Query 013661
Match_columns 438
No_of_seqs 387 out of 3570
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4v_A Phosphoribosylaminoimid 100.0 1.9E-50 6.5E-55 352.9 15.7 168 270-437 13-180 (183)
2 3lp6_A Phosphoribosylaminoimid 100.0 4.7E-50 1.6E-54 348.3 15.0 165 269-433 6-170 (174)
3 3trh_A Phosphoribosylaminoimid 100.0 7.9E-49 2.7E-53 339.0 16.5 161 269-429 5-167 (169)
4 3ors_A N5-carboxyaminoimidazol 100.0 4.8E-49 1.6E-53 339.0 13.1 158 270-427 3-162 (163)
5 1xmp_A PURE, phosphoribosylami 100.0 2.2E-48 7.4E-53 336.0 14.6 157 270-426 11-169 (170)
6 4b4k_A N5-carboxyaminoimidazol 100.0 1E-47 3.4E-52 333.9 16.0 156 270-425 22-179 (181)
7 3kuu_A Phosphoribosylaminoimid 100.0 5.8E-48 2E-52 334.6 12.2 157 269-425 11-169 (174)
8 1u11_A PURE (N5-carboxyaminoim 100.0 6.9E-48 2.4E-52 336.4 10.5 159 270-428 21-181 (182)
9 3oow_A Phosphoribosylaminoimid 100.0 1.3E-47 4.5E-52 330.5 12.0 156 270-425 5-162 (166)
10 2ywx_A Phosphoribosylaminoimid 100.0 1.1E-46 3.8E-51 322.4 15.3 153 273-429 2-154 (157)
11 4grd_A N5-CAIR mutase, phospho 100.0 9.2E-47 3.2E-51 326.2 14.7 153 269-421 11-165 (173)
12 3rg8_A Phosphoribosylaminoimid 100.0 1.9E-46 6.6E-51 322.6 15.3 155 271-428 3-158 (159)
13 3k5i_A Phosphoribosyl-aminoimi 100.0 5.2E-40 1.8E-44 333.8 28.6 250 5-261 148-399 (403)
14 3eth_A Phosphoribosylaminoimid 100.0 9.5E-40 3.2E-44 325.5 28.3 240 2-261 99-340 (355)
15 4e4t_A Phosphoribosylaminoimid 100.0 8.3E-39 2.8E-43 326.3 30.9 252 2-261 153-415 (419)
16 3q2o_A Phosphoribosylaminoimid 100.0 1.5E-38 5.1E-43 321.6 30.0 246 2-259 132-378 (389)
17 3orq_A N5-carboxyaminoimidazol 100.0 3E-38 1E-42 318.2 25.9 239 3-255 131-371 (377)
18 2h31_A Multifunctional protein 100.0 2E-39 6.8E-44 322.6 15.1 176 244-430 247-423 (425)
19 1a9x_A Carbamoyl phosphate syn 100.0 5.3E-37 1.8E-41 345.1 26.4 362 2-414 694-1070(1073)
20 3aw8_A PURK, phosphoribosylami 100.0 1.1E-33 3.7E-38 283.9 31.0 245 2-261 116-361 (369)
21 3ax6_A Phosphoribosylaminoimid 100.0 2.6E-33 8.8E-38 282.2 25.3 244 3-261 121-369 (380)
22 3jrx_A Acetyl-COA carboxylase 100.0 4.3E-33 1.5E-37 292.7 24.7 286 3-305 230-552 (587)
23 1kjq_A GART 2, phosphoribosylg 100.0 1.8E-32 6E-37 276.9 27.4 250 3-261 134-388 (391)
24 3ouz_A Biotin carboxylase; str 100.0 2.3E-32 7.9E-37 281.1 28.1 282 2-301 141-439 (446)
25 3glk_A Acetyl-COA carboxylase 100.0 6.9E-33 2.4E-37 290.0 24.0 285 3-304 214-535 (540)
26 2dwc_A PH0318, 433AA long hypo 100.0 3E-32 1E-36 279.1 27.4 254 3-262 142-413 (433)
27 2z04_A Phosphoribosylaminoimid 100.0 2.1E-32 7.3E-37 273.9 23.9 243 6-262 115-357 (365)
28 1ulz_A Pyruvate carboxylase N- 100.0 1.4E-30 4.9E-35 268.0 28.5 287 2-305 136-440 (451)
29 2vpq_A Acetyl-COA carboxylase; 100.0 1.8E-30 6.1E-35 267.3 28.8 285 2-303 136-439 (451)
30 3u9t_A MCC alpha, methylcroton 100.0 2.4E-32 8.4E-37 292.8 14.7 286 3-304 164-467 (675)
31 3n6r_A Propionyl-COA carboxyla 100.0 1.3E-31 4.4E-36 287.5 17.7 284 3-303 138-459 (681)
32 2w70_A Biotin carboxylase; lig 100.0 2.3E-29 8E-34 258.8 28.5 282 2-302 137-437 (449)
33 3va7_A KLLA0E08119P; carboxyla 100.0 3E-29 1E-33 282.2 27.3 347 3-381 166-531 (1236)
34 2dzd_A Pyruvate carboxylase; b 100.0 3.4E-28 1.2E-32 251.0 31.7 282 2-301 142-448 (461)
35 1vkz_A Phosphoribosylamine--gl 100.0 7.2E-29 2.4E-33 252.5 25.0 251 2-262 126-401 (412)
36 1w96_A ACC, acetyl-coenzyme A 100.0 4.5E-28 1.5E-32 255.5 31.7 283 3-300 220-545 (554)
37 3hbl_A Pyruvate carboxylase; T 100.0 1.2E-29 4.2E-34 284.7 18.7 285 2-304 140-449 (1150)
38 3vot_A L-amino acid ligase, BL 100.0 1.3E-28 4.6E-33 251.4 23.5 251 3-262 133-413 (425)
39 2qf7_A Pyruvate carboxylase pr 100.0 4.9E-29 1.7E-33 280.4 22.2 287 3-306 157-469 (1165)
40 4dim_A Phosphoribosylglycinami 100.0 3.5E-27 1.2E-31 239.0 27.3 250 2-261 129-399 (403)
41 2yw2_A Phosphoribosylamine--gl 100.0 1.7E-26 5.7E-31 235.7 29.1 255 2-262 122-405 (424)
42 2ip4_A PURD, phosphoribosylami 100.0 1.5E-26 5.2E-31 235.6 27.2 255 2-262 121-398 (417)
43 2qk4_A Trifunctional purine bi 100.0 3.5E-26 1.2E-30 235.4 28.5 253 2-262 148-434 (452)
44 3lp8_A Phosphoribosylamine-gly 100.0 4.8E-26 1.6E-30 233.6 29.4 256 2-262 143-428 (442)
45 1a9x_A Carbamoyl phosphate syn 99.9 1.9E-27 6.3E-32 267.6 19.3 243 2-258 148-403 (1073)
46 2yrx_A Phosphoribosylglycinami 99.9 5.7E-26 1.9E-30 233.8 26.7 249 2-262 143-424 (451)
47 3mjf_A Phosphoribosylamine--gl 99.9 1.5E-25 5E-30 229.3 27.7 256 2-262 127-413 (431)
48 2xcl_A Phosphoribosylamine--gl 99.9 2.6E-25 9E-30 226.7 28.9 253 2-262 122-403 (422)
49 4ffl_A PYLC; amino acid, biosy 99.9 2.8E-26 9.6E-31 229.4 19.1 226 16-261 124-356 (363)
50 4fu0_A D-alanine--D-alanine li 99.9 1.8E-22 6.2E-27 201.5 21.8 145 6-154 166-320 (357)
51 3vmm_A Alanine-anticapsin liga 99.9 1.3E-22 4.4E-27 209.6 18.2 181 2-184 159-367 (474)
52 1ehi_A LMDDL2, D-alanine:D-lac 99.9 8.4E-22 2.9E-26 198.0 21.2 164 9-175 166-352 (377)
53 3tqt_A D-alanine--D-alanine li 99.9 2.1E-21 7.2E-26 194.5 20.9 142 9-154 171-324 (372)
54 3k3p_A D-alanine--D-alanine li 99.9 1.1E-21 3.7E-26 197.3 18.7 144 7-154 191-344 (383)
55 3e5n_A D-alanine-D-alanine lig 99.9 9.7E-22 3.3E-26 198.1 18.2 146 8-155 189-343 (386)
56 2i87_A D-alanine-D-alanine lig 99.9 2.3E-21 7.7E-26 194.0 19.4 142 8-154 162-314 (364)
57 1e4e_A Vancomycin/teicoplanin 99.9 3.8E-21 1.3E-25 190.7 20.1 137 14-154 162-313 (343)
58 3lwb_A D-alanine--D-alanine li 99.9 2.9E-21 1E-25 193.7 19.3 140 11-154 182-338 (373)
59 4eg0_A D-alanine--D-alanine li 99.9 2.2E-21 7.7E-26 190.3 17.3 149 4-154 129-287 (317)
60 3i12_A D-alanine-D-alanine lig 99.9 3.1E-21 1.1E-25 193.0 18.1 143 8-154 170-323 (364)
61 3se7_A VANA; alpha-beta struct 99.9 7.6E-21 2.6E-25 188.9 20.0 139 12-154 160-313 (346)
62 2pn1_A Carbamoylphosphate synt 99.9 9.8E-21 3.3E-25 186.4 20.2 163 5-181 135-301 (331)
63 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 8.8E-21 3E-25 184.3 19.2 155 12-174 133-302 (306)
64 2pvp_A D-alanine-D-alanine lig 99.9 2.8E-21 9.7E-26 193.4 14.5 161 8-179 177-349 (367)
65 2fb9_A D-alanine:D-alanine lig 99.9 2.5E-20 8.5E-25 183.3 20.5 137 15-154 148-293 (322)
66 3r5x_A D-alanine--D-alanine li 99.8 2.4E-20 8.3E-25 181.7 14.7 138 12-155 128-272 (307)
67 1uc8_A LYSX, lysine biosynthes 99.8 1.5E-19 5.3E-24 173.0 11.4 161 3-177 109-278 (280)
68 3df7_A Putative ATP-grAsp supe 99.8 1.7E-18 5.9E-23 168.9 16.5 140 15-173 131-271 (305)
69 2r85_A PURP protein PF1517; AT 99.8 2.2E-17 7.6E-22 162.2 18.0 137 15-153 124-290 (334)
70 2r7k_A 5-formaminoimidazole-4- 99.7 1.8E-17 6.2E-22 164.8 13.8 137 15-153 148-317 (361)
71 2pbz_A Hypothetical protein; N 99.6 1.9E-16 6.6E-21 154.7 5.6 131 15-153 123-271 (320)
72 1wr2_A Hypothetical protein PH 99.6 1.8E-15 6E-20 142.3 4.9 148 2-152 41-218 (238)
73 1gsa_A Glutathione synthetase; 99.5 4.7E-14 1.6E-18 137.0 13.1 155 3-175 141-310 (316)
74 1z2n_X Inositol 1,3,4-trisphos 99.5 9.4E-14 3.2E-18 136.0 12.2 139 3-156 119-304 (324)
75 3ln6_A Glutathione biosynthesi 99.5 3.5E-14 1.2E-18 153.3 8.1 164 3-174 505-746 (750)
76 3ln7_A Glutathione biosynthesi 99.5 9.7E-14 3.3E-18 149.6 9.9 166 3-174 510-752 (757)
77 1i7n_A Synapsin II; synapse, p 99.4 8.1E-13 2.8E-17 128.1 10.7 134 11-153 146-284 (309)
78 2p0a_A Synapsin-3, synapsin II 99.4 2E-12 6.7E-17 127.0 13.2 152 12-174 164-320 (344)
79 1pk8_A RAT synapsin I; ATP bin 99.4 2.9E-12 1E-16 128.0 13.9 151 12-173 259-414 (422)
80 2q7d_A Inositol-tetrakisphosph 99.2 1.6E-10 5.3E-15 114.3 15.7 136 7-156 150-316 (346)
81 2cqy_A Propionyl-COA carboxyla 99.2 2.2E-11 7.5E-16 99.2 6.4 72 2-74 30-107 (108)
82 2yvq_A Carbamoyl-phosphate syn 99.2 6.6E-12 2.3E-16 108.2 2.5 121 240-381 1-130 (143)
83 2nu8_B SCS-beta, succinyl-COA 99.1 9E-11 3.1E-15 117.6 8.1 141 2-152 24-203 (388)
84 2fp4_B Succinyl-COA ligase [GD 99.0 7.4E-10 2.5E-14 111.0 7.9 141 2-152 24-210 (395)
85 1b93_A Protein (methylglyoxal 98.6 1.4E-08 5E-13 87.2 2.2 100 269-381 10-118 (152)
86 1vmd_A MGS, methylglyoxal synt 98.5 1.7E-08 5.8E-13 88.5 1.2 100 269-381 26-134 (178)
87 3t7a_A Inositol pyrophosphate 98.5 8.3E-08 2.8E-12 91.3 4.4 130 14-153 142-292 (330)
88 2xw6_A MGS, methylglyoxal synt 98.4 4E-08 1.4E-12 82.8 0.5 108 272-395 5-122 (134)
89 3ufx_B Succinyl-COA synthetase 98.4 9.8E-07 3.4E-11 88.4 10.2 76 2-78 24-109 (397)
90 3tig_A TTL protein; ATP-grAsp, 98.1 2.1E-05 7.2E-10 77.7 12.9 151 17-176 147-359 (380)
91 3mwd_A ATP-citrate synthase; A 96.7 0.0045 1.5E-07 62.2 9.5 81 4-85 38-135 (425)
92 3pff_A ATP-citrate synthase; p 95.8 0.018 6.2E-07 62.3 8.2 81 4-85 38-135 (829)
93 3uhj_A Probable glycerol dehyd 94.4 0.03 1E-06 55.6 4.5 86 271-357 53-139 (387)
94 1jq5_A Glycerol dehydrogenase; 93.4 0.04 1.4E-06 54.3 3.3 87 271-357 32-119 (370)
95 2q5c_A NTRC family transcripti 93.2 1.1 3.8E-05 39.7 12.3 129 270-414 4-140 (196)
96 3ce9_A Glycerol dehydrogenase; 92.6 0.084 2.9E-06 51.6 4.2 86 271-357 35-121 (354)
97 1ta9_A Glycerol dehydrogenase; 92.1 0.1 3.4E-06 52.9 4.2 85 272-357 93-178 (450)
98 3ox4_A Alcohol dehydrogenase 2 91.8 0.16 5.3E-06 50.3 5.2 87 271-357 32-139 (383)
99 3bfj_A 1,3-propanediol oxidore 91.8 0.12 4.2E-06 51.1 4.4 87 271-357 34-143 (387)
100 3okf_A 3-dehydroquinate syntha 91.8 0.3 1E-05 48.4 7.1 87 271-357 63-158 (390)
101 1o2d_A Alcohol dehydrogenase, 91.3 0.26 9E-06 48.4 6.1 87 271-357 41-149 (371)
102 3hl0_A Maleylacetate reductase 91.3 0.073 2.5E-06 52.1 2.0 86 271-358 35-121 (353)
103 1sg6_A Pentafunctional AROM po 91.2 0.21 7.2E-06 49.6 5.3 87 271-357 37-140 (393)
104 3jzd_A Iron-containing alcohol 90.5 0.091 3.1E-06 51.6 1.9 85 271-357 37-122 (358)
105 1vlj_A NADH-dependent butanol 88.8 0.42 1.4E-05 47.6 5.3 86 271-357 44-152 (407)
106 1rrm_A Lactaldehyde reductase; 88.6 0.19 6.6E-06 49.6 2.6 87 271-357 32-141 (386)
107 2pju_A Propionate catabolism o 87.1 13 0.00044 33.6 13.7 115 288-414 27-152 (225)
108 2gru_A 2-deoxy-scyllo-inosose 85.9 1.6 5.5E-05 42.7 7.5 86 271-357 35-129 (368)
109 3n6x_A Putative glutathionylsp 85.8 0.72 2.5E-05 46.7 5.0 61 3-65 349-411 (474)
110 3qbe_A 3-dehydroquinate syntha 85.6 0.76 2.6E-05 45.1 4.9 86 271-357 44-138 (368)
111 1xah_A Sadhqs, 3-dehydroquinat 85.4 0.59 2E-05 45.5 4.1 85 272-358 33-126 (354)
112 1oj7_A Hypothetical oxidoreduc 82.8 0.75 2.6E-05 45.7 3.6 84 271-357 51-160 (408)
113 1ujn_A Dehydroquinate synthase 81.8 1.1 3.7E-05 43.6 4.2 83 271-357 29-119 (348)
114 1kq3_A Glycerol dehydrogenase; 75.1 0.31 1.1E-05 48.0 -2.1 84 271-357 42-127 (376)
115 3clh_A 3-dehydroquinate syntha 74.8 0.65 2.2E-05 45.1 0.2 50 308-357 65-120 (343)
116 4fn4_A Short chain dehydrogena 72.4 11 0.00036 34.7 7.9 55 280-335 38-94 (254)
117 1v95_A Nuclear receptor coacti 71.7 7.2 0.00025 32.1 5.8 59 272-333 10-68 (130)
118 3iv7_A Alcohol dehydrogenase I 70.3 2.4 8.4E-05 41.3 3.1 52 307-358 70-122 (364)
119 3rf7_A Iron-containing alcohol 67.0 2.9 9.9E-05 41.0 2.9 83 272-357 55-160 (375)
120 1g8m_A Aicar transformylase-IM 65.7 2.8 9.6E-05 43.0 2.5 49 270-332 5-53 (593)
121 3kke_A LACI family transcripti 65.4 81 0.0028 28.7 13.1 81 270-354 15-100 (303)
122 3kjx_A Transcriptional regulat 65.2 74 0.0025 29.6 12.6 86 246-333 38-132 (344)
123 2l69_A Rossmann 2X3 fold prote 64.8 44 0.0015 25.4 10.5 75 244-331 33-107 (134)
124 1mjh_A Protein (ATP-binding do 63.9 25 0.00085 28.8 8.0 68 285-356 84-159 (162)
125 2lci_A Protein OR36; structura 63.3 47 0.0016 25.3 11.3 75 244-331 33-107 (134)
126 4g81_D Putative hexonate dehyd 60.8 15 0.00051 33.7 6.4 55 280-335 40-96 (255)
127 4ehi_A Bifunctional purine bio 60.4 4.2 0.00015 41.2 2.7 47 274-333 27-73 (534)
128 3idf_A USP-like protein; unive 59.6 34 0.0012 27.0 7.8 54 284-343 66-119 (138)
129 3dbi_A Sugar-binding transcrip 58.7 68 0.0023 29.7 11.0 62 270-333 61-127 (338)
130 3zzm_A Bifunctional purine bio 58.3 4.3 0.00015 41.1 2.3 48 273-333 12-59 (523)
131 3loq_A Universal stress protei 58.0 42 0.0014 30.6 9.2 82 272-357 200-291 (294)
132 3l6u_A ABC-type sugar transpor 57.6 1.1E+02 0.0036 27.4 12.0 83 270-354 8-95 (293)
133 1jx6_A LUXP protein; protein-l 56.8 60 0.0021 30.1 10.2 85 247-331 16-110 (342)
134 2pjk_A 178AA long hypothetical 56.6 67 0.0023 27.5 9.6 85 287-378 43-131 (178)
135 3s3t_A Nucleotide-binding prot 56.2 19 0.00065 28.9 5.7 55 284-342 69-125 (146)
136 3lft_A Uncharacterized protein 54.3 37 0.0013 31.0 8.1 69 285-355 19-90 (295)
137 1x60_A Sporulation-specific N- 52.7 57 0.0019 23.5 7.3 26 274-299 11-36 (79)
138 2x5n_A SPRPN10, 26S proteasome 52.0 1.1E+02 0.0039 26.2 10.4 74 243-320 83-158 (192)
139 1qpz_A PURA, protein (purine n 51.3 66 0.0023 29.9 9.5 106 247-354 29-144 (340)
140 1tq8_A Hypothetical protein RV 51.3 27 0.00091 29.1 6.0 71 283-357 80-159 (163)
141 2gm3_A Unknown protein; AT3G01 50.7 28 0.00095 29.0 6.1 69 285-357 88-164 (175)
142 2dum_A Hypothetical protein PH 50.4 33 0.0011 28.4 6.5 69 285-357 79-157 (170)
143 4b4t_W RPN10, 26S proteasome r 49.9 1.1E+02 0.0038 28.1 10.4 76 243-322 84-162 (268)
144 3l49_A ABC sugar (ribose) tran 49.2 1.1E+02 0.0037 27.3 10.4 83 270-354 5-92 (291)
145 3rfq_A Pterin-4-alpha-carbinol 47.8 35 0.0012 29.6 6.3 96 270-378 30-136 (185)
146 3lkv_A Uncharacterized conserv 46.7 38 0.0013 31.3 6.9 83 270-354 8-96 (302)
147 4fs3_A Enoyl-[acyl-carrier-pro 46.6 29 0.001 31.4 5.9 52 283-335 42-96 (256)
148 3dlo_A Universal stress protei 46.6 66 0.0022 26.3 7.7 56 284-341 78-133 (155)
149 2i0f_A 6,7-dimethyl-8-ribityll 46.1 76 0.0026 26.7 7.9 61 271-331 13-79 (157)
150 1zcz_A Bifunctional purine bio 43.8 11 0.00037 37.4 2.5 46 277-333 17-62 (464)
151 3h7a_A Short chain dehydrogena 43.3 61 0.0021 29.0 7.5 54 281-335 39-93 (252)
152 2qv7_A Diacylglycerol kinase D 42.0 21 0.00072 33.9 4.3 71 284-358 42-116 (337)
153 3ucx_A Short chain dehydrogena 41.7 68 0.0023 28.8 7.6 55 281-336 43-99 (264)
154 3qiv_A Short-chain dehydrogena 41.7 88 0.003 27.6 8.3 83 239-335 12-96 (253)
155 3sju_A Keto reductase; short-c 41.0 70 0.0024 29.1 7.7 85 238-336 26-112 (279)
156 2qh8_A Uncharacterized protein 40.9 47 0.0016 30.4 6.5 81 271-354 9-96 (302)
157 3tjr_A Short chain dehydrogena 39.1 83 0.0028 29.0 7.9 85 238-336 33-119 (301)
158 3sr3_A Microcin immunity prote 39.1 58 0.002 31.0 6.9 100 270-376 13-129 (336)
159 4h1h_A LMO1638 protein; MCCF-l 38.9 77 0.0026 30.0 7.7 83 270-353 12-112 (327)
160 3tla_A MCCF; serine protease, 38.8 57 0.0019 31.6 6.8 85 269-353 42-143 (371)
161 3ff4_A Uncharacterized protein 38.4 53 0.0018 26.3 5.5 31 271-301 5-35 (122)
162 2jah_A Clavulanic acid dehydro 38.2 95 0.0032 27.5 7.9 84 238-335 9-94 (247)
163 3h5o_A Transcriptional regulat 37.6 1.1E+02 0.0039 28.2 8.7 61 271-333 63-126 (339)
164 3egc_A Putative ribose operon 37.3 2.2E+02 0.0076 25.2 15.5 83 269-354 7-93 (291)
165 3brs_A Periplasmic binding pro 37.2 2.2E+02 0.0075 25.1 11.2 85 270-354 5-96 (289)
166 4g85_A Histidine-tRNA ligase, 37.1 1.6E+02 0.0055 29.6 10.3 58 271-332 420-477 (517)
167 1jeo_A MJ1247, hypothetical pr 37.0 1.1E+02 0.0039 25.4 7.9 57 275-331 44-115 (180)
168 3gbv_A Putative LACI-family tr 36.9 1.7E+02 0.0057 26.1 9.6 85 270-354 8-100 (304)
169 3tfo_A Putative 3-oxoacyl-(acy 36.5 85 0.0029 28.4 7.4 85 238-336 6-92 (264)
170 3g80_A Protein B2; RNA-binding 36.4 78 0.0027 23.7 5.5 48 389-436 42-93 (97)
171 3mt0_A Uncharacterized protein 36.1 2.2E+02 0.0076 25.5 10.3 102 244-357 18-129 (290)
172 1uta_A FTSN, MSGA, cell divisi 36.0 28 0.00094 25.5 3.2 53 275-328 12-73 (81)
173 3v8b_A Putative dehydrogenase, 35.9 1E+02 0.0034 28.1 7.9 84 239-336 31-116 (283)
174 1ae1_A Tropinone reductase-I; 35.6 1.1E+02 0.0036 27.6 7.9 84 238-335 23-109 (273)
175 2bon_A Lipid kinase; DAG kinas 35.6 1.1E+02 0.0037 28.8 8.2 71 284-358 44-120 (332)
176 1m3s_A Hypothetical protein YC 35.4 1.1E+02 0.0036 25.7 7.5 78 275-357 41-133 (186)
177 4e5s_A MCCFLIKE protein (BA_56 35.4 92 0.0031 29.6 7.6 100 269-376 11-128 (331)
178 3m9w_A D-xylose-binding peripl 35.3 2.5E+02 0.0085 25.3 14.8 82 271-354 3-89 (313)
179 2ae2_A Protein (tropinone redu 35.3 1.1E+02 0.0039 27.1 8.0 83 239-335 12-97 (260)
180 3lyl_A 3-oxoacyl-(acyl-carrier 35.0 1E+02 0.0035 27.0 7.6 54 281-335 37-92 (247)
181 1zem_A Xylitol dehydrogenase; 34.9 1.1E+02 0.0039 27.2 7.9 54 281-335 39-94 (262)
182 2prs_A High-affinity zinc upta 34.6 1.1E+02 0.0036 28.2 7.8 62 293-354 188-252 (284)
183 3bil_A Probable LACI-family tr 34.5 2.7E+02 0.0092 25.7 10.9 61 271-333 67-130 (348)
184 3gyb_A Transcriptional regulat 34.2 2.2E+02 0.0076 25.0 9.9 78 270-354 5-85 (280)
185 3o1i_D Periplasmic protein TOR 34.2 2.3E+02 0.0079 25.2 10.1 83 270-354 5-93 (304)
186 4fgs_A Probable dehydrogenase 34.0 74 0.0025 29.3 6.5 83 234-335 29-113 (273)
187 3imf_A Short chain dehydrogena 33.6 88 0.003 27.9 6.9 54 281-335 38-93 (257)
188 3rkr_A Short chain oxidoreduct 33.6 1E+02 0.0035 27.5 7.4 84 238-335 31-116 (262)
189 3h75_A Periplasmic sugar-bindi 33.4 2.9E+02 0.0098 25.4 12.6 82 270-354 3-92 (350)
190 2rhc_B Actinorhodin polyketide 33.3 1.2E+02 0.0042 27.3 8.0 84 238-335 24-109 (277)
191 1dbq_A Purine repressor; trans 33.3 1.2E+02 0.0042 26.9 8.0 83 270-354 7-93 (289)
192 3g1w_A Sugar ABC transporter; 32.9 2.6E+02 0.0091 24.8 10.6 84 270-354 4-92 (305)
193 3gaf_A 7-alpha-hydroxysteroid 32.9 1.1E+02 0.0036 27.4 7.4 55 281-336 44-100 (256)
194 3fg9_A Protein of universal st 32.6 1.2E+02 0.0041 24.2 7.1 49 284-335 79-129 (156)
195 3jvd_A Transcriptional regulat 32.4 2.9E+02 0.01 25.2 13.1 76 270-354 64-142 (333)
196 3ksm_A ABC-type sugar transpor 32.4 2E+02 0.0068 25.1 9.2 49 285-333 18-67 (276)
197 3iwt_A 178AA long hypothetical 32.3 2E+02 0.007 24.0 8.8 69 270-341 15-97 (178)
198 2xhz_A KDSD, YRBH, arabinose 5 32.3 2.1E+02 0.0073 23.6 9.4 51 301-356 99-149 (183)
199 4ibo_A Gluconate dehydrogenase 31.7 88 0.003 28.3 6.6 55 280-335 57-113 (271)
200 3o74_A Fructose transport syst 31.4 2.6E+02 0.0089 24.3 11.5 61 271-333 3-66 (272)
