEGTV 472 (1176)
T ss_pred cccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhh--------------cceecCcHHHHHHhcCcceeeeee
Confidence 23334454 677899999999999999999999998763 445678899999888878888889
Q ss_pred EEEEecCCCChH
Q 013661 301 EVRIVSAHRTPD 312 (438)
Q Consensus 301 ~~~v~s~hr~~~ 312 (438)
+++++ ..+|+
T Consensus 473 ~T~FI--De~Pe 482 (1176)
T KOG0369|consen 473 DTTFI--DETPE 482 (1176)
T ss_pred eeEEe--cCChH
Confidence 98876 45565
No 33
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=1.5e-29 Score=284.02 Aligned_cols=243 Identities=19% Similarity=0.202 Sum_probs=201.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC--CCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+|+.++++++|||+||||+.+. ||+|+.+++|++||.++++.+... ..++|||+||+|.+|+++++++|.+|
T Consensus 148 ~v~s~ee~~~~~~~igyPvVVKP~~g~-gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g 226 (1068)
T PRK12815 148 IVTSVEEALAFAEKIGFPIIVRPAYTL-GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNG 226 (1068)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEECcCC-CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCC
Confidence 467899999999999999999998754 899999999999999999765432 24699999999888999999999999
Q ss_pred eEEEEeeeeeEEecCeE---EEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC-CcEEEEEEcCCCCCC
Q 013661 80 SILCYPVVETIHKENIC---HIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNS 154 (438)
Q Consensus 80 ~~~~~~~~e~~~~~g~~---~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~s 154 (438)
++..++..+++...|.. ...+.|+ .++++..+++++++.+++++||++|++|+||+++++ |++||+|+|||++++
T Consensus 227 ~~~~~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s 306 (1068)
T PRK12815 227 NCITVCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRS 306 (1068)
T ss_pred CEEEEEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccc
Confidence 98888877776554432 3345677 489999999999999999999999999999999975 689999999999999
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhh-hhccCCcEEEEeccccccCC
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQQ 233 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~p~~~~~~~~~~~~~~~ 233 (438)
++++..++|.++....++.++|.++++..... ++... ..++| .++. +.+.|.|++++|++.+.+++
T Consensus 307 ~~l~~~atG~pl~~~~~~~alG~~l~ei~~~i--------~g~~~--a~~ep---~~d~~~~k~p~~~f~~y~~~~~~~g 373 (1068)
T PRK12815 307 SALASKATGYPIAKIAAKLAVGYTLNELKNPV--------TGLTY--ASFEP---ALDYVVVKFPRWPFDKFGYADRTLG 373 (1068)
T ss_pred hhhhhHhhCCcHHHHHHHHHcCCChHHhcCCc--------cCCcc--cccCC---ccceEEEEeccCccccccCcccccc
Confidence 99999999999999999999999988764321 11100 12332 3333 45689999999988776776
Q ss_pred cee---EEEEEEcCCHHHHHHHHHHHhh
Q 013661 234 RKM---GHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 234 ~~~---G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
+.| |||++.|+|++||+.|+.+++.
T Consensus 374 ~kmks~G~v~~ig~~~eea~~ka~~~~~ 401 (1068)
T PRK12815 374 TQMKATGEVMAIGRNFESAFQKALRSLE 401 (1068)
T ss_pred ceecccceEEEecCCHHHHHHHHHHhhc
Confidence 666 9999999999999999999986
No 34
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.97 E-value=4e-29 Score=280.57 Aligned_cols=243 Identities=20% Similarity=0.223 Sum_probs=198.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCC--CcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFD--RGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~--~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+++.++++++|||+||||+.++ ||+|+.+++|++||.+++..+...+ +++||||||+|.+|+++++++|.+|
T Consensus 147 ~v~s~~e~~~~~~~igyPvIVKP~~g~-gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~~g 225 (1050)
T TIGR01369 147 IAHSVEEALAAAKEIGYPVIVRPAFTL-GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSND 225 (1050)
T ss_pred ecCCHHHHHHHHHHhCCCeEEECCCCC-CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeCCC
Confidence 467889999999999999999998764 9999999999999999877654322 5699999999889999999999999
Q ss_pred eEEEEeeeeeEEe----cCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013661 80 SILCYPVVETIHK----ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHN 153 (438)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~ 153 (438)
++..++..+++.. .|+. .+..|+. ++++..+++++++.+++++||+.|.+|+||+++++ |++||+|+|||+++
T Consensus 226 ~~~~~~~~e~~~p~gvh~g~~-i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~ 304 (1050)
T TIGR01369 226 NCITVCNMENFDPMGVHTGDS-IVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSR 304 (1050)
T ss_pred CEEEEeeceeccCcceecCce-EEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCc
Confidence 8888777776532 2332 3456775 89999999999999999999999999999999874 78999999999999
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhh-hhccCCcEEEEeccccccC
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQ 232 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~p~~~~~~~~~~~~~~ 232 (438)
+++.++.++|+++....++.++|.++...... +++. .+ ..|.| .++. ..+.|.|++++|++.+.++
T Consensus 305 s~~l~s~atG~pl~~~~~~~alG~~l~~~~n~--------i~g~-~~-~~~~p---~~~~~~~k~p~~~~~~~~~~~~~~ 371 (1050)
T TIGR01369 305 SSALASKATGYPIAKVAAKLAVGYGLDELKNP--------VTGT-TP-ASFEP---SLDYVVVKIPRWDFDKFAGVDRKL 371 (1050)
T ss_pred chhhhhHHhCCCHHHHHHHHHcCCCchhhcCC--------CcCc-Cc-cccCc---CCCeEEEEEEeCCCCCCCcccCCc
Confidence 99988999999999999999999998765431 1121 11 12333 3443 3457999999988766665
Q ss_pred Cc---eeEEEEEEcCCHHHHHHHHHHHhhc
Q 013661 233 QR---KMGHITIVGSSMGLVESRLNSLLKE 259 (438)
Q Consensus 233 ~~---~~G~Vi~~G~~~~eA~~ka~~a~~~ 259 (438)
++ ++|||+++|+|++||++|+.++++.
T Consensus 372 ~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 372 GTQMKSVGEVMAIGRTFEEALQKALRSLEI 401 (1050)
T ss_pred CcccceeeEEEEECCCHHHHHHHHHHHhcc
Confidence 54 4999999999999999999999873
No 35
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.97 E-value=9.7e-28 Score=269.93 Aligned_cols=346 Identities=20% Similarity=0.229 Sum_probs=242.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
++|.+++.++++++||||||||..++ ||+|+++|+|.+|+.++++.+.. ....++|||||++++|+++++++|
T Consensus 136 v~s~dea~~~a~~igyPvVVKP~~gg-GG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~D 214 (1201)
T TIGR02712 136 LSSLDEALEAAKEIGYPVMLKSTAGG-GGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGD 214 (1201)
T ss_pred cCCHHHHHHHHHhcCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEEC
Confidence 57899999999999999999998877 89999999999999988876521 124599999999779999999999
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
++|++..++.. +.+++.+.......|++ ++++.++++++.+.+++++|+|+|++++||++++ +|.+||+|||||+++
T Consensus 215 g~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~ 294 (1201)
T TIGR02712 215 GKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQV 294 (1201)
T ss_pred CCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCc
Confidence 88988777654 34555444444456664 8999999999999999999999999999999986 478999999999997
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCCC-----CCCceEEEEeecCCccCCCcchhhhchhhhhccCCc-EE--EEe
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM-----KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TV--HWY 225 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~-~~--~~~ 225 (438)
..+++..++|+|+++++++.++|.+++.... ..+.++..+++++. +...+.|....+.. ..+|+. ++ ...
T Consensus 295 ~~~lte~~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~-p~~~~~p~~G~l~~-v~~p~~vrvd~~v~ 372 (1201)
T TIGR02712 295 EHPVTEMVTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAEN-PAKNFQPSPGLLTD-VQFPDDVRVDTWVE 372 (1201)
T ss_pred chhhHHHHhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccC-cccCcCCCCceeeE-EECCCeEEEeceec
Confidence 5556667889999999999999998765422 12345667777653 32334432112212 234432 22 111
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
.+..+.+ ++++|+|++.|+|+++|++++.++++++. +.|..++++.+..+...-......+.++
T Consensus 373 ~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~--------------i~G~~tn~~~l~~~~~~~~~~~~~~~t~ 438 (1201)
T TIGR02712 373 TGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETR--------------VYGIETNLDYLRSILSSETFRSAQVSTR 438 (1201)
T ss_pred CCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceE--------------EcCcCcCHHHHHHHhcChhhcCCCccch
Confidence 1222222 58899999999999999999999999764 3667789999999887755545454444
Q ss_pred EecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHH--HhhhCCCCCceE
Q 013661 304 IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLL--SIVQMPRGVPVA 380 (438)
Q Consensus 304 v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~--s~~~~~~g~p~~ 380 (438)
+ +.++.-..-.+.|.-+|.-..+=+. =|+.-.-=+|||+++ .+|-..--| +-+.-|.+-++.
T Consensus 439 ~-------------l~~~~~~~~~i~v~~~G~~ttvQD~-pGR~g~~~~Gvp~sG-~mD~~a~~~aN~lvgN~~~~a~l 502 (1201)
T TIGR02712 439 T-------------LNSFVYTPPAIEVLSPGAQTTVQDY-PGRTGYWDVGVPPSG-PMDSYSFRLANRIVGNDEGAAGL 502 (1201)
T ss_pred h-------------hhhCCCCCCeEEEeccCCCccccCc-CCCCccccCCCCCcc-hhhHHHHHHHHHHhCCCCCCcEE
Confidence 2 2222211122334444433333221 145666778999964 344433111 223346666665
No 36
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=6.8e-29 Score=279.61 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=199.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+|+.++++++|||+||||..+ +||+|+.+++|++||.++++.... ...++|||+||+|.+|+++.+++|.+|
T Consensus 148 ~v~s~~e~~~~~~~ig~PvVVKP~~g-~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~rd~~g 226 (1066)
T PRK05294 148 IAHSMEEALEVAEEIGYPVIIRPSFT-LGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKND 226 (1066)
T ss_pred eeCCHHHHHHHHHHcCCCeEEEcCCC-CCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEEEcCCC
Confidence 46788999999999999999999765 499999999999999999875432 224699999999888999999999999
Q ss_pred eEEEEeeeeeEEe----cCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcc-eEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013661 80 SILCYPVVETIHK----ENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTN-NGQILLNEVAPRPH 152 (438)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~-~g~~~viEiNpR~~ 152 (438)
++..++..++... .|.. ....|+ .++++..+++++++.+++++||++ |++|+||++++ +|++||+|+|||++
T Consensus 227 ~~~~~~~~e~~dp~gih~g~~-~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 227 NCIIVCSIENIDPMGVHTGDS-ITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred CEEEEeeeeeccccceecCCe-EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCC
Confidence 9888887776522 2332 445677 589999999999999999999999 99999999995 57899999999999
Q ss_pred CCCCceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEee-cCCccCCCcchhhhchhh-hhccCCcEEEEeccccc
Q 013661 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLL-GEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEM 230 (438)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~-~~~~p~~~~~~~~~~~~ 230 (438)
+++.+++.++|.++....++.++|.++..... .+ +... ..++| .++. ..+.|+|++++|++.+.
T Consensus 306 ~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~n---------~~~g~~~--~~~~p---~~~~v~~k~p~~~~~~y~k~~~ 371 (1066)
T PRK05294 306 RSSALASKATGYPIAKVAAKLAVGYTLDEIKN---------DITGKTP--ASFEP---SLDYVVTKIPRFAFEKFPGADR 371 (1066)
T ss_pred cceeeeeHhhCCCHHHHHHHHHcCCChHHhcC---------cccCCCc--ccccc---cCCeEEEEccCCccccccCCCC
Confidence 99888888999999999999999998855432 22 1110 12322 4444 45689999999998777
Q ss_pred cCC---ceeEEEEEEcCCHHHHHHHHHHHhh
Q 013661 231 RQQ---RKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 231 ~~~---~~~G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
+++ +++|||++.|+|++||+.|+.+.++
T Consensus 372 ~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~ 402 (1066)
T PRK05294 372 RLGTQMKSVGEVMAIGRTFEESLQKALRSLE 402 (1066)
T ss_pred CccceecccceEEEEcCCHHHHHHHHHHhcC
Confidence 776 9999999999999999999999885
No 37
>PLN02735 carbamoyl-phosphate synthase
Probab=99.97 E-value=8.1e-29 Score=277.40 Aligned_cols=242 Identities=18% Similarity=0.191 Sum_probs=192.4
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013661 2 EVNDLESARRAGKQFG-YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 2 ~v~s~ee~~~~~~~ig-yPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~e~sv~~~~d~~ 78 (438)
.+++.+++.++++++| ||+||||++++ ||+|+.+|+|++||.++++.+. ...+++||||||.|++|+++++++|.+
T Consensus 164 ~v~s~eea~~~~~~iG~yPvVVKP~~~~-GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~Vl~D~~ 242 (1102)
T PLN02735 164 IATTLDECFEIAEDIGEFPLIIRPAFTL-GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLA 242 (1102)
T ss_pred EeCCHHHHHHHHHHhCCCCEEEEeCCCC-CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEEEEcCC
Confidence 4578889999999999 99999998854 8999999999999999997753 334679999999987999999999887
Q ss_pred CeEEEEeeeeeEEe----cCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCc-ceEEEEEEEEeC-CCcEEEEEEcCCC
Q 013661 79 KSILCYPVVETIHK----ENICHIVKAPA-AVPWKISELATDVAHKAVSSLEG-AGIFAVELFWTN-NGQILLNEVAPRP 151 (438)
Q Consensus 79 G~~~~~~~~e~~~~----~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~-~G~~~ve~~~~~-~g~~~viEiNpR~ 151 (438)
|++..++..+++.. .|+. ..+.|+ .++++..+++++++.+++++||+ .|.+|+||++++ +|++||+|+|||+
T Consensus 243 g~~i~v~~ie~~dp~gvh~G~s-~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~ 321 (1102)
T PLN02735 243 DNVVIICSIENIDPMGVHTGDS-ITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRV 321 (1102)
T ss_pred CCEEEEeeEEEEcCCccccCCE-EEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCC
Confidence 88777676666532 3443 344677 49999999999999999999999 499999999995 7889999999999
Q ss_pred CCCCCceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhh-hhccCCcEEEEeccccc
Q 013661 152 HNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEM 230 (438)
Q Consensus 152 ~~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~p~~~~~~~~~~~~ 230 (438)
+++..+...++|+|+.+.+++.++|.++.+......... ...|+| .++. +.+.|.|.+..|.+...
T Consensus 322 s~ss~l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~----------~a~~ep---~~d~~~~k~p~~~f~~f~~~~~ 388 (1102)
T PLN02735 322 SRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITLKT----------PASFEP---SIDYVVTKIPRFAFEKFPGSQP 388 (1102)
T ss_pred CCcchhhhhhhCCCHHHHHHHHHCCCChhhhcccccccc----------chheee---cCCcEEEEcccCCcccccCCCc
Confidence 998888888999999999999999999987643211100 012443 2332 24667776655543221
Q ss_pred c---CCceeEEEEEEcCCHHHHHHHHHHHhh
Q 013661 231 R---QQRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 231 ~---~~~~~G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
. .|+++|+||++|+|++||+.|+.+.+.
T Consensus 389 ~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~ 419 (1102)
T PLN02735 389 ILTTQMKSVGEAMALGRTFQESFQKALRSLE 419 (1102)
T ss_pred ccceeeeecceEEEecCCHHHHHHHHHHHhc
Confidence 1 178899999999999999999999876
No 38
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.96 E-value=6e-28 Score=249.96 Aligned_cols=283 Identities=16% Similarity=0.160 Sum_probs=205.0
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+++.+++.++++++|||+||||..++ ||+|+++++|.+|+.++++.+. ...+.++|||||+|.+|++++++.+
T Consensus 138 ~~~~~e~~~~~~~~~~P~VvKP~~g~-gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~ 216 (450)
T PRK06111 138 LEDAEEAIAIARQIGYPVMLKASAGG-GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLAD 216 (450)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEc
Confidence 46888999999999999999998876 8999999999999999987641 1234699999999878999999998
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|++..+... +.....+.......|++ +++++.+++++++.+++++||+.|++++||+++++|++||+|||||++++
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~ 296 (450)
T PRK06111 217 THGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVE 296 (450)
T ss_pred CCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCc
Confidence 88876655322 22222222222234554 78899999999999999999999999999999987789999999999987
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecCCccCCCcchhhhchh-hh--hccCCcEEEEec--
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIG-KA--LSIPGATVHWYD-- 226 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~--~~~p~~~~~~~~-- 226 (438)
.+++..++|+|+++.+++.++|.+++.... ....+++.++++.... .+.|.. +.. .+ ...+++.+..+.
T Consensus 297 ~~~~~~~~Gvd~~~~~i~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~~-G~~~~i~~~~~~~~~~~~~~~~ 373 (450)
T PRK06111 297 HPVTEEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPK--TFFPSP-GKITDLTLPGGEGVRHDHAVEN 373 (450)
T ss_pred chhhHHHhCcCHHHHHHHHhcCCCCCCccccCCcCceEEEEEEecCCCC--CcccCC-CeeCeEecCCCCCEEEEecccC
Confidence 777777899999999999999999875421 1233455666654311 111110 111 11 111223222111
Q ss_pred ccccc--CCceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 227 KPEMR--QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 227 ~~~~~--~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
+..+. ..+++|+|++.|+|.+||.+++.++++++.. .|..++.+.+.++.+.-+..-..+++.
T Consensus 374 G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (450)
T PRK06111 374 GVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKV--------------EGIKTNIPLLLQVLEDPVFKAGGYTTG 438 (450)
T ss_pred CCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEE--------------eCccCCHHHHHHHhcChhhcCCcccch
Confidence 11111 1357799999999999999999999998652 456789999888887766665555554
No 39
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.95 E-value=1.5e-26 Score=226.19 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=190.7
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC--CCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+++.+++.+..+++||||||||+++. ||.|..+++|++||.+..+..... ..++|+||+|.|++|+.+++.+|.+++
T Consensus 136 ~~~~~e~~~~~~~ig~PvIVrP~~~l-GG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n 214 (400)
T COG0458 136 AHSVEEADEIADEIGYPVIVKPSFGL-GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDN 214 (400)
T ss_pred cccHHHHhhhHhhcCCCEEEecCcCC-CCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCC
Confidence 56889999999999999999998865 899999999999999988775432 267999999999999999999999998
Q ss_pred EEEEeeeeeEEecCeE---EEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC-CcEEEEEEcCCCCCCC
Q 013661 81 ILCYPVVETIHKENIC---HIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNSG 155 (438)
Q Consensus 81 ~~~~~~~e~~~~~g~~---~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~sg 155 (438)
+.....+++....|.+ +....|++ +++...+.++..+.+++++||..|.+|+||.++++ +++|++|+|||+|+|.
T Consensus 215 ~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 215 CIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred EEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcch
Confidence 8777666777655432 23456777 88888999999999999999999999999999986 5899999999999999
Q ss_pred CceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhh-hhccCCcEEEEecccc--c-c
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPE--M-R 231 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~p~~~~~~~~~~~--~-~ 231 (438)
...+++++..........+.|..+++........ -+ ..|.| .++- +.+.|.|++..|.... . .
T Consensus 295 aLaskAtgypia~vaakla~g~~l~Ei~n~it~~----t~------a~feP---sldyvv~k~pr~~f~kf~~~~~~l~~ 361 (400)
T COG0458 295 ALASKATGYPIAKVAAKLAVGYTLDEIRNDITGR----TP------ASFEP---SLDYVVTKIPRFDFEKFPGADRRLGT 361 (400)
T ss_pred hhhhhccCChHHHHHHHhhcccCchhhcCccccc----cc------cccCC---ccceeeeecCCCCcccccccccceee
Confidence 9999999988888778888888887765422110 00 12333 3332 2455666544433211 1 1
Q ss_pred CCceeEEEEEEcCCHHHHHHHHHHHhh
Q 013661 232 QQRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 232 ~~~~~G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
.++++|+||++|+||+||+.|+.+.+.
T Consensus 362 ~mks~gevm~igr~f~eal~ka~~~l~ 388 (400)
T COG0458 362 QMKSVGEVMAIGRTFEEALQKALRSLE 388 (400)
T ss_pred eeeccceEEEecchHHHHHHHHHHhhc
Confidence 168899999999999999999998876
No 40
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.94 E-value=3.1e-28 Score=234.15 Aligned_cols=366 Identities=32% Similarity=0.305 Sum_probs=278.0
Q ss_pred EEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEE
Q 013661 57 LYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136 (438)
Q Consensus 57 ~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~ 136 (438)
+..+++.+..+++....+++-.|-+..++..+.+..+..+.....|+ .+++.+..-.+......+.+-|.+.++.++
T Consensus 3 l~~~~~~~~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a---~~I~~ka~il~k~t~~~F~~l~~~gv~~~~ 79 (373)
T KOG2835|consen 3 LTTESLDPLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMA---NSIQGKAAILNKITSFVFELLGEAGIETAF 79 (373)
T ss_pred cccccccchhhhhheeeeeeecccccCCCeeEEeeccccchhhhhhh---cchhhHHHHHHHhhhhhHhhhhhhhhheee
Confidence 44566666557777777777666666777777776666655544555 334444444444444444445667778888
Q ss_pred eCCCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHHHHhCCCCCCCCCC----CCceEEEEeecCCccCCCcchhhhchh
Q 013661 137 TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK----TPAAIMYNLLGEAEGERGFYLAHQLIG 212 (438)
Q Consensus 137 ~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~ 212 (438)
+.++..-..|++||+..+++|+...+..+.|+.+.+.+.+.++...... ...+.+-++++..+.. .+. +.-..
T Consensus 80 ~~~~~~t~~~~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~-~~~--~~li~ 156 (373)
T KOG2835|consen 80 TEQCGETAFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQII-DCA--GLLIG 156 (373)
T ss_pred ccccchhhhhcCCCCCCCceeEEeecchhhHHHhCccCccceeecCccccccccchhhcCcccchhhhh-hhh--hhhcc
Confidence 7765455779999999999999999999999999888777766432211 1123333333332110 000 00001
Q ss_pred hhhccCCcEEEEeccccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHH
Q 013661 213 KALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKI 292 (438)
Q Consensus 213 ~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~ 292 (438)
...-.++-+++++.. ++...+..||...++++..|.............. .-...+.+.+++++|...+......
T Consensus 157 r~~~~~~~~~~~~if-es~k~~~~~h~~~I~d~~ie~gv~~~~~~~~~a~-----~v~~~~~~r~~~~~d~~im~D~~~~ 230 (373)
T KOG2835|consen 157 RDEVKIMQKLPLYIF-ESLKAAWAGHNCAISDMKIEFGVDVTLGEIVLAS-----DVIDNDSWRMWPDGDGRIMKDKKVY 230 (373)
T ss_pred hhhcccccccccchh-hhhhhhhcCCccccccchhhhccchhhhhhhhhh-----cccchhheEEcccCCcceeeeeeEE
Confidence 112245556777666 5555677899999998888877766544332221 0234566889999999999999999
Q ss_pred HHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhh
Q 013661 293 LTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQ 372 (438)
Q Consensus 293 l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~ 372 (438)
+..++.+.+..+.++|++|.....|...+..+|+.+.++.|+.++|+|++++..+..| ++|+.....+|.|++||.+|
T Consensus 231 ~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~--gvp~~~~~~dg~~~~l~~V~ 308 (373)
T KOG2835|consen 231 FDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP--GVPVVFVAVDGRDNLLSIVQ 308 (373)
T ss_pred eccccCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc--Ccceeeeeccccccccccee
Confidence 9999999999999999999999999988899999999999999999999999999988 99998888999999999999
Q ss_pred CCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 013661 373 MPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYL 436 (438)
Q Consensus 373 ~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
||.|+|++|++|+++.|||.+|+++|++.++.+|.|++.|+.+++..+.+++++|+..||+.|+
T Consensus 309 ~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l~~~~~~~~~~~Kle~~~~~~~~ 372 (373)
T KOG2835|consen 309 MPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQLNQQIIILNKDRKLETVGWEPYS 372 (373)
T ss_pred ccCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcccccHHHHHHhhhHhhccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 41
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.2e-24 Score=222.44 Aligned_cols=252 Identities=13% Similarity=0.129 Sum_probs=174.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.+++++++||+||||..++ +|+||.+++|.+|+.++++.+.. ....++|||||+| +|+++.+++
T Consensus 128 ~~~~~~ea~~~~~~~~~PvVVKp~~~~-~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~ 205 (426)
T PRK13789 128 TFTEYSSSLSYLESEMLPIVIKADGLA-AGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAIS 205 (426)
T ss_pred eeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEE
Confidence 357889999999999999999997654 99999999999999999987631 1236999999997 999999998
Q ss_pred cCCCeEEEEeeeeeEEe--cCe------EEEEEeCCC-CCHHHHHHHHH-HHHHHHHhc---C--cceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL---E--GAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~--~g~------~~~~~~p~~-l~~~~~~~i~~-~a~~i~~~l---g--~~G~~~ve~~~~~~g 140 (438)
|+ +.+..+++.+...+ +++ .++++.|++ +++++.+++++ ++.+++++| | |+|++++||+++++|
T Consensus 206 dg-~~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g 284 (426)
T PRK13789 206 DG-DSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEG 284 (426)
T ss_pred CC-CEEEEccceEecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC
Confidence 64 36666776643222 111 245667877 68888888864 555666555 5 789999999999888
Q ss_pred cEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCC-CCCCCCCCCCceEEEEeecCCccCCCcchhhhchh-hhhcc
Q 013661 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGL-PLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG-KALSI 217 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~ 217 (438)
++||+|+|+|+|.+...... ....|+++.+++.+.|. +-.........++ +.+++..+....+.. +.. .....
T Consensus 285 ~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g~l~~~~~~~~~~~s~-~vv~a~~gyp~~~~~---g~~i~~~~~ 360 (426)
T PRK13789 285 EPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTGKIKVVNLKLKQGAAA-VVVLAAQGYPDSYEK---NIPLNLPET 360 (426)
T ss_pred CEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcCCCCCCCceecCCceE-EEEECcCCcCCCcCC---CCEEeccCc
Confidence 89999999999975543332 33589999999999994 2222222233333 333443322222211 111 11111
Q ss_pred --CCcEEEEec-------cccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 218 --PGATVHWYD-------KPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 218 --p~~~~~~~~-------~~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+++. +|. +.....+.|+..|++.|+|.+||.++++++++.|+.
T Consensus 361 ~~~~~~--if~a~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~ 412 (426)
T PRK13789 361 SGQNVV--LFHAGTKKKDGKVFSSGGRILGIVAQGKDLKDSVDQAYSFLEKIQA 412 (426)
T ss_pred CCCCcE--EEEeeeeeeCCEEEeCCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 2322 331 111223788888999999999999999999998875
No 42
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.2e-24 Score=223.13 Aligned_cols=252 Identities=14% Similarity=0.078 Sum_probs=170.3
Q ss_pred CCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC----HHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 4 NDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS----EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~----~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+.+|+..++.+++||+||||+.++ ||+||+++++ .+++..+.....+..+.+||||||+| .|++++++.|++
T Consensus 128 ~~~~e~~~~~~~~~~PvVVKP~~~s-ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~Svd~~~dg~- 204 (435)
T PRK06395 128 FSEKDAARDYITSMKDVAVKPIGLT-GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFSLQAFSDGK- 204 (435)
T ss_pred CChHHHHHHHHhhCCCEEEEeCCCC-CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEEEEEEEcCC-
Confidence 4667888888888999999997765 9999999954 33433333333233356999999997 899999998643
Q ss_pred eEEEEeeeeeEEec--Ce------EEEEEe-----CCCCCHHHHHHHHHHHHHHHHhcC-----cceEEEEEEEEeCCCc
Q 013661 80 SILCYPVVETIHKE--NI------CHIVKA-----PAAVPWKISELATDVAHKAVSSLE-----GAGIFAVELFWTNNGQ 141 (438)
Q Consensus 80 ~~~~~~~~e~~~~~--g~------~~~~~~-----p~~l~~~~~~~i~~~a~~i~~~lg-----~~G~~~ve~~~~~~g~ 141 (438)
.++.++..++..+. |+ .++++. +..++++..+++.+++.+++++|+ ++|++++||+++++|
T Consensus 205 ~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g- 283 (435)
T PRK06395 205 HLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG- 283 (435)
T ss_pred eEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-
Confidence 56677776554432 11 123232 223899999999999999999998 789999999999666
Q ss_pred EEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCC-CCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCC
Q 013661 142 ILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG 219 (438)
Q Consensus 142 ~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~ 219 (438)
+||||+|+|+|+++..... ....|+++..++.+.| ++.. .......++ ..++...+....+.+...........++
T Consensus 284 p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~~~~~~~~~~~-~~~l~~~gYp~~~~~g~i~~~~~~~~~~ 361 (435)
T PRK06395 284 VKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNGSIKFERKATV-LKYIVPPGYGENPSPGRIKIDKTIFDSN 361 (435)
T ss_pred cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCCCceecCCCEE-EEEEecCCCCCCCCCCceeccccccCCC
Confidence 9999999999988664433 3468999988888888 5432 222223333 3444443322222210000101112244
Q ss_pred cEEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 220 ATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 220 ~~~~~~~~-----~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
+.+...+. ....+++|+|+|++.|+|++||.++++++++.|+
T Consensus 362 ~~~~~~~~~~~~~~~~s~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~ 408 (435)
T PRK06395 362 SDVYYASVSGTLNDVKTSGSRSLAIIAKGDSIPEASEKVDSDLNAVH 408 (435)
T ss_pred CEEEEeeccccCCCeEECCCcEEEEEEEcCCHHHHHHHHHHHHhccC
Confidence 44432211 1223489999999999999999999999999875
No 43
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.3e-24 Score=223.00 Aligned_cols=248 Identities=17% Similarity=0.158 Sum_probs=170.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+.+.+++.++++++|||+||||..++ ||+|+++++|++|+.++++.+.. ..+.+||||||+| +|+++++++
T Consensus 122 ~~~~~~~~~~~~~~~~~P~VvKP~~~~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~ 199 (420)
T PRK00885 122 TFTDAEEALAYLDEKGAPIVVKADGLA-AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFV 199 (420)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCCCC-CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEE
Confidence 357889999999999999999997665 89999999999999999987642 2356999999997 999999998
Q ss_pred cCCCeEEEEeeeeeEEec--C------eEEEEEeCCC-CCHHHHHHHHH-HHHHHHHhc---C--cceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHKE--N------ICHIVKAPAA-VPWKISELATD-VAHKAVSSL---E--GAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g------~~~~~~~p~~-l~~~~~~~i~~-~a~~i~~~l---g--~~G~~~ve~~~~~~g 140 (438)
|+ +.+..++..+...+. + ..+.++.|++ ++++..+++.+ ++.+++++| | ++|++|+||+++++|
T Consensus 200 ~g-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g 278 (420)
T PRK00885 200 DG-ENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG 278 (420)
T ss_pred CC-CceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC
Confidence 64 466666665443221 1 1123456776 88887777765 666665543 4 579999999999776
Q ss_pred cEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCC-CCCCCCceEEEEeecCC-ccCC-----Ccchhhhchh
Q 013661 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEA-EGER-----GFYLAHQLIG 212 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~-~~~~~~~~~~~~~~~~~-~~~~-----~~~p~~~~~~ 212 (438)
+||+|+|||+|++++.... ..+.|+++.+++.+.|..... .......++ ..+++.. .+.. .+. +++
T Consensus 279 -~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~~~a~-~~~~~~~gy~~~~~~~~~i~----~~~ 352 (420)
T PRK00885 279 -PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLDEVELEWDDRAAV-GVVLAAKGYPGDYRKGDVIT----GLE 352 (420)
T ss_pred -cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCCCCCceECCCcEE-EEEEeCCCCCCCCCCCCEee----ccc
Confidence 7999999999987665544 345799999998888865432 111222333 3323221 1110 011 221
Q ss_pred hhhccCCcEEEEecc------ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 213 KALSIPGATVHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 213 ~~~~~p~~~~~~~~~------~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+. .++.+ ++.+ .....++|+++|++.|+|.+||.++++++++.|..
T Consensus 353 ~~---~~~~~-~~~~~~~~~~~~~~~g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~ 404 (420)
T PRK00885 353 AA---DADKV-FHAGTKLEDGKLVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDF 404 (420)
T ss_pred cc---CCCEE-EECceeccCCeEEEeCCEEEEEEEecCCHHHHHHHHHHHHhccCC
Confidence 10 11111 1111 11223689999999999999999999999998864
No 44
>PRK07206 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-24 Score=222.51 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=177.3
Q ss_pred cCCHHHHHHHHHhhCC---cEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC-------CCCcEEEeeccCCCeEEEEE
Q 013661 3 VNDLESARRAGKQFGY---PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-------FDRGLYVEKWAPFVKELAVI 72 (438)
Q Consensus 3 v~s~ee~~~~~~~igy---PvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~-------~~~~~lvEe~I~g~~e~sv~ 72 (438)
+.+.+|+.++++++|| |+||||..++ ||+|+++|+|.+|++++++.+.. ..+.++|||||+| .|++++
T Consensus 129 ~~~~~e~~~~~~~~g~~~~P~VvKP~~g~-gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~ 206 (416)
T PRK07206 129 TADWEEAEAWLRENGLIDRPVVIKPLESA-GSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVN 206 (416)
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEeCCCCC-CCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEE
Confidence 5688999999999998 9999998765 89999999999999999887632 1246999999997 999999
Q ss_pred EEEcCCCeEEEEeeeeeEE---ecCeEEEEE-eCCCCCHHHHHHHHHHHHHHHHhcCcc-eEEEEEEEEeCCCcEEEEEE
Q 013661 73 VVRGRDKSILCYPVVETIH---KENICHIVK-APAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEV 147 (438)
Q Consensus 73 ~~~d~~G~~~~~~~~e~~~---~~g~~~~~~-~p~~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~~g~~~viEi 147 (438)
++. .+|++.......... ..+...... ...+.+.+..+++.+++.+++++||+. |++|+||+++++| +|++||
T Consensus 207 ~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEi 284 (416)
T PRK07206 207 FVS-LDGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEI 284 (416)
T ss_pred EEE-ECCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEE
Confidence 986 467766544332111 112111111 112245678889999999999999995 9999999999777 789999
Q ss_pred cCCCCCCCCc--eeeeccCcHHHHHHHHHhCCCCCCCC----CC-CCceEEEEeecCCccC-CCcchhhhchhhhhccCC
Q 013661 148 APRPHNSGHH--TIESCYTSQFEQHMRAVVGLPLGDPS----MK-TPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPG 219 (438)
Q Consensus 148 NpR~~~sg~~--~~~~~~~~~~~~~~~~~~G~~l~~~~----~~-~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~ 219 (438)
|||++++... +..++|+|+++.+++.++|.+..... .. ........+.+...+. ..+. +.+++..+|+
T Consensus 285 n~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~----g~~~~~~~p~ 360 (416)
T PRK07206 285 GARLDGGLHPDVARLATGDSQLDATVESLADPDVFRETLREGYRLKAHVFNVFLISPAAGVFSNVE----FLEEIQKLPS 360 (416)
T ss_pred CCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccccCCCcChhhceEEEEEecCCCceEeCCc----cHHHHHhCCc
Confidence 9999975543 34578999999999999998653211 11 1122223333433332 2344 6667777888
Q ss_pred c-EEEEeccc--cccC----CceeEEEEEEcCCHHHHHHHHHHHhh
Q 013661 220 A-TVHWYDKP--EMRQ----QRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 220 ~-~~~~~~~~--~~~~----~~~~G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
+ ++.++.++ .+.+ .++.|+|+..++|.+|+....++...
T Consensus 361 v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~~ 406 (416)
T PRK07206 361 FKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKEQLWQDYEKIRK 406 (416)
T ss_pred hhheEEecCCCCCccCceecCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 7 34443322 2221 47899999999999999998887765
No 45
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.93 E-value=2e-24 Score=239.68 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=183.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC-CCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~-~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
.+++.+++.+++++++||+||||..++ ||+|+++|+|.+|+.++++.+.. ..+.++|||||+| .||+++++.+ +|+
T Consensus 127 ~v~~~~e~~~~~~~~~~PvVVKP~~g~-gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G-~E~sVe~i~~-~g~ 203 (887)
T PRK02186 127 ALALRAVALDALDGLTYPVVVKPRMGS-GSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEG-DEYSVETLTV-ARG 203 (887)
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccC-CcEEEEEEEE-CCc
Confidence 357888999999999999999998875 99999999999999999877642 2356999999997 9999999986 445
Q ss_pred EEEEeeeeeEEecC---eEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcc-eEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013661 81 ILCYPVVETIHKEN---ICHIVKAPAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 81 ~~~~~~~e~~~~~g---~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~~g~~~viEiNpR~~~sg~ 156 (438)
+.+..+.+...... ...+...|+.++++..+++.+++.+++++||+. |++|+||+++++| +||+|||||++++..
T Consensus 204 ~~i~~i~~k~~~~~~~~ve~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i 282 (887)
T PRK02186 204 HQVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMI 282 (887)
T ss_pred EEEEEEEeeecCCCCCeEEeccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccH
Confidence 55555543221111 112335788899999999999999999999996 9999999999654 999999999997432
Q ss_pred --ceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccC-CCcchhhhchh-hhhccCCcEEEEeccc--cc
Q 013661 157 --HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIG-KALSIPGATVHWYDKP--EM 230 (438)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~~~~~p~~~~~~~~~~--~~ 230 (438)
.+..++|+|+++.+++.++|.++.......+.+....+++...+. ..+. ..+ .....|.+.+.++.++ .+
T Consensus 283 ~~li~~a~Gvd~~~~~i~~~lG~~~~~~~~~~~~~ai~~~~~~~~G~i~~i~----~~~~~~~~~~~~~~~~~~~~G~~v 358 (887)
T PRK02186 283 PVLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRFVLPARSGVLRGLL----FLPDDIAARPELRFHPLKQPGDAL 358 (887)
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCCCCCCCCCCeEEEEEEecCCCceEEecc----cchhhcccCCeEEEEEecCCCCEe
Confidence 234467999999999999999886544333333333334433331 1111 111 1223444443333222 11
Q ss_pred ----cCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 231 ----RQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 231 ----~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
...+++|+|++.|+|.+++..++.++.+.+..
T Consensus 359 ~~~~~~~~~~g~vi~~g~~~~e~~~~~~~~~~~l~~ 394 (887)
T PRK02186 359 RLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSI 394 (887)
T ss_pred cCCCCCCCccEEEEEEcCCHHHHHHHHHHHHhcCEE
Confidence 12579999999999999999999999987643
No 46
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=1.8e-23 Score=211.31 Aligned_cols=248 Identities=12% Similarity=0.088 Sum_probs=169.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+++.+++.++++++|||+||||..++ +|+||++++|.+|+.++++.+. ...+.+||||||+| .|+++.++.+++ .
T Consensus 88 ~~~~~ea~~~~~~~g~PvVvKp~~~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~ 164 (379)
T PRK13790 88 VERKKDALTYIENCELPVVVKKDGLA-AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG-EEFSLMTFVNGD-L 164 (379)
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC-ceEEEEEEeeCC-E
Confidence 56788999999999999999998765 8999999999999999998764 22346999999997 999999998644 2
Q ss_pred EEEE-eee-eeEE--e------cCeEEEEEeCCC-CCHHHHHHH-HHHHHHHHHhc---C--cceEEEEEEEEeCCCcEE
Q 013661 81 ILCY-PVV-ETIH--K------ENICHIVKAPAA-VPWKISELA-TDVAHKAVSSL---E--GAGIFAVELFWTNNGQIL 143 (438)
Q Consensus 81 ~~~~-~~~-e~~~--~------~g~~~~~~~p~~-l~~~~~~~i-~~~a~~i~~~l---g--~~G~~~ve~~~~~~g~~~ 143 (438)
.+.+ +.. .+.. . .|. +..+.|.+ ++++..+++ .+++.+++++| | |.|++++||+++++| +|
T Consensus 165 ~~~~~~~~~~~kr~~~~d~g~~tgg-~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~~ 242 (379)
T PRK13790 165 AVPFDCIAQDHKRAFDHDEGPNTGG-MGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-PK 242 (379)
T ss_pred EEecccccccccccccCCCCCcCCC-CceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eE
Confidence 2222 222 1110 1 121 33445654 788776666 67778877777 4 479999999999766 99
Q ss_pred EEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchh-hhhccCCcE
Q 013661 144 LNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG-KALSIPGAT 221 (438)
Q Consensus 144 viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~p~~~ 221 (438)
|+|+|+|+|++...... .+++|+++.+++.+.|.++.... ....++...+.+...|. .+.. +.. ......+ .
T Consensus 243 viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~-~~~~~~~v~~~s~gyp~-~~~~---~~~i~~~~~~~-~ 316 (379)
T PRK13790 243 VIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKW-KNESIVGVMLASKGYPD-AYEK---GHKVSGFDLNE-N 316 (379)
T ss_pred EEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeE-cCCCEEEEEEccCCCCC-CCCC---CCeeeecCCCC-e
Confidence 99999999986554433 45799999999999998765322 22334433333322221 1110 100 0000111 1
Q ss_pred EEEeccc------cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 222 VHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 222 ~~~~~~~------~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+ ++++. -...+.|++.|++.|+|++||.++++++++.++.
T Consensus 317 ~-~~~~~~~~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~ 362 (379)
T PRK13790 317 Y-FVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQS 362 (379)
T ss_pred E-EECCccccCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 1 12211 1122689999999999999999999999998875
No 47
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=2.9e-23 Score=212.58 Aligned_cols=256 Identities=15% Similarity=0.139 Sum_probs=173.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..+ ++|+||+++++.+|+.+++..+. .....+||||||+| .|+++.+++
T Consensus 122 ~~~~~~e~~~~~~~~g~PvVVKp~~~-~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv~~~~ 199 (434)
T PLN02257 122 TFTDPAAAKKYIKEQGAPIVVKADGL-AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASFFALV 199 (434)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEcCCC-CCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEEEEEE
Confidence 35788999999999999999999755 49999999999999999987752 22356999999997 799999988
Q ss_pred cCCCeEEEEeeee-eE--Ee------cCeEEEEEeCCC-CCHHHHHHH-HHHHHHHHH---hc--CcceEEEEEEEEe-C
Q 013661 76 GRDKSILCYPVVE-TI--HK------ENICHIVKAPAA-VPWKISELA-TDVAHKAVS---SL--EGAGIFAVELFWT-N 138 (438)
Q Consensus 76 d~~G~~~~~~~~e-~~--~~------~g~~~~~~~p~~-l~~~~~~~i-~~~a~~i~~---~l--g~~G~~~ve~~~~-~ 138 (438)
|++ .++.++... |. +. .| .+..+.|++ +++++.+++ ++++.++++ +. .|+|++++||+++ +
T Consensus 200 dG~-~~~pl~~~~dhkr~~d~d~g~ntg-gmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~ 277 (434)
T PLN02257 200 DGE-NAIPLESAQDHKRVGDGDTGPNTG-GMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKK 277 (434)
T ss_pred CCC-cEEEEEeeeecccccCCCCCCCCC-CCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcC
Confidence 743 344333222 21 00 12 234455665 888888875 455555533 44 4679999999998 6
Q ss_pred CCcEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCC-CCCCCCCceEEEEeecCCccCCCcchh--hhchhhh
Q 013661 139 NGQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLG-DPSMKTPAAIMYNLLGEAEGERGFYLA--HQLIGKA 214 (438)
Q Consensus 139 ~g~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~ 214 (438)
+|.+||+|+|+|+|.+.+.... .++.|+++.+++.+.|.--. ........++ +.+++..+....+... ..++++.
T Consensus 278 ~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~~~~~~~~~~av-~vv~a~~gYp~~~~~g~~i~~~~~~ 356 (434)
T PLN02257 278 SGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSGVSLTWSPDSAM-VVVMASNGYPGSYKKGTVIKNLDEA 356 (434)
T ss_pred CCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCCCCCceECCCceE-EEEEcCCCCCCCCCCCCEeeCCccc
Confidence 7789999999999987776655 46899999999999985211 1222233333 4444443222222110 0123221
Q ss_pred hc-cCCcEEEEecc------ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 215 LS-IPGATVHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 215 ~~-~p~~~~~~~~~------~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
.. .+++.+...+. .-...+.|+..|++.|+|++||.++++++++.|+.
T Consensus 357 ~~~~~~~~v~~a~~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~ 411 (434)
T PLN02257 357 EAVAPGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDW 411 (434)
T ss_pred cccCCCCEEEECCceEccCCEEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 11 24544322111 11223789999999999999999999999998875
No 48
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.93 E-value=2.4e-23 Score=213.92 Aligned_cols=254 Identities=18% Similarity=0.184 Sum_probs=168.4
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-----CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++||| +|+||..++ ||+|+++++|.+|+.++++.+... .+.+||||||+| .|++++++.
T Consensus 124 ~~~~~~~~~~~~~~~g~P~~VvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 201 (423)
T TIGR00877 124 VFTDPEEALSYIQEKGAPAIVVKADGLA-AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAFV 201 (423)
T ss_pred EECCHHHHHHHHHhcCCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEEE
Confidence 357889999999999999 999997664 899999999999999988775321 246999999997 899999998
Q ss_pred cCCCeEEEEeeeeeEEec--Ce------EEEEEeCCC-CCHHHHHHH-HHHHHHHHHhc---C--cceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELA-TDVAHKAVSSL---E--GAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g~------~~~~~~p~~-l~~~~~~~i-~~~a~~i~~~l---g--~~G~~~ve~~~~~~g 140 (438)
|+ +.+..++..+...+. ++ .+..+.|.+ ++++...++ .+++.++.++| | ++|++|+||+++++|
T Consensus 202 dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g 280 (423)
T TIGR00877 202 DG-KTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG 280 (423)
T ss_pred cC-CeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC
Confidence 74 456666665443321 10 123355654 777665553 34444444444 4 689999999999777
Q ss_pred cEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCC--CCCCCCceEEEEeecCCccCCCcch--hhhchhhhh
Q 013661 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGD--PSMKTPAAIMYNLLGEAEGERGFYL--AHQLIGKAL 215 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~ 215 (438)
+||+|+|||+|++++.... ..+.|+++.+++.+.|. ++. .......++...+.+...+. .+.. ...+. +..
T Consensus 281 -~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~-l~~~~~~~~~~~a~~~~~~~~~yp~-~~~~~~~i~~~-~~~ 356 (423)
T TIGR00877 281 -PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGK-LDEVELRFDNRAAVTVVLASEGYPG-DYRKGDPITGE-PLI 356 (423)
T ss_pred -cEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEecCCcCC-CCCCCCEeeCC-ccc
Confidence 9999999999987776544 34589999999888885 222 22122223322222222121 0100 00011 111
Q ss_pred ccCCcEEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 216 SIPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 216 ~~p~~~~~~~~~-----~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
..+++++...+. .....++|+|+|++.|+|.++|..+++++.+++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~ 408 (423)
T TIGR00877 357 EAEGVKVFHAGTKQDNGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKF 408 (423)
T ss_pred ccCCCEEEECceeccCCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 224443322110 01133799999999999999999999999998874
No 49
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-23 Score=225.42 Aligned_cols=255 Identities=18% Similarity=0.258 Sum_probs=207.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.+.|.+|..++++.+|||+|+|.+-|| ||+|++.|++.+|+...+++.. +.| +++.+...+.++++|+.+.|.
T Consensus 224 cv~~~eegLeaae~IGfPvMIKASEGG-GGKGIRkv~n~ddF~~lf~qv~~EvPGSP--IFlMK~a~~ARHlEVQlLaDq 300 (2196)
T KOG0368|consen 224 CVRNVEEGLEAAEKIGFPVMIKASEGG-GGKGIRKVENEDDFKALFKQVQNEVPGSP--IFLMKLADQARHLEVQLLADQ 300 (2196)
T ss_pred hcCCHHHHHHHHHhcCCceEEEeccCC-CCcceeeccchHHHHHHHHHHHhhCCCCc--eeeeecccCcceeeeehhhhh
Confidence 368999999999999999999999988 9999999999999999998753 445 999999999999999999999
Q ss_pred CCeEE-EEeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEcCCCCCC
Q 013661 78 DKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHNS 154 (438)
Q Consensus 78 ~G~~~-~~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~s 154 (438)
.|++. .+++.|.+++.++...+..|+. .+.++.+++++.|.++++..||.+...||+++.+ +|++||+|.|||++.
T Consensus 301 YGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQV- 379 (2196)
T KOG0368|consen 301 YGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQV- 379 (2196)
T ss_pred cCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccccc-
Confidence 99865 5777799999988777778888 6889999999999999999999999999999987 699999999999997
Q ss_pred CCceee-eccCcHHHHHHHHHhCCCCCCCCC------------------------CCCceEEEEeecCCccCCCcchhhh
Q 013661 155 GHHTIE-SCYTSQFEQHMRAVVGLPLGDPSM------------------------KTPAAIMYNLLGEAEGERGFYLAHQ 209 (438)
Q Consensus 155 g~~~~~-~~~~~~~~~~~~~~~G~~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~p~~~ 209 (438)
.|.+.+ .+++|+...+++.++|+||...+. ..++++.+|++.+ +|...|.|.++
T Consensus 380 EHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsE-dPddgFkPSsG 458 (2196)
T KOG0368|consen 380 EHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSE-DPDDGFKPSSG 458 (2196)
T ss_pred cCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeecc-CCCCCcCCCCC
Confidence 566555 567999999999999999765331 1245677888776 56667998666
Q ss_pred chhhhhccC---C-cE-EEEeccccc-c-CCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 210 LIGKALSIP---G-AT-VHWYDKPEM-R-QQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 210 ~~~~~~~~p---~-~~-~~~~~~~~~-~-~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
.+.+. +++ + |. +.+-.+..+ . .++-.|||.+.|.|++||.+.+--+++++.+
T Consensus 459 ~v~eL-nFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsI 517 (2196)
T KOG0368|consen 459 TVQEL-NFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSI 517 (2196)
T ss_pred eeEEe-ccCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheee
Confidence 66553 222 2 22 222111111 1 1577899999999999999999999887654
No 50
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.90 E-value=1.5e-22 Score=205.70 Aligned_cols=176 Identities=17% Similarity=0.176 Sum_probs=140.6
Q ss_pred cCCHHHHHHHHHh--hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARRAGKQ--FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~--igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+.+.+++.+.++. +||||||||..++ +|+|+++|++++||++++..+... ..++||+||.| +|++|+++.+.+|.
T Consensus 165 ~~~~eel~~~~~~~~IGyPvVVKP~~GG-SS~GV~~Vkn~eELe~a~~~~~~~-~~viVEe~I~G-rEitVev~vd~dG~ 241 (493)
T PRK06524 165 VDSYDELSALAHGAGLGDDLVVQTPYGD-SGSTTFFVRGQRDWDKYAGGIVGQ-PEIKVMKRIRN-VEVCIEACVTRHGT 241 (493)
T ss_pred CCCHHHHHHHHHhccCCCcEEEEECCCC-CCcCEEEeCCHHHHHHHHHHhcCC-CCEEEEeccCc-EEEEEEEEEeCCCC
Confidence 3566777777765 9999999998776 899999999999999998886542 45999999996 99999999988887
Q ss_pred EEEEeee------eeE-EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhc---CcceEEEEEEEEeC-CCcEEEEEEcC
Q 013661 81 ILCYPVV------ETI-HKENICHIVKAPAAVPWKISELATDVAHKAVSSL---EGAGIFAVELFWTN-NGQILLNEVAP 149 (438)
Q Consensus 81 ~~~~~~~------e~~-~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~l---g~~G~~~ve~~~~~-~g~~~viEiNp 149 (438)
+...... +.. +++|.+...+.|+.+++++.+++++++.++.++| |+.|+++|||++++ +|++||+||||
T Consensus 242 Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 242 VIGPAMTSLVGYPELTPYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EEeccccccccceEEEEccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 6432111 211 3445544456799999999999999999999998 89999999999985 58899999999
Q ss_pred CCCCCCCceee----eccCcHHHHHHHHHhCCCCCC
Q 013661 150 RPHNSGHHTIE----SCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 150 R~~~sg~~~~~----~~~~~~~~~~~~~~~G~~l~~ 181 (438)
|+++....+.. ..+.+.+..++++.+|+|+..
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~ 357 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYEL 357 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCcee
Confidence 99973333333 135788999999999999764
No 51
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=187.91 Aligned_cols=126 Identities=31% Similarity=0.474 Sum_probs=114.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCc----EEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~----~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
..+.+++++.++||.|+++++..+++.+|++ ||+.|++.|| +..-+++.+.++.+++|++|||...||++++
T Consensus 116 ~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHR----Ll~~l~r~~~~~~~~lIVvAGMEGaLPsvva 191 (254)
T COG1691 116 KGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHR----LLSALKRLKIEDADVLIVVAGMEGALPSVVA 191 (254)
T ss_pred cCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHh----hhhHHHHHHhhCCCeEEEEcccccchHHHHH
Confidence 3578889999999999999999999999999 7899999999 5654555567789999999999999999999
Q ss_pred CCCCCceEeccCC---CCCCCChhhHHHhhhC-CCCCceEEEEeCCcchHHHHHHHHHcC
Q 013661 345 ARTPLPVIGVPVR---ASALDGLDSLLSIVQM-PRGVPVATVAINNATNAGLLAVRMLGF 400 (438)
Q Consensus 345 ~~~~~pVi~~p~~---~~~~~g~~~l~s~~~~-~~g~p~~tv~~~~~~~Aa~~a~~il~~ 400 (438)
|+.+.|||++|++ +..++|..+|++|+|. .+| +.+|||||+++||.+|+||++.