201 3l77_A Short-chain alcohol deh 31.1 1.3E+02 0.0045 26.0 7.6 54 281-335 34-90 (235)
202 3pk0_A Short-chain dehydrogena 31.1 1.1E+02 0.0038 27.3 7.2 54 281-335 42-98 (262)
203 3r1i_A Short-chain type dehydr 31.1 94 0.0032 28.2 6.7 84 238-335 34-119 (276)
204 2dgd_A 223AA long hypothetical 30.7 95 0.0032 27.2 6.5 62 271-334 109-181 (223)
205 3tox_A Short chain dehydrogena 30.4 96 0.0033 28.2 6.7 55 280-335 39-95 (280)
206 2hsg_A Glucose-resistance amyl 30.2 3.1E+02 0.011 24.9 12.7 106 246-354 30-145 (332)
207 3sho_A Transcriptional regulat 30.1 2.4E+02 0.0081 23.4 10.6 29 302-330 91-119 (187)
208 3miz_A Putative transcriptiona 29.9 3E+02 0.01 24.5 13.7 82 270-354 13-98 (301)
209 3ksu_A 3-oxoacyl-acyl carrier 29.9 2.9E+02 0.01 24.4 10.5 63 272-335 37-101 (262)
210 3k9c_A Transcriptional regulat 29.8 3E+02 0.01 24.4 11.6 79 270-354 12-94 (289)
211 3k4h_A Putative transcriptiona 29.7 2.3E+02 0.0078 25.1 9.2 82 270-354 8-98 (292)
212 1y88_A Hypothetical protein AF 29.7 98 0.0033 27.2 6.1 41 111-151 18-69 (199)
213 2zat_A Dehydrogenase/reductase 29.6 1.3E+02 0.0044 26.7 7.4 54 281-335 46-101 (260)
214 3t7c_A Carveol dehydrogenase; 29.5 2E+02 0.0068 26.2 8.8 54 282-336 73-128 (299)
215 3s40_A Diacylglycerol kinase; 29.4 1.3E+02 0.0045 27.8 7.5 71 283-358 25-99 (304)
216 3rss_A Putative uncharacterize 29.3 1.7E+02 0.0058 29.5 8.8 36 271-306 53-88 (502)
217 1sq1_A Chorismate synthase; st 29.3 1E+02 0.0036 29.6 6.6 64 312-392 187-253 (370)
218 3nsx_A Alpha-glucosidase; stru 29.3 4.6E+02 0.016 27.3 12.4 92 235-330 132-236 (666)
219 2xed_A Putative maleate isomer 29.2 1.3E+02 0.0044 27.6 7.3 64 271-336 147-220 (273)
220 1geg_A Acetoin reductase; SDR 28.9 1.6E+02 0.0053 26.1 7.8 84 238-335 4-89 (256)
221 2qq5_A DHRS1, dehydrogenase/re 28.8 1.2E+02 0.0042 26.9 7.1 53 281-334 37-92 (260)
222 1lyp_A CAP18; lipopolysacchari 28.7 88 0.003 18.0 4.0 17 405-421 2-18 (32)
223 3u7r_A NADPH-dependent FMN red 28.3 1.7E+02 0.0058 25.1 7.5 94 271-366 3-122 (190)
224 3ftp_A 3-oxoacyl-[acyl-carrier 28.3 96 0.0033 28.0 6.2 84 238-335 30-115 (270)
225 3oid_A Enoyl-[acyl-carrier-pro 28.1 1.8E+02 0.0062 25.8 8.1 55 280-335 36-92 (258)
226 1yb1_A 17-beta-hydroxysteroid 28.1 2E+02 0.0069 25.6 8.5 84 238-335 33-118 (272)
227 3svt_A Short-chain type dehydr 28.0 1.7E+02 0.0059 26.2 8.0 84 238-335 13-101 (281)
228 4imr_A 3-oxoacyl-(acyl-carrier 27.8 95 0.0032 28.1 6.1 83 239-335 36-119 (275)
229 3cxt_A Dehydrogenase with diff 27.8 1.4E+02 0.0047 27.3 7.3 84 238-335 36-121 (291)
230 3hcw_A Maltose operon transcri 27.7 3.3E+02 0.011 24.2 10.5 82 270-354 7-97 (295)
231 1vl8_A Gluconate 5-dehydrogena 27.4 1.6E+02 0.0054 26.4 7.6 84 238-335 23-109 (267)
232 4da9_A Short-chain dehydrogena 27.4 2.2E+02 0.0077 25.6 8.7 85 238-335 31-117 (280)
233 3awd_A GOX2181, putative polyo 27.0 1.8E+02 0.0063 25.4 7.9 84 238-335 15-100 (260)
234 3olq_A Universal stress protei 27.0 1E+02 0.0035 28.1 6.3 70 285-357 74-151 (319)
235 3ai3_A NADPH-sorbose reductase 26.5 1.7E+02 0.0058 25.9 7.6 84 238-335 9-95 (263)
236 4g84_A Histidine--tRNA ligase, 26.5 2.3E+02 0.0077 27.8 9.1 58 271-332 367-424 (464)
237 3fxa_A SIS domain protein; str 26.5 1.6E+02 0.0055 25.0 7.1 56 275-330 49-124 (201)
238 1iy8_A Levodione reductase; ox 26.5 1.7E+02 0.0057 26.1 7.6 85 238-336 15-103 (267)
239 2vob_A Trypanothione synthetas 26.4 32 0.0011 36.1 2.8 44 19-65 544-588 (652)
240 3oec_A Carveol dehydrogenase ( 26.2 2E+02 0.007 26.5 8.3 54 282-336 91-146 (317)
241 2pju_A Propionate catabolism o 26.1 1.7E+02 0.0058 26.0 7.3 55 271-332 107-161 (225)
242 3a9s_A D-arabinose isomerase; 26.1 3.5E+02 0.012 27.8 10.4 112 270-383 11-144 (595)
243 2uvd_A 3-oxoacyl-(acyl-carrier 26.0 1.6E+02 0.0055 25.8 7.2 53 282-335 38-92 (246)
244 4egf_A L-xylulose reductase; s 26.0 1.4E+02 0.0047 26.8 6.9 84 239-336 23-109 (266)
245 2b4q_A Rhamnolipids biosynthes 26.0 1.8E+02 0.0062 26.1 7.8 83 238-335 31-115 (276)
246 3pgx_A Carveol dehydrogenase; 26.0 1.9E+02 0.0066 25.9 8.0 54 282-336 61-116 (280)
247 2x7x_A Sensor protein; transfe 25.9 3.4E+02 0.012 24.6 9.8 60 270-333 6-70 (325)
248 1zl0_A Hypothetical protein PA 25.8 1.7E+02 0.0059 27.4 7.6 100 270-377 17-131 (311)
249 1qxo_A Chorismate synthase; be 25.8 1.3E+02 0.0045 29.1 6.7 62 313-391 199-265 (388)
250 3hgm_A Universal stress protei 25.7 1.5E+02 0.0052 23.1 6.5 54 285-342 71-127 (147)
251 1xq1_A Putative tropinone redu 25.6 1.6E+02 0.0054 26.1 7.2 84 238-335 16-102 (266)
252 2fvy_A D-galactose-binding per 25.3 2.6E+02 0.0089 24.9 8.8 83 271-354 3-90 (309)
253 3h8q_A Thioredoxin reductase 3 25.2 2.3E+02 0.0078 21.6 8.9 38 281-318 25-62 (114)
254 3a28_C L-2.3-butanediol dehydr 25.0 1.8E+02 0.0062 25.7 7.4 87 238-336 4-92 (258)
255 1nvm_A HOA, 4-hydroxy-2-oxoval 24.8 1.6E+02 0.0053 28.0 7.2 50 279-328 115-165 (345)
256 3hs3_A Ribose operon repressor 24.7 3.6E+02 0.012 23.7 15.1 106 270-399 10-119 (277)
257 3c3k_A Alanine racemase; struc 24.6 1.9E+02 0.0066 25.7 7.6 81 270-354 8-92 (285)
258 1um0_A Chorismate synthase; be 24.6 1.3E+02 0.0044 28.9 6.3 36 354-391 217-255 (365)
259 4ecd_A Chorismate synthase; 4- 24.4 1.2E+02 0.0039 29.7 6.0 42 348-391 227-273 (398)
260 3ioy_A Short-chain dehydrogena 24.3 1.6E+02 0.0056 27.2 7.2 84 238-335 10-97 (319)
261 3tsc_A Putative oxidoreductase 24.2 2.2E+02 0.0075 25.4 8.0 53 282-335 57-111 (277)
262 3cx3_A Lipoprotein; zinc-bindi 24.2 1.7E+02 0.0059 26.7 7.2 64 292-355 190-256 (284)
263 3i1j_A Oxidoreductase, short c 24.2 1.2E+02 0.004 26.6 5.9 55 281-335 46-104 (247)
264 1wu7_A Histidyl-tRNA synthetas 23.9 3.1E+02 0.011 26.6 9.5 57 271-332 333-389 (434)
265 1xkq_A Short-chain reductase f 23.6 1.8E+02 0.0061 26.1 7.2 55 281-336 38-97 (280)
266 1q77_A Hypothetical protein AQ 23.2 71 0.0024 25.0 3.8 55 295-355 84-138 (138)
267 3is3_A 17BETA-hydroxysteroid d 23.1 2.5E+02 0.0084 25.0 8.0 54 281-335 51-106 (270)
268 3uve_A Carveol dehydrogenase ( 23.1 2.3E+02 0.008 25.3 8.0 29 271-301 11-39 (286)
269 2bd0_A Sepiapterin reductase; 23.1 2.5E+02 0.0085 24.3 7.9 54 281-335 41-96 (244)
270 3rih_A Short chain dehydrogena 23.1 1.5E+02 0.0051 27.1 6.6 84 238-335 43-129 (293)
271 3s81_A Putative aspartate race 23.0 1E+02 0.0034 28.3 5.2 41 314-354 88-128 (268)
272 2p6n_A ATP-dependent RNA helic 22.8 3.4E+02 0.012 22.8 8.8 55 271-332 55-111 (191)
273 2g3m_A Maltase, alpha-glucosid 22.8 6.7E+02 0.023 26.2 13.1 94 234-331 143-249 (693)
274 2o11_A Chorismate synthase; sh 22.7 1.4E+02 0.0049 29.1 6.3 41 349-391 225-270 (407)
275 3l4y_A Maltase-glucoamylase, i 22.7 4.2E+02 0.015 28.6 10.8 95 233-331 257-364 (875)
276 4e3z_A Putative oxidoreductase 22.5 2.7E+02 0.0092 24.7 8.2 86 238-336 28-115 (272)
277 3s99_A Basic membrane lipoprot 22.4 2E+02 0.007 27.3 7.6 84 271-354 27-116 (356)
278 3huu_A Transcription regulator 22.4 3.2E+02 0.011 24.4 8.8 82 270-354 22-112 (305)
279 2q5c_A NTRC family transcripti 22.3 1.7E+02 0.0057 25.3 6.3 55 271-332 95-149 (196)
280 4eys_A MCCC family protein; MC 22.3 1.2E+02 0.0042 28.8 5.9 72 271-343 6-93 (346)
281 2ftp_A Hydroxymethylglutaryl-C 22.0 2.2E+02 0.0077 26.2 7.6 47 284-330 124-177 (302)
282 1fmc_A 7 alpha-hydroxysteroid 22.0 1.9E+02 0.0066 25.1 7.0 85 238-336 13-99 (255)
283 3op4_A 3-oxoacyl-[acyl-carrier 22.0 2.1E+02 0.0073 25.1 7.2 27 309-335 65-93 (248)
284 3v2g_A 3-oxoacyl-[acyl-carrier 22.0 3.2E+02 0.011 24.3 8.6 85 238-335 33-119 (271)
285 3o26_A Salutaridine reductase; 22.0 1.3E+02 0.0043 27.3 5.8 54 281-335 44-101 (311)
286 1vim_A Hypothetical protein AF 22.0 1.9E+02 0.0065 24.6 6.7 79 275-358 51-144 (200)
287 3lt0_A Enoyl-ACP reductase; tr 21.9 1E+02 0.0036 28.7 5.3 33 271-303 2-34 (329)
288 3ksu_A 3-oxoacyl-acyl carrier 21.9 2.1E+02 0.007 25.5 7.2 61 270-333 10-70 (262)
289 3ixl_A Amdase, arylmalonate de 21.8 4.2E+02 0.014 23.4 9.7 61 271-334 118-190 (240)
290 3k6v_A Solute-binding protein 21.8 5.1E+02 0.018 24.5 10.5 29 276-304 47-77 (354)
291 1xhl_A Short-chain dehydrogena 21.7 2E+02 0.0069 26.2 7.2 84 238-335 28-116 (297)
292 1e7w_A Pteridine reductase; di 21.7 2.1E+02 0.0071 25.9 7.3 59 270-333 8-67 (291)
293 3sx2_A Putative 3-ketoacyl-(ac 21.6 2.3E+02 0.008 25.2 7.6 54 282-336 58-113 (278)
294 4dmm_A 3-oxoacyl-[acyl-carrier 21.6 2.1E+02 0.0072 25.6 7.2 85 239-336 31-117 (269)
295 3osu_A 3-oxoacyl-[acyl-carrier 21.6 2.8E+02 0.0097 24.1 8.0 54 281-335 37-92 (246)
296 2jvf_A De novo protein M7; tet 21.6 2.3E+02 0.0078 20.3 6.4 55 241-304 26-85 (96)
297 1nyt_A Shikimate 5-dehydrogena 21.4 3E+02 0.01 24.8 8.2 44 271-321 119-162 (271)
298 3lpp_A Sucrase-isomaltase; gly 21.4 5.1E+02 0.017 28.1 11.1 95 233-331 285-392 (898)
299 4iiu_A 3-oxoacyl-[acyl-carrier 21.2 2.7E+02 0.0094 24.6 7.9 86 238-336 28-115 (267)
300 2io8_A Bifunctional glutathion 21.2 16 0.00056 38.1 -0.7 44 19-65 529-573 (619)
301 1wma_A Carbonyl reductase [NAD 21.2 1.9E+02 0.0064 25.4 6.8 53 282-335 38-92 (276)
302 3edm_A Short chain dehydrogena 21.2 2.8E+02 0.0097 24.4 8.0 54 281-335 41-96 (259)
303 2z1n_A Dehydrogenase; reductas 21.2 2.5E+02 0.0084 24.8 7.6 84 238-335 9-95 (260)
304 2yzt_A Putative uncharacterize 21.1 75 0.0026 22.3 3.1 20 240-259 27-46 (67)
305 4ba0_A Alpha-glucosidase, puta 21.1 3.9E+02 0.013 28.6 10.1 94 234-331 230-341 (817)
306 3u9l_A 3-oxoacyl-[acyl-carrier 21.1 2.4E+02 0.0081 26.2 7.7 55 280-335 41-97 (324)
307 1tjy_A Sugar transport protein 21.0 2.5E+02 0.0085 25.5 7.8 81 271-354 4-91 (316)
308 4hp8_A 2-deoxy-D-gluconate 3-d 21.0 4.1E+02 0.014 23.7 9.0 56 270-333 8-63 (247)
309 3lf2_A Short chain oxidoreduct 21.0 2.9E+02 0.0098 24.5 8.0 54 281-335 40-97 (265)
310 3pzy_A MOG; ssgcid, seattle st 21.0 2.6E+02 0.009 23.3 7.1 68 270-341 7-82 (164)
311 3uug_A Multiple sugar-binding 21.0 2.6E+02 0.009 25.2 7.9 83 270-354 3-90 (330)
312 3icc_A Putative 3-oxoacyl-(acy 20.9 2.9E+02 0.01 24.0 8.0 53 282-335 41-101 (255)
313 1x1t_A D(-)-3-hydroxybutyrate 20.9 2.1E+02 0.0073 25.2 7.1 49 286-335 42-93 (260)
314 1byk_A Protein (trehalose oper 20.9 4E+02 0.014 22.8 10.8 80 271-354 3-85 (255)
315 1v9c_A Precorrin-8X methyl mut 20.8 2.7E+02 0.0091 24.7 7.3 54 338-397 142-197 (218)
316 3u5t_A 3-oxoacyl-[acyl-carrier 20.8 3.2E+02 0.011 24.3 8.4 85 239-336 30-116 (267)
317 2z08_A Universal stress protei 20.8 1.3E+02 0.0043 23.5 4.9 42 296-341 73-115 (137)
318 3e3m_A Transcriptional regulat 20.7 3.3E+02 0.011 25.1 8.7 60 271-332 71-133 (355)
319 3s55_A Putative short-chain de 20.6 2.9E+02 0.0098 24.6 8.0 53 283-336 56-110 (281)
320 1gee_A Glucose 1-dehydrogenase 20.6 2.4E+02 0.0082 24.7 7.3 85 238-335 9-95 (261)
321 2h3h_A Sugar ABC transporter, 20.5 3.5E+02 0.012 24.2 8.7 67 287-354 20-88 (313)
322 3gi1_A LBP, laminin-binding pr 20.3 1.9E+02 0.0064 26.6 6.6 63 292-354 192-257 (286)
323 1w6u_A 2,4-dienoyl-COA reducta 20.3 2.5E+02 0.0086 25.2 7.6 84 238-335 28-114 (302)
324 2vk2_A YTFQ, ABC transporter p 20.3 3.1E+02 0.01 24.6 8.2 81 272-354 4-89 (306)
325 2nx9_A Oxaloacetate decarboxyl 20.2 2.9E+02 0.01 27.4 8.3 56 276-331 119-177 (464)
326 1evl_A Threonyl-tRNA synthetas 20.1 5.7E+02 0.02 24.3 10.8 57 271-332 299-355 (401)
No 1
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=100.00 E-value=1.9e-50 Score=352.86 Aligned_cols=168 Identities=65% Similarity=1.032 Sum_probs=163.3
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.+.|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++|||||++++|++
T Consensus 13 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 92 (183)
T 1o4v_A 13 VPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHL 92 (183)
T ss_dssp -CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (438)
||||||++++.++|+|+||||+|||+|+||+||+|||++|||++|+|||+++|+++|+||++||.+++.++.+++++|++
T Consensus 93 PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~l~~ 172 (183)
T 1o4v_A 93 PVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQ 172 (183)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999989998
Q ss_pred hhhhhhhc
Q 013661 430 DGWESYLN 437 (438)
Q Consensus 430 ~~~~~~~~ 437 (438)
.||+.|++
T Consensus 173 ~~~~~~~~ 180 (183)
T 1o4v_A 173 IGYKEYLN 180 (183)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHh
Confidence 89999974
No 2
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=100.00 E-value=4.7e-50 Score=348.29 Aligned_cols=165 Identities=65% Similarity=0.977 Sum_probs=160.4
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
..++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|+++++++|++|+|++||+++|||||++++|+
T Consensus 6 ~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 85 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATP 85 (174)
T ss_dssp CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred CCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (438)
+||||||++.+.++|+|+|||++|||+|+||+||+|||++|||++|+|||+++|+.+|+||++||.++.+++++++++|+
T Consensus 86 ~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~ 165 (174)
T 3lp6_A 86 LPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQ 165 (174)
T ss_dssp SCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 013661 429 KDGWE 433 (438)
Q Consensus 429 ~~~~~ 433 (438)
+.||+
T Consensus 166 ~~~~~ 170 (174)
T 3lp6_A 166 RLAGK 170 (174)
T ss_dssp HHTC-
T ss_pred Hhhhh
Confidence 99996
No 3
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=100.00 E-value=7.9e-49 Score=339.04 Aligned_cols=161 Identities=43% Similarity=0.642 Sum_probs=155.8
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
..++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|+
T Consensus 5 ~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 84 (169)
T 3trh_A 5 NKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTL 84 (169)
T ss_dssp -CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCS
T ss_pred CCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 426 (438)
+||||||++++.++|+|+|||++|||+|+||+||+|| |++|||++|+|||+++|+.||+||++||.++.+++++++++
T Consensus 85 ~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~ 164 (169)
T 3trh_A 85 KPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKSIAQKLVQQRTAKRETLKKADEN 164 (169)
T ss_dssp SCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999988889999999999999999999999999 99999999999999999999999999999999999999988
Q ss_pred HhH
Q 013661 427 LQK 429 (438)
Q Consensus 427 ~~~ 429 (438)
|++
T Consensus 165 l~~ 167 (169)
T 3trh_A 165 LQT 167 (169)
T ss_dssp HHH
T ss_pred Hhh
Confidence 864
No 4
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.8e-49 Score=339.01 Aligned_cols=158 Identities=53% Similarity=0.865 Sum_probs=153.3
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++|||||++++|++
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 82 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTL 82 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 427 (438)
||||||++++.++|+|+||||+|||+||||+||+|| |++|||++|+|||+++|+++|+||++||.++.+++++++++|
T Consensus 83 PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l 162 (163)
T 3ors_A 83 PVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNEL 162 (163)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 999999988889999999999999999999999999 999999999999999999999999999999999998877665
No 5
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=100.00 E-value=2.2e-48 Score=336.04 Aligned_cols=157 Identities=59% Similarity=0.883 Sum_probs=149.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
++.|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++|||||++++|++
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 90 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 90 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 426 (438)
||||||++++.++|+|+||||+|||+|+||+||+|| |++|||++|+|||+++|+++|+||++||.++++++++++++
T Consensus 91 PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~r~~~~~~v~~~~~~ 169 (170)
T 1xmp_A 91 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSEL 169 (170)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999988889999999999999999999999999 99999999999999999999999999999999998776654
No 6
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=100.00 E-value=1e-47 Score=333.94 Aligned_cols=156 Identities=60% Similarity=0.893 Sum_probs=149.3
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
++.|+|||||+||+++++++++.|++||++|+++|+||||+|+++.+|.++++++|++|+|++||+++|||||++++|++
T Consensus 22 kp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T~~ 101 (181)
T 4b4k_A 22 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 101 (181)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTCCS
T ss_pred CccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcCCC
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAE 425 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (438)
||||||+.+..++|+|+|||++|||+||||+||+|| ++.|||++|+|||+++|+++|+||++||.++.+++.++++
T Consensus 102 PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qILa~~d~~l~~kl~~~r~~~~~~v~~~~e 179 (181)
T 4b4k_A 102 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSE 179 (181)
T ss_dssp CEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998889999999999999999999999999 6799999999999999999999999999999998876554
No 7
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=100.00 E-value=5.8e-48 Score=334.56 Aligned_cols=157 Identities=53% Similarity=0.863 Sum_probs=150.9
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
.+++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++||||+++++|+
T Consensus 11 m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 90 (174)
T 3kuu_A 11 AGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTL 90 (174)
T ss_dssp CCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAE 425 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (438)
+||||||++++.++|+|+|||++|||+||||+||+|| |++|||++|+|||+++|++||+||++||.++.++++++..
T Consensus 91 ~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~r~~~~~~v~~~~~ 169 (174)
T 3kuu_A 91 VPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPD 169 (174)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999988889999999999999999999999999 9999999999999999999999999999999998875543
No 8
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=100.00 E-value=6.9e-48 Score=336.42 Aligned_cols=159 Identities=54% Similarity=0.806 Sum_probs=151.3
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.++|+|||||+||++++++++..|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++|||||++++|.+
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 100 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRL 100 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 427 (438)
||||||++++.++|+|+||||+|||+|+||+||+|| |++|||++|+|||+++|+++|+||++||.+++.++++++++|
T Consensus 101 PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~l 180 (182)
T 1u11_A 101 PVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPITE 180 (182)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHSCSSCC--
T ss_pred CEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999988889999999999999999999999999 999999999999999999999999999999999887666555
Q ss_pred h
Q 013661 428 Q 428 (438)
Q Consensus 428 ~ 428 (438)
+
T Consensus 181 ~ 181 (182)
T 1u11_A 181 D 181 (182)
T ss_dssp -
T ss_pred c
Confidence 3
No 9
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=100.00 E-value=1.3e-47 Score=330.47 Aligned_cols=156 Identities=53% Similarity=0.834 Sum_probs=149.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|+++++++|++|+|++||+++|||||++++|++
T Consensus 5 ~p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 84 (166)
T 3oow_A 5 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTL 84 (166)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSS
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCC--cchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--ATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAE 425 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~--~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (438)
||||||++.+.++|+|+|||++|||+||||+||+||| ++|||++|+|||+++|+++|+||++||.++.++++++++
T Consensus 85 PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~ 162 (166)
T 3oow_A 85 PVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPD 162 (166)
T ss_dssp CEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999888899999999999999999999999995 999999999999999999999999999999998875543
No 10
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-46 Score=322.36 Aligned_cols=153 Identities=48% Similarity=0.755 Sum_probs=147.0
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceE
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVI 352 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi 352 (438)
|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|.+++++ +|+|++||+++|||||++++|.+|||
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa~Lpgvva~~t~~PVI 78 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLAAHLPGVVASLTTKPVI 78 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC---SEEEEEEESSCCHHHHHHTTCSSCEE
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC---CEEEEEcCchhhhHHHHHhccCCCEE
Confidence 789999999999999999999999999999999999999999999987654 99999999999999999999999999
Q ss_pred eccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 013661 353 GVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429 (438)
Q Consensus 353 ~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (438)
|||+ +..++|+|+||||+|||+|+||+||+|||++|||++|+|||+++|+++|+||++||.+++.++++++++|++
T Consensus 79 gVP~-~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~~ 154 (157)
T 2ywx_A 79 AVPV-DAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREKMKKKVYASDEKVKE 154 (157)
T ss_dssp EEEE-CSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecC-CCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999 778999999999999999999999999999999999999999999999999999999999999988877764
No 11
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=100.00 E-value=9.2e-47 Score=326.19 Aligned_cols=153 Identities=54% Similarity=0.836 Sum_probs=148.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCC
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
..++|+|||||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++||+++|||||++++|+
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t~ 90 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKTT 90 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHCC
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheecCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 013661 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVL 421 (438)
Q Consensus 349 ~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~--~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~ 421 (438)
+||||||++++.++|+|+|||++|||+|+||+|+.|| |++|||++|+|||+++|+++|+||++||.++.++++
T Consensus 91 ~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r~~~~~~v~ 165 (173)
T 4grd_A 91 VPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFRVRQNEAAH 165 (173)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998899999999999999999999999998 899999999999999999999999999999988765
No 12
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=100.00 E-value=1.9e-46 Score=322.57 Aligned_cols=155 Identities=29% Similarity=0.435 Sum_probs=148.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhc-CCeEEEEeccccCcccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~-g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++ |++|+|++||+++||||+++++|++
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCC
Confidence 679999999999999999999999999999999999999999999999998875 7999999999999999999999999
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (438)
||||||++++.++|+| |||++|||+|+||+|| ||++|||++|+|||+++|+++|+||++||.+++.++++++++|+
T Consensus 83 PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv--~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~ 158 (159)
T 3rg8_A 83 ATIACPPPSDSFAGAD-IYSSLRMPSGISPALV--LEPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLK 158 (159)
T ss_dssp CEEECCCCCCGGGGTH-HHHHHCCCTTCCCEEC--CSHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEe--cCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999888899999 9999999999999997 79999999999999999999999999999999999998888764
No 13
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=5.2e-40 Score=333.78 Aligned_cols=250 Identities=43% Similarity=0.732 Sum_probs=224.1
Q ss_pred CHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEE
Q 013661 5 DLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCY 84 (438)
Q Consensus 5 s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~ 84 (438)
+.+++.++++++|||+||||..++++|+|+++++|++|+.++++.+.+. .++||+||++++|+++.++++.+| +..+
T Consensus 148 ~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~--~~lvEe~i~~~~E~sv~v~~~~~g-~~~~ 224 (403)
T 3k5i_A 148 TPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDR--PLYAEKWAYFKMELAVIVVKTKDE-VLSY 224 (403)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTS--CEEEEECCCEEEEEEEEEEECSSC-EEEC
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCC--cEEEecCCCCCeEEEEEEEEcCCC-EEEe
Confidence 8999999999999999999988767899999999999999999887544 499999999779999999999888 8889
Q ss_pred eeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeecc
Q 013661 85 PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCY 163 (438)
Q Consensus 85 ~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~~ 163 (438)
+..++.+.+|....++.|++ ++++..+++++++.+++++||++|++++||+++++|++||+|+|||+++||+++..+++
T Consensus 225 p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~~~ 304 (403)
T 3k5i_A 225 PTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCA 304 (403)
T ss_dssp CCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHHHBS
T ss_pred CCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeeeecC
Confidence 98888888898888889999 99999999999999999999999999999999988899999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCCCCCCCC-CceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEEEE
Q 013661 164 TSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV 242 (438)
Q Consensus 164 ~~~~~~~~~~~~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~~ 242 (438)
+|+|++++|+++|+|++...... ..++|.++++...+...+. ++.+++..|+|++++|++++.++++++|||++.
T Consensus 305 ~s~~~~~~ra~~G~pl~~~~~~~~~~a~m~nilg~~~~~~~~~----~~~~~~~~p~~~~~~ygk~~~~~~rkmGhv~~~ 380 (403)
T 3k5i_A 305 LSQFDAHLRAILDLPIPAQSLEIRQPSIMLNIIGGAAPDTHLQ----AAECALSIPNASIHLYSKGAAKPGRKMGHITVT 380 (403)
T ss_dssp SCHHHHHHHHHTTCCCCGGGGSBSSCEEEEEEECCSSSSHHHH----HHHHHTTSTTEEEEECCCCSCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCCCcccccCCCcEEEEEEecCCccccchh----HHHHHhcCCCCEEEECCCCCCCCCCeeEEEEEE
Confidence 99999999999999998865433 3478999998643321233 566778899999999999899999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCC
Q 013661 243 GSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 243 G~~~~eA~~ka~~a~~~i~ 261 (438)
|+|.++|++++.++.+.++
T Consensus 381 ~~~~~~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 381 APTMHEAETHIQPLIDVVD 399 (403)
T ss_dssp CSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhhh
Confidence 9999999999999988765
No 14
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=9.5e-40 Score=325.46 Aligned_cols=240 Identities=31% Similarity=0.474 Sum_probs=215.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCC--HHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKS--EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~--~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+++.++++++|||+||||+.+|++|+|+++++| ++|+.+++ .+ .++||+||++++|+++.++++.+|
T Consensus 99 ~v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~~---~vivEe~I~~~~Eisv~v~~~~~G 172 (355)
T 3eth_A 99 LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---YG---ECIVEQGINFSGEVSLVGARGFDG 172 (355)
T ss_dssp EECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---TT---TEEEEECCCCSEEEEEEEEECTTS
T ss_pred EECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---hC---CEEEEEccCCCcEEEEEEEEcCCC
Confidence 35788899999999999999999887678999999999 99998754 22 499999999779999999999999
Q ss_pred eEEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCcee
Q 013661 80 SILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTI 159 (438)
Q Consensus 80 ~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~ 159 (438)
++.++++.++++++|.+..+++|+.+++++.+++++++.+++++||++|++++||++++ +++||+|+|||+++++|++.
T Consensus 173 ~~~~~p~~e~~~~~g~~~~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~~t~ 251 (355)
T 3eth_A 173 STVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTP-QGLLINELAPRVHNSGHWTQ 251 (355)
T ss_dssp CEEECCCEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHH
T ss_pred CEEEECCEEEEeeCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEeeCCCCCCccEEe
Confidence 99999999988888988777888899999999999999999999999999999999985 57999999999999999999
Q ss_pred eeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEE
Q 013661 160 ESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHI 239 (438)
Q Consensus 160 ~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~V 239 (438)
.++++|+|++|+|+++|+|++++... .+++|.++++.. ...+++..|++++|+|++ +.++++++|||
T Consensus 252 ~~~~~s~fe~~~ra~~G~pl~~~~~~-~~~~m~nilg~~-----------~~~~~~~~p~~~~~~ygk-~~r~~rkmGhv 318 (355)
T 3eth_A 252 NGASISQFELHLRAITDLPLPQPVVN-NPSVMINLIGSD-----------VNYDWLKLPLVHLHWYDK-EVRPGRKVGHL 318 (355)
T ss_dssp HHSSSCHHHHHHHHHTTCCCCCCCCC-SCEEEEEEESCC-----------CCGGGGGSTTCEEEECCC-CCCTTCEEEEE
T ss_pred eeecCCHHHHHHHHHcCCCCCCcccc-CceEEEEEecch-----------HHHHHHhCCCCEEEEcCC-CCCCCCeeEEE
Confidence 99999999999999999999887653 348899999853 223567789999999999 88999999999
Q ss_pred EEEcCCHHHHHHHHHHHhhcCC
Q 013661 240 TIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 240 i~~G~~~~eA~~ka~~a~~~i~ 261 (438)
++.|+|.++++++++++.+.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 319 NLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EEECSCHHHHHHHHHHHGGGSC
T ss_pred EEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 15
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=8.3e-39 Score=326.25 Aligned_cols=252 Identities=31% Similarity=0.488 Sum_probs=224.2
Q ss_pred ccCCHHHHHHHHHh----hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 2 EVNDLESARRAGKQ----FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~----igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
.+++.+++.+++++ + ||+||||..+|++|+|+++++|++|+.++++.+...+ ++|||||++++|+++.+++|.
T Consensus 153 ~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~--~lvEe~i~~~~Eisv~v~~~~ 229 (419)
T 4e4t_A 153 VIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVP--CVLEKRLPLKYEVSALIARGA 229 (419)
T ss_dssp EECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCC--EEEEECCCEEEEEEEEEEECT
T ss_pred EECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCc--EEEeecCCCCeEEEEEEEEcC
Confidence 36788999998888 9 9999999855668999999999999999998875444 999999997799999999999
Q ss_pred CCeEEEEeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013661 78 DKSILCYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~ 156 (438)
+|++..++..++.+.+|.+..++.|++ +++++.+++++++.+++++||++|++++||+++++|++||+|||||++++++
T Consensus 230 ~G~~~~~~~~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~ 309 (419)
T 4e4t_A 230 DGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGH 309 (419)
T ss_dssp TSCEEECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESSCCGGGT
T ss_pred CCCEEEEeCeEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCC
Confidence 999999998888888888887888998 9999999999999999999999999999999998889999999999999999
Q ss_pred ceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCcc------CCCcchhhhchhhhhccCCcEEEEeccccc
Q 013661 157 HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEG------ERGFYLAHQLIGKALSIPGATVHWYDKPEM 230 (438)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~ 230 (438)
++..++++|+|++++|+++|+|++.+... .+++|.++++.... ...+. ++.+++..|++++++|++++.
T Consensus 310 ~t~~~~~~s~~~~~~ra~~G~pl~~~~~~-~~~~m~n~lg~~~~~~~~~~~~~~~----~~~~~l~~p~~~~~~ygk~~~ 384 (419)
T 4e4t_A 310 YTVDACATSQFEQQVRAMTRMPLGNPRQH-SPAAMLNILGDVWFPNGAAAGAVTP----PWDTVAAMPAAHLHLYGKEEA 384 (419)
T ss_dssp THHHHBSSCHHHHHHHHHTTCCCCCCCBC-SCEEEEEEEGGGGCTTCGGGCCCCC----CHHHHHTSTTEEEEECCCSCC
T ss_pred eEeeccCCCHHHHHHHHHcCCCCCCcccc-CCeEEEEEecCccccccccccccch----HHHHHHhCCCCEEEECCCCCC
Confidence 99999999999999999999999887653 44889999986321 01133 666788899999999999888
Q ss_pred cCCceeEEEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 231 RQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 231 ~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
++++++|||++.|+|.++|+++++++.+.+.
T Consensus 385 ~~~rkmGhv~~~~~~~~~~~~~a~~~~~~l~ 415 (419)
T 4e4t_A 385 RVGRKMGHVNFTAEMRDDAVAAATACAQLLR 415 (419)
T ss_dssp CTTCEEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEEeCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988765
No 16
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=1.5e-38 Score=321.64 Aligned_cols=246 Identities=37% Similarity=0.598 Sum_probs=218.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.+++.+++.++++++|||+||||+.++++|+|+++++|++|+.++++.+...+ ++||+||+|++|+++.+++|.+|++
T Consensus 132 ~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~--~lvEe~i~g~~E~~v~~~~~~~G~~ 209 (389)
T 3q2o_A 132 LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKWVPFEKEVSVIVIRSVSGET 209 (389)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSC--EEEEECCCCSEEEEEEEEECTTCCE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCC--EEEEecccCceEEEEEEEEcCCCCE
Confidence 36789999999999999999999887645899999999999999998775445 9999999987999999999989999
Q ss_pred EEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeee
Q 013661 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~ 161 (438)
..++..++.+..|....++.|+.++++..+++++++.+++++||++|++++||+++++|++||+|+|||++++++++..+
T Consensus 210 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~~~ 289 (389)
T 3q2o_A 210 KVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDA 289 (389)
T ss_dssp EECCCEEEEEETTEEEEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHH
T ss_pred EEecCeeeEEcCCceEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHHHH
Confidence 99999888888888888888999999999999999999999999999999999999888999999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhh-hccCCcEEEEeccccccCCceeEEEE
Q 013661 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKA-LSIPGATVHWYDKPEMRQQRKMGHIT 240 (438)
Q Consensus 162 ~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~G~Vi 240 (438)
+++++|++++++++|.|+++.... .+++|.++++.. +. ..... .++|+|++++|++.+.++++++|||+
T Consensus 290 ~g~~~~~~~~r~~lg~~l~~~~~~-~~~~~~~~~g~~-----~~----~~~~~~~~~p~~~~~lygk~~~~~~r~~G~v~ 359 (389)
T 3q2o_A 290 CETSQFGQHIRAICNLPLGETNLL-KPVVMVNILGEH-----IE----GVLRQVNRLTGCYLHLYGKEEAKAQRKMGHVN 359 (389)
T ss_dssp BSSCHHHHHHHHHHTCCCCCCCBC-SCEEEEEEEHHH-----HH----HHHHTGGGCTTEEEEECCCSSCCTTSEEEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCCcccc-CcEEEEEEecCc-----hh----hHHHHHHhCCCCEEEECCCCCCCCCCeeEEEE
Confidence 999999999999999999987643 347788887642 11 22233 47899999999987888999999999
Q ss_pred EEcCCHHHHHHHHHHHhhc
Q 013661 241 IVGSSMGLVESRLNSLLKE 259 (438)
Q Consensus 241 ~~G~~~~eA~~ka~~a~~~ 259 (438)
++|+|+++|++|++.+.-|
T Consensus 360 ~~~~~~~~a~~~a~~~~~w 378 (389)
T 3q2o_A 360 ILNDNIEVALEKAKSLHIW 378 (389)
T ss_dssp EECSSHHHHHHHHHHTTSC
T ss_pred EEcCCHHHHHHHHHHhCcc
Confidence 9999999999999887665
No 17
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=3e-38 Score=318.15 Aligned_cols=239 Identities=33% Similarity=0.572 Sum_probs=213.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~ 82 (438)
+++.+++.++++++|||+||||..++|+|+|+++++|++|+.++++.+...+ +++|+||+|.+|+++.++++.+|++.
T Consensus 131 ~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~--~ivEe~i~g~~E~sv~~~~~~~g~~~ 208 (377)
T 3orq_A 131 VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVSLTVTRGNNNQIT 208 (377)
T ss_dssp ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSC--EEEEECCCEEEEEEEEEEECGGGCEE
T ss_pred ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCc--EEEEccCCCCEEEEEEEEEeCCCCEE
Confidence 5678899999999999999999887668999999999999999998876655 99999999779999999988889999
Q ss_pred EEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeec
Q 013661 83 CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESC 162 (438)
Q Consensus 83 ~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~ 162 (438)
.++..++.+..|.+..++.|+.+++ .+++++++.+++++||++|++++||+++++|++||+|+|||+++++|++..++
T Consensus 209 ~~~~~e~~~~~g~~~~~~~Pa~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~~ 286 (377)
T 3orq_A 209 FFPLQENEHRNQILFKTIVPARIDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEAC 286 (377)
T ss_dssp ECCCEEEEEETTEEEEEEESCSSCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHB
T ss_pred EECCEeEEEECCEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehhc
Confidence 9999888888888888888998887 88999999999999999999999999998889999999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCCC-CCCCCCceEEEEeecCCccCCCcchhhhchhhhhc-cCCcEEEEeccccccCCceeEEEE
Q 013661 163 YTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALS-IPGATVHWYDKPEMRQQRKMGHIT 240 (438)
Q Consensus 163 ~~~~~~~~~~~~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~G~Vi 240 (438)
++++|++|+|+++|+|++. +... .+++|.++++.. +. ++.+.+. .|+|++|||++++.++++++|||+
T Consensus 287 ~~s~f~~~~ra~~G~pl~~~~~~~-~~~~m~n~lg~~-----~~----~~~~~~~~~~~~~~~~ygk~~~~~~rkmGhv~ 356 (377)
T 3orq_A 287 DYSQFDTHILAVTGQSLPNSIELL-KPAVMMNLLGKD-----LD----LLENEFNEHPEWHLHIYGKSERKDSRKMGHMT 356 (377)
T ss_dssp SSCHHHHHHHHHTTCCCCSCCCBS-SCEEEEEEEHHH-----HH----HHGGGGGGCGGGCEEECCCSSCCTTSEEEEEE
T ss_pred CCCHHHHHHHHHcCCCCCcccccc-ccEEEEEEeCcc-----ch----hHHHHHhhCCCCEEEECCCCCCCCCCeeEEEE
Confidence 9999999999999999998 6543 348899999853 22 5555565 699999999998999999999999
Q ss_pred EEcCCHHHHHHHHHH
Q 013661 241 IVGSSMGLVESRLNS 255 (438)
Q Consensus 241 ~~G~~~~eA~~ka~~ 255 (438)
+.|+|.+++++++..
T Consensus 357 ~~~~~~~~~~~~~~~ 371 (377)
T 3orq_A 357 VLTNDVNQTEQDMYA 371 (377)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred EEcCCHHHHHHHhHH
Confidence 999999999988764
No 18
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=322.61 Aligned_cols=176 Identities=23% Similarity=0.369 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~ 323 (438)
..++|..+++... .. +...+.|+|+|||+||++++++++..|+.||++|+++|+|+||+|+++.+|.+++++
T Consensus 247 ~~Y~eVa~rL~i~-~~-------~~~~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~ 318 (425)
T 2h31_A 247 KNFEWVAERVELL-LK-------SESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEG 318 (425)
T ss_dssp CCHHHHHTTGGGG-GS-------CSCCCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcc-cC-------ccCCCeEEEEecCcccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHH
Confidence 5666666555221 11 123578999999999999999999999999999999999999999999999999999
Q ss_pred cCC-eEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCCC
Q 013661 324 RGI-EIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGD 402 (438)
Q Consensus 324 ~g~-~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~~ 402 (438)
+|+ +|+|++|||++|||||++|+|.+||||||++ ..++|+||||||+|||+|+||+||+ +++|||++|+|||+++|
T Consensus 319 ~g~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~-~~~~G~daLls~vqmp~g~pvatv~--~~~nAa~~A~~Il~~~~ 395 (425)
T 2h31_A 319 DGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPL-TPDWGVQDVWSSLRLPSGLGCSTVL--SPEGSAQFAAQIFGLSN 395 (425)
T ss_dssp TCCCEEEEEECCSSCCHHHHHHHHCSSCEEECCCC-CTTTHHHHGGGTSSCCSSCCCEECC--CHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEEcCcccchHhHHhccCCCCEEEeeCc-cccccHHHHHHHhcCCCCCceEEec--CchHHHHHHHHHHccCC
Confidence 999 5999999999999999999999999999996 6799999999999999999999998 89999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 013661 403 ADLRARMQQYMEDMRDDVLTKAEKLQKD 430 (438)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 430 (438)
+.+|+||++||.+++.++.+++++|+..
T Consensus 396 ~~l~~kl~~~~~~~~~~v~~~~~~l~~~ 423 (425)
T 2h31_A 396 HLVWSKLRASILNTWISLKQADKKIREC 423 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 9999999999999999999999998753
No 19
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=5.3e-37 Score=345.10 Aligned_cols=362 Identities=17% Similarity=0.176 Sum_probs=271.6
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.++|.+|+.++++++|||+||||++++ ||+||.+|+|++||.++++.+.. ....++||+||+|.+|+++++++|++
T Consensus 694 ~~~s~eea~~~~~~ig~PvvVKP~~~~-gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~~- 771 (1073)
T 1a9x_A 694 TVTAIEMAVEKAKEIGYPLVVRASYVL-GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE- 771 (1073)
T ss_dssp ECCSHHHHHHHHHHHCSSEEEEC--------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECSS-
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEECC-
Confidence 367899999999999999999998876 89999999999999999988642 12459999999986699999999754
Q ss_pred eEEEEeeeeeEEec----CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
.++.+++.+++... |+.....+|..++++..+++++++.+++++||++|++++||+++ +|++||+|||||++++.
T Consensus 772 ~v~~~~i~e~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR~~~~~ 850 (1073)
T 1a9x_A 772 MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPRAARTV 850 (1073)
T ss_dssp CEEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECSCCTTH
T ss_pred eEEEEeeEEEEeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECCCccHH
Confidence 56777777776554 33333344447999999999999999999999999999999997 67899999999999876
Q ss_pred CceeeeccCcHHHHHHHHHhCCCCCCCCCC-----CCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccc
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMK-----TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEM 230 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~ 230 (438)
+++..++|+|+++.+++.++|.++++.... ...++..++ |+ ..++++++..+ +|+
T Consensus 851 ~~~~~~tGi~l~~~~~~~~~G~~l~~~~~~~~~~~~~~~vk~~~---------~~--------f~~~~~~d~~l--g~~- 910 (1073)
T 1a9x_A 851 PFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVV---------LP--------FNKFPGVDPLL--GPE- 910 (1073)
T ss_dssp HHHHHHHSCCHHHHHHHHHTTCCHHHHTCCSCCCCSSEEEEEEE---------CG--------GGGCTTSCCCC--CSS-
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCchhcccCcCcCCCeEEEEecc---------CC--------cccCCCCcCCC--CCc-
Confidence 777778999999999999999988543210 001111111 11 23456666654 355
Q ss_pred cCCceeEEEEEEcCCHHHHHHHHHHHhhc-CCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 013661 231 RQQRKMGHITIVGSSMGLVESRLNSLLKE-DSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR 309 (438)
Q Consensus 231 ~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~-i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr 309 (438)
++++|+|++.|.|+++|+.|++.+.+. ++ +.+.+ +++.++.||+.+.+.++.|.++||++.+| .+
T Consensus 911 --~~stGev~g~~~~~~~a~~ka~~~~~~~~p-------~~g~v-lisv~d~~K~~~~~~a~~l~~~G~~i~aT----~g 976 (1073)
T 1a9x_A 911 --MRSTGEVMGVGRTFAEAFAKAQLGSNSTMK-------KHGRA-LLSVREGDKERVVDLAAKLLKQGFELDAT----HG 976 (1073)
T ss_dssp --CCCCEEEEEEESSHHHHHHHHHHHTTCCCC-------SSSEE-EEECCGGGGTTHHHHHHHHHHTTCEEEEC----HH
T ss_pred --ccccCceEEecCCHHHHHHhhHHhccCCCC-------CcceE-EEEecCcCHHHHHHHHHHHHHCCCEEEEc----Cc
Confidence 577999999999999999999998874 32 34665 88888999999999999999999999888 45
Q ss_pred ChHHHHHhHhhhhhcCCeEEEEec--cccCcccccccCCCCCceEeccCC-CCCCCChhhHHHhhhCCCCCceEEEEeCC
Q 013661 310 TPDLMFSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVi~~p~~-~~~~~g~~~l~s~~~~~~g~p~~tv~~~~ 386 (438)
|.+|+ ++.|++|..+.. .+.+++.++|..+....|||+|.. ....||.. +|+.++..||||.|-. .