T Consensus 192 gLvD~PVIavPTsVGYG~g~gGiaaLltMLqSCspG--v~VVNIdNGfGAa~~A~~I~r~ 249 (254)
T COG1691 192 GLVDVPVIAVPTSVGYGAGGGGIAALLTMLQSCSPG--VGVVNIDNGFGAAVLAVQILRR 249 (254)
T ss_pred hccCCCeEecccccccCcCCccHHHHHHHHHhcCCC--eEEEEccCchHHHHHHHHHHHH
Confidence 9999999999998 4568899999999999 667 8899999999999999999764
No 52
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.89 E-value=5.5e-24 Score=221.06 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=199.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.+++.|++.++++++|||++++..+.- ||.|--.++|++||.+....+....++++||+-+.|++|+++++++|..+++
T Consensus 518 a~~sie~al~aae~l~ypvivRaayal-gglgSgfa~n~eeL~~l~~~a~a~s~QilvekSlkGwkevEyevvrDa~~nc 596 (1435)
T KOG0370|consen 518 AVSTIEEALEAAERLGYPVIVRAAYAL-GGLGSGFANNEEELQDLAAQALALSPQILVEKSLKGWKEVEYEVVRDAYDNC 596 (1435)
T ss_pred hHhHHHHHHHHHHhcCcHHHHHHHHHh-cCccccccccHHHHHHHHhhccccCceeeehhhhccccceEEEEEeccccch
Confidence 357899999999999999999998732 5777779999999999888887777889999999999999999999999888
Q ss_pred EEEeeeeeEEecCeE---EEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC-CcEEEEEEcCCCCCCCC
Q 013661 82 LCYPVVETIHKENIC---HIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNSGH 156 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~---~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~sg~ 156 (438)
+....+|++..-|.. +..+.|+. |+++..+.++..+.+++++||..|-+|+|+.+++. -++++||+|+|+++|..
T Consensus 597 iTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssa 676 (1435)
T KOG0370|consen 597 ITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSA 676 (1435)
T ss_pred hhhcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhh
Confidence 877777877665443 33467776 99999999999999999999999999999999986 46899999999999999
Q ss_pred ceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchh-hhhccCCcEEEEeccc--ccc-C
Q 013661 157 HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG-KALSIPGATVHWYDKP--EMR-Q 232 (438)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~p~~~~~~~~~~--~~~-~ 232 (438)
.-++++|.++--...+.++|.|+++.+......- ...|+| .++ .+.+.|.||...|... +.. .
T Consensus 677 LASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T----------~AcFEp---slDY~v~KiprWDl~kf~~vs~~igss 743 (1435)
T KOG0370|consen 677 LASKATGYPLAYTAAKLALGIPLPELKNSVTKTT----------TACFEP---SLDYCVVKIPRWDLSKFQRVSTEIGSS 743 (1435)
T ss_pred hhccCccCcHHHHHHHHhcCcccccCCcccccce----------ecccCc---chhheeeecccccHHHHHHHHHhhchh
Confidence 9999999999999999999999999765221110 112444 444 2467888875443321 121 2
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHHhh
Q 013661 233 QRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 233 ~~~~G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
|+++|+||++|++||||++|+.+..+
T Consensus 744 mKSvgEvm~iGR~feea~QKalr~vd 769 (1435)
T KOG0370|consen 744 MKSVGEVMAIGRTFEEAFQKALRMVD 769 (1435)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcC
Confidence 78899999999999999999999876
No 53
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.89 E-value=5.9e-21 Score=187.45 Aligned_cols=254 Identities=17% Similarity=0.162 Sum_probs=177.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
++++.+++.+++++.|.|+||||.... +|+||.++.+.+|..++...+.. ...+++||||++| .|+|+.+++
T Consensus 123 ~f~~~e~a~ayi~~~g~piVVKadGLa-aGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~ 200 (428)
T COG0151 123 VFTDPEEAKAYIDEKGAPIVVKADGLA-AGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFV 200 (428)
T ss_pred ccCCHHHHHHHHHHcCCCEEEeccccc-CCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccc-eEEEEEEEE
Confidence 356899999999999999999996665 89999999999999998876532 1256999999997 999999999
Q ss_pred cCCCeEEEEeeeeeEEec--Ce------EEEEEeCCC-CCHHHHHHHH-HHHHHHHHhc-----CcceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g~------~~~~~~p~~-l~~~~~~~i~-~~a~~i~~~l-----g~~G~~~ve~~~~~~g 140 (438)
|++ ++..+|..+...+. |+ .+++++|++ +++++.+++. ++.+..++.| .|+|++..+|+++++|
T Consensus 201 DG~-~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G 279 (428)
T COG0151 201 DGK-TVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG 279 (428)
T ss_pred cCC-eEEECccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC
Confidence 865 67777777544432 21 266778888 8888888776 7777777777 4789999999999988
Q ss_pred cEEEEEEcCCCCCCCCceeeecc-CcHHHHHHHHHhCCCCCCCC---CCCCceEEEEeecCCccCCCcchhh-h-chhhh
Q 013661 141 QILLNEVAPRPHNSGHHTIESCY-TSQFEQHMRAVVGLPLGDPS---MKTPAAIMYNLLGEAEGERGFYLAH-Q-LIGKA 214 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~~~~-~~~~~~~~~~~~G~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~-~-~~~~~ 214 (438)
++|||.|.|+|.+........- .|+.+.....+.| .|.... .+...++ ..+++..+......+.. . +.++.
T Consensus 280 -PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g-~L~~~~~~~~~~~a~v-~vvlA~~GYP~~~~kG~~I~~~~~~ 356 (428)
T COG0151 280 -PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDG-KLDEVEILFWDKGAAV-GVVLAAEGYPGDPEKGDVITGDEEA 356 (428)
T ss_pred -cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhC-CccccchhhccCCceE-EEEEecCCCCCCCCCCCEEecChhh
Confidence 9999999999988776655443 5666666655555 343322 1122333 33344333222222110 0 11111
Q ss_pred hccCCcEEEEeccc------cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 215 LSIPGATVHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 215 ~~~p~~~~~~~~~~------~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
.. .+..+...+.. -+.++.|.-.|++.|+|.+||.+++++++..+++
T Consensus 357 ~~-~~~~vf~Agv~~~~~~~lvt~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~ 409 (428)
T COG0151 357 EE-EGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKIHF 409 (428)
T ss_pred cc-cCcEEEEeeEeccCCceEEecCCeEEEEEecCCCHHHHHHHHHHHHhhcCC
Confidence 11 13444332211 2234788889999999999999999999998875
No 54
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.88 E-value=1.2e-21 Score=177.70 Aligned_cols=147 Identities=22% Similarity=0.330 Sum_probs=110.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC----CCcEEEeeccCCCeEEEEEEEEcC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF----DRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~----~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.+++.+++.++++.++||+||||..++ ||+|+++++|++|+.++++.+... ...+++||||+| .|++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~p~vvKp~~g~-gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~- 100 (184)
T PF13535_consen 24 IVDSEEELRAFAEDLGFPFVVKPVDGS-GSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD- 100 (184)
T ss_dssp EECSHHHHHHHHHHSSSSEEEEESS-S-TTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-
T ss_pred EECCHHHHHHHHHHcCCCEEEEcCccc-cCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-
Confidence 467899999999999999999998875 899999999999999998876321 245999999996 9999999987
Q ss_pred CCeEEEEeeeeeEEecC------eEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCc-ceEEEEEEEEeCCCcEEEEEEcCC
Q 013661 78 DKSILCYPVVETIHKEN------ICHIVKAPAAVPWKISELATDVAHKAVSSLEG-AGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g------~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~-~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
+|+++.....+...... .......+. +....+++++.+.++++++|+ .|++|+||+++++|++|++|+|||
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~R 178 (184)
T PF13535_consen 101 DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS--EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINPR 178 (184)
T ss_dssp TTEEEEEEEEEEEEEETCCCSSSEEEEEEES----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEESS
T ss_pred cceEEEEEEEEEecccccccccceeeeeeccc--ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECcc
Confidence 88887666654444321 122222333 333448899999999999999 799999999999998999999999
Q ss_pred CCC
Q 013661 151 PHN 153 (438)
Q Consensus 151 ~~~ 153 (438)
++|
T Consensus 179 ~~G 181 (184)
T PF13535_consen 179 FGG 181 (184)
T ss_dssp --S
T ss_pred CCC
Confidence 996
No 55
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.88 E-value=1.8e-20 Score=193.86 Aligned_cols=251 Identities=13% Similarity=0.095 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHH-----HHHHH----HHhc-------CCCCcEEEeeccCCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEE-----LSSAI----TALG-------GFDRGLYVEKWAPFV 66 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~e-----l~~~~----~~~~-------~~~~~~lvEe~I~g~ 66 (438)
+++.+++.++++.. +|+||||..++ +|+||.+|+|.++ +.+++ +.+. .....+||||||+|
T Consensus 131 ~~~~~ea~~~~~~~-~PvVVKP~~~a-ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G- 207 (486)
T PRK05784 131 FYDVEEAAKFIEYG-GSVAIKPARQA-GGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG- 207 (486)
T ss_pred eCCHHHHHHHHhhc-CCEEEeeCCCC-CCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-
Confidence 46888999888665 69999997766 9999999999873 33333 3321 22356999999997
Q ss_pred eEEEEEEEEcCCCeEEEEeeeeeEEe--cC------eEEEEEeC----CC-CCHHHHHHHHHHHHHHHHhcC------cc
Q 013661 67 KELAVIVVRGRDKSILCYPVVETIHK--EN------ICHIVKAP----AA-VPWKISELATDVAHKAVSSLE------GA 127 (438)
Q Consensus 67 ~e~sv~~~~d~~G~~~~~~~~e~~~~--~g------~~~~~~~p----~~-l~~~~~~~i~~~a~~i~~~lg------~~ 127 (438)
.|+++++++|++ .++.++..+...+ .+ ..++.+.| .+ ++++..+++.+++.+++++|+ |+
T Consensus 208 ~E~SV~al~dG~-~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~ 286 (486)
T PRK05784 208 VEYTLQVLTDGE-TVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYV 286 (486)
T ss_pred eEEEEEEEECCC-eEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 999999998643 4454554432111 11 12344555 44 577777777788887776663 45
Q ss_pred eEEEEEEEEe-CCCcEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCC--CCCCCCceEEEEeecCCccCCC
Q 013661 128 GIFAVELFWT-NNGQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGD--PSMKTPAAIMYNLLGEAEGERG 203 (438)
Q Consensus 128 G~~~ve~~~~-~~g~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (438)
|++|+||+++ ++| ++|||+|+|+|++....+. ....|+++..++.+.|. |.. .......++ +.+++..+....
T Consensus 287 G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~-l~~~~~~~~~~~~~-~vv~as~gYp~~ 363 (486)
T PRK05784 287 GVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGK-LSKAKIKFNEEPSV-VKAIAPLGYPLS 363 (486)
T ss_pred EEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHHcCC-CCCCCeeecCCceE-EEEECCCCCCCc
Confidence 9999999999 766 8999999999976554322 24579999999999985 222 222223344 444444432211
Q ss_pred --cchh--hhchhhhhccCCcEEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcC
Q 013661 204 --FYLA--HQLIGKALSIPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKED 260 (438)
Q Consensus 204 --~~p~--~~~~~~~~~~p~~~~~~~~~-----~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i 260 (438)
+.+. ....++....++..+...+. .-...+.|+..|++.|+|++||.++++++++.|
T Consensus 364 ~~~~~g~~i~~~~~~~~~~~~~v~~ag~~~~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i 429 (486)
T PRK05784 364 RDLASGRRIVVDLDKIKEEGCLVFFGSVELEGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYV 429 (486)
T ss_pred ccCCCCCEEECCccccccCCCEEEECCceeeCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhc
Confidence 1110 00111100112322222111 112337899999999999999999999999998
No 56
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.88 E-value=5.5e-21 Score=176.45 Aligned_cols=141 Identities=23% Similarity=0.304 Sum_probs=114.7
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeee
Q 013661 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e 88 (438)
..+....++||++|||..+| +|.|+.+|+|.+||.++++.+...+..+||||||+| +|++|-++.+++ ....++.+
T Consensus 25 ~~~~~~~l~~P~~VKP~~~G-sS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~G-~E~tv~vl~~~~--~~~~~~~e 100 (203)
T PF07478_consen 25 IEKILEDLGFPLFVKPASEG-SSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFISG-REFTVGVLGNGE--PRVLPPVE 100 (203)
T ss_dssp HHHHHHHHSSSEEEEESSTS-TTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--SS-EEEEEEEEESSS--TEEEEEEE
T ss_pred HHHHHhhcCCCEEEEECCCC-ccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeecc-cceEEEEEecCC--cccCceEE
Confidence 35667899999999999887 899999999999999999998877778999999986 999999998544 44455554
Q ss_pred eEEec------------CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 89 TIHKE------------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 89 ~~~~~------------g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
..... +.......|+.+++++.++|++++.++.++||++|++++||+++++|++||+|+|+-||-
T Consensus 101 i~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGl 177 (203)
T PF07478_consen 101 IVFPSEFYDYEAKYQPADSETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGL 177 (203)
T ss_dssp EEESSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-
T ss_pred EEcCCCceehhheeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcccc
Confidence 33222 122445678999999999999999999999999999999999998899999999999984
No 57
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.87 E-value=5e-21 Score=190.51 Aligned_cols=157 Identities=26% Similarity=0.358 Sum_probs=123.4
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeee
Q 013661 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e 88 (438)
+..+.+++|||+||||..++ +|.|+.+|++.+||.++++.+...+..++||+||+| +|+++.++.+ ++++ .+..+
T Consensus 154 ~~~~~~~~~~P~vVKP~~~g-sS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~G-~E~~v~vl~~-~~~~--~~~~e 228 (333)
T PRK01966 154 LAEIEAKLGLPVFVKPANLG-SSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIKG-REIECAVLGN-DPKA--SVPGE 228 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcCC-EEEEEEEECC-CCeE--cccEE
Confidence 45567789999999998877 899999999999999999887665667999999996 9999999975 4442 22222
Q ss_pred eEE-----------ecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013661 89 TIH-----------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 89 ~~~-----------~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~ 157 (438)
... ..+. .....|+.+++++.+++++++.+++++||++|++++||+++++|++||+|||+|||.+.
T Consensus 229 i~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~-- 305 (333)
T PRK01966 229 IVKPDDFYDYEAKYLDGS-AELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFTP-- 305 (333)
T ss_pred EecCCceEcHHHccCCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCCc--
Confidence 111 1122 34457889999999999999999999999999999999999888999999999998532
Q ss_pred eeeeccCcHHHHHHHHHhCCCCC
Q 013661 158 TIESCYTSQFEQHMRAVVGLPLG 180 (438)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~G~~l~ 180 (438)
.+++..+.+. .|.++.
T Consensus 306 ------~s~~p~~~~~-~G~~~~ 321 (333)
T PRK01966 306 ------ISMYPKLWEA-SGLSYP 321 (333)
T ss_pred ------ccHHHHHHHH-cCCCHH
Confidence 3455544443 455543
No 58
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.87 E-value=1.8e-20 Score=185.91 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=132.2
Q ss_pred cCCHHHHHH--HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARR--AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~--~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+++.+++.+ +.++++||+|+||..++ +|+|+++++|.+|+.++++... .++|||||+| +|++++++++.+|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~P~viKP~~g~-~s~gv~~v~~~~el~~~~~~~~----~~lvqeyi~G-~e~~v~~~~~~~G~ 205 (326)
T PRK12767 132 PESLEDFKAALAKGELQFPLFVKPRDGS-ASIGVFKVNDKEELEFLLEYVP----NLIIQEFIEG-QEYTVDVLCDLNGE 205 (326)
T ss_pred ccCHHHHHhhhhcccCCCCEEEEeCCCC-CccCeEEeCCHHHHHHHHHhCC----CeEEEeccCC-ceEEEEEEEcCCCC
Confidence 457788877 55789999999997765 8999999999999999887643 4999999986 99999999987888
Q ss_pred EEEEeeeeeE-EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCcee
Q 013661 81 ILCYPVVETI-HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTI 159 (438)
Q Consensus 81 ~~~~~~~e~~-~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~ 159 (438)
++.+...+.. ...|........ . .+++.+++.+++++||++|++++||++++ |.+|++|+|||++++. ...
T Consensus 206 ~~~~~~~~~~~~~~g~~~~~~~~---~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~-~~~ 277 (326)
T PRK12767 206 VISIVPRKRIEVRAGETSKGVTV---K---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGY-PLS 277 (326)
T ss_pred EEEEEEeeeeeecCCceeEEEEc---C---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcc-hhh
Confidence 8766555443 223332221111 1 25688999999999999999999999986 7799999999999743 344
Q ss_pred eeccCcHHHHHHHHHhCCCCCCC
Q 013661 160 ESCYTSQFEQHMRAVVGLPLGDP 182 (438)
Q Consensus 160 ~~~~~~~~~~~~~~~~G~~l~~~ 182 (438)
..+|+|+.+.+++.++|.+++..
T Consensus 278 ~~~G~n~~~~~~~~~~g~~~~~~ 300 (326)
T PRK12767 278 YMAGANEPDWIIRNLLGGENEPI 300 (326)
T ss_pred HhhCCCHHHHHHHHHcCCCCCcc
Confidence 57899999999999999987644
No 59
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=1.5e-20 Score=188.53 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=116.7
Q ss_pred CHHHHHHH-HHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEE
Q 013661 5 DLESARRA-GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILC 83 (438)
Q Consensus 5 s~ee~~~~-~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~ 83 (438)
+.+++.+. .+.+|||++|||..+| +|.|+.+++|.+||.++++.+...+..+|||+||+| +|+++.++.+.. ...
T Consensus 158 ~~~~~~~~~~~~lg~PviVKP~~~G-sS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~G-rEi~v~Vlg~~~--~~v 233 (364)
T PRK14570 158 DKEGIKKDIKEVLGYPVIVKPAVLG-SSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIEA-REIECSVIGNEQ--IKI 233 (364)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcCC-EEEEEEEECCCC--ceE
Confidence 44555543 4679999999998877 799999999999999999988766667999999996 999999996533 334
Q ss_pred EeeeeeEEe--------------cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEc
Q 013661 84 YPVVETIHK--------------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVA 148 (438)
Q Consensus 84 ~~~~e~~~~--------------~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiN 148 (438)
++..|.... .+.......|+++++++.+++++++.+++++||++|++++||++++ +|++||+|+|
T Consensus 234 ~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvlEiN 313 (364)
T PRK14570 234 FTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEIN 313 (364)
T ss_pred eeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEEEee
Confidence 444432211 1222234568899999999999999999999999999999999986 4889999999
Q ss_pred CCCCC
Q 013661 149 PRPHN 153 (438)
Q Consensus 149 pR~~~ 153 (438)
++||-
T Consensus 314 t~PG~ 318 (364)
T PRK14570 314 TIPGF 318 (364)
T ss_pred CCCCC
Confidence 99985
No 60
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=1.3e-20 Score=188.40 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=117.3
Q ss_pred CHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC-C--eE
Q 013661 5 DLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD-K--SI 81 (438)
Q Consensus 5 s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~-G--~~ 81 (438)
+.+++.+..++++||+||||..+| +|.|+.+|+|.+||+++++.+...++.+||||||+| +|+++.++.+.+ | +.
T Consensus 159 ~~~~~~~~~~~l~~PvvVKP~~gg-sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~G-~E~sv~vi~~~~~g~~~~ 236 (347)
T PRK14572 159 SPRKTLLKLESLGFPQFLKPVEGG-SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLSG-TEVSCGVLERYRGGKRNP 236 (347)
T ss_pred ChHHHHHHHHhcCCCEEEecCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCccc-EEEEEEEEeCccCCCCCc
Confidence 344555556789999999998877 789999999999999999887555566999999996 999999996422 3 23
Q ss_pred EEEeeeeeEEecC----------eEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCC
Q 013661 82 LCYPVVETIHKEN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 82 ~~~~~~e~~~~~g----------~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
..+++.+....++ .......|+++++++.+++++++.+++++||++|++++||+++ +|++||+|||++|
T Consensus 237 ~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEiNt~P 315 (347)
T PRK14572 237 IALPATEIVPGGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILETNTLP 315 (347)
T ss_pred eecccEEEecCCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEeeeCCC
Confidence 4455544332111 0133457999999999999999999999999999999999997 5789999999999
Q ss_pred CCC
Q 013661 152 HNS 154 (438)
Q Consensus 152 ~~s 154 (438)
|.+
T Consensus 316 G~t 318 (347)
T PRK14572 316 GMT 318 (347)
T ss_pred CCC
Confidence 853
No 61
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.85 E-value=1.8e-20 Score=187.32 Aligned_cols=157 Identities=22% Similarity=0.357 Sum_probs=121.1
Q ss_pred HHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeee---
Q 013661 13 GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET--- 89 (438)
Q Consensus 13 ~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~--- 89 (438)
.+.++||+||||..+| +|+|+.+|+|.+||.++++.+...++.+|||+||+| +|+++.++.+.++ ....+..+.
T Consensus 161 ~~~l~~P~iVKP~~~g-sS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~sv~vl~~~~~-~~~~~~~~i~~~ 237 (343)
T PRK14568 161 AATLTYPVFVKPARSG-SSFGVSKVNSADELDYAIESARQYDSKVLIEEAVVG-SEVGCAVLGNGAD-LVVGEVDQIRLS 237 (343)
T ss_pred hhhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcCC-EEEEEEEEcCCCC-cceecceEEecC
Confidence 3578999999998877 789999999999999999887655567999999996 9999999865332 222111111
Q ss_pred --EEe--------cCe-EEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013661 90 --IHK--------ENI-CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 90 --~~~--------~g~-~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~ 158 (438)
++. .+. ....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||++||.+
T Consensus 238 ~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~llEINt~Pg~t---- 313 (343)
T PRK14568 238 HGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNTLPGFT---- 313 (343)
T ss_pred CCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEEEEEeeCCCCCC----
Confidence 110 111 12346789999999999999999999999999999999999988999999999999853
Q ss_pred eeeccCcHHHHHHHHHhCCCCCC
Q 013661 159 IESCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~G~~l~~ 181 (438)
..++|..+. .+.|+++++
T Consensus 314 ----~~S~~p~~~-~~~G~~~~~ 331 (343)
T PRK14568 314 ----SYSRYPRMM-AAAGIPLAE 331 (343)
T ss_pred ----ccCHHHHHH-HHcCCCHHH
Confidence 245666555 345766544
No 62
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=4.6e-20 Score=180.64 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=109.3
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCC-eEEEEeeeeeE
Q 013661 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK-SILCYPVVETI 90 (438)
Q Consensus 12 ~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G-~~~~~~~~e~~ 90 (438)
..+.++||+||||..+| +|.|+++|+|++||.++++.+... +.+|||+||+| +|+++.++.+... .+...+..+.+
T Consensus 125 ~~~~~~~P~vVKP~~gg-ss~Gv~~v~~~~eL~~a~~~~~~~-~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~ 201 (296)
T PRK14569 125 AEDEISFPVAVKPSSGG-SSIATFKVKSIQELKHAYEEASKY-GEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFY 201 (296)
T ss_pred hHhhcCCCEEEEeCCCC-CCcCeEEcCCHHHHHHHHHHHHhc-CCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcC
Confidence 35678999999998877 899999999999999999876533 35999999996 9999999864321 12222222111
Q ss_pred Ee----cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 91 HK----ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 91 ~~----~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.. .+. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-
T Consensus 202 ~~~~k~~~~-~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~ 267 (296)
T PRK14569 202 DYESKYSGK-SIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGM 267 (296)
T ss_pred ChhhccCCC-cEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCC
Confidence 11 122 233468889999999999999999999999999999999998889999999999984
No 63
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=1.1e-19 Score=178.29 Aligned_cols=137 Identities=21% Similarity=0.293 Sum_probs=111.3
Q ss_pred HHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEe
Q 013661 13 GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK 92 (438)
Q Consensus 13 ~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~ 92 (438)
.+.++||+||||..++ +|+|+.+++|.+||.++++.+....+.+||||||+| +|+++.++++.+ +...++..+....
T Consensus 121 ~~~l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~G-~E~sv~vl~~~~-~~~vl~~~e~~~~ 197 (299)
T PRK14571 121 TSPLGYPCVVKPRREG-SSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIPG-REMTVSILETEK-GFEVLPILELRPK 197 (299)
T ss_pred hhhcCCCEEEecCCCC-CcCCEEEECCHHHHHHHHHHHHhhCCcEEEEccccc-eEEEEEEEcCCC-CeeeeceEEEecC
Confidence 4578999999998877 899999999999999988775443456999999996 999999998743 4455665443221
Q ss_pred c-----------CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 93 E-----------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 93 ~-----------g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
. |. .....|+.++++..+++++++.+++++||+.|++++||+++ +|++||+|+|++|+-+
T Consensus 198 ~~~~~~~~k~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~Pg~~ 268 (299)
T PRK14571 198 RRFYDYVAKYTKGE-TEFILPAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTVPGLT 268 (299)
T ss_pred CCccccccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCCCCCC
Confidence 1 11 22345888999999999999999999999999999999997 5789999999999854
No 64
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.83 E-value=2.1e-19 Score=176.72 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~ 82 (438)
+.+.+++..+++++|||+|+||..++ +|+|+.++++.+|+.++++.+......++||+||+| +|+++.++.+....+.
T Consensus 119 ~~~~~~~~~~~~~~~~P~ivKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G-~E~~v~vi~~~~~~~~ 196 (304)
T PRK01372 119 LTREEDLLAAIDKLGLPLVVKPAREG-SSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIKG-RELTVAVLGGKALPVI 196 (304)
T ss_pred EeCcchHHHHHhhcCCCEEEeeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccCC-EEEEEEEECCCccceE
Confidence 45667788888999999999998876 899999999999999988776544456999999996 9999998864221111
Q ss_pred EEee-ee--eE---EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 83 CYPV-VE--TI---HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 83 ~~~~-~e--~~---~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.... .. .. ...|. .....|..++++..+++.+++.++++++|++|++++||+++++|++||+|+|+||+..
T Consensus 197 ~~~~~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~ 273 (304)
T PRK01372 197 EIVPAGEFYDYEAKYLAGG-TQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMT 273 (304)
T ss_pred EEEecCCEEeeeccccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCC
Confidence 1100 00 00 11122 2335576789999999999999999999999999999999988899999999999853
No 65
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.83 E-value=1.6e-19 Score=199.27 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=117.6
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeee
Q 013661 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e 88 (438)
+.++.+++|||+||||..+| +|.|+.+|+|++||.++++.+...++.+|||||+.+++|++|.++.+.++.....+..+
T Consensus 602 ~~~~~~~lg~P~iVKP~~~G-sS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~~~~e 680 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLG-SSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEVSCLGDGSSAYVIAGPHE 680 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEEEEEeCCCCceEeccceE
Confidence 45667889999999999987 78999999999999999998765556799999998779999999987665332222222
Q ss_pred eE-----------E-ecCeE-EEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 89 TI-----------H-KENIC-HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 89 ~~-----------~-~~g~~-~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.. + ..|.. ....+|+.+++++.+++++++.++.++||++|+++|||+++++|++||+|+|||||-+
T Consensus 681 ~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~PG~t 759 (809)
T PRK14573 681 RRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPIPGMT 759 (809)
T ss_pred EccCCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 11 1 12221 2234688899999999999999999999999999999999988999999999999953
No 66
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.82 E-value=3.6e-19 Score=175.86 Aligned_cols=141 Identities=26% Similarity=0.377 Sum_probs=110.7
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeee-
Q 013661 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET- 89 (438)
Q Consensus 11 ~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~- 89 (438)
++.+.++||+||||..++ +|+|+.+++|.+|+.++++.+......++||+||+| +|+++.++.+.++........+.
T Consensus 140 ~~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~ 217 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREG-SSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIE 217 (315)
T ss_pred HHHHhcCCCEEEEeCCCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCC
Confidence 445689999999998876 899999999999999998876554456999999996 99999999753321111111110
Q ss_pred -E------EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 90 -I------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 90 -~------~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+ +..+. .....|+.++++..+++++++.+++++||+.|++++||+++++|++||+|||||||.+
T Consensus 218 ~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~ 288 (315)
T TIGR01205 218 GFYDYEAKYLDGS-TEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMT 288 (315)
T ss_pred CeeCcccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCC
Confidence 1 11122 3334677899999999999999999999999999999999988889999999999853
No 67
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.81 E-value=6.6e-19 Score=172.28 Aligned_cols=165 Identities=22% Similarity=0.295 Sum_probs=130.4
Q ss_pred ccCCHHHHHHHHHhhCCc---EEEEecCCCCCCcCeEEeC-CHHHHHHHHH-------------Hhc--CCCCcEEEeec
Q 013661 2 EVNDLESARRAGKQFGYP---LMVKSKRLAYDGRGNAVAK-SEEELSSAIT-------------ALG--GFDRGLYVEKW 62 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP---vvvKP~~~g~gg~Gv~~v~-~~~el~~~~~-------------~~~--~~~~~~lvEe~ 62 (438)
.++|.+|+.++++++++| +.|||..|. ||+|.++++ +.+++....+ .+. +....+||++|
T Consensus 127 ~v~t~~el~~a~~~l~~~~~~~CvKP~~g~-gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMey 205 (329)
T PF15632_consen 127 RVRTADELKAAYEELRFPGQPLCVKPAVGI-GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEY 205 (329)
T ss_pred EeCCHHHHHHHHHhcCCCCceEEEecccCC-CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecC
Confidence 478999999999999887 999998765 899999999 5566555443 111 23366999999
Q ss_pred cCCCeEEEEEEEEcCCCeEE-EEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCc
Q 013661 63 APFVKELAVIVVRGRDKSIL-CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQ 141 (438)
Q Consensus 63 I~g~~e~sv~~~~d~~G~~~-~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~ 141 (438)
++| .||||+++++. |+++ ..++. +. |. ...+ +...++.+++.++++.+++.|++||||+.|.+|.
T Consensus 206 L~G-~EySVD~l~~~-G~viaaV~R~-K~---G~-~q~l-------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~ 271 (329)
T PF15632_consen 206 LPG-PEYSVDCLADE-GRVIAAVPRR-KL---GR-RQVL-------ENDEELIELARRLAEAFGLDGLFNIQFRYDEDGN 271 (329)
T ss_pred CCC-CeEEEEEEecC-CEEEEEEEEE-ec---Cc-eeEE-------EECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCC
Confidence 997 99999999974 8876 44442 22 32 1111 1224689999999999999999999999988999
Q ss_pred EEEEEEcCCCCCCCCceeeeccCcHHHHHHHHHhCCCCCCC
Q 013661 142 ILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182 (438)
Q Consensus 142 ~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~ 182 (438)
++++|||||+++ |...+..+|+|+....+..++|.+.+..
T Consensus 272 p~LLEINpR~sG-Gi~~s~~aGvNlp~la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 272 PKLLEINPRPSG-GIGYSCAAGVNLPYLAVKLALGEPIPPP 311 (329)
T ss_pred EEEEEeCCCCcc-chhhHhhcCCChHHHHHHHHcCCCCCCc
Confidence 999999999997 4445557899999999999999998765
No 68
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.79 E-value=9.5e-18 Score=151.74 Aligned_cols=149 Identities=18% Similarity=0.254 Sum_probs=116.9
Q ss_pred ccCCHHHHHHHHHhhCCcE-EEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPL-MVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPv-vvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~ 74 (438)
.++|.+++.+++++.++|+ ||||.... +|+||.+++|.+|..++++.+.. ....++||||+.| .|+|+.++
T Consensus 22 ~f~~~~~A~~~l~~~~~p~~ViKadGla-~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~ 99 (194)
T PF01071_consen 22 VFTDYEEALEYLEEQGYPYVVIKADGLA-AGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFAL 99 (194)
T ss_dssp EESSHHHHHHHHHHHSSSEEEEEESSSC-TTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCceEEccCCCC-CCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEE
Confidence 4679999999999999999 99996654 89999999999999999987642 2367999999997 99999999
Q ss_pred EcCCCeEEEEeeeeeEEe--cCe------EEEEEeCCC-CCHHHHHHHHH-HHHHHHHhc-----CcceEEEEEEEEeCC
Q 013661 75 RGRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL-----EGAGIFAVELFWTNN 139 (438)
Q Consensus 75 ~d~~G~~~~~~~~e~~~~--~g~------~~~~~~p~~-l~~~~~~~i~~-~a~~i~~~l-----g~~G~~~ve~~~~~~ 139 (438)
.|++ ++..+|..+...+ .|+ .+++++|.+ +++++.+++.+ +...++++| .|+|++.+.++++++
T Consensus 100 ~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~ 178 (194)
T PF01071_consen 100 TDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTED 178 (194)
T ss_dssp EESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETT
T ss_pred EcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCC
Confidence 9866 6677777644433 222 256778887 68888888876 777777777 688999999999977
Q ss_pred CcEEEEEEcCCCCCC
Q 013661 140 GQILLNEVAPRPHNS 154 (438)
Q Consensus 140 g~~~viEiNpR~~~s 154 (438)
| ++|||.|.|+|.+
T Consensus 179 G-p~vlEfN~RfGDP 192 (194)
T PF01071_consen 179 G-PKVLEFNVRFGDP 192 (194)
T ss_dssp E-EEEEEEESSGSTT
T ss_pred C-cEEEEEeCCCCCC
Confidence 7 9999999999864
No 69
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.73 E-value=8e-17 Score=155.81 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=112.3
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC---CCcEEEeeccCCC--eEEEEEEEEcC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF---DRGLYVEKWAPFV--KELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~---~~~~lvEe~I~g~--~e~sv~~~~d~ 77 (438)
+.+.+++.++.++++||+|+||..++ +|+|++++++.+++.+++..+... .+.+++|+||++. .++++.++
T Consensus 109 ~~~~~~~~~~~~~~~~p~vvKP~~g~-~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~--- 184 (277)
T TIGR00768 109 AGSPEEALKLIEEIGFPVVLKPVFGS-WGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVV--- 184 (277)
T ss_pred eCCHHHHHHHHHhcCCCEEEEECcCC-CCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEE---
Confidence 56788999999999999999998765 899999999999999877654321 1359999999963 45666554
Q ss_pred CCeEEEEeee---eeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 78 DKSILCYPVV---ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 78 ~G~~~~~~~~---e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+|++...-.. .....+........|..+++ ++.+++.+++++||+ |.+++||+++++|.+||+|+|+||+.
T Consensus 185 ~~~~~~~~~r~~~~~~~~n~~~g~~~~~~~l~~----~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~- 258 (277)
T TIGR00768 185 GDEVIAAIYRITSGHWRTNLARGGKAEPCPLTE----EIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEF- 258 (277)
T ss_pred CCEEEEEEEEcCCCchhhhhhcCCeeeecCCCH----HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcch-
Confidence 3454321110 00000000111223445554 578899999999998 89999999998888999999999973
Q ss_pred CCceeeeccCcHHHHHHH
Q 013661 155 GHHTIESCYTSQFEQHMR 172 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~ 172 (438)
......+|+|+.+..++
T Consensus 259 -~~~~~~~g~~l~~~~~~ 275 (277)
T TIGR00768 259 -KNSVKTTGVNIAGKLLD 275 (277)
T ss_pred -hhhHHHHCCCHHHHHHh
Confidence 23345677887776654
No 70
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.72 E-value=1.9e-16 Score=155.02 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=117.0
Q ss_pred HhhCCcEEEEecCCCCC--CcCeEEeCCHHHHHHHHHHhcCC-------CCcEEEeeccCCCeEEEEEEEEc-CCCeEEE
Q 013661 14 KQFGYPLMVKSKRLAYD--GRGNAVAKSEEELSSAITALGGF-------DRGLYVEKWAPFVKELAVIVVRG-RDKSILC 83 (438)
Q Consensus 14 ~~igyPvvvKP~~~g~g--g~Gv~~v~~~~el~~~~~~~~~~-------~~~~lvEe~I~g~~e~sv~~~~d-~~G~~~~ 83 (438)
+++.|||+|||..++ | |+|+++++|.+|+......+... -..++|||||.| .||+++++.+ -+|++..
T Consensus 149 ~eId~PVIVKp~~as-G~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~ 226 (366)
T PRK13277 149 EEIDRPVIVKLPEAK-RRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLEL 226 (366)
T ss_pred cccCccEEEEECCCC-CccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEE
Confidence 467899999997655 9 99999999999999887765421 134679999996 9999999988 3776655
Q ss_pred EeeeeeEEec--C--------e--------EEEE-EeCCCCCHHHHHHHHHHHHHHHHhcC------cceEEEEEEEEeC
Q 013661 84 YPVVETIHKE--N--------I--------CHIV-KAPAAVPWKISELATDVAHKAVSSLE------GAGIFAVELFWTN 138 (438)
Q Consensus 84 ~~~~e~~~~~--g--------~--------~~~~-~~p~~l~~~~~~~i~~~a~~i~~~lg------~~G~~~ve~~~~~ 138 (438)
..+...++.+ | + .... ..|..+.+.+.+++.+++.+++++++ +.|++++|+++++
T Consensus 227 l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~ 306 (366)
T PRK13277 227 LGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP 306 (366)
T ss_pred EEEeeccccccccccccChhhhhhcccCCceEEEcCccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC
Confidence 5444211110 0 0 0111 25667888899999999999999976 6799999999998
Q ss_pred CCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHH
Q 013661 139 NGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMR 172 (438)
Q Consensus 139 ~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~ 172 (438)
|+++|++|||||.++ |......+|.+...+.++
T Consensus 307 d~~~~V~EInpR~gG-Gtnl~~~aGs~y~~l~~~ 339 (366)
T PRK13277 307 DLDFVVYDVAPRIGG-GTNVYMGVGSPYSKLYFG 339 (366)
T ss_pred CCcEEEEEEcCCcCC-CccceeecCCCcHHHHhc
Confidence 899999999999997 555556667775544444
No 71
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.71 E-value=2.1e-16 Score=153.40 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=115.7
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh---cC-CCCcEEEeeccCC-CeEEEEEEEEcC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL---GG-FDRGLYVEKWAPF-VKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~---~~-~~~~~lvEe~I~g-~~e~sv~~~~d~ 77 (438)
+.+.+++.++.+.+|||+|+||..++ +|+|+.++++.+++.++++.. .. ....+++|+||++ ++++++.++.
T Consensus 108 ~~~~~~~~~~~~~~~~P~vvKP~~g~-~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig-- 184 (280)
T TIGR02144 108 AFDREAALKLAEALGYPVVLKPVIGS-WGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIG-- 184 (280)
T ss_pred eCCHHHHHHHHHHcCCCEEEEECcCC-CcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEEC--
Confidence 45788888888899999999998875 899999999999998876432 11 2245999999985 5788887763
Q ss_pred CCeEE--EEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 78 DKSIL--CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 78 ~G~~~--~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
|+.. .+........+........|..++++ +.+++.++++++|+ |++++||+++++|++||+|+|+||+.++
T Consensus 185 -~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~----~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 185 -DEAIAAIYRYSNHWRTNTARGGKAEPCPLDEE----VEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred -CEEEEEEEEcCCchhhhhhcCCceeccCCCHH----HHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 3322 11111111111111122346666664 67889999999996 7999999998887899999999998533
Q ss_pred CceeeeccCcHHHHHHHHHh
Q 013661 156 HHTIESCYTSQFEQHMRAVV 175 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (438)
....+|+|+.+..++.+.
T Consensus 259 --~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 259 --SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred --hhHhhCCCHHHHHHHHHH
Confidence 344678888888777653
No 72
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.71 E-value=1.2e-16 Score=142.43 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=74.3
Q ss_pred hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEec--
Q 013661 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKE-- 93 (438)
Q Consensus 16 igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~~-- 93 (438)
..+|+|+||..+. ||.|++++++.+++....... .++||||+| .++|+.++.+.+ +.............
T Consensus 30 ~~~~~viKp~~G~-Gg~~i~~~~~~~~~~~~~~~~------~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l~~~rq~i~~~~ 100 (161)
T PF02655_consen 30 IDGPWVIKPRDGA-GGEGIRIVDSEDELEEFLNKL------RIVQEFIEG-EPYSVSFLASGG-GARLLGVNRQLIGNDD 100 (161)
T ss_dssp -SSSEEEEESS--------B--SS--TTE-------------EEEE---S-EEEEEEEEE-SS-SEEEEEEEEEEEET--
T ss_pred cCCcEEEEeCCCC-CCCCeEEECCchhhccccccc------eEEeeeeCC-EEeEEEEEEeCC-ceEEEEechHhhcccc
Confidence 4789999997765 999999999999887655431 399999997 999999998765 44444443222221
Q ss_pred --CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhc-CcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 94 --NICHIVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 94 --g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~l-g~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
....+...|...+ ...++.+++.+++++| |+.|.+++||++++ +.+|++|||||+++
T Consensus 101 ~~~~~~G~~~~~~~~--~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~-~~~~viEINPR~t~ 160 (161)
T PF02655_consen 101 GRFRYCGGIVPADTP--LKEEIIELARRIAEALPGLRGYVGIDFILDD-GGPYVIEINPRFTG 160 (161)
T ss_dssp --TEEEEEEES------HHHHHHHHHHHHHTTSTT--EEEEEEEEESS--SEEEEEEESS--G
T ss_pred ceeeecccccccCCc--hHHHHHHHHHHHHHHcCCCeeeEeEEEEEeC-CcEEEEEEcCCCCC
Confidence 2244555666543 3788999999999999 99999999999985 67999999999974
No 73
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=4.4e-16 Score=152.54 Aligned_cols=144 Identities=24% Similarity=0.298 Sum_probs=117.2
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~ 87 (438)
.+.+..+.++||++|||...+ +|.|+..+++.+|+..+++.+..+++++++|+|+. ++|+++.++.+.. ....++..
T Consensus 133 ~~e~~~~~l~~p~~Vkp~~~g-SSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~ 209 (317)
T COG1181 133 IVEEVEEGLGFPLFVKPAREG-SSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT-GREIEVGVLGNDY-EEQALPLG 209 (317)
T ss_pred HHHHhhcccCCCEEEEcCCcc-ceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC-cceEEEEecCCcc-cceecCce
Confidence 345677789999999998877 79999999999999998888877778899999999 4999999987644 33333333
Q ss_pred eeEE------------ecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEcCCCCCC
Q 013661 88 ETIH------------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHNS 154 (438)
Q Consensus 88 e~~~------------~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~s 154 (438)
+... .++.......|+.+++++.++++++|.++.++||+.|++++||++++ +|++|++|+|+.||-+
T Consensus 210 eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t 289 (317)
T COG1181 210 EIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMT 289 (317)
T ss_pred EEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCc
Confidence 2221 11111334678889999999999999999999999999999999997 5889999999999843
No 74
>PRK06849 hypothetical protein; Provisional
Probab=99.69 E-value=3.7e-16 Score=158.90 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
+++.+++.++..+. +||+|+||.+++ +|+|+.++.+.+++.... ......+++||||+| .|+++.++.. +|++
T Consensus 137 v~~~~~l~~~~~~~~~~P~vlKP~~~~-~~~~v~~~~~~~~l~~~~---~~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v 210 (389)
T PRK06849 137 ITDPEAIRNFMFKTPHTPYVLKPIYSR-FVRRVDLLPKEAALKELP---ISKDNPWVMQEFIQG-KEYCSYSIVR-SGEL 210 (389)
T ss_pred eCCHHHHHHHhhcCCCCcEEEEeCccc-CCCeEEEecCHHHhcccc---cCCCCCeEEEEEecC-CeEEEEEEEE-CCEE
Confidence 57888998888776 999999998765 899999999865544321 111234999999997 7888887764 6887
Q ss_pred EEEeeeeeEE-ecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013661 82 LCYPVVETIH-KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 82 ~~~~~~e~~~-~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~ 158 (438)
..+....... .++.....+.|. . .+++.+.+.+++++||++|.+++||+++++|++|+||||||++++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~ 283 (389)
T PRK06849 211 RAHSCYKPEYCAGSGAQIAFQPI--N---HPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLF 283 (389)
T ss_pred EEEEEeeccccCCCCceeEeEEC--C---cHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEc
Confidence 6554322111 122222222232 1 2468999999999999999999999998789999999999999755543
No 75
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.68 E-value=7.3e-16 Score=145.89 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=136.0
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEe--cC
Q 013661 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK--EN 94 (438)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~--~g 94 (438)
-+|+|+||++|+ ||. +.++.-.|+.. +..+++|+||+| +.+|+.++.++. +.........+.. .+
T Consensus 149 ekt~IlKPv~Ga-GG~-~el~~~~Ee~~---------~~~~i~Qefi~G-~p~Svs~is~g~-~a~~la~N~QiI~~~~~ 215 (389)
T COG2232 149 EKTLILKPVSGA-GGL-VELVKFDEEDP---------PPGFIFQEFIEG-RPVSVSFISNGS-DALTLAVNDQIIDGLRG 215 (389)
T ss_pred ceeeEEeeccCC-Cce-eeecccccccC---------CcceehhhhcCC-ceeEEEEEecCc-ceEEEEEeeeeeccccc
Confidence 367999998865 553 33333222211 245999999997 999999998654 2333332222211 11
Q ss_pred e-----EEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccCcHHHH
Q 013661 95 I-----CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQ 169 (438)
Q Consensus 95 ~-----~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~ 169 (438)
. +.+..+|.+- +..+++++++..++..||+.|..+|||++++.| +||+|||||++++--....++++|+|++
T Consensus 216 ~~~~f~Y~GNlTP~~~--~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~~l 292 (389)
T COG2232 216 EYSQFVYKGNLTPFPY--EEVEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLFRL 292 (389)
T ss_pred ccccceeccCcCCCcc--hhhHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHHHH
Confidence 1 1223345432 233789999999999999999999999998766 8999999999976666666889999999
Q ss_pred HHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCc-EEEEeccccccCCceeEEEEEEcCCHHH
Q 013661 170 HMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHWYDKPEMRQQRKMGHITIVGSSMGL 248 (438)
Q Consensus 170 ~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~G~Vi~~G~~~~e 248 (438)
|+++.-|. +++.....+ -+..+++..+.. . .++. ++.... |+..-+ -.+..+..+..|++.+++.++
T Consensus 293 Hi~af~G~-LpEr~kpr~-~a~krILyap~~--v------~v~~-l~~~~~~DiP~~G-tviekgePl~sviA~~nt~~~ 360 (389)
T COG2232 293 HIQAFDGE-LPERPKPRG-YACKRILYAPRT--V------RVPI-LKLSWTHDIPRPG-TVIEKGEPLCSVIASSNTRSG 360 (389)
T ss_pred HHHHhcCc-CcCCCCcce-eEEeEEEeccce--e------eccc-ccccccccCCCCC-cccCCCCceeeeeeccCCHHH
Confidence 99986654 554332222 333454433211 1 1111 111111 211111 123337789999999999999
Q ss_pred HHHHHHHHhhc
Q 013661 249 VESRLNSLLKE 259 (438)
Q Consensus 249 A~~ka~~a~~~ 259 (438)
|...+.+.+..
T Consensus 361 a~~~~er~~er 371 (389)
T COG2232 361 AESMAERLAER 371 (389)
T ss_pred HHHHHHHHHHH
Confidence 99977777664
No 76
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.68 E-value=7.7e-16 Score=151.15 Aligned_cols=158 Identities=19% Similarity=0.238 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC--CCeEEEEEEEEcCCCe
Q 013661 4 NDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP--FVKELAVIVVRGRDKS 80 (438)
Q Consensus 4 ~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~--g~~e~sv~~~~d~~G~ 80 (438)
.+.+++.++++++ +||+|+||..++ +|+|++++++.+++..+++.+...+..++|||||+ .++|+.+.++. |+
T Consensus 121 ~~~~~~~~~~~~~~~~P~VvKP~~g~-~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig---~~ 196 (300)
T PRK10446 121 HSPDDTSDLIDMVGGAPLVVKLVEGT-QGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVG---DE 196 (300)
T ss_pred CCHHHHHHHHHHhCCCCEEEEECCCC-CcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEEC---CE
Confidence 5677888888887 799999998876 99999999999999988877644434599999995 24899998873 34
Q ss_pred EEEEeeeeeEEecCeE------EEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 81 ILCYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 81 ~~~~~~~e~~~~~g~~------~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
++. ..+.....++. .....+..++++ +++++.+++++||+. +.+|||+++++| +||+|||++||.+
T Consensus 197 ~~~--~~~r~~~~~~~~~n~~~g~~~~~~~l~~~----~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~~ 268 (300)
T PRK10446 197 VVA--AIERRAKEGDFRSNLHRGGAASVASITPQ----EREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGLE 268 (300)
T ss_pred EEE--EEEEecCCCchhheeccCCeeccCCCCHH----HHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCChh
Confidence 322 12111111110 112234455554 788999999999986 999999998777 8999999999743
Q ss_pred CCceeeeccCcHHHHHHHHHh
Q 013661 155 GHHTIESCYTSQFEQHMRAVV 175 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~ 175 (438)
....++|+|+.+..++.+.
T Consensus 269 --~~~~~~g~~~~~~~~~~i~ 287 (300)
T PRK10446 269 --GIEKTTGIDIAGKMIRWIE 287 (300)
T ss_pred --hhHHHHCcCHHHHHHHHHH
Confidence 3345667888777776654
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.67 E-value=2.2e-15 Score=149.70 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=107.2
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC-----CCCcEEEeeccCCCeEEEEEEEEcC-CCeEEEEeeee
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-----FDRGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVE 88 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~-----~~~~~lvEe~I~g~~e~sv~~~~d~-~G~~~~~~~~e 88 (438)
+++||+||||. +++||+|+++++|++|+.++++.+.. ....++|||||.| .||+++++... +|++..+++.+
T Consensus 147 ~i~~PvIVKp~-~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~ 224 (358)
T PRK13278 147 DIDRPVIVKLP-GAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDR 224 (358)
T ss_pred HcCCCEEEEeC-CCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeece
Confidence 45799999995 45699999999999999999987531 2356999999997 89999998753 57777776654
Q ss_pred eEEecCe----------------E---EEEEeCCCCCHHHHHHHHHHHHHHHHh----c--CcceEEEEEEEEeCCCcEE
Q 013661 89 TIHKENI----------------C---HIVKAPAAVPWKISELATDVAHKAVSS----L--EGAGIFAVELFWTNNGQIL 143 (438)
Q Consensus 89 ~~~~~g~----------------~---~~~~~p~~l~~~~~~~i~~~a~~i~~~----l--g~~G~~~ve~~~~~~g~~~ 143 (438)
.+..+-+ . .....|+.+.+.+..++.+.+.+++++ + +..|++++|+++++++++|
T Consensus 225 r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~ 304 (358)
T PRK13278 225 RYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIV 304 (358)
T ss_pred eeeecccceeeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEE
Confidence 4433200 0 011246778888999999999999888 4 6679999999999899999
Q ss_pred EEEEcCCCC
Q 013661 144 LNEVAPRPH 152 (438)
Q Consensus 144 viEiNpR~~ 152 (438)
|+|+|+|+.
T Consensus 305 V~Eis~R~~ 313 (358)
T PRK13278 305 VFEISARIV 313 (358)
T ss_pred EEEEeCccc
Confidence 999999994
No 78
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.63 E-value=7.2e-14 Score=140.68 Aligned_cols=255 Identities=15% Similarity=0.143 Sum_probs=171.4
Q ss_pred ccCCHHHHHHHHHhhCC-cEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCCeEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGY-PLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igy-PvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~I~g~~e~sv~~~ 74 (438)
++++++++..+..+.+| ++|||..-.. .|+||.+..+.+|.-++.+++. +...+++|||+++| .|+|+.++
T Consensus 128 ~ft~~e~a~sfi~~~~~~~~ViKAdGLA-AGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laf 205 (788)
T KOG0237|consen 128 TFTDPEEAKSFIQSATDKALVIKADGLA-AGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAF 205 (788)
T ss_pred eeCCHHHHHHHHHhCCCcceEEeecccc-cCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEE
Confidence 57889999999999995 6999996555 8999999999999999888752 23467999999997 99999999
Q ss_pred EcCCCeEEEEeeeeeEEe--cCe------EEEEEeCCC-CCHHHHHHHHH-HHHHHHHhc-----CcceEEEEEEEEeCC
Q 013661 75 RGRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL-----EGAGIFAVELFWTNN 139 (438)
Q Consensus 75 ~d~~G~~~~~~~~e~~~~--~g~------~~~~~~p~~-l~~~~~~~i~~-~a~~i~~~l-----g~~G~~~ve~~~~~~ 139 (438)
.|+. .+..+|..+...+ +|+ .++.+.|++ .++++.+.+.+ +.++.++.| .|.|++..-++++++
T Consensus 206 tDG~-s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~ 284 (788)
T KOG0237|consen 206 TDGY-SVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKD 284 (788)
T ss_pred ecCc-ccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecC
Confidence 8754 4556666533333 122 255677888 67777666544 445555554 567999999999988
Q ss_pred CcEEEEEEcCCCCCCCCceeeecc-CcHHHHHHHHHhCCCCCCCCCCC-CceEEEEeecCCccCCCcchhh--hchhhhh
Q 013661 140 GQILLNEVAPRPHNSGHHTIESCY-TSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAH--QLIGKAL 215 (438)
Q Consensus 140 g~~~viEiNpR~~~sg~~~~~~~~-~~~~~~~~~~~~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~ 215 (438)
+ +.++|.|.|+|.+........- .|+++.++.. +...|......+ ...++..+++..+....+.+.. .+..+ .