T Consensus 977 ----Ta~~l---~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~a~~~~~~~~t~~--~ 1045 (1073)
T 1a9x_A 977 ----TAIVL---GEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRV--IRRSALQYKVHYDTTL--N 1045 (1073)
T ss_dssp ----HHHHH---HTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCCSHHHHHHTHH--HHHHHHHTTCEEESSH--H
T ss_pred ----hHHHH---HhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECCCCcccccchHH--HHHHHHHhCCCEEccH--H
Confidence 78888 567999888765 456799999999999999999985 22345655 8999999999999522 2
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHHHHH
Q 013661 387 ATNAGLLAVRMLGFGDADLRARMQQYME 414 (438)
Q Consensus 387 ~~~Aa~~a~~il~~~~~~~~~~l~~~~~ 414 (438)
+..|++.|++- ..+..+ .+|++|+.
T Consensus 1046 ~~~~~~~~~~~--~~~~~~-~~~~~~~~ 1070 (1073)
T 1a9x_A 1046 GGFATAMALNA--DATEKV-ISVQEMHA 1070 (1073)
T ss_dssp HHHHHHHHHTC--CTTTCC-CCHHHHHH
T ss_pred HHHHHHHHHHh--hccCCe-eEHHHHHh
Confidence 44444444432 212333 45677753
No 20
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-33 Score=283.88 Aligned_cols=245 Identities=40% Similarity=0.674 Sum_probs=207.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~ 81 (438)
.+++.+++.++++++|||+|+||..++++|+|+++++|.+|+.++++.+.. ..++|||||++++|+++.+++|.+|++
T Consensus 116 ~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~--~~~lvEe~i~~g~e~sv~~~~d~~G~~ 193 (369)
T 3aw8_A 116 PVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGG--RGLILEGFVPFDREVSLLAVRGRTGEV 193 (369)
T ss_dssp EESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTCS--SSEEEEECCCCSEEEEEEEEECTTSCE
T ss_pred eeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCC--CcEEEEEcCCCCEEEEEEEEECCCCCE
Confidence 357889999999999999999998765589999999999999999887643 459999999955999999999888988
Q ss_pred EEEeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceee
Q 013661 82 LCYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~ 160 (438)
..++..++..+.+.....+.|++ ++++..+++.+++.+++++||++|++++||++++ |.+|++|+|||++++++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~ 272 (369)
T 3aw8_A 194 AFYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIE 272 (369)
T ss_dssp EECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHH
T ss_pred EEECCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeee
Confidence 88888877777777667788998 9999999999999999999999999999999997 789999999999998888777
Q ss_pred eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEE
Q 013661 161 SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi 240 (438)
+++.++++++++.++|.+++..... ..+++.++++.. + .++.+...|++++++|++ ...+++++|+|+
T Consensus 273 ~~g~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~-~---------~~~~~~~~p~~~~~~~g~-~~~~~~~lg~v~ 340 (369)
T 3aw8_A 273 GAETSQFENHLRAVLGLPLGSTAPR-GQSAMVNLIGEK-P---------PFAEVLKVEGAHLHWYGK-AVRPGRKVGHIT 340 (369)
T ss_dssp HBSSCHHHHHHHHHHTCCCCCCCBC-SEEEEEEEESCC-C---------CHHHHHTSTTEEEEECCC-CCCTTCEEEEEE
T ss_pred eecCCHHHHHHHHHcCCCCCCcccc-ccEEEEEEeCCC-c---------hHHHhccCCCcEEEEecC-CCCCCCeEEEEE
Confidence 8899999999999999999876543 347778888753 1 334456678988889887 667789999999
Q ss_pred EEcCCHHHHHHHHHHHhhcCC
Q 013661 241 IVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 241 ~~G~~~~eA~~ka~~a~~~i~ 261 (438)
+.|+|.+||++++.++++++.
T Consensus 341 ~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 341 LRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp EEESSHHHHHHHHHHHHTTSS
T ss_pred EEcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998775
No 21
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-33 Score=282.22 Aligned_cols=244 Identities=45% Similarity=0.745 Sum_probs=197.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~ 82 (438)
+++.++ +++++|||+|+||..++|+|+|+++++|.+|+.++++ ..++|||||++++|+++.++++.+|++.
T Consensus 121 ~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------~~~lvEe~i~~g~e~sv~~~~~~~G~~~ 191 (380)
T 3ax6_A 121 VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK------GETYLEEFVEIEKELAVMVARNEKGEIA 191 (380)
T ss_dssp CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC------SSEEEEECCCEEEEEEEEEEECSSCCEE
T ss_pred eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc------CCEEEEeccCCCeeEEEEEEECCCCCEE
Confidence 456666 6778999999999876558999999999999987654 3499999999559999999998888988
Q ss_pred EEeeeeeE--EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceee
Q 013661 83 CYPVVETI--HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 83 ~~~~~e~~--~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~ 160 (438)
.++..++. .+.+.....+.|++++++..+++++++.+++++||++|++++||+++++|++||+|+|||++++++++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~ 271 (380)
T 3ax6_A 192 CYPVVEMYFDEDANICDTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIE 271 (380)
T ss_dssp EEEEEEEC--------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHH
T ss_pred EECCeeeeecccCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehh
Confidence 88887766 5556655667898899999999999999999999999999999999988899999999999998888877
Q ss_pred eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCc--cCCC-cchhhhchhhhhccCCcEEEEeccccccCCceeE
Q 013661 161 SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAE--GERG-FYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G 237 (438)
+++.++++++++.++|.+++..... ..+++.++++... +... .. +++++ ..|+++++++++....+++++|
T Consensus 272 ~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~----~~~~~-~~p~~~~~~~g~~~~~~~~~lg 345 (380)
T 3ax6_A 272 ACVTSQFEQHIRAIMNLPLGSTELL-IPAVMVNLLGEEGYYGKPALIG----LEEAL-AIEGLSLHFYGKKETRPYRKMG 345 (380)
T ss_dssp HBSSCHHHHHHHHHTTCCCCCCCBC-SCEEEEEEEBCTTCCBSEEEES----HHHHH-TSTTEEEEECCCSCBCBTCEEE
T ss_pred hccccHHHHHHHHHhCCCCCCcccc-CceEEEEEecccccccccccch----hHHHh-cCCCCEEEecCCCCCCCCCeeE
Confidence 8899999999999999999876543 3367788887643 2111 12 55566 7899999888876556689999
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
+|++.|+|.+||+++++++.+++.
T Consensus 346 ~v~~~g~~~~~a~~~~~~~~~~i~ 369 (380)
T 3ax6_A 346 HFTVVDRDVERALEKALRAKKILK 369 (380)
T ss_dssp EEEEECSSHHHHHHHHHHHTTTCE
T ss_pred EEEEEeCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999998765
No 22
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=4.3e-33 Score=292.74 Aligned_cols=286 Identities=18% Similarity=0.247 Sum_probs=218.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+.|.+++.++++++|||+||||+.++ ||+||++|+|++||.++++.+.. ..+.++||+||+|.+|++|+++.|.+|+
T Consensus 230 v~s~eea~~~a~~iGyPvVVKp~~Gg-GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~ 308 (587)
T 3jrx_A 230 VKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGN 308 (587)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCC-SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSC
T ss_pred cCCHHHHHHHHHhcCCeEEEEeCCCC-CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 67899999999999999999998877 99999999999999999987642 1345999999998899999999998888
Q ss_pred EEEEe-eeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013661 81 ILCYP-VVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 81 ~~~~~-~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~ 158 (438)
++.+. ..+.+++.+.......|++ +++++.+++.+.+.++++++||+|++++||+++++|++||+|+|||++++.+++
T Consensus 309 vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~dG~~yflEINpRl~~e~~vt 388 (587)
T 3jrx_A 309 AVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCT 388 (587)
T ss_dssp EEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEEEEEESSCCTTHHHH
T ss_pred EEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEeCCCCCcccee
Confidence 76644 4466777776666678888 799999999999999999999999999999999888999999999999876666
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCC-------------------------CCCCCceEEEEeecCCccCCCcchhhhchhh
Q 013661 159 IESCYTSQFEQHMRAVVGLPLGDP-------------------------SMKTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~G~~l~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 213 (438)
...+|+|+++++++.++|.|++.. ....++++.+|++++ +|...|.|..+.+..
T Consensus 389 e~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~Ri~ae-dp~~~f~p~~G~i~~ 467 (587)
T 3jrx_A 389 EMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSE-NPDEGFKPSSGTVQE 467 (587)
T ss_dssp HHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEEEEC-----------CCCCEE
T ss_pred ccccCCCHHHHHHHHHCCCCcccchhcccccccccccccccccccccccCCCCceEEEEeeccc-CccccCCCCCcEEEE
Confidence 768999999999999999998721 112356888999987 455567763333332
Q ss_pred hhccCCc-EEEE-ecc---ccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEc-cCCCHHH
Q 013661 214 ALSIPGA-TVHW-YDK---PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMG-SDSDLPV 285 (438)
Q Consensus 214 ~~~~p~~-~~~~-~~~---~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~g-s~sD~~~ 285 (438)
+..|+. .++. ++. ..+.+ ++.++++++.|.|+++|++++.++++++. |.| -.++.++
T Consensus 468 -~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~--------------i~g~~~tn~~~ 532 (587)
T 3jrx_A 468 -LNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS--------------IRGDFRTTVEY 532 (587)
T ss_dssp -EECSSCTTEEEEECCC----------CCEEEEEEEESSHHHHHHHHHHHHHHHH--------------HSSTTSSTTHH
T ss_pred -EEeCCCCceEEeccccccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccE--------------EeCCCCCcHHH
Confidence 223322 2221 111 01222 57799999999999999999999999864 245 4688999
Q ss_pred HHHHHHHHHHcCCcEEEEEe
Q 013661 286 MKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~~~~v~ 305 (438)
+..+...-+.....++++++
T Consensus 533 ~~~~~~~~~f~~g~~~t~~~ 552 (587)
T 3jrx_A 533 LINLLETESFQNNDIDTGWL 552 (587)
T ss_dssp HHHHHTSHHHHTTCSCCGGG
T ss_pred HHHHhCChhhccCCcchhHH
Confidence 99998777776666666543
No 23
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=1.8e-32 Score=276.86 Aligned_cols=250 Identities=25% Similarity=0.342 Sum_probs=204.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~e~sv~~~~d~~ 78 (438)
+++.+++.++++++|||+||||..++ +|+|+++++|.+|+.++++.+.. ....++|||||+++.|+++.++++.+
T Consensus 134 ~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 134 ADSESLFREAVADIGYPCIVKPVMSS-SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEESCC----CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 57889999999999999999998765 99999999999999999887532 13459999999966999999999877
Q ss_pred CeEEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013661 79 KSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~ 158 (438)
| +..++..++....++....+.|++++++..+++.+++.+++++||++|++++||+++++ .+||+|+|||++++++++
T Consensus 213 g-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~ 290 (391)
T 1kjq_A 213 G-VHFCAPVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVT 290 (391)
T ss_dssp E-EEECCCEEEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGH
T ss_pred C-eEEccCcceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECCCCCCccee
Confidence 6 45556556666667776777899999999999999999999999999999999999976 799999999999988887
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccC-CCcchhhhchhhhhccCCcEEEEeccccccCCceeE
Q 013661 159 IESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G 237 (438)
...+++|+++++++.++|.+++.... ...+++.++++...+. ..+. ++++... |++++++++++....++++|
T Consensus 291 ~~~~g~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-pg~~v~~~~~~~~~~~~~lg 364 (391)
T 1kjq_A 291 LISQDLSEFALHVRAFLGLPVGGIRQ-YGPAASAVILPQLTSQNVTFD----NVQNAVG-ADLQIRLFGKPEIDGSRRLG 364 (391)
T ss_dssp HHHBSSCHHHHHHHHHTTCCCCCCCB-CSSEEEEEECCEEEESSCEEE----CGGGSCB-TTEEEEECCCCCEEEECCCE
T ss_pred eeecCcCHHHHHHHHHcCCCCCCccc-cCcEEEEEEEccCcccccccc----cHHHHhC-CCCEEEEeccCCCCCCCeEE
Confidence 76779999999999999999876543 3446777877754221 1122 5555666 99988888876555678999
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
+|++.|+|.++|+++++++++++.
T Consensus 365 ~v~~~g~~~~~a~~~~~~~~~~i~ 388 (391)
T 1kjq_A 365 VALATAESVVDAIERAKHAAGQVK 388 (391)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCE
T ss_pred EEEEecCCHHHHHHHHHHHHhhhe
Confidence 999999999999999999998764
No 24
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=2.3e-32 Score=281.07 Aligned_cols=282 Identities=16% Similarity=0.189 Sum_probs=219.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+.+.+++.++++++|||+||||..++ ||+||++++|++|+.++++.+... .+.+++||||+|.+|+++++++
T Consensus 141 ~~~~~~e~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 219 (446)
T 3ouz_A 141 ALAGAEAAKKLAKEIGYPVILKAAAGG-GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIG 219 (446)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC-TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 467999999999999999999998876 999999999999999998765311 3459999999988999999999
Q ss_pred cCCCeEEEEeee-eeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|.+|+++.++.. +..++.+.......|+ .++++..+++.+++.++++++||+|++++||+++++|++||+|+|||+++
T Consensus 220 d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR~~g 299 (446)
T 3ouz_A 220 DSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQV 299 (446)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCT
T ss_pred cCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECCCCC
Confidence 988888766544 4566666666667788 49999999999999999999999999999999998888999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCC-C-CCCceEEEEeecCCccCCCcchhhhchhhhhccC---CcEEEE--ec
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS-M-KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GATVHW--YD 226 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~~~~~--~~ 226 (438)
+.+++...+|+|+++++++.++|.+++... . ..++++..+++++.. ..|.|.. +.-.....| ++.+.. +.
T Consensus 300 ~~~~~~~~~G~dl~~~~~~~~~G~~l~~~~~~~~~g~ai~~ri~ae~~--~~~~p~~-G~i~~~~~p~~~~vr~~~~~~~ 376 (446)
T 3ouz_A 300 EHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHSIECRITAEDS--KTFLPSP-GKITKYIPPAGRNVRMESHCYQ 376 (446)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCGGGCCCCSEEEEEEEESBCT--TTCCBCC-EECSEEECCCSTTEEEEECCCT
T ss_pred cceeeeeeeCCCHHHHHHHHHCCCCCCcCCCCCcceEEEEEEeeccCC--CccCCCC-cEEeEEecCCCCCEEEEccccc
Confidence 666666678999999999999999997211 1 234567788887643 3455422 222223344 333322 22
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEE
Q 013661 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHE 301 (438)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~ 301 (438)
+..+.+ ++++|+|++.|+|++||++++.++++++. |.|-.++.+++..+...-+.....++
T Consensus 377 G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~--------------i~g~~~~~~~~~~~~~~~~~~~~~~~ 439 (446)
T 3ouz_A 377 DYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELL--------------ISGIKTTKDFHLSMMENPDFINNNYD 439 (446)
T ss_dssp TCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCE--------------EESSCCTHHHHHHHHTCHHHHTTCCC
T ss_pred CCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCE--------------EeCccCCHHHHHHHhCChhhccCCcc
Confidence 222222 56799999999999999999999999763 46778999999998876655544433
No 25
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=6.9e-33 Score=290.02 Aligned_cols=285 Identities=18% Similarity=0.239 Sum_probs=204.3
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+.|.+++.++++++|||+||||+.++ ||+||++|+|++||.++++.+.. ..+.++|||||+|++|++++++.|.+|+
T Consensus 214 v~s~~ea~~~a~~igyPvVVKp~~gg-GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~ 292 (540)
T 3glk_A 214 VKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGN 292 (540)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCC-----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSEEEEEEEEEECTTSC
T ss_pred cCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 67899999999999999999998877 99999999999999999987642 1345999999998799999999998888
Q ss_pred EEEEe-eeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce
Q 013661 81 ILCYP-VVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 81 ~~~~~-~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~ 158 (438)
++.+. ..+.+++.+.......|++ ++++..+++.+.+.++++++||+|++++||+++++|++||+|+|||++++.+++
T Consensus 293 vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~dg~~~~lEiNpR~~~~~~vt 372 (540)
T 3glk_A 293 AVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCT 372 (540)
T ss_dssp EEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEECSCCTTHHHH
T ss_pred EEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEEEECCCCCcchhh
Confidence 76654 3355655555445567888 799999999999999999999999999999999888999999999999876667
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCCC-------------------------CCCCceEEEEeecCCccCCCcchhhhchhh
Q 013661 159 IESCYTSQFEQHMRAVVGLPLGDPS-------------------------MKTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~G~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 213 (438)
...+|+|+++++++.++|.|++... ...++++.+|++++ +|...|.|..+.+..
T Consensus 373 e~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ri~ae-dp~~~f~p~~G~i~~ 451 (540)
T 3glk_A 373 EMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSE-NPDEGFKPSSGTVQE 451 (540)
T ss_dssp HHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEEEEC-------------CCEEE
T ss_pred HhHhCCCHHHHHHHHHCCCCcccccccccccccccccccccccccccccCCCceeEEEEEEecc-CCcccccCCceEEEE
Confidence 7789999999999999999987211 12356888999987 454567763333322
Q ss_pred hhccCCc-EEEE-ecc---ccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEc-cCCCHHH
Q 013661 214 ALSIPGA-TVHW-YDK---PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMG-SDSDLPV 285 (438)
Q Consensus 214 ~~~~p~~-~~~~-~~~---~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~g-s~sD~~~ 285 (438)
+..|+. .++. ++. ..+.+ ++.++++++.|.|+++|++++.++++++.. .| -.++.++
T Consensus 452 -~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i--------------~g~~~tn~~~ 516 (540)
T 3glk_A 452 -LNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSI--------------RGDFRTTVEY 516 (540)
T ss_dssp -CCCSSCCSEEEEEEC------------CEEEEEEEESSHHHHHHHHHHHHHHHTC--------------C----HHHHH
T ss_pred -EEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCCHHHHHHHHHHHHhccEE--------------ecccCCcHHH
Confidence 223332 2221 111 11222 577999999999999999999999998753 34 3578899
Q ss_pred HHHHHHHHHHcCCcEEEEE
Q 013661 286 MKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 286 ~~~~~~~l~~~G~~~~~~v 304 (438)
+..+...-+.....+++++
T Consensus 517 ~~~~~~~~~f~~~~~~t~~ 535 (540)
T 3glk_A 517 LINLLETESFQNNDIDTGW 535 (540)
T ss_dssp HHHHHHSHHHHHTCC----
T ss_pred HHHHhCChhhcCCCccchh
Confidence 9998877666665666654
No 26
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=3e-32 Score=279.10 Aligned_cols=254 Identities=26% Similarity=0.340 Sum_probs=202.0
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCCeEEEEEEEEcC-
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR- 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~lvEe~I~g~~e~sv~~~~d~- 77 (438)
+++.+++.++++++|||+||||..++ ||+|+++++|++|+.++++.+.. ....++|||||+++.|+++.++++.
T Consensus 142 ~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 220 (433)
T 2dwc_A 142 ATTLDELYEACEKIGYPCHTKAIMSS-SGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFD 220 (433)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEECCC-------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEEC
T ss_pred eCCHHHHHHHHHhcCCCEEEEECCCc-CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEeccc
Confidence 57889999999999999999998765 99999999999999999876542 1346999999995599999999875
Q ss_pred -CCe--EEEEeeeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 78 -DKS--ILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 78 -~G~--~~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+|+ ...++..++....++....+.|++++++..+++.+++.+++++||++|++++||+++++ .+||+|+|||++++
T Consensus 221 ~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 221 ENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp TTSCEEEEEECCEEEEESSSSEEEEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred CCCCEeEEEecccceEEEcCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 787 45556556665667777778899999999999999999999999999999999999976 79999999999998
Q ss_pred CCceee--eccCcHHHHHHHHHhCCCCCC-------CCCCCCceEEEEeecCCccC-CCcchhhhchhhhhccCCcEEEE
Q 013661 155 GHHTIE--SCYTSQFEQHMRAVVGLPLGD-------PSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHW 224 (438)
Q Consensus 155 g~~~~~--~~~~~~~~~~~~~~~G~~l~~-------~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~ 224 (438)
++++.. .+++|+++++++.++|.+++. .......+++.++++...+. ..+. ++++....|++++++
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~~~~~~~~i~----g~~~~~~~pg~~v~~ 375 (433)
T 2dwc_A 300 GMVTLASHPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGYSPRFR----GLVKALSVPNATVRL 375 (433)
T ss_dssp GGGHHHHSCTTCSHHHHHHHHHHTCCCCCEEETTEEEECCSSCEEEEEEECSSCEESCEEE----CHHHHTTSTTEEEEE
T ss_pred cceehhHhccCCCHHHHHHHHHcCCCCCcccccccccccccccEEEEEEEcCCCCcCcCcc----hHHHHhhCCCcEEEE
Confidence 777654 348999999999999999874 11122446778888764221 1122 566677889998889
Q ss_pred eccccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 225 YDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 225 ~~~~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
++++....++++|+|++.|+|++||+++++++++.+..
T Consensus 376 ~~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~~ 413 (433)
T 2dwc_A 376 FGKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMIEL 413 (433)
T ss_dssp CCCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred ecCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhheEE
Confidence 88777777899999999999999999999999998753
No 27
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=2.1e-32 Score=273.95 Aligned_cols=243 Identities=32% Similarity=0.560 Sum_probs=166.9
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEe
Q 013661 6 LESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 6 ~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~ 85 (438)
.+++.++++++|||+|+||..++++|+|+++++|.+|+.++++.+.. ...++|||||++++|+++.+++|.+|++..++
T Consensus 115 ~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~-~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 193 (365)
T 2z04_A 115 RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK-EESFIIEEFVKFEAEISCIGVRDREGKTYFYP 193 (365)
T ss_dssp -------------CEEEECC-------------------------------CEEEECCCCSEEEEEEEEECTTCCEEECC
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc-CCCEEEEccCCCCEEEEEEEEECCCCCEEEEC
Confidence 67888888899999999998765589999999999999998876532 24599999999559999999998889988888
Q ss_pred eeeeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccCc
Q 013661 86 VVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTS 165 (438)
Q Consensus 86 ~~e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~~~~ 165 (438)
..+...+.+.....+.|+++ .+++.+++.+++++||++|++++||+++++|++|++|+|||++++++++..+++.+
T Consensus 194 ~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~~~~~~ 269 (365)
T 2z04_A 194 QPFNKHEEGILIYNYVPYAK----LKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTS 269 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEC----CHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSC
T ss_pred CEEEEEeCCEeEEEECCHhH----HHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEeeccccC
Confidence 88777777766666677766 45689999999999999999999999998888999999999998888887788899
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEEEeccccccCCceeEEEEEEcCC
Q 013661 166 QFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSS 245 (438)
Q Consensus 166 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~Vi~~G~~ 245 (438)
+++++++.++|.+++..... ..+++.++++..... . .++.+...|++++++|++ ...+++++|+|++.|+|
T Consensus 270 ~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~g~-~~~~~~~lg~v~~~g~~ 340 (365)
T 2z04_A 270 QFENLLRAITEMPLGSTELK-LPSGMVNILGKSYEE---I----PLKEILSVEGAKLYWYGK-EKKPRRKVGHVNVVGRS 340 (365)
T ss_dssp HHHHHHHHHTTCCCCCCCBS-SCEEEEEEESCCGGG---S----CHHHHTTSTTEEEEECCC-CCCTTCEEEEEEEECSS
T ss_pred HHHHHHHHHhCCCCCCcccc-CCEEEEEEECCcccc---c----hHHHHhcCCCCEEEecCC-CCCCCCeEEEEEEecCC
Confidence 99999999999999876543 347788888764211 1 444555678988888876 66678999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 013661 246 MGLVESRLNSLLKEDSS 262 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~ 262 (438)
.++|.++++++.+++..
T Consensus 341 ~~~a~~~~~~~~~~i~~ 357 (365)
T 2z04_A 341 KEEVVEKVERVFTLLKG 357 (365)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999998753
No 28
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.98 E-value=1.4e-30 Score=268.00 Aligned_cols=287 Identities=16% Similarity=0.176 Sum_probs=216.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ ||+|+++++|.+|+.++++.+.. ....++|||||+|++|+++.++.
T Consensus 136 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 1ulz_A 136 VLKSLEEAKALAREIGYPVLLKATAGG-GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLG 214 (451)
T ss_dssp SCCCHHHHHHHHHHHCSSEEEEECSSS-SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEE
Confidence 467899999999999999999998876 89999999999999998876521 12459999999987899999999
Q ss_pred cCCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+.+|++..++.. +...+.+.......|+. ++++..+++.+.+.+++++||++|++++||+++++|++||+|+|||+++
T Consensus 215 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R~~~ 294 (451)
T 1ulz_A 215 DKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 294 (451)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSCCT
T ss_pred cCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCCCCc
Confidence 888887655532 33444455455567886 9999999999999999999999999999999998888999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCC--CC-CCceEEEEeecCCccCCCcchhhhchhhhhc---cCCcE--EEEe
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MK-TPAAIMYNLLGEAEGERGFYLAHQLIGKALS---IPGAT--VHWY 225 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~p~~~--~~~~ 225 (438)
+.+++...+++|+++.+++.++|.+++... .. ...+++.++++... ...+.|.. +.-..+. .|++. .+++
T Consensus 295 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~p~~-g~i~~~~~~~~~~v~~~~~~~ 372 (451)
T 1ulz_A 295 EHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDP-KKNFAPST-RVIERYYVPGGFGIRVEHAAA 372 (451)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCCGGGCCCCSEEEEEEEESEEG-GGTTEECC-SBCCSEECCCSTTEEEEECCC
T ss_pred cchHHHHHhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEeccccCc-ccCcCCCC-ceeceEECCCCCCcccccCcc
Confidence 655566678999999999999999987322 11 23466777776532 11222211 1111112 24553 3345
Q ss_pred ccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 226 DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 226 ~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
.+..+.+ ++++|+|++.|+|.+||++++.++++.+.. .|-.+|...+..+...-+.....++++
T Consensus 373 ~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~--------------~g~~~~i~~~~~~~~~~~~~~~~~~~~ 438 (451)
T 1ulz_A 373 RGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEI--------------TGVKTTIPLLINIMKEKDFKAGKFTTK 438 (451)
T ss_dssp TTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE--------------CSSCCSHHHHHHHHHCHHHHHTCCCTT
T ss_pred CCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEE--------------eCccCCHHHHHHHhCCHHHhcCCCcch
Confidence 5444443 678999999999999999999999997652 335688999888877666555555555
Q ss_pred Ee
Q 013661 304 IV 305 (438)
Q Consensus 304 v~ 305 (438)
++
T Consensus 439 ~~ 440 (451)
T 1ulz_A 439 YL 440 (451)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 29
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.98 E-value=1.8e-30 Score=267.29 Aligned_cols=285 Identities=17% Similarity=0.187 Sum_probs=214.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ ||+|+++++|.+|+.++++.+.. ....++|||||+|.+|+++.+++
T Consensus 136 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 2vpq_A 136 LMKDVSEAKKIAKKIGYPVIIKATAGG-GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVG 214 (451)
T ss_dssp CBSCHHHHHHHHHHHCSSEEEEETTCC-TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEE
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEE
Confidence 467899999999999999999998876 89999999999999998876521 12459999999987899999999
Q ss_pred cCCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEe-CCCcEEEEEEcCCCC
Q 013661 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPH 152 (438)
Q Consensus 76 d~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~ 152 (438)
+.+|++..++.. +...+.........|++ ++++..+++.+++.++++++|++|++++||+++ ++|++||+|+|||++
T Consensus 215 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~ 294 (451)
T 2vpq_A 215 DSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQ 294 (451)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred cCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCC
Confidence 888887665532 23444444455567887 999999999999999999999999999999999 788899999999999
Q ss_pred CCCCceeeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeecCCccCCCcchhhhchhhhhcc---CCc--EEEE
Q 013661 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSI---PGA--TVHW 224 (438)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---p~~--~~~~ 224 (438)
++.+++...+++|+++.+++.++|.+++.... . ...+++.++++.. +...+.|.. +.-..... |++ ++++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~p~~-g~i~~~~~~~~~~v~~~~~~ 372 (451)
T 2vpq_A 295 VEHPVTEMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAEN-PYKNFMPSP-GKIEQYLAPGGYGVRIESAC 372 (451)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCCSCCGGGCCCCSEEEEEEEESEE-GGGTTEECC-SBCSEEECCCSTTEEEECCC
T ss_pred CceehhhHHhCCCHHHHHHHHHCCCCCCCcccccCcCceEeeeEeeeec-cccccCCCC-CEEeEEECCCCCCccccccc
Confidence 87666667789999999999999999874321 1 2346677777653 211232211 11111222 343 3334
Q ss_pred eccccc--cCCceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE
Q 013661 225 YDKPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV 302 (438)
Q Consensus 225 ~~~~~~--~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~ 302 (438)
+.+... ..++++|+|++.|+|.++|++++.++++++. +.|-.++.++...+...-......+++
T Consensus 373 ~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 438 (451)
T 2vpq_A 373 YTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFV--------------VLGIDTTIPFHIKLLNNDIFRSGKFNT 438 (451)
T ss_dssp CTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCE--------------EESSCCSHHHHHHHHTCHHHHHTCCCT
T ss_pred ccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccE--------------EeCcCCCHHHHHHHhCCHhhhcCCCcc
Confidence 444333 2367899999999999999999999998764 356678888888887655554444444
Q ss_pred E
Q 013661 303 R 303 (438)
Q Consensus 303 ~ 303 (438)
+
T Consensus 439 ~ 439 (451)
T 2vpq_A 439 N 439 (451)
T ss_dssp T
T ss_pred H
Confidence 4
No 30
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.97 E-value=2.4e-32 Score=292.83 Aligned_cols=286 Identities=21% Similarity=0.242 Sum_probs=218.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++.++++++|||+||||+.++ ||+||++|+|++||.++++.+... ++.++|||||+|.+|++++++.|
T Consensus 164 ~~s~~e~~~~a~~igyPvvvKp~~G~-Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d 242 (675)
T 3u9t_A 164 AQDLETFRREAGRIGYPVLLKAAAGG-GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFAD 242 (675)
T ss_dssp CCCTTHHHHHHHHSCSSBCCBCCC-------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEEC
T ss_pred CCCHHHHHHHHHhCCCcEEEEECCCC-CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEc
Confidence 56889999999999999999998877 999999999999999998765321 34699999999889999999999
Q ss_pred CCCeEEEEee-eeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPV-VETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~-~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++.+.. .+.+++.+.......|++ ++++.++++.+++.++++++||+|++++||+++++|++||+|+|||++++
T Consensus 243 ~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~dG~~~~iEiNpR~~~~ 322 (675)
T 3u9t_A 243 RHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVE 322 (675)
T ss_dssp SSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCTTSCBCBCEEESSCCTT
T ss_pred CCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEeccccccCC
Confidence 9998776543 345555565556677887 99999999999999999999999999999999988899999999999985
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCCC---CCceEEEEeecCCccCCCcchhhhchhhhh---ccCCcEEEE--ec
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGKAL---SIPGATVHW--YD 226 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~p~~~~~~--~~ 226 (438)
.+++...+|+|+++++++.++|.+++..... .++++.++++++. +...|.|....+..+. ..|++.+.. +.
T Consensus 323 ~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aed-p~~~f~P~~G~l~~~~~p~~~~gvr~d~~~~~ 401 (675)
T 3u9t_A 323 HPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAED-PEGDFLPASGRLMLYREAAAGPGRRVDSGVRE 401 (675)
T ss_dssp HHHHHHTTTCCHHHHHHHHHTTCCCSCCTTTCCCCSEEEEEEEESCC-TTTTSCCCCCBCSEEECCCCCTTEEEEESCCT
T ss_pred chhhhhhcCCCHHHHHHHHHCCCCCCCCccccccCcceeEEEEEecc-CcccccCCCCEEEEEECCCCCCCEEEEecccC
Confidence 5555567899999999999999999765422 3557788888764 4344655322222221 224554433 23
Q ss_pred cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013661 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 227 ~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v 304 (438)
+..+.+ ++++|++++.|+|+++|++++.++++++. |.|-.++.+++..+...-+.....+++++
T Consensus 402 G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~--------------i~g~~tn~~~~~~~~~~~~~~~~~~~t~~ 467 (675)
T 3u9t_A 402 GDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETS--------------VGGLRTNLAFLRRILGHPAFAAAELDTGF 467 (675)
T ss_dssp TCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCE--------------EESSCCTHHHHHHHHTCHHHHTTCCCTTH
T ss_pred CCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEE--------------EECccCCHHHHHHHhCCHHHhCCCcccch
Confidence 334443 67899999999999999999999999763 46778899999998877666655555443
No 31
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.97 E-value=1.3e-31 Score=287.52 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=172.0
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+.+.+++.++++++|||+||||+.++ ||+||++++|++|+.++++.+... ++.++|||||+|.+|++++++.|
T Consensus 138 ~~s~~e~~~~a~~igyPvVvKp~~gg-ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d 216 (681)
T 3n6r_A 138 IEDADEAVKISNQIGYPVMIKASAGG-GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCD 216 (681)
T ss_dssp ------------------------------------------------------------------CCSCEEEEEEEECC
T ss_pred cCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEe
Confidence 56788999999999999999998876 999999999999999998765321 24699999999889999999999
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+|+++.++.. +.+++.+.......|++ +++++++++.+.+.++++++||+|++++||+++++|++||+|+|||++++
T Consensus 217 ~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 217 SHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVE 296 (681)
T ss_dssp SSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECSCCTT
T ss_pred CCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccccCCC
Confidence 88888777654 35666777666778887 99999999999999999999999999999999988899999999999986
Q ss_pred CCceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecCCccCCCcchhhhchhhhhccC-------------
Q 013661 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP------------- 218 (438)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p------------- 218 (438)
.+++...+|+|+++++++.++|.+++.... ..++++..+++++. +...|.|....+.. +..|
T Consensus 297 ~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aed-p~~~f~p~~G~i~~-~~~p~~~~~~~~~~~~~ 374 (681)
T 3n6r_A 297 HPVTELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAED-PYRGFLPSIGRLTR-YRPPAETAAGPLLVNGK 374 (681)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSCCCSSCTTTCCCCSEEEEEEEESEE-GGGTTEECCEECSC-EECCCC-----------
T ss_pred cHHhHHHhCCCHHHHHHHHHCCCCCCCCccccceeEEEEEEEEecCC-cccccCCCCcEEEE-EECCCCCcccccccccc
Confidence 555666789999999999999999875432 23557778888763 43445553222221 2223
Q ss_pred ----------CcEE--EEeccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHH
Q 013661 219 ----------GATV--HWYDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLP 284 (438)
Q Consensus 219 ----------~~~~--~~~~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~ 284 (438)
++++ .++.+..+.+ ++.+|++++.|.|+++|++++.++++++. |.|-.++.+
T Consensus 375 w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~~--------------i~g~~tn~~ 440 (681)
T 3n6r_A 375 WQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFE--------------VEGIGHNLP 440 (681)
T ss_dssp ---------CCEEEEESCCTTCEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHCE--------------ECSSCCSHH
T ss_pred cccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcCE--------------EECccCCHH
Confidence 2322 2233333433 57799999999999999999999999863 466788999
Q ss_pred HHHHHHHHHHHcCCcEEEE
Q 013661 285 VMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~ 303 (438)
++..+...-+.....++++
T Consensus 441 ~~~~~~~~~~f~~~~~~t~ 459 (681)
T 3n6r_A 441 FLSAVMDHPKFISGDMTTA 459 (681)
T ss_dssp HHHHHHHCHHHHHCCCCSS
T ss_pred HHHHHhCCHhhccCCcccc
Confidence 9999887666554444443
No 32
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.97 E-value=2.3e-29 Score=258.82 Aligned_cols=282 Identities=17% Similarity=0.218 Sum_probs=212.0
Q ss_pred ccCCHHHH-HHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEE
Q 013661 2 EVNDLESA-RRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~-~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~ 74 (438)
.+++.+++ .++++++|||+||||..++ ||+|+++++|.+|+.++++.+.. ....++|||||+|++|++++++
T Consensus 137 ~~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~ 215 (449)
T 2w70_A 137 PLGDDMDKNRAIAKRIGYPVIIKASGGG-GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVL 215 (449)
T ss_dssp CCCSCHHHHHHHHHHHCSSEEEEETTCC-TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHhCCcEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEE
Confidence 45688899 9999999999999998876 89999999999999998876521 1245999999998799999999
Q ss_pred EcCCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013661 75 RGRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 75 ~d~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
++.+|+++.++.. +...+.+.......|+. ++++..+++.+.+.+++++||++|++++||++++ |.+||+|+|||++
T Consensus 216 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R~~ 294 (449)
T 2w70_A 216 ADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRIQ 294 (449)
T ss_dssp ECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECSCC
T ss_pred EcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECCCC
Confidence 9888887655532 33445555555667887 9999999999999999999999999999999997 7799999999999
Q ss_pred CCCCceeeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeecCCccCCCcchhhhc-hhhh--hccCCcE--EEE
Q 013661 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQL-IGKA--LSIPGAT--VHW 224 (438)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~--~~~p~~~--~~~ 224 (438)
++.+++...+|+|+++.+++.++|.+++.... . ...+++.++++... ..+.|.. + +..+ ...|++. .++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-g~i~~~~~~~~~~v~~~~~~ 371 (449)
T 2w70_A 295 VEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP--NTFLPSP-GKITRFHAPGGFGVRWESHI 371 (449)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHHTCCCSSCGGGCCCCSEEEEEEEECBCT--TTCCBCC-EECCEEECCCSTTEEEECCC
T ss_pred ccchHHHHHhCCCHHHHHHHHHCCCCCCCchhccccceeEEEEeecccCc--cccCCCC-CEeceEECCCCCcEEEEecc
Confidence 87666666789999999999999999863221 1 23456677776532 2232210 2 1111 1124443 234
Q ss_pred eccccc--cCCceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEE
Q 013661 225 YDKPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV 302 (438)
Q Consensus 225 ~~~~~~--~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~ 302 (438)
+.+..+ ..++++|+|++.|+|.+||++++.++++.+.. .|-.+|...+..+...-+.....+++
T Consensus 372 ~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~--------------~g~~~~i~~~~~~~~~~~~~~~~~~~ 437 (449)
T 2w70_A 372 YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII--------------DGIKTNVDLQIRIMNDENFQHGGTNI 437 (449)
T ss_dssp CTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEE--------------ESSCCSHHHHHHHHTCHHHHHCCCCT
T ss_pred ccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEE--------------eCcCCCHHHHHHHHcChhhccCCcee
Confidence 444333 23678999999999999999999999998752 34578999988887665554444433
No 33
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.97 E-value=3e-29 Score=282.22 Aligned_cols=347 Identities=17% Similarity=0.208 Sum_probs=197.1
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
+++.+++.++++++|||+||||..++ ||+||++|+|++|+.++++.+.. ....++|||||+|.+|+++++++|
T Consensus 166 v~s~eea~~~a~~iGyPvVVKP~~Gg-GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~D 244 (1236)
T 3va7_A 166 IKDAKEAKEVAKKLEYPVMVKSTAGG-GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGD 244 (1236)
T ss_dssp --------------------------------------------------------------------CCEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEec
Confidence 56788999999999999999998876 99999999999999999876532 235599999999889999999999
Q ss_pred CCCeEEEEeee-eeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013661 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~ 153 (438)
++|+++.++.. +..++.+.......|++ +++++.+++.+.+.++++++||+|++++||+++++ |.+||+|||||+++
T Consensus 245 g~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 245 GFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp SSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred CCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 98887766554 45566666666778886 99999999999999999999999999999999974 78999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCC--C-CCCceEEEEeecCCccCCCcchhhhchhhhhccCC-cEEEE--ecc
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--M-KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVHW--YDK 227 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~-~~~~~--~~~ 227 (438)
+.+++...+|+|+++++++.++|.+++... . ..++++.++++++. +...|.|....+.. ...|. +++.. +.+
T Consensus 325 ~~~~te~vtGvDlv~~~l~~a~G~~l~~~~~~~~~~g~Ai~~riyaed-p~~~f~p~~G~i~~-~~~p~gvrvd~~v~~G 402 (1236)
T 3va7_A 325 EHPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAEN-PVKDFRPSPGQLTS-VSFPSWARVDTWVKKG 402 (1236)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCGGGCCCCCCSEEEEEEEESEE-TTTTTEECCEECCE-EECCTTSEEEECCCTT
T ss_pred ccHHHHHHHCCCHHHHHHHHHCCCCCCCccccccccceEEEEEEecCC-cccccCCCCceEEE-EEcCCccEecccccCC
Confidence 555666678999999999999999887432 1 23456777887763 33344442212222 23333 33322 222
Q ss_pred ccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe
Q 013661 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 228 ~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~ 305 (438)
..+.+ ++++|+|++.|+|++||++++.++++++. +.|-.++.+++..+...-......+++++
T Consensus 403 ~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~--------------i~G~~tn~~~~~~~~~~~~f~~~~~~t~~- 467 (1236)
T 3va7_A 403 TNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETA--------------VYGCITNIDYLRSIASSKMFKEAKVATKV- 467 (1236)
T ss_dssp CEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE--------------EESSCCSHHHHHHHHHCHHHHHTCCCTTG-
T ss_pred CEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEE--------------EeCcccCHHHHHHHhCCHHHhCCCCcchh-
Confidence 23332 57899999999999999999999999763 46778999999999877666555554442
Q ss_pred cCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhhHH--HhhhCCCCCceEE
Q 013661 306 SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLL--SIVQMPRGVPVAT 381 (438)
Q Consensus 306 s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~--s~~~~~~g~p~~t 381 (438)
+++....--.+.|.-+|.-..+=+. -|+.-.-=+|||+++ .+|-...-+ +-+.-|.+-++.-
T Consensus 468 ------------~~~~~~~~~~i~v~~~G~~ttvQD~-pGR~G~~~~Gv~~sG-amD~~a~~~aN~LvgN~~~~a~lE 531 (1236)
T 3va7_A 468 ------------LDSFDYKPCAFEVLAPGANTSVQDY-PGRTGYWRIGVPPSG-PMDSYSFRLANRVVGNNSKSPALE 531 (1236)
T ss_dssp ------------GGGCCCCCSEEEEEECCSSCEEECS-SCSCSCTTTTCCCCS-CSSHHHHHHHHHHTTCCTTCCEEE
T ss_pred ------------hhhcCcCCCeeEEEcCCccchhhhc-cCCccccccCCCCCC-chhHHHHHHHHHHhCCCCCCcEEE
Confidence 2221111122444455544333332 144555667888864 466554112 2233377766663
No 34
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.97 E-value=3.4e-28 Score=250.98 Aligned_cols=282 Identities=16% Similarity=0.186 Sum_probs=203.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ ||+||++++|.+|+.++++.+.. ....++|||||+|.+|++++++.
T Consensus 142 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 220 (461)
T 2dzd_A 142 PVDGLEDVVAFAEAHGYPIIIKAALGG-GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILG 220 (461)
T ss_dssp CCSSHHHHHHHHHHHCSCEEEEESTTC-SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEE
Confidence 467899999999999999999998876 89999999999999998876421 12459999999987999999999
Q ss_pred cCCCeEE-EEeeeeeEEecCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSIL-CYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~-~~~~~e~~~~~g~~~~~~~p~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+.+|+++ .++..+...+.+.....+.|+ .++++..+++.+.+.++++++|+.|.+++||++++ |.+||+|+|||+++
T Consensus 221 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 221 DYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQV 299 (461)
T ss_dssp CTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-TEEEEEEEESSCCG
T ss_pred cCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCEEEEEEECCCCC
Confidence 8888865 344444555555555566787 59999999999999999999999999999999997 77999999999997
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCC--C-------CCCceEEEEeecCCccCCCcchhhhchhhhhccC-CcEEE
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--M-------KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP-GATVH 223 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~--~-------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p-~~~~~ 223 (438)
+.+++...+|+|+++.+++.++|.+++... . ..+.++..+++.. .+...|.|....+.. ...+ +..++
T Consensus 300 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~-~~~~~~~p~~g~i~~-~~~~~~~~v~ 377 (461)
T 2dzd_A 300 EHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTE-DPLNNFMPDTGKIMA-YRSGGGFGVR 377 (461)
T ss_dssp GGHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESE-EGGGTTEECCEECSE-EECCCCTTEE
T ss_pred ceeeEEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeeccc-CCccCccCCCCeeeE-EecCCCCCeE
Confidence 655566677999999999999999987542 1 1122333444432 122223321111111 1112 11122
Q ss_pred Eec-----cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc
Q 013661 224 WYD-----KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 224 ~~~-----~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~ 296 (438)
+.+ +..+.+ ++++|+|++.|+|++||+++++++++++.. .|..+|......+...-+..
T Consensus 378 ~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~--------------~g~~~~i~~~~~~~~~~~~~ 443 (461)
T 2dzd_A 378 LDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRI--------------RGIKTNIPFLENVVQHPKFL 443 (461)
T ss_dssp EEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE--------------ESSCCSHHHHHHHHHSHHHH
T ss_pred eecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEE--------------eCCcCCHHHHHHHhCChhhh
Confidence 221 111111 455999999999999999999999998652 34478888877655444444
Q ss_pred CCcEE
Q 013661 297 SVPHE 301 (438)
Q Consensus 297 G~~~~ 301 (438)
...++
T Consensus 444 ~~~~~ 448 (461)
T 2dzd_A 444 SGEYD 448 (461)
T ss_dssp TSCCC
T ss_pred CCCcc
Confidence 44433
No 35
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.97 E-value=7.2e-29 Score=252.54 Aligned_cols=251 Identities=14% Similarity=0.097 Sum_probs=183.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC----C--CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----F--DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~----~--~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ +|+||++++|.+|+.++++.+.. . .+.++|||||+| +|+++++++
T Consensus 126 ~~~~~~e~~~~~~~~g~PvvvKp~~~~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~E~sv~~~~ 203 (412)
T 1vkz_A 126 VAETPEELREKIKKFSPPYVIKADGLA-RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVV 203 (412)
T ss_dssp EESSHHHHHHHHTTSCSSEEEEESSCC-SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-cEEEEEEEE
Confidence 367899999999999999999998876 89999999999999999877631 1 136999999995 999999998
Q ss_pred cCCCeEEEEeeeeeEEec--Ce------EEEEEeCCCCCHHHHHHHHHHHHHHHHhc-----CcceEEEEEEEEeCCCcE
Q 013661 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAAVPWKISELATDVAHKAVSSL-----EGAGIFAVELFWTNNGQI 142 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g~------~~~~~~p~~l~~~~~~~i~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~ 142 (438)
|++ .++.+...++..+. ++ .+.++.|+++++++.+++++++.+++++| +|+|++++||+++++| +
T Consensus 204 dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~ 281 (412)
T 1vkz_A 204 NGR-NFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-P 281 (412)
T ss_dssp ETT-EEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-E
T ss_pred CCC-EEEEeeeeEeeeeccCCCCCCCCCCceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-c
Confidence 543 33334332332221 11 12356788899999999999999999999 8899999999999888 9
Q ss_pred EEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhhhhccCCcE
Q 013661 143 LLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGAT 221 (438)
Q Consensus 143 ~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~ 221 (438)
||+|+|||+++++++++. .++.|+.+.+++.+.| +++...... ..++.++++.......+.+ +....+..|+ +
T Consensus 282 ~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g-~l~~~~~~~-~~a~~~~l~~~~~~~~~~~---g~~i~l~~~~-~ 355 (412)
T 1vkz_A 282 YILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRG-GKMEPVEPR-GFAVDVVLAARGYPDAPEK---GKEITLPEEG-L 355 (412)
T ss_dssp EEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHT-SCCCCCCCC-SEEEEEEEECTTTTTSCCC---CCBCBCCSSC-C
T ss_pred EEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcC-CCccccccC-CeEEEEEEecCCCCCCCCC---CCEeeeCCCC-c
Confidence 999999999988775443 3577877777766665 455443222 2556677765321111111 2110022366 5
Q ss_pred EEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 222 VHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 222 ~~~~~~~-----~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+++++.. ...+++++|+|++.|+|.+||+++++++++++..
T Consensus 356 v~~~g~~~~~~~~~~~~~~vg~v~~~g~~~~ea~~~~~~~~~~i~~ 401 (412)
T 1vkz_A 356 IFFAGVAEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHF 401 (412)
T ss_dssp EEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBC
T ss_pred EEECcccccCCeEEeCCCcEEEEEEeCCCHHHHHHHHHHHhcceee
Confidence 6655542 2445899999999999999999999999998764
No 36
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.97 E-value=4.5e-28 Score=255.53 Aligned_cols=283 Identities=14% Similarity=0.159 Sum_probs=205.6
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCCe
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G~ 80 (438)
+++.+++.++++++|||+||||..++ ||+|+++++|++|+.++++.+.. ....++|||||+|++|+++++++|.+|+
T Consensus 220 ~~~~~e~~~~~~~~g~PvVvKp~~g~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~ 298 (554)
T 1w96_A 220 CTSPEDGLQKAKRIGFPVMIKASEGG-GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGT 298 (554)
T ss_dssp CSSHHHHHHHHHHHCSSEEEEETTCC-TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 47889999999999999999998876 99999999999999999887641 1345999999997799999999988788
Q ss_pred EEEE-eeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEe-CCCcEEEEEEcCCCCCCCCc
Q 013661 81 ILCY-PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 81 ~~~~-~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~~sg~~ 157 (438)
++.+ +..+..++.........|+. ++++..+++.+++.+++++|||+|++++||+++ ++|.+||+|+|||++++..+
T Consensus 299 vv~l~~~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~ 378 (554)
T 1w96_A 299 NISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPT 378 (554)
T ss_dssp EEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHH
T ss_pred EEEEeeeeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceeh
Confidence 7644 33344554444334456887 899999999999999999999999999999998 67889999999999986433
Q ss_pred eeeeccCcHHHHHHHHHhCCCCCCCC--------------------------------CCCCceEEEEeecCCccCCCcc
Q 013661 158 TIESCYTSQFEQHMRAVVGLPLGDPS--------------------------------MKTPAAIMYNLLGEAEGERGFY 205 (438)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~G~~l~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
+...+|+|+++.+++.++|.+++... ...+.++..++++.. +...|.