T Consensus 285 ~-P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~-~~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~-~ 361 (788)
T KOG0237|consen 285 G-PKVLEFNVRFGDPETQVLLPLLESDLAEVILAC-CNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPE-A 361 (788)
T ss_pred C-ccEEEEecccCCchhhhhHHHHHhHHHHHHHHH-hhCCccccCccccccceEEEEEecCCCCCCCcCCcccccCcc-c
Confidence 7 8899999999987766555433 5777665544 555555544332 1234444454443332233210 01111 1
Q ss_pred ccCCcEEEEec-----cccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 216 SIPGATVHWYD-----KPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 216 ~~p~~~~~~~~-----~~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
..|+..+.-.+ ...+..+.|+-.|.+.+++.++|.++++++++.+++
T Consensus 362 ~~~~~rVFHAGTs~~ss~vvTNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~F 413 (788)
T KOG0237|consen 362 DRPGTRVFHAGTSLDSSNVVTNGGRVLSVTATGDDLESAAETAYKAVQVISF 413 (788)
T ss_pred CCCcceEEeccccccccceEecCceEEEEEecCchHHHHHHHHHHHheEEee
Confidence 12343332212 112233788888999999999999999999998765
No 79
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.61 E-value=1.3e-14 Score=132.92 Aligned_cols=159 Identities=23% Similarity=0.287 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCC--eEEEEEEEEcCCC
Q 013661 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFV--KELAVIVVRGRDK 79 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~--~e~sv~~~~d~~G 79 (438)
+.+.+++.++.+++ +||+|+||.+++ .|+||.++++.+++...++........+++|+||+.. +++.+.++ +|
T Consensus 24 ~~~~~~~~~~~~~~~~~p~ViKp~~g~-~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vi---g~ 99 (190)
T PF08443_consen 24 TNSPEEAKEFIEELGGFPVVIKPLRGS-SGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKDGGRDLRVYVI---GG 99 (190)
T ss_dssp ESSHHHHHHHHHHH--SSEEEE-SB--------EEEESHCHHHHHHH-----TTT-EEEE----SS---EEEEEE---TT
T ss_pred ECCHHHHHHHHHHhcCCCEEEeeCCCC-CCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCCCCcEEEEEEE---CC
Confidence 56899999999999 899999998765 8999999999999999877644333459999999953 69999888 34
Q ss_pred eEEE-Eeee--e-eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 80 SILC-YPVV--E-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~-~~~~--e-~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
+++. +... . .+..+-.......|..+++ ++.+++.++++++|+ .+++||++.+ ++.+||+|||+.++-
T Consensus 100 ~vv~a~~r~~~~~d~r~n~~~g~~~~~~~l~~----e~~~~a~~~~~~lgl-~~~giDi~~~-~~~~~v~EvN~~~~~-- 171 (190)
T PF08443_consen 100 KVVGAYRRSSPEGDFRTNLSRGGKVEPYDLPE----EIKELALKAARALGL-DFAGIDILDT-NDGPYVLEVNPNPGF-- 171 (190)
T ss_dssp EEEEEEE------------------EE----H----HHHHHHHHHHHHTT--SEEEEEEEEE-TTEEEEEEEETT-----
T ss_pred EEEEEEEEecCcccchhhhccCceEEEecCCH----HHHHHHHHHHHHhCC-CEEEEEEEec-CCCeEEEEecCCchH--
Confidence 5543 2211 0 1111111111233555555 478889999999997 7999996665 556999999999973
Q ss_pred CceeeeccCcHHHHHHHH
Q 013661 156 HHTIESCYTSQFEQHMRA 173 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (438)
......+|+|..+..++.
T Consensus 172 ~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 172 RGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp TTHHHHH---HHHHHHHH
T ss_pred hHHHHHHCcCHHHHHHhh
Confidence 334456777777766543
No 80
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6e-12 Score=123.74 Aligned_cols=142 Identities=19% Similarity=0.307 Sum_probs=97.7
Q ss_pred cCCHHHHHHHH-HhhCCcEEEEecCCCCCCcCeEEeCCHH-HHHHHHHHhcCCC-CcEEEeeccCCC-eEEEEEEEEcCC
Q 013661 3 VNDLESARRAG-KQFGYPLMVKSKRLAYDGRGNAVAKSEE-ELSSAITALGGFD-RGLYVEKWAPFV-KELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~-~~igyPvvvKP~~~g~gg~Gv~~v~~~~-el~~~~~~~~~~~-~~~lvEe~I~g~-~e~sv~~~~d~~ 78 (438)
+.+.++..+++ +.+|||+|+||.+|+ +|+||++++|.+ ++.+..+.+.... ..+++||||+-. ++.-..++. +
T Consensus 140 ~~~~~~~~~~~~~~~g~pvVlKp~~Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~--~ 216 (318)
T COG0189 140 TRDPDEAAEFVAEHLGFPVVLKPLDGS-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVG--G 216 (318)
T ss_pred EcCHHHHHHHHHHhcCCCEEEeeCCCC-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEe--C
Confidence 34555666655 467899999998765 999999999999 9988888775442 359999999942 344444443 4
Q ss_pred CeEEEEeeeeeEEecCeE------EEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013661 79 KSILCYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~~------~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
|.+..+-....+..+|+. .+...|..++++ ++++|.+++++||. ++++||++.+++| .||+|||..|+
T Consensus 217 ~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e----~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~ 290 (318)
T COG0189 217 GEVVAIYALARIPASGDFRSNLARGGRAEPCELTEE----EEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPT 290 (318)
T ss_pred CEEeEEeeeccccCCCCceeeccccccccccCCCHH----HHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCc
Confidence 455443100011111111 122345667765 78899999999985 8999999998655 89999999876
Q ss_pred C
Q 013661 153 N 153 (438)
Q Consensus 153 ~ 153 (438)
.
T Consensus 291 ~ 291 (318)
T COG0189 291 G 291 (318)
T ss_pred c
Confidence 3
No 81
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.38 E-value=6.7e-12 Score=136.64 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=114.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
+.+.+++.++++++|||+|+||..++ +|+||++ ++|++|+.++++.+......++||+||+| +|+++.++ +|++
T Consensus 235 v~s~~~a~~~a~~iG~PvVVKP~~G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~G-~d~Rv~Vv---gg~v 309 (727)
T PRK14016 235 VTSAEDAWEAAEEIGYPVVVKPLDGN-HGRGVTVNITTREEIEAAYAVASKESSDVIVERYIPG-KDHRLLVV---GGKL 309 (727)
T ss_pred eCCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecCC-ceEEEEEE---CCEE
Confidence 57889999999999999999998876 8999998 99999999999877544456999999996 89998776 3454
Q ss_pred EEEeeeeeEEe--c----------------------------------------------------CeEEEEEe------
Q 013661 82 LCYPVVETIHK--E----------------------------------------------------NICHIVKA------ 101 (438)
Q Consensus 82 ~~~~~~e~~~~--~----------------------------------------------------g~~~~~~~------ 101 (438)
+........+. + |....-..
T Consensus 310 vaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~ 389 (727)
T PRK14016 310 VAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLST 389 (727)
T ss_pred EEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccC
Confidence 33222111000 0 00000000
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC------CCcEEEEEEcCCCCCCCCc-eeeeccCcHHHHHH
Q 013661 102 ---PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NGQILLNEVAPRPHNSGHH-TIESCYTSQFEQHM 171 (438)
Q Consensus 102 ---p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~------~g~~~viEiNpR~~~sg~~-~~~~~~~~~~~~~~ 171 (438)
....++++.+++.+++.++++.+|+ ++++||++.++ +....|+|||..|+-..+. .......+.....+
T Consensus 390 Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Ii 468 (727)
T PRK14016 390 GGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIV 468 (727)
T ss_pred CCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHH
Confidence 1113455666789999999999987 89999998853 1236899999999864433 22234455555555
Q ss_pred HHH
Q 013661 172 RAV 174 (438)
Q Consensus 172 ~~~ 174 (438)
..+
T Consensus 469 d~L 471 (727)
T PRK14016 469 DML 471 (727)
T ss_pred HHh
Confidence 553
No 82
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.38 E-value=5.5e-12 Score=133.06 Aligned_cols=147 Identities=18% Similarity=0.303 Sum_probs=104.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
+.+.+++.++++++| |+||||..++ +|+||++ ++++++|.++++.+......++||+|++| .|+.+.++ +|++
T Consensus 318 ~~~~~~~~~~~~~~G-~vVVKP~~G~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~G-~d~Rv~Vi---gg~v 391 (547)
T TIGR03103 318 AGNGEAVEAFLAEHG-AVVVKPVRGE-QGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVPG-EDLRLVVI---DFEV 391 (547)
T ss_pred ECCHHHHHHHHHHhC-CEEEEECCCC-CCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEeccC-CeEEEEEE---CCEE
Confidence 467889999999999 6999998876 9999997 99999999999887655556999999996 89988766 2343
Q ss_pred EEEeeee--eEEec-------------------------------------------------CeEEE-------E--Ee
Q 013661 82 LCYPVVE--TIHKE-------------------------------------------------NICHI-------V--KA 101 (438)
Q Consensus 82 ~~~~~~e--~~~~~-------------------------------------------------g~~~~-------~--~~ 101 (438)
+..-... ++.-+ |.... + -.
T Consensus 392 vaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~ 471 (547)
T TIGR03103 392 VAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT 471 (547)
T ss_pred EEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCe
Confidence 2211110 00000 00000 0 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CC-cEEEEEEcCCCCCCCC
Q 013661 102 PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NG-QILLNEVAPRPHNSGH 156 (438)
Q Consensus 102 p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g-~~~viEiNpR~~~sg~ 156 (438)
...+++++..++.++|.++++++|+ .+++||++.++ ++ ...|||+|.|||-..|
T Consensus 472 ~~dvtd~~~~~~~~~A~~aa~~~gl-~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 472 IHDVTEQLHPDLREAAERAARALDI-PVVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred eEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 1124556777899999999999997 58999999864 22 3589999999995444
No 83
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.33 E-value=1.7e-11 Score=131.35 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCC---HHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKS---EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v~~---~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~ 78 (438)
+++.+++.+....+ |||+||||..++ +|+||.++.+ .+++.+++..+...+..+|||+||+| +||++.++.+
T Consensus 496 ~~~~~~a~~~~~~~~g~PVVVKP~~g~-~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~G-~EyRv~VIg~-- 571 (737)
T TIGR01435 496 FSSQALALEAFSLFENKAIVVKPKSTN-YGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLPG-TEYRFFVLND-- 571 (737)
T ss_pred ECCHHHHHHHHHHhcCCCEEEeeCCCC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEecccC-CEEEEEEECC--
Confidence 56677777777777 799999998876 8999999876 78999998877665667999999996 9999987742
Q ss_pred CeEEEEeee--eeEE---------------------------------------------------ecCeEEE-------
Q 013661 79 KSILCYPVV--ETIH---------------------------------------------------KENICHI------- 98 (438)
Q Consensus 79 G~~~~~~~~--e~~~---------------------------------------------------~~g~~~~------- 98 (438)
+++..... -++. ..|....
T Consensus 572 -kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNl 650 (737)
T TIGR01435 572 -KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNV 650 (737)
T ss_pred -eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcc
Confidence 22110000 0000 0011000
Q ss_pred EE--eCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC--------CcEEEEEEcCCCCCCCC
Q 013661 99 VK--APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN--------GQILLNEVAPRPHNSGH 156 (438)
Q Consensus 99 ~~--~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~--------g~~~viEiNpR~~~sg~ 156 (438)
+. .+..+++++.....++|.++++++|+. +++||+++.+- ....|||+|.+|+--.|
T Consensus 651 stGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 651 STGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMH 717 (737)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchhhh
Confidence 00 012356777888999999999999996 99999998531 11458999999985333
No 84
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.26 E-value=8.7e-11 Score=130.32 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=115.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~-v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
.+.+.+++.++++++|||+|+||..++ +|+||.+ +++++|+.++++.+......+|||+|++| +||++.++ +|+
T Consensus 233 ~~~s~~ea~~~~~~ig~PvVVKP~~g~-~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~G-~e~rvlVv---~~~ 307 (864)
T TIGR02068 233 VVQSAEDAWEAAQDLGYPVVIKPYDGN-HGRGVTINILTRDEIESAYEAAVEESSGVIVERFITG-RDHRLLVV---GGK 307 (864)
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEeccC-CEEEEEEE---CCE
Confidence 367889999999999999999998765 8999998 99999999999887654456999999997 99999776 334
Q ss_pred EEEEeee--eeEEe----------------------------------------------------cCeEEEE-------
Q 013661 81 ILCYPVV--ETIHK----------------------------------------------------ENICHIV------- 99 (438)
Q Consensus 81 ~~~~~~~--e~~~~----------------------------------------------------~g~~~~~------- 99 (438)
++..-.. .++.- .|....-
T Consensus 308 vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls 387 (864)
T TIGR02068 308 VVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLS 387 (864)
T ss_pred EEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecccccc
Confidence 3322100 01000 0110000
Q ss_pred E--eCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC------CCcEEEEEEcCCCCCCCCce-eeeccCcHHHHH
Q 013661 100 K--APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NGQILLNEVAPRPHNSGHHT-IESCYTSQFEQH 170 (438)
Q Consensus 100 ~--~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~------~g~~~viEiNpR~~~sg~~~-~~~~~~~~~~~~ 170 (438)
. .....++++..+..+++.++++++|+ .+++||++..+ +....|+|+|+.|+-..|.. ....+.+.....
T Consensus 388 ~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~I 466 (864)
T TIGR02068 388 TGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAI 466 (864)
T ss_pred CCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHH
Confidence 0 01123566777789999999999987 68889998742 12357899999998654432 333446666666
Q ss_pred HHHH
Q 013661 171 MRAV 174 (438)
Q Consensus 171 ~~~~ 174 (438)
+...
T Consensus 467 l~~l 470 (864)
T TIGR02068 467 VDML 470 (864)
T ss_pred HHHh
Confidence 6654
No 85
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.24 E-value=9.9e-11 Score=127.25 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=101.7
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEe---CCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVA---KSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v---~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~ 78 (438)
+.+.+++.+.++++ |||+||||..++ +|+||.++ ++.+++.+++..+......+||||||+| +||++.++.
T Consensus 509 ~~~~e~a~~~~~~~~g~PvVVKP~~g~-~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~G-~E~Rv~Vig--- 583 (752)
T PRK02471 509 FTSLEEALADYSLFADKAIVVKPKSTN-FGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIVG-TEYRFFVLD--- 583 (752)
T ss_pred EcCHHHHHHHHHHhcCCCEEEEECCCC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEecccC-CEEEEEEEC---
Confidence 56778887777764 899999998876 89999986 5688998888876655566999999996 999998773
Q ss_pred CeEEEEeee--eeEEe----------------------------------------------------cCeEEE------
Q 013661 79 KSILCYPVV--ETIHK----------------------------------------------------ENICHI------ 98 (438)
Q Consensus 79 G~~~~~~~~--e~~~~----------------------------------------------------~g~~~~------ 98 (438)
|+++..-.. -++.- .|....
T Consensus 584 gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~N 663 (752)
T PRK02471 584 GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSN 663 (752)
T ss_pred CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCc
Confidence 232110000 00000 010000
Q ss_pred -E--EeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-----C-C--cEEEEEEcCCCCCCCC
Q 013661 99 -V--KAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-----N-G--QILLNEVAPRPHNSGH 156 (438)
Q Consensus 99 -~--~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-----~-g--~~~viEiNpR~~~sg~ 156 (438)
+ -.+..+++.+.+...+++.++++++|+. +++||++..+ + . ...|||+|.+|+-..|
T Consensus 664 lstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 664 ISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred cCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 0 0012356677888999999999999975 8889999854 0 1 4678999999985444
No 86
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.21 E-value=1.8e-10 Score=113.17 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=90.0
Q ss_pred HHHHhhCCcEEEEecCC--CCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCCCeEEEEeee
Q 013661 11 RAGKQFGYPLMVKSKRL--AYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 11 ~~~~~igyPvvvKP~~~--g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~e~sv~~~~d~~G~~~~~~~~ 87 (438)
...+.+|||+|+||..+ +++|++|.++.++++|.. ...+ +++||||+ +++.|.|.++.|. +...-+.
T Consensus 146 ~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~-----l~~p--~~lQEfVnh~g~d~RVfVvGd~---v~~~~R~ 215 (328)
T PLN02941 146 VALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK-----LEPP--LVLQEFVNHGGVLFKVYVVGDY---VKCVRRF 215 (328)
T ss_pred HHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh-----cCCc--EEEEEecCCCCEEEEEEEECCE---EEEEEec
Confidence 33468999999999874 237999999999999876 2345 99999997 5699999988543 2211111
Q ss_pred -e-eEE------ecCeEE-------------EE---EeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC--Cc
Q 013661 88 -E-TIH------KENICH-------------IV---KAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN--GQ 141 (438)
Q Consensus 88 -e-~~~------~~g~~~-------------~~---~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~--g~ 141 (438)
. ++. ..|... .. .-|........+++.+++.++.++||. +++++|++.+.+ +.
T Consensus 216 S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~ 294 (328)
T PLN02941 216 SLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDR 294 (328)
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCc
Confidence 1 111 001000 00 000011111234589999999999997 899999999863 46
Q ss_pred EEEEEEcCCCCCCCC
Q 013661 142 ILLNEVAPRPHNSGH 156 (438)
Q Consensus 142 ~~viEiNpR~~~sg~ 156 (438)
++|+|||.-|+--+.
T Consensus 295 ~~VidVN~fP~~k~~ 309 (328)
T PLN02941 295 YYVIDINYFPGYAKM 309 (328)
T ss_pred eEEEEecCCCccccC
Confidence 899999999984343
No 87
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.20 E-value=1.5e-11 Score=115.24 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=98.5
Q ss_pred HHHHHHhhCCcEEEEecCCCC----CCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCe--EEEEEEEEcCCCe
Q 013661 9 ARRAGKQFGYPLMVKSKRLAY----DGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVK--ELAVIVVRGRDKS 80 (438)
Q Consensus 9 ~~~~~~~igyPvvvKP~~~g~----gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~--e~sv~~~~d~~G~ 80 (438)
+...+.++-||+|+||..+++ +-.-.+.+.|.+|+..++..+. ..+.+++||+||+|+- .++.-++-| +|+
T Consensus 139 ~d~~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~-~g~ 217 (415)
T COG3919 139 IDTLVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWD-KGH 217 (415)
T ss_pred hhhhhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHh-CCC
Confidence 334556889999999965431 1123567788999988876653 3567899999999754 355545544 333
Q ss_pred EEEEeeeeeE--Ee-c-CeE-EEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC-CCcEEEEEEcCCCCCC
Q 013661 81 ILCYPVVETI--HK-E-NIC-HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHNS 154 (438)
Q Consensus 81 ~~~~~~~e~~--~~-~-g~~-~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~s 154 (438)
.+........ +. . |.. .... +.+ .+++.+.++++++.++++|+.++||.+|+ ||...++|||||+++.
T Consensus 218 pvaeftarr~rqyPvdfgytst~ve----vvD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~w 291 (415)
T COG3919 218 PVAEFTARRLRQYPVDFGYTSTVVE----VVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRW 291 (415)
T ss_pred chhhhhcchhhcCCcccccccEEEE----ecC--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcce
Confidence 2211100000 00 0 111 1111 222 35688899999999999999999999997 6889999999999852
Q ss_pred CCceeeeccCcHHHHHHHHH
Q 013661 155 GHHTIESCYTSQFEQHMRAV 174 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~ 174 (438)
.. ...+.|+|+-..+++..
T Consensus 292 fg-l~taaG~nLg~~Lwa~~ 310 (415)
T COG3919 292 FG-LVTAAGYNLGRYLWADR 310 (415)
T ss_pred ee-EEecccccccceEEeee
Confidence 21 12233555554444433
No 88
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.17 E-value=9.5e-11 Score=107.76 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=91.4
Q ss_pred EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeee-EEecCe-EE
Q 013661 20 LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET-IHKENI-CH 97 (438)
Q Consensus 20 vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~-~~~~g~-~~ 97 (438)
.|+||.++ +||.|+....+..++ .++||||+| .+.||.... +. .+..+...+. +...+. ..
T Consensus 141 ~ViKp~dg-Cgge~i~~~~~~pd~-------------~i~qEfIeG-~~lSVSL~~-GE-kv~pLsvNrQfi~~~~~~~~ 203 (307)
T COG1821 141 YVIKPADG-CGGEGILFGRDFPDI-------------EIAQEFIEG-EHLSVSLSV-GE-KVLPLSVNRQFIIFAGSELV 203 (307)
T ss_pred EEeccccc-CCcceeeccCCCcch-------------hhHHHhcCC-cceEEEEec-CC-ccccceechhhhhhccceee
Confidence 79999765 699999888876653 689999997 999999543 22 2334443321 111221 22
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcC-cceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHH
Q 013661 98 IVKAPAAVPWKISELATDVAHKAVSSLE-GAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMR 172 (438)
Q Consensus 98 ~~~~p~~l~~~~~~~i~~~a~~i~~~lg-~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~ 172 (438)
+.-.+.+.+.++.+++.+.|.+.++.++ +.|.++||+.+. +.+|++|||||+.-+-.-....+.-++.+.+++
T Consensus 204 y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~ 277 (307)
T COG1821 204 YNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS--DEPYVIEINPRPTTPTVGLSRVTPESVAELLLE 277 (307)
T ss_pred eccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec--CCcEEEEecCCCCcceeeeeccccHHHHHHHhc
Confidence 2234667788999999999999999995 889999999996 469999999999732222233344444443333
No 89
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.14 E-value=2.9e-09 Score=102.33 Aligned_cols=148 Identities=23% Similarity=0.311 Sum_probs=101.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeC----------------------CHHHHHHHHHHhcCCCCcEEEe
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAK----------------------SEEELSSAITALGGFDRGLYVE 60 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~----------------------~~~el~~~~~~~~~~~~~~lvE 60 (438)
+.+.+++.+++++.+. |+|||..|+ .|+||.++. +.+++...+..... ...+|||
T Consensus 42 ~~~~~~l~~~L~~y~~-vylKP~~Gs-~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~yIiQ 118 (262)
T PF14398_consen 42 LTSFEDLREMLNKYKS-VYLKPDNGS-KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLG-KRRYIIQ 118 (262)
T ss_pred cCCHHHHHHHHHHCCE-EEEEeCCCC-CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcC-CCcEEEe
Confidence 4577899999988764 999998765 899987654 45677766665433 2459999
Q ss_pred eccCC----Ce--EEEEEEEEcCCCeEEEEeeeeeEEecCeEE------EEEeCCC--C-----CHHHHHHHHHHHHHHH
Q 013661 61 KWAPF----VK--ELAVIVVRGRDKSILCYPVVETIHKENICH------IVKAPAA--V-----PWKISELATDVAHKAV 121 (438)
Q Consensus 61 e~I~g----~~--e~sv~~~~d~~G~~~~~~~~e~~~~~g~~~------~~~~p~~--l-----~~~~~~~i~~~a~~i~ 121 (438)
+.|+- ++ ++.+.+..+.+|++...+..-.+-..|... +...+.. + .....++|.+++.+++
T Consensus 119 q~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia 198 (262)
T PF14398_consen 119 QGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIA 198 (262)
T ss_pred CCccccccCCCeEEEEEEEEECCCCCEEEEEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99982 33 566667777788776555442222211111 1111111 2 2346667777777777
Q ss_pred Hhc----Cc-ceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 122 SSL----EG-AGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 122 ~~l----g~-~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+.| +. -|-+++|+.+|.+|.+|+||||.+|+.
T Consensus 199 ~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 199 QALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSKPGK 235 (262)
T ss_pred HHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCCCCc
Confidence 776 55 488999999999999999999999985
No 90
>PRK12458 glutathione synthetase; Provisional
Probab=99.02 E-value=5.5e-09 Score=104.14 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=95.8
Q ss_pred cCCHHHHHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHH--HHHHHHHhcCCCCcEEEeeccCCC--eEEEEEEEEcC
Q 013661 3 VNDLESARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEE--LSSAITALGGFDRGLYVEKWAPFV--KELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyP-vvvKP~~~g~gg~Gv~~v~~~~e--l~~~~~~~~~~~~~~lvEe~I~g~--~e~sv~~~~d~ 77 (438)
..+.+++.++++++++| +|+||..++ +|+|++++++.++ +...++.+.. .+.+++|+||++. .++.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~pvVvKPl~G~-gG~gV~~v~~~~~~~~~~ile~~~~-~~~~ivQeyI~~~~~gDiRv~vv--- 221 (338)
T PRK12458 147 SRNKEYIREFLEESPGDKMILKPLQGS-GGQGVFLIEKSAQSNLNQILEFYSG-DGYVIAQEYLPGAEEGDVRILLL--- 221 (338)
T ss_pred eCCHHHHHHHHHHcCCCeEEEEECCCC-CccCeEEEecCChhhHHHHHHHHhh-CCCEEEEEcccCCCCCCEEEEEE---
Confidence 35678899999999775 999998765 9999999987664 5555554432 2349999999852 46666655
Q ss_pred CCeEE----EEeeeeeEEecCeE------EEEEeCCCCCHHHHHHHHHHHHHHHHhc---CcceEEEEEEEEeCCCcEEE
Q 013661 78 DKSIL----CYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSL---EGAGIFAVELFWTNNGQILL 144 (438)
Q Consensus 78 ~G~~~----~~~~~e~~~~~g~~------~~~~~p~~l~~~~~~~i~~~a~~i~~~l---g~~G~~~ve~~~~~~g~~~v 144 (438)
+|+++ .++........++. .....+..++++ .++++.++...| |+ .+++||++ + .+|
T Consensus 222 ~g~~v~~~g~~~a~~R~~~~~d~RsN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~GL-~~~gVDli----~-~~l 291 (338)
T PRK12458 222 NGEPLERDGHYAAMRRVPAGGDVRSNVHAGGSVVKHTLTKE----ELELCEAIRPKLVRDGL-FFVGLDIV----G-DKL 291 (338)
T ss_pred CCEEEeeccceeEEEEecCCCCeeecccCCCcccCcCCCHH----HHHHHHHHHHHHhhcCC-eEEeEEEE----C-CEE
Confidence 45655 01111111111111 112345556765 556666666655 43 48889987 2 268
Q ss_pred EEEcCCCCCCCCc-eeeeccCcHHHHHHHHH
Q 013661 145 NEVAPRPHNSGHH-TIESCYTSQFEQHMRAV 174 (438)
Q Consensus 145 iEiNpR~~~sg~~-~~~~~~~~~~~~~~~~~ 174 (438)
+|||++..+ |.. ....+++|.-...++.+
T Consensus 292 ~EIN~~sp~-g~~~~~~~~g~d~a~~i~~~i 321 (338)
T PRK12458 292 VEVNVFSPG-GLTRINKLNKIDFVEDIIEAL 321 (338)
T ss_pred EEEeCCCcc-hHHHHHHHhCCCHHHHHHHHH
Confidence 899997442 322 23446677766665553
No 91
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.98 E-value=1.5e-08 Score=99.16 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 108 KISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 108 ~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+..+++.+++.++.+++|+ |++++|++++.++.++|+|+|+.|+-
T Consensus 228 p~~~el~~la~~A~~~~g~-~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 228 PHWERLLELAASCWELTGL-GYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred hhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 5567899999999999998 99999999987767999999999984
No 92
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.84 E-value=1.5e-07 Score=92.84 Aligned_cols=154 Identities=11% Similarity=0.101 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHHHhcC-CCCcEEEeeccCC--CeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~~~~~-~~~~~lvEe~I~g--~~e~sv~~~~d~~ 78 (438)
..+.+++.+++++.| |+|+||..++ +|+|++++++ ..++....+.+.. ....+++|+||+. ..++.+.++ +
T Consensus 140 ~~~~~~~~~~~~~~g-~vVvKPl~G~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv---~ 214 (312)
T TIGR01380 140 TRDKAEIRAFLAEHG-DIVLKPLDGM-GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLI---D 214 (312)
T ss_pred eCCHHHHHHHHHHcC-CEEEEECCCC-CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEE---C
Confidence 357889999999998 9999998775 9999999875 3334333232211 1134999999983 368888877 4
Q ss_pred CeEEEEeeee-----eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHH---HhcCcceEEEEEEEEeCCCcEEEEEEcCC
Q 013661 79 KSILCYPVVE-----TIHKENICHIVKAPAAVPWKISELATDVAHKAV---SSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 79 G~~~~~~~~e-----~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~---~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
|+++.+.... .+..+-...+...|..++++ .++++.+++ +.+|+ .+.+||++ | .||+|||+.
T Consensus 215 g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~l~~e----~~~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN~~ 284 (312)
T TIGR01380 215 GEPIGAAVARIPAGGEFRGNLAVGGRGEATELSER----DREICADVAPELKRRGL-LFVGIDVI----G-GYLTEVNVT 284 (312)
T ss_pred CeEEEEEEEecCCCCCccccccCCceeeccCCCHH----HHHHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEecC
Confidence 5654322211 01111001123456667775 344455554 55564 67889987 3 379999986
Q ss_pred -CCCCCCc-eeeeccCcHHHHHHHH
Q 013661 151 -PHNSGHH-TIESCYTSQFEQHMRA 173 (438)
Q Consensus 151 -~~~sg~~-~~~~~~~~~~~~~~~~ 173 (438)
|. +.. ....+++|.-...++.
T Consensus 285 ~p~--~~~~~~~~~g~~ia~~i~d~ 307 (312)
T TIGR01380 285 SPT--GIREIDRQKGVNIAGMLWDA 307 (312)
T ss_pred Ccc--hHHHHHhhhCCCHHHHHHHH
Confidence 32 332 2345667766665544
No 93
>PRK05246 glutathione synthetase; Provisional
Probab=98.79 E-value=7e-08 Score=95.48 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=94.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHHHhcC-CCCcEEEeeccCC--CeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~~~~~-~~~~~lvEe~I~g--~~e~sv~~~~d~~ 78 (438)
..+.+++.+++++.| |+|+||..|+ +|+|++++.+ ..++....+.+.. ....+++|+||+. ..++.+.++ +
T Consensus 141 ~~~~~~~~~~~~~~~-~vVlKP~~G~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv---~ 215 (316)
T PRK05246 141 TRDKAEIRAFRAEHG-DIILKPLDGM-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLV---D 215 (316)
T ss_pred eCCHHHHHHHHHHCC-CEEEEECCCC-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEE---C
Confidence 457888999999988 9999998876 9999999954 4444433333321 1234999999975 368888777 3
Q ss_pred CeEEE--Eeee--eeEEecCe-EEEEEeCCCCCHHHHHHHHHHHHHHH---HhcCcceEEEEEEEEeCCCcEEEEEEcCC
Q 013661 79 KSILC--YPVV--ETIHKENI-CHIVKAPAAVPWKISELATDVAHKAV---SSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 79 G~~~~--~~~~--e~~~~~g~-~~~~~~p~~l~~~~~~~i~~~a~~i~---~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
|+++. +... ..-.+.+. ..+...|..++++ ..+++.+++ +.+|+ .+++||++ |. ||+|||..
T Consensus 216 g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~gl-~~~GVDli----~~-~l~EvN~~ 285 (316)
T PRK05246 216 GEPVGYALARIPAGGETRGNLAAGGRGEATPLTER----DREICAAIGPELKERGL-IFVGIDVI----GD-YLTEINVT 285 (316)
T ss_pred CEEhhheeEecCCCCCcccCccCCceEeccCCCHH----HHHHHHHHHHHHHHhCC-CEEEEEEe----CC-EEEEEeCC
Confidence 55443 2111 00001111 1123456667765 455555555 45554 57889987 22 79999986
Q ss_pred -CCCCCCc-eeeeccCcHHHHHHHHH
Q 013661 151 -PHNSGHH-TIESCYTSQFEQHMRAV 174 (438)
Q Consensus 151 -~~~sg~~-~~~~~~~~~~~~~~~~~ 174 (438)
|+ +.. ....+++|.-...++.+
T Consensus 286 ~p~--~~~~~~~~tg~~ia~~i~~~~ 309 (316)
T PRK05246 286 SPT--GIREIERLTGVDIAGMLWDAI 309 (316)
T ss_pred Cch--HHHHHHHHhCCCHHHHHHHHH
Confidence 43 222 23456677766666554
No 94
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.69 E-value=9.2e-08 Score=82.99 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=89.8
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHHHhHhhhhhc-CCeEEEEecc---ccCcccccccCC
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAG---GAAHLPGMVAAR 346 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~~~~~~~~~~-g~~v~i~~ag---~~~~l~~~i~~~ 346 (438)
.++++.+++||+.+.+.++.|.++ ||++.+| .+ |.+|+ ++. |++|..+..| +..++.++|...
T Consensus 6 ~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT----~g----Ta~~L---~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g 74 (142)
T PRK05234 6 RIALIAHDHKKDDLVAWVKAHKDLLEQHELYAT----GT----TGGLI---QEATGLDVTRLLSGPLGGDQQIGALIAEG 74 (142)
T ss_pred EEEEEEeccchHHHHHHHHHHHHHhcCCEEEEe----Ch----HHHHH---HhccCCeeEEEEcCCCCCchhHHHHHHcC
Confidence 358889999999999999999999 9999998 56 88888 556 8987766655 678899999999
Q ss_pred CCCceEecc--CC-CC-CCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHH
Q 013661 347 TPLPVIGVP--VR-AS-ALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQ 410 (438)
Q Consensus 347 ~~~pVi~~p--~~-~~-~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~ 410 (438)
....|||+| .. .. ..||.. +++.++-.||||+|-. .+|...++-+.. |...++-..
T Consensus 75 ~i~lVInt~dp~~~~~~~~D~~~--IRR~Av~~~IP~~T~l-----~tA~a~~~al~~-~~~~~~~~~ 134 (142)
T PRK05234 75 KIDMLIFFRDPLTAQPHDPDVKA--LLRLADVWNIPVATNR-----ATADFLISSLLF-DDEVEILIP 134 (142)
T ss_pred ceeEEEEecCCCCCCcccchHHH--HHHHHHHcCCCEEcCH-----HHHHHHHHHHhc-ccchhhccc
Confidence 999999999 42 22 335555 9999999999999632 334444444444 555544333
No 95
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=98.54 E-value=3.1e-07 Score=76.69 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=80.3
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc---ccCcccccccC-CCCCc
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG---GAAHLPGMVAA-RTPLP 350 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag---~~~~l~~~i~~-~~~~p 350 (438)
+++.+++|++.+.+.++.|..+||++++| -+ |.+|+ ++.|++|..+.++ +.+++.++|.. .....
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~AT----~g----Ta~~L---~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idl 71 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLFAT----GG----TSRVL---ADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDV 71 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEEEC----cH----HHHHH---HHcCCceEEEEecCCCCCcHHHHHHhCCCCEEE
Confidence 77889999999999999999999999998 45 88888 4579998877663 56889999999 99999
Q ss_pred eEeccCCC----CCCCChhhHHHhhhCCCCCceEE
Q 013661 351 VIGVPVRA----SALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 351 Vi~~p~~~----~~~~g~~~l~s~~~~~~g~p~~t 381 (438)
|||+|.+. ...+|.. +++.+.-.||||.|
T Consensus 72 VIn~~~~~~~~~~~~dg~~--iRR~A~~~~Ip~~T 104 (112)
T cd00532 72 VINLRDPRRDRCTDEDGTA--LLRLARLYKIPVTT 104 (112)
T ss_pred EEEcCCCCcccccCCChHH--HHHHHHHcCCCEEE
Confidence 99999743 3455766 99999999999997
No 96
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.54 E-value=2.2e-06 Score=87.18 Aligned_cols=84 Identities=26% Similarity=0.299 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecC--CCCCC-cCeEEeCCHHHHHHHHHHhcCC-------C------CcEEEeeccC
Q 013661 2 EVNDLESARRAGKQFG-YPLMVKSKR--LAYDG-RGNAVAKSEEELSSAITALGGF-------D------RGLYVEKWAP 64 (438)
Q Consensus 2 ~v~s~ee~~~~~~~ig-yPvvvKP~~--~g~gg-~Gv~~v~~~~el~~~~~~~~~~-------~------~~~lvEe~I~ 64 (438)
.++|.+|+.++++++| ||+|+||.. ++.|+ -||.+++|++|+.++++.+... + ..++||+|++
T Consensus 24 ~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~ 103 (386)
T TIGR01016 24 VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATD 103 (386)
T ss_pred eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECcc
Confidence 3578999999999999 999999973 22222 3899999999999998776431 0 3599999999
Q ss_pred CCeEEEEEEEEcCC--CeEEEEe
Q 013661 65 FVKELAVIVVRGRD--KSILCYP 85 (438)
Q Consensus 65 g~~e~sv~~~~d~~--G~~~~~~ 85 (438)
+++|+.+.++.|.. |-++.++
T Consensus 104 ~g~E~~v~i~~d~~~~~pvi~~~ 126 (386)
T TIGR01016 104 IDKEYYLSIVIDRSARCPVIMAS 126 (386)
T ss_pred CCceEEEEEEEcCCCCceEEEEE
Confidence 67999999998753 3344443
No 97
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=98.45 E-value=3.6e-07 Score=76.56 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=79.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEE-e--ccccCcccccccCCCCC
Q 013661 275 IIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA-G--AGGAAHLPGMVAARTPL 349 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~-~--ag~~~~l~~~i~~~~~~ 349 (438)
.+..+++|++.+.+.++.|.++ ||++.+| -+ |.+|+++ ..|++|..+ . .|+.+++.++|......
T Consensus 3 ~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT----~g----Ta~~L~~--~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~ 72 (115)
T cd01422 3 ALIAHDNKKEDLVEFVKQHQELLSRHRLVAT----GT----TGLLIQE--ATGLTVNRMKSGPLGGDQQIGALIAEGEID 72 (115)
T ss_pred eEEecccchHHHHHHHHHHHHHhcCCEEEEe----ch----HHHHHHH--hhCCcEEEEecCCCCchhHHHHHHHcCcee
Confidence 3456899999999999999999 9999999 56 8888842 168887765 2 46778999999999999
Q ss_pred ceEeccCC-C--C-CCCChhhHHHhhhCCCCCceEE
Q 013661 350 PVIGVPVR-A--S-ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 350 pVi~~p~~-~--~-~~~g~~~l~s~~~~~~g~p~~t 381 (438)
.|||+|.+ + . ..||.. +++.++..+|||.|
T Consensus 73 ~VInt~~~~~~~~~~~dg~~--iRr~a~~~~Ip~~T 106 (115)
T cd01422 73 AVIFFRDPLTAQPHEPDVKA--LLRLCDVYNIPLAT 106 (115)
T ss_pred EEEEcCCCCCCCcccccHHH--HHHHHHHcCCCEEE
Confidence 99999974 2 2 456776 99999999999996
No 98
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.41 E-value=1.5e-06 Score=77.96 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHHHhcC-CCCcEEEeeccCC--CeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~~~~~-~~~~~lvEe~I~g--~~e~sv~~~~d~~ 78 (438)
..+.+++.++.++.+. +|+||..+. ||+||+++.. ...+...++.+.. ....+++|+|++. .-|.++.++ +
T Consensus 18 s~~~~~i~~f~~~~~~-~VlKPl~g~-gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GDkRii~~---n 92 (173)
T PF02955_consen 18 SRDKEEIRAFIEEHGD-IVLKPLDGM-GGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEGDKRIILF---N 92 (173)
T ss_dssp ES-HHHHHHHHHHHSS-EEEEESS---TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEE---T
T ss_pred ECCHHHHHHHHHHCCC-EEEEECCCC-CCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCCCEEEEEE---C
Confidence 3578999999999999 999998765 9999999987 4456666665532 2245999999994 237888777 5
Q ss_pred CeEEE----EeeeeeEEe---cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcce--EEEEEEEEeCCCcEEEEEEcC
Q 013661 79 KSILC----YPVVETIHK---ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAG--IFAVELFWTNNGQILLNEVAP 149 (438)
Q Consensus 79 G~~~~----~~~~e~~~~---~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G--~~~ve~~~~~~g~~~viEiNp 149 (438)
|+... .|....+.. .|.. ..+..++++ -+++++++...|.-.| +.++|++ ++ |+.|||-
T Consensus 93 G~~~~av~R~P~~gd~R~N~~~Gg~---~~~~~lt~~----e~~i~~~i~~~L~~~Gl~f~GiDvi---g~--~l~EiNv 160 (173)
T PF02955_consen 93 GEPSHAVRRIPAKGDFRSNLAAGGS---AEPAELTER----EREICEQIGPKLREDGLLFVGIDVI---GD--KLTEINV 160 (173)
T ss_dssp TEE-SEEEEE--SS-S---GGGTSC---EEEEE--HH----HHHHHHHHHHHHHHTT--EEEEEEE---TT--EEEEEE-
T ss_pred CEEhHHeecCCCCCCceeeeccCCc---eeecCCCHH----HHHHHHHHHHHHhhcCcEEEEEecc---cc--ceEEEec
Confidence 66432 222111110 1211 123345554 3455555555554345 5778866 23 7899997
Q ss_pred CC
Q 013661 150 RP 151 (438)
Q Consensus 150 R~ 151 (438)
--
T Consensus 161 ts 162 (173)
T PF02955_consen 161 TS 162 (173)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 99
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.36 E-value=1.7e-05 Score=80.80 Aligned_cols=81 Identities=28% Similarity=0.333 Sum_probs=65.0
Q ss_pred ccCCHHHHHHHHHhh-CCcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC---------C----CcEEEeecc
Q 013661 2 EVNDLESARRAGKQF-GYPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF---------D----RGLYVEKWA 63 (438)
Q Consensus 2 ~v~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~---------~----~~~lvEe~I 63 (438)
.++|.+|+.++++++ |||+++||.... +|+ ||.+.+|++|+.++++.+... . ..++||+++
T Consensus 24 ~~~~~~ea~~~a~~i~g~PvVvK~~~~~-ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~ 102 (388)
T PRK00696 24 VATTPEEAVEAAEELGGGVWVVKAQVHA-GGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGA 102 (388)
T ss_pred eeCCHHHHHHHHHHcCCCcEEEEEeeCC-CCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEecc
Confidence 367899999999999 999999997542 455 999999999999999876421 1 249999999
Q ss_pred CCCeEEEEEEEEcCC-CeEEE
Q 013661 64 PFVKELAVIVVRGRD-KSILC 83 (438)
Q Consensus 64 ~g~~e~sv~~~~d~~-G~~~~ 83 (438)
+++.|+.+.+.+|.. |.++.
T Consensus 103 ~~~~E~~vg~~~D~~fgpvv~ 123 (388)
T PRK00696 103 DIAKEYYLSIVLDRATRRVVF 123 (388)
T ss_pred CCCceEEEEEEEcCCCCceEE
Confidence 977999999999864 44443
No 100
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.35 E-value=1.2e-05 Score=78.17 Aligned_cols=145 Identities=16% Similarity=0.239 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHH------HH---HHHHHhcCCCCcEEEeeccCCCe-----
Q 013661 3 VNDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEE------LS---SAITALGGFDRGLYVEKWAPFVK----- 67 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v~~~~e------l~---~~~~~~~~~~~~~lvEe~I~g~~----- 67 (438)
..+.+++.+++... ..++++||+.++ +|+|+.+++..+. +. ......... .+||||+|....
T Consensus 58 ~~~~~~l~~~l~~~~~~~~viKP~~G~-~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~liqe~i~qh~~~~~~ 134 (285)
T PF14397_consen 58 QHSIEDLEEFLRKHAPDRFVIKPANGS-GGKGILVIDRRDGSEINRDISALYAGLESLGGK--DYLIQERIEQHPELAAL 134 (285)
T ss_pred ccCHHHHHHHHHhccCCcEEEEeCCCC-CccCEEEEEeecCcccccchhHHHHHHHhcCCc--cEEEEecccCCHHHHhh
Confidence 35778999998764 689999998765 9999999876551 22 222221222 599999998321
Q ss_pred ------EEEEEEEEcCCCeEEEEeee----------eeEEecCeE--------------------EEEEeCCC------C
Q 013661 68 ------ELAVIVVRGRDKSILCYPVV----------ETIHKENIC--------------------HIVKAPAA------V 105 (438)
Q Consensus 68 ------e~sv~~~~d~~G~~~~~~~~----------e~~~~~g~~--------------------~~~~~p~~------l 105 (438)
.+.+..+.+. |++.+.... .+...+|.. ....-|.. +
T Consensus 135 ~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~ 213 (285)
T PF14397_consen 135 SPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGF 213 (285)
T ss_pred CCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCc
Confidence 3666666665 543322111 111111100 00011211 1
Q ss_pred CHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCC--CC
Q 013661 106 PWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR--PH 152 (438)
Q Consensus 106 ~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR--~~ 152 (438)
.=...+++.+++.++.+.+...+.++.|+.+|++| +.+||.|.+ |+
T Consensus 214 ~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~llE~N~~~~pg 261 (285)
T PF14397_consen 214 QIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLLEGNARWDPG 261 (285)
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEEEeeCCCCCC
Confidence 11346788999999998888789999999999989 999999999 55
No 101
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.34 E-value=2e-06 Score=71.46 Aligned_cols=95 Identities=21% Similarity=0.261 Sum_probs=78.7
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec--cccCcccccccCCCCCce
Q 013661 274 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPV 351 (438)
Q Consensus 274 ~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pV 351 (438)
++++.+++|++.+.+.++.|.++||+++++ -+ |.+|+ ++.|++|..+.. ++...+..++.......|
T Consensus 3 vl~s~~~~~k~~~~~~~~~l~~~G~~l~aT----~g----T~~~l---~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~v 71 (110)
T cd01424 3 VFISVADRDKPEAVEIAKRLAELGFKLVAT----EG----TAKYL---QEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLV 71 (110)
T ss_pred EEEEEEcCcHhHHHHHHHHHHHCCCEEEEc----hH----HHHHH---HHcCCeEEEEeecCCCchhHHHHHHcCCeEEE
Confidence 378889999999999999999999999988 44 88888 457999776544 567889999999999999
Q ss_pred EeccCCCC-CCCChhhHHHhhhCCCCCceEE
Q 013661 352 IGVPVRAS-ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 352 i~~p~~~~-~~~g~~~l~s~~~~~~g~p~~t 381 (438)
|++|.... ..+|.. +|+.++..||||.|
T Consensus 72 In~~~~~~~~~~~~~--iRR~Av~~~ipl~T 100 (110)
T cd01424 72 INTPSGKRAIRDGFS--IRRAALEYKVPYFT 100 (110)
T ss_pred EECCCCCccCccHHH--HHHHHHHhCCCEEe
Confidence 99987422 234554 99999999999996
No 102
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.28 E-value=1.6e-05 Score=76.12 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=96.7
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-------CCcEEEeeccCCCeEEEEEEEEc-CCCeEEEEee
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-------DRGLYVEKWAPFVKELAVIVVRG-RDKSILCYPV 86 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-------~~~~lvEe~I~g~~e~sv~~~~d-~~G~~~~~~~ 86 (438)
++.-||+||... .-||||-+++.|.+|+.+..+.+... -.++.|||||-| ..+.+..+.. -.+++-.++.
T Consensus 148 eIdr~VIVK~pg-AkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~ 225 (361)
T COG1759 148 EIDRPVIVKLPG-AKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGI 225 (361)
T ss_pred HcCCceEEecCC-ccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeee
Confidence 456799999964 44799999999999999988876421 145899999997 5555554432 1223333333
Q ss_pred eeeEEec--C--------------eEEEE---EeCCCCCHHHHHHHHHHHHHHHHhc------CcceEEEEEEEEeCCCc
Q 013661 87 VETIHKE--N--------------ICHIV---KAPAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQ 141 (438)
Q Consensus 87 ~e~~~~~--g--------------~~~~~---~~p~~l~~~~~~~i~~~a~~i~~~l------g~~G~~~ve~~~~~~g~ 141 (438)
...++.+ | ....+ ..|..+-+.+..++-+++.+++++- |+.|+|..|.++++|=+
T Consensus 226 D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~ 305 (361)
T COG1759 226 DRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLE 305 (361)
T ss_pred eheeeccchhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCcc
Confidence 2222221 1 01111 1366688888999999888887766 77899999999999878
Q ss_pred EEEEEEcCCCCC
Q 013661 142 ILLNEVAPRPHN 153 (438)
Q Consensus 142 ~~viEiNpR~~~ 153 (438)
+++.|+.+|.++
T Consensus 306 ~vVfevS~Ri~g 317 (361)
T COG1759 306 FVVFEVSARIVG 317 (361)
T ss_pred EEEEEEeccccC
Confidence 999999999985
No 103
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=98.24 E-value=1.8e-06 Score=72.57 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=77.7
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec--c----ccCcccccccCCCC
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--G----GAAHLPGMVAARTP 348 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a--g----~~~~l~~~i~~~~~ 348 (438)
+++.++.|++.+.+.++.|..+||++.++ .+ |.+|+ ++.|++|..+.. + ..+++-++|.....
T Consensus 4 lisv~~~dk~~~~~~a~~l~~~G~~i~aT----~g----Ta~~L---~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 4 LISIGSYSKPELLPTAQKLSKLGYKLYAT----EG----TADFL---LENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEecCcccchhHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 77888889999999999999999999988 77 88888 466888776633 2 23788999999999
Q ss_pred CceEeccCCCC---CCCChhhHHHhhhCCCCCceEE
Q 013661 349 LPVIGVPVRAS---ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 349 ~pVi~~p~~~~---~~~g~~~l~s~~~~~~g~p~~t 381 (438)
..|||+|..+. ..+|.. +|+.++..||||.|
T Consensus 73 dlVIn~~~~~~~~~~~~~~~--iRr~Av~~~ip~iT 106 (116)
T cd01423 73 DLVINLPSNRGKRVLDNDYV--MRRAADDFAVPLIT 106 (116)
T ss_pred eEEEECCCCCCCccccCcEe--eehhhHhhCCcccc
Confidence 99999998543 235666 99999999999986
No 104
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.92 E-value=3.5e-05 Score=75.13 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=77.7
Q ss_pred HHHHHH--HhhCCcEEEEecC--CCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCCCeEE
Q 013661 8 SARRAG--KQFGYPLMVKSKR--LAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 8 e~~~~~--~~igyPvvvKP~~--~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~e~sv~~~~d~~G~~~ 82 (438)
++.+.. ..+.||+|+||.. |+..+..|.++.++++|.+. ..| +++||||. |+.=|-|-++++.- .++
T Consensus 127 ~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-----~~P--~VlQeFVNHggvLfKVyVvGd~v-~~v 198 (307)
T PF05770_consen 127 SLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL-----KPP--CVLQEFVNHGGVLFKVYVVGDKV-FVV 198 (307)
T ss_dssp CHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-------SS--EEEEE----TTEEEEEEEETTEE-EEE
T ss_pred HHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhc-----CCC--EEEEEeecCCCEEEEEEEecCEE-EEE
Confidence 344443 3677999999976 44477899999999999763 446 99999998 67888888874311 111
Q ss_pred EEeeeeeEEec------CeEEE---E----------E--eCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC--
Q 013661 83 CYPVVETIHKE------NICHI---V----------K--APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-- 139 (438)
Q Consensus 83 ~~~~~e~~~~~------g~~~~---~----------~--~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-- 139 (438)
.-+..-++... +.... + . .+......-.+.+.+++..+=++||+ .+|++|++++..
T Consensus 199 ~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~ 277 (307)
T PF05770_consen 199 KRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTG 277 (307)
T ss_dssp EEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-
T ss_pred ECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCC
Confidence 11111112111 00000 0 0 01111111234578888888889997 699999999753
Q ss_pred CcEEEEEEcCCCC
Q 013661 140 GQILLNEVAPRPH 152 (438)
Q Consensus 140 g~~~viEiNpR~~ 152 (438)
|++|||+||.=||
T Consensus 278 ~~~~VIDINyFPg 290 (307)
T PF05770_consen 278 GRYYVIDINYFPG 290 (307)
T ss_dssp SSEEEEEEEES--
T ss_pred CcEEEEEeccCCC
Confidence 5799999999998
No 105
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.78 E-value=0.00027 Score=69.08 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013661 19 PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64 (438)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~ 64 (438)
-.|+||..++ .|+|+.++++.+++.+. .....+.++||+||+
T Consensus 67 ~wI~KP~~~~-rG~GI~l~~~~~~i~~~---~~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGS-RGRGIKLFNNLEQILRF---SKNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES--------EEEES-HHHHHCC---HCCTTS-EEEEE--S
T ss_pred EEEEeccccC-CCCCceecCCHHHHHHH---hhhhhhhhhhhhccC
Confidence 3899997765 89999999999988754 122335599999998
No 106
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.71 E-value=0.00047 Score=61.91 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=75.9
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee---eeEE
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV---ETIH 91 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~---e~~~ 91 (438)
.-.||+|||--.. .+|.|=.+|+|..++.+...-+.....-+.+|.||+-..++.++-+. .++..|-+. .+..
T Consensus 48 ~~~fPvVvKvG~~-h~G~GKvkv~n~~~~qDi~sll~~~~~Y~T~EPfId~kyDirvqkIG---~~ykA~~R~sis~nWK 123 (203)
T PF02750_consen 48 APRFPVVVKVGHA-HAGMGKVKVDNQQDFQDIASLLAITKDYATTEPFIDAKYDIRVQKIG---NNYKAYMRTSISGNWK 123 (203)
T ss_dssp -SSSSEEEEESS--STTTTEEEE-SHHHHHHHHHHHHHHTS-EEEEE---EEEEEEEEEET---TEEEEEEEEESSSTSS
T ss_pred CCCCCEEEEEccc-cCceeEEEEccHHHHHHHHHHHHhcCceEEeeccccceeEEEEEEEc---CeEEEEEEcccccccc
Confidence 3479999999543 37899999999998887654432222337999999854566666663 245444432 1111
Q ss_pred e-cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCC
Q 013661 92 K-ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 92 ~-~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
. .|.....-.+ +++ +.+..+.++.+.+|.--++.+|.+..+||+-|++|+|--.