T Consensus 379 ~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~-~~~~~~ 457 (554)
T 1w96_A 379 TEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSED-PNDGFK 457 (554)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEEC-CCCSSC
T ss_pred hhhhcCCCHHHHHHHHHcCCCcccccchhhhccCCccccccccccccccccccccccCCCCeEEEEEEEEccC-CCCCcc
Confidence 33578999999999999999875320 112334556777653 222332
Q ss_pred hhhhchhhh--hccCCcEEEEe--ccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEcc
Q 013661 206 LAHQLIGKA--LSIPGATVHWY--DKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS 279 (438)
Q Consensus 206 p~~~~~~~~--~~~p~~~~~~~--~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs 279 (438)
|....+..+ ...|++.++.. .+..+.+ ++++|+|++.|+|.+||++++.++++++... +. -
T Consensus 458 p~~G~i~~~~~~~~~~v~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~-------g~------~ 524 (554)
T 1w96_A 458 PSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIR-------GD------F 524 (554)
T ss_dssp CCSSSEEEECCSSCSSEEEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTC-------C--------
T ss_pred cCCeEEeEEecCCCCCEEEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEE-------ee------c
Confidence 211112211 12255544321 1212222 5699999999999999999999999988641 21 3
Q ss_pred CCCHHHHHHHHHHHHHcCCcE
Q 013661 280 DSDLPVMKDAAKILTMFSVPH 300 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~ 300 (438)
.+|.+.+..+...-......+
T Consensus 525 ~~~i~~~~~~~~~~~f~~~~~ 545 (554)
T 1w96_A 525 RTTVEYLIKLLETEDFEDNTI 545 (554)
T ss_dssp --CCHHHHHHHTSHHHHTTCC
T ss_pred cCCHHHHHHHhcCHhhhcCCc
Confidence 578888888876655554443
No 37
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.96 E-value=1.2e-29 Score=284.67 Aligned_cols=285 Identities=17% Similarity=0.232 Sum_probs=216.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+.+.+++.++++++|||+||||+.++ ||+||++|+|++||.++++.+... .+.++||+||+|.+|+++++++
T Consensus 140 ~v~s~eea~~~a~~iGyPvVVKP~~Gg-Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~ 218 (1150)
T 3hbl_A 140 PIKSYELAKEFAEEAGFPLMIKATSGG-GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIG 218 (1150)
T ss_dssp CBCSSSTTTTTGGGTCSSEEEECCC--------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEE
Confidence 356778888999999999999998877 999999999999999999875421 3569999999988999999999
Q ss_pred cCCCeEEE-EeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 76 GRDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 d~~G~~~~-~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|.+|+++. +...+..++.+.......|++ ++++.++++.+.+.++++++||+|++++||+++++ .+||+|||||+++
T Consensus 219 d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR~~g 297 (1150)
T 3hbl_A 219 DEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPRVQV 297 (1150)
T ss_dssp CSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECSCCT
T ss_pred eCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCCCCC
Confidence 98888764 444567777777777788885 99999999999999999999999999999999976 7999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCC------CC---CCCceEEEEeecCCccCCCcchhhhchhhhhccC---CcE
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDP------SM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GAT 221 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~------~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p---~~~ 221 (438)
+.+++...+|+|+++++++.++|.+++.. +. ..++++.++++++ ++...|.|....+. .+..| ++.
T Consensus 298 ~~~vte~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~ae-dp~~~f~P~~G~i~-~~~~p~~~gvr 375 (1150)
T 3hbl_A 298 EHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTE-DPLNDFMPDTGTII-AYRSSGGFGVR 375 (1150)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSE-EGGGTSEECCCCCC-EEECCCCTTEE
T ss_pred CcceeehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEecc-CCccccCCCCceEE-EEEcCCCCcee
Confidence 66666677899999999999999999852 11 1355778888876 34445655222222 23333 333
Q ss_pred EEE---eccccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc
Q 013661 222 VHW---YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 222 ~~~---~~~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~ 296 (438)
+.- +.+..+.+ ++.+|+|++.|.|++||++++.++++++. |.|-.++.+++..+...-...
T Consensus 376 ~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~--------------i~G~~tn~~~~~~~~~~~~f~ 441 (1150)
T 3hbl_A 376 LDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR--------------IRGVKTNIPFLINVMKNKKFT 441 (1150)
T ss_dssp EEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCE--------------EESSCCSHHHHHHHHHCHHHH
T ss_pred ccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceE--------------EeCccCCHHHHHHHhCCHHHc
Confidence 321 22333333 56699999999999999999999999863 477889999999998776665
Q ss_pred CCcEEEEE
Q 013661 297 SVPHEVRI 304 (438)
Q Consensus 297 G~~~~~~v 304 (438)
...+++++
T Consensus 442 ~~~~~t~~ 449 (1150)
T 3hbl_A 442 SGDYTTKF 449 (1150)
T ss_dssp HSCCCTTH
T ss_pred CCCcccch
Confidence 55555443
No 38
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.96 E-value=1.3e-28 Score=251.41 Aligned_cols=251 Identities=16% Similarity=0.099 Sum_probs=183.3
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----------CCCCcEEEeeccCCCeEEEE
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----------GFDRGLYVEKWAPFVKELAV 71 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----------~~~~~~lvEe~I~g~~e~sv 71 (438)
+++.+|+.+ .++|||+||||..++ ||+||++|+|++||.++++.+. .....+++|+||+| .|+++
T Consensus 133 ~~~~~~~~~--~~~g~P~vvKp~~g~-gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv 208 (425)
T 3vot_A 133 FHTLADLEN--RKLSYPLVVKPVNGF-SSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAI 208 (425)
T ss_dssp ESSGGGGTT--CCCCSSEEEEESCC------CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEE
T ss_pred cCcHHHHHH--hhcCCcEEEEECCCC-CCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEE
Confidence 455666543 578999999998766 9999999999999999987652 12356999999997 89999
Q ss_pred EEEEcCCCeEEEEeeeeeEEecC---eEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcc-eEEEEEEEEeCCCcEEEEEE
Q 013661 72 IVVRGRDKSILCYPVVETIHKEN---ICHIVKAPAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEV 147 (438)
Q Consensus 72 ~~~~d~~G~~~~~~~~e~~~~~g---~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~~g~~~viEi 147 (438)
+++.+ +|++..++..+.....+ .....+.|+.++++..+++.+++.+++++||+. |++|+||+++++|++||+|+
T Consensus 209 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEi 287 (425)
T 3vot_A 209 ETLSI-QGNVHVLSIGYKGNSKGPFFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEV 287 (425)
T ss_dssp EEEEE-TTEEEEEEEEEEECCCCSBCCCCEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEE
T ss_pred EEEEe-CCcEEEEeEEEEeccCCCccccceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEE
Confidence 99875 67887777665443322 223456799999999999999999999999996 99999999999999999999
Q ss_pred cCCCCCCCC---ceeeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeecC-CccC-CCcchhhhchhhhhccCC
Q 013661 148 APRPHNSGH---HTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGE-AEGE-RGFYLAHQLIGKALSIPG 219 (438)
Q Consensus 148 NpR~~~sg~---~~~~~~~~~~~~~~~~~~~G~~l~~~~~---~~~~~~~~~~~~~-~~~~-~~~~p~~~~~~~~~~~p~ 219 (438)
|||+|+++. .+..++|+|+++++++.++|.+...... .....+...++.. ..+. ..+. +++++...|+
T Consensus 288 N~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~----g~~~~~~~p~ 363 (425)
T 3vot_A 288 GARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSEFEGEIRPVRTAGNYIIPVQGSGTFEKID----GLEEVKQRQE 363 (425)
T ss_dssp ESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGGSCSCCCCSSEEEEEECCCCSCEEEEEEE----THHHHHTCTT
T ss_pred ecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccccccccccceEEEEEEEcCCCCeEEEecC----CHHHHhcCCC
Confidence 999987542 2344678999999999999965543211 1122333333332 2221 1233 6667778898
Q ss_pred c-EEEEeccc--ccc----CCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 220 A-TVHWYDKP--EMR----QQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 220 ~-~~~~~~~~--~~~----~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+ ++.++.++ .+. .++++|+|++.|+|.+||.++++++.+.+..
T Consensus 364 v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~i 413 (425)
T 3vot_A 364 VKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDELHI 413 (425)
T ss_dssp EEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHHCEE
T ss_pred eEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCccEE
Confidence 7 56665432 222 2678999999999999999999999998753
No 39
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.96 E-value=4.9e-29 Score=280.43 Aligned_cols=287 Identities=17% Similarity=0.205 Sum_probs=174.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~d 76 (438)
++|.+++.++++++|||+||||..++ ||+||++|+|++|+.++++.+.. ....++|||||++++|+++++++|
T Consensus 157 v~s~eea~~~a~~igyPvVVKp~~g~-GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D 235 (1165)
T 2qf7_A 157 PDDMAEVAKMAAAIGYPVMLKASWGG-GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGD 235 (1165)
T ss_dssp ----------------------------------------------------------------CCCSSEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEc
Confidence 56788999999999999999998876 89999999999999998876532 124599999999779999999999
Q ss_pred CCCeEEE-EeeeeeEEecCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEe-CCCcEEEEEEcCCCCC
Q 013661 77 RDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~~ 153 (438)
.+|+++. ++..+..++.+.......|++ ++++.++++.+++.++++++||+|++++||+++ ++|++||+|+|||+++
T Consensus 236 ~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~~ 315 (1165)
T 2qf7_A 236 THGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQV 315 (1165)
T ss_dssp TTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred CCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCCC
Confidence 8887764 455566777676677778884 999999999999999999999999999999999 7788999999999998
Q ss_pred CCCceeeeccCcHHHHHHHHHhCCCCCCCC---------CCCCceEEEEeecCCccCCCcchhhhchhhhhccCC-cEEE
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS---------MKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVH 223 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~-~~~~ 223 (438)
+.+++...+|+|+++.+++.++|.+++... ...++++.++++++. |...|.|....+.. ...|+ ..++
T Consensus 316 ~~~vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~-P~~~f~p~~G~I~~-~~~~~~~gvr 393 (1165)
T 2qf7_A 316 EHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTED-PEHNFIPDYGRITA-YRSASGFGIR 393 (1165)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEE-TTTTTEECCEECCE-EECCCCTTEE
T ss_pred CchhhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecC-CccCcCCCCcEEEE-EecCCCCceE
Confidence 766666678999999999999999887531 123445667777653 44445543222222 22222 1233
Q ss_pred Eec-----cccccC--CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc
Q 013661 224 WYD-----KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 224 ~~~-----~~~~~~--~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~ 296 (438)
++. +..+.+ ++++|+|++.|+|+++|++++.++++++. +.|-.+|.+++..+...-...
T Consensus 394 vd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~~i~--------------i~G~~tni~~~~~~~~~~~f~ 459 (1165)
T 2qf7_A 394 LDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFR--------------IRGVATNLTFLEAIIGHPKFR 459 (1165)
T ss_dssp EECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHHCE--------------EESSCCSHHHHHHHHTSHHHH
T ss_pred eeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEE--------------EecccCCHHHHHHHhcCHHhh
Confidence 332 223333 67899999999999999999999999874 345678999999998877777
Q ss_pred CCcEEEEEec
Q 013661 297 SVPHEVRIVS 306 (438)
Q Consensus 297 G~~~~~~v~s 306 (438)
...++++++.
T Consensus 460 ~~~~~t~~~~ 469 (1165)
T 2qf7_A 460 DNSYTTRFID 469 (1165)
T ss_dssp TTCCCTTTTT
T ss_pred cCCccchhhh
Confidence 7677766544
No 40
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.96 E-value=3.5e-27 Score=239.04 Aligned_cols=250 Identities=14% Similarity=0.116 Sum_probs=179.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+++.++++++|||+||||..++ ||+|+++++|.+|+.++++.+.. ..+.+++||||+| .|++++++.. +|
T Consensus 129 ~~~~~~~~~~~~~~~g~P~vvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~~~~~-~g 205 (403)
T 4dim_A 129 VVRNENELKNALENLKLPVIVKATDLQ-GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQAFVY-KN 205 (403)
T ss_dssp CCCSHHHHHHHHHTSCSSEEEECSCC------CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEEEEEE-TT
T ss_pred EeCCHHHHHHHHhcCCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEEEEEE-CC
Confidence 367899999999999999999998876 99999999999999999887632 2345999999997 9999999874 68
Q ss_pred eEEEEeeeeeEEec---CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcce-EEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 80 SILCYPVVETIHKE---NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAG-IFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~---g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G-~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
++..+...++.... +.......|+.++++..+++.+++.+++++||++| ++|+||+++ +|.+||+|+|||+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~-~~~~~~iEiN~R~~~~~ 284 (403)
T 4dim_A 206 DVLFVMPHGDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK-DNEVYIIELTGRVGANC 284 (403)
T ss_dssp EEEEEEEEEEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE-TTEEEEEEEESSCCSTT
T ss_pred EEEEEEEecceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE-CCcEEEEEEcCCCCCCc
Confidence 88776655444322 22345567888999999999999999999999996 999999998 67899999999999855
Q ss_pred C--ceeeeccCcHHHHHHHHHhCCCCC-CCCC--CCCceEEEEe-e-cCCccC-CCcchhhhchhhhhccCCc-EEEEec
Q 013661 156 H--HTIESCYTSQFEQHMRAVVGLPLG-DPSM--KTPAAIMYNL-L-GEAEGE-RGFYLAHQLIGKALSIPGA-TVHWYD 226 (438)
Q Consensus 156 ~--~~~~~~~~~~~~~~~~~~~G~~l~-~~~~--~~~~~~~~~~-~-~~~~~~-~~~~p~~~~~~~~~~~p~~-~~~~~~ 226 (438)
. .+...+|+|+++++++.++|.+++ .... ....+...++ + +...+. ..+. ... ...+++ ++.++.
T Consensus 285 ~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~----~~~--~~~~~v~~~~~~~ 358 (403)
T 4dim_A 285 LPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILKEIL----NSN--AKDDDIVEITFFK 358 (403)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTCCTHHHHTTCCSSCCEEEEEEECCSSCCEEEEEEE----ECC--CCCTTEEEEEECC
T ss_pred HHHHHHHHhCcCHHHHHHHHHcCCCccccccccccccccceEEEEEecCCCeEEEeee----ccc--ccCCCeEEEEEEc
Confidence 3 345578999999999999999983 2211 1122333343 2 222221 1111 111 112333 233322
Q ss_pred cc--cccC----CceeEEEEEEcCCHHHHHHHHHHHhhcCC
Q 013661 227 KP--EMRQ----QRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 227 ~~--~~~~----~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~ 261 (438)
.+ .+.+ .+++|+|++.|+|.++|+++++++++++.
T Consensus 359 ~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~~~~ 399 (403)
T 4dim_A 359 EENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINNIN 399 (403)
T ss_dssp CTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhccEE
Confidence 21 2222 45899999999999999999999998764
No 41
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.95 E-value=1.7e-26 Score=235.73 Aligned_cols=255 Identities=15% Similarity=0.139 Sum_probs=181.8
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ +|+|+++++|.+|+.++++.+... ...++|||||+| +|+++.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~ 199 (424)
T 2yw2_A 122 VFTDFEKAKEYVEKVGAPIVVKADGLA-AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEASYIVMI 199 (424)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSCC-TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCcEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEEEEEEE
Confidence 357889999999999999999998775 899999999999999999876431 245999999996 999999998
Q ss_pred cCCCeEEEEeeeeeEEe--cC------eEEEEEeCCC-CCHHHHHHH-HHHHHHHHHhc-----CcceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~--~g------~~~~~~~p~~-l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g 140 (438)
|++ .++.+....+... .+ ..+..+.|++ +++++.+++ .+++.+++++| +|.|++++||+++++|
T Consensus 200 ~G~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g 278 (424)
T 2yw2_A 200 NGD-RYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG 278 (424)
T ss_dssp ETT-EEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE
T ss_pred cCC-EEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 533 3333333221111 11 1133567887 999999988 47888888775 7889999999999888
Q ss_pred cEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchh--hhchhhhhcc
Q 013661 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLA--HQLIGKALSI 217 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~ 217 (438)
+||+|+|||+++++++... .++.|+.+.+++.+.|. +++.......++..++.....+. ...+. ..+++.....
T Consensus 279 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~a~~~~~~~~g~~~-~~~~g~~i~~~~~~~~~ 355 (424)
T 2yw2_A 279 -PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHIKEDERYALDVVLASRGYPE-KPETGKIIHGLDYLKSM 355 (424)
T ss_dssp -EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCCCBCSSEEEEEEEECTTTTS-SCCCCCBCBCHHHHHTS
T ss_pred -cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccccCCcEEEEEEecCCCCC-CCCCCCcCcCcccccCC
Confidence 9999999999987765433 56899999998887775 55543322334334443321111 01000 0134344446
Q ss_pred CCcEEEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 218 PGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 218 p~~~~~~~~~~-----~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
|+++++.++.. ....++++|+|++.|+|.++|+++++++++++..
T Consensus 356 ~~~~~~~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~ 405 (424)
T 2yw2_A 356 EDVVVFHAGTKKEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCF 405 (424)
T ss_dssp TTEEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred CCeEEEEcceEeeCCEEEecCCcEEEEEEEeCCHHHHHHHHHHHHhccee
Confidence 88776554431 2334789999999999999999999999998764
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.5e-26 Score=235.58 Aligned_cols=255 Identities=15% Similarity=0.107 Sum_probs=180.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+++.++++++|||+||||..++ +|+|+++++|.+|+.++++.+.. .+..++|||||+| .|+++.+++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~~~G~- 197 (417)
T 2ip4_A 121 VFREPLEALAYLEEVGVPVVVKDSGLA-AGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLALTDGE- 197 (417)
T ss_dssp EESSHHHHHHHHHHHCSSEEEECTTSC-SSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEEESSS-
T ss_pred eeCCHHHHHHHHHHcCCCEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEEEeCC-
Confidence 357889999999999999999998776 89999999999999999987742 2256999999996 899999998432
Q ss_pred eEEEEeeeeeEEe--cCe------EEEEEeCCCCCHHHHHHH-HHHHHHHHHhc-----CcceEEEEEEEEeCCCcEEEE
Q 013661 80 SILCYPVVETIHK--ENI------CHIVKAPAAVPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNGQILLN 145 (438)
Q Consensus 80 ~~~~~~~~e~~~~--~g~------~~~~~~p~~l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~~vi 145 (438)
.++.++..+.... .++ ....+.|+++++++.+++ ++++.+++++| +|+|++++||+++++| +||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~vi 276 (417)
T 2ip4_A 198 TILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKVL 276 (417)
T ss_dssp CEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEEE
T ss_pred EEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEEE
Confidence 2444444332211 111 123567888999999888 77788888775 7889999999999888 9999
Q ss_pred EEcCCCCCCCCcee-eeccCcHHHHHHHHHhCCCCCCCCCC-CCceEEEEeecCCccCCCcchhhhchhhhhccCCcEEE
Q 013661 146 EVAPRPHNSGHHTI-ESCYTSQFEQHMRAVVGLPLGDPSMK-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVH 223 (438)
Q Consensus 146 EiNpR~~~sg~~~~-~~~~~~~~~~~~~~~~G~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 223 (438)
|+|||+++++++.. ..+++|+.+.+++.+.|. ++..... ....++..+++...+.....+. ..+..+...|++.++
T Consensus 277 EiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~~i~~~~~~~~v~~~ 354 (417)
T 2ip4_A 277 EFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAGTRLSWKEGAAACVVLAAPGYPESPRKG-IPLHVPEPPEGVLVF 354 (417)
T ss_dssp EEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGGCCCCBCSSEEEEEEEECTTTTTSCCCC-CBCBCCCCCTTEEEE
T ss_pred EEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcCCccccCCcEEEEEEeCCCCCCCCCCC-CcccccCCCCCeEEE
Confidence 99999998765443 356899999999988885 4433222 1124444445433221111100 001111112677666
Q ss_pred Eeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 224 WYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 224 ~~~~~-----~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+++.. ....+.|+|+|++.|+|.++|+++++++++++..
T Consensus 355 ~~g~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~ 398 (417)
T 2ip4_A 355 HAGTRREGGRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGF 398 (417)
T ss_dssp ESSEEESSSSEEECSSEEEEEEEEESSHHHHHHHHHHHGGGSBC
T ss_pred ECceEeeCCeEEecCCcEEEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 65541 1223567999999999999999999999998864
No 43
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.95 E-value=3.5e-26 Score=235.39 Aligned_cols=253 Identities=17% Similarity=0.134 Sum_probs=179.8
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~ 74 (438)
.+++.+++.++++++||| +||||..++ +|+|+++++|.+|+.++++.+... ...++|||||+| +|+++.++
T Consensus 148 ~~~~~~~~~~~~~~~g~P~vvvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~ 225 (452)
T 2qk4_A 148 AFTKPEEACSFILSADFPALVVKASGLA-AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG-EEVSCLCF 225 (452)
T ss_dssp EESSHHHHHHHHHHCSSCEEEEEESBC----CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-EEEEEEEE
T ss_pred EECCHHHHHHHHHhCCCCeEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CeEEEEEE
Confidence 357889999999999999 999998776 899999999999999999876431 246999999995 99999999
Q ss_pred EcCCCe-EEEEeeeeeEEe--cC------eEEEEEeCCC-CCHHHHHHHH-HHHHHHHHhc-----CcceEEEEEEEEeC
Q 013661 75 RGRDKS-ILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTN 138 (438)
Q Consensus 75 ~d~~G~-~~~~~~~e~~~~--~g------~~~~~~~p~~-l~~~~~~~i~-~~a~~i~~~l-----g~~G~~~ve~~~~~ 138 (438)
+| |+ +..++..++... .+ .....+.|++ +++++.+++. +++.+++++| +|+|++++||++++
T Consensus 226 ~d--G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~ 303 (452)
T 2qk4_A 226 TD--GKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK 303 (452)
T ss_dssp EC--SSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET
T ss_pred EC--CCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC
Confidence 84 54 555655433222 11 1133567887 9999998886 6888887765 67899999999998
Q ss_pred CCcEEEEEEcCCCCCCCCce-eeeccCcHHHHHHHHHhCCCCCCCCCC--CCc-eEEEEeecCCccCCCcchh--hhchh
Q 013661 139 NGQILLNEVAPRPHNSGHHT-IESCYTSQFEQHMRAVVGLPLGDPSMK--TPA-AIMYNLLGEAEGERGFYLA--HQLIG 212 (438)
Q Consensus 139 ~g~~~viEiNpR~~~sg~~~-~~~~~~~~~~~~~~~~~G~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~p~--~~~~~ 212 (438)
+| +||+|+|||++++++++ ...++.|+.+.+++.+.|. ++..... ... ++...+.....+. ...+. ..+++
T Consensus 304 ~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~a~~~~l~~~g~~~-~~~~g~~i~~l~ 380 (452)
T 2qk4_A 304 NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCTSLPVWLENHTALTVVMASKGYPG-DYTKGVEITGFP 380 (452)
T ss_dssp TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGGGCCCBCTTCEEEEEEEECTTTTS-SCCCSCBCBCHH
T ss_pred CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccceecCCCcEEEEEEECCCCCC-CCCCCCcccCcc
Confidence 88 99999999999877653 3346799999888877664 5543222 123 3333433321111 11100 01333
Q ss_pred hhhccCCcEEEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 213 KALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 213 ~~~~~p~~~~~~~~~~-----~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
.. ..|++++++++.. ....++++|+|++.|+|.++|+++++++++++..
T Consensus 381 ~~-~~~~v~~~~~G~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~ 434 (452)
T 2qk4_A 381 EA-QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKF 434 (452)
T ss_dssp HH-HHTTCEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBC
T ss_pred cc-CCCCcEEEECcEEeeCCeEEecCCeEEEEEEecCCHHHHHHHHHHHHhhccc
Confidence 32 4578877766532 2344789999999999999999999999998764
No 44
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.95 E-value=4.8e-26 Score=233.62 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=184.7
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ +|+|+++++|.+|+.++++.+... ...++|||||+| +|+++.+++
T Consensus 143 ~~~~~~ea~~~~~~~g~PvVvKp~~~~-gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~ 220 (442)
T 3lp8_A 143 YFVDTNSAYKFIDKHKLPLVVKADGLA-QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEISFFTLV 220 (442)
T ss_dssp EESSHHHHHHHHHHSCSSEEEEESSCC-TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCcEEEeECCCC-CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEEEEEEEE
Confidence 367899999999999999999998765 999999999999999999876421 246999999996 999999998
Q ss_pred cCCCeEEEEeeeeeEEec--Ce------EEEEEeCCC-CCHHHHHHHHHH----HHHHHHhcCc--ceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELATDV----AHKAVSSLEG--AGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~~--g~------~~~~~~p~~-l~~~~~~~i~~~----a~~i~~~lg~--~G~~~ve~~~~~~g 140 (438)
|++ +++.++..+...+. ++ .+..+.|++ +++++.+++.+. +.++++++|+ +|++++||+++++|
T Consensus 221 dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g 299 (442)
T 3lp8_A 221 DGS-NPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE 299 (442)
T ss_dssp ESS-CEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred CCC-eEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 754 45555544322211 11 134567887 999999999987 8888888887 79999999999877
Q ss_pred cEEEEEEcCCCCCCCCceee-eccCcHHHHHHHHHhCCCCC-CCCCCCCceEEEEeecCCccCCCcch--hhhchhhhhc
Q 013661 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLG-DPSMKTPAAIMYNLLGEAEGERGFYL--AHQLIGKALS 216 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~~-~~~~~~~~~~~~~~~G~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~ 216 (438)
+||+|+|||+|++.+..+. .++.|+++.+++.+.|.... ....... ++...+++.......+.. ...++++...
T Consensus 300 -~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l~~~~~~~~~~-~a~~vv~a~~gyp~~~~~g~~i~g~~~~~~ 377 (442)
T 3lp8_A 300 -PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNESVELSKK-AALCVVVASRGYPGEYKKNSIINGIENIEK 377 (442)
T ss_dssp -EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCCSSCCCCBCSC-EEEEEEEEETTTTSSCCSSCEEBSHHHHHT
T ss_pred -eEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCCCCCCceeccC-cEEEEEEccCCCCCCCCCCCEeeCCccccc
Confidence 9999999999977665533 45789999999999996322 1222222 333333433322111110 0114545455
Q ss_pred cCCcEEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 217 IPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 217 ~p~~~~~~~~~-----~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
.|++.+...+. .....+.|++.|++.|+|.+||.++++++++.|.+
T Consensus 378 ~~~~~~~~ag~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~ 428 (442)
T 3lp8_A 378 LPNVQLLHAGTRREGNNWVSDSGRVINVVAQGENLASAKHQAYAALDLLDW 428 (442)
T ss_dssp CSSEEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred CCCcEEEEeeeeccCCeEEecCCeEEEEEEecCCHHHHHHHHHHHhcccCC
Confidence 57765433221 12234799999999999999999999999998864
No 45
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.95 E-value=1.9e-27 Score=267.62 Aligned_cols=243 Identities=17% Similarity=0.196 Sum_probs=190.9
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
.+++.+++.++++++|||+||||.+++ ||+|+.+++|++|+.++++.+. ...+.++|||||+|.+|+++++++|.+|
T Consensus 148 ~v~~~~ea~~~~~~ig~PvVvKp~~~~-Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g 226 (1073)
T 1a9x_A 148 IAHTMEEALAVAADVGFPCIIRPSFTM-GGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKND 226 (1073)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence 357889999999999999999998866 8999999999999999987653 2234699999999878999999999889
Q ss_pred eEEEEeeeeeEEe----cCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcc-eEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013661 80 SILCYPVVETIHK----ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGA-GIFAVELFWTN-NGQILLNEVAPRPH 152 (438)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~-~g~~~viEiNpR~~ 152 (438)
+++.++..++... .|+ .....|+. ++++..+++++.+.++++++|++ |.+++||++++ +|++||+|+|||++
T Consensus 227 ~~v~~~~~e~~dp~~v~~g~-s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 227 NCIIVCSIENFDAMGIHTGD-SITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp CEEEEEEEEESSCTTSCGGG-SCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred CEEEEEEEecccCCccccCc-EEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecCCCC
Confidence 8877766554321 233 34457885 99999999999999999999999 99999999997 68899999999999
Q ss_pred CCCCceeeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcchhhhchhh-hhccCCcEEEEecccccc
Q 013661 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMR 231 (438)
Q Consensus 153 ~sg~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~p~~~~~~~~~~~~~ 231 (438)
++..++..++|+|+.+.+++.++|.+++....... ....+ ..|.| ..+. +.+.|+|.+++|++...+
T Consensus 306 ~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~~i~--------~~~~~-a~f~p---~~~~v~~~ip~~~~~~~~~~~~~ 373 (1073)
T 1a9x_A 306 RSSALASKATGFPIAKVAAKLAVGYTLDELMNDIT--------GGRTP-ASFEP---SIDYVVTKIPRFNFEKFAGANDR 373 (1073)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBCTTT--------TTCSB-SCSCC---BCSSEEEEEEECCGGGCTTSCCB
T ss_pred ccHHHHHHHhCCCHHHHHHHHHcCCChHHhhcccc--------CccCH-HHccc---CCCcEEEEcccccccccCCCCcc
Confidence 87666677899999999999999999887543211 11011 12333 2221 245666666655543322
Q ss_pred C---CceeEEEEEEcCCHHHHHHHHHHHhh
Q 013661 232 Q---QRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 232 ~---~~~~G~Vi~~G~~~~eA~~ka~~a~~ 258 (438)
. ++++|+||+.|+|++||++|+.++++
T Consensus 374 ~~~~~~~~G~v~~~g~~~~ea~~ka~~~l~ 403 (1073)
T 1a9x_A 374 LTTQMKSVGEVMAIGRTQQESLQKALRGLE 403 (1073)
T ss_dssp CCSSCCCCEEEEEEESSHHHHHHHHHHHSS
T ss_pred cCCCccCcEEEEEEcCCHHHHHHHHHHhhc
Confidence 2 56679999999999999999999986
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.95 E-value=5.7e-26 Score=233.76 Aligned_cols=249 Identities=16% Similarity=0.173 Sum_probs=178.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.+++++++||+||||..++ +|+|+++++|.+|+.++++.+.. ....++|||||+| .|+++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~PvVvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 220 (451)
T 2yrx_A 143 AFTSYEEAKAYIEQKGAPIVIKADGLA-AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EEFSFMAFV 220 (451)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEECC-----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCcEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cEEEEEEEE
Confidence 367899999999999999999998876 89999999999999999876531 1245999999996 999999998
Q ss_pred cCCCeEEEEeeeeeEEe--cC------eEEEEEeCCC-CCHHHHHHH-HHHHHHHHHhc-----CcceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~--~g------~~~~~~~p~~-l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g 140 (438)
|++ .+..+...++... .+ .....+.|++ +++++.+++ .+++.+++++| +|.|++++||+++++|
T Consensus 221 dG~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g 299 (451)
T 2yrx_A 221 NGE-KVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG 299 (451)
T ss_dssp ETT-EEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred cCC-EEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 533 2333333221111 11 0123567887 899998888 77777777765 6789999999999888
Q ss_pred cEEEEEEcCCCCCCCCcee-eeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCc-c---CC--Ccchhhhchhh
Q 013661 141 QILLNEVAPRPHNSGHHTI-ESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAE-G---ER--GFYLAHQLIGK 213 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~-~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~-~---~~--~~~p~~~~~~~ 213 (438)
+||+|+|||++++++++. ..++.|+.+.+++.+.|.. +....... .++..++.... + .. .+. ++++
T Consensus 300 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~-~~~~~~~~-~~~~~~l~~~g~p~~~~~g~~i~----~~~~ 372 (451)
T 2yrx_A 300 -PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKE-LELEWTDE-AVLGVVLAAKGYPGAYERGAEIR----GLDR 372 (451)
T ss_dssp -EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCC-CCCCBCSS-EEEEEEEEETTTTSSCCCCCEEB----CGGG
T ss_pred -cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCC-CCccccCC-ceEEEEEecCCcCCCCCCCCcCc----Cccc
Confidence 999999999998776543 3567999998888877754 33322222 34445554321 1 11 122 4444
Q ss_pred hhccCCcEEEEeccc-----cccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 214 ALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 214 ~~~~p~~~~~~~~~~-----~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+ . |++++++++.. ...+++++|+|++.|+|.+||+++++++++++..
T Consensus 373 ~-~-~~~~v~~~G~~~~~~~~~~~~~rvg~v~~~g~~~~ea~~~~~~~~~~i~~ 424 (451)
T 2yrx_A 373 I-S-PDALLFHAGTKREGGAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDC 424 (451)
T ss_dssp S-C-TTSEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred c-C-CCCEEEeCcccccCCeEEcCCCeEEEEEEEeCCHHHHHHHHHHHhhcccc
Confidence 4 4 88887776643 2445799999999999999999999999998764
No 47
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.94 E-value=1.5e-25 Score=229.32 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=180.0
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..++ +|+|+++++|.+|+.++++.+.. ....++|||||+| +|+++.+++
T Consensus 127 ~~~~~~ea~~~~~~~g~PvVvKp~~~~-gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~ 204 (431)
T 3mjf_A 127 NFTDVEAALAYVRQKGAPIVIKADGLA-AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMV 204 (431)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSSC-TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEE
T ss_pred eeCCHHHHHHHHHHcCCeEEEEECCCC-CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEE
Confidence 367899999999999999999997665 89999999999999999987642 2246999999996 999999998
Q ss_pred cCCCeEEEEeeeeeEEe--cCe------EEEEEeCCC-CCHHHHHHHHHH----HHHHHHhcCc--ceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATDV----AHKAVSSLEG--AGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~--~g~------~~~~~~p~~-l~~~~~~~i~~~----a~~i~~~lg~--~G~~~ve~~~~~~g 140 (438)
|++ +++.++..+...+ .++ .+.++.|++ ++++..+++.+. +.+.++++|+ +|++++||+++++|
T Consensus 205 dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g 283 (431)
T 3mjf_A 205 DGE-NVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADG 283 (431)
T ss_dssp ESS-CEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTS
T ss_pred cCC-EEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCC
Confidence 754 5665554432211 111 134567888 999999999876 6677776654 89999999999888
Q ss_pred cEEEEEEcCCCCCCCCce-eeeccCcHHHHHHHHHhCCCCC-CCCCCCCceEEEEeecCCccCCCcchh--hhchhhhhc
Q 013661 141 QILLNEVAPRPHNSGHHT-IESCYTSQFEQHMRAVVGLPLG-DPSMKTPAAIMYNLLGEAEGERGFYLA--HQLIGKALS 216 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~-~~~~~~~~~~~~~~~~~G~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~ 216 (438)
++||+|+|||+|.+.... ...+++|+++.+++.+.|.... ........++ ..+++..+....+.+. ..++++...
T Consensus 284 ~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G~l~~~~~~~~~~~a~-~vv~a~~gyp~~~~~g~~i~~~~~~~~ 362 (431)
T 3mjf_A 284 QPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERPSL-GVVLAAGGYPADYRQGDVIHGLPQQEV 362 (431)
T ss_dssp CEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTTCGGGCCCCBCSSCEE-EEEEEETTTTSCCCCCCBCBCCCSSCB
T ss_pred CeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcCCCCCCCccccCCcEE-EEEecCCCcCccCCCCCEeeCCccccC
Confidence 899999999998544332 2456899999999999996322 1222223333 3334332221111110 012322222
Q ss_pred cCCcEEEEecc------ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 217 IPGATVHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 217 ~p~~~~~~~~~------~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
+++.+...+. .....+.|++.|++.|+|.+||.++++++++.|++
T Consensus 363 -~~~~~~~ag~~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~ 413 (431)
T 3mjf_A 363 -KDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQW 413 (431)
T ss_dssp -TTEEEEESSEEECTTSCEEECSSEEEEEEEECSSHHHHHHHHHHHHTTCBC
T ss_pred -CCcEEEEeeeEecCCCEEEecCCeEEEEEEecCCHHHHHHHHHHHhccCCC
Confidence 5554332221 11223799999999999999999999999998864
No 48
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.94 E-value=2.6e-25 Score=226.73 Aligned_cols=253 Identities=13% Similarity=0.159 Sum_probs=176.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv~~~~ 75 (438)
.+++.+++.++++++|||+|+||..++ +|+|+++++|.+|+.++++.+... ...++|||||+| +|+++.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~ 199 (422)
T 2xcl_A 122 TFTSFDEAKAYVQEKGAPIVIKADGLA-AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFSLMAFV 199 (422)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSCG-GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEEEEEEE
Confidence 357899999999999999999998765 899999999999999999876421 245999999995 999999998
Q ss_pred cCCCeEEEEeeeeeEEe--cC------eEEEEEeCCC-CCHHHHHHHH-HHHHHHHHhc-----CcceEEEEEEEEeCCC
Q 013661 76 GRDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTNNG 140 (438)
Q Consensus 76 d~~G~~~~~~~~e~~~~--~g------~~~~~~~p~~-l~~~~~~~i~-~~a~~i~~~l-----g~~G~~~ve~~~~~~g 140 (438)
|++ .++.+....+... .+ .....+.|++ +++++.+++. +++.+++++| +|.|++++||+++++|
T Consensus 200 dG~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g 278 (422)
T 2xcl_A 200 KGE-KVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG 278 (422)
T ss_dssp ETT-EEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred cCC-EEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC
Confidence 533 2333333222111 11 1133567887 9999988885 4787777765 7889999999999888
Q ss_pred cEEEEEEcCCCCCCCCcee-eeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeecCCccCCCcch--hhhchhhhhcc
Q 013661 141 QILLNEVAPRPHNSGHHTI-ESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYL--AHQLIGKALSI 217 (438)
Q Consensus 141 ~~~viEiNpR~~~sg~~~~-~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~ 217 (438)
+||+|+|||++++++++. ..++.|+.+.+++.+.|. ++....... +++..++........... ...+++++ .
T Consensus 279 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~i~~~~~~-~- 353 (422)
T 2xcl_A 279 -SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDK-EVDLRWKDT-AAVSVVLASEGYPESYAKGTPIGSLAAE-T- 353 (422)
T ss_dssp -EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-CCCCCBCSC-EEEEEEEEETTTTSCCCSCCBCCCCCCC-S-
T ss_pred -cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCC-cCcccccCC-ceEEEEEECCCCCCCCCCCCcccCcccC-C-
Confidence 999999999998876543 356799998888876664 444332222 333333332211100000 00133332 3
Q ss_pred CCcEEEEecc-----ccccCCceeEEEEEEcCCHHHHHHHHHHHhhcCCC
Q 013661 218 PGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 218 p~~~~~~~~~-----~~~~~~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~ 262 (438)
|++.++.++. .....++|+|+|++.|+|.++|+++++++++.+..
T Consensus 354 ~~~~~~~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~ 403 (422)
T 2xcl_A 354 EQVVVFHAGTKAEGGEFVTNGGRVANVTAFDETFEAARDRVYKAVDEIFK 403 (422)
T ss_dssp SSEEEEESSEEECSSSEEECSSEEEEEEEEESSHHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEeeeEeeCCEEEeCCCceEEEEEEeCCHHHHHHHHHHHHhccee
Confidence 7776655441 11223577999999999999999999999998764
No 49
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.94 E-value=2.8e-26 Score=229.36 Aligned_cols=226 Identities=14% Similarity=0.062 Sum_probs=151.7
Q ss_pred hCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEecCe
Q 013661 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENI 95 (438)
Q Consensus 16 igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~~g~ 95 (438)
+|||+||||+.++ ||+|+++++|.+++..+ ...+++||||+| +|+++++++|..+........++....+.
T Consensus 124 ig~P~vvKp~~g~-g~~gv~~v~~~~~~~~~-------~~~~~~ee~i~g-~e~sv~~~~d~~~~~~~~~~~~~~~~~~~ 194 (363)
T 4ffl_A 124 SKPPYFVKPPCES-SSVGARIIYDDKDLEGL-------EPDTLVEEYVEG-EVVSLEVVGDGSHFAVVKETLVHIDETYD 194 (363)
T ss_dssp SSSCEEEECSSCC-TTTTCEEEC------CC-------CTTCEEEECCCS-EEEEEEEEEESSCEEECCCEEEEECTTSC
T ss_pred cCCCEEEEECCCC-CCcCeEEeccHHHhhhh-------ccchhhhhhccC-cEEEEEEEEECCeEEEEEEEEeccCCccc
Confidence 6899999998876 99999999999887532 244999999996 99999999986654433333333333333
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC-CceeeeccCcHHHHHHHHH
Q 013661 96 CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG-HHTIESCYTSQFEQHMRAV 174 (438)
Q Consensus 96 ~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg-~~~~~~~~~~~~~~~~~~~ 174 (438)
...+.|++..+ ++++++.+++++|+++|++++||+++++ .+||+|+|||+++.. +.+...+|+|+++++++++
T Consensus 195 -~~~~~p~~~~~----~~~~~a~~~~~~l~~~G~~~vef~~~~~-~~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~~ 268 (363)
T 4ffl_A 195 -CHMVTPLPANP----LFRQISHDLAANLPLKGIMDVEAIFGPK-GLRVIEIDARFPSQTPTVVYYSSGINLIELLFRAF 268 (363)
T ss_dssp -EEEEEECCCCH----HHHHHHHHHHHTTTCEEEEEEEEEEETT-EEEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHHT
T ss_pred -ceeecchhHHH----HHHHHHHHHHHhCCccceeeeeeEEeCC-eEEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHHH
Confidence 34456666664 4778999999999999999999999965 599999999987532 2456678999999999999
Q ss_pred hCCCCCCCCCCC-CceEEEEeecCCccCCCcchhhhchhhhhcc-CCcE-EEEeccc---cccCCceeEEEEEEcCCHHH
Q 013661 175 VGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAHQLIGKALSI-PGAT-VHWYDKP---EMRQQRKMGHITIVGSSMGL 248 (438)
Q Consensus 175 ~G~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-p~~~-~~~~~~~---~~~~~~~~G~Vi~~G~~~~e 248 (438)
+|.+++...... ..++...+.....+ .+.| .-+..... +.+. ++..... ....++++|+|++.|+|++|
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vi~~G~~~~e 343 (363)
T 4ffl_A 269 TDGVEEIRAIPENKYCIYEHLMFGENG--VLIP---VGEQVLSMGSDYGKFYEEPGIEIFLCKGEYPVFTMVFWGKDREE 343 (363)
T ss_dssp TTCCCCC----CCCEEEEEEEEECGGG--BEEE---CCHHHHTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEESSHHH
T ss_pred CCCCCCccccCCCceEEEEEEecCCCC--ccCC---CCceEEecCCCeeEEEecCCCCCEecCCCCceEEEEEEECCHHH
Confidence 999987754433 33444444443322 1221 11122211 2221 1111110 11236889999999999999
Q ss_pred HHHHHHHHhhcCC
Q 013661 249 VESRLNSLLKEDS 261 (438)
Q Consensus 249 A~~ka~~a~~~i~ 261 (438)
|++|++++++.+.
T Consensus 344 A~~k~~~al~~i~ 356 (363)
T 4ffl_A 344 TGAKRCKGLSVLK 356 (363)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 50
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.90 E-value=1.8e-22 Score=201.45 Aligned_cols=145 Identities=21% Similarity=0.233 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEe
Q 013661 6 LESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 6 ~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~ 85 (438)
.+++.++++++|||+||||++++ +|+|+.+|+|.+||.++++.+...++.+++|+||+| +|+++.++.+..+ ...+
T Consensus 166 ~~~~~~~~~~lg~PvvVKP~~gg-~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~G-~e~~v~vl~~~~~--~~~~ 241 (357)
T 4fu0_A 166 EAAMKEIEANLTYPLFIKPVRAG-SSFGITKVIEKQELDAAIELAFEHDTEVIVEETING-FEVGCAVLGIDEL--IVGR 241 (357)
T ss_dssp HHHHHHHHHHCCSSEEEEETTCS-SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEESSSE--EECC
T ss_pred HHHHHHHHHhcCCCEEEEECCCC-CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecCC-EEEEEEEEecCCc--eEEE
Confidence 34566778899999999999877 899999999999999999988777778999999996 9999999976443 2333
Q ss_pred eeeeEEe----------cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 86 VVETIHK----------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 86 ~~e~~~~----------~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+.+.... .+.......|+.+++++.+++++++.+++++||++|+++|||+++++|++||+|||||||.+
T Consensus 242 v~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~PG~t 320 (357)
T 4fu0_A 242 VDEIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTIPGFT 320 (357)
T ss_dssp CEEEEECHHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEEEEcccccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 2222211 12234556899999999999999999999999999999999999999999999999999854
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.3e-22 Score=209.64 Aligned_cols=181 Identities=16% Similarity=0.111 Sum_probs=144.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc------------CCCCcEEEeeccCCCe--
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------------GFDRGLYVEKWAPFVK-- 67 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~------------~~~~~~lvEe~I~g~~-- 67 (438)
.+++.+++.++++++|||+||||..++ ||+|+.+++|++||.++++.+. ...+.++|||||+|.+
T Consensus 159 ~v~s~ee~~~~~~~lg~PvVVKP~~g~-gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~ 237 (474)
T 3vmm_A 159 RVTTLEDFRAALEEIGTPLILKPTYLA-SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGD 237 (474)
T ss_dssp EECSHHHHHHHHHHSCSSEEEEESSCC-TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHH
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceee
Confidence 367889999999999999999998876 9999999999999999987642 1235699999999843
Q ss_pred ---------EEEEEEEEcCCCeEEEEeeeeeEEec-CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEE-EEEEEE
Q 013661 68 ---------ELAVIVVRGRDKSILCYPVVETIHKE-NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIF-AVELFW 136 (438)
Q Consensus 68 ---------e~sv~~~~d~~G~~~~~~~~e~~~~~-g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~-~ve~~~ 136 (438)
+++++++.. +|+...+...+..... ........|+.++++..+++.+.+.++++++|++|.+ |+||++
T Consensus 238 ~~q~~~~~~e~sv~~v~~-dg~~~~v~i~~~~~~~~~~~~~~~~Pa~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~ 316 (474)
T 3vmm_A 238 WYQTEGYSDYISIEGIMA-DGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKL 316 (474)
T ss_dssp HCSSSSSCSEEEEEEEEE-TTEEEEEEEEEECCCBTTBCCEEEESCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred eeecccccceeEEEEEEE-CCeEEEEEEEeeccCCCccceEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEE
Confidence 388886553 5665544433222111 1224456788999999999999999999999999877 799999
Q ss_pred eCCCcEEEEEEcCCCCCCC--CceeeeccCcHHHHHHHHHh-CCCCCCCCC
Q 013661 137 TNNGQILLNEVAPRPHNSG--HHTIESCYTSQFEQHMRAVV-GLPLGDPSM 184 (438)
Q Consensus 137 ~~~g~~~viEiNpR~~~sg--~~~~~~~~~~~~~~~~~~~~-G~~l~~~~~ 184 (438)
+++|++||+|+|||++++. ..+...+|+|+++++++.++ |.+++..+.
T Consensus 317 ~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~G~~l~~~~~ 367 (474)
T 3vmm_A 317 MKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDG 367 (474)
T ss_dssp EGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHHGGGSCCCSS
T ss_pred cCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcCCCCCCCCcc
Confidence 9888899999999998533 23455789999999999999 999876553
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.88 E-value=8.4e-22 Score=198.03 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=128.7
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeee
Q 013661 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e 88 (438)
+.++++++|||+||||..++ +|+|+.+|+|.+||.++++.+...+..+|||+||+|.+|+++.++.+.++.+ .+..+
T Consensus 166 ~~~~~~~~g~PvvVKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~--~~~~e 242 (377)
T 1ehi_A 166 WDKIVAELGNIVFVKAANQG-SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLV--SEIGA 242 (377)
T ss_dssp HHHHHHHHCSCEEEEESSCC-TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCSCEEEEEEEESSSCEE--EEEEE
T ss_pred HHHHHHhcCCCEEEEeCCCC-CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCceEEEEEEcCCCcEE--EeeEE
Confidence 66677889999999998877 8999999999999999998876655679999999965899999998654333 32222
Q ss_pred eEE-----e-----------cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013661 89 TIH-----K-----------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 89 ~~~-----~-----------~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
... . .|.......|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||
T Consensus 243 i~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~rpg 322 (377)
T 1ehi_A 243 HTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPG 322 (377)
T ss_dssp EECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCC
T ss_pred EEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCCCCEEEEEEeCCCC
Confidence 221 0 120134467889999999999999999999999999999999999888999999999999
Q ss_pred CCCCc----eeeeccCcH---HHHHHHHHh
Q 013661 153 NSGHH----TIESCYTSQ---FEQHMRAVV 175 (438)
Q Consensus 153 ~sg~~----~~~~~~~~~---~~~~~~~~~ 175 (438)
.+.+- ...++|+++ +..+++.++
T Consensus 323 ~t~~s~~p~~~~a~G~~~~~l~~~li~~al 352 (377)
T 1ehi_A 323 FTNMSLFKRLWDYSDINNAKLVDMLIDYGF 352 (377)
T ss_dssp CSTTCGGGTGGGGGTCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 75431 234677777 444455544
No 53
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.88 E-value=2.1e-21 Score=194.54 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=113.5
Q ss_pred HHHHHHhhCCc-EEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee
Q 013661 9 ARRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 9 ~~~~~~~igyP-vvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~ 87 (438)
+.++.+++||| +||||..++ +|+|+.+|+|++||.++++.+...+..+|||+||+| +|+++.++.+.. ....+..
T Consensus 171 ~~~~~~~lg~P~vvVKP~~gg-ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~--~~~~~~~ 246 (372)
T 3tqt_A 171 YQRLLDRWGTSELFVKAVSLG-SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRG-REIECAVLGNGA--PKASLPG 246 (372)
T ss_dssp HHHHHHHC---CEEEEESSCC-SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCCS-EEEEEEEEESSS--CEECCCE
T ss_pred HHHHHHhcCCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCCC-EEEEEEEEeCCC--ceEeeeE
Confidence 55677899999 999999877 899999999999999999887766677999999996 999999998642 2222322
Q ss_pred eeE-----------EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 88 ETI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 88 e~~-----------~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+.. +..|.......|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-+
T Consensus 247 ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~dg~~~vlEINt~PG~t 324 (372)
T 3tqt_A 247 EIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFT 324 (372)
T ss_dssp EEECC---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEecCCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCCCcEEEEEEECCCCcC
Confidence 221 1122214456789999999999999999999999999999999999988999999999999853
No 54
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.88 E-value=1.1e-21 Score=197.29 Aligned_cols=144 Identities=21% Similarity=0.291 Sum_probs=112.1
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEee
Q 013661 7 ESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV 86 (438)
Q Consensus 7 ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~ 86 (438)
+++.++++++|||+||||..++ +|.|+.+|+|++||.++++.+...+..+|||+||+| +|+++.++.+. ....++.