T Consensus 124 ~N~gsa~lEqi~--~~~----ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~ 178 (203)
T PF02750_consen 124 ANTGSAMLEQIA--MTE----RYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSS 178 (203)
T ss_dssp TTSSSEEEEEE-----H----HHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT
T ss_pred ccccchheeecC--CCh----HHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCc
Confidence 1 2333333222 333 4566777778888766899999999999999999999763
No 107
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=97.30 E-value=0.00044 Score=55.16 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEE-EEec--cccCcccccccCCCCCceEeccCC-C--C
Q 013661 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEII-IAGA--GGAAHLPGMVAARTPLPVIGVPVR-A--S 359 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~-i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~--~ 359 (438)
+.+.++.|.++||++.+| -+ |.+|+ ++.|++|- .+.+ ++..++..++.......|||+|.+ . .
T Consensus 2 ~~~~~~~l~~lG~~i~AT----~g----Ta~~L---~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~ 70 (90)
T smart00851 2 LVELAKRLAELGFELVAT----GG----TAKFL---REAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQP 70 (90)
T ss_pred HHHHHHHHHHCCCEEEEc----cH----HHHHH---HHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCccee
Confidence 356788899999999998 45 78888 45798874 3322 445678889999999999999974 2 2
Q ss_pred CCCChhhHHHhhhCCCCCceEE
Q 013661 360 ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 360 ~~~g~~~l~s~~~~~~g~p~~t 381 (438)
..||.. +|+.+.-.||||.|
T Consensus 71 ~~d~~~--iRr~A~~~~Ip~~T 90 (90)
T smart00851 71 HEDGKA--LRRAAENIDIPGAT 90 (90)
T ss_pred ccCcHH--HHHHHHHcCCCeeC
Confidence 335665 89999999999975
No 108
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=97.28 E-value=0.0027 Score=59.47 Aligned_cols=85 Identities=27% Similarity=0.330 Sum_probs=56.1
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCC----CCcCeEE-eCCHHHHHHHHHHhcC---------CCCcEEEeeccC-CC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAY----DGRGNAV-AKSEEELSSAITALGG---------FDRGLYVEKWAP-FV 66 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~----gg~Gv~~-v~~~~el~~~~~~~~~---------~~~~~lvEe~I~-g~ 66 (438)
.++|.+|+.++++++|||+++|-..-.. .--||.+ ++|+++++++++.+.. ....++||+.++ ++
T Consensus 31 ~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g 110 (222)
T PF13549_consen 31 LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGG 110 (222)
T ss_dssp EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------
T ss_pred EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCc
Confidence 3678999999999999999999864211 1136777 8999999999987521 124699999999 67
Q ss_pred eEEEEEEEEcCC-CeEEEEee
Q 013661 67 KELAVIVVRGRD-KSILCYPV 86 (438)
Q Consensus 67 ~e~sv~~~~d~~-G~~~~~~~ 86 (438)
.|+.+-+.+|.. |.++.++.
T Consensus 111 ~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 111 RELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEEEECCCCCCEEEEcC
Confidence 999999998753 55555543
No 109
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=97.20 E-value=6.1e-05 Score=60.80 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEE----eccccCc----ccccccCCCCCceEeccCC
Q 013661 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA----GAGGAAH----LPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~----~ag~~~~----l~~~i~~~~~~pVi~~p~~ 357 (438)
+.+.++.|.++||++.+| -+ |++|+ ++.|++|.-+ ..+...+ +..+|.......|||+|.+
T Consensus 2 ~~~~a~~l~~lG~~i~AT----~g----Ta~~L---~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~ 70 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYAT----EG----TAKFL---KEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP 70 (95)
T ss_dssp HHHHHHHHHHTTSEEEEE----HH----HHHHH---HHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T
T ss_pred HHHHHHHHHHCCCEEEEC----hH----HHHHH---HHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC
Confidence 567889999999999999 45 89999 5679994433 2232445 8889999999999999986
Q ss_pred C--CCC-CChhhHHHhhhCCCCCceEE
Q 013661 358 A--SAL-DGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 358 ~--~~~-~g~~~l~s~~~~~~g~p~~t 381 (438)
. ... ||.. +|+++...+|||.|
T Consensus 71 ~~~~~~~dg~~--irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 71 FSDQEHTDGYK--IRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHTHHHHH--HHHHHHHTTSHEEC
T ss_pred CcccccCCcHH--HHHHHHHcCCCCcC
Confidence 2 223 6766 89999999999986
No 110
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.14 E-value=0.013 Score=52.20 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=62.1
Q ss_pred CcEEEeeccCCCeEEEEEEEEcC-CCeEEEEeeeeeEEec--Ce--------------EEE---EEeCCCCCHHHHHHHH
Q 013661 55 RGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVETIHKE--NI--------------CHI---VKAPAAVPWKISELAT 114 (438)
Q Consensus 55 ~~~lvEe~I~g~~e~sv~~~~d~-~G~~~~~~~~e~~~~~--g~--------------~~~---~~~p~~l~~~~~~~i~ 114 (438)
..+.||||+-| ..+.+..+.+. .+++-.++....++.+ |. ... -..|..+-+.+..++-
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~vlRESLL~~vf 99 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAVLRESLLPKVF 99 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEEE-GGGHHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccchhHhhHHHHH
Confidence 45999999997 77777765532 3455455544333331 10 111 1246667788888888
Q ss_pred HHHHHHHHhc------CcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 115 DVAHKAVSSL------EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 115 ~~a~~i~~~l------g~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+++.+++++. |..|+|.+|.++|++.++++.|+.+|..+
T Consensus 100 e~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~g 144 (188)
T PF06973_consen 100 EMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVG 144 (188)
T ss_dssp HHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-G
T ss_pred HHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccC
Confidence 8888877766 78899999999999999999999999985
No 111
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=97.10 E-value=0.0019 Score=53.17 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred EEeecCCccCCCcchhhhchhhhhccC---Cc--EEEEeccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCc
Q 013661 192 YNLLGEAEGERGFYLAHQLIGKALSIP---GA--TVHWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDC 264 (438)
Q Consensus 192 ~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~--~~~~~~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~ 264 (438)
+|++++ +|...|.|..+.+.. ...| ++ |..++.+..+.+ ++.++++|+.|.|+++|++++.++++++
T Consensus 2 ~Ri~AE-dp~~~F~P~~G~i~~-~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~---- 75 (107)
T smart00878 2 CRINAE-DPANGFLPSPGRITR-YRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEF---- 75 (107)
T ss_pred eEEEee-CCCCCcccCCCEEeE-EEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhC----
Confidence 345554 344456654333322 2233 33 233333344443 5778999999999999999999999875
Q ss_pred cccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE
Q 013661 265 QFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV 302 (438)
Q Consensus 265 ~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~ 302 (438)
.|.|..++.+++..+...-+.....+.+
T Consensus 76 ----------~i~Gv~TN~~~l~~ll~~~~f~~g~~~T 103 (107)
T smart00878 76 ----------RIEGVKTNIPFLRALLRHPDFRAGDVDT 103 (107)
T ss_pred ----------EEECccCCHHHHHHHhcCHhhhcCcccc
Confidence 3467789999999877664444444443
No 112
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=97.08 E-value=0.0016 Score=53.71 Aligned_cols=91 Identities=20% Similarity=0.298 Sum_probs=62.4
Q ss_pred EEeecCCccCCCcchhhhchhhhhccC---CcE--EEEeccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCc
Q 013661 192 YNLLGEAEGERGFYLAHQLIGKALSIP---GAT--VHWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDC 264 (438)
Q Consensus 192 ~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~~--~~~~~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~ 264 (438)
+|++++ +|...|.|..+.+.. ...| ++. ..++.+..+.+ ++.++++++.|.|+++|++++.++++++
T Consensus 2 ~Ri~AE-dP~~~F~Ps~G~i~~-~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~---- 75 (107)
T PF02785_consen 2 ARIYAE-DPANGFLPSPGRITR-YSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAET---- 75 (107)
T ss_dssp EEEESB-ETTTTTEBSSEEESE-EE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHH----
T ss_pred cEEeec-CCCCCCcCCcEEEeE-EECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceE----
Confidence 566776 455567764433332 2334 443 33444445544 6789999999999999999999999975
Q ss_pred cccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC
Q 013661 265 QFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV 298 (438)
Q Consensus 265 ~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~ 298 (438)
.|.|..++.+++..+...-+....
T Consensus 76 ----------~I~Gv~TNi~fl~~ll~~~~f~~g 99 (107)
T PF02785_consen 76 ----------VIEGVKTNIPFLRALLAHPEFRSG 99 (107)
T ss_dssp ----------EEESSSHSHHHHHHHHTSHHHHTT
T ss_pred ----------EEECccCCHHHHHHHhCCcccccC
Confidence 468888999999998866554443
No 113
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=97.04 E-value=0.011 Score=50.66 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=70.9
Q ss_pred CcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEecCeEE
Q 013661 18 YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICH 97 (438)
Q Consensus 18 yPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~~g~~~ 97 (438)
-|+.|||.... -.--=.++.+.++|...-.. ..+..+++.+.++...|+.+-++ +|+++.... ++...
T Consensus 2 ~~~FiKP~~~~-K~F~g~V~~~~~dl~~~~~~--~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~----Y~~~~-- 69 (130)
T PF14243_consen 2 RPVFIKPPDDD-KSFTGRVFRSGEDLIGFGSL--DPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSP----YRGDW-- 69 (130)
T ss_pred CCeEeCCCCCC-CcceeEEEcchhhccccCCC--CCCceEEEeceEeeeeeEEEEEE---CCEEEEEee----cCCCc--
Confidence 48999997622 12222466666666532211 22345999999998899999888 577765543 22111
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhc-CcceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013661 98 IVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 98 ~~~~p~~l~~~~~~~i~~~a~~i~~~l-g~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
....+.+. .+.+.+.+++. ..--.+.+|+-++.+|..+|+|+|+--+
T Consensus 70 ----~~~~~~~~----~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 70 ----DLEPDPDV----VAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred ----ccCCCHHH----HHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCccc
Confidence 11123443 33444444433 2236788999999888899999999765
No 114
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.98 E-value=0.025 Score=58.03 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=56.1
Q ss_pred ccCCHHHHHHHHHhh---CCcEEEEecCCCCCCcC-----------eEEeCCHHHHHHHHHHhcCC-------------C
Q 013661 2 EVNDLESARRAGKQF---GYPLMVKSKRLAYDGRG-----------NAVAKSEEELSSAITALGGF-------------D 54 (438)
Q Consensus 2 ~v~s~ee~~~~~~~i---gyPvvvKP~~~g~gg~G-----------v~~v~~~~el~~~~~~~~~~-------------~ 54 (438)
.++|++|+.++++++ ++|+|+|+.... |||| |.++++ +|+.++++++.+. .
T Consensus 51 va~t~eea~~aa~~l~~~~~pvVvKaqv~~-GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v 128 (422)
T PLN00124 51 AASSLDEVKKALEKMFPDEGEVVVKSQILA-GGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPV 128 (422)
T ss_pred eeCCHHHHHHHHHHhcccCCcEEEEEEecc-CCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCcee
Confidence 367899999999999 699999997432 4444 567766 9999988776432 1
Q ss_pred CcEEEeeccCCCeEEEEEEEEcC
Q 013661 55 RGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 55 ~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
..++|+|.+...+|+-+-+..|.
T Consensus 129 ~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 129 NKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred ceEEEEEeecCCceEEEEEEecc
Confidence 35887777776689999998885
No 115
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.94 E-value=0.03 Score=57.06 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHhhCCc-EEEEecCCC---CCCcCeEEeCCHHHHHHHHHHhcCC-------------CCcEEEeeccCC
Q 013661 3 VNDLESARRAGKQFGYP-LMVKSKRLA---YDGRGNAVAKSEEELSSAITALGGF-------------DRGLYVEKWAPF 65 (438)
Q Consensus 3 v~s~ee~~~~~~~igyP-vvvKP~~~g---~gg~Gv~~v~~~~el~~~~~~~~~~-------------~~~~lvEe~I~g 65 (438)
++|.+|+.++++++||| +++|..... .-+-||.+..|++|+.++++.+.+. ...++||++++.
T Consensus 25 ~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~ 104 (392)
T PRK14046 25 AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPI 104 (392)
T ss_pred ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCC
Confidence 67899999999999995 599974321 1224789999999999998876432 146999999998
Q ss_pred CeEEEEEEEEcCC-CeEEEE
Q 013661 66 VKELAVIVVRGRD-KSILCY 84 (438)
Q Consensus 66 ~~e~sv~~~~d~~-G~~~~~ 84 (438)
++|+-+-+..|.. |.++.+
T Consensus 105 ~~E~ylgi~~D~~~g~~v~~ 124 (392)
T PRK14046 105 ERELYLGFVLDRKSERVRVI 124 (392)
T ss_pred CcEEEEEEEECCCCCcEEEE
Confidence 8999999998754 444444
No 116
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.85 E-value=0.055 Score=55.05 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHh---hCCc-EEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCCC----------CcEEEeeccC
Q 013661 3 VNDLESARRAGKQ---FGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGFD----------RGLYVEKWAP 64 (438)
Q Consensus 3 v~s~ee~~~~~~~---igyP-vvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~~----------~~~lvEe~I~ 64 (438)
+++.+|+.+++++ +|.| +||||-... ||| ||.+++|++|+.++.+++.+.. ..+|||++++
T Consensus 34 ~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~-GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~ 112 (423)
T PLN02235 34 VTESTDFNELANKEPWLSSTKLVVKPDMLF-GKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVP 112 (423)
T ss_pred cCCHHHHHHHHHhhhhhCCCcEEEEccccc-CCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCC
Confidence 4789999999988 8875 699997654 666 5899999999999988764322 4689999999
Q ss_pred CCeEEEEEEEEcCCCeE
Q 013661 65 FVKELAVIVVRGRDKSI 81 (438)
Q Consensus 65 g~~e~sv~~~~d~~G~~ 81 (438)
-.+|+-+.++.|.....
T Consensus 113 i~~E~Ylsi~~DR~~~~ 129 (423)
T PLN02235 113 HDQEFYLSIVSDRLGCS 129 (423)
T ss_pred CcceEEEEEEEecCCCE
Confidence 77898888887766554
No 117
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=96.79 E-value=0.01 Score=54.75 Aligned_cols=77 Identities=32% Similarity=0.416 Sum_probs=56.8
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC-------------CCcEEEeecc
Q 013661 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF-------------DRGLYVEKWA 63 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~-------------~~~~lvEe~I 63 (438)
.++|++|+.++++.+|.| +||||-... ||| ||.+++|++|..++...+.+. ...++||+++
T Consensus 23 ~a~s~eea~~~~~~l~~~~~VvKaQvl~-GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v 101 (202)
T PF08442_consen 23 VATSPEEAREAAKELGGKPLVVKAQVLA-GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFV 101 (202)
T ss_dssp EESSHHHHHHHHHHHTTSSEEEEE-SSS-STTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE--
T ss_pred ecCCHHHHHHHHHHhCCCcEEEEEeEee-cCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecC
Confidence 368999999999999985 799996644 565 689999999999988876321 1678999999
Q ss_pred CCCeEEEEEEEEcCCC
Q 013661 64 PFVKELAVIVVRGRDK 79 (438)
Q Consensus 64 ~g~~e~sv~~~~d~~G 79 (438)
+-.+|+-+.+..|.+.
T Consensus 102 ~~~~E~Ylsi~~DR~~ 117 (202)
T PF08442_consen 102 DIKREYYLSITLDRES 117 (202)
T ss_dssp -CCEEEEEEEEEETTT
T ss_pred ccCceEEEEEEeccCC
Confidence 9878988887776543
No 118
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.68 E-value=0.012 Score=58.43 Aligned_cols=78 Identities=32% Similarity=0.367 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHhhC-CcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcC----C------CCcEEEeeccC-C
Q 013661 2 EVNDLESARRAGKQFG-YPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGG----F------DRGLYVEKWAP-F 65 (438)
Q Consensus 2 ~v~s~ee~~~~~~~ig-yPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~----~------~~~~lvEe~I~-g 65 (438)
.+.|++|+.++++++| .|+|||+-... ||| ||.+++|.+|..++.+.+.+ . ...+|||++++ -
T Consensus 24 v~~s~eea~~~a~~lg~~~~VvKaQV~a-GGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~ 102 (387)
T COG0045 24 VATSPEEAEEAAKELGGGPVVVKAQVHA-GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDII 102 (387)
T ss_pred eeeCHHHHHHHHHHhCCCcEEEEeeeee-cCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCc
Confidence 4679999999999998 89999996643 555 79999999999999887654 1 27899999998 4
Q ss_pred CeEEEEEEEEcCCCe
Q 013661 66 VKELAVIVVRGRDKS 80 (438)
Q Consensus 66 ~~e~sv~~~~d~~G~ 80 (438)
.+||-+.++.|...+
T Consensus 103 ~~E~Ylsiv~DR~~~ 117 (387)
T COG0045 103 KKEYYLSIVLDRSSR 117 (387)
T ss_pred cceEEEEEEEEcCCC
Confidence 349888888776654
No 119
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=96.67 E-value=0.053 Score=51.42 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=75.6
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHH---HHHHHh-c-------------CCCCcEEEeeccCC--C---eEEEEE
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELS---SAITAL-G-------------GFDRGLYVEKWAPF--V---KELAVI 72 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~---~~~~~~-~-------------~~~~~~lvEe~I~g--~---~e~sv~ 72 (438)
.+.-++|+||..++ |+..+..-.+..+.. ..+... . .-.++++||++|+. + .+|-+-
T Consensus 54 ~Lp~~fViK~nhgs-g~~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~ 132 (239)
T PF14305_consen 54 SLPDKFVIKPNHGS-GSNIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFF 132 (239)
T ss_pred cCCCCEEEEEecCC-CcEEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEE
Confidence 34567999996654 554544444333332 222221 0 11378999999983 2 467776
Q ss_pred EEEcCCCeEEEEeeeeeE----Ee-----cCe---EEEEEeC-CC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC
Q 013661 73 VVRGRDKSILCYPVVETI----HK-----ENI---CHIVKAP-AA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN 138 (438)
Q Consensus 73 ~~~d~~G~~~~~~~~e~~----~~-----~g~---~~~~~~p-~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~ 138 (438)
++ +|++..+-+.... .+ +.. .....++ .. -.++..++|.++|+++.+.+. .++|||..+
T Consensus 133 cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~- 205 (239)
T PF14305_consen 133 CF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNV- 205 (239)
T ss_pred EE---CCEEEEEEEEeCCCCCeEEEEECcccCCCccccCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEe-
Confidence 66 5654333222110 00 000 0001111 11 244667888999998888755 679999887
Q ss_pred CCcEEEEEEcCCCCC
Q 013661 139 NGQILLNEVAPRPHN 153 (438)
Q Consensus 139 ~g~~~viEiNpR~~~ 153 (438)
+|.+||-|+-..|++
T Consensus 206 ~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 206 DGKIYFGELTFTPGA 220 (239)
T ss_pred CCcEEEEeeecCCCC
Confidence 567999999999985
No 120
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.91 E-value=0.075 Score=51.93 Aligned_cols=147 Identities=22% Similarity=0.226 Sum_probs=93.8
Q ss_pred CccCCHHHHHHHHHhh--CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----CCCCcEEEeeccCCCeEEEEEE
Q 013661 1 MEVNDLESARRAGKQF--GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----GFDRGLYVEKWAPFVKELAVIV 73 (438)
Q Consensus 1 ~~v~s~ee~~~~~~~i--gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----~~~~~~lvEe~I~g~~e~sv~~ 73 (438)
+++-|.+|+..++..+ +-|+=+||..+. ||+|..++.|.++|+.++..+. ... +++|+-++...-|||--
T Consensus 118 ~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~-gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~G--lVLE~~L~~~~T~SVGq 194 (355)
T PF11379_consen 118 YTVFSREDARRAARRLLRDGPVRLKPVHAT-GGRGQQVVADADELDAALAALDDAELARHG--LVLEEDLEEVVTYSVGQ 194 (355)
T ss_pred ccccCHHHHHHHHHHHhccCCeeeccCccc-CCCCceEecCHHHHHHHHHcCCHHHHHhCC--EEEecccCCCceeeEEE
Confidence 3567899999988865 579999998765 9999999999999999998653 345 99999999767788875
Q ss_pred EEcCCCeEEEEeeeeeEEecCe-------EEEEEe--------CCCCCHHHHHHHHHHHH---HHHHhcCcceE----EE
Q 013661 74 VRGRDKSILCYPVVETIHKENI-------CHIVKA--------PAAVPWKISELATDVAH---KAVSSLEGAGI----FA 131 (438)
Q Consensus 74 ~~d~~G~~~~~~~~e~~~~~g~-------~~~~~~--------p~~l~~~~~~~i~~~a~---~i~~~lg~~G~----~~ 131 (438)
++- .|-...|--+++...++. +...+. ...+++.++..|.+... .+.. .|-|+ -|
T Consensus 195 v~v-~g~~~SY~GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~qA~~Yd~Aa~~--~yPgf~ASRRN 271 (355)
T PF11379_consen 195 VRV-AGLVASYYGTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQARAYDAAAQA--CYPGFFASRRN 271 (355)
T ss_pred EEE-CCEEEEEeeEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--hCchhheeecc
Confidence 542 445556655555544321 111111 22467666555543211 1222 23343 23
Q ss_pred EEEEE--eCCCcEE--EEEEcCCCCC
Q 013661 132 VELFW--TNNGQIL--LNEVAPRPHN 153 (438)
Q Consensus 132 ve~~~--~~~g~~~--viEiNpR~~~ 153 (438)
-|+.. +..|... |+|=.=|.|+
T Consensus 272 YDVa~G~da~G~~r~GVLEQSWRvGG 297 (355)
T PF11379_consen 272 YDVAQGLDAQGRWRSGVLEQSWRVGG 297 (355)
T ss_pred ceeeeccCCCCCeeeceeeeeeccCC
Confidence 44443 3345433 7888888885
No 121
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.15 E-value=0.05 Score=54.65 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=65.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++..+-+....++.+.|+..|+.++..+.+.+-+.+.+.+..+.+++.+++++|++.|++. .....++.....
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~ 102 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDK 102 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 3456777655555677788888998898766555555556777777888888889999999887754 666677766778
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.||+.
T Consensus 103 p~i~VPTt 110 (349)
T cd08550 103 PIVIVPTI 110 (349)
T ss_pred CEEEeCCc
Confidence 99999984
No 122
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.82 E-value=0.081 Score=53.13 Aligned_cols=87 Identities=21% Similarity=0.170 Sum_probs=65.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
+++.|+++....+....++.+.|+..|+.+.......+-+-+.+.+..+.+++.+++++|++.|++. ...-.++.....
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~ 102 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA 102 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence 4566787765555778888889999999875444455666676777777788889999999988764 566666666679
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.+|+.
T Consensus 103 P~iaIPTT 110 (351)
T cd08170 103 PVVIVPTI 110 (351)
T ss_pred CEEEeCCc
Confidence 99999985
No 123
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.025 Score=55.13 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh--cCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEe---eeeeEE
Q 013661 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL--GGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYP---VVETIH 91 (438)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~--~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~---~~e~~~ 91 (438)
.||+|||--. +..|.|=.+|+|.+|+.+...-. ...- .-+|.||+...++.|+-+.. ++-.|- +..+..
T Consensus 239 tyPvVVkvgh-ahsGmGKiKV~Nh~dfqDi~svval~~Ty--at~epFiDaKYDiriQKIG~---nYKaymRtsIsgnWK 312 (488)
T KOG3895|consen 239 TYPVVVKVGH-AHSGMGKIKVENHEDFQDIASVVALTKTY--ATAEPFIDAKYDIRIQKIGH---NYKAYMRTSISGNWK 312 (488)
T ss_pred CCcEEEEecc-cccccceeeecchhhhHhHHHHHHHHhhh--hhccccccccceeehhhhhh---hHHHHhhhhhccCcc
Confidence 4999999843 44788889999999988654322 2222 67899998545666655532 221221 111111
Q ss_pred ecCeEEEEEeCCCCCHHHHH------HHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCC
Q 013661 92 KENICHIVKAPAAVPWKISE------LATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 92 ~~g~~~~~~~p~~l~~~~~~------~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
.+ ......+ +-+-+...+.+.+|.--+|.|+.+..+||+=||+|||-.
T Consensus 313 tN-----------tGSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~ 366 (488)
T KOG3895|consen 313 TN-----------TGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDS 366 (488)
T ss_pred cC-----------chHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccc
Confidence 11 1112222 233355566667777789999999999999999999973
No 124
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=93.77 E-value=0.18 Score=50.99 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=63.0
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++..........+.+.|+..|+.+.......+-+-+.+.+..+.+++.+++++|++.|++. .+...++.....
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 109 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV 109 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence 4566777654444466777888888888764333455666666677777778889999999888754 677777766778
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.+|+.
T Consensus 110 p~i~IPTt 117 (366)
T PRK09423 110 PVVIVPTI 117 (366)
T ss_pred CEEEeCCc
Confidence 99999984
No 125
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=93.64 E-value=0.2 Score=50.73 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=62.2
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCC
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAART 347 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~ 347 (438)
.++.++++..+.. .....+.+.|+..|+.+..- -...|-+.+.+.+.++.+++.+++++|++.|++. ++..+++...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4666787765544 66778888999888876421 2345777888888888888889999999888753 4444443322
Q ss_pred ------------------CCceEeccCC
Q 013661 348 ------------------PLPVIGVPVR 357 (438)
Q Consensus 348 ------------------~~pVi~~p~~ 357 (438)
..|+|.||+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 104 TNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred hCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 6899999995
No 126
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.55 E-value=0.23 Score=49.88 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=64.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++..........+.+.|+..| .+... ...+.+.+.+.+..+.+++.+.+++|++.|++ ..+.+.++-....
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi 112 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI 112 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 456678776665555667777888888 76544 45588888888888888888899999888764 5788888777788
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.+||.
T Consensus 113 p~I~IPTT 120 (350)
T PRK00843 113 PFISVPTA 120 (350)
T ss_pred CEEEeCCC
Confidence 99999995
No 127
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=93.11 E-value=0.28 Score=48.86 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=59.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC--ChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART 347 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr--~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~ 347 (438)
.++.|+++...-....+++.+.|++.|+++......... +-+.+.+..+.+++ +.+++|++.|++ -.+.++++-..
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~ 103 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKV 103 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHc
Confidence 356688776554445677888899989876542212233 44555566666666 888999888764 47888887777
Q ss_pred CCceEeccCC
Q 013661 348 PLPVIGVPVR 357 (438)
Q Consensus 348 ~~pVi~~p~~ 357 (438)
..|+|.||+.
T Consensus 104 gip~I~VPTT 113 (332)
T cd08549 104 GKPFISVPTA 113 (332)
T ss_pred CCCEEEeCCC
Confidence 8899999995
No 128
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.03 E-value=0.36 Score=48.38 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=64.0
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCC---eEEEEecccc-Ccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.++++.........++.+.|+..|+++..-+.. .+.+.+.+.+..+.+.+.++ +++|++.|++ ..+.+++
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 104 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV 104 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence 456677766555567888889999999887654443 25566777777777778787 7888888764 5788887
Q ss_pred cC--CCCCceEeccCC
Q 013661 344 AA--RTPLPVIGVPVR 357 (438)
Q Consensus 344 ~~--~~~~pVi~~p~~ 357 (438)
++ ....|+|.+||.
T Consensus 105 A~~~~rgip~i~VPTT 120 (345)
T cd08195 105 AATYMRGIDFIQIPTT 120 (345)
T ss_pred HHHHhcCCCeEEcchh
Confidence 73 556899999995
No 129
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=92.97 E-value=0.34 Score=48.43 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=64.0
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.++++.........++...|++.| .+..-+ ..+-+.+.+.+..+.+++.+.+++|++.|++ -.+...++-....
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~ 103 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI 103 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 456677766555567777888898888 765543 3466777777888888888899999888765 4777777766778
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.||+.
T Consensus 104 p~i~iPTT 111 (339)
T cd08173 104 PFISVPTA 111 (339)
T ss_pred CEEEecCc
Confidence 99999985
No 130
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.75 Score=47.49 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhh-CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013661 4 NDLESARRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64 (438)
Q Consensus 4 ~s~ee~~~~~~~i-gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~ 64 (438)
.+.+++++..++- .-=+||||.... .|.|+++++...++.. + ..++||+||+
T Consensus 291 ~d~e~lrk~w~~nasr~wIVkppasa-Rg~gIrv~~kw~q~pk------~--rpLvvQ~yie 343 (662)
T KOG2156|consen 291 ADREELRKYWEKNASRLWIVKPPASA-RGIGIRVINKWSQFPK------D--RPLVVQKYIE 343 (662)
T ss_pred ccHHHHHHHHhhCccccEEecCcccc-cCcceEeccchhhCCC------c--ccHHHHHHhh
Confidence 4567777777652 122889998765 7899999998766532 2 3378888887
No 131
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.79 E-value=0.24 Score=49.64 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=60.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~ 348 (438)
.++.|+++..+.......+.+.|+..|+.+.. .....+-+-+.+.+..+.+++.+++++|++.|++. .+...++....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~ 102 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG 102 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 45667776555555667778888888887542 22334555555666777777889999999887753 66666666667
Q ss_pred CceEeccCC
Q 013661 349 LPVIGVPVR 357 (438)
Q Consensus 349 ~pVi~~p~~ 357 (438)
.|+|.||+.
T Consensus 103 ~p~i~VPTt 111 (345)
T cd08171 103 KPVFTFPTI 111 (345)
T ss_pred CCEEEecCc
Confidence 899999984
No 132
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=92.73 E-value=0.3 Score=48.97 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=59.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-CC--CChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-AH--RTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAAR 346 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s-~h--r~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~ 346 (438)
.++.|+++.........++.+.|++.|+++...... .. .+.+...+..+.+++ +.+++|++.|++. .....++..
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~ 102 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK 102 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh
Confidence 346677654443334677888899999876443222 22 566666667666666 8899999888764 777777777
Q ss_pred CCCceEeccCC
Q 013661 347 TPLPVIGVPVR 357 (438)
Q Consensus 347 ~~~pVi~~p~~ 357 (438)
...|+|.+|+.
T Consensus 103 ~~~p~i~IPTT 113 (348)
T cd08175 103 TGIPYISVPTA 113 (348)
T ss_pred cCCCEEEecCc
Confidence 78899999985
No 133
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=92.61 E-value=0.56 Score=48.36 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEE--eCCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAV--AKSEEELSSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~--v~~~~el~~~~~~~~~~~~~~lvEe~I~g 65 (438)
|+.+++..-.=-+|+||.+ +|||+||.+ =.++++.+++++.+.+.+ +|+|||+.-
T Consensus 329 dL~~~~~a~r~~lVLKP~D-~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~--yilQe~v~~ 385 (445)
T PF14403_consen 329 DLVEFAIANRDRLVLKPND-EYGGKGVYIGWETSPEEWEAALEEAAREP--YILQEYVRP 385 (445)
T ss_pred hHHHHHHhchhcEEecccc-ccCCCCeEECCcCCHHHHHHHHHHHhcCC--cEEEEEecC
Confidence 5555544444568999965 579999987 457899999999877767 999999984
No 134
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=92.27 E-value=0.11 Score=49.47 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=80.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE-ecCCCChHHHHHhHhhhhhcCCeEEEEec-cccCcccccccCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v-~s~hr~~~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~~~~~ 348 (438)
+++.++++..+.....+++.+.|+..|+++..-. ...+-+-+...+....++..++++++++. |....+.-.++....
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~ 99 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG 99 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 4677888777666677888889999999976321 11223444455566666666788888665 457788999999999
Q ss_pred CceEeccCCCCCCCChhhHHHhh--------hC-CCCCceEEEE-eC---C------cchHHHHHHHHHcCCChHHHHHH
Q 013661 349 LPVIGVPVRASALDGLDSLLSIV--------QM-PRGVPVATVA-IN---N------ATNAGLLAVRMLGFGDADLRARM 409 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~--------~~-~~g~p~~tv~-~~---~------~~~Aa~~a~~il~~~~~~~~~~l 409 (438)
+|.|.|||. .+.||+.+-.+.+ .+ |.-.|.+.+. ++ + ..+.+-+..++-++.||.+..++
T Consensus 100 ~p~isVPTa-~S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~~ 178 (250)
T PF13685_consen 100 IPFISVPTA-ASHDGFASPVASLTVDDGFKVSYGPAKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHEY 178 (250)
T ss_dssp --EEEEES---SSGGGTSSEEEEEET-TEEEEE-E----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEeccc-cccccccCCCeeEEecCCCceeecCCCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHHh
Confidence 999999994 4456664222222 12 3334444332 11 1 23445566677777788887766
Q ss_pred HHHHHHH
Q 013661 410 QQYMEDM 416 (438)
Q Consensus 410 ~~~~~~~ 416 (438)
.++..+.
T Consensus 179 ~e~~~~~ 185 (250)
T PF13685_consen 179 GEPYCEY 185 (250)
T ss_dssp TS---HH
T ss_pred hhhHHHH
Confidence 5544433
No 135
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=92.06 E-value=0.58 Score=46.84 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=59.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-C--CCChHHHHHhHhhhhhcCC---eEEEEecccc-Ccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-A--HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s-~--hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.++++..........+.+.|+..|+++...+.+ . +.+.+.+.+..+.+++.++ +++|++.|++ -.+.+.+
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 100 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 100 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence 456677766555556777888899999887543333 2 3344566667777777676 7888888765 3666676
Q ss_pred c--CCCCCceEeccCC
Q 013661 344 A--ARTPLPVIGVPVR 357 (438)
Q Consensus 344 ~--~~~~~pVi~~p~~ 357 (438)
+ -....|+|.|||.
T Consensus 101 A~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 101 AATYMRGIRFIQVPTT 116 (344)
T ss_pred HHHHccCCCEEEecCc
Confidence 6 3456899999994
No 136
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=92.00 E-value=1.5 Score=43.33 Aligned_cols=132 Identities=19% Similarity=0.297 Sum_probs=81.1
Q ss_pred EEEEEEcCC--HHHHHHH----HHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE-ecCC-
Q 013661 237 GHITIVGSS--MGLVESR----LNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAH- 308 (438)
Q Consensus 237 G~Vi~~G~~--~~eA~~k----a~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v-~s~h- 308 (438)
|.+..-|.| ..|+.+| ..+.+.+++. ...+-+++.+. ..-+ ..+..+++++++.. --..
T Consensus 16 ~r~~lkGaDg~~~e~~~ra~~~v~rfL~~l~~-------~~~~~flt~p~---~mG~---~~~~~~~~~~~v~~~~~~~~ 82 (355)
T COG3199 16 GRVLLKGADGLVAEAPKRAIVRVKRFLKKLDA-------NGDVEFLTPPG---PMGE---SLAEASGFKYRVIRFQESTP 82 (355)
T ss_pred ceeeccccCcchhhhhHHHHHHHHHHHHhccc-------cCceEEEeCCc---ccch---hHHHhhcCcceEEeecccCC
Confidence 444455555 6666666 5566666551 23344565443 2122 24467788887662 1111
Q ss_pred -CChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC-CCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCC
Q 013661 309 -RTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 309 -r~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~ 386 (438)
-|-+.|..+.+++.++|+++++ .+|+....-++..+ ....||+|+|.......| |.-+ +
T Consensus 83 ~tTa~DT~~~~r~~~~~gVdlIv-faGGDGTarDVa~av~~~vPvLGipaGvk~~Sg---------------vfA~---~ 143 (355)
T COG3199 83 RTTAEDTINAVRRMVERGVDLIV-FAGGDGTARDVAEAVGADVPVLGIPAGVKNYSG---------------VFAL---S 143 (355)
T ss_pred CccHHHHHHHHHHHHhcCceEEE-EeCCCccHHHHHhhccCCCceEeeccccceecc---------------cccc---C
Confidence 3456688889999898998665 45666666666655 789999999997554333 2211 3
Q ss_pred cchHHHHHHHHHcC
Q 013661 387 ATNAGLLAVRMLGF 400 (438)
Q Consensus 387 ~~~Aa~~a~~il~~ 400 (438)
+..||.++.+.+.-
T Consensus 144 P~~aa~l~~~~lkg 157 (355)
T COG3199 144 PEDAARLLGAFLKG 157 (355)
T ss_pred hHHHHHHHHHHhcc
Confidence 67788888887665
No 137
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=91.67 E-value=0.32 Score=48.52 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=58.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++..........+.+.|++.++.+.-.+ ..|-+.+.+.+..+.+++.+++++|++.|++. .+..+++.....
T Consensus 24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~ 102 (337)
T cd08177 24 SRALVLTTPSLATKLAERVASALGDRVAGTFDGA-VMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGL 102 (337)
T ss_pred CeEEEEcChHHHHHHHHHHHHHhccCCcEEeCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcC
Confidence 3566777654433456667777777654433222 23666666677777777789999999888764 666666666678
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.|||.
T Consensus 103 p~i~IPTt 110 (337)
T cd08177 103 PIIAIPTT 110 (337)
T ss_pred CEEEEcCC
Confidence 99999995
No 138
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=91.61 E-value=0.74 Score=46.38 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=61.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCC---eEEEEecccc-Ccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.++++.........++.+.|+..|+.+...+.+ .+.+-+.+.+..+.+++.++ +++|++.|++ -.+.+++
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 111 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA 111 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence 456677776555567777888899999987643322 24455666677777777776 7889888764 4777777
Q ss_pred c--CCCCCceEeccCC
Q 013661 344 A--ARTPLPVIGVPVR 357 (438)
Q Consensus 344 ~--~~~~~pVi~~p~~ 357 (438)
+ -....|+|.|||.
T Consensus 112 A~~~~~gip~i~IPTT 127 (358)
T PRK00002 112 AATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHhcCCCCEEEcCch
Confidence 6 3556899999995
No 139
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=91.46 E-value=0.8 Score=46.12 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=61.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCCe---EEEEecccc-Ccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~~---v~i~~ag~~-~~l~~~i 343 (438)
.++.++++..........+.+.|+..|+++...+.+ .+.+.+.+.+..+.+.+.+++ ++|++.|++ ..+.+++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~ 103 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL 103 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 456677665444446677889999999987655433 345556677777777888898 899888764 5777777
Q ss_pred cCC--CCCceEeccCC
Q 013661 344 AAR--TPLPVIGVPVR 357 (438)
Q Consensus 344 ~~~--~~~pVi~~p~~ 357 (438)
+.. ...|+|.+||.
T Consensus 104 A~~~~rgip~I~IPTT 119 (355)
T cd08197 104 AALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHhccCCCEEEecCc
Confidence 642 46899999994
No 140
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=91.34 E-value=0.47 Score=48.10 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=56.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC----
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA---- 345 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~---- 345 (438)
+++.|+++..+ . ...++...|+..|+++..-.....-+.+.+.+.++.+++.+++++|++.|++. .....++.
T Consensus 23 ~r~livtd~~~-~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~ 100 (374)
T cd08183 23 RRVLLVTGASS-L-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN 100 (374)
T ss_pred CcEEEEECCch-H-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence 45667775543 2 77888888999998865432233444456667777778889999999988763 22222221
Q ss_pred ------------------CCCCceEeccCC
Q 013661 346 ------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ------------------~~~~pVi~~p~~ 357 (438)
....|+|.||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred CCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 135899999985
No 141
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=91.28 E-value=0.62 Score=47.22 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=58.8
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC--
Q 013661 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 345 (438)
.++.|+++..- +....+++...|++.|+.+.. .-...+-+.+.+.+..+.+++.+++++|++.|++. .....++.
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~ 106 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA 106 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 45656665432 334678888889998987642 11234666677777888888889999999988764 33333332
Q ss_pred ----------------CCCCceEeccCC
Q 013661 346 ----------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ----------------~~~~pVi~~p~~ 357 (438)
....|+|.||+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 107 GSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred HCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 235799999995
No 142
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=90.89 E-value=0.61 Score=47.32 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=59.4
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-ccccccc---
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..... .....+.+.|++.|+.+..- -...+-+.+.+.+..+.+++.+++++|++.|++. ...-+++
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~ 103 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLA 103 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 3566777654432 36788889999999876432 2334666666777787888889999999988763 3333333
Q ss_pred ---------------CCCCCceEeccCC
Q 013661 345 ---------------ARTPLPVIGVPVR 357 (438)
Q Consensus 345 ---------------~~~~~pVi~~p~~ 357 (438)
.....|+|.||+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 104 TNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred hCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 2345799999984
No 143
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=90.82 E-value=0.98 Score=45.46 Aligned_cols=87 Identities=21% Similarity=0.343 Sum_probs=62.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCC----eEEEEeccc-cCccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI----EIIIAGAGG-AAHLPGM 342 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~----~v~i~~ag~-~~~l~~~ 342 (438)
.++.+|+...........+.+.|+..|+++..-+.. .+.+.+.+.+..+.+.+.++ +++|++.|+ .-.+.++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~ 106 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL 106 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence 455677655444445667788888889987643333 35677777777777777787 899988875 4588888
Q ss_pred cc--CCCCCceEeccCC
Q 013661 343 VA--ARTPLPVIGVPVR 357 (438)
Q Consensus 343 i~--~~~~~pVi~~p~~ 357 (438)
++ -....|.|.|||.
T Consensus 107 ~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 107 AASLYRRGTPYVRIPTT 123 (354)
T ss_pred HHHHhcCCCCEEEEcCc
Confidence 87 4667899999994
No 144
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=90.69 E-value=1.2 Score=44.35 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=59.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCC-
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART- 347 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~- 347 (438)
.++.++++..........+...|++. +.+..- ....+-+-+.+.+..+.+++.+.+++|++.|++ -.+...++...
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~ 102 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN 102 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc
Confidence 35667776554446777788888876 554322 123355666677777777888899999888765 36666766655
Q ss_pred -CCceEeccCC
Q 013661 348 -PLPVIGVPVR 357 (438)
Q Consensus 348 -~~pVi~~p~~ 357 (438)
..|+|.+|+.
T Consensus 103 ~~~p~i~iPTt 113 (332)
T cd07766 103 RGLPIIIVPTT 113 (332)
T ss_pred CCCCEEEEeCC
Confidence 7899999985
No 145
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=2.4 Score=44.31 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----CCCCcEEEeeccCC
Q 013661 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----GFDRGLYVEKWAPF 65 (438)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----~~~~~~lvEe~I~g 65 (438)
....++||..-. -|+|++++++.+++........ .....++++.||+.
T Consensus 199 ~~~wIvKP~~~s-rg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASKS-RGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEecccccc-ccceeEEecchhhhhhhhhcccccccccccccceeeeeccC
Confidence 357999997654 7999999999999887764321 11245888999883
No 146
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=89.65 E-value=5.4 Score=36.31 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccC--CCHHHHHHHHHHHHHcCCcEEEEEec-CCCChHHHHHhHh
Q 013661 243 GSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYAS 319 (438)
Q Consensus 243 G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~--sD~~~~~~~~~~l~~~G~~~~~~v~s-~hr~~~~~~~~~~ 319 (438)
+.++..|+..+..++...+. ..+..+++++.||+ .|...+.++++.|++.|+.+++--.+ .+.+++++..|.+
T Consensus 84 ~~~l~~AL~~A~~~L~~~~~----~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~ 159 (187)
T cd01452 84 KANFITGIQIAQLALKHRQN----KNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFID 159 (187)
T ss_pred cchHHHHHHHHHHHHhcCCC----cCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHH
Confidence 35688999999988875432 11234666776665 46677888999999999998755444 6777888888886
Q ss_pred hhh
Q 013661 320 SAH 322 (438)
Q Consensus 320 ~~~ 322 (438)
...
T Consensus 160 ~~~ 162 (187)
T cd01452 160 AVN 162 (187)
T ss_pred Hhc
Confidence 653
No 147
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=89.24 E-value=1.1 Score=45.29 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=45.9
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++... +....+++.+.|++.|+++..- -...|-+-+.+.+.++.+++.+++++|++.|++.
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 35656665433 2236788889999989876432 1234666666777777788889999999988763
No 148
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=88.55 E-value=0.88 Score=45.57 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=66.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
+++.+++|..+..-..+.+.+.|+..|+...+- ..-+=+-+++.+..+.+.+.+.+++|++.|+. -...-+++-...+
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGLVVHVV-FVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCcceeee-ecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 455688887777777778888999999843333 33466666677777666556789999887664 4677778888999
Q ss_pred ceEeccCCCCCCCChh
Q 013661 350 PVIGVPVRASALDGLD 365 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~ 365 (438)
|+|.+||. .+.||..
T Consensus 110 pfIsvPT~-AS~Da~~ 124 (360)
T COG0371 110 PFISVPTI-ASTDAIT 124 (360)
T ss_pred CEEEecCc-ccccccc
Confidence 99999995 3344443
No 149
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=88.34 E-value=0.61 Score=47.09 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=58.6
Q ss_pred CeEEEEEccCCCHH-HHHHHHHHHHHcCCcEEEEE-ecCCCChHHHHHhHhhhhhcCCeEEEEeccccC----ccccccc
Q 013661 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVA 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~~-~~~~~~~~l~~~G~~~~~~v-~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~ 344 (438)
+++.||++...... ....+.+.|++.|+++..-. ...|=+.+.+.+..+.+++.+++++|++.|++. -...+..
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~ 101 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLL 101 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhc
Confidence 47778877622222 57788888999999874332 456777777888888888889999999987763 1222222
Q ss_pred C----------------CCCCceEeccCC
Q 013661 345 A----------------RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~----------------~~~~pVi~~p~~ 357 (438)
. ...+|+|.+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (366)
T PF00465_consen 102 ANPGDLRDLLGKGPPPTKPALPLIAIPTT 130 (366)
T ss_dssp TSSSCGGGGGCECSCCSS--SEEEEEESS
T ss_pred cCCCcHHHHHhhccccccCCCcEEEeeCC
Confidence 2 123899999995
No 150
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=88.34 E-value=1.1 Score=45.27 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC---
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA--- 345 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~--- 345 (438)
.++.|+++..+- ....+.+.|+..|+.+..- -...+-+-+.+.+..+.+++.+++++|++.|++. ++..+++.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~ 101 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLG 101 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence 356677655432 5566778888888765322 1234555566777777788889999999888753 33333322
Q ss_pred -------------------CCCCceEeccCC
Q 013661 346 -------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 -------------------~~~~pVi~~p~~ 357 (438)
....|+|.||+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 102 APREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred CCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 235799999995
No 151
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=87.99 E-value=1 Score=46.12 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=45.3
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++... +......+.+.|++.|+.+..- -...+-+-+.+.+..+.+++.+++++|++.|++.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 45667765332 2236777888999999876422 1234555566777777778889999999988763
No 152
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=87.71 E-value=1.1 Score=45.72 Aligned_cols=86 Identities=26% Similarity=0.329 Sum_probs=54.3
Q ss_pred CeEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEEEec--CCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCC
Q 013661 271 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVRIVS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAAR 346 (438)
Q Consensus 271 ~~v~ii~gs~sD-~~~~~~~~~~l~~~G~~~~~~v~s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~ 346 (438)
.++.|+++.... .....++.+.|++.|+++..- -. .+-+.+.+.+..+.+++.+++++|++.|++. .....++..
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f-~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 101 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVF-DGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLL 101 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEE-CCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 456677765443 267778888999999876432 11 1223344555566667788999999988763 333333211
Q ss_pred ------------------CCCceEeccCC
Q 013661 347 ------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 ------------------~~~pVi~~p~~ 357 (438)
...|+|.||+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 102 LAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 25799999985
No 153
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=87.59 E-value=2.3 Score=43.16 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=56.3
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-ccccccc---
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..... ....++.+.|+..|+++..- -+..|-+-+.+.+..+.+++.+++++|++.|++. ...-.++
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~ 108 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVA 108 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 3555666544333 46778888999889875432 1223566666777777778889999999988764 1111111
Q ss_pred ---------------CCCCCceEeccCC
Q 013661 345 ---------------ARTPLPVIGVPVR 357 (438)
Q Consensus 345 ---------------~~~~~pVi~~p~~ 357 (438)
-....|+|.||+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 109 TNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred hCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 1346899999994
No 154
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=87.55 E-value=1.3 Score=44.94 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=47.5
Q ss_pred CeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~s--D~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++..+ ......++.+.|+..|+++..- -+..+=+-+.+.+..+.+++.+++++|++.|++.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 46678887654 4467788889999999876421 1233555566677777778889999999988763
No 155
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=87.48 E-value=1.3 Score=45.03 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=55.9
Q ss_pred CeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC-
Q 013661 271 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~ii~gs~sD--~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
+++.|+++..+- ......+.+.|+..|+.+..- -..+|-+.+.+.+.++.+++.+++++|++.|++. .+.-.++.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 108 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG 108 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence 456677664332 234677888899988875321 1233555566667777778889999999988764 23323222
Q ss_pred -----------------CCCCceEeccCC
Q 013661 346 -----------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 -----------------~~~~pVi~~p~~ 357 (438)
....|+|.||+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 109 APYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred hhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 245799999984
No 156
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=87.29 E-value=1.7 Score=43.77 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=56.7
Q ss_pred CeEEEEEccCC-C-HHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-ccccccc--
Q 013661 271 PRIGIIMGSDS-D-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA-- 344 (438)
Q Consensus 271 ~~v~ii~gs~s-D-~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~-- 344 (438)
.++.|+++..+ . .....++.+.|+..|+++..- -+..+-+-+.+.+..+.+++.+++++|++.|++. .....++
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~ 105 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL 105 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 45667766543 2 224577888899989875432 1234556666677777788889999999998764 2232222
Q ss_pred ---------------CCCCCceEeccCC
Q 013661 345 ---------------ARTPLPVIGVPVR 357 (438)
Q Consensus 345 ---------------~~~~~pVi~~p~~ 357 (438)
.....|+|.||+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 106 IKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 1235799999995
No 157
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=87.24 E-value=1.7 Score=43.96 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=55.1
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-ccccccc---
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..... ..+.++.+.|+..|+.+..- -.-.|-+-+.+.+..+.+++.+++++|++.|++. .....++
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~ 106 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA 106 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 4566776654322 24677888898888875421 1223555566667777778889999999988763 2222221
Q ss_pred CC----------------CCCceEeccCC
Q 013661 345 AR----------------TPLPVIGVPVR 357 (438)
Q Consensus 345 ~~----------------~~~pVi~~p~~ 357 (438)
.+ ...|+|.||+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 135 (374)
T cd08189 107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTT 135 (374)
T ss_pred hCCCCCHHHHhCccccCCCCCCEEEEECC
Confidence 11 12699999985
No 158
>PLN02834 3-dehydroquinate synthase
Probab=87.03 E-value=2.3 Score=44.05 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=60.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE--EEec---CCCChHHHHHhHhhhhhcCCe---EEEEeccc-cCcccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV--RIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGG-AAHLPG 341 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~--~v~s---~hr~~~~~~~~~~~~~~~g~~---v~i~~ag~-~~~l~~ 341 (438)
.++.+|+...........+.+.|+..|+++.+ .+.. .+.+.+.+.+..+.+.+.+++ ++|++.|+ ...+.+
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak 180 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG 180 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence 45667775544445677788888888987554 2322 345666666776777777877 99988876 457777
Q ss_pred cccC--CCCCceEeccCC
Q 013661 342 MVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 342 ~i~~--~~~~pVi~~p~~ 357 (438)
+++. ....|+|.||+.
T Consensus 181 ~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 181 FAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 7653 446899999995
No 159
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=86.70 E-value=1 Score=45.14 Aligned_cols=85 Identities=25% Similarity=0.217 Sum_probs=54.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++...-......+.+.|+..++.+ .+.+---+-+.+.+..+.+++.+++++|++.|++. .+...++.....
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~--~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~ 101 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFV--LRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGV 101 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEE--EEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCC
Confidence 345577654433334444455554455543 22221155566667777778889999999887754 777777777788
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.||+.
T Consensus 102 p~i~VPTT 109 (347)
T cd08172 102 PVITVPTL 109 (347)
T ss_pred CEEEecCc
Confidence 99999995
No 160
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=86.53 E-value=1.8 Score=43.98 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=56.1
Q ss_pred CeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEEE-ecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC-
Q 013661 271 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~ii~gs~sD--~~~~~~~~~~l~~~G~~~~~~v-~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
+++.|+++..+- .....++...|++.|+++..-. ...+-+.+.+.+..+.+++.+++++|++.|++. .....++.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 456677654332 2335788888999998754321 224456676777777788889999999888763 22222221
Q ss_pred ------------------CCCCceEeccCC
Q 013661 346 ------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ------------------~~~~pVi~~p~~ 357 (438)
....|+|.||+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 107 LEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 135799999984
No 161
>PRK10586 putative oxidoreductase; Provisional
Probab=85.90 E-value=3.4 Score=41.75 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeE
Q 013661 249 VESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 249 A~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v 328 (438)
++.++-..+..+. ..++.+++|..+-......+...|++.|+.+. +.+-+-+.+...+..+..+ .++++
T Consensus 21 a~~~l~~~~~~~g--------~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~--~~~g~~~~~~v~~l~~~~~-~~~d~ 89 (362)
T PRK10586 21 SIDHLHDFFTDEQ--------LSRAVWIYGERAIAAAQPYLPPAFELPGAKHI--LFRGHCSESDVAQLAAASG-DDRQV 89 (362)
T ss_pred HHHHHHHHHHhcC--------CCeEEEEEChHHHHHHHHHHHHHHHHcCCeEE--EeCCCCCHHHHHHHHHHhc-cCCCE
Confidence 5555555554432 13566787765544444556677888887652 2333444555555554443 47899
Q ss_pred EEEeccccC-cccccccCCCCCceEeccCC
Q 013661 329 IIAGAGGAA-HLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 329 ~i~~ag~~~-~l~~~i~~~~~~pVi~~p~~ 357 (438)
+|++.|++. +..-.++.....|+|.||+.
T Consensus 90 iiavGGGs~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 90 VIGVGGGALLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred EEEecCcHHHHHHHHHHhhcCCCEEEEeCC
Confidence 998887654 55556666678899999984
No 162
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=84.86 E-value=2.4 Score=42.13 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=50.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec--CCCChHHHHHhHhhhhhcCCeEEEEeccc-cCcccccccCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS--AHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAART 347 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~ 347 (438)
.++.|+++... ...+.+.|+..++ .+..+.. ..-+.+++.+.+...+ +.+++|++.|+ .-.+.++++...
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~--~~d~iIaiGGGsv~D~aK~vA~~~ 98 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIP--NVDAVVGIGGGKVIDVAKYAAFLR 98 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHhhc
Confidence 45667764432 6677788887776 2222222 1233334444443222 47899988876 458888888888
Q ss_pred CCceEeccCC
Q 013661 348 PLPVIGVPVR 357 (438)
Q Consensus 348 ~~pVi~~p~~ 357 (438)
..|+|.+||.
T Consensus 99 ~~p~i~vPTt 108 (331)
T cd08174 99 GIPLSVPTTN 108 (331)
T ss_pred CCCEEEecCc
Confidence 9999999994
No 163
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=84.45 E-value=3.4 Score=41.40 Aligned_cols=85 Identities=22% Similarity=0.227 Sum_probs=56.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEec---CCCChHHHHHhHhhhhhcC---CeEEEEecccc-Cccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGM 342 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~-~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~ 342 (438)
.++.+++.........+.+.+.|+. .++.+. +.+ .+.+.+.+.+..+.+.+.| .+++|++.|++ ..+.++
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~~--~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~ 101 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVHIL--VIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF 101 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCceEE--EeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence 4566776554444667777888877 565543 333 3456666666666666555 67888888764 477777
Q ss_pred ccC--CCCCceEeccCC
Q 013661 343 VAA--RTPLPVIGVPVR 357 (438)
Q Consensus 343 i~~--~~~~pVi~~p~~ 357 (438)
++. ....|+|.+|+.
T Consensus 102 vA~~~~rgip~i~VPTT 118 (344)
T cd08169 102 VASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHHHhccCCcEEEecCC
Confidence 765 346899999984
No 164
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=84.42 E-value=1.8 Score=39.27 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=38.6
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 274 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 274 ~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++++.++ ++.+.++++.|.++||++.+| -+ |++|+ ++.|++|..+..
T Consensus 3 vLISVsD--K~~l~~lAk~L~~lGf~I~AT----~G----TAk~L---~e~GI~v~~V~k 49 (187)
T cd01421 3 ALISVSD--KTGLVEFAKELVELGVEILST----GG----TAKFL---KEAGIPVTDVSD 49 (187)
T ss_pred EEEEEeC--cccHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHcCCeEEEhhh
Confidence 4676664 899999999999999999888 56 89998 667999876643
No 165
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=83.92 E-value=4.1 Score=41.32 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=45.1
Q ss_pred CeEEEEEccCCCHH-HHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~sD~~-~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++....+. ....+.+.|+..|+++..- -...+-+-+.+.+..+.+++.+++++|++.|++.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 35667765433222 5677888899989876432 1223555576777777778889999999988763
No 166
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=83.77 E-value=4.6 Score=41.05 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=43.9
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++... +.....++.+.|++.|+.+..- -...+-+-+.+.+..+.+++.+++++|++.|++.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 35666665432 2236777888999999876432 0123444466666777778889999999988763
No 167
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=83.76 E-value=3.1 Score=42.13 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=45.8
Q ss_pred CeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~sD--~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++..+- .....++.+.|+..|+++..- -...+-+.+.+.+..+.+++.+++++|++.|++.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 345677654332 245677888899889876421 1223666676777777788889999999988763
No 168
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=82.48 E-value=6.8 Score=40.31 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=45.8
Q ss_pred CeEEEEEccCCC-HHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~sD-~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++.... ...+.++.+.|++.|+++..- -+..+-+-+.+.+.++.+++.+++++|++.|++.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 456677654322 224688888899989886532 1234556666777777788889999999988763
No 169
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=82.11 E-value=7.3 Score=41.58 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=54.1
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC---CChHHHHHhHhhhhhc---CCeEEEEeccc-cCcccccccC
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH---RTPDLMFSYASSAHER---GIEIIIAGAGG-AAHLPGMVAA 345 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~h---r~~~~~~~~~~~~~~~---g~~v~i~~ag~-~~~l~~~i~~ 345 (438)
+.+++.... ......+.+.|+..|+.+...+.... ++.+...+..+.+.+. ..+++|++.|+ ...+++++|+
T Consensus 212 ~~iV~d~~v-~~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~ 290 (542)
T PRK14021 212 VALIHTQPV-QRHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAA 290 (542)
T ss_pred EEEEECccH-HHHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHH
Confidence 445543322 34567778888999988655543321 2344444444444444 37789988875 5588898885
Q ss_pred --CCCCceEeccCC
Q 013661 346 --RTPLPVIGVPVR 357 (438)
Q Consensus 346 --~~~~pVi~~p~~ 357 (438)
..-.|+|.|||.
T Consensus 291 ~y~rGi~~i~vPTT 304 (542)
T PRK14021 291 TWMRGIRYVNCPTS 304 (542)
T ss_pred HHHcCCCEEEeCCh
Confidence 578999999994
No 170
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=82.04 E-value=6.7 Score=39.75 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=43.2
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEEE-ecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~~v-~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++..... .....+.+.|+..|+.+..-- ...+-+.+.+.+.++.+++.+++++|++.|++.
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4566776643322 256778888998888764220 112334455666676777889999999988763
No 171
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=80.90 E-value=5.7 Score=40.38 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=55.0
Q ss_pred CeEEEEEccC-CCHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-ccccccc---
Q 013661 271 PRIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~ii~gs~-sD~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++.. .....+.++.+.|++.|+.+..- -+..+=+-+.+.+..+.+++.+++++|++.|++. ...-.++
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~ 111 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA 111 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4565666542 23456778889999999874221 1122445566677777778889999999988763 1111111
Q ss_pred ---------------CCCCCceEeccCC
Q 013661 345 ---------------ARTPLPVIGVPVR 357 (438)
Q Consensus 345 ---------------~~~~~pVi~~p~~ 357 (438)
.....|+|.+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 112 ANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred HCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 1245799999984
No 172
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=77.65 E-value=5.2 Score=40.90 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 284 PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
..+.++.+.|++.|+.+..- -...+=+.+.+.+.++.+++.+++++|++.|++.
T Consensus 64 g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 64 GMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 45688889999999876432 1122333366677777778889999999998874
No 173
>PRK10481 hypothetical protein; Provisional
Probab=77.62 E-value=8.1 Score=36.18 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=52.2
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-CCChHHHHHhHhhhhhcCCeEE-EEeccccCcccccccCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEII-IAGAGGAAHLPGMVAART 347 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~-hr~~~~~~~~~~~~~~~g~~v~-i~~ag~~~~l~~~i~~~~ 347 (438)
..++++++-. .+......+....+|++......|. +.+++.+.+..+++...|++++ ..|+|.+-.....+...+
T Consensus 129 g~riGVitP~---~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~l 205 (224)
T PRK10481 129 GHQVGVIVPV---EEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKAL 205 (224)
T ss_pred CCeEEEEEeC---HHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHH
Confidence 3567777633 3555555566667799987776664 4666677777777778899955 477776644455555555
Q ss_pred CCceE
Q 013661 348 PLPVI 352 (438)
Q Consensus 348 ~~pVi 352 (438)
.+|||
T Consensus 206 g~PVI 210 (224)
T PRK10481 206 DVPVL 210 (224)
T ss_pred CcCEE
Confidence 55555
No 174
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=77.16 E-value=17 Score=29.02 Aligned_cols=30 Identities=3% Similarity=0.096 Sum_probs=27.2
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 233 ~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+.|+-.|++.|+|++||.+++++.++.++.
T Consensus 50 GGRvl~v~~~g~tl~eA~~~ay~~i~~I~~ 79 (93)
T PF02843_consen 50 GGRVLTVVALGDTLEEAREKAYEAIEKIDF 79 (93)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHTTSB-
T ss_pred CCeEEEEEEEcCCHHHHHHHHHHHHhccCC
Confidence 788889999999999999999999998864
No 175
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=75.58 E-value=39 Score=36.06 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=76.7
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH-hhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
.+.+..++ .| ....-+.+...+++...+++++ .+..+...+.+ +.++.+|++|+|.-.| -+.+|...+.
T Consensus 14 ~p~~~~~~--~~--~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~dviIsrG~----ta~~i~~~~~ 83 (538)
T PRK15424 14 KPVIWTVS--VS--RLFELFRDISLEFDHLANITPI--QLGFEKAVTYIRKRLATERCDAIIAAGS----NGAYLKSRLS 83 (538)
T ss_pred CCeEEEee--HH--HHHHHHHHHHHhcCCCceEEeh--hhhHHHHHHHHHHHHhhCCCcEEEECch----HHHHHHhhCC
Confidence 45554443 33 2333444555677776665543 56667777777 4466778999997543 3456677889
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~--------~~~~~~~l~~~~~ 414 (438)
.|||-+++++ +|=+.+|...-..+.- ++.|+-.+-...+..-.++|++. ..+++..+++.+.
T Consensus 84 iPVv~i~~s~--~Dil~al~~a~~~~~~--iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 84 VPVILIKPSG--FDVMQALARARKLTSS--IGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred CCEEEecCCH--hHHHHHHHHHHhcCCc--EEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 9999999863 3333333322233333 56666556666666666666654 3345555555544
No 176
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=75.47 E-value=5.5 Score=39.77 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCe-EEEEeccccCcccccccCCCCCceEeccC
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~-v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
--+.+...+...+..| +...++|+|+.++....+.++++..|++ ++++.+|+++.|.-|+.+++ .||=.+++
T Consensus 248 ~t~~msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v 320 (373)
T KOG2835|consen 248 TTPVMSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAV 320 (373)
T ss_pred CchhHhhhhhhcccCc--eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-cccccccc
Confidence 3355555565666677 5667779999999999999999888999 67899999999999999987 45544444
No 177
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=75.31 E-value=48 Score=32.90 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhcCCCCc------cccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDC------QFKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~------~~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.+|..+|..++++++.+.+ -..++.+.++++.-+.++ .+.+..+.+.+.+.|+.+... ..+.+|++..+
T Consensus 28 s~eTr~kV~~a~~elgY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~--~~~~~~~~e~~ 105 (333)
T COG1609 28 SEETREKVLAAIKELGYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLA--NTDDDPEKERE 105 (333)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHH
Confidence 4567777777777776632 001123567777654444 345556667778888876655 44558888888
Q ss_pred hHhhhhhcCCeEEE-EeccccCcccccccCCCCCceEec
Q 013661 317 YASSAHERGIEIII-AGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 317 ~~~~~~~~g~~v~i-~~ag~~~~l~~~i~~~~~~pVi~~ 354 (438)
+++.+..++++=+| ........+...+... ..|++-+
T Consensus 106 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i 143 (333)
T COG1609 106 YLETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVI 143 (333)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEE
Confidence 88888888898444 4423333344444332 5676665
No 178
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=74.88 E-value=23 Score=35.93 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=56.7
Q ss_pred CeEEEEEccC-CCHHHHHHHHHHHHHcCCcEEEEE-ecCCCChHHHHHhHhhhhhcCCeEEEEeccccC----ccccccc
Q 013661 271 PRIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVA 344 (438)
Q Consensus 271 ~~v~ii~gs~-sD~~~~~~~~~~l~~~G~~~~~~v-~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~ 344 (438)
+++.|++... .....+.++.+.|+..|+++.+.- ...+=+-+.+.+-.+.+++.+.+++|+..|+|. .+..++.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence 4555666543 456789999999999997754321 122444444555667778889999999998874 2222222
Q ss_pred CCC---------------CCceEeccCC
Q 013661 345 ART---------------PLPVIGVPVR 357 (438)
Q Consensus 345 ~~~---------------~~pVi~~p~~ 357 (438)
.+. ..|+|.+|+.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 110 ENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred hCCchhhhhcccccccCCCCCEEEecCC
Confidence 221 2799999995
No 179
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=74.85 E-value=6 Score=39.33 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=51.6
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccc---c
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMV---A 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i---~ 344 (438)
.++.++++..... .....+.+.|+.. +.+.. .-...+-+.+.+.+.++.+++.+++++|++.|++. .....+ .
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~ 101 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFA 101 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHH
Confidence 3555676543222 2455666777665 54321 11234556666667777778889999999988764 233222 1
Q ss_pred C----CCCCceEeccCC
Q 013661 345 A----RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~----~~~~pVi~~p~~ 357 (438)
. ....|+|.+|+.
T Consensus 102 ~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 102 KKLGKKKKPLFIAIPTT 118 (332)
T ss_pred hCCCCCCCCCEEEeCCC
Confidence 1 234799999984
No 180
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=72.12 E-value=10 Score=42.96 Aligned_cols=67 Identities=21% Similarity=0.065 Sum_probs=43.5
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHH--HcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILT--MFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~--~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++..... .....+.+.|+ ..|+.+..- -...+-+.+.+.+....+++.+++++|++.|++.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4566777543322 36677888888 566654321 1123555577777887788889999999988753
No 181
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=71.15 E-value=9.3 Score=40.11 Aligned_cols=47 Identities=21% Similarity=0.124 Sum_probs=38.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 274 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 274 ~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++||.++ +..+.++++.|.++||++.+| -+ |.+|+ ++.|++|..+..
T Consensus 7 aLISVsD--K~~iv~lAk~L~~lGfeI~AT----~G----Tak~L---~e~GI~v~~V~k 53 (513)
T PRK00881 7 ALISVSD--KTGIVEFAKALVELGVEILST----GG----TAKLL---AEAGIPVTEVSD 53 (513)
T ss_pred EEEEEeC--cccHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHCCCeeEEeec
Confidence 4776665 899999999999999999888 56 88898 677999886644
No 182
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=70.83 E-value=4.9 Score=39.16 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCeEEEEEccCCCHHHH-----HHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec----cccCccc
Q 013661 270 LPRIGIIMGSDSDLPVM-----KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAHLP 340 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~-----~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a----g~~~~l~ 340 (438)
+.+|++++|++|+.... ..+.+.|+++|++++.-.. .. ...+.+ +..++++++... |....++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~--~~---~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~ 75 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDP--GE---DIAAQL---KELGFDRVFNALHGRGGEDGTIQ 75 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEec--Cc---chHHHh---ccCCCCEEEEecCCCCCCccHHH
Confidence 45789999987755444 7889999999999765421 21 133333 344677554332 3444566
Q ss_pred ccccCCCCCceEecc
Q 013661 341 GMVAARTPLPVIGVP 355 (438)
Q Consensus 341 ~~i~~~~~~pVi~~p 355 (438)
+++.. ...|++|.+
T Consensus 76 ~~le~-~gi~~~g~~ 89 (304)
T PRK01372 76 GLLEL-LGIPYTGSG 89 (304)
T ss_pred HHHHH-cCCCccCCC
Confidence 66532 356666654
No 183
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=70.59 E-value=14 Score=37.71 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=53.2
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEE--EEE---e---cCCCChHHHHHhHhhhhhcCCe---EEEEecccc
Q 013661 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE--VRI---V---SAHRTPDLMFSYASSAHERGIE---IIIAGAGGA 336 (438)
Q Consensus 271 ~~v~ii~gs~sD~---~~~~~~~~~l~~~G~~~~--~~v---~---s~hr~~~~~~~~~~~~~~~g~~---v~i~~ag~~ 336 (438)
.++.+|+...-.. .....+.+.|+..|+++. ..+ . ..+-+++.+.+..+.+.+.+++ ++|++.|++
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 4566776332221 234667777777787642 222 1 1233335566666666777776 999888765
Q ss_pred -CcccccccC--CCCCceEeccCC
Q 013661 337 -AHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 337 -~~l~~~i~~--~~~~pVi~~p~~ 357 (438)
-.+.+.++. +...|.|.+||.
T Consensus 123 v~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 123 VLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCC
Confidence 477777764 335799999985
No 184
>PRK05849 hypothetical protein; Provisional
Probab=68.46 E-value=1.7e+02 Score=32.73 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=77.5
Q ss_pred CHHHHHHHHHhh--CCcEEEEecCCCC-----CCcCe--EE--eC--CHHHHHHHHHHhc-C----CCCcEEEeeccCCC
Q 013661 5 DLESARRAGKQF--GYPLMVKSKRLAY-----DGRGN--AV--AK--SEEELSSAITALG-G----FDRGLYVEKWAPFV 66 (438)
Q Consensus 5 s~ee~~~~~~~i--gyPvvvKP~~~g~-----gg~Gv--~~--v~--~~~el~~~~~~~~-~----~~~~~lvEe~I~g~ 66 (438)
+.+.+.+.+... +-|++|+.+..+. +..|. .+ |. +.++|..++.... + ....++||+.|.+
T Consensus 41 ~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~- 119 (783)
T PRK05849 41 NKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGTSKDDEILVQPMLED- 119 (783)
T ss_pred CHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCCCCCCeEEEEeCccC-
Confidence 444454444432 4699999876221 22343 22 22 2347888776532 1 2245999999973
Q ss_pred eEEEEEEE-EcC-CCe---EEEEe---eeeeEEecCeE-----EEEE-eCCCCCHHHHHHHHHHHHHHHHhcCcceEEEE
Q 013661 67 KELAVIVV-RGR-DKS---ILCYP---VVETIHKENIC-----HIVK-APAAVPWKISELATDVAHKAVSSLEGAGIFAV 132 (438)
Q Consensus 67 ~e~sv~~~-~d~-~G~---~~~~~---~~e~~~~~g~~-----~~~~-~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~v 132 (438)
...+=.++ +|. +|+ +..+. ..+.+- +|.. .... .+..++++...++.+++.++=+.+|. -+..|
T Consensus 120 ~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VV-sG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDI 197 (783)
T PRK05849 120 IVLSGVAMSRDPESGAPYYVINYDESGSTDSVT-SGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFGC-DFLDI 197 (783)
T ss_pred CCceEEEEECCCCCCCCceEEEEcCCCCCccee-cccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcCC-CCeee
Confidence 22322222 221 121 11111 111111 1110 1110 12347788888999999888888764 38999
Q ss_pred EEEEeCCCcEEEEEEcC
Q 013661 133 ELFWTNNGQILLNEVAP 149 (438)
Q Consensus 133 e~~~~~~g~~~viEiNp 149 (438)
||.+|++|++|++-+=|
T Consensus 198 Efaid~~g~L~lLQ~RP 214 (783)
T PRK05849 198 EFAIDEKEELYILQVRP 214 (783)
T ss_pred EEEEccCCEEEEEEccC
Confidence 99998789999977644
No 185
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=68.01 E-value=13 Score=32.46 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH--cCCcEE-EEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 283 LPVMKDAAKILTM--FSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 283 ~~~~~~~~~~l~~--~G~~~~-~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
...+..+.+.|++ .|.+++ .+|-++.-.|-...... +..+++.+|+
T Consensus 12 ~~M~~gA~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~---~~~~~DaVIa 60 (151)
T TIGR01506 12 YDMGGAAIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLL---EEEGCEMVIT 60 (151)
T ss_pred hhHHHHHHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHH---hcCCCCEEEE
Confidence 4556777888888 666665 66666666665444444 3345777765
No 186
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=67.74 E-value=13 Score=39.01 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=38.4
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 274 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 274 ~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++|+.++ |..+.+.++.|.++||++.+| -+ |.+++ ++.|++|..+..
T Consensus 3 aLISVsD--K~~iv~lAk~L~~lGfeIiAT----gG----Tak~L---~e~GI~v~~Vsk 49 (511)
T TIGR00355 3 ALLSVSD--KTGIVEFAQGLVERGVELLST----GG----TAKLL---AEAGVPVTEVSD 49 (511)
T ss_pred EEEEEeC--cccHHHHHHHHHHCCCEEEEe----ch----HHHHH---HHCCCeEEEeec
Confidence 4666555 899999999999999999888 56 88888 667999876643
No 187
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=66.79 E-value=13 Score=36.34 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=26.2
Q ss_pred cCCeEEEEeccccCcccccccCCC----CCceEeccCCC
Q 013661 324 RGIEIIIAGAGGAAHLPGMVAART----PLPVIGVPVRA 358 (438)
Q Consensus 324 ~g~~v~i~~ag~~~~l~~~i~~~~----~~pVi~~p~~~ 358 (438)
..++-++++.|.....+|++.+.. ..+||+||++.
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~ 217 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSA 217 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecC
Confidence 346666667777777788877766 78999999974
No 188
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=66.75 E-value=7.9 Score=38.91 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=35.2
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEEE--ecCCCChHHHHHhHhhhhhcC--CeEEEEeccccC
Q 013661 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVRI--VSAHRTPDLMFSYASSAHERG--IEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~~v--~s~hr~~~~~~~~~~~~~~~g--~~v~i~~ag~~~ 337 (438)
.++.|+++... +......+...|+.. .+. .+ ...+-+.+.+.+..+.+++.+ ++++|++.|++.
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~-~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSv 92 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR--LAA-LIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSV 92 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC--cEE-EeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 45656665432 123455555555433 221 12 223555565666666666656 889999888763
No 189
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=66.58 E-value=35 Score=27.88 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccc
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
..++.+.+.++..|++++..+...+...+.+.++. ++.++++++.+..+...+...
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~~~~ 111 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSLRDR 111 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCccce
Confidence 44455566667789998777644233223444444 677899888877554444333
No 190
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=64.50 E-value=31 Score=34.63 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCC---eEEEEecccc-Cccccccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~ 344 (438)
++.+++...-.......+.+.|. ++.+. +.+ .+.+.+.+.+..+.+.+.|+ +++|++.|++ -.+.+++|
T Consensus 21 r~lIVtD~~v~~l~~~~l~~~L~--~~~~~--~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA 96 (346)
T cd08196 21 NDVFIVDANVAELYRDRLDLPLD--AAPVI--AIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVA 96 (346)
T ss_pred eEEEEECccHHHHHHHHHHHHhc--CCeEE--EeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 45566544332224444444444 44332 222 47777777777777888888 6999888765 47888876
Q ss_pred C--CCCCceEeccCC
Q 013661 345 A--RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~--~~~~pVi~~p~~ 357 (438)
+ ..-.|.|.+|+.
T Consensus 97 ~~~~rgi~~i~iPTT 111 (346)
T cd08196 97 SIYMRGVSWSFVPTT 111 (346)
T ss_pred HHHHcCCCeEEeccc
Confidence 3 345599999985
No 191
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=64.50 E-value=26 Score=35.52 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=53.5
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEE--EEE----ec-CCCC-hHHHHHhHhhhhhcCCe---EEEEecccc
Q 013661 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE--VRI----VS-AHRT-PDLMFSYASSAHERGIE---IIIAGAGGA 336 (438)
Q Consensus 271 ~~v~ii~gs~sD~---~~~~~~~~~l~~~G~~~~--~~v----~s-~hr~-~~~~~~~~~~~~~~g~~---v~i~~ag~~ 336 (438)
.++.+++...-.. .....+.+.|+..|+++. ..+ .+ .+++ ++.+.+..+.+.+.|++ ++|+..|++
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 4555665433222 223566667777785542 222 11 2233 34455666666777887 999888764
Q ss_pred -CcccccccC--CCCCceEeccCC
Q 013661 337 -AHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 337 -~~l~~~i~~--~~~~pVi~~p~~ 357 (438)
..+++++|+ +.-.|.|.+||.
T Consensus 111 v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 111 VLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 588888875 446899999986
No 192
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.39 E-value=37 Score=26.00 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=39.7
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|+..+..+...+.+++..|...|+.++.... .+.+..-.++ ++..|++..+.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~---a~~~g~~~~iiig 59 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIRE---AQLQKIPYILVVG 59 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHH---HHHcCCCEEEEEC
Confidence 3445655667788999999999999999887642 4555544444 4677999665554
No 193
>PRK13761 hypothetical protein; Provisional
Probab=61.39 E-value=41 Score=31.40 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc--------cCCCCCceEeccC
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIGVPV 356 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~~p~ 356 (438)
...++.+.-+..|.+++++. .|||.++...+.+.+++.|++.+.... -...+|++- .|....=|+=||.
T Consensus 82 ~p~eiveLa~~~~A~iEVNL--F~RT~eR~~~I~~~l~~~Ga~~vlG~~-~~~~ip~L~~~R~~v~~~GIy~ADVVLVPL 158 (248)
T PRK13761 82 VPEEIVELAEALNAKLEVNL--FYRTEERVEKIAEVLREHGAKEVLGTD-EDARIPGLDHERAKVSEDGIYSADVVLVPL 158 (248)
T ss_pred ChHHHHHHHHHhCCCEEEEe--ccCCHHHHHHHHHHHHHcCCceeeCCC-CcCcCCCCCCccceECcccceeccEEEecC
Confidence 35667777788999999885 499999999999999999998554332 245556552 2334455777887
Q ss_pred C
Q 013661 357 R 357 (438)
Q Consensus 357 ~ 357 (438)
.
T Consensus 159 E 159 (248)
T PRK13761 159 E 159 (248)
T ss_pred C
Confidence 4
No 194
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=61.18 E-value=72 Score=33.96 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCChHHHHHhH-hhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCC--ceEEEEe
Q 013661 308 HRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGV--PVATVAI 384 (438)
Q Consensus 308 hr~~~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~--p~~tv~~ 384 (438)
.++.+...+.+ +.+..+|++|+|.-.| -+.+|...+..|||.++++ |+| +|+.+....+. .++.|+-
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~----ta~~i~~~~~iPVv~i~~s-----~~D-il~al~~a~~~~~~ia~vg~ 105 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS----NGAYLKSRLSLPVIVIKPT-----GFD-VMQALARARRIASSIGVVTH 105 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch----HHHHHHHhCCCCEEEecCC-----hhh-HHHHHHHHHhcCCcEEEEec
Confidence 45556666666 3356678999997543 3456777889999999986 333 34444332221 2666665
Q ss_pred CCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013661 385 NNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 385 ~~~~~Aa~~a~~il~~~--------~~~~~~~l~~~~~ 414 (438)
.+-...+..-..+|+.. ..+++..+++.+.
T Consensus 106 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~ 143 (526)
T TIGR02329 106 QDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA 143 (526)
T ss_pred CcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 66666666666777654 2345555555444
No 195
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=60.22 E-value=9.5 Score=35.40 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=40.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcE--------EEEEecCCCChHHHHHhH-----hhhhhcCCeEEE-Eecccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPH--------EVRIVSAHRTPDLMFSYA-----SSAHERGIEIII-AGAGGA 336 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~--------~~~v~s~hr~~~~~~~~~-----~~~~~~g~~v~i-~~ag~~ 336 (438)
.++.|++.-....+ -+.+.+..+|..- +..|...|+.|++....+ +..++.|.++++ .+|||+
T Consensus 110 rrfsViTtt~rs~~---il~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms 186 (230)
T COG4126 110 RRFSVITTTERSRP---ILEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMS 186 (230)
T ss_pred ceEEEEecCcccHH---HHHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHH
Confidence 35667764433333 3344567788772 345666778666555433 345677888665 566665
Q ss_pred Cccccccc
Q 013661 337 AHLPGMVA 344 (438)
Q Consensus 337 ~~l~~~i~ 344 (438)
+|...+.
T Consensus 187 -~la~~Lq 193 (230)
T COG4126 187 -DLADQLQ 193 (230)
T ss_pred -HHHHHHH
Confidence 4444443
No 196
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=59.58 E-value=23 Score=35.56 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=37.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhc---CCeEEEEecccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHER---GIEIIIAGAGGA 336 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~---g~~v~i~~ag~~ 336 (438)
.+.++++. +-+. .++.+.|+..|+.+..- -+..+=+.+.+.+..+.+++. +++++|++.|++
T Consensus 27 ~~lvvtd~-~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS 92 (347)
T cd08184 27 PAVFFVDD-VFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGS 92 (347)
T ss_pred eEEEEECc-chhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcH
Confidence 34455532 2222 56677788888875432 122233344455666666665 899999998876
No 197
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=58.45 E-value=29 Score=27.08 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=37.6
Q ss_pred EEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 273 IGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 273 v~ii~gs~---sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
|+|+..+. ...+.+.++...|...|+.++... -+++ +.+-++.+...|++..+.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~---~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKS---LGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSST---HHHHHHHHHHTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCc---hhHHHHHHhhcCCeEEEEE
Confidence 44666565 456778899999999998888773 2443 4444556677899955544
No 198
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=58.11 E-value=38 Score=30.18 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=45.5
Q ss_pred CCChHHHHHhHhhh-hhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhCC--CCCceEEEEe
Q 013661 308 HRTPDLMFSYASSA-HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMP--RGVPVATVAI 384 (438)
Q Consensus 308 hr~~~~~~~~~~~~-~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~--~g~p~~tv~~ 384 (438)
..+.++..+..+++ ...|++|+|+-.| -..+|..++..|||.+|++ +.| +++.+... .|-.++.++-
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~----ta~~lr~~~~iPVV~I~~s-----~~D-il~al~~a~~~~~~Iavv~~ 85 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGG----TAELLRKHVSIPVVEIPIS-----GFD-ILRALAKAKKYGPKIAVVGY 85 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHH----HHHHHHCC-SS-EEEE--------HHH-HHHHHHHCCCCTSEEEEEEE
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCH----HHHHHHHhCCCCEEEECCC-----HhH-HHHHHHHHHhcCCcEEEEec
Confidence 45566677777777 7789999997653 3556777789999999986 333 34444332 2212455555
Q ss_pred CCcchHHHHHHHHHcCC
Q 013661 385 NNATNAGLLAVRMLGFG 401 (438)
Q Consensus 385 ~~~~~Aa~~a~~il~~~ 401 (438)
.+-..-.....++|+++
T Consensus 86 ~~~~~~~~~~~~ll~~~ 102 (176)
T PF06506_consen 86 PNIIPGLESIEELLGVD 102 (176)
T ss_dssp SS-SCCHHHHHHHHT-E
T ss_pred ccccHHHHHHHHHhCCc
Confidence 55554455566666653
No 199
>PLN02891 IMP cyclohydrolase
Probab=58.02 E-value=15 Score=38.64 Aligned_cols=50 Identities=14% Similarity=-0.021 Sum_probs=39.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+..+.++|| -|||.-+.+.++.|.++|+++..| -+ |++++ ++.|++|.-+
T Consensus 20 ~~~krALIS--VsDKtgi~~fAk~L~~~gveIiST----gG----Tak~L---~e~Gi~v~~V 69 (547)
T PLN02891 20 SGKKQALIS--LSDKTDLALLANGLQELGYTIVST----GG----TASAL---EAAGVSVTKV 69 (547)
T ss_pred ccccEEEEE--EecccCHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHcCCceeeH
Confidence 334566775 457899999999999999998888 67 88888 5679998754
No 200
>PRK15138 aldehyde reductase; Provisional
Probab=57.95 E-value=22 Score=36.15 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=38.0
Q ss_pred CeEEEEEccCCC--HHHHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEecccc
Q 013661 271 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 271 ~~v~ii~gs~sD--~~~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
.++.|+++..+- .....++.+.|+ |+.+..- -...+=+.+.+.+..+.+++.+++++|++.|++
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 96 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGS 96 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChH
Confidence 345567654331 233456666664 5543221 112345556677777777888999999988866
No 201
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=55.52 E-value=1.1e+02 Score=29.50 Aligned_cols=107 Identities=6% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~s---D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++..+|..+++.++.+.+. ..++...|+++....+ -...+..+.+.+.+.|+.+.+. .....+++..+
T Consensus 26 s~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~ 103 (327)
T PRK10423 26 SEAITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLC--NTEGDEQRMNR 103 (327)
T ss_pred CHHHHHHHHHHHHHHCCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHH
Confidence 34566666666666554310 0112345777764322 2334455667788899776543 44567777677
Q ss_pred hHhhhhhcCCeEEEEeccc-cCcccccccCCCCCceEec
Q 013661 317 YASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVi~~ 354 (438)
+++.+.+++++-+|..... .......+......||+-+
T Consensus 104 ~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i 142 (327)
T PRK10423 104 NLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMM 142 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEE
Confidence 7777777788855554322 1112222222224577665
No 202
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=55.42 E-value=42 Score=33.49 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=28.1
Q ss_pred CceEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 349 LPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 349 ~pVi~~p~~--~~~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
.-+.|||.. +..++.+|+.|+.+-|. || |--|.|+.++.+|
T Consensus 206 ~~~~gvP~GLG~p~f~klda~la~a~~s--IpAvKgve~G~Gf~~a 249 (344)
T cd07304 206 VVATGVPAGLGSPVFDKLDARLAQALMS--IPAVKGVEIGSGFEAA 249 (344)
T ss_pred EEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcchhhh
Confidence 445677774 34578899989887772 34 4488888877754
No 203
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=53.69 E-value=34 Score=26.49 Aligned_cols=56 Identities=14% Similarity=-0.092 Sum_probs=37.1
Q ss_pred eEEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 272 RIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 272 ~v~ii~gs~---sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
.|+|+..+. .+.+.+.+++..|...|+.++.... .++ +..-++.++..|++.++.+
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~---l~k~i~~a~~~g~~~~iii 61 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NER---PGVKFADADLIGIPYRIVV 61 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCC---cccchhHHHhcCCCEEEEE
Confidence 355776655 3567788888999999999887632 233 3444445577899955544
No 204
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=53.36 E-value=1.5e+02 Score=29.27 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCCeEEEEEccCC-------CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCc---
Q 013661 269 VLPRIGIIMGSDS-------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAH--- 338 (438)
Q Consensus 269 ~~~~v~ii~gs~s-------D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~--- 338 (438)
+..+++|++.++. |+ ...-+...|+++|+++.....- --+++.+.+.++++.++|++++|+..|.+..
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~-~~~~l~~~L~~~G~~v~~~~iv-~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg~~D 235 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDK-FGPVLRARLAALGVELVEQVIV-PHDEAAIAAAIAEALEAGAELLILTGGASVDPDD 235 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEh-HHHHHHHHHHHCCCEEEEEEEc-CCCHHHHHHHHHHHhcCCCCEEEEeCCcccCCcc
Confidence 3567777764321 22 2334556789999986544333 3346667777766656678988887766543
Q ss_pred -ccccccCCC-CCceEeccC
Q 013661 339 -LPGMVAART-PLPVIGVPV 356 (438)
Q Consensus 339 -l~~~i~~~~-~~pVi~~p~ 356 (438)
.|..+...- ..-.-++|.
T Consensus 236 ~tp~Ai~~~G~ei~~~Gv~v 255 (312)
T cd03522 236 VTPAAIRAAGGEVIRYGMPV 255 (312)
T ss_pred hHHHHHHhcCceEEEeeecc
Confidence 333443322 222346665
No 205
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=53.17 E-value=36 Score=32.95 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCcE---EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC-CceEeccC
Q 013661 283 LPVMKDAAKILTMFSVPH---EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP-LPVIGVPV 356 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~---~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~-~pVi~~p~ 356 (438)
.+..+...+.|++.|+.. +..+.+++++++++.++++++.+...+++++....++. .+..-... .||+-+-+
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~--~~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQ--ALAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHH--HHHHH-SS-S-EEEECE
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHH--HHHHhcCCCcEEEEEec
Confidence 345556677888888874 66667788888888888888877777877776533221 11122222 78876655
No 206
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=52.99 E-value=1.3e+02 Score=31.09 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCcEEEEEec-CCCChHHHHHhHhhhhhcCCeEEEE--eccccCc-ccccccCCCCCceE--eccCCC
Q 013661 285 VMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIA--GAGGAAH-LPGMVAARTPLPVI--GVPVRA 358 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s-~hr~~~~~~~~~~~~~~~g~~v~i~--~ag~~~~-l~~~i~~~~~~pVi--~~p~~~ 358 (438)
..+++.+.|+..|+++.. .+ .-.+++...+..+.+++.+++.+|+ ...+.++ +...+ ....+||+ ++|...
T Consensus 24 ~~~~~~~~l~~~~~~vv~--~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~-~~~~~Pvll~a~~~~~ 100 (452)
T cd00578 24 YAREVADLLNELPVEVVD--KPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGL-SELRKPVLLLATQFNR 100 (452)
T ss_pred HHHHHHHHHhcCCceEEe--cCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHH-HhcCCCEEEEeCCCCC
Confidence 344445555555554321 11 1245666666666666656665444 2222222 22222 22345665 444321
Q ss_pred C------CCCChhhHHHhhhC--CCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 013661 359 S------ALDGLDSLLSIVQM--PRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYME 414 (438)
Q Consensus 359 ~------~~~g~~~l~s~~~~--~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~ 414 (438)
. ..+++.++++.... -.|+|...+- + -..|+.++++|.+|..
T Consensus 101 ~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~---g-----------~~~d~~~~~~i~~~~r 150 (452)
T cd00578 101 EIPDFMNLNQSACGLREFGNILARLGIPFKVVY---G-----------HWKDEDVLRKIESWAR 150 (452)
T ss_pred CCCchhhhhcchhhhHHHHHHHHHcCCceeEEE---C-----------CCCCHHHHHHHHHHHH
Confidence 1 13344444433322 6778876443 1 1134566666666654
No 207
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=51.94 E-value=39 Score=33.27 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCC-cEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEe
Q 013661 284 PVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIG 353 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~-~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~ 353 (438)
+....+.+.|+++|+ .+...+-++|+++...+.+.+.+..++-+|+++.++-++ -.+++...+.||+-
T Consensus 46 ~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~A--q~~~s~~~~iPVV~ 114 (322)
T COG2984 46 AAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAA--QALVSATKTIPVVF 114 (322)
T ss_pred HHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHH--HHHHHhcCCCCEEE
Confidence 555666788999999 566667789999999888998888878888888775332 12333344478884
No 208
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=51.70 E-value=62 Score=32.54 Aligned_cols=142 Identities=17% Similarity=0.305 Sum_probs=82.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCCe---EEEEeccc-cCccccccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGG-AAHLPGMVA 344 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~~---v~i~~ag~-~~~l~~~i~ 344 (438)
++.|++-..-..-.+.++...|+..|+..+.-++. ..++.+.+.+....+-+.++. .+|+..|+ -..|.|++|
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A 114 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA 114 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 56666544434445688888999999997544443 456666555555555555655 77777765 568999887
Q ss_pred C--CCCCceEeccCC-----CCCCCCh---h-----hHHHhhhCCCCCceE-----EEEeCCcchHHHH-HHHHHcCCCh
Q 013661 345 A--RTPLPVIGVPVR-----ASALDGL---D-----SLLSIVQMPRGVPVA-----TVAINNATNAGLL-AVRMLGFGDA 403 (438)
Q Consensus 345 ~--~~~~pVi~~p~~-----~~~~~g~---~-----~l~s~~~~~~g~p~~-----tv~~~~~~~Aa~~-a~~il~~~~~ 403 (438)
+ .--.+.|.+|+. .++-+|- + .|+-..-.|.-|=+- |+. ..-..+++. +++.--+.|+
T Consensus 115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp-~re~~~G~AEvIK~g~I~D~ 193 (360)
T COG0337 115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLP-PRELRAGMAEVIKYGLIADP 193 (360)
T ss_pred HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchHHhccCC-HHHHHHhHHHHHHHhhhcCH
Confidence 6 456899999996 1222222 1 122222233332110 111 012234443 3555555799
Q ss_pred HHHHHHHHHHH
Q 013661 404 DLRARMQQYME 414 (438)
Q Consensus 404 ~~~~~l~~~~~ 414 (438)
+++..|++...
T Consensus 194 ~~f~~Le~~~~ 204 (360)
T COG0337 194 EFFDWLEENLD 204 (360)
T ss_pred HHHHHHHHHHH
Confidence 99888888633
No 209
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=50.91 E-value=83 Score=29.77 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=35.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE--------ecCCCChHHHHHhHhhhhhcCCe-EEEEec
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI--------VSAHRTPDLMFSYASSAHERGIE-IIIAGA 333 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v--------~s~hr~~~~~~~~~~~~~~~g~~-v~i~~a 333 (438)
+++++++ .-..+.-+...+.|++.||++.... --++-+|+.+.+.+++....+++ ||+.|+
T Consensus 121 ~RIalvT--PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT 190 (239)
T TIGR02990 121 RRISLLT--PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT 190 (239)
T ss_pred CEEEEEC--CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4565663 4455666667778888888864321 01245677777777655444555 445554
No 210
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=50.64 E-value=30 Score=37.93 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=69.6
Q ss_pred hCCcEEEEecCCCCCCcCeEEeCC--H-HHHHHHHHHhcC------------CCCcEEEeeccC-CCeEEEEEEEEcC--
Q 013661 16 FGYPLMVKSKRLAYDGRGNAVAKS--E-EELSSAITALGG------------FDRGLYVEKWAP-FVKELAVIVVRGR-- 77 (438)
Q Consensus 16 igyPvvvKP~~~g~gg~Gv~~v~~--~-~el~~~~~~~~~------------~~~~~lvEe~I~-g~~e~sv~~~~d~-- 77 (438)
+.-|+|=||..+- -..|++-+- . ..-++.+++++. ..+.++-|||++ ++.++-|-.+.-.
T Consensus 177 f~KPFVEKPVs~E--DHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~Ya 254 (1018)
T KOG1057|consen 177 FQKPFVEKPVSAE--DHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYA 254 (1018)
T ss_pred ccCCcccCCCCcc--cccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchh
Confidence 4468999997532 355554431 1 123344454431 126799999998 3455555444210
Q ss_pred CCeEEEEeee-eeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcC
Q 013661 78 DKSILCYPVV-ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP 149 (438)
Q Consensus 78 ~G~~~~~~~~-e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp 149 (438)
+-+..--|.. ..+.++.+......|.-|+++. +.+|.+++-+++- -++++|++.. +|.-||++||.
T Consensus 255 HAEaRKSPvvDGkV~Rns~GKEvRYpv~Ls~~E----K~iA~KVciAF~Q-~VCGFDLLRa-~G~SYVcDVNG 321 (1018)
T KOG1057|consen 255 HAEARKSPVVDGKVERNSDGKEVRYPVILNSSE----KQIARKVCIAFKQ-TVCGFDLLRA-NGKSYVCDVNG 321 (1018)
T ss_pred hhhhccCccccceeeecCCCceeeceeecChhh----HHHHhHHHhhccc-cccchHHhhc-CCceEEEeccc
Confidence 0011111111 2233333323344577677653 4567888888763 5777897664 78999999995
No 211
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=50.29 E-value=1.1e+02 Score=25.01 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=33.4
Q ss_pred EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 301 ~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
-+-++|..|...++.+.++.++++|++|+.......+-|... ..-++-+|.
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~-----ad~~l~~~~ 100 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKL-----SDVVLDLPV 100 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhh-----CCEEEECCC
Confidence 355567788888899999999999999776554333333332 334555554
No 212
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=50.21 E-value=62 Score=31.39 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCC------CCceEecc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART------PLPVIGVP 355 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~------~~pVi~~p 355 (438)
......++.+.|++.|++++.......++ ..++.+++...+.++++ ++|+.+-+-.++.+.. ..|+--+|
T Consensus 12 ~~~~~~~~~~~l~~~g~~~~v~~t~~~~~---a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP 87 (293)
T TIGR03702 12 DNEDVREAVGDLRDEGIQLHVRVTWEKGD---AQRYVAEALALGVSTVI-AGGGDGTLREVATALAQIRDDAAPALGLLP 87 (293)
T ss_pred chhHHHHHHHHHHHCCCeEEEEEecCCCC---HHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHHhhCCCCCCcEEEEc
Confidence 44566677778999999877664333333 44555555556777666 4456665555554431 22455568
Q ss_pred CCC
Q 013661 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
..+
T Consensus 88 ~GT 90 (293)
T TIGR03702 88 LGT 90 (293)
T ss_pred CCc
Confidence 753
No 213
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=49.00 E-value=51 Score=32.98 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=38.9
Q ss_pred ccCCHHHHHHHHHhhCC-cEEEEecCCCCCCc-----------CeEEeCCHHHHHHHHHHhc
Q 013661 2 EVNDLESARRAGKQFGY-PLMVKSKRLAYDGR-----------GNAVAKSEEELSSAITALG 51 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igy-PvvvKP~~~g~gg~-----------Gv~~v~~~~el~~~~~~~~ 51 (438)
.+.|+||+.++++++|- -+|||.-... ||| ||.+|.+++|.++...++.
T Consensus 46 vA~speEA~~~akklg~kdlVikAQ~lA-gGRgKGtF~SglkgGV~iVf~p~Eak~va~qmi 106 (434)
T KOG2799|consen 46 VAKSPEEAFAIAKKLGSKDLVIKAQVLA-GGRGKGTFDSGLKGGVKIVFSPQEAKAVASQMI 106 (434)
T ss_pred ccCCHHHHHHHHHHhCCcceEEEeeecc-cCcccCCcCcCcCCceEEEeChHHHHHHHHHhh
Confidence 46799999999999984 6999996543 444 6899999999888776653
No 214
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=48.02 E-value=2e+02 Score=25.44 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcc
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~---------------~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
++.|..+....++.....|..+|.++. +-++|..|...++.+.++.+++.|++++....-..+.|
T Consensus 37 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 37 FVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred EEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 444544445555555555555555432 34466666677788888888888888654332122222
Q ss_pred cccccCCCCCceEeccCCC
Q 013661 340 PGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 340 ~~~i~~~~~~pVi~~p~~~ 358 (438)
.. ...-++-+|...
T Consensus 117 a~-----~ad~~l~~~~~~ 130 (179)
T cd05005 117 AK-----LADVVVVIPAAT 130 (179)
T ss_pred HH-----hCCEEEEeCCcc
Confidence 22 234567777653
No 215
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=47.82 E-value=71 Score=27.98 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=35.6
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEE----EEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHE----VRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 271 ~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~----~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
-+++|+.+.-.+ -.-++.+.+.|+++|...+ ++|-++--.|-...++. +...++.+|+
T Consensus 13 ~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La---~~~~yDAvv~ 77 (152)
T COG0054 13 LRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLA---RTGKYDAVVA 77 (152)
T ss_pred ceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHH---hcCCcceEEE
Confidence 466677654221 1344556788889998865 67777777784433344 4444777765
No 216
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=47.70 E-value=2.5e+02 Score=26.84 Aligned_cols=106 Identities=19% Similarity=0.283 Sum_probs=58.3
Q ss_pred eEEEEEccCCCH---HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe-cccc-CcccccccCC
Q 013661 272 RIGIIMGSDSDL---PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG-AGGA-AHLPGMVAAR 346 (438)
Q Consensus 272 ~v~ii~gs~sD~---~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~-ag~~-~~l~~~i~~~ 346 (438)
.+++|.-..++- ..+..+.+.+++.|+.+-+ +....+++.- ++++.+.++.++=+|.. .... .++......
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l--~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~- 78 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLL--CNTGDDEEKE-EYIELLLQRRVDGIILASSENDDEELRRLIKS- 78 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEE--EEETTTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEE--ecCCCchHHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc-
Confidence 455665555442 2333445666778887544 2446777765 88888888888844433 2222 234444433
Q ss_pred CCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHH
Q 013661 347 TPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML 398 (438)
Q Consensus 347 ~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il 398 (438)
..|||-+=... ++ +.++|+..++ -..|+..|.+-|
T Consensus 79 -~iPvV~~~~~~---~~----------~~~~~~V~~D---~~~a~~~a~~~L 113 (279)
T PF00532_consen 79 -GIPVVLIDRYI---DN----------PEGVPSVYID---NYEAGYEATEYL 113 (279)
T ss_dssp -TSEEEEESS-S---CT----------TCTSCEEEEE---HHHHHHHHHHHH
T ss_pred -CCCEEEEEecc---CC----------cccCCEEEEc---chHHHHHHHHHH
Confidence 56777652211 11 2456666554 446666776664
No 217
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=47.37 E-value=1.6e+02 Score=24.11 Aligned_cols=52 Identities=21% Similarity=0.128 Sum_probs=28.6
Q ss_pred EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCC
Q 013661 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 357 (438)
-+-++|..|....+.+.++.++++|++++.......+.+.. ..+-+|-+|+.
T Consensus 63 ~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~-----~~d~~i~~~~~ 114 (139)
T cd05013 63 VVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAK-----LADIVLLVSSE 114 (139)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHH-----hcCEEEEcCCC
Confidence 34455666666667777777777777754433322222222 33455666664
No 218
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=47.19 E-value=3e+02 Score=29.34 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=61.1
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCh--
Q 013661 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTP-- 311 (438)
Q Consensus 234 ~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~-- 311 (438)
.++-.++..-..-+. ..++..++.... ..+-++|+ ..+..+..+++.|++.|+.++.- |+.-
T Consensus 490 ~rveQ~v~m~~ed~k-~kkL~eil~~~~-------~ppiIIFv----N~kk~~d~lAk~LeK~g~~~~tl----Hg~k~q 553 (673)
T KOG0333|consen 490 PRVEQKVEMVSEDEK-RKKLIEILESNF-------DPPIIIFV----NTKKGADALAKILEKAGYKVTTL----HGGKSQ 553 (673)
T ss_pred cchheEEEEecchHH-HHHHHHHHHhCC-------CCCEEEEE----echhhHHHHHHHHhhccceEEEe----eCCccH
Confidence 444444443333333 777777777531 23444343 45788999999999999886555 6652
Q ss_pred HHHHHhHhhhhhcCCeEEEE--eccccCcccccccCCCCCceEeccC
Q 013661 312 DLMFSYASSAHERGIEIIIA--GAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~--~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
+.-+..+..+++.-.+|++| +||+-=.+|+| -.|||--.
T Consensus 554 eQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnV------SlVinydm 594 (673)
T KOG0333|consen 554 EQRENALADFREGTGDILVATDVAGRGIDIPNV------SLVINYDM 594 (673)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCCCCcc------ceeeecch
Confidence 32334566667656678886 55655566665 25777543
No 219
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.58 E-value=1.5e+02 Score=26.17 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=42.2
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-CCChHHHHHhHhhhhhcCCeEE
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEII 329 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~-hr~~~~~~~~~~~~~~~g~~v~ 329 (438)
..+.|.|++|+..+=....-+++.|...|+++.+-.... .+..+.....++.+++-|.+++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 457888999998888889999999999999987744432 2334445666666777666554
No 220
>PRK14686 hypothetical protein; Provisional
Probab=46.28 E-value=66 Score=26.88 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++..|| + +...+|++..+++.+.|+||-.|.+.
T Consensus 10 ~gE~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa~~~~~lvFVEVKtR~~~ 59 (119)
T PRK14686 10 EGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSS 59 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCCCCcEEEEECcCCEEEEEEEEecCCC
Confidence 456777888888775 2 45679999887788999999999874
No 221
>PRK12757 cell division protein FtsN; Provisional
Probab=46.24 E-value=1.5e+02 Score=28.27 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=42.7
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE--------EecCCCChHHHHHhHhhhhhcCCe-EEEEeccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR--------IVSAHRTPDLMFSYASSAHERGIE-IIIAGAGG 335 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~--------v~s~hr~~~~~~~~~~~~~~~g~~-v~i~~ag~ 335 (438)
...|=.|+-++...++.+...|...|++..+. .++...+.+...++...++..|+. ++++.+|+
T Consensus 184 ~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 184 RWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 33355777888888888888887777652211 145566677777777777777774 77766653
No 222
>PRK04247 hypothetical protein; Provisional
Probab=45.91 E-value=2.3e+02 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=25.2
Q ss_pred eEEEEEEEE-eCCCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHHHHh
Q 013661 128 GIFAVELFW-TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVV 175 (438)
Q Consensus 128 G~~~ve~~~-~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~~~ 175 (438)
+...+|++- |++|.+.|+|+-.|-++ .+-+.|..+..-
T Consensus 158 ~~G~IDila~D~~G~lViVEvKrr~~~----------~~~V~Ql~rY~~ 196 (238)
T PRK04247 158 PAGIIDILGRDKDGNLVVLELKRRRAG----------LSAVSQLKRYVE 196 (238)
T ss_pred CCCceeEEEECCCCCEEEEEEEEccCC----------hhHHHHHHHHHH
Confidence 335678664 45688999999999653 455555555543
No 223
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=45.75 E-value=1.6e+02 Score=25.96 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=44.4
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcc
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~---------------~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
++.|.......++.....|..+|..+. +-++|-.|....+.+.++.++++|++++....-..+-|
T Consensus 34 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 34 FVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred EEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 455544445556666666666665432 34456666667788888888888888665433222233
Q ss_pred cccccCCCCCceEeccCC
Q 013661 340 PGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 340 ~~~i~~~~~~pVi~~p~~ 357 (438)
... ..-++-+|..
T Consensus 114 a~~-----ad~~l~~~~~ 126 (179)
T TIGR03127 114 GKL-----ADVVVEIPAA 126 (179)
T ss_pred HHh-----CCEEEEeCCc
Confidence 322 3445666664
No 224
>PRK11914 diacylglycerol kinase; Reviewed
Probab=45.70 E-value=82 Score=30.69 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=46.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC--CCCCceEecc
Q 013661 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RTPLPVIGVP 355 (438)
Q Consensus 278 gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~~pVi~~p 355 (438)
|+........++.+.|++.|+++..... .. +....++.+++.+.+++++|++ |+.+-+-.++.+ .+..|+--+|
T Consensus 20 G~g~~~~~~~~~~~~l~~~g~~~~~~~t--~~-~~~~~~~a~~~~~~~~d~vvv~-GGDGTi~evv~~l~~~~~~lgiiP 95 (306)
T PRK11914 20 GHGAAPHAAERAIARLHHRGVDVVEIVG--TD-AHDARHLVAAALAKGTDALVVV-GGDGVISNALQVLAGTDIPLGIIP 95 (306)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEEe--CC-HHHHHHHHHHHHhcCCCEEEEE-CCchHHHHHhHHhccCCCcEEEEe
Confidence 3344456677888889999988765432 22 5566777777666778876644 555544444433 2344544557
Q ss_pred CCC
Q 013661 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
..+
T Consensus 96 ~GT 98 (306)
T PRK11914 96 AGT 98 (306)
T ss_pred CCC
Confidence 653
No 225
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.30 E-value=74 Score=26.30 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=37.5
Q ss_pred CeEEEEEcc--CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs--~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..+ +.....+.+++..|...|+.++.... +. +.+-++.++..|++..+.+
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~s---l~kqlk~A~k~g~~~~iii 84 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---GS---IGRRYARQDEIGTPFCVTV 84 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---CC---HHHHHHHhHhcCCCEEEEE
Confidence 455566555 45566788888899999999888731 43 4444555577899955544
No 226
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=45.02 E-value=67 Score=28.59 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec-cccCccccccc--------CCCCCceEecc
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVA--------ARTPLPVIGVP 355 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~--------~~~~~pVi~~p 355 (438)
...++.+.-+..|.++++.. .|||.++...+.+.+++.|.+.+.... ..+..+|++-. |....=|+=||
T Consensus 19 ~p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy~ADVVLVP 96 (178)
T PF02006_consen 19 VPEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIYSADVVLVP 96 (178)
T ss_pred ChHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccceeccEEEec
Confidence 34566777788999999985 599999999999999999998554432 12335666532 23345577778
Q ss_pred CC
Q 013661 356 VR 357 (438)
Q Consensus 356 ~~ 357 (438)
..
T Consensus 97 LE 98 (178)
T PF02006_consen 97 LE 98 (178)
T ss_pred cC
Confidence 74
No 227
>PRK05382 chorismate synthase; Validated
Probab=44.78 E-value=82 Score=31.69 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=27.8
Q ss_pred CceEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 349 LPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 349 ~pVi~~p~~--~~~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
.-|.|||+. +..++.+|+.|+.+-|. || |--|.|+.++.+|
T Consensus 204 ~~~~gvP~GLG~p~f~kLda~la~a~ms--IpAvKgvE~G~Gf~~a 247 (359)
T PRK05382 204 VVAEGVPAGLGEPVFDKLDADLAHALMS--INAVKGVEIGDGFAAA 247 (359)
T ss_pred EEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcchhhc
Confidence 345677774 34578999989887772 33 4488888777644
No 228
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.41 E-value=92 Score=23.29 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=36.1
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
|.|+..++.+...+.+++..|...|+.++..... +.++. .++.++..|++.++..
T Consensus 4 v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~---~~~~a~~~~~~~~i~i 58 (91)
T cd00859 4 VYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKK---QFKYADRSGARFAVIL 58 (91)
T ss_pred EEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHH---HHHHHHHcCCCEEEEE
Confidence 4566656666778888899999999988776422 33333 3334467788755544
No 229
>PRK13054 lipid kinase; Reviewed
Probab=43.72 E-value=83 Score=30.61 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
-.....++...|.+.|+++++.... .+....++.+++...+.+++++ +|+.+.+-.++.+
T Consensus 16 ~~~~~~~~~~~l~~~g~~~~v~~t~---~~~~a~~~a~~~~~~~~d~vvv-~GGDGTl~evv~~ 75 (300)
T PRK13054 16 GNEELREAVGLLREEGHTLHVRVTW---EKGDAARYVEEALALGVATVIA-GGGDGTINEVATA 75 (300)
T ss_pred chHHHHHHHHHHHHcCCEEEEEEec---CCCcHHHHHHHHHHcCCCEEEE-ECCccHHHHHHHH
Confidence 3456777777899999988765433 2333455666555567776664 4666666666544
No 230
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=43.02 E-value=3.1e+02 Score=26.35 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
++..+|..+++.++.+.+. ...+...++++....++ ...+..+.+.+++.|+.+... .....+++..++
T Consensus 31 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~--~~~~~~~~~~~~ 108 (327)
T TIGR02417 31 QETVERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIA--CSDDNPDQEKVV 108 (327)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHH
Confidence 5677777777777665320 00123467777643222 233455566777888876543 445677776777
Q ss_pred HhhhhhcCCeEEEEec
Q 013661 318 ASSAHERGIEIIIAGA 333 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~a 333 (438)
++.+..++++-+|...
T Consensus 109 ~~~l~~~~vdgiIi~~ 124 (327)
T TIGR02417 109 IENLLARQVDALIVAS 124 (327)
T ss_pred HHHHHHcCCCEEEEeC
Confidence 7777778888666543
No 231
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=41.82 E-value=65 Score=32.22 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=26.9
Q ss_pred CceEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 349 LPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 349 ~pVi~~p~~--~~~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
.-|.|||+. +..+|.+|+.|+..-|. || |--|.++.++.+|
T Consensus 204 ~~~~gvP~GLG~p~fdkLda~la~al~s--IpAvKgvEfG~Gf~~a 247 (346)
T PF01264_consen 204 VVATGVPAGLGSPVFDKLDARLAQALMS--IPAVKGVEFGDGFEAA 247 (346)
T ss_dssp EEEES--TT-SBSSCCSHHHHHHHHHHT--STTEEEEEETTGGGGG
T ss_pred EEEEecCCCCCCCCcCcHHHHHHHHhhC--CCCeeeEEecCcHHHh
Confidence 345677774 34588999999776662 22 6688888887754
No 232
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.96 E-value=93 Score=29.68 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=35.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCC-ChHHHHHhHhhhhhcCCeEE
Q 013661 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHR-TPDLMFSYASSAHERGIEII 329 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr-~~~~~~~~~~~~~~~g~~v~ 329 (438)
+.||...++++++..++.|+.+.+.+..+++ +|+.+.++.+.+.+.|++.+
T Consensus 107 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 107 HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 5566677777777778888777766644444 46777777777777777754
No 233
>PRK08862 short chain dehydrogenase; Provisional
Probab=40.89 E-value=1.4e+02 Score=27.52 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=45.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+..=-.+-+.+.+.. ...| ++.+ .+...++++.+.++..|.+...-.+. -.+++.+.++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~----------G~~V-~~~~--r~~~~l~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~ 72 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARL----------GATL-ILCD--QDQSALKDTYEQCSALTDNVYSFQLK-DFSQESIRHL 72 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHC----------CCEE-EEEc--CCHHHHHHHHHHHHhcCCCeEEEEcc-CCCHHHHHHH
Confidence 3555665554444444443331 2344 3333 34566777776677767553322222 3467777777
Q ss_pred Hhhhhh--c-CCeEEEEeccc
Q 013661 318 ASSAHE--R-GIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~-g~~v~i~~ag~ 335 (438)
+++..+ . .++++|..+|.
T Consensus 73 ~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 73 FDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHhCCCCCEEEECCcc
Confidence 766533 2 47888888763
No 234
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=40.88 E-value=3.6e+02 Score=26.50 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=62.8
Q ss_pred CCeEEEEEccCC-----CHH----HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccc
Q 013661 270 LPRIGIIMGSDS-----DLP----VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 340 (438)
Q Consensus 270 ~~~v~ii~gs~s-----D~~----~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 340 (438)
.+.++++.|++| |.. .+..+.+.++..|..+.++ .-.|||.++.+.+++.-+..-.+.+--..+.|=+.
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vt--tSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~ 223 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVT--TSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYL 223 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEE--cCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHH
Confidence 577888888755 333 4455566666777555555 55999999999887765323334232333455567
Q ss_pred ccccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCC
Q 013661 341 GMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 341 ~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~ 386 (438)
++++. .+-|+-++-|. +|+ +.++..|.||.++....
T Consensus 224 ~~La~--ad~i~VT~DSv-------SMv-sEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 224 GFLAA--ADAIVVTEDSV-------SMV-SEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHh--CCEEEEcCccH-------HHH-HHHHHcCCCEEEecCCC
Confidence 77643 33344443321 122 34567889999887543
No 235
>PRK14674 hypothetical protein; Provisional
Probab=40.83 E-value=80 Score=27.00 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
-++.+.+.++.-|| + +...+|++..+++.+.|+||-.|.+.
T Consensus 11 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVFVEVK~R~~~ 59 (133)
T PRK14674 11 AEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQG 59 (133)
T ss_pred HHHHHHHHHHHCCCEEeEEeeecCCCCEeEEEEeCCEEEEEEEEecCCC
Confidence 45677777777775 2 45679999887778999999999864
No 236
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.62 E-value=1e+02 Score=30.81 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=35.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC-hHHHHHhHhhhhhcCCeEE
Q 013661 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEII 329 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~-~~~~~~~~~~~~~~g~~v~ 329 (438)
..++...+.+..+..+++|+.+.+....+|+. |+.+.++.+.+++-|++.+
T Consensus 110 ~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 110 HCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE
Confidence 45566677777777777787777777666765 5666677777666677754
No 237
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.91 E-value=88 Score=26.27 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC-HHHHHHHHHHhcC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG 52 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~-~~el~~~~~~~~~ 52 (438)
..|+.++.+.+.++++|+.||-...| . +++. ++++.+..+.+.+
T Consensus 16 ~vsp~elv~~l~~~~~PvtiKeTCfG-----a-ii~G~Ed~v~klveriR~ 60 (142)
T COG4029 16 GVSPKELVQKLLELSPPVTIKETCFG-----A-IIDGPEDEVRKLVERIRE 60 (142)
T ss_pred CcChHHHHHHHHhcCCCeEeeeeeee-----e-eecCcHHHHHHHHHHHHH
Confidence 45788999999999999999997643 2 4554 4555566666543
No 238
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=39.49 E-value=3e+02 Score=28.90 Aligned_cols=102 Identities=11% Similarity=-0.052 Sum_probs=57.9
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEE----EccCCCHHHHH-HHHHHHHHcCCcEEEEEecCCCCh
Q 013661 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGII----MGSDSDLPVMK-DAAKILTMFSVPHEVRIVSAHRTP 311 (438)
Q Consensus 237 G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii----~gs~sD~~~~~-~~~~~l~~~G~~~~~~v~s~hr~~ 311 (438)
..+...-.+.+++..=.+...+.++.. ...+++.|| +|..+...... .+...|+..|+++++...-..
T Consensus 82 ~~~~~~~~~~~~~~~w~~~~~~~~~~~----~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~--- 154 (481)
T PLN02958 82 KDFVFEPLSDESRRLWCQKLRDYLDSL----GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ--- 154 (481)
T ss_pred eeEEEeCCCHHHHHHHHHHHHHHHhhc----cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc---
Confidence 344445567777766666665555432 123445455 34444344444 466689999999877654322
Q ss_pred HHHHHhHhhhhhcCCeEEEEeccccCcccccccCC
Q 013661 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
....++.+++...+++.+|++ |+.+-+-.++.|.
T Consensus 155 ghA~~la~~~~~~~~D~VV~v-GGDGTlnEVvNGL 188 (481)
T PLN02958 155 LHAKEVVRTMDLSKYDGIVCV-SGDGILVEVVNGL 188 (481)
T ss_pred cHHHHHHHHhhhcCCCEEEEE-cCCCHHHHHHHHH
Confidence 334556666555677776655 4555555555443
No 239
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=39.10 E-value=2.5e+02 Score=27.68 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=47.2
Q ss_pred hhhhhcCCeEEEEeccccCccccc------------ccC-CCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC
Q 013661 319 SSAHERGIEIIIAGAGGAAHLPGM------------VAA-RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 319 ~~~~~~g~~v~i~~ag~~~~l~~~------------i~~-~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~ 385 (438)
++.+.+|-+.++...|+++.+..+ ... ...+-|+.+|.+++...|+. .-..+.-+.++|.++++
T Consensus 139 e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~--~g~~~~~~~~~ViG~~v- 215 (323)
T COG2515 139 EEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLL--VGLAQLGPDVEVIGIDV- 215 (323)
T ss_pred HHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHH--HHhhhccCCCceEEEee-
Confidence 334677888888888876553332 111 34567888888766666665 45555668888887764
Q ss_pred CcchHHHHHHHHHc
Q 013661 386 NATNAGLLAVRMLG 399 (438)
Q Consensus 386 ~~~~Aa~~a~~il~ 399 (438)
..+...+..|++.
T Consensus 216 -~~~~~~~~~qv~~ 228 (323)
T COG2515 216 -SADPEKLKEQVLN 228 (323)
T ss_pred -cCCHHHHHHHHHH
Confidence 3344455555543
No 240
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=26 Score=36.12 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHH
Q 013661 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSS 45 (438)
Q Consensus 7 ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~ 45 (438)
.++-+.++...-|+++|| ++|+.|.|++.+.+..+..+
T Consensus 216 ~df~a~~~~~Krtfivkp-Dsgaqg~giylisDir~~g~ 253 (565)
T KOG2158|consen 216 CDFPASTEIMKRTFIVKP-DSGAQGSGIYLISDIREKGE 253 (565)
T ss_pred HHHHHHHHHhcccEEECC-CCCCCCcceeeechhhhhhH
Confidence 344555556667999999 45569999999976655544
No 241
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.55 E-value=78 Score=30.55 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=44.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC---CCCceEe-
Q 013661 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR---TPLPVIG- 353 (438)
Q Consensus 278 gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~---~~~pVi~- 353 (438)
|+........++.+.|++.|+++...... ++ ....++++...+.+.+++++ .|+.+.+-.++.+. ...|.++
T Consensus 13 g~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~ivv-~GGDGTl~~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 13 GKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVIA-GGGDGTINEVVNALIQLDDIPALGI 88 (293)
T ss_pred cchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEEE-ECCCChHHHHHHHHhcCCCCCcEEE
Confidence 44344566778888899999987664322 22 11233344444456776665 46676666655432 3456777
Q ss_pred ccCC
Q 013661 354 VPVR 357 (438)
Q Consensus 354 ~p~~ 357 (438)
+|.+
T Consensus 89 iP~G 92 (293)
T TIGR00147 89 LPLG 92 (293)
T ss_pred EcCc
Confidence 7875
No 242
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.46 E-value=2.2e+02 Score=23.24 Aligned_cols=55 Identities=29% Similarity=0.340 Sum_probs=36.4
Q ss_pred EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCC
Q 013661 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 301 ~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~ 358 (438)
-+-++|-.+...++.+.++.++++|++++..... . .|..+. .....++|-+|...
T Consensus 46 l~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~-~-~l~~~~-~~~~~~~~~~p~~~ 100 (119)
T cd05017 46 LVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG-G-KLLEMA-REHGVPVIIIPKGL 100 (119)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC-c-hHHHHH-HHcCCcEEECCCCC
Confidence 3555677777777888888888888886644332 2 366643 33367888888753
No 243
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=37.92 E-value=94 Score=29.41 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHH-----------HHHhHhhhhhcCCeEEE
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL-----------MFSYASSAHERGIEIII 330 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~-----------~~~~~~~~~~~g~~v~i 330 (438)
.+|.+.++++++.|.+.|+++-+.|+..+..|.. +.++++.++.+|-.+..
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 4899999999999999999999999887776654 44566667777876654
No 244
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=37.90 E-value=1.7e+02 Score=23.86 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 302 VRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 302 ~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
+-++|..+...++.+.++.+++.|++++.
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~ 85 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVIL 85 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEE
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEE
Confidence 45566677777777777777888888643
No 245
>PRK05867 short chain dehydrogenase; Provisional
Probab=37.90 E-value=1.5e+02 Score=27.43 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.++++.+.++..|-.+..-.+. -..++.+.+++++..+ ..++++|-.+|.
T Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 42 HLDALEKLADEIGTSGGKVVPVCCD-VSQHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4455666666666655443322222 2345555555544322 256777776653
No 246
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=37.78 E-value=2.5e+02 Score=27.23 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++..++..+++.++.+.+. ..++...++++....++ ......+.+.++++|+.+... ..+..+++..+
T Consensus 29 s~~tr~~V~~~a~elgY~pn~~a~~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~ 106 (341)
T PRK10703 29 AEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILC--NAWNNLEKQRA 106 (341)
T ss_pred CHHHHHHHHHHHHHHCCCcCHHHHHHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHH
Confidence 45566666666665544210 00122456666543222 223345566777889775543 55777887778
Q ss_pred hHhhhhhcCCeEEEEec
Q 013661 317 YASSAHERGIEIIIAGA 333 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~a 333 (438)
+++.+..++++.+|...
T Consensus 107 ~i~~l~~~~vdgiii~~ 123 (341)
T PRK10703 107 YLSMLAQKRVDGLLVMC 123 (341)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 88887788888666544
No 247
>PRK15482 transcriptional regulator MurR; Provisional
Probab=37.77 E-value=3.7e+02 Score=25.70 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=28.6
Q ss_pred EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCC
Q 013661 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 302 ~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 357 (438)
+-++|..|...++.+.++.++++|++++.......+.|.. -..-++-+|..
T Consensus 186 ~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~-----~ad~~l~~~~~ 236 (285)
T PRK15482 186 QIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRR-----LAHFTLDTVSG 236 (285)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH-----hCCEEEEcCCC
Confidence 3344556666667888888888888865443322223322 23445666654
No 248
>PRK14680 hypothetical protein; Provisional
Probab=37.62 E-value=1.1e+02 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + ....+|++..+++.+.|+||-.|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKtR~~~ 60 (134)
T PRK14680 11 HGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAH 60 (134)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEeCCEEEEEEEEecCCC
Confidence 346677777777775 2 45679999876778999999999763
No 249
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=37.50 E-value=1.6e+02 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHcCCcE
Q 013661 281 SDLPVMKDAAKILTMFSVPH 300 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~ 300 (438)
.|...+.++++.|++.|..+
T Consensus 162 ~~~~~l~~Aa~~L~~~gadl 181 (221)
T PF07302_consen 162 GDEEELAAAARELAEQGADL 181 (221)
T ss_pred CCHHHHHHHHHHHHhcCCCE
Confidence 36677777777777777663
No 250
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.49 E-value=1.2e+02 Score=30.12 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=38.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC-hHHHHHhHhhhhhcCCeEE
Q 013661 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEII 329 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~-~~~~~~~~~~~~~~g~~v~ 329 (438)
..++....++..+..+++|+.+...+..+|++ |+.+.++.+.+++-|++++
T Consensus 109 ~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 109 HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 45666778888888888898887777767765 5777778877777788755
No 251
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.40 E-value=5.1e+02 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=18.3
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
+|.|++|.-.+=--..-+++.|...|+++.+-.
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 93 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICY 93 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEE
Confidence 455555555555555555556655565544443
No 252
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=37.24 E-value=96 Score=29.24 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=46.5
Q ss_pred HHHHcCCcEEEEE-ec--CCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 292 ILTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 292 ~l~~~G~~~~~~v-~s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
.++.+|++....+ .+ .-=+|+++.++.+.+++.++++++.-.+.+..+...++..+..||+.+.+
T Consensus 163 ~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 163 FAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp HHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESST
T ss_pred HHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 4478999976665 12 12358888999988999999999998888888888888888888877754
No 253
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=37.03 E-value=2.9e+02 Score=24.26 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred CeEEEEEccCC-----CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhh-hcCCeEEEEeccccCccccccc
Q 013661 271 PRIGIIMGSDS-----DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH-ERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 271 ~~v~ii~gs~s-----D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~-~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
.++++++.|++ |. ...-+...|+++|+++....+ ..-+++.+.+.++++- ..++++++...|.+..--++..
T Consensus 5 ~rv~vit~~d~~~~~~d~-n~~~l~~~L~~~G~~v~~~~i-v~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ 82 (163)
T TIGR02667 5 LRIAILTVSDTRTEEDDT-SGQYLVERLTEAGHRLADRAI-VKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTP 82 (163)
T ss_pred cEEEEEEEeCcCCccCCC-cHHHHHHHHHHCCCeEEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcH
Confidence 45666655542 21 122445568999998543211 2456676777666542 3468888876554433333221
Q ss_pred CCCCCceEeccCCCCCCCChhhHHHhhhC-CCCCc
Q 013661 345 ARTPLPVIGVPVRASALDGLDSLLSIVQM-PRGVP 378 (438)
Q Consensus 345 ~~~~~pVi~~p~~~~~~~g~~~l~s~~~~-~~g~p 378 (438)
. ...+++. ..+.|..-+++.+.| |.|-|
T Consensus 83 e-al~~l~~-----~~l~G~~~~~~~i~~~p~G~~ 111 (163)
T TIGR02667 83 E-ALEPLFD-----KTVEGFGELFRQLSYEEIGTS 111 (163)
T ss_pred H-HHHHHHC-----CcCCcHHHHHHHHhhcccCHH
Confidence 1 0011222 234465556777777 33655
No 254
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=3.6e+02 Score=25.19 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEecCCC-ChHHHHHhHhh
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHR-TPDLMFSYASS 320 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~s--D~~~~~~~~~~l~~~G~~~~~~v~s~hr-~~~~~~~~~~~ 320 (438)
-++-.++..+..+++.-+. ++++-+++++.||.- +...+...++.|++.++.++.-..+-+. .++.+.+|+..
T Consensus 85 ~~~~~~i~iA~lalkhRqn----k~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida 160 (259)
T KOG2884|consen 85 ANFMTGIQIAQLALKHRQN----KNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDA 160 (259)
T ss_pred ccHHHHHHHHHHHHHhhcC----CCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHH
Confidence 5788899999998886442 223346667777742 4457888899999999999877666443 35778888865
Q ss_pred h
Q 013661 321 A 321 (438)
Q Consensus 321 ~ 321 (438)
.
T Consensus 161 ~ 161 (259)
T KOG2884|consen 161 L 161 (259)
T ss_pred h
Confidence 4
No 255
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=36.34 E-value=1.5e+02 Score=28.49 Aligned_cols=47 Identities=4% Similarity=-0.041 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCC-hHHHHHhHhhhhhcCCe
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIE 327 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~-~~~~~~~~~~~~~~g~~ 327 (438)
++.+.+.++.+..++.|+.+.+....+.|+ |+.+.++++.+.+.|++
T Consensus 106 ~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~ 153 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPD 153 (266)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCC
Confidence 445555555555555555554444444433 34444455554444444
No 256
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=36.32 E-value=3.6e+02 Score=28.51 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=72.9
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 237 G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
..++....--.||+..++.--..+.+ =-+.++.+.+.=+|.-.++..+++..|.|+.+-+-=..|.......
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtD--------IaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~ 126 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTD--------IAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDK 126 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCcccc--------EEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHH
Confidence 45666766667888887755444432 2355777788889999999999999999987766555555443444
Q ss_pred hHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhh
Q 013661 317 YASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIV 371 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~ 371 (438)
...++.+.|+. |..+.+. |+-||++...-.|++.||-++
T Consensus 127 v~~el~~~gl~------------~E~~gg~----v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 127 VKQELQEYGLV------------PEEWGGD----VIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred HHHHHHHcCCC------------HhhcCCc----eEEEEeeccCCCCHHHHHHHH
Confidence 44444554441 2222222 788888866667888877654
No 257
>PRK10927 essential cell division protein FtsN; Provisional
Probab=36.21 E-value=2.4e+02 Score=27.85 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=43.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE--------EecCCCChHHHHHhHhhhhhcCCe-EEEEecc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR--------IVSAHRTPDLMFSYASSAHERGIE-IIIAGAG 334 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~--------v~s~hr~~~~~~~~~~~~~~~g~~-v~i~~ag 334 (438)
+...|=.||-++...++.+...|...||+-.++ +++..-+.+++...+..++..|+. |++..+|
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~~a~g 318 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAG 318 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceeeccCC
Confidence 445577888888888888888888888773322 135555666666677777777766 5554444
No 258
>PRK14688 hypothetical protein; Provisional
Probab=36.11 E-value=1.2e+02 Score=25.55 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
-++.|.+.++.-|| + +...+|++..+++.+.|+||-.|.+.
T Consensus 12 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVK~R~~~ 60 (121)
T PRK14688 12 GEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRL 60 (121)
T ss_pred HHHHHHHHHHHCCCEEEEEEeeCCCCcEeEEEeeCCEEEEEEEEecCCC
Confidence 45677777777765 2 45779999887788999999999864
No 259
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=36.07 E-value=4e+02 Score=25.62 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=49.9
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChHHH
Q 013661 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLM 314 (438)
Q Consensus 236 ~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~-~G~~~~~~v~s~hr~~~~~ 314 (438)
..+++.+|.|-.=-.+-+.+.+. +...++++ + .+.+.++++++.++. .|+.+++..+..-. |+.+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~----------~g~~liLv-a--R~~~kL~~la~~l~~~~~v~v~vi~~DLs~-~~~~ 71 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLAR----------RGYNLILV-A--RREDKLEALAKELEDKTGVEVEVIPADLSD-PEAL 71 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHH----------CCCEEEEE-e--CcHHHHHHHHHHHHHhhCceEEEEECcCCC-hhHH
Confidence 35677777766644444444443 12344333 2 567888888888764 56666655544333 4555
Q ss_pred HHhHhhhhhc--CCeEEEEecc
Q 013661 315 FSYASSAHER--GIEIIIAGAG 334 (438)
Q Consensus 315 ~~~~~~~~~~--g~~v~i~~ag 334 (438)
.+...+.++. .++++|-.||
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCC
Confidence 6655555555 4667777775
No 260
>PLN02754 chorismate synthase
Probab=36.05 E-value=1.2e+02 Score=31.06 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCceEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 348 PLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 348 ~~pVi~~p~~--~~~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
..-+.|||+. +..++.+|+.|+.+-|. || |--|.|+.++.+|
T Consensus 238 ev~~~gvP~GLG~pvfdkLda~LA~Al~S--IpAVKGVEfG~GF~~a 282 (413)
T PLN02754 238 TCIVRNVPRGLGSPVFDKLEAELAKAMMS--LPATKGFEIGSGFAGT 282 (413)
T ss_pred EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEEccchhhh
Confidence 3456677775 34578999999877773 33 4488888777644
No 261
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=35.96 E-value=3.5e+02 Score=24.91 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=25.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~ 305 (438)
..|.|++|+-.+=--..-++++|...|+.+++-..
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~ 84 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLL 84 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEe
Confidence 45778888777777777778888888866655543
No 262
>PRK12361 hypothetical protein; Provisional
Probab=35.95 E-value=2.6e+02 Score=29.87 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC--CCCceEecc
Q 013661 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVP 355 (438)
Q Consensus 278 gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVi~~p 355 (438)
|+.......+++.+.|++. +++++......++ ..++.+++.+.+.+++|+ +|+.+.+-.++.+. +..|+--+|
T Consensus 254 G~g~~~~~~~~i~~~L~~~-~~~~v~~t~~~~~---a~~la~~~~~~~~d~Viv-~GGDGTl~ev~~~l~~~~~~lgiiP 328 (547)
T PRK12361 254 GGGKWQEYGEQIQRELKAY-FDLTVKLTTPEIS---AEALAKQARKAGADIVIA-CGGDGTVTEVASELVNTDITLGIIP 328 (547)
T ss_pred CCCcHHHHHHHHHHHHhcC-CceEEEECCCCcc---HHHHHHHHHhcCCCEEEE-ECCCcHHHHHHHHHhcCCCCEEEec
Confidence 4434456677887788774 6665554433333 445555555667777665 45666666665443 333433457
Q ss_pred CCC
Q 013661 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
.++
T Consensus 329 ~GT 331 (547)
T PRK12361 329 LGT 331 (547)
T ss_pred CCc
Confidence 653
No 263
>PRK13055 putative lipid kinase; Reviewed
Probab=35.66 E-value=1e+02 Score=30.49 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=45.4
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCC---CCceEe
Q 013661 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART---PLPVIG 353 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~---~~pVi~ 353 (438)
+|+.+......++.+.|.+.|++++.....-+ +....++.+++...+++++|++ |+.+.+-.++.+.. ..|.++
T Consensus 13 sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~evvngl~~~~~~~~Lg 89 (334)
T PRK13055 13 SGQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLIIAA-GGDGTINEVVNGIAPLEKRPKMA 89 (334)
T ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEEEE-CCCCHHHHHHHHHhhcCCCCcEE
Confidence 34444456677888899999998765443322 2223445555555677876654 56665555554432 234455
Q ss_pred -ccCCC
Q 013661 354 -VPVRA 358 (438)
Q Consensus 354 -~p~~~ 358 (438)
+|..+
T Consensus 90 iiP~GT 95 (334)
T PRK13055 90 IIPAGT 95 (334)
T ss_pred EECCCc
Confidence 57653
No 264
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=35.39 E-value=39 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=18.6
Q ss_pred EEEEcCCHHHHHHHHHHHhhc
Q 013661 239 ITIVGSSMGLVESRLNSLLKE 259 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~ 259 (438)
+...|+|.+||+..++.++..
T Consensus 24 ~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 24 CFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp CEEEESSHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHH
Confidence 668999999999999998863
No 265
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=35.07 E-value=2.7e+02 Score=24.72 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=41.1
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
|.+..+|.+|+.+.+...++ +|+-...+-+.++++.+.++..+..+..-+++ -=+++.+.+|.
T Consensus 83 I~VEv~~~ee~~ea~~~g~d----------------~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SG-GI~~~ni~~ya 145 (169)
T PF01729_consen 83 IEVEVENLEEAEEALEAGAD----------------IIMLDNMSPEDLKEAVEELRELNPRVKIEASG-GITLENIAEYA 145 (169)
T ss_dssp EEEEESSHHHHHHHHHTT-S----------------EEEEES-CHHHHHHHHHHHHHHTTTSEEEEES-SSSTTTHHHHH
T ss_pred EEEEcCCHHHHHHHHHhCCC----------------EEEecCcCHHHHHHHHHHHhhcCCcEEEEEEC-CCCHHHHHHHH
Confidence 66667777776654442211 44545556677777777777777665555544 45556566665
Q ss_pred hhhhhcCCeEEEE
Q 013661 319 SSAHERGIEIIIA 331 (438)
Q Consensus 319 ~~~~~~g~~v~i~ 331 (438)
+.|++++.+
T Consensus 146 ----~~gvD~isv 154 (169)
T PF01729_consen 146 ----KTGVDVISV 154 (169)
T ss_dssp ----HTT-SEEEE
T ss_pred ----hcCCCEEEc
Confidence 336665554
No 266
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=34.83 E-value=1.1e+02 Score=25.58 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
-++.|.+.++.-|| + ....+|++..+++.+.|+||-.|.+.
T Consensus 12 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T TIGR00252 12 GESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGG 60 (119)
T ss_pred HHHHHHHHHHHCCCEEeEEEecCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 45677777777765 2 45679999887788999999999763
No 267
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=34.78 E-value=56 Score=31.78 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=56.5
Q ss_pred CCeEEEEEccCCC-----HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCe-EEEEecc---ccCccc
Q 013661 270 LPRIGIIMGSDSD-----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAG---GAAHLP 340 (438)
Q Consensus 270 ~~~v~ii~gs~sD-----~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~-v~i~~ag---~~~~l~ 340 (438)
+.+|++++|+.|. +.....+.+.|++.|+++..- ..+. .+ ++..+.+...+ ||.+.-| ..+.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~--~~~~-~~----~~~~l~~~~~d~vf~~lhG~~ge~~~i~ 75 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGV--DASG-KE----LVAKLLELKPDKCFVALHGEDGENGRVS 75 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEE--cCCc-hh----HHHHhhccCCCEEEEeCCCCCCCChHHH
Confidence 4578899998775 456778889999999985433 2232 11 22223333455 6666543 345677
Q ss_pred ccccCCCCCceEeccCCCCCCCChhhHHHhhhC-CCCCceE
Q 013661 341 GMVAARTPLPVIGVPVRASALDGLDSLLSIVQM-PRGVPVA 380 (438)
Q Consensus 341 ~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~-~~g~p~~ 380 (438)
+++. ....|++|+.+....+ .+|-.++..-+ ..|||+.
T Consensus 76 ~~le-~~gip~~Gs~~~a~~l-~~DK~~~k~~l~~~gIptp 114 (296)
T PRK14569 76 ALLE-MLEIKHTSSSMKSSVI-TMDKMISKEILMHHRMPTP 114 (296)
T ss_pred HHHH-HcCCCeeCCCHHHHHH-HHCHHHHHHHHHHCCCCCC
Confidence 7654 3457887765432111 22222322222 6677776
No 268
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=34.58 E-value=1.3e+02 Score=26.54 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=34.3
Q ss_pred CeEEEEEccCCCHHH----HHHHHHHHHHcCCc---E-EEEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 271 PRIGIIMGSDSDLPV----MKDAAKILTMFSVP---H-EVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~----~~~~~~~l~~~G~~---~-~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.+++|+.+. .+... ++.+.+.|+..|++ + ..+|-++.-.|-....++ +...++.+|+
T Consensus 11 ~riaIV~sr-fn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~---~~~~yDaiIa 75 (158)
T PRK12419 11 QRIAFIQAR-WHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLA---KTGRYAAIVA 75 (158)
T ss_pred CEEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHH---hcCCCCEEEE
Confidence 467677643 33333 45566788999975 3 356667777776544444 3334776665
No 269
>PRK13337 putative lipid kinase; Reviewed
Probab=34.48 E-value=1.3e+02 Score=29.30 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=44.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC---CCCceEe-
Q 013661 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR---TPLPVIG- 353 (438)
Q Consensus 278 gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~---~~~pVi~- 353 (438)
|+........++.+.|.+.|++++.......++ ..++.+++.+.+.+++++ .|+.+.+-.++.+. ...|.++
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~---a~~~a~~~~~~~~d~vvv-~GGDGTl~~vv~gl~~~~~~~~lgi 88 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATTGPGD---ATLAAERAVERKFDLVIA-AGGDGTLNEVVNGIAEKENRPKLGI 88 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEecCCCC---HHHHHHHHHhcCCCEEEE-EcCCCHHHHHHHHHhhCCCCCcEEE
Confidence 333334566677888999999977665444443 444555555667776554 45666666665442 2234454
Q ss_pred ccCC
Q 013661 354 VPVR 357 (438)
Q Consensus 354 ~p~~ 357 (438)
+|.+
T Consensus 89 iP~G 92 (304)
T PRK13337 89 IPVG 92 (304)
T ss_pred ECCc
Confidence 4665
No 270
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=34.45 E-value=96 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEec
Q 013661 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 354 (438)
+..+.+.|++.||++.-- -+.+ ...++++++ ++|...++.|+=...+..|||+-
T Consensus 10 Ls~v~~~L~~~GyeVv~l-~~~~-------------~~~~~daiV-vtG~~~n~mg~~d~~~~~pVInA 63 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDL-ENEQ-------------DLQNVDAIV-VTGQDTNMMGIQDTSTKVPVINA 63 (80)
T ss_pred chHHHHHHHHCCCEEEec-CCcc-------------ccCCcCEEE-EECCCcccccccccccCceEEec
Confidence 456777889999884321 0101 123566655 45677777776555777888884
No 271
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=34.29 E-value=1.3e+02 Score=28.81 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE---------ecC----CCC
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI---------VSA----HRT 310 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v---------~s~----hr~ 310 (438)
.|.++|++.+.+...+-- -..+-+.|+. ...+..+.|.+.|+++-..+ .+- -|+
T Consensus 91 ~s~e~av~nA~rl~ke~G---------adaVKlEGg~----~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~ 157 (261)
T PF02548_consen 91 ASPEQAVRNAGRLMKEAG---------ADAVKLEGGA----EIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKT 157 (261)
T ss_dssp SSHHHHHHHHHHHHHTTT----------SEEEEEBSG----GGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTS
T ss_pred CCHHHHHHHHHHHHHhcC---------CCEEEeccch----hHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecC
Confidence 689999999999887421 2233667764 45667788899999988776 111 145
Q ss_pred hHHHHHhHh---hhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 311 PDLMFSYAS---SAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 311 ~~~~~~~~~---~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
.+.-.++++ .+++.|+-.++.- .....|...|......|+||+=.
T Consensus 158 ~~~a~~l~~~A~ale~AGaf~ivlE-~vp~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 158 AEEAEKLLEDAKALEEAGAFAIVLE-CVPAELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEE-SBBHHHHHHHHHHSSS-EEEESS
T ss_pred HHHHHHHHHHHHHHHHcCccEEeee-cCHHHHHHHHHHhCCCCEEecCC
Confidence 555555554 4567676644432 25667888888899999999854
No 272
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=34.03 E-value=64 Score=29.62 Aligned_cols=40 Identities=38% Similarity=0.571 Sum_probs=19.0
Q ss_pred cccccc--CCCCCceEeccCCC-CCCCChhhHHHhhhCCCCCceEEEE
Q 013661 339 LPGMVA--ARTPLPVIGVPVRA-SALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 339 l~~~i~--~~~~~pVi~~p~~~-~~~~g~~~l~s~~~~~~g~p~~tv~ 383 (438)
|-.++. +..+..|||+|++. ....--+.|++ .++|+.|+.
T Consensus 135 ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~-----~~vP~I~~~ 177 (198)
T PF02570_consen 135 LLELIEEGGVRPALVIGVPVGFVGAAESKEALMQ-----SGVPYITVR 177 (198)
T ss_dssp HHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHH-----STS-EEEES
T ss_pred HHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHh-----CCCCEEEEe
Confidence 344443 45678899999962 11112233332 399999875
No 273
>PRK12463 chorismate synthase; Reviewed
Probab=33.91 E-value=1.6e+02 Score=29.99 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCC--CCC-CC-ChhhHHHhhhCCCCCc-eEEEEeCC
Q 013661 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASA-LD-GLDSLLSIVQMPRGVP-VATVAINN 386 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~-~~-g~~~l~s~~~~~~g~p-~~tv~~~~ 386 (438)
+++.+.+.++++.|- .|.|++ ..-+.|||+. +.. +| .+|+.|+.+-|. || |--|.|+.
T Consensus 200 ~~m~~~I~~ak~~gD-----------SlGGiv----ev~~~gvP~GLGspv~fd~kLda~LA~A~ms--IpAVKgVE~G~ 262 (390)
T PRK12463 200 QEMMDAIDNAKSSGD-----------SIGGIV----EVIAEGMPIGVGSYVHYDRKLDAKLAGAIMS--INAFKGAEIGV 262 (390)
T ss_pred HHHHHHHHHHHHhCC-----------CCceEE----EEEEECCCCCCCCCccccccchHHHHHHhcC--cCceeEEEEcc
Confidence 345556666655442 344443 3446677775 222 66 899999887773 33 44888887
Q ss_pred cchHH
Q 013661 387 ATNAG 391 (438)
Q Consensus 387 ~~~Aa 391 (438)
++.+|
T Consensus 263 Gf~~a 267 (390)
T PRK12463 263 GFEAA 267 (390)
T ss_pred chhhh
Confidence 77644
No 274
>PRK09526 lacI lac repressor; Reviewed
Probab=33.82 E-value=4.4e+02 Score=25.42 Aligned_cols=86 Identities=6% Similarity=-0.037 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++..+|..+++.++.+.+. ..++.+.++++..+.++ ...+..+.+.+.+.|+.+.... +.+..++...+
T Consensus 33 s~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~-~~~~~~~~~~~ 111 (342)
T PRK09526 33 SAKTREKVEAAMAELNYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISM-VERSGVEACQA 111 (342)
T ss_pred CHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHH
Confidence 46677777777777665320 01123467777654332 2345556677788998876542 22233455556
Q ss_pred hHhhhhhcCCeEEEEe
Q 013661 317 YASSAHERGIEIIIAG 332 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~ 332 (438)
+++.+.+.+++-+|..
T Consensus 112 ~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 112 AVNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 7777777888865553
No 275
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.72 E-value=1.3e+02 Score=27.88 Aligned_cols=9 Identities=33% Similarity=0.700 Sum_probs=3.7
Q ss_pred hhhcCCeEE
Q 013661 321 AHERGIEII 329 (438)
Q Consensus 321 ~~~~g~~v~ 329 (438)
+.+.|++++
T Consensus 76 ~~~~~ipvV 84 (273)
T cd06305 76 ALDAGIPVV 84 (273)
T ss_pred HHHcCCCEE
Confidence 334444433
No 276
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=33.67 E-value=1.3e+02 Score=27.75 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=51.5
Q ss_pred EcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEcc-----------CCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 013661 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS-----------DSDLPVMKDAAKILTMFSVPHEVRIVSAHRT 310 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs-----------~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~ 310 (438)
.|.+.++-++.+..+...+.. ...+++|+++||+ |.-+...+.++..++..|+++.=. |-.
T Consensus 113 Eg~ti~dk~ri~~laaeflrr----~~~ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~----~IL 184 (256)
T COG4002 113 EGKTIKDKIRIIELAAEFLRR----TGIEPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHY----GIL 184 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHH----hCCCcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEe----eeE
Confidence 466777777777777665442 2246889999885 333456678888888888875422 221
Q ss_pred hHHHHHhHhhhhhcCCeEEEEeccccCc
Q 013661 311 PDLMFSYASSAHERGIEIIIAGAGGAAH 338 (438)
Q Consensus 311 ~~~~~~~~~~~~~~g~~v~i~~ag~~~~ 338 (438)
.++++ +.| +|+|++-|-..+
T Consensus 185 ---IEeal----kdg-nvIia~dGItGN 204 (256)
T COG4002 185 ---IEEAL----KDG-NVIIAVDGITGN 204 (256)
T ss_pred ---HHHHh----hcC-CEEEEecCccch
Confidence 34444 345 788888764433
No 277
>PRK11175 universal stress protein UspE; Provisional
Probab=33.63 E-value=1.5e+02 Score=28.43 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccc--------ccCCCCCceEeccC
Q 013661 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM--------VAARTPLPVIGVPV 356 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~--------i~~~~~~pVi~~p~ 356 (438)
++++.+.++..|++++..+.. ++.|. ..+++.+++++++.+|.++-+...+.+. +..++..||+-+|.
T Consensus 71 l~~~~~~~~~~~~~~~~~v~~-~g~~~--~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~ 146 (305)
T PRK11175 71 IREQAKPYLDAGIPIEIKVVW-HNRPF--EAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKD 146 (305)
T ss_pred HHHHHHHHhhcCCceEEEEec-CCCcH--HHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecc
Confidence 444444455567776655442 34442 2334444566777777666333333322 23456677777775
No 278
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=33.54 E-value=3e+02 Score=25.06 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=50.0
Q ss_pred CCeEEEE-EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 270 LPRIGII-MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 270 ~~~v~ii-~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
.+++++| +++..+........+.++++|+..........-+.+...+.+ . .++++....|-...+...+..
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l---~--~ad~I~~~GG~~~~~~~~l~~--- 100 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL---L--EADGIFVGGGNQLRLLSVLRE--- 100 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH---h--hCCEEEEcCCcHHHHHHHHHh---
Confidence 4667676 444444566778888999999986544322111223334444 2 366666665655566555543
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceE
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVA 380 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~ 380 (438)
..+.+.+++.++ .|.|++
T Consensus 101 ------------t~~~~~i~~~~~--~G~v~~ 118 (210)
T cd03129 101 ------------TPLLDAILKRVA--RGVVIG 118 (210)
T ss_pred ------------CChHHHHHHHHH--cCCeEE
Confidence 125566666666 565554
No 279
>PRK14682 hypothetical protein; Provisional
Probab=33.42 E-value=1.5e+02 Score=24.71 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCc-------c--eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 112 LATDVAHKAVSSLEG-------A--GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~--G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + +...+|++..+++.+.|+||-.|.+.
T Consensus 9 ~gE~~A~~~L~~~Gy~Il~rN~r~~~~GEIDiIa~~~~~lvFVEVKtR~~~ 59 (117)
T PRK14682 9 KAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKT 59 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeeEECCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 345677777777765 3 35669999887788999999999874
No 280
>PRK14684 hypothetical protein; Provisional
Probab=32.39 E-value=1.4e+02 Score=25.06 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + ....+|++..+++.+.|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (120)
T PRK14684 11 NAEKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFS 60 (120)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCCCCeEEEEEEeCCEEEEEEEeEcCCC
Confidence 345677777777775 2 45779999887788999999999863
No 281
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=32.18 E-value=1.5e+02 Score=29.05 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=40.2
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC-----ChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC-C
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR-----TPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-R 346 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr-----~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-~ 346 (438)
.++++|..-|..........+-..+..++..+.+... +...+.++.+.+.+...+++++.......+++.+++ .
T Consensus 31 ~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~ 110 (363)
T cd03786 31 VLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFK 110 (363)
T ss_pred EEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH
Confidence 3466776666555555554442334445555433211 111222233334455567666653334455555443 3
Q ss_pred CCCceEecc
Q 013661 347 TPLPVIGVP 355 (438)
Q Consensus 347 ~~~pVi~~p 355 (438)
...||+.+.
T Consensus 111 ~~iPvv~~~ 119 (363)
T cd03786 111 LGIPVAHVE 119 (363)
T ss_pred cCCCEEEEe
Confidence 566887654
No 282
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.09 E-value=1.5e+02 Score=28.53 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 291 KILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 291 ~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
+.++.+|..+.+.+...+..+++-.+.++.+..++++-+|
T Consensus 23 ~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgii 62 (303)
T cd01539 23 DIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLA 62 (303)
T ss_pred HHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3344433333344434455555444444444444555433
No 283
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=31.99 E-value=5e+02 Score=25.45 Aligned_cols=136 Identities=11% Similarity=0.165 Sum_probs=75.7
Q ss_pred HHHHHHHHhhCCcEEEEecCCC-----C-CCcCeEEeCCHHHHHHHHHH--------------hcC-------CCCcEEE
Q 013661 7 ESARRAGKQFGYPLMVKSKRLA-----Y-DGRGNAVAKSEEELSSAITA--------------LGG-------FDRGLYV 59 (438)
Q Consensus 7 ee~~~~~~~igyPvvvKP~~~g-----~-gg~Gv~~v~~~~el~~~~~~--------------~~~-------~~~~~lv 59 (438)
+++.++.+++|--|+.|=...+ + ...+...|++..|+--.+.. ..+ .+-.+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 3577788899988999964311 0 11233578888886655442 101 1245677
Q ss_pred eeccCC--CeEEEEEEEEcCCCeEEEEeeeeeEEecCeEEEEEeCCC--CCHHHHHHHHHHH-HHHHHhcCcceEEEEEE
Q 013661 60 EKWAPF--VKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAA--VPWKISELATDVA-HKAVSSLEGAGIFAVEL 134 (438)
Q Consensus 60 Ee~I~g--~~e~sv~~~~d~~G~~~~~~~~e~~~~~g~~~~~~~p~~--l~~~~~~~i~~~a-~~i~~~lg~~G~~~ve~ 134 (438)
-+|..- ..|+.+-+. +++++...-. .- .+.+.- ..++++..|.+.. ..+...+.. .-+-+|+
T Consensus 155 rkw~~l~p~~EFRcFV~---~~~LiaISQr-----~~----~~~~~L~~~~~~I~~~I~~F~~~~I~~~~~~-~~~v~DV 221 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR---NRKLIAISQR-----DL----NYYDFLEELKEEIRSKIQEFFEEHIKPKFPL-DNYVFDV 221 (299)
T ss_pred eccccCCccceEEEEEE---CCEEEEEecc-----cc----cccHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEE
Confidence 888763 356666553 4455433321 10 112211 2234444444444 223344433 4466899
Q ss_pred EEeCC-CcEEEEEEcCCCCCCC
Q 013661 135 FWTNN-GQILLNEVAPRPHNSG 155 (438)
Q Consensus 135 ~~~~~-g~~~viEiNpR~~~sg 155 (438)
.++.+ ++++++|+||-...++
T Consensus 222 yi~~~~~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 222 YITRDKDKVWLIDFNPFGPRTD 243 (299)
T ss_pred EEcCCCCeEEEEEecCCcccCc
Confidence 99887 7899999999876443
No 284
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=31.99 E-value=3.3e+02 Score=25.90 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 301 ~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+-++|.-|..+++.+.++.++++|++++....
T Consensus 178 v~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 178 LLLAISYSGERRELNLAADEALRVGAKVLAITG 210 (278)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcC
Confidence 344556666666677777778888888665443
No 285
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.96 E-value=3.6e+02 Score=24.91 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHhhc-CCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC------------
Q 013661 243 GSSMGLVESRLNSLLKE-DSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR------------ 309 (438)
Q Consensus 243 G~~~~eA~~ka~~a~~~-i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr------------ 309 (438)
|.+.+..+..+..+.+. .+. .-++.+|-|-..+.+.++.+++.++.++.+ ...+...|.
T Consensus 110 G~~~~~il~nl~~l~~~g~~v-------~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~ 181 (213)
T PRK10076 110 KMNLPRVLENLRLLVSEGVNV-------IPRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKT 181 (213)
T ss_pred CCCHHHHHHHHHHHHhCCCcE-------EEEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCc
Confidence 45566666666655542 111 123446666555678899999999988865 455556665
Q ss_pred ---------ChHHHHHhHhhhhhcCCeEEE
Q 013661 310 ---------TPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 310 ---------~~~~~~~~~~~~~~~g~~v~i 330 (438)
+++.+.++.+-+++.|+++.|
T Consensus 182 y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 182 WSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 234444455456677888765
No 286
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.93 E-value=1.9e+02 Score=27.16 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCC---ChHHHHHhHhhhhhcCCe
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHR---TPDLMFSYASSAHERGIE 327 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr---~~~~~~~~~~~~~~~g~~ 327 (438)
+.+.+.++.+.+++.|+++.+.+..+.| +|+.+.++++.+.+.|++
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3455555556666666665555543342 455555555555555555
No 287
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.92 E-value=6e+02 Score=26.39 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=36.5
Q ss_pred CCCCCCChhhHHHhhhCCCCCceEEEEeC------CcchHHHHHHHHHcCCChH-HHHHHHHHH
Q 013661 357 RASALDGLDSLLSIVQMPRGVPVATVAIN------NATNAGLLAVRMLGFGDAD-LRARMQQYM 413 (438)
Q Consensus 357 ~~~~~~g~~~l~s~~~~~~g~p~~tv~~~------~~~~Aa~~a~~il~~~~~~-~~~~l~~~~ 413 (438)
++...+|-. ||..+.. |.|+-=++.+ ..+.+--+|-|||+++|-. +-++.++.-
T Consensus 250 DGdaRGGaA--LS~~~~t-g~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~ 310 (451)
T COG0541 250 DGDARGGAA--LSARAIT-GKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVV 310 (451)
T ss_pred cCCCcchHH--HhhHHHH-CCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhh
Confidence 355555655 7776664 6677766655 3788999999999999743 435555543
No 288
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.88 E-value=2.2e+02 Score=21.23 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=25.2
Q ss_pred HcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 295 MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 295 ~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
.++=+--+-++|..+...++.+.++.++++|++++.
T Consensus 44 ~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 44 LLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred cCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 333334455567777777789999899999988654
No 289
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=31.77 E-value=53 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=19.0
Q ss_pred EEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 129 IFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 129 ~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
++.+|+..+++|+++|+|.|.|..+
T Consensus 70 ~~g~Dl~r~~dG~w~VleDn~~~Ps 94 (330)
T PF04174_consen 70 FYGADLVRDPDGRWRVLEDNTRAPS 94 (330)
T ss_dssp EEEEEEEE-SSS-EEEEEEE-SS--
T ss_pred EEEEeeeECCCCCEEEEEecCCCCc
Confidence 7889999999999999999999974
No 290
>PRK09492 treR trehalose repressor; Provisional
Probab=31.53 E-value=4.6e+02 Score=24.93 Aligned_cols=84 Identities=8% Similarity=0.076 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~s---D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
+|..+|..+++.++.+.+. ...+.+.|+++....+ ....+..+.+.+.+.|+.+.. .+....++...++
T Consensus 33 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~--~~~~~~~~~~~~~ 110 (315)
T PRK09492 33 EETRERVEAVINQHGFSPSKSARAMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPII--MESQFSPEKVNEH 110 (315)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEE--EecCCChHHHHHH
Confidence 5667777777766654310 0012245777764322 334566677788889987543 3445667766677
Q ss_pred HhhhhhcCCeEEEEe
Q 013661 318 ASSAHERGIEIIIAG 332 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ 332 (438)
++.+...+++-+|..
T Consensus 111 ~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 111 LGVLKRRNVDGVILF 125 (315)
T ss_pred HHHHHhcCCCEEEEe
Confidence 777777788866554
No 291
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=31.41 E-value=4.5e+02 Score=24.72 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=56.5
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCC-----ccccC--CCC-eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSD-----CQFKT--VLP-RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT 310 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~-----~~~~~--~~~-~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~ 310 (438)
|-..+.|.++....+..+......+ |+.++ +.+ .-.++ .|.+.+.++.+.+++.+.++.+.+- ++.+
T Consensus 72 vnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll----~dp~~l~~iv~av~~~~~PVsvKiR-~~~~ 146 (231)
T TIGR00736 72 VNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELL----KNKELLKEFLTKMKELNKPIFVKIR-GNCI 146 (231)
T ss_pred EEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhc----CCHHHHHHHHHHHHcCCCcEEEEeC-CCCC
Confidence 4445679999888888776543332 11110 011 11121 4888899999998888999888853 3444
Q ss_pred hHHHHHhHhhhhhcCCeEEEE
Q 013661 311 PDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 311 ~~~~~~~~~~~~~~g~~v~i~ 331 (438)
...+.++.+.+++.|+..+.+
T Consensus 147 ~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 147 PLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred cchHHHHHHHHHHcCCCEEEE
Confidence 455777888888889986654
No 292
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=31.06 E-value=2e+02 Score=28.19 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=49.5
Q ss_pred CCcEEEEeccccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEcc---CCCHHHHHHHHHHHH
Q 013661 218 PGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS---DSDLPVMKDAAKILT 294 (438)
Q Consensus 218 p~~~~~~~~~~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs---~sD~~~~~~~~~~l~ 294 (438)
++..+..|. |. ++.+.+--...+.+..+++=.....+.. ....++||.|+ ......++.+.+.++
T Consensus 169 ~~~~v~~~d-P~----~~~~~~e~~~~~~~~~l~~R~~~i~ka~-------~a~~~GIiv~tl~~q~~~~~~~~l~~~l~ 236 (307)
T PF01866_consen 169 PGKPVYRYD-PY----SKTLSVEDISYDIERLLRRRYALIEKAK-------DAKTFGIIVGTLGGQGYLELIKRLKKLLK 236 (307)
T ss_dssp H-SEEEEE--TT------T--EEE----THHHHHHHHHHHHHHT-------T--EEEEEEE-STTT--HHHHHHHHHHHH
T ss_pred cCCCEEEeC-CC----cccceeecccccHHHHHHHHHHHHHHHh-------cCCEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 555555543 32 2234444334555555555444444332 23677888874 667788888899999
Q ss_pred HcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 295 MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 295 ~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+.|-+++.-+.+ +=+|+++..|. +++++|..|
T Consensus 237 ~~gkk~y~~~~~-~i~~~kL~nf~------eid~fV~~a 268 (307)
T PF01866_consen 237 KAGKKSYTLSVG-EINPAKLANFP------EIDAFVQIA 268 (307)
T ss_dssp HTT-EEEEEEES-S--GGGGTTS---------SEEEE-S
T ss_pred HcCCEEEEEEEC-CCCHHHHhcCc------ccCEEEEec
Confidence 999997776665 77888877764 477777554
No 293
>PRK12497 hypothetical protein; Reviewed
Probab=31.03 E-value=1.4e+02 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-+++|.+.++..|| + ....+|++..+++.++|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T PRK12497 11 AGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSD 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEEcceecCCCCcEeeeEEeCCEEEEEEEEeccCC
Confidence 346677777777775 2 34679999876778999999999864
No 294
>PRK06455 riboflavin synthase; Provisional
Probab=31.02 E-value=3.7e+02 Score=23.65 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=55.2
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcC--CcE-EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFS--VPH-EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G--~~~-~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
+++|+...-.+..-+..+.+.|+++| .++ ..+|-++.-.|-....++ +..+++.+|+.. +
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~---~~~~yDaVIaLG--------~------ 65 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLI---EEEGCDIVMALG--------M------ 65 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHH---hcCCCCEEEEec--------c------
Confidence 45666655555556778889999966 444 345555666665544444 445677777542 1
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCC
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~ 386 (438)
|+.++...-.-+....=|..+|+..|+|++.|.+..
T Consensus 66 --VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v~vhe 101 (155)
T PRK06455 66 --PGPTEKDKYCAHEASIGLIMAQLMTNKHIIEVFVHE 101 (155)
T ss_pred --eeccCcchhHHHHHHHHHHHHHhhhCCCEEEEEecc
Confidence 122222110001112226789999999999777654
No 295
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=30.90 E-value=2.8e+02 Score=22.87 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=36.2
Q ss_pred CeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh
Q 013661 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 271 ~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~ 323 (438)
+.+.|..|.+. .........+.++++|+.++....+..-+.+++.+.++++.+
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34445555443 344566667888999999999988888898888888877643
No 296
>PLN02204 diacylglycerol kinase
Probab=30.72 E-value=5.5e+02 Score=27.89 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=52.8
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEE----EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChH
Q 013661 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGII----MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPD 312 (438)
Q Consensus 237 G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii----~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~ 312 (438)
..+...-.+...+..=.++....+... ....+++.++ +|..+.....+.+...|+..|+++++.+.-..++..
T Consensus 129 ~~~~f~~~d~~~~~~w~~~l~~~l~~~---~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~ 205 (601)
T PLN02204 129 AVYTFGHKDLQTCQSWVDRLNASLNKE---VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAF 205 (601)
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHhhc---cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHH
Confidence 344444466666666666665554321 1122344344 344555667778899999999998877665444433
Q ss_pred HHHHhHhhhhhcCCeEEEEec
Q 013661 313 LMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 313 ~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+.+-+.+.+..+++.+|++.
T Consensus 206 d~~~~~~~~~l~~~D~VVaVG 226 (601)
T PLN02204 206 DVMASISNKELKSYDGVIAVG 226 (601)
T ss_pred HHHHHHhhhhccCCCEEEEEc
Confidence 333222222345788777665
No 297
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.38 E-value=1.6e+02 Score=29.03 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=48.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc-----EEEEEecCCCChH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVP-----HEVRIVSAHRTPD 312 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~-----~~~~v~s~hr~~~ 312 (438)
.++++|.|..-=++-++..+.. ...| ++. . .|.+..+++.+.+.+-.-+ +.+...| ++
T Consensus 37 ~~vVTGansGIG~eta~~La~~----------Ga~V-v~~-~-R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss----l~ 99 (314)
T KOG1208|consen 37 VALVTGATSGIGFETARELALR----------GAHV-VLA-C-RNEERGEEAKEQIQKGKANQKIRVIQLDLSS----LK 99 (314)
T ss_pred EEEEECCCCchHHHHHHHHHhC----------CCEE-EEE-e-CCHHHHHHHHHHHHhcCCCCceEEEECCCCC----HH
Confidence 6778888887666666655542 2233 333 2 4567888888777761111 2334333 34
Q ss_pred HHHHhHhhhh--hcCCeEEEEeccc
Q 013661 313 LMFSYASSAH--ERGIEIIIAGAGG 335 (438)
Q Consensus 313 ~~~~~~~~~~--~~g~~v~i~~ag~ 335 (438)
.+.+|...++ ....+|+|-.||.
T Consensus 100 SV~~fa~~~~~~~~~ldvLInNAGV 124 (314)
T KOG1208|consen 100 SVRKFAEEFKKKEGPLDVLINNAGV 124 (314)
T ss_pred HHHHHHHHHHhcCCCccEEEeCccc
Confidence 4667776664 5567788888873
No 298
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=30.13 E-value=1.8e+02 Score=29.34 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=32.9
Q ss_pred EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-------C--CCCcEEEeeccC
Q 013661 20 LMVKSKRLAYDGRGNAVAKSEEELSSAITALG-------G--FDRGLYVEKWAP 64 (438)
Q Consensus 20 vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-------~--~~~~~lvEe~I~ 64 (438)
|+||...|. -|.||..|+|.+|+...-++-. + .-.+++|||=|.
T Consensus 260 ViVKADaGT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 260 VIVKADAGT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred EEEEcCCCC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 789997776 5799999999999987655421 1 125689998876
No 299
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.10 E-value=3e+02 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=24.7
Q ss_pred EEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 301 ~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
-+-++|..+...++.+.++.++++|++++....
T Consensus 49 ~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 49 LVIAISQSGETADTLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 455567778877888888888888988765443
No 300
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.08 E-value=2.3e+02 Score=26.04 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=18.5
Q ss_pred HHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 291 KILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 291 ~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+.++++|+.+... .....++++..+.++++-..|++.+|+.
T Consensus 22 ~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~ 62 (257)
T PF13407_consen 22 AAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVS 62 (257)
T ss_dssp HHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEec
Confidence 3444455444332 2334445544445544444455544433
No 301
>PRK10426 alpha-glucosidase; Provisional
Probab=30.07 E-value=3.5e+02 Score=29.64 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-----------
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA----------- 307 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~----------- 307 (438)
.+..|+|..+++++-....+.-+.+ | .=..-++..|-.+..+.++++++.+++.|+|+++-++.-
T Consensus 180 y~~~G~~~~~vi~~yt~ltGr~p~~---P-~Wal~G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~ 255 (635)
T PRK10426 180 RFECADTYISLLEKLTALFGRQPEL---P-DWAYDGVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK 255 (635)
T ss_pred EEEeCCCHHHHHHHHHHhhCCCCCC---C-hhhccCccccccCCHHHHHHHHHHHHHcCCCeeEEEEecccccccccccc
Confidence 4567999999999999988865432 1 111102333444445788999999999999998765421
Q ss_pred ----------CCChHHHHHhHhhhhhcCCeEEEE
Q 013661 308 ----------HRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 308 ----------hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.|=|+ ..++++++++.|++++.-
T Consensus 256 ~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~ 288 (635)
T PRK10426 256 RLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGY 288 (635)
T ss_pred cccccceEChhhCCC-HHHHHHHHHHCCCEEEEE
Confidence 12233 456777778899996643
No 302
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=30.00 E-value=2.3e+02 Score=28.00 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=53.3
Q ss_pred CCeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEec------CCCCh-HHHHHhHhhhhhcCCeEEEEeccc--cCc
Q 013661 270 LPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVS------AHRTP-DLMFSYASSAHERGIEIIIAGAGG--AAH 338 (438)
Q Consensus 270 ~~~v~ii~gs~s--D~~~~~~~~~~l~~~G~~~~~~v~s------~hr~~-~~~~~~~~~~~~~g~~v~i~~ag~--~~~ 338 (438)
...+.||+-|.+ +...++.+.+.|+.+|+++...=.. .-+++ ++..++..-+....++++.+.-|+ ++.
T Consensus 10 gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~r 89 (313)
T COG1619 10 GDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNR 89 (313)
T ss_pred CCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhh
Confidence 346777755433 5778888899999999886533111 12233 556667766778888888877764 445
Q ss_pred ccccccC----CCCCceEe
Q 013661 339 LPGMVAA----RTPLPVIG 353 (438)
Q Consensus 339 l~~~i~~----~~~~pVi~ 353 (438)
|-.-+-. +..++.||
T Consensus 90 lLp~ld~~~i~~~pKifiG 108 (313)
T COG1619 90 LLPYLDYDLIRNHPKIFIG 108 (313)
T ss_pred hhhhcchHHHhcCCceEEE
Confidence 5444433 25677776
No 303
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.81 E-value=1.7e+02 Score=28.70 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=50.5
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc--ccCcccccccCCCCCceEec
Q 013661 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG--GAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag--~~~~l~~~i~~~~~~pVi~~ 354 (438)
+|-..-.....++.+.|+..|+.+..++....+ ...++.+++...+++.+|++.| .-+.+...+++ +..|.+++
T Consensus 13 sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g---~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~-~~~~~Lgi 88 (301)
T COG1597 13 SGKGKAKKLLREVEELLEEAGHELSVRVTEEAG---DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAG-TDDPPLGI 88 (301)
T ss_pred ccccchhhHHHHHHHHHHhcCCeEEEEEeecCc---cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhc-CCCCceEE
Confidence 443456778888899999999999888776443 3566777766678888877652 33334444443 34442554
Q ss_pred -cCCC
Q 013661 355 -PVRA 358 (438)
Q Consensus 355 -p~~~ 358 (438)
|..+
T Consensus 89 lP~GT 93 (301)
T COG1597 89 LPGGT 93 (301)
T ss_pred ecCCc
Confidence 6653
No 304
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=29.70 E-value=75 Score=32.73 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE--eCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV--AKSEEELSSAITALGGFDRGLYVEKWAP 64 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~--v~~~~el~~~~~~~~~~~~~~lvEe~I~ 64 (438)
+.-++++...+.++. -+||||..++ ||.|+.+ .-+.+|+.+..+++...+.+++.|+-+.
T Consensus 352 c~~~~el~~VL~~l~-~lViK~~~~~-gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~ 413 (488)
T COG2308 352 CGEPDELEHVLANLS-ELVIKPVEGS-GGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQ 413 (488)
T ss_pred cCCHHHHHHHHhchh-hheEeeeccC-CCCcceeccccCHHHHHHHHHHHHhChhhhccccccc
Confidence 445677777777664 3899998765 6666654 4677888888887766666677777665
No 305
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.35 E-value=2.1e+02 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=48.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+..=-..-+.+.+.. ...| ++. ..+.+.++++.+.++..|.++..-.+. -..++.+.++
T Consensus 9 ~vlITGAs~GIG~aia~~la~~----------G~~V-vl~--~R~~~~l~~~~~~~~~~g~~~~~~~~D-v~d~~~v~~~ 74 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARR----------GARL-VLA--ARDEEALQAVAEECRALGAEVLVVPTD-VTDADQVKAL 74 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHH
Confidence 5677777665555555544432 2344 333 245677788888888888664332222 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
.++..+ .+++++|-+||.
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 75 ATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 655433 357888888864
No 306
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=29.32 E-value=3.8e+02 Score=25.08 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=53.1
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCC-----ccccC--CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCh
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSD-----CQFKT--VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTP 311 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~-----~~~~~--~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~ 311 (438)
|-..|.|.++..+.+..+....+.+ |+.++ ..+.-..+ -.|.+.+.++.+.+++.++++.+.+-.-+ +
T Consensus 77 vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~L---l~~p~~l~eiv~avr~~~~pVsvKir~g~-~- 151 (233)
T cd02911 77 VNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEAL---LKDPERLSEFIKALKETGVPVSVKIRAGV-D- 151 (233)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHH---cCCHHHHHHHHHHHHhcCCCEEEEEcCCc-C-
Confidence 4456888888777776664432211 11110 01100001 14678888888888888999888853322 1
Q ss_pred HHHHHhHhhhhhcCCeEEEEec
Q 013661 312 DLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+.+.++.+.+++.|++.+.+-+
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~ 173 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDA 173 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECc
Confidence 3466777777888999765433
No 307
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=29.17 E-value=4.1e+02 Score=25.21 Aligned_cols=30 Identities=23% Similarity=0.146 Sum_probs=20.6
Q ss_pred CCeEEEEEc-cCCCHHHHHHHHHHHHHcCCc
Q 013661 270 LPRIGIIMG-SDSDLPVMKDAAKILTMFSVP 299 (438)
Q Consensus 270 ~~~v~ii~g-s~sD~~~~~~~~~~l~~~G~~ 299 (438)
.++|+||-. |.......+...+.|+.+|+.
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~ 58 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVK 58 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCc
Confidence 467777743 433345567777889999996
No 308
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=29.09 E-value=2.9e+02 Score=21.80 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=22.4
Q ss_pred eEEEEEccCCCHHH--HHHHHHHHHHcCCcEEEE
Q 013661 272 RIGIIMGSDSDLPV--MKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 272 ~v~ii~gs~sD~~~--~~~~~~~l~~~G~~~~~~ 303 (438)
++.+++|+----.. ..++.+.|++.|+++++.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~ 37 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELI 37 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEE
Confidence 46677765332233 477778999999998887
No 309
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=28.92 E-value=4.5e+02 Score=25.19 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCCHHHHH----HHHHHHHHcCCcEEEEEecCCCChHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSDLPVMK----DAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD~~~~~----~~~~~l~~~G~~~~~~v~s~hr~~~~~~ 315 (438)
.++..+|..+++.++.+.+. ...+...|+++....++ ++.. .+.+.+++.|+.+.. ...+..++...
T Consensus 29 s~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~~~~-~f~~~l~~~i~~~~~~~g~~~~i--~~~~~~~~~~~ 105 (329)
T TIGR01481 29 KPATRKKVLEVIKRLDYRPNAVARGLASKRTTTVGVIIPDISN-IYYAELARGIEDIATMYKYNIIL--SNSDEDPEKEV 105 (329)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHhhCCCCEEEEEeCCCCc-hhHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHH
Confidence 46777777777777665320 00123467777754333 3333 444566778876544 34566777666
Q ss_pred HhHhhhhhcCCeEEEEe
Q 013661 316 SYASSAHERGIEIIIAG 332 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~ 332 (438)
++++.+..++++-+|..
T Consensus 106 ~~~~~l~~~~vdGiIi~ 122 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFM 122 (329)
T ss_pred HHHHHHHhCCCCEEEEe
Confidence 77777777788855543
No 310
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=28.71 E-value=3.6e+02 Score=22.76 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=56.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++.+|.+..=...-++..+.. ...++++.+...+.+...+....|+..|.++..--+. -.+++.+.++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~----------g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D-~~~~~~~~~~ 70 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR----------GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD-LSDPESIRAL 70 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE-TTSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc----------CceEEEEeeeccccccccccccccccccccccccccc-cccccccccc
Confidence 4677787777666666665543 2334355444336788888888888888665544333 4567777777
Q ss_pred Hhhhh--hcCCeEEEEecccc
Q 013661 318 ASSAH--ERGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~--~~g~~v~i~~ag~~ 336 (438)
+++.. ...++++|.++|..
T Consensus 71 ~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 71 IEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHHHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccccccc
Confidence 77665 33466888888754
No 311
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=28.66 E-value=5.1e+02 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=17.5
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
+|.|++|+-.+=-...-+++.|...|+++.+-
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~ 93 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVC 93 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEE
Confidence 45555555555555555555555555554443
No 312
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.45 E-value=4.4e+02 Score=25.22 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHH-HcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc
Q 013661 282 DLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 282 D~~~~~~~~~~l~-~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
....-..+++.|. +.|++.-.+++.-+++...+.+++..+.+.|++=+.+..|
T Consensus 42 ~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~G 95 (272)
T TIGR00676 42 TRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRG 95 (272)
T ss_pred cHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3344455556665 6799987777777888888888888888888886665555
No 313
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.45 E-value=5.3e+02 Score=24.65 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=31.5
Q ss_pred EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCC
Q 013661 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 302 ~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~ 358 (438)
+-++|.-|....+.+.++.+++.|++++.......+-|.. ....+|-+|...
T Consensus 191 ~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~-----~ad~~l~~~~~~ 242 (292)
T PRK11337 191 VLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAK-----LADYVICSTAQG 242 (292)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH-----hCCEEEEcCCCC
Confidence 4455666666668888888888898866544323323332 234567777643
No 314
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=28.21 E-value=2.5e+02 Score=21.23 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=35.1
Q ss_pred EEEEEccC---CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 273 IGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 273 v~ii~gs~---sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+.|+..++ .....+..++..|...|+.++.... .+.+.+ -++.++..|++..+...
T Consensus 4 v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~--~~~~~k---~~~~a~~~g~~~~iiig 62 (94)
T cd00738 4 VAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR--ERKIGK---KFREADLRGVPFAVVVG 62 (94)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC--CcCHhH---HHHHHHhCCCCEEEEEC
Confidence 44554444 5677888888999999998776532 244433 34444677888555443
No 315
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=28.03 E-value=2.5e+02 Score=27.01 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=41.4
Q ss_pred EEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCc---EEEEEecCCCChHHHHH
Q 013661 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVP---HEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 240 i~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~---~~~~v~s~hr~~~~~~~ 316 (438)
+++|.+..--.+.+.+.+.. ..+| ++++. +.+..++....+...+.. +...++- ++..+...+
T Consensus 12 lVTG~s~GIG~aia~~la~~----------Ga~v-~i~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~~~~ 77 (270)
T KOG0725|consen 12 LVTGGSSGIGKAIALLLAKA----------GAKV-VITGR--SEERLEETAQELGGLGYTGGKVLAIVCD-VSKEVDVEK 77 (270)
T ss_pred EEECCCChHHHHHHHHHHHC----------CCEE-EEEeC--CHHHHHHHHHHHHhcCCCCCeeEEEECc-CCCHHHHHH
Confidence 34555555454444444431 2344 44433 346666666666666664 3332222 444444444
Q ss_pred hHhhh-hh--cCCeEEEEecccc
Q 013661 317 YASSA-HE--RGIEIIIAGAGGA 336 (438)
Q Consensus 317 ~~~~~-~~--~g~~v~i~~ag~~ 336 (438)
..... ++ ..+++++-.||..
T Consensus 78 l~~~~~~~~~GkidiLvnnag~~ 100 (270)
T KOG0725|consen 78 LVEFAVEKFFGKIDILVNNAGAL 100 (270)
T ss_pred HHHHHHHHhCCCCCEEEEcCCcC
Confidence 44332 33 2377888777644
No 316
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=27.93 E-value=1.2e+02 Score=28.44 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~e~sv~~~~ 75 (438)
.+++.++++|.+-.+|-+ ||+|++++ .+.++.+.+.+.+ ...++.+..+..... +.-+-++..+
T Consensus 123 ~vr~~L~~lgL~sf~KTS----G~kGlHv~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDylq 198 (228)
T cd04865 123 LVREVLDELGLRGYPKTS----GARGLHIYVPIAPRYTFEEVRRFAELLAREVERRLPDLATTERWKKERGGRVYLDYLQ 198 (228)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 456677889999999993 68999875 4556666555433 133444555555542 1245566666
Q ss_pred cCCCeEEE
Q 013661 76 GRDKSILC 83 (438)
Q Consensus 76 d~~G~~~~ 83 (438)
+..|....
T Consensus 199 N~~g~T~v 206 (228)
T cd04865 199 NARGKTLA 206 (228)
T ss_pred CCCCCeEE
Confidence 66665443
No 317
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=27.82 E-value=3.1e+02 Score=25.31 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=43.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+.+|.+-.=...-+++.+++ ...| ++. +++.+...+..+.++..|.++....+. -..++.+.++
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~ 77 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQA----------GAEV-ILN--GRDPAKLAAAAESLKGQGLSAHALAFD-VTDHDAVRAA 77 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHc----------CCEE-EEE--eCCHHHHHHHHHHHHhcCceEEEEEcc-CCCHHHHHHH
Confidence 4667776655555555554432 1234 333 234455566666666666554433222 3445556666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ ..++++|-.+|.
T Consensus 78 ~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 78 IDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 554432 246677777764
No 318
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=27.60 E-value=4.4e+02 Score=26.22 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=53.9
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHH
Q 013661 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL 313 (438)
Q Consensus 237 G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs---~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~ 313 (438)
+.+.-...+.+..+++=..+..+.. .-..++|+.|+ ......++.+.+.+++.|.++..-+.+ .=+|++
T Consensus 206 ~~~~~~~~~~~~~l~rR~~~I~ka~-------~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~-~in~~k 277 (332)
T TIGR00322 206 GEFTRIGEDAKQFVKVRALAISKAR-------KGKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLS-NVSPAK 277 (332)
T ss_pred CceeEccccHHHHHHHHHHHHHHHh-------cCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHH
Confidence 4444444556566655444444332 23567777764 557788888999999999998877766 778888
Q ss_pred HHHhHhhhhhcCCeEEEEe
Q 013661 314 MFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ 332 (438)
++.|. .+++++..
T Consensus 278 L~nf~------eiD~fV~~ 290 (332)
T TIGR00322 278 LLMFD------QIDVFVQV 290 (332)
T ss_pred HhCCC------CcCEEEEe
Confidence 77664 26666643
No 319
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=27.59 E-value=2.3e+02 Score=26.90 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=45.1
Q ss_pred eeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChHH
Q 013661 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDL 313 (438)
Q Consensus 235 ~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~-~G~~~~~~v~s~hr~~~~ 313 (438)
++.-|.+-+..+.+|.++.....+. +| ++.+.. .+.++++++.+.. .-....+. -+.++.
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~------------~v-vl~aRR--~drL~~la~~~~~~~~~~~~~D----VtD~~~ 67 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA------------KV-VLAARR--EERLEALADEIGAGAALALALD----VTDRAA 67 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC------------eE-EEEecc--HHHHHHHHHhhccCceEEEeec----cCCHHH
Confidence 3444555556677777776644332 23 555443 5667777766553 11223333 234555
Q ss_pred HHHhHhhh-hhcC-CeEEEEecccc
Q 013661 314 MFSYASSA-HERG-IEIIIAGAGGA 336 (438)
Q Consensus 314 ~~~~~~~~-~~~g-~~v~i~~ag~~ 336 (438)
+.++++.+ ++.| +++++-.||..
T Consensus 68 ~~~~i~~~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 68 VEAAIEALPEEFGRIDILVNNAGLA 92 (246)
T ss_pred HHHHHHHHHHhhCcccEEEecCCCC
Confidence 66666543 3334 77888888644
No 320
>PRK00861 putative lipid kinase; Reviewed
Probab=27.55 E-value=1.9e+02 Score=28.04 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=42.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC--CCCceEecc
Q 013661 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVP 355 (438)
Q Consensus 278 gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVi~~p 355 (438)
|+.+......++...|+. ++++++......++. .++.+++...+.+++++ +|+.+.+-.++.+. +..|+--+|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~~a---~~~a~~~~~~~~d~vv~-~GGDGTl~evv~~l~~~~~~lgviP 88 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPEIGA---DQLAQEAIERGAELIIA-SGGDGTLSAVAGALIGTDIPLGIIP 88 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCCCCH---HHHHHHHHhcCCCEEEE-ECChHHHHHHHHHHhcCCCcEEEEc
Confidence 333334456666777776 477777766655543 44555555567787665 45666555555443 233444457
Q ss_pred CCC
Q 013661 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
..+
T Consensus 89 ~GT 91 (300)
T PRK00861 89 RGT 91 (300)
T ss_pred CCc
Confidence 653
No 321
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=27.05 E-value=3.3e+02 Score=25.04 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.+.++.+.++..+..+....+. -.+++.+.+++..+.+ ..++++|-.+|.
T Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 42 TAERAELAVAKLRQEGIKAHAAPFN-VTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEecC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3445555555555555433222111 2345555555544322 236666666653
No 322
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=26.96 E-value=2.8e+02 Score=24.74 Aligned_cols=90 Identities=14% Similarity=-0.007 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~s--D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
.+...|+..+...+...+. ...++++|+..+.+ |-....++++.+++.|+++++- +..-.++.+.++.
T Consensus 86 t~l~~aL~~A~~~l~~~~~-----~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~I--giG~~~~~L~~ia--- 155 (183)
T cd01453 86 PSLQNGLEMALESLKHMPS-----HGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVI--GLSAEMHICKEIC--- 155 (183)
T ss_pred hhHHHHHHHHHHHHhcCCc-----cCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEE--EechHHHHHHHHH---
Confidence 7888888888877753221 01244545543322 3334557788889999876544 3322233233333
Q ss_pred hhcCCeEEEEeccccCcccccccC
Q 013661 322 HERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
+.-|=+.+.+.. +.+|+.++..
T Consensus 156 ~~tgG~~~~~~~--~~~l~~~~~~ 177 (183)
T cd01453 156 KATNGTYKVILD--ETHLKELLLE 177 (183)
T ss_pred HHhCCeeEeeCC--HHHHHHHHHh
Confidence 344445555432 3466666544
No 323
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.89 E-value=3.6e+02 Score=25.29 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=25.2
Q ss_pred EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccc
Q 013661 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 340 (438)
Q Consensus 302 ~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 340 (438)
+-++|..+..+++.+.++.+++.|++++.......+.|.
T Consensus 51 ~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 89 (268)
T TIGR00393 51 VLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLA 89 (268)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCccc
Confidence 444566777777888888888888886654433333333
No 324
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.87 E-value=3e+02 Score=21.26 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=51.1
Q ss_pred EcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
.|.|+.|.-.++.+-..... ....+.++.| .+++.+..+.......+.++-.+ . ...|+.+.++++..
T Consensus 4 ~G~dRyeTs~~va~~~~~~~-------~~~~v~ia~g--~~~~Dalsa~~~a~~~~~PIll~--~-~~l~~~~~~~l~~~ 71 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDN-------KSDKVYIASG--DNFADALSASPLAAKNNAPILLV--N-NSLPSSVKAFLKSL 71 (92)
T ss_pred CCCCHHHHHHHHHHHhcccC-------CCCEEEEEeC--cchhhhhhhHHHHHhcCCeEEEE--C-CCCCHHHHHHHHHc
Confidence 36777665555443322110 2345545544 45788888887878899998777 4 77788899999643
Q ss_pred hhcCCeEEEEeccccCcccc
Q 013661 322 HERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~ 341 (438)
..-+|++. |+.+.++.
T Consensus 72 --~~~~v~ii--Gg~~~is~ 87 (92)
T PF04122_consen 72 --NIKKVYII--GGEGAISD 87 (92)
T ss_pred --CCCEEEEE--CCCCccCH
Confidence 22346655 55555443
No 325
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.75 E-value=3.6e+02 Score=25.94 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEE
Q 013661 293 LTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEII 329 (438)
Q Consensus 293 l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~ 329 (438)
+..++=.-.+-++|..|...++.+.++.++++|++++
T Consensus 172 ~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vI 208 (281)
T COG1737 172 LALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVI 208 (281)
T ss_pred HHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEE
Confidence 3444444344555666666667777777777777654
No 326
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=26.75 E-value=4.9e+02 Score=25.02 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=65.7
Q ss_pred EcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE----ecC---------C
Q 013661 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI----VSA---------H 308 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v----~s~---------h 308 (438)
...|.++|++.|.+..++- ....+-+.|+ +.+.+..+.|.+.|+|+...+ -|. -
T Consensus 88 y~~s~~~a~~nA~r~~ke~---------gA~aVKlEGG----~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqG 154 (268)
T COG0413 88 YEVSPEQALKNAARLMKEA---------GADAVKLEGG----EEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQG 154 (268)
T ss_pred cCCCHHHHHHHHHHHHHHh---------CCCEEEEcCC----HHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeec
Confidence 5578999999999888752 1223356666 678888899999999976554 111 2
Q ss_pred CChHHHHHhHh---hhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 309 RTPDLMFSYAS---SAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 309 r~~~~~~~~~~---~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
|+.+...+.++ .+++-|+-.+ +.-+-...|+--|......|+||+=-
T Consensus 155 r~~~~a~~l~~dA~ale~AGaf~i-vlE~Vp~~lA~~IT~~lsiPtIGIGA 204 (268)
T COG0413 155 RTEESAEKLLEDAKALEEAGAFAL-VLECVPAELAKEITEKLSIPTIGIGA 204 (268)
T ss_pred CCHHHHHHHHHHHHHHHhcCceEE-EEeccHHHHHHHHHhcCCCCEEeecC
Confidence 33444444443 3455555422 22234567888888899999999854
No 327
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.59 E-value=2.3e+02 Score=27.91 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=40.4
Q ss_pred eEEEEEccCCCHHHHHHHHHHH-HHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l-~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
+|.+|+ .+++.++.+++.+ +..++++..-++..-+.-+...++.+.+..-.+.++|=..|++-..|....
T Consensus 75 nvvLIs---Rt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~ 145 (312)
T KOG1014|consen 75 NVVLIS---RTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVGMSYDYPESFL 145 (312)
T ss_pred EEEEEe---CCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEecccccCCCcHHHH
Confidence 455664 5678888887666 456666554444433432223334444454445577777888765566643
No 328
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.55 E-value=3.2e+02 Score=26.28 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh-cCCeEEEEecc
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAG 334 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~-~g~~v~i~~ag 334 (438)
.++.++|+|.++ -...+.++.|.+.|+++-.. -|+-+++.+..+++++ .|++|.+..+.
T Consensus 5 ~~~~~lITGASs--GIG~~~A~~lA~~g~~liLv----aR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 5 KGKTALITGASS--GIGAELAKQLARRGYNLILV----ARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CCcEEEEECCCc--hHHHHHHHHHHHCCCEEEEE----eCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 355569999876 67889999999999998877 6888888888888754 45777766553
No 329
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=26.42 E-value=1.8e+02 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=16.3
Q ss_pred HHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 292 ILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 292 ~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
.++++|..+++.+......++...+.++.+...+++.++
T Consensus 25 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 63 (269)
T cd01391 25 AAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGII 63 (269)
T ss_pred HHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334433334444444444444444444444444444443
No 330
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=26.39 E-value=2.6e+02 Score=27.09 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=42.5
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
+|+|.=+ |.|...+..|.+..+++|++..-..++-...|+.+.++++++
T Consensus 104 PGrVLHi---DGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~ 152 (283)
T TIGR02855 104 PGRVLHI---DGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV 152 (283)
T ss_pred CCcEEee---cCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh
Confidence 4777555 788999999999999999999988888889999999999655
No 331
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=26.32 E-value=4.6e+02 Score=25.14 Aligned_cols=114 Identities=14% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCeEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc--cCccccc--c
Q 013661 270 LPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG--AAHLPGM--V 343 (438)
Q Consensus 270 ~~~v~ii~gs~s--D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~--i 343 (438)
..+++++..+.. .....+.+.+..+++|+++....+ .+.+++.+.++.+.+ ..+++...... ..+...+ .
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v---~~~~~~~~~~~~l~~-~~da~~~~~~~~~~~~~~~i~~~ 206 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPV---PSSEDLEQALEALAE-KVDALYLLPDNLVDSNFEAILQL 206 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEE---SSGGGHHHHHHHHCT-T-SEEEE-S-HHHHHTHHHHHHH
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEec---CcHhHHHHHHHHhhc-cCCEEEEECCcchHhHHHHHHHH
Confidence 356666654322 135566777777889998754433 344556666666654 34555443311 1111112 2
Q ss_pred cCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC---CcchHHHHHHHHHcCCC
Q 013661 344 AARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN---NATNAGLLAVRMLGFGD 402 (438)
Q Consensus 344 ~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~---~~~~Aa~~a~~il~~~~ 402 (438)
+.....||++.=. ..+..|.- +.+.++ -|..||.+|.+||.-.+
T Consensus 207 ~~~~~iPv~~~~~--------------~~v~~Gal-~~~~~~~~~~G~~Aa~~a~~IL~G~~ 253 (294)
T PF04392_consen 207 ANEAKIPVFGSSD--------------FYVKAGAL-GGYSVDYYEQGRQAAEMAVRILKGEK 253 (294)
T ss_dssp CCCTT--EEESSH--------------HHHCTT-S-EEEE--HHHHHHHHHHHHHHHCTT--
T ss_pred HHhcCCCEEECCH--------------HHhcCCcE-EEEccCHHHHHHHHHHHHHHHHCCCC
Confidence 3456678877411 01133432 233334 37788888999987544
No 332
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=26.26 E-value=4.5e+02 Score=26.91 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=54.1
Q ss_pred EEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCC-----------
Q 013661 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH----------- 308 (438)
Q Consensus 240 i~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~h----------- 308 (438)
+..|+|.++++.+.....+.-..+| ...-|-. ..--+..+...+.++++.+++.++++++-++...
T Consensus 2 ~~~G~~~~~v~~~y~~ltG~~~~pP--~walG~~-~~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d 78 (441)
T PF01055_consen 2 FFSGPTPKEVLRQYTELTGRPPLPP--RWALGFW-QSRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWD 78 (441)
T ss_dssp EEEESSHHHHHHHHHHHHSSS------GGGGSEE-EEESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-
T ss_pred EEeCcCHHHHHHHHHHHHCCCCCCc--hhhhceE-eecCcCCCHHHHHHHHHHHHHcCCCccceeccccccccccccccc
Confidence 4578999999999999888644211 0011322 2333445688999999999999999998875522
Q ss_pred --CChHHHHHhHhhhhhcCCeEEE
Q 013661 309 --RTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 309 --r~~~~~~~~~~~~~~~g~~v~i 330 (438)
|=|+ ..++++.+++.|+++.+
T Consensus 79 ~~~FPd-~~~~~~~l~~~G~~~~~ 101 (441)
T PF01055_consen 79 PERFPD-PKQMIDELHDQGIKVVL 101 (441)
T ss_dssp TTTTTT-HHHHHHHHHHTT-EEEE
T ss_pred cccccc-hHHHHHhHhhCCcEEEE
Confidence 2232 45566666888999664
No 333
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.24 E-value=1.3e+02 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=15.0
Q ss_pred HHHhHhhhhhcCCeEEEEeccccCccccc
Q 013661 314 MFSYASSAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
+...++++.++|+.+++.+.-.-+..-|+
T Consensus 105 ~~~~v~~~~~~Gy~iviiG~~~HpEv~gi 133 (281)
T PRK12360 105 IQNIVEEYYNKGYSIIIVGDKNHPEVIGI 133 (281)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCceeeEe
Confidence 33444555566777776654333333333
No 334
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.12 E-value=5.1e+02 Score=23.86 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEec-CCCChHHHHHhHhhhhhcCCeEEEEe-c-cc--cCcccccc---cCCCCCceEec
Q 013661 283 LPVMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIAG-A-GG--AAHLPGMV---AARTPLPVIGV 354 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~~~~v~s-~hr~~~~~~~~~~~~~~~g~~v~i~~-a-g~--~~~l~~~i---~~~~~~pVi~~ 354 (438)
.+.+.++.+..+++|+.+...... ..-+|+.+.++.+.+.+-|++.+..+ + |. ...+..++ ........|++
T Consensus 107 ~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~ 186 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGF 186 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEE
Confidence 778888888888999888766533 34467888888888777788755332 2 21 11222222 22222233443
Q ss_pred cCCCCCCCChhhHHHhhhCCCCCceEEEEeC
Q 013661 355 PVRASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 355 p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~ 385 (438)
=.-. --|+.---+..++-.|+-..-+.+.
T Consensus 187 H~Hn--d~Gla~An~laA~~aGa~~id~t~~ 215 (237)
T PF00682_consen 187 HAHN--DLGLAVANALAALEAGADRIDGTLG 215 (237)
T ss_dssp EEBB--TTS-HHHHHHHHHHTT-SEEEEBGG
T ss_pred EecC--CccchhHHHHHHHHcCCCEEEccCc
Confidence 2211 1244322466666788776644433
No 335
>PRK15005 universal stress protein F; Provisional
Probab=26.01 E-value=2.9e+02 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=15.6
Q ss_pred CCChHHHHHhHhhhhhcCCeEEEEecc
Q 013661 308 HRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 308 hr~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
++.|. ..+++.+++.++++++.++.
T Consensus 92 ~G~p~--~~I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 92 EGSPK--DRILELAKKIPADMIIIASH 116 (144)
T ss_pred CCCHH--HHHHHHHHHcCCCEEEEeCC
Confidence 67664 33455556777887776553
No 336
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=26.00 E-value=3.3e+02 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=24.1
Q ss_pred CeEEEEEccC---CCHHHHHHHHHHHHHcCCcEEEE
Q 013661 271 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 271 ~~v~ii~gs~---sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
..|.+.+-++ +.=+++..+.+.|+++|++++..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE
Confidence 4565666544 34477889999999999998754
No 337
>PRK07478 short chain dehydrogenase; Provisional
Probab=25.99 E-value=2.9e+02 Score=25.44 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+..=-..-+...+.. ...| ++.+ .+.+.+.++.+.++..|.++....+. ...++.+.+.
T Consensus 8 ~~lItGas~giG~~ia~~l~~~----------G~~v-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 73 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFARE----------GAKV-VVGA--RRQAELDQLVAEIRAEGGEAVALAGD-VRDEAYAKAL 73 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 4566666654334434433321 2244 3332 33456677777777777554333222 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ ..++++|-.||.
T Consensus 74 ~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 74 VALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 655432 257788887764
No 338
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=25.90 E-value=3.8e+02 Score=26.16 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=20.1
Q ss_pred EEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 303 RIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 303 ~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
-++|..+....+.+.++.+++.|++++....
T Consensus 99 I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~ 129 (326)
T PRK10892 99 IAISNSGESSEILALIPVLKRLHVPLICITG 129 (326)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCcEEEEEC
Confidence 3455556666677777777777777664443
No 339
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=25.78 E-value=1.5e+02 Score=23.89 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=35.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG 325 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g 325 (438)
++.++++-.+........+...|+++|++...-+++-+ .++-.+.++++.+.|
T Consensus 5 ~~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G 57 (123)
T PF01522_consen 5 KKSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAG 57 (123)
T ss_dssp SSEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT
T ss_pred CCEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHH
Confidence 33447777777788899999999999999777665532 344445666666667
No 340
>PRK14675 hypothetical protein; Provisional
Probab=25.67 E-value=2e+02 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCcc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 113 ATDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 113 i~~~a~~i~~~lg~~--------G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
-++.|.+.++.-||+ +...+|++..+++.+.|+||-.|.+.
T Consensus 14 gE~~A~~~L~~~G~~il~rn~r~~~GEIDlIa~d~~~lvFVEVK~R~~~ 62 (125)
T PRK14675 14 GESIAVTYLKGLRYKIVERNFRCRCGEIDIIARDGKTLVFVEVKTRKNY 62 (125)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCCeEEEEEEeCCEEEEEEEEeccCC
Confidence 456677777777752 45779988876778999999999763
No 341
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.66 E-value=3.2e+02 Score=21.12 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=24.8
Q ss_pred CeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEec
Q 013661 271 PRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVS 306 (438)
Q Consensus 271 ~~v~ii~gs~s---D~~~~~~~~~~l~~~G~~~~~~v~s 306 (438)
..|.++|-|.. .=+.+..+.+.|+++|++|+..-+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~ 46 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL 46 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC
Confidence 44556665433 3457778888999999998766544
No 342
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=25.49 E-value=6.4e+02 Score=24.58 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHH-HHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc
Q 013661 282 DLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 282 D~~~~~~~~~~l-~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
.......++..+ ++.|++.-.++..-.++...+.+.+..+.+.|++=+.+..|
T Consensus 66 ~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrG 119 (296)
T PRK09432 66 ERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRG 119 (296)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 344455444455 77899987777777888888999888888889985555554
No 343
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=25.37 E-value=2.1e+02 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
++|......+...|+++|..+++.
T Consensus 6 ddd~~R~~~L~~ILeFlGe~~~~~ 29 (109)
T PF06490_consen 6 DDDAERRQRLSTILEFLGEQCEAV 29 (109)
T ss_pred CCcHHHHHhhhhhhhhcCCCeEEe
Confidence 678889999999999999987765
No 344
>PRK07109 short chain dehydrogenase; Provisional
Probab=25.31 E-value=3.2e+02 Score=26.90 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=43.4
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+..=-...+.+.+.. ...| ++.+ .+.+.++++.+.++..|.++....+. -..++.+.+.
T Consensus 10 ~vlITGas~gIG~~la~~la~~----------G~~V-vl~~--R~~~~l~~~~~~l~~~g~~~~~v~~D-v~d~~~v~~~ 75 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARR----------GAKV-VLLA--RGEEGLEALAAEIRAAGGEALAVVAD-VADAEAVQAA 75 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEEE--CCHHHHHHHHHHHHHcCCcEEEEEec-CCCHHHHHHH
Confidence 4666776665444444444431 2234 3332 34556666666777777664332222 2345556555
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++.+.+ ..++++|-.+|.
T Consensus 76 ~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHCCCCCEEEECCCc
Confidence 544322 246777776653
No 345
>PRK13059 putative lipid kinase; Reviewed
Probab=25.31 E-value=2.4e+02 Score=27.36 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=41.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC----CCCceEe
Q 013661 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR----TPLPVIG 353 (438)
Q Consensus 278 gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~----~~~pVi~ 353 (438)
|+.+......++.+.|.+.|+++......-+...+ ...++.+.+.+++|+ +|+.+-+-.++.+. ...|+--
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~d~vi~-~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDLK----NAFKDIDESYKYILI-AGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHH----HHHHHhhcCCCEEEE-ECCccHHHHHHHHHHhcCCCCcEEE
Confidence 44334456677888899999886643333232222 223333456776654 45665555554332 2345555
Q ss_pred ccCCC
Q 013661 354 VPVRA 358 (438)
Q Consensus 354 ~p~~~ 358 (438)
+|..+
T Consensus 88 iP~GT 92 (295)
T PRK13059 88 LPVGT 92 (295)
T ss_pred ECCCC
Confidence 67753
No 346
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.19 E-value=64 Score=32.35 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=16.1
Q ss_pred hhHHHhhhCCCCCceE-EEEeCCcchHHHHHHH
Q 013661 365 DSLLSIVQMPRGVPVA-TVAINNATNAGLLAVR 396 (438)
Q Consensus 365 ~~l~s~~~~~~g~p~~-tv~~~~~~~Aa~~a~~ 396 (438)
|.|-.+......+=+. .+ +..|+.+|+.
T Consensus 153 d~l~dtassh~r~~iveVM----GR~aG~lAl~ 181 (347)
T COG0205 153 DNLRDTASSHERIFIVEVM----GRHAGWLALA 181 (347)
T ss_pred HHHHHHHhCcCCEEEEEec----CcChhHHHHH
Confidence 4445556667776555 44 5566665543
No 347
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=25.10 E-value=1.4e+02 Score=27.94 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~e~sv~~~~ 75 (438)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+ ...++.+..+..... +.-+-++..+
T Consensus 122 ~~r~~L~~lgL~~~~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~lA~~l~~~~P~~~t~~~~k~~R~gkvfiDylq 197 (227)
T cd04862 122 LVRELLDELGLESFVKTS----GGKGLHVVVPLAPRAGWDEVKAFAKALAQHLARTNPDRFVATMGKAKRVGKIFIDYLR 197 (227)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhHHhhHHhCCCcEEEECcc
Confidence 455667889999999993 68999875 4566666555433 133444455544442 1246666666
Q ss_pred cCCCeEEE
Q 013661 76 GRDKSILC 83 (438)
Q Consensus 76 d~~G~~~~ 83 (438)
+..|....
T Consensus 198 N~~g~T~v 205 (227)
T cd04862 198 NGRGATAV 205 (227)
T ss_pred CCCCCeEE
Confidence 66665443
No 348
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=25.09 E-value=10 Score=37.58 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh---------cCCC--CcEEEeeccCCCeEEEEEEEE
Q 013661 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL---------GGFD--RGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 7 ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~---------~~~~--~~~lvEe~I~g~~e~sv~~~~ 75 (438)
..+..+++.+|+|++.||..++ .+.+.. ...+..++.. .... .++++|++.++ .++.+.+.-
T Consensus 77 g~iqg~le~~giPyvg~gv~~S-a~~mdk-----~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~-l~~p~~Vkp 149 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLAS-AGAMDK-----IVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEG-LGFPLFVKP 149 (317)
T ss_pred chHHHHHHHhCCCEecCchhhh-hhcccH-----HHHHHHHHHCCCCccceeeeecccchhHHHHHhhcc-cCCCEEEEc
Confidence 4567788999999999997654 444432 2222222221 1111 34677777775 666666554
Q ss_pred cC
Q 013661 76 GR 77 (438)
Q Consensus 76 d~ 77 (438)
+.
T Consensus 150 ~~ 151 (317)
T COG1181 150 AR 151 (317)
T ss_pred CC
Confidence 43
No 349
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=25.08 E-value=3.9e+02 Score=22.03 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013661 114 TDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 114 ~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
.+++.++++.||.. ...+++..-+||+.|+ +++.-.-
T Consensus 10 ~~La~~ia~~L~~~-~~~~~~~~F~dGE~~v-~i~~~v~ 46 (116)
T PF13793_consen 10 QDLAERIAEALGIP-LGKVETKRFPDGETYV-RIPESVR 46 (116)
T ss_dssp HHHHHHHHHHTTS--EE-EEEEE-TTS-EEE-EESS--T
T ss_pred HHHHHHHHHHhCCc-eeeeEEEEcCCCCEEE-Eeccccc
Confidence 46788999999974 4456666557898886 7766443
No 350
>PLN02780 ketoreductase/ oxidoreductase
Probab=25.02 E-value=2.6e+02 Score=27.41 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=40.0
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCC-hHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRT-PDLM 314 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~-~~~~ 314 (438)
.++.+|.+..=-.+-+.+.++. ...| ++. +.+.+.++++.+.++.. +..+....+..... .+..
T Consensus 55 ~~lITGAs~GIG~alA~~La~~----------G~~V-il~--~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~ 121 (320)
T PLN02780 55 WALVTGPTDGIGKGFAFQLARK----------GLNL-VLV--ARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGV 121 (320)
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCCE-EEE--ECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHH
Confidence 3556676655444444444431 2244 333 24566777777776553 22322222222222 2333
Q ss_pred HHhHhhhhhcCCeEEEEecccc
Q 013661 315 FSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 315 ~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
.++.+.+....++++|-.||..
T Consensus 122 ~~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 122 KRIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred HHHHHHhcCCCccEEEEecCcC
Confidence 3344333322344778777754
No 351
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=24.89 E-value=2.3e+02 Score=27.13 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=49.0
Q ss_pred EcCCHHHHHHHHHHHhhcCCCCccccCCCCe--EEEEEccCCCHHHHHHHHHHHHHcCCcE-EEEEecCCCChHHHHHhH
Q 013661 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPR--IGIIMGSDSDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~--v~ii~gs~sD~~~~~~~~~~l~~~G~~~-~~~v~s~hr~~~~~~~~~ 318 (438)
.+.+.+|++.++.++...... ..-. +.+-..+.++.+.+.++++.+.+.|... ..--..-.-+|+.+.+++
T Consensus 103 ~~~~~~e~~~~~~~~i~~a~~------~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~ 176 (262)
T cd07948 103 HGKSITEIIESAVEVIEFVKS------KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELV 176 (262)
T ss_pred hCCCHHHHHHHHHHHHHHHHH------CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHH
Confidence 357888888888777765432 1112 2333456678888888888888888772 111122367788888888
Q ss_pred hhhhh
Q 013661 319 SSAHE 323 (438)
Q Consensus 319 ~~~~~ 323 (438)
+.+++
T Consensus 177 ~~~~~ 181 (262)
T cd07948 177 RTLRG 181 (262)
T ss_pred HHHHH
Confidence 76653
No 352
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=24.78 E-value=4.2e+02 Score=24.42 Aligned_cols=40 Identities=35% Similarity=0.420 Sum_probs=22.8
Q ss_pred ccccccC--CCCCceEeccCCC-CCCCChhhHHHhhhCCCCCceEEEE
Q 013661 339 LPGMVAA--RTPLPVIGVPVRA-SALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 339 l~~~i~~--~~~~pVi~~p~~~-~~~~g~~~l~s~~~~~~g~p~~tv~ 383 (438)
|-.++.. -.+..|||+|++. ...+--+.| +..|+|+.|+.
T Consensus 137 l~eli~~g~~~PalVIg~PVGFV~A~ESKe~L-----~~~~iP~It~~ 179 (203)
T PRK05954 137 LCQQIRAGRVKPSLVIGVPVGFVSVVEAKQAL-----AQLDVPQIRVE 179 (203)
T ss_pred HHHHHHcCCCCCCEEEEECCcccCHHHHHHHH-----HhCCCCEEEEe
Confidence 3444432 3567899999963 111112222 24689999765
No 353
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.66 E-value=5.6e+02 Score=23.62 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=48.5
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcE-EEE-------------------EecCCCChHHHHHhHhhhhhcCCeEE
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPH-EVR-------------------IVSAHRTPDLMFSYASSAHERGIEII 329 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~-~~~-------------------v~s~hr~~~~~~~~~~~~~~~g~~v~ 329 (438)
.++| |++|--..--..++.+..|..+|++. .+. .+|--+..+++...++.+++.|++++
T Consensus 39 ~gkv-~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~li 117 (202)
T COG0794 39 KGKV-FVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLI 117 (202)
T ss_pred CCcE-EEEcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEE
Confidence 4666 77886666678888888999999883 333 23444445566666666677676654
Q ss_pred EEeccccCcccccccCCCCCceEeccCC
Q 013661 330 IAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 330 i~~ag~~~~l~~~i~~~~~~pVi~~p~~ 357 (438)
-.-..-...| ++-.+-|+.+|..
T Consensus 118 aiT~~~~SsL-----ak~aDvvl~ip~~ 140 (202)
T COG0794 118 AITSNPDSSL-----AKAADVVLVIPVK 140 (202)
T ss_pred EEeCCCCChH-----HHhcCeEEEccCc
Confidence 3222111112 2334556777764
No 354
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=24.66 E-value=5.6e+02 Score=24.57 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=53.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe---cCCCChHHHHHhHhh-hhhcCCeEEEEec----cccCccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASS-AHERGIEIIIAGA----GGAAHLPGM 342 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~---s~hr~~~~~~~~~~~-~~~~g~~v~i~~a----g~~~~l~~~ 342 (438)
+.|.+++-++ +.++++.+.+-.+|..--.-+. ..+-.|..+...+.. .+..+.++++++. |-+++++.+
T Consensus 56 ~eV~vlt~Gp---~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~ 132 (260)
T COG2086 56 GEVTVLTMGP---PQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPL 132 (260)
T ss_pred ceEEEEEecc---hhhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHH
Confidence 4555555444 5566666667788888332222 345566666665544 3566777776655 667899999
Q ss_pred ccCCCCCceEec
Q 013661 343 VAARTPLPVIGV 354 (438)
Q Consensus 343 i~~~~~~pVi~~ 354 (438)
++.+.-.|.++-
T Consensus 133 lAe~Lg~P~~t~ 144 (260)
T COG2086 133 LAELLGWPQVTY 144 (260)
T ss_pred HHHHhCCceeee
Confidence 999999998864
No 355
>PRK05876 short chain dehydrogenase; Provisional
Probab=24.59 E-value=3.2e+02 Score=25.87 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=43.1
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+..=-..-+.+.+.. .-.| +++ +.+.+.+.++.+.++..|.++....+. -..++.+.+++
T Consensus 9 vlVTGas~gIG~ala~~La~~----------G~~V-v~~--~r~~~~l~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 74 (275)
T PRK05876 9 AVITGGASGIGLATGTEFARR----------GARV-VLG--DVDKPGLRQAVNHLRAEGFDVHGVMCD-VRHREEVTHLA 74 (275)
T ss_pred EEEeCCCchHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHH
Confidence 556666554444444444331 1234 333 344566777777777667554322222 23455566666
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013661 319 SSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~ 335 (438)
++..+ ..++++|-.||.
T Consensus 75 ~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 75 DEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 54432 246788877764
No 356
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=24.58 E-value=6.2e+02 Score=24.17 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC--H-HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD--L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD--~-~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.+|..+|..+++.++.+.+. ..++...|+++....++ + ..+..+.+.+++.|+.+... ..+..++...+
T Consensus 31 s~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~ 108 (328)
T PRK11303 31 SDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIA--CSDDQPDNEMR 108 (328)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHH
Confidence 35677777777776665320 01123467777643222 1 22334556677888876553 34666776667
Q ss_pred hHhhhhhcCCeEEEEec
Q 013661 317 YASSAHERGIEIIIAGA 333 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~a 333 (438)
+++.+...+++-+|...
T Consensus 109 ~~~~l~~~~vdgiIi~~ 125 (328)
T PRK11303 109 CAEHLLQRQVDALIVST 125 (328)
T ss_pred HHHHHHHcCCCEEEEcC
Confidence 77777777888666543
No 357
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.43 E-value=1.7e+02 Score=28.49 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.0
Q ss_pred hcCCeEEEEeccccC
Q 013661 323 ERGIEIIIAGAGGAA 337 (438)
Q Consensus 323 ~~g~~v~i~~ag~~~ 337 (438)
-.+++|+|-.||++-
T Consensus 89 fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL 103 (282)
T ss_pred cCCCCEEEecCcccc
Confidence 346888888888764
No 358
>PRK13057 putative lipid kinase; Reviewed
Probab=24.42 E-value=3.1e+02 Score=26.30 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC--CCCceEeccCCC
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVPVRA 358 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVi~~p~~~ 358 (438)
....++.+.|++.|++++.... +.+....++.++. ..+.+++|+ +|+.+-+-.++.+. +..|+--+|..+
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~iiv-~GGDGTv~~v~~~l~~~~~~lgiiP~GT 84 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVIV-GGGDGTLNAAAPALVETGLPLGILPLGT 84 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEEE-ECchHHHHHHHHHHhcCCCcEEEECCCC
Confidence 4567788889999998776642 3344555666553 346776654 45665555554332 345655567653
No 359
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=24.27 E-value=6.5e+02 Score=24.24 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++..+|..+++.++.+.+. ...+...++++..+.++ ......+.+.+++.|+.+.. ...+.+++...+
T Consensus 34 s~~tr~~V~~~a~elgY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~ 111 (342)
T PRK10014 34 STATGERVNQAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFL--LQGGKDGEQLAQ 111 (342)
T ss_pred CHHHHHHHHHHHHHhCCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHH
Confidence 44556666666666554310 00122356666643222 22333455677788876543 344667776677
Q ss_pred hHhhhhhcCCeEEEEec
Q 013661 317 YASSAHERGIEIIIAGA 333 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~a 333 (438)
+++.+..++++.+|...
T Consensus 112 ~~~~l~~~~vdgiIi~~ 128 (342)
T PRK10014 112 RFSTLLNQGVDGVVIAG 128 (342)
T ss_pred HHHHHHhCCCCEEEEeC
Confidence 77777777888666554
No 360
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=24.24 E-value=4.4e+02 Score=25.62 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=14.4
Q ss_pred ecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 305 VSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 305 ~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
+|--+..+.+.+.++.++++|++++-
T Consensus 96 iS~sG~t~~~~~~~~~ak~~g~~vI~ 121 (321)
T PRK11543 96 ISYSGGAKELDLIIPRLEDKSIALLA 121 (321)
T ss_pred EeCCCCcHHHHHHHHHHHHcCCeEEE
Confidence 44444455566666666666666443
No 361
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=24.19 E-value=1.5e+02 Score=28.20 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~e~sv~~~~ 75 (438)
.+++.++++|.+-.+|-+ ||+|++++ .+.++.+.+.+.+ ...++.+..|..... +.-+-++..+
T Consensus 138 ~~r~~L~~lgL~~f~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~Pd~~t~~~~k~~R~gkvfiDylq 213 (245)
T TIGR02778 138 LIRELLDELGLESFVKTS----GGKGLHVYVPLRPTLSWDEVKDFAKALAQALAQQMPDRFTAEMSKKNRVGKIFVDYLR 213 (245)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 455667889999999993 68999875 4556666555433 133444555555542 1245566666
Q ss_pred cCCCeEEE
Q 013661 76 GRDKSILC 83 (438)
Q Consensus 76 d~~G~~~~ 83 (438)
+..|....
T Consensus 214 N~~g~T~v 221 (245)
T TIGR02778 214 NARGKTTV 221 (245)
T ss_pred CCCCCeEE
Confidence 66665443
No 362
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.96 E-value=1.7e+02 Score=27.11 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=7.0
Q ss_pred ChHHHHHhHhhhhhcCCe
Q 013661 310 TPDLMFSYASSAHERGIE 327 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~ 327 (438)
++++..++++.+..++++
T Consensus 42 ~~~~~~~~i~~l~~~~vd 59 (273)
T cd06310 42 DVAGQVNLLENAIARGPD 59 (273)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 343333444333333444
No 363
>PF11380 DUF3184: Protein of unknown function (DUF3184); InterPro: IPR021520 This eukaryotic family of proteins has no known function. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=23.76 E-value=86 Score=33.34 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=54.9
Q ss_pred cCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEE-EeccccC---cccccccCCCCCceEeccCCCCCCCChhhHHHhh
Q 013661 296 FSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII-AGAGGAA---HLPGMVAARTPLPVIGVPVRASALDGLDSLLSIV 371 (438)
Q Consensus 296 ~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i-~~ag~~~---~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~ 371 (438)
+=|++.+.+.+ -..-+.+..|+.+.- =.+|+. -.+++.+ +|.-...++..+|||+|- ....|++.|+|++
T Consensus 426 lffNINagfs~-~eaa~qLR~FL~~~F--PtPv~LE~~~~g~a~~~~l~r~F~~LM~LPvv~v~---syeEg~CPLvRSL 499 (691)
T PF11380_consen 426 LFFNINAGFSS-AEAADQLRNFLHGLF--PTPVYLEESAAGAAEEGALSRLFGDLMALPVVGVV---SYEEGVCPLVRSL 499 (691)
T ss_pred ceEEeccccCc-hHHHHHHHHHHHhhC--CCCeEeeccCcccchhHHHHHHHhhhhhccEEEEE---eccccccHHHHHH
Confidence 33445555433 222334555664321 123554 2223343 888888899999999994 4567999999998
Q ss_pred hCC-CCC--ceEEEEeC---CcchHHHHHHHH
Q 013661 372 QMP-RGV--PVATVAIN---NATNAGLLAVRM 397 (438)
Q Consensus 372 ~~~-~g~--p~~tv~~~---~~~~Aa~~a~~i 397 (438)
+.. +|- ++.-|.+. .+.+|.+.+++-
T Consensus 500 ~~A~~~~~r~~V~V~v~~~~~g~g~~l~e~Ra 531 (691)
T PF11380_consen 500 ALAFAGHHRGGVRVSVEQHGFGEGATLREARA 531 (691)
T ss_pred HHhcccccCCeEEEEeCCccccccccHHHHHH
Confidence 771 111 13333333 244777777664
No 364
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=3.8e+02 Score=21.82 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=32.4
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhh
Q 013661 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASS 320 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~ 320 (438)
+-|.|-=+....+...|..+|.+..+--+.-|....++.+++.+
T Consensus 18 ifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~ 61 (104)
T KOG1752|consen 18 IFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKK 61 (104)
T ss_pred EEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHH
Confidence 33567778888888899999988666555567777777777753
No 365
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.57 E-value=2.8e+02 Score=25.79 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=10.1
Q ss_pred CCChHHHHHhHhhhhhcCCeEEE
Q 013661 308 HRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 308 hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
...++.-.++++.+...+++.+|
T Consensus 38 ~~~~~~~~~~i~~~~~~~~Dgii 60 (282)
T cd06318 38 QGDLTKQIADVEDLLTRGVNVLI 60 (282)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Confidence 34444334444444444454333
No 366
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.57 E-value=1.8e+02 Score=30.68 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=38.0
Q ss_pred CCCChHHHHHhHhhhhhcCC---eEEEEeccc-cCcccccccC--CCCCceEeccCC
Q 013661 307 AHRTPDLMFSYASSAHERGI---EIIIAGAGG-AAHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 307 ~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~-~~~l~~~i~~--~~~~pVi~~p~~ 357 (438)
.+++.+.+.+....+.+.|+ .++++..|+ ...++|++|+ .--.|.|.+|+.
T Consensus 216 ~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 216 EVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 56777777777777777788 688887765 4578888776 355789999986
No 367
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=23.56 E-value=4.2e+02 Score=24.60 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=43.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+..=...-+.+.+.. ...| ++. +++.+.+.+....++..|.++....+. -..++.+.++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~----------G~~v-v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~ 77 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKA----------GATI-VFN--DINQELVDKGLAAYRELGIEAHGYVCD-VTDEDGVQAM 77 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHC----------CCeE-EEE--eCCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHH
Confidence 4666676655444444444431 2344 333 233455566666666666554333222 2455666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+..+ ..++++|..+|.
T Consensus 78 ~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHhCCCCCEEEECCCC
Confidence 654332 246788877764
No 368
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.55 E-value=2.1e+02 Score=26.54 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=5.6
Q ss_pred hhhhhcCCeEEE
Q 013661 319 SSAHERGIEIII 330 (438)
Q Consensus 319 ~~~~~~g~~v~i 330 (438)
+.+.+.|++|+.
T Consensus 76 ~~~~~~~iPvV~ 87 (275)
T cd06320 76 ERAKKKGIPVVN 87 (275)
T ss_pred HHHHHCCCeEEE
Confidence 333444555443
No 369
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=23.45 E-value=1.7e+02 Score=27.55 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHh-----cCCCCcEEEeeccCC-CeEEEEEEEE
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITAL-----GGFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~-----~~~~~~~lvEe~I~g-~~e~sv~~~~ 75 (438)
.+++.++++|.+-.+|-+ ||+|++++ .+.++.+.+.+.+ ...++.+..|..... +.-+-++..+
T Consensus 122 ~vr~~L~~lgL~~f~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDy~q 197 (227)
T cd04861 122 LLRELLDELGLESFPKTS----GGKGLHVYVPLAPRYTWDEVRAFAKALARELARRLPDLFTAEMAKAKRGGKIFVDYLQ 197 (227)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 456677889999999994 68998875 4556666555433 133444555555442 1245566666
Q ss_pred cCCCeEEE
Q 013661 76 GRDKSILC 83 (438)
Q Consensus 76 d~~G~~~~ 83 (438)
+..|....
T Consensus 198 N~~g~T~v 205 (227)
T cd04861 198 NARGKTTV 205 (227)
T ss_pred CCCCCeEE
Confidence 65565443
No 370
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=23.42 E-value=6.2e+02 Score=24.33 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=62.7
Q ss_pred EEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEE---------EEEec----C
Q 013661 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------VRIVS----A 307 (438)
Q Consensus 241 ~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~---------~~v~s----~ 307 (438)
..+ +.++++..+.+...+-- -.-+-+-|+ ....+..+.|.+.|+++. ++..+ -
T Consensus 87 sy~-~~e~a~~na~rl~~eaG---------a~aVkiEgg----~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~q 152 (263)
T TIGR00222 87 SYA-TPEQALKNAARVMQETG---------ANAVKLEGG----EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQ 152 (263)
T ss_pred CCC-CHHHHHHHHHHHHHHhC---------CeEEEEcCc----HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeec
Confidence 344 48899988887776321 111133433 334566689999999987 33222 1
Q ss_pred CCChHHHHHhH---hhhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 308 HRTPDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 308 hr~~~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
.|+.++..+.+ +.+++-|+.+++.-. ....+...|......|+||+=.
T Consensus 153 grt~~~a~~~i~~A~a~e~AGA~~ivlE~-vp~~~a~~It~~l~iP~iGIGa 203 (263)
T TIGR00222 153 GKDEEAAKKLLEDALALEEAGAQLLVLEC-VPVELAAKITEALAIPVIGIGA 203 (263)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEcC-CcHHHHHHHHHhCCCCEEeecc
Confidence 35656444544 445777887665433 4457777888888899999733
No 371
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=23.38 E-value=1.7e+02 Score=27.48 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-CeEEEEEEEE
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v------~~~~el~~~~~~~~-----~~~~~~lvEe~I~g-~~e~sv~~~~ 75 (438)
.+++.++++|.+-.+|-+ ||+|+.++ .+.++.+.+.+.+. ..++.+..+..... +.-+-++..+
T Consensus 126 ~~r~~L~~lgL~s~~KTS----G~kGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~P~~~t~~~~k~~R~grvfiDylq 201 (231)
T cd04863 126 WLRDRLAALGLASFPKTS----GSKGLHLYVPLDGPVSSDQTKEFAKALARELEREHPDLVVSRMTKSLRAGKVFVDWSQ 201 (231)
T ss_pred HHHHHHHHcCCccceECC----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHhhCCCcEEEECcc
Confidence 456677889999999993 68998875 46677666554431 23333443333321 1246677777
Q ss_pred cCCCeEEEE
Q 013661 76 GRDKSILCY 84 (438)
Q Consensus 76 d~~G~~~~~ 84 (438)
+..|.....
T Consensus 202 N~~g~T~va 210 (231)
T cd04863 202 NDAAKTTIA 210 (231)
T ss_pred CCCCCeEEe
Confidence 666665433
No 372
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.32 E-value=1.5e+02 Score=30.74 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEecCCCChHHHHHhHhhhhhcCCeEEEEecc-ccCcccccccC-----CCCCceEeccCC-------CCCCCCh-----
Q 013661 303 RIVSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAA-----RTPLPVIGVPVR-------ASALDGL----- 364 (438)
Q Consensus 303 ~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~-----~~~~pVi~~p~~-------~~~~~g~----- 364 (438)
++++.-|.+....+.++.+++.+++.++++.| ++-.-+..|+. ....+||++|-. ....-|+
T Consensus 150 TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~ 229 (443)
T PRK06830 150 TILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE 229 (443)
T ss_pred ccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH
Q ss_pred ------hhHHHhhhC-CCCCceE-EEEeCCcchHHHHHH
Q 013661 365 ------DSLLSIVQM-PRGVPVA-TVAINNATNAGLLAV 395 (438)
Q Consensus 365 ------~~l~s~~~~-~~g~p~~-tv~~~~~~~Aa~~a~ 395 (438)
+.+...... |.|+-+. +++=+.++-|+..|+
T Consensus 230 ~a~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaL 268 (443)
T PRK06830 230 KATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAAL 268 (443)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHH
No 373
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.29 E-value=3.6e+02 Score=24.89 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=40.8
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHH--cCCcEEEEEecCCCChHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM--FSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~--~G~~~~~~v~s~hr~~~~~~ 315 (438)
.++++|.+..=-..-+.+.++. ...| ++.. .+.+.+++..+.+.. .+..+....+. -..++.+.
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~----------G~~v-v~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~ 74 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFARE----------GAAV-ALAD--LDAALAERAAAAIARDVAGARVLAVPAD-VTDAASVA 74 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhccCCceEEEEEcc-CCCHHHHH
Confidence 4666776654444444433321 2244 3332 345666666666665 34333322222 12344455
Q ss_pred HhHhhhhh--cCCeEEEEeccc
Q 013661 316 SYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 316 ~~~~~~~~--~g~~v~i~~ag~ 335 (438)
++++...+ ..++++|-.||.
T Consensus 75 ~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 75 AAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHhCCCcEEEECCCc
Confidence 55544322 257788877764
No 374
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=23.04 E-value=2.4e+02 Score=27.31 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=39.1
Q ss_pred eEEEEEccCCCH-HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 272 RIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|.+-+.+.+ ....++...|...||.-|...- +.-++|++.++ ++..|+..+|.++
T Consensus 7 DVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~-~~~S~Eel~~~---~~~~gi~wiViik 65 (273)
T PF12745_consen 7 DVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYD-ASPSQEELQSY---CREDGISWIVIIK 65 (273)
T ss_pred eEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccc-cCCCHHHHHHH---HHHCCCCEEEEEe
Confidence 466666666666 7778899999999999887421 12256555544 4778999555544
No 375
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=22.99 E-value=56 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.0
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 013661 392 LLAVRMLGFGDADLRARMQQY 412 (438)
Q Consensus 392 ~~a~~il~~~~~~~~~~l~~~ 412 (438)
..|++.|+++-..++.||+.|
T Consensus 22 ~~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 22 SKAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHhC
Confidence 357889999988888888764
No 376
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=22.96 E-value=3.2e+02 Score=21.53 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCcc--------eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 114 TDVAHKAVSSLEGA--------GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 114 ~~~a~~i~~~lg~~--------G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
++.|.+.++..||. +...+|++..+++.+.|+||-.|.+.
T Consensus 3 E~~A~~~L~~~G~~IL~rN~r~~~GEIDiIa~~~~~lvfVEVK~R~~~ 50 (93)
T PF02021_consen 3 EELAARYLERKGYRILERNWRCRRGEIDIIARDGDTLVFVEVKTRSSS 50 (93)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEETTEEEEEEEEETTEEEEEEEEE----
T ss_pred HHHHHHHHHHCCCEEeeeeecCCCCcEeEEEEEcccEEEEEEEEeecc
Confidence 45677777777753 45779999877778999999999764
No 377
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.92 E-value=4.1e+02 Score=22.28 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=43.1
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
..++ +|.|.- .....++..|...|++ .++++ -|++++..++.+.+. +..+....-. .+...+ ...+
T Consensus 12 ~~~v-lviGaG---g~ar~v~~~L~~~g~~-~i~i~--nRt~~ra~~l~~~~~--~~~~~~~~~~---~~~~~~--~~~D 77 (135)
T PF01488_consen 12 GKRV-LVIGAG---GAARAVAAALAALGAK-EITIV--NRTPERAEALAEEFG--GVNIEAIPLE---DLEEAL--QEAD 77 (135)
T ss_dssp TSEE-EEESSS---HHHHHHHHHHHHTTSS-EEEEE--ESSHHHHHHHHHHHT--GCSEEEEEGG---GHCHHH--HTES
T ss_pred CCEE-EEECCH---HHHHHHHHHHHHcCCC-EEEEE--ECCHHHHHHHHHHcC--ccccceeeHH---HHHHHH--hhCC
Confidence 3455 556654 6788888999999988 33333 499998888887662 2333332211 233222 2345
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
-||++++.
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 67777554
No 378
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=22.81 E-value=6.1e+02 Score=24.58 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCc-EEEEEecCC------------CChHHHHHhHhhhh
Q 013661 282 DLPVMKDAAKILTMFSVP-HEVRIVSAH------------RTPDLMFSYASSAH 322 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~-~~~~v~s~h------------r~~~~~~~~~~~~~ 322 (438)
+.+.+.++++.+++.|+. ++.++.+++ ..|+.+.++++..+
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~ 164 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVR 164 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHH
Confidence 456666666666666654 566665544 34666666666554
No 379
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=22.77 E-value=1.5e+02 Score=26.09 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=35.6
Q ss_pred CCeEEEEEccCCCH---HHHHHHHHHHHHcCCc---E-EEEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 270 LPRIGIIMGSDSDL---PVMKDAAKILTMFSVP---H-EVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 270 ~~~v~ii~gs~sD~---~~~~~~~~~l~~~G~~---~-~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
..+++|+.+.-.+. .-+..+.+.|++.|++ + ..+|.++--.|-....++ +...++.+|+
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~---~~~~~DavIa 77 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLA---ESGKYDAVIA 77 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHH---HcCCCCEEEE
Confidence 35787777554443 4556667889999954 2 345556666565444444 3445776665
No 380
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.75 E-value=2.4e+02 Score=27.28 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=45.0
Q ss_pred HHHHcCCcEEEEEe-c--CCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEec
Q 013661 292 ILTMFSVPHEVRIV-S--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 292 ~l~~~G~~~~~~v~-s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 354 (438)
.++.+|++....+. + .--+|..+.++++.+++.+++++++-...+..+...|+..+..+|+.+
T Consensus 192 l~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 192 FEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGEL 257 (286)
T ss_pred HHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEe
Confidence 34778998654332 1 234578888888888999999999888777777777776666666554
No 381
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=22.71 E-value=6.9e+02 Score=23.98 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
++..+|..+++.++.+.+. ..++...++++....++ ......+.+.+++.|+.+... .....++...++
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~ 111 (331)
T PRK14987 34 VALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLA--HYGYKPEMEQER 111 (331)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEe--cCCCCHHHHHHH
Confidence 5677777777777665320 00123456666543222 233445667777888776543 445566665667
Q ss_pred HhhhhhcCCeEEEEe
Q 013661 318 ASSAHERGIEIIIAG 332 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ 332 (438)
++.+..++++-+|..
T Consensus 112 ~~~~~~~~vdgiI~~ 126 (331)
T PRK14987 112 LESMLSWNIDGLILT 126 (331)
T ss_pred HHHHHhcCCCEEEEc
Confidence 766677788866654
No 382
>PTZ00445 p36-lilke protein; Provisional
Probab=22.68 E-value=1.4e+02 Score=27.82 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=37.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCcE-----EEEEec-----------------CCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 279 SDSDLPVMKDAAKILTMFSVPH-----EVRIVS-----------------AHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~-----~~~v~s-----------------~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+.+..+.+....+.|++.|++. |-|.++ -|-+|+ +..|++.+.+.|++|.|+
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpe-fk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPD-FKILGKRLKNSNIKISVV 97 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHH-HHHHHHHHHHCCCeEEEE
Confidence 4466777777788888888883 344333 134565 788999999999997765
No 383
>PRK03298 hypothetical protein; Provisional
Probab=22.65 E-value=6.4e+02 Score=23.60 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=24.6
Q ss_pred EEEEEEEE-eCCCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHHHH
Q 013661 129 IFAVELFW-TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAV 174 (438)
Q Consensus 129 ~~~ve~~~-~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~~ 174 (438)
...||++- |++|.+.++|+-.| ++ ++-++|+.|..
T Consensus 134 ~G~IDil~rD~~G~~V~vEvKRr-~~----------idaV~QL~RYv 169 (224)
T PRK03298 134 IGPVDLLCRDADGGTVAVEIKRR-GE----------IDGVEQLTRYL 169 (224)
T ss_pred CCceeEEEEcCCCCEEEEEEEec-CC----------ccHHHHHHHHH
Confidence 34678765 44789999999999 43 56666666654
No 384
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=22.52 E-value=5.7e+02 Score=22.94 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--CCCCCceEec
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--ARTPLPVIGV 354 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~~~~~pVi~~ 354 (438)
.....+.+.++.+|+.+... ..+.+++...+.++++..++++.+|+.......+. .+. -....|||.+
T Consensus 16 ~~~~g~~~~~~~~g~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 16 QVLKGIEEAAKAAGYQVLLA--NSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKAGIPVVLV 85 (264)
T ss_pred HHHHHHHHHHHHcCCeEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhcCCCEEEe
Confidence 33344445566677655433 44556666666666666667776665543222222 121 1234567655
No 385
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=22.52 E-value=1.7e+02 Score=30.53 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEecCCCChHHHHHhHhhhhhcCCeEEEEecc-ccCcccccccC-----CCCCceEeccCC-------CCCCCCh-----
Q 013661 303 RIVSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAA-----RTPLPVIGVPVR-------ASALDGL----- 364 (438)
Q Consensus 303 ~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~-----~~~~pVi~~p~~-------~~~~~g~----- 364 (438)
++++..|.+....+.++.+++.|++.++++.| ++-.-+..|+. ....+||++|-. ....-|+
T Consensus 154 TiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~ 233 (459)
T PTZ00286 154 TILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE 233 (459)
T ss_pred ceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH
Q ss_pred ------hhHHHhhhCCC-CCceE-EEEeCCcchHHHHHHH
Q 013661 365 ------DSLLSIVQMPR-GVPVA-TVAINNATNAGLLAVR 396 (438)
Q Consensus 365 ------~~l~s~~~~~~-g~p~~-tv~~~~~~~Aa~~a~~ 396 (438)
+++.......+ |+-+. ++ |.+|+.+|+.
T Consensus 234 ~~~~aI~~~~~eA~S~~~~v~iVEvM----GR~sG~LAl~ 269 (459)
T PTZ00286 234 EAQNAIRAAYVEAKSAKNGVGIVKLM----GRDSGFIALH 269 (459)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEec----CcchhHHHHH
No 386
>PRK14679 hypothetical protein; Provisional
Probab=22.50 E-value=1.8e+02 Score=24.75 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
-++.|.+.++.-|| + +...+|++..+++.+.|+||-.|.+.
T Consensus 21 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKtR~~~ 69 (128)
T PRK14679 21 AEGLALLALMLKGYRPLARRFAAAGGEIDLIVRRGRTIAFVEVKARATL 69 (128)
T ss_pred HHHHHHHHHHHCCCEEEeeeccCCCCeEEEEEEeCCEEEEEEEEecCCC
Confidence 34566666776665 3 45779999887788999999999764
No 387
>PRK14685 hypothetical protein; Provisional
Probab=22.36 E-value=2.7e+02 Score=25.02 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.+...++.-|| + ....||++..+++.+.|+||-.|-+.
T Consensus 47 ~gE~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~dg~~LVFVEVKtR~~~ 96 (177)
T PRK14685 47 AYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHA 96 (177)
T ss_pred HHHHHHHHHHHHCCCEEeEeeecCCCCcEEEEEecCCEEEEEEEeECCCC
Confidence 345677777777765 2 45779999887778999999999764
No 388
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.27 E-value=5.5e+02 Score=24.65 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHc-CCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 281 SDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~-G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.|...+.++.+.+++. ++++.+++.. . .+++.++.+.+++.|++.+.+
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~-~--~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTP-N--VTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCC-C--chhHHHHHHHHHHcCCCEEEE
Confidence 3456666777666655 7787777532 1 223555666666777775544
No 389
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=22.18 E-value=5.1e+02 Score=22.32 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=51.1
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHH
Q 013661 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 ~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~ 315 (438)
.+.+..-|.=|++.-+-.++..+.++ | +|. |-.-+..+.+ .++..|++.+=-.+++|+ +.-+
T Consensus 22 ~~tiatgGklf~ev~e~iqeL~d~V~-----------i-~IA-SgDr~gsl~~---lae~~gi~~~rv~a~a~~--e~K~ 83 (152)
T COG4087 22 LYTIATGGKLFSEVSETIQELHDMVD-----------I-YIA-SGDRKGSLVQ---LAEFVGIPVERVFAGADP--EMKA 83 (152)
T ss_pred EEEEccCcEEcHhhHHHHHHHHHhhe-----------E-EEe-cCCcchHHHH---HHHHcCCceeeeecccCH--HHHH
Confidence 34444456677777777766655433 1 332 3223454444 447789998777666676 5556
Q ss_pred HhHhhhhhcCCeEEEEeccccCccccc
Q 013661 316 SYASSAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
++++++++++.+|+-++. ++|..+-+
T Consensus 84 ~ii~eLkk~~~k~vmVGn-GaND~laL 109 (152)
T COG4087 84 KIIRELKKRYEKVVMVGN-GANDILAL 109 (152)
T ss_pred HHHHHhcCCCcEEEEecC-CcchHHHh
Confidence 788888776555554433 44444444
No 390
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.16 E-value=3.6e+02 Score=25.26 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHc-CCcEEEEEecCCCChHHHHHhHhhhhh-cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~-G~~~~~~v~s~hr~~~~~~~~~~~~~~-~g~~v~i~~ag~ 335 (438)
.+...+.++.+.++.. +..+....+. -..++.+.+++++.++ .+++++|..+|.
T Consensus 40 r~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 40 RNEENLKKAREKIKSESNVDVSYIVAD-LTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred CCHHHHHHHHHHHHhhcCCceEEEEec-CCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 3455566666555443 4333222222 2345556666655433 246788877763
No 391
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=22.12 E-value=4.1e+02 Score=21.20 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCH--------HHHHHHHHHHHHcCCcEEEEEecCCCCh-HHH
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDL--------PVMKDAAKILTMFSVPHEVRIVSAHRTP-DLM 314 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~--------~~~~~~~~~l~~~G~~~~~~v~s~hr~~-~~~ 314 (438)
++.++++..+...+.... ..+-++...+.+. ..++.+.+.+++.++++... . .+.| +.+
T Consensus 10 ~~s~~al~~a~~la~~~~---------~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~-~~~~~~~I 77 (124)
T cd01987 10 PNAERLIRRAARLADRLK---------APWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTL--P-GDDVAEAI 77 (124)
T ss_pred cchHHHHHHHHHHHHHhC---------CCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEE--e-CCcHHHHH
Confidence 344566666665554422 2333444433332 33445556667777754322 2 3344 333
Q ss_pred HHhHhhhhhcCCeEEEEeccccCcccccccCC
Q 013661 315 FSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 315 ~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
.++ +++.+++.++.++.+.+.+..++.|.
T Consensus 78 ~~~---~~~~~~dllviG~~~~~~~~~~~~Gs 106 (124)
T cd01987 78 VEF---AREHNVTQIVVGKSRRSRWRELFRGS 106 (124)
T ss_pred HHH---HHHcCCCEEEeCCCCCchHHHHhccc
Confidence 434 46778888888776565666655543
No 392
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=22.06 E-value=4.6e+02 Score=26.16 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=62.5
Q ss_pred EcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEE----EEEecC---------C
Q 013661 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHE----VRIVSA---------H 308 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~----~~v~s~---------h 308 (438)
++.|.++|++.+.+...+-- -.-+-|-|+. ....++.+.|.+.|+++. ++--+. -
T Consensus 108 Y~~s~e~av~nA~rl~~eaG---------a~aVKlEGg~---~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqG 175 (332)
T PLN02424 108 YESSTDQAVESAVRMLKEGG---------MDAVKLEGGS---PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQG 175 (332)
T ss_pred CCCCHHHHHHHHHHHHHHhC---------CcEEEECCCc---HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccC
Confidence 55789999999988865321 0112344442 334577778889999977 221111 1
Q ss_pred CChHHHHHhH---hhhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 309 RTPDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 309 r~~~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
|+.+...+.+ +.+++-|+..++.- +....|...|......|+||+=.
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE-~Vp~~la~~It~~l~IPtIGIGA 225 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLE-CVPAPVAAAITSALQIPTIGIGA 225 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEc-CCcHHHHHHHHHhCCCCEEeecC
Confidence 3444444444 44567777655432 35556888888889999999743
No 393
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=22.05 E-value=1.5e+02 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=21.9
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 236 MGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 236 ~G~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
+|-|.+.|+|.++|+.++.+.+.++-
T Consensus 17 l~iv~~~~~d~d~Al~eM~e~A~~lG 42 (74)
T TIGR03884 17 LGIVSTESDNVDEIVENLREKVKAKG 42 (74)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcC
Confidence 46688999999999999998887653
No 394
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=22.00 E-value=6.3e+02 Score=23.79 Aligned_cols=84 Identities=7% Similarity=-0.030 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~s---D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
+|..+|..++++++.+.+. ..++...|+++.-+.+ .......+.+.++++|+.+... .....++.-.++
T Consensus 6 ~~Tr~rV~~~a~elgY~pn~~a~~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~ 83 (309)
T PRK11041 6 QATRQRVEQAVLEVGYSPQSLGRNLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIG--DCAHQNQQEKTF 83 (309)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHH
Confidence 5677777777777765320 0112346666654322 2334556777888899876554 234455555667
Q ss_pred HhhhhhcCCeEEEEe
Q 013661 318 ASSAHERGIEIIIAG 332 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ 332 (438)
++.+...+++-+|..
T Consensus 84 i~~l~~~~vDgiIi~ 98 (309)
T PRK11041 84 VNLIITKQIDGMLLL 98 (309)
T ss_pred HHHHHHcCCCEEEEe
Confidence 777777788855543
No 395
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=21.98 E-value=4.6e+02 Score=25.05 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=61.7
Q ss_pred EcCCHHHHHHHHHHHhhcCCCCccccCCCCeEE-EEEccCCCHHHHHHHHHHHHHcCCcEEEE-------------EecC
Q 013661 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIG-IIMGSDSDLPVMKDAAKILTMFSVPHEVR-------------IVSA 307 (438)
Q Consensus 242 ~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~-ii~gs~sD~~~~~~~~~~l~~~G~~~~~~-------------v~s~ 307 (438)
.+++.+++.+++.+...+. |-.+ -|-++ ..+.+..+.+.+.|+++... ..-.
T Consensus 85 y~~~~~~av~~a~r~~~~a----------Ga~aVkiEd~----~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~ 150 (254)
T cd06557 85 YQTSPEQALRNAARLMKEA----------GADAVKLEGG----AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQ 150 (254)
T ss_pred ccCCHHHHHHHHHHHHHHh----------CCeEEEEcCc----HHHHHHHHHHHHcCCCeeccccccceeeeccCCceec
Confidence 4577999998888777642 2111 33332 46677778888999874411 1112
Q ss_pred CCChHHHHHhH---hhhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 308 HRTPDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 308 hr~~~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
.||.++..+.+ +.+++-|+.++..-+ ....+.--|......|+||+=.
T Consensus 151 grt~~~a~~~i~ra~a~~~AGA~~i~lE~-v~~~~~~~i~~~v~iP~igiGa 201 (254)
T cd06557 151 GKTEEEAERLLEDALALEEAGAFALVLEC-VPAELAKEITEALSIPTIGIGA 201 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEEcC-CCHHHHHHHHHhCCCCEEEecc
Confidence 45654444444 446788888665433 2345777777788899999854
No 396
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=21.62 E-value=3.2e+02 Score=19.70 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=22.6
Q ss_pred HHhcCcceEEEEEEEEeCCCcEEEEEEc
Q 013661 121 VSSLEGAGIFAVELFWTNNGQILLNEVA 148 (438)
Q Consensus 121 ~~~lg~~G~~~ve~~~~~~g~~~viEiN 148 (438)
++..++.|-..++|.++++|.+.=+++.
T Consensus 3 a~~~~~~G~v~v~~~i~~~G~v~~~~i~ 30 (74)
T TIGR01352 3 ARRRGIEGTVVVRFTVDADGRVTSVSVL 30 (74)
T ss_pred HHHcCCceEEEEEEEECCCCCEEEEEEE
Confidence 3456888999999999999987766664
No 397
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=21.62 E-value=1.6e+02 Score=21.75 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.4
Q ss_pred hcCcceEEEEEEEEeCCCcEEEEEEc
Q 013661 123 SLEGAGIFAVELFWTNNGQILLNEVA 148 (438)
Q Consensus 123 ~lg~~G~~~ve~~~~~~g~~~viEiN 148 (438)
..+..|...++|.++++|.+.-+++-
T Consensus 11 ~~~~~G~v~v~~~I~~~G~v~~~~v~ 36 (79)
T PF03544_consen 11 RRGIEGTVVVEFTIDPDGRVSDVRVI 36 (79)
T ss_dssp HHTEEEEEEEEEEEETTTEEEEEEEE
T ss_pred HCCCeEEEEEEEEEeCCCCEEEEEEE
Confidence 34778999999999999977654443
No 398
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=21.61 E-value=2.7e+02 Score=27.56 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCC-------CCCCCCh-----------hhHHH
Q 013661 308 HRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR-------ASALDGL-----------DSLLS 369 (438)
Q Consensus 308 hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~-------~~~~~g~-----------~~l~s 369 (438)
.++++...+.++.+++.+++.++++.|-...-.-..-.....|||++|-. ....-|+ +.+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i~~ 154 (317)
T cd00763 75 FKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRD 154 (317)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHHHH
Q ss_pred hhhCCCCCceEEEEeCCcchHHHHHHH
Q 013661 370 IVQMPRGVPVATVAINNATNAGLLAVR 396 (438)
Q Consensus 370 ~~~~~~g~p~~tv~~~~~~~Aa~~a~~ 396 (438)
...+...+=+.-+- +.+|+.+|+.
T Consensus 155 ta~s~~rv~ivEvM---GR~~G~LA~~ 178 (317)
T cd00763 155 TSSSHQRISVVEVM---GRHCGDIALA 178 (317)
T ss_pred HHhcCCCEEEEEeC---CCChHHHHHH
No 399
>PRK09019 translation initiation factor Sui1; Validated
Probab=21.56 E-value=4.4e+02 Score=21.67 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=24.0
Q ss_pred EEEEEccCCCHHHHHHHHHHHHH-cCCc--E---EEEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTM-FSVP--H---EVRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~-~G~~--~---~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
|-+|.|=+.+...++++++.|+. +|.- + +..+=+=|| +++.+|+ .+.|+++-.
T Consensus 47 VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~~IelQGD~r--~~v~~~L---~~~Gf~~k~ 105 (108)
T PRK09019 47 VCLITGLDLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKR--DLLKSLL---EAKGMKVKL 105 (108)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcCEEEEcCcHH--HHHHHHH---HHCCCeEEe
Confidence 44444444344445555555532 3322 1 111223355 5566666 455776654
No 400
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.54 E-value=4.2e+02 Score=25.31 Aligned_cols=100 Identities=6% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCCh-HHHHHhHhhhhhcCCeEEEEec--cc--cCcccc---cccCCCCCceEec
Q 013661 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTP-DLMFSYASSAHERGIEIIIAGA--GG--AAHLPG---MVAARTPLPVIGV 354 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~~~~v~s~hr~~-~~~~~~~~~~~~~g~~v~i~~a--g~--~~~l~~---~i~~~~~~pVi~~ 354 (438)
++.+.++.+..++.|+.+.+++..+.|+| +.+.++.+.+.+.|++.+..+- |. ...+.. .+......| |++
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~-i~~ 189 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCD-IEF 189 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCe-EEE
Confidence 56677778888999999999988888886 7788888888888888543221 21 112222 233222222 232
Q ss_pred cCCCCCCCChhhHHHhhhCCCCCceEEEEeC
Q 013661 355 PVRASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 355 p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~ 385 (438)
=. ...-|+.---+..++..|+-..-..++
T Consensus 190 H~--Hn~~Gla~an~~~a~~aG~~~vd~s~~ 218 (262)
T cd07948 190 HG--HNDTGCAIANAYAALEAGATHIDTTVL 218 (262)
T ss_pred EE--CCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 11 122355433466677888777633333
No 401
>PRK15456 universal stress protein UspG; Provisional
Probab=21.43 E-value=3.4e+02 Score=22.53 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=18.9
Q ss_pred cCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 296 FSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 296 ~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.++...+. .++|.+ .+++.+++.+++++|.++
T Consensus 80 ~~~~v~~~v~--~G~~~~--~I~~~a~~~~~DLIVmG~ 113 (142)
T PRK15456 80 DPSRIKQHVR--FGSVRD--EVNELAEELGADVVVIGS 113 (142)
T ss_pred CCcceEEEEc--CCChHH--HHHHHHhhcCCCEEEEcC
Confidence 3445554442 455543 344445677788777655
No 402
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.40 E-value=2.2e+02 Score=27.98 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccc
Q 013661 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
.+..+++.+.|+++++..-.-+ +-..+.+-...+. ++.+++|+-+.+-..|.|++
T Consensus 77 ~~~~~~~~~~l~~~~Id~Li~I-GGdgs~~~a~~L~---e~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 77 EEGRQKAVENLKKLGIEGLVVI-GGDGSYTGAQKLY---EEGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe-CCchHHHHHHHHH---HhhCCCEEeecccccCCCcC
Confidence 3567788888888888855443 3355433222222 22467776666666666664
No 403
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=21.29 E-value=4.5e+02 Score=24.08 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=40.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+-.=...-+...++. ...| ++.+ .+.+...++.+.+...|.++....+. -.+++.+.+.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~----------G~~v-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~ 74 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARA----------GAAV-AIAD--LNQDGANAVADEINKAGGKAIGVAMD-VTNEDAVNAG 74 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHC----------CCeE-EEEe--CChHHHHHHHHHHHhcCceEEEEECC-CCCHHHHHHH
Confidence 4666676655555544444431 2234 2222 33445555555666666443322111 2345555555
Q ss_pred Hhhhh--hcCCeEEEEeccc
Q 013661 318 ASSAH--ERGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~--~~g~~v~i~~ag~ 335 (438)
+...+ ...++++|-++|.
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 75 IDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 54332 1246777777753
No 404
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=21.23 E-value=5.5e+02 Score=23.33 Aligned_cols=46 Identities=9% Similarity=-0.075 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
.+..+.+.++++|+.+... ..+.+++...+.++++..++++.+|..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~~dgii~~ 62 (259)
T cd01542 17 TVKGILAALYENGYQMLLM--NTNFSIEKEIEALELLARQKVDGIILL 62 (259)
T ss_pred HHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444445566677665433 345667666666766666677766554
No 405
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=21.23 E-value=7.5e+02 Score=23.88 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.+|..+|..++++++.+.+. ..++...++++..+-++ ...+..+.+.+++.|+.+. +...+..+++-.+
T Consensus 29 s~~tr~rV~~~a~elgY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~ 106 (343)
T PRK10727 29 SEASRLAVHSAMESLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLL--IGNGYHNEQKERQ 106 (343)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEE--EEeCCCCHHHHHH
Confidence 46777788888777665320 01123457777653222 2233445566778887653 3344667776667
Q ss_pred hHhhhhhcCCeEEEEec
Q 013661 317 YASSAHERGIEIIIAGA 333 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~a 333 (438)
+++.+...+++-+|...
T Consensus 107 ~i~~l~~~~vdgiIi~~ 123 (343)
T PRK10727 107 AIEQLIRHRCAALVVHA 123 (343)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 77777777888666543
No 406
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.17 E-value=6.2e+02 Score=24.45 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHH-HcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc
Q 013661 281 SDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 281 sD~~~~~~~~~~l~-~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
++......++..++ +.|++.-..++.-.++...+.+++..+.+.|++=+.+..|
T Consensus 42 ~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~G 96 (281)
T TIGR00677 42 TTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRG 96 (281)
T ss_pred cchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECC
Confidence 45556666666776 6799988887777888888999998888889985555554
No 407
>PRK12939 short chain dehydrogenase; Provisional
Probab=21.08 E-value=4.3e+02 Score=23.98 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=43.2
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++.+|.+..=....+...++. ...+ ++. +++.+.+.+..+.++..+.++....+.. ..++.+.++
T Consensus 9 ~vlItGa~g~iG~~la~~l~~~----------G~~v-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~ 74 (250)
T PRK12939 9 RALVTGAARGLGAAFAEALAEA----------GATV-AFN--DGLAAEARELAAALEAAGGRAHAIAADL-ADPASVQRF 74 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEccC-CCHHHHHHH
Confidence 4566666555444444443331 2233 333 2345556666666666665544333332 345555555
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-++|.
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 544332 357788877764
No 408
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=3.8e+02 Score=20.34 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHh
Q 013661 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 319 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~ 319 (438)
+.+.=+.+..+.+.|++.|++++...+..+.. ++..++++
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~ 46 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVK 46 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHH
Confidence 34456899999999999999998866654443 44555664
No 409
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=21.04 E-value=4.8e+02 Score=21.54 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
.+.++.+.++..|++++..+.. -++|. ..+++.+++.+++.++.++.+...+..++
T Consensus 66 ~l~~~~~~~~~~~~~~~~~~~~-g~~~~--~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~ 121 (146)
T cd01989 66 LLLPYRCFCSRKGVQCEDVVLE-DDDVA--KAIVEYVADHGITKLVMGASSDNHFSMKF 121 (146)
T ss_pred HHHHHHHHHhhcCCeEEEEEEe-CCcHH--HHHHHHHHHcCCCEEEEeccCCCceeecc
Confidence 4445555556677777666542 12443 23455557778888877764444444433
No 410
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=21.00 E-value=2.7e+02 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=30.7
Q ss_pred EEEEcc-CCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChHHH
Q 013661 274 GIIMGS-DSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLM 314 (438)
Q Consensus 274 ~ii~gs-~sD~~~~~~~~~~l~~-~G~~~~~~v~s~hr~~~~~ 314 (438)
.++.|. ......++.+.+.+++ ++++|+..|+.....|+..
T Consensus 6 Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lA 48 (72)
T cd02978 6 LYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLA 48 (72)
T ss_pred EEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHH
Confidence 466665 4556666677777765 5899999999999999853
No 411
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=20.97 E-value=4.1e+02 Score=20.72 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=26.3
Q ss_pred HcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc
Q 013661 295 MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 295 ~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
..|+++...+. .+.+ .....+..++.++++++.++.....+...+.
T Consensus 67 ~~~~~~~~~~~--~~~~--~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~ 112 (130)
T cd00293 67 EAGVKVETVVL--EGDP--AEAILEAAEELGADLIVMGSRGRSGLRRLLL 112 (130)
T ss_pred cCCCceEEEEe--cCCC--HHHHHHHHHHcCCCEEEEcCCCCCccceeee
Confidence 35777655543 3444 2334444467788888877755555544443
No 412
>PRK14683 hypothetical protein; Provisional
Probab=20.87 E-value=1.8e+02 Score=24.54 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCc-------c-eEEEEEEEEeCCCcEEEEEEcCCC
Q 013661 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
-+++|.+.++.-|| + ....+|++..+++.+.|+||-.|.
T Consensus 19 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDIIa~~~~~lVFVEVKtR~ 65 (122)
T PRK14683 19 GEVLIILFLKCKLYHIIKHRYRCPLGEIDIIAHKNKQLVFIEVKTSL 65 (122)
T ss_pred HHHHHHHHHHHCCCEEEeeecCCCCCcEEEEEEeCCEEEEEEEeecC
Confidence 34566666776665 3 457799998877889999999994
No 413
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.87 E-value=3.2e+02 Score=25.28 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=6.3
Q ss_pred hHhhhhhcCCeEEEE
Q 013661 317 YASSAHERGIEIIIA 331 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~ 331 (438)
.++.+.+.|++|+..
T Consensus 74 ~i~~~~~~~ipvv~~ 88 (271)
T cd06321 74 AVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHHCCCeEEEe
Confidence 333334444554443
No 414
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.71 E-value=4.1e+02 Score=24.42 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++...++..|..+....+. -.+++.+.+.++++.. ..++++|-.+|.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 45 AATLEAAVAALRAAGGAAEALAFD-IADEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 455666666666667555443333 2345555665555433 235677776653
No 415
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=20.69 E-value=2.4e+02 Score=24.30 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCcE----EEEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 286 MKDAAKILTMFSVPH----EVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~----~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
++.+.+.|++.|+.. ..+|.++--.|-....++ +...++.+|+
T Consensus 19 ~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~---~~~~~DavI~ 65 (138)
T TIGR00114 19 LKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLA---ETGKYDAVIA 65 (138)
T ss_pred HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHH---hcCCCCEEEE
Confidence 445567889999873 355666666666444444 3445776665
No 416
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.58 E-value=4.3e+02 Score=24.68 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=41.6
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+..=-...+.+.++. ...| ++.+ .+.+..+++.+.++..|..+..-.+. -..++.+.+.
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~ 77 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARA----------GAKV-AILD--RNQEKAEAVVAEIKAAGGEALAVKAD-VLDKESLEQA 77 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHH
Confidence 4566676554444444443321 2234 3332 33455666666666666543322222 2334555555
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++...+ ..++++|-.+|.
T Consensus 78 ~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 78 RQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 544332 357788877763
No 417
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=20.39 E-value=5.4e+02 Score=23.54 Aligned_cols=18 Identities=28% Similarity=0.073 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 013661 281 SDLPVMKDAAKILTMFSV 298 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~ 298 (438)
.|.....+..+.|...++
T Consensus 39 ~~~~~~~~~~~~l~~~~v 56 (268)
T cd06273 39 YDLDREYAQARKLLERGV 56 (268)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 333333344444444433
No 418
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=20.38 E-value=2.1e+02 Score=24.65 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=51.7
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec---cccCcccccccCCCCCceEe
Q 013661 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMVAARTPLPVIG 353 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i~~~~~~pVi~ 353 (438)
.|+.+-.+....+.+.-.++|++++..=+. |- .++.+|+.++.+.+..++|=.+ -.|=+|.+.+++- ..|||-
T Consensus 22 YG~~Tl~di~~~~~~~a~~~g~~v~~~QSN-~E--g~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av-~iP~vE 97 (146)
T COG0757 22 YGSTTLEDIEADLEEEAAKLGVEVEFRQSN-HE--GELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAV-SIPVVE 97 (146)
T ss_pred cCcccHHHHHHHHHHHHHHcCceEEEEecC-ch--HHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhc-CCCEEE
Confidence 777766566666666778899998877544 33 3588999888776532444222 2344677888764 489998
Q ss_pred ccCC
Q 013661 354 VPVR 357 (438)
Q Consensus 354 ~p~~ 357 (438)
|=.+
T Consensus 98 VHlS 101 (146)
T COG0757 98 VHLS 101 (146)
T ss_pred EEec
Confidence 8765
No 419
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=20.37 E-value=7.1e+02 Score=24.10 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChH-HHHHhHhhhhh
Q 013661 245 SMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPD-LMFSYASSAHE 323 (438)
Q Consensus 245 ~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~-~~~~~~~~~~~ 323 (438)
|.++.=.++.+.+...+. |..- |- .-..+.|+.+|++.- ..|.|-+.+ +...++...-+
T Consensus 16 Nl~Dit~Ral~~L~~~D~------------iaaE---DT---R~t~~LL~~~~I~~~--~is~h~hne~~~~~~li~~l~ 75 (275)
T COG0313 16 NLADITLRALEVLKEVDV------------IAAE---DT---RVTRKLLSHLGIKTP--LISYHEHNEKEKLPKLIPLLK 75 (275)
T ss_pred ChHhcCHHHHHHHhhCCE------------EEEe---cc---HHHHHHHHHhCCCCc--eecccCCcHHHHHHHHHHHHh
Confidence 555666666666665542 3431 22 234557788888755 557784433 33334433333
Q ss_pred cCCeEE-EEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcC
Q 013661 324 RGIEII-IAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF 400 (438)
Q Consensus 324 ~g~~v~-i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~ 400 (438)
.|-.|- |-=|| .|. | +.. |.. |=..+...||+|..+. |.+|++.|+-.-++
T Consensus 76 ~g~~valVSDAG----~P~----------I-----SDP--G~~--LV~~a~~~gi~V~~lP---G~sA~~tAL~~SGl 127 (275)
T COG0313 76 KGKSVALVSDAG----TPL----------I-----SDP--GYE--LVRAAREAGIRVVPLP---GPSALITALSASGL 127 (275)
T ss_pred cCCeEEEEecCC----CCc----------c-----cCc--cHH--HHHHHHHcCCcEEecC---CccHHHHHHHHcCC
Confidence 453332 22222 222 2 222 554 5566667888888776 77888888766444
No 420
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.35 E-value=4.3e+02 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=15.6
Q ss_pred CChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 309 RTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 309 r~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+++.+.++++++.+ ..++++|-.||.
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 69 LDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 345556666655432 346777777764
No 421
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=20.26 E-value=6.1e+02 Score=22.42 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCeEEEEEccCCCHHH-HHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc
Q 013661 270 LPRIGIIMGSDSDLPV-MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~-~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
..++ +|.|.. +. ...+++.|.+.|..+.+. +|+.+++.+.++ .++++|.+.|..
T Consensus 44 gk~v-lViG~G---~~~G~~~a~~L~~~g~~V~v~----~r~~~~l~~~l~-----~aDiVIsat~~~ 98 (168)
T cd01080 44 GKKV-VVVGRS---NIVGKPLAALLLNRNATVTVC----HSKTKNLKEHTK-----QADIVIVAVGKP 98 (168)
T ss_pred CCEE-EEECCc---HHHHHHHHHHHhhCCCEEEEE----ECCchhHHHHHh-----hCCEEEEcCCCC
Confidence 3455 555553 33 455888999999864444 788777776663 368888777543
No 422
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=20.25 E-value=81 Score=23.75 Aligned_cols=20 Identities=5% Similarity=0.056 Sum_probs=18.3
Q ss_pred EEEEcCCHHHHHHHHHHHhh
Q 013661 239 ITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~ 258 (438)
+...|+|.+||++++..++.
T Consensus 26 c~s~G~T~eea~~n~~eai~ 45 (73)
T COG1598 26 CHSQGETLEEALQNAKEAIE 45 (73)
T ss_pred ccccCCCHHHHHHHHHHHHH
Confidence 67799999999999999977
No 423
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=20.24 E-value=3.2e+02 Score=24.96 Aligned_cols=55 Identities=22% Similarity=0.099 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEcc--CCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs--~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
.++..+++.|..++...+.. ....|.+|+|| +.|-....+..+.|++.++.+.+-
T Consensus 80 ~SLqN~Le~A~~~L~~~p~~-----~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI 136 (193)
T PF04056_consen 80 PSLQNGLEMARSSLKHMPSH-----GSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVI 136 (193)
T ss_pred hhHHHHHHHHHHHHhhCccc-----cceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEE
Confidence 57888888888888765531 23467777775 557778888889999998887655
No 424
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.16 E-value=5.3e+02 Score=24.72 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEe--cCC-CChHHHHHhHhhhhhcCCeE
Q 013661 279 SDSDLPVMKDAAKILTMFSVPHEVRIV--SAH-RTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~~~~v~--s~h-r~~~~~~~~~~~~~~~g~~v 328 (438)
..+|.+.+.++.+..++.|..+...+. ... -+|+.+.++.+.+.+.|++.
T Consensus 113 ~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (275)
T cd07937 113 ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS 165 (275)
T ss_pred cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 445556666666666666655444331 112 23455555555555555553
No 425
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=20.15 E-value=2.7e+02 Score=26.17 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCeEEEE-Ecc--CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc
Q 013661 270 LPRIGII-MGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~ii-~gs--~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
.++|++| +.| .+.........+.++++|+.+. ..|. ++...+.+ . .++++.+..|..-.|...+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~----~l~~-~~d~~~~l---~--~ad~I~v~GGnt~~l~~~l 97 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT----GIHR-VADPVAAI---E--NAEAIFVGGGNTFQLLKQL 97 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE----Eecc-chhhHHHH---h--cCCEEEECCccHHHHHHHH
Confidence 3567677 333 2234557778888999998743 2243 22222223 2 3666666555444444444
No 426
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.08 E-value=7.2e+02 Score=23.22 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
-++.+.+.|+.+||++.+. -..+.+++.+.++++
T Consensus 31 D~~~l~~~f~~lgF~V~~~---~dlt~~em~~~l~~~ 64 (241)
T smart00115 31 DAENLTELFQSLGYEVHVK---NNLTAEEMLEELKEF 64 (241)
T ss_pred HHHHHHHHHHHCCCEEEEe---cCCCHHHHHHHHHHH
Confidence 5677777888888876544 144545555555444
Done!