T Consensus 191 ~~~~~~~~~lg~PvvVKP~~gg-ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~G-~E~~v~vl~d~--~~~~~~~ 266 (383)
T 3k3p_A 191 SKLAEVEEKLIYPVFVKPANMG-SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDA-REIEVGILGNT--DVKTTLP 266 (383)
T ss_dssp HHHHHHHHHCCSSEEEEECC-------CEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEESS--SCEECCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-eEEEEEEEeCC--CeeEEee
Confidence 5778888999999999998877 899999999999999999877555566999999996 99999999763 3333333
Q ss_pred eeeEEec----------CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 87 VETIHKE----------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 87 ~e~~~~~----------g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+..... ........|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-+
T Consensus 267 ~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~t 344 (383)
T 3k3p_A 267 GEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGFT 344 (383)
T ss_dssp EEEC-----------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCC
T ss_pred EEEecCCCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCCC
Confidence 3321111 0113346799999999999999999999999999999999999988999999999999853
No 55
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.88 E-value=9.7e-22 Score=198.06 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=117.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~ 87 (438)
++.++++++|||+||||..++ +|+|+.+|+|++||.++++.+...+..+|||+||+| +|+++.++.+....+......
T Consensus 189 ~~~~~~~~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~gei 266 (386)
T 3e5n_A 189 DVDTLIAQLGLPLFVKPANQG-SSVGVSQVRTADAFAAALALALAYDHKVLVEAAVAG-REIECAVLGNAVPHASVCGEV 266 (386)
T ss_dssp CHHHHHHHHCSSEEEEESBSC-SSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEECSSSCEEEEEEEE
T ss_pred hHHHHHHhcCCCEEEEECCCC-cCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCCC-eEEEEEEEeCCCceEEEeEEE
Confidence 677788899999999998877 899999999999999999988766677999999997 999999998654333211111
Q ss_pred e---------eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 88 E---------TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 88 e---------~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
. ..+..+.....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||.+.
T Consensus 267 ~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~ 343 (386)
T 3e5n_A 267 VVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTR 343 (386)
T ss_dssp CC-----------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred EeCCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCc
Confidence 0 0011111234567999999999999999999999999999999999999888999999999998543
No 56
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.87 E-value=2.3e-21 Score=193.96 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=115.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~ 87 (438)
++.++++++|||+||||..++ +|+|+.+|++.+||.++++.+...+..+|||+||+| +|+++.++.+.++.+ .+..
T Consensus 162 ~~~~~~~~~g~PvvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~~~~~--~~~~ 237 (364)
T 2i87_A 162 ILKLVNDKLNYPVFVKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNA-REIEVAVLGNDYPEA--TWPG 237 (364)
T ss_dssp HHHHHHHHCCSSEEEEESSCS-SCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCCC-EEEEEEEEESSSCEE--CCCE
T ss_pred HHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCccC-eEEEEEEEcCCCcEE--eeeE
Confidence 566777899999999998877 899999999999999999887655567999999996 999999998754322 1211
Q ss_pred eeE-----------EecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 88 ETI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 88 e~~-----------~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+.. +..|. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||.+
T Consensus 238 e~~~~~~~~~~~~k~~~g~-~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t 314 (364)
T 2i87_A 238 EVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGFT 314 (364)
T ss_dssp EECCSCCC------------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEecCCCcCCHHHcccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCEEEEEEeCCCCCC
Confidence 111 11122 2345788899999999999999999999999999999999988999999999999964
No 57
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.87 E-value=3.8e-21 Score=190.75 Aligned_cols=137 Identities=23% Similarity=0.338 Sum_probs=115.2
Q ss_pred HhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEE--
Q 013661 14 KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH-- 91 (438)
Q Consensus 14 ~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~-- 91 (438)
+++|||+||||..++ +|+|+.++++++||.++++.+...+..+|||+||+| +|+++.++.+.++ +...+..+...
T Consensus 162 ~~~~~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~~~-~~~~~~~ei~~~~ 238 (343)
T 1e4e_A 162 ATFTYPVFVKPARSG-SSFGVKKVNSADELDYAIESARQYDSKILIEQAVSG-CEVGCAVLGNSAA-LVVGEVDQIRLQY 238 (343)
T ss_dssp GGSCSCEEEEESSCC-TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCCS-EEEEEEEEEETTC-CEECCCEEEEESS
T ss_pred hccCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcCC-eEEEEEEEeCCCC-eEEeeeEEEeeCC
Confidence 578999999998877 899999999999999999887655567999999996 9999999987654 44444443221
Q ss_pred ---------e----cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 92 ---------K----ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 92 ---------~----~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
. .|. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|||+|||.+
T Consensus 239 ~~~~~~~k~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t 313 (343)
T 1e4e_A 239 GIFRIHQEVEPEKGSEN-AVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFT 313 (343)
T ss_dssp SCCCGGGSSSGGGCCSS-EEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred CccCHhhcccccCCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCCEEEEEeeCCCCCC
Confidence 1 233 3445788899999999999999999999999999999999988999999999999964
No 58
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.87 E-value=2.9e-21 Score=193.72 Aligned_cols=140 Identities=22% Similarity=0.317 Sum_probs=117.1
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeE
Q 013661 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETI 90 (438)
Q Consensus 11 ~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~ 90 (438)
+..+++|||+||||..++ +|+|+++|+|++||.++++.+...+..+|||+||+| +|+++.++.+.++.+..++..+..
T Consensus 182 ~~~~~lg~PvvVKP~~gg-ss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~~~ei~ 259 (373)
T 3lwb_A 182 QECERLGLPVFVKPARGG-SSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISG-RELECGVLEMPDGTLEASTLGEIR 259 (373)
T ss_dssp HHHHHHCSCEEEEESBCS-TTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCEE-EEEEEEEEECTTSCEEECCCEEEE
T ss_pred HHHHhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCCC-eEEEEEEEECCCCceEEeeeeEEE
Confidence 346789999999998877 899999999999999999988766677999999996 999999998866643444443332
Q ss_pred Ee-----------------cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 91 HK-----------------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 91 ~~-----------------~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.. .+. .....|+.+++++.+++++++.+++++||++|++++||+++++|+ ||+|||+|||.
T Consensus 260 ~~~~~~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~ 337 (373)
T 3lwb_A 260 VAGVRGREDSFYDFATKYLDDA-AELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTMPGF 337 (373)
T ss_dssp CCSTTCSEESSSCHHHHHTCTT-CEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCC
T ss_pred ccCCCCccccccchhhcccCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCCCCC
Confidence 21 122 345679999999999999999999999999999999999998888 99999999985
Q ss_pred C
Q 013661 154 S 154 (438)
Q Consensus 154 s 154 (438)
+
T Consensus 338 t 338 (373)
T 3lwb_A 338 T 338 (373)
T ss_dssp S
T ss_pred C
Confidence 3
No 59
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.87 E-value=2.2e-21 Score=190.27 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=112.7
Q ss_pred CCHHHHHHHH----HhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCC
Q 013661 4 NDLESARRAG----KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 4 ~s~ee~~~~~----~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G 79 (438)
++.+++.+++ +++|||+||||..++ +|+|+.+++|.+|+.++++.+......+||||||+.++|+++.++.+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~g~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~G~E~~v~vl~~~~~ 207 (317)
T 4eg0_A 129 MRGDDYAARATDIVAKLGLPLFVKPASEG-SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEGGGEYTACIAGDLDL 207 (317)
T ss_dssp ETTSCHHHHHHHHHHHHCSCEEEEECC------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSSEEEEEEEETTCCC
T ss_pred ECchhHHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCCcEEEEEEECCccc
Confidence 3445565666 789999999998876 89999999999999999988766667799999999339999999976443
Q ss_pred eEEEEeeeeeEE------ecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 80 SILCYPVVETIH------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 80 ~~~~~~~~e~~~------~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.+........++ ..| ......|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||.
T Consensus 208 ~~~~i~~~~~~~~~~~k~~~g-~~~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg~ 286 (317)
T 4eg0_A 208 PLIKIVPAGEFYDYHAKYVAN-DTQYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGM 286 (317)
T ss_dssp CCEEEEC----------------CEEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred ceEEEeeCCceechhhcccCC-CeeEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCC
Confidence 322221111111 111 1334678889999999999999999999999999999999998899999999999985
Q ss_pred C
Q 013661 154 S 154 (438)
Q Consensus 154 s 154 (438)
+
T Consensus 287 t 287 (317)
T 4eg0_A 287 T 287 (317)
T ss_dssp S
T ss_pred C
Confidence 4
No 60
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.86 E-value=3.1e-21 Score=193.00 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=118.1
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~ 87 (438)
++.++++++|||+||||..++ +|.|+.+++|++|+.++++.+...+..+|||+||+| +|+++.++.+..+.+ .+..
T Consensus 170 ~~~~~~~~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~--~~~~ 245 (364)
T 3i12_A 170 SFAEVESRLGLPLFVKPANQG-SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKG-REIECAVLGNDNPQA--STCG 245 (364)
T ss_dssp CHHHHHHHHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEESSSCEE--EEEE
T ss_pred hHHHHHHhcCCCEEEEECCCC-CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcCC-eEEEEEEEeCCCceE--eeeE
Confidence 677888899999999998877 899999999999999999877544566999999997 999999998754322 2222
Q ss_pred eeE-----E------ecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 88 ETI-----H------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 88 e~~-----~------~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
+.. + ..+.....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||+|||.+
T Consensus 246 ei~~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t 323 (364)
T 3i12_A 246 EIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFT 323 (364)
T ss_dssp EEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEecCCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCEEEEEeeCCCCCC
Confidence 211 1 112224557899999999999999999999999999999999999988999999999999854
No 61
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.86 E-value=7.6e-21 Score=188.87 Aligned_cols=139 Identities=25% Similarity=0.356 Sum_probs=115.5
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEE
Q 013661 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH 91 (438)
Q Consensus 12 ~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~ 91 (438)
+.+++|||+||||..++ +|+|+.++++++||.++++.+...+..+|||+||+| +|+++.++.+.+ ....++..+...
T Consensus 160 ~~~~lg~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G-~E~~v~vl~~~~-~~~~~~~~e~~~ 236 (346)
T 3se7_A 160 PTDQLTYPVFVKPARSG-SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVIG-TEIGCAVMGNGP-ELITGEVDQITL 236 (346)
T ss_dssp CTTTCCSSEEEEESSCC-TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEEETT-EEEECCCEEECC
T ss_pred HHHhcCCCEEEEeCCCC-CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcCC-EEEEEEEEecCC-CeEEEeeEEEec
Confidence 35678999999998877 899999999999999999988766677999999996 999999998754 444444433221
Q ss_pred e---------------cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 92 K---------------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 92 ~---------------~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
. .+. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|||+|||.+
T Consensus 237 ~~~~~d~~q~~~~ky~~~~-~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~rPG~t 313 (346)
T 3se7_A 237 SHGFFKIHQESTPESGSDN-SAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMT 313 (346)
T ss_dssp C--------------CGGG-SCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTSCEEEEEEESSCCCS
T ss_pred CCCCcCcccchhccccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 1 111 2345788999999999999999999999999999999999988899999999999853
No 62
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.86 E-value=9.8e-21 Score=186.40 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=110.1
Q ss_pred CHHHHHHHH--HhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEc-CCCeE
Q 013661 5 DLESARRAG--KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG-RDKSI 81 (438)
Q Consensus 5 s~ee~~~~~--~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d-~~G~~ 81 (438)
+.+++.+++ ++++||+|+||..++ ||+|+++++|.+|+.++++. . ..+++||||+| +|+++.++.| .+|++
T Consensus 135 ~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~--~--~~~lvee~i~G-~e~~v~~~~d~~~G~~ 208 (331)
T 2pn1_A 135 TMASFEEALAAGEVQLPVFVKPRNGS-ASIEVRRVETVEEVEQLFSK--N--TDLIVQELLVG-QELGVDAYVDLISGKV 208 (331)
T ss_dssp SHHHHHHHHHTTSSCSCEEEEESBC----------------------------CEEEEECCCS-EEEEEEEEECTTTCCE
T ss_pred cHHHhhhhhhcccCCCCEEEEeCCCC-CCCCeEEeCCHHHHHHHHHh--C--CCeEEEecCCC-cEEEEEEEEecCCCeE
Confidence 566777666 578999999998776 89999999999999988754 2 34999999997 9999999998 77887
Q ss_pred EEEeee-eeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceee
Q 013661 82 LCYPVV-ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 82 ~~~~~~-e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~ 160 (438)
...... +...+.|......++ .. +++.+++.+++++||++|++++||+.+ +|.+|++|+|||++++.+ ...
T Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~--~~----~~~~~~~~~~~~~lg~~G~~~vd~~~~-~g~~~~iEiN~R~~g~~~-~~~ 280 (331)
T 2pn1_A 209 TSIFIKEKLTMRAGETDKSRSV--LR----DDVFELVEHVLDGSGLVGPLDFDLFDV-AGTLYLSEINPRFGGGYP-HAY 280 (331)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE--CC----HHHHHHHHHHHTTTCCCEEEEEEEEEE-TTEEEEEEEESSCCTTHH-HHH
T ss_pred EEEEEEEEEEecCCceeEeEEe--cc----HHHHHHHHHHHHHhCCcceEEEEEEEc-CCCEEEEEEeCCCCCchH-HHH
Confidence 643333 333345654332222 22 458889999999999999999999965 678999999999987543 456
Q ss_pred eccCcHHHHHHHHHhCCCCCC
Q 013661 161 SCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~G~~l~~ 181 (438)
.+|+|+++.+++.++|.+++.
T Consensus 281 ~~G~~~~~~~~~~~~g~~~~~ 301 (331)
T 2pn1_A 281 ECGVNFPAQLYRNLMHEINVP 301 (331)
T ss_dssp HTTCCHHHHHHHHHTTCCCCC
T ss_pred HcCCCHHHHHHHHHcCCCCCc
Confidence 779999999999999999875
No 63
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.86 E-value=8.8e-21 Score=184.34 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=122.8
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEE
Q 013661 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH 91 (438)
Q Consensus 12 ~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~ 91 (438)
++++++||+|+||..++ +|+|++++++.+|+.++++.+......++||+||+| +|+++.++ +|++ ++..+...
T Consensus 133 ~~~~~~~p~vvKP~~g~-~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~g-~e~~v~~~---~g~~--~~~~~~~~ 205 (306)
T 1iow_A 133 EISALGLPVIVKPSREG-SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL---GEEI--LPSIRIQP 205 (306)
T ss_dssp HHHTTCSSEEEEETTCC-TTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCCC-CEEEEEEE---TTEE--CCCEEEEC
T ss_pred HHhccCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcCC-EEEEEEEE---CCCc--cceEEEEe
Confidence 77889999999998876 899999999999999999877644566999999996 99999998 3443 23222221
Q ss_pred ec-----------CeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCce--
Q 013661 92 KE-----------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT-- 158 (438)
Q Consensus 92 ~~-----------g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~-- 158 (438)
.. |. .....|+.++++..+++.+++.+++++||+.|++++||+++++|++||+|+|||+|.+++..
T Consensus 206 ~~~~~~~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s~~p 284 (306)
T 1iow_A 206 SGTFYDYEAKFLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVP 284 (306)
T ss_dssp SSSSSCHHHHHTCSC-CEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESSCCCSTTCHHH
T ss_pred CCCeEchhheecCCC-eeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCCCCCCCCCHHH
Confidence 11 21 33467888999999999999999999999999999999999888999999999999765411
Q ss_pred --eeeccCcHHHHHHHHH
Q 013661 159 --IESCYTSQFEQHMRAV 174 (438)
Q Consensus 159 --~~~~~~~~~~~~~~~~ 174 (438)
...+|+|+.+.+++.+
T Consensus 285 ~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 285 MAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 2345777777666553
No 64
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.85 E-value=2.8e-21 Score=193.36 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=121.1
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEE-EEEEEcCCCeEEEEee
Q 013661 8 SARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELA-VIVVRGRDKSILCYPV 86 (438)
Q Consensus 8 e~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~s-v~~~~d~~G~~~~~~~ 86 (438)
++.+ ++++|||+||||..++ +|.|+.+++|++||.++++.+...+..+|||+||+|.+|++ +.+.. +|++...++
T Consensus 177 ~~~~-~~~lg~PvvVKP~~g~-ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G~~E~svi~v~v--~g~~~~~~~ 252 (367)
T 2pvp_A 177 NALD-LMNFNFPFIVKPSNAG-SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGCKI--KKDFCFSYI 252 (367)
T ss_dssp GHHH-HCCSCSCEEEEESSCC-TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTTCEEEEEEEEEE--TTEEEEEEE
T ss_pred HHHH-HhccCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCCCceeeEEEEEE--CCEEEEEEE
Confidence 5556 7789999999998877 89999999999999999988766556799999999658977 44444 566544443
Q ss_pred eeeEE-----e------cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 87 VETIH-----K------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 87 ~e~~~-----~------~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
+... . .|. .....|+.++++..+++++++.+++++||+.|++++||+++ +|++||+|||||||.+.
T Consensus 253 -ei~~~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~ 329 (367)
T 2pvp_A 253 -EEPNKQEFLDFKQKYLDFS-RNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPIPGSLA 329 (367)
T ss_dssp -EETTTTEEECCCCSSCCSC-CCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESSCGGGG
T ss_pred -EEecCCceEcccccccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCCCCCCc
Confidence 2211 1 111 22356888999999999999999999999999999999999 88899999999998643
Q ss_pred CceeeeccCcHHHHHHHHHhCCCC
Q 013661 156 HHTIESCYTSQFEQHMRAVVGLPL 179 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~l 179 (438)
+...- ++.+...+.+.+.++
T Consensus 330 ~s~~p----~~~~l~~~li~~~~~ 349 (367)
T 2pvp_A 330 NYLFD----DFKTTLENLAQSLPK 349 (367)
T ss_dssp GGGSS----SHHHHHHHHHHHCC-
T ss_pred ccccC----CHHHHHHHHHhCccc
Confidence 32111 444555555545444
No 65
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.85 E-value=2.5e-20 Score=183.35 Aligned_cols=137 Identities=23% Similarity=0.218 Sum_probs=112.2
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeee----e-
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE----T- 89 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e----~- 89 (438)
++|||+||||..++ +|+|+.+++|++||.++++.+...+..+|||+||+|.+|+++.++.+.++.+....... .
T Consensus 148 ~~g~PvvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~ 226 (322)
T 2fb9_A 148 PFDPPFFVKPANTG-SSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFY 226 (322)
T ss_dssp CSCSCEEEEETTCC-TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEECCEE
T ss_pred ccCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeCCCcc
Confidence 68999999998877 89999999999999999988776667799999999658999999976544332221111 0
Q ss_pred ----EEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013661 90 ----IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 90 ----~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~s 154 (438)
.+..|. ...+.|+.++++..+++++++.+++++||++|++++||+++ +|++||+|||+|||.+
T Consensus 227 ~~~~k~~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t 293 (322)
T 2fb9_A 227 DYETKYTPGR-AELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNTIPGFT 293 (322)
T ss_dssp ETTTEEECCE-EEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEESSCCCS
T ss_pred CHHHcccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEECCCCCC
Confidence 111232 34567999999999999999999999999999999999999 8899999999999964
No 66
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.83 E-value=2.4e-20 Score=181.73 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=104.8
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEE-eeeeeE
Q 013661 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCY-PVVETI 90 (438)
Q Consensus 12 ~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~-~~~e~~ 90 (438)
+++++|||+||||..++ +|+|+.++++.+|+.++++.+......++|||||+| +|+++.++ +|+++.. .+....
T Consensus 128 ~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~G-~e~~v~v~---~g~~~~~~~~~~~~ 202 (307)
T 3r5x_A 128 ELDKLGFPLVVKPNSGG-SSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKG-EEITCSIF---DGKQLPIISIRHAA 202 (307)
T ss_dssp HHHHHCSSEEEEECC-----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEE---TTEECCCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcCC-EEEEEEEE---CCEEeeEEEEEcCC
Confidence 67789999999998876 899999999999999998876544456999999997 99999986 3444211 111110
Q ss_pred E-ecC-----eEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013661 91 H-KEN-----ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 91 ~-~~g-----~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~sg 155 (438)
. .+. .......|..++++..+++++++.+++++||++|++++||+++ +|++||+|+|||||.+.
T Consensus 203 ~~~~~~~~~~~~g~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~ 272 (307)
T 3r5x_A 203 EFFDYNAKYDDASTIEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPGMTQ 272 (307)
T ss_dssp EEETTEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCCCST
T ss_pred cccChhhcCCCCCCeEecCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCCCCc
Confidence 0 011 0011223788999999999999999999999999999999999 68899999999999654
No 67
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.80 E-value=1.5e-19 Score=173.03 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHh--cCC--CCcEEEeeccCC-CeEEEEEEEEcC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL--GGF--DRGLYVEKWAPF-VKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~--~~~--~~~~lvEe~I~g-~~e~sv~~~~d~ 77 (438)
+++.+++.++++++|||+|+||..++ +|+|++++++.+|+.++++.+ ... ...+++||||+| +.|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~p~vvKp~~g~-~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~--- 184 (280)
T 1uc8_A 109 ATDREEALRLMEAFGYPVVLKPVIGS-WGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV--- 184 (280)
T ss_dssp ESSHHHHHHHHHHHCSSEEEECSBCC-BCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEE---
T ss_pred eCCHHHHHHHHHHhCCCEEEEECCCC-CcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEE---
Confidence 56888999999999999999998876 899999999999999888764 221 345999999997 688888876
Q ss_pred CCeEEEEeeeee----EEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 78 DKSILCYPVVET----IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 78 ~G~~~~~~~~e~----~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+|+++.. ... +..+........|..+++ ++.+++.+++++||+ |++++||+++++| +||+|+|||++.
T Consensus 185 ~~~~~~~--~~~~~~~~~~~~~~g~~~~p~~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~g-~~~iEiN~r~g~ 256 (280)
T 1uc8_A 185 GERAIAA--IYRRSAHWITNTARGGQAENCPLTE----EVARLSVKAAEAVGG-GVVAVDLFESERG-LLVNEVNHTMEF 256 (280)
T ss_dssp TTEEEEE--EEC--------------CEECCCCH----HHHHHHHHHHHHTTC-SEEEEEEEEETTE-EEEEEEETTCCC
T ss_pred CCEEEEE--EEEecCCccccccCCccccCCCCCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCCC-eEEEEEeCCCCc
Confidence 3454321 111 110000111234666765 688999999999999 9999999999876 999999999985
Q ss_pred CCCceeeeccCcHHHHHHHHHhCC
Q 013661 154 SGHHTIESCYTSQFEQHMRAVVGL 177 (438)
Q Consensus 154 sg~~~~~~~~~~~~~~~~~~~~G~ 177 (438)
+. ....+|+|+.+.+++.++|.
T Consensus 257 ~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 257 KN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp TT--HHHHHCCCHHHHHHHHHHHT
T ss_pred cc--hheeeccCHHHHHHHHHHhh
Confidence 43 45678899999999888764
No 68
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.79 E-value=1.7e-18 Score=168.92 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=107.8
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeeeeEEecC
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKEN 94 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e~~~~~g 94 (438)
+++||+|+||..++ ||+|++++++ .. ..+++|+||+| +|+++.++.+ +.+.............
T Consensus 131 ~~~~P~vvKP~~g~-gs~Gv~~v~~-----------~~--~~~lvEe~I~G-~e~sv~v~~g--~~~~~~~~~~~~~~~~ 193 (305)
T 3df7_A 131 PLDCKFIIKPRTAC-AGEGIGFSDE-----------VP--DGHIAQEFIEG-INLSVSLAVG--EDVKCLSVNEQIINNF 193 (305)
T ss_dssp CCSSSEEEEESSCC-----CBCCSS-----------CC--TTEEEEECCCS-EEEEEEEEES--SSEEEEEEEEEEEETT
T ss_pred cCCCCEEEEeCCCC-CCCCEEEEec-----------CC--CCEEEEeccCC-cEEEEEEEeC--CeEEEEEEeeEeccCc
Confidence 57899999998876 8999999998 23 44999999996 9999999974 2444333322222223
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHhc-CcceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHHH
Q 013661 95 ICHIVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRA 173 (438)
Q Consensus 95 ~~~~~~~p~~l~~~~~~~i~~~a~~i~~~l-g~~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~ 173 (438)
.......|+.++++..+++++++.+++++| |++|++++||+++ |++||+|||||++++......++|+|+.+.+++.
T Consensus 194 ~~~g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 194 RYAGAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC
T ss_pred eeccccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc
Confidence 344556788999999999999999999999 9999999999996 5699999999999754445556789999888876
No 69
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.75 E-value=2.2e-17 Score=162.24 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=99.3
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-----CCcEEEeeccCCCeEEEEEEEEcCC-CeEEEEeeee
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----DRGLYVEKWAPFVKELAVIVVRGRD-KSILCYPVVE 88 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----~~~~lvEe~I~g~~e~sv~~~~d~~-G~~~~~~~~e 88 (438)
+++||+||||..++ ||+|+++++|.+|+.++++.+... ...++|||||+| .|+++.++.+.- +++..+....
T Consensus 124 ~l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e~~~~~~~~~~~~~v~~~~~~g 201 (334)
T 2r85_A 124 DIEKPVIVKPHGAK-GGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDR 201 (334)
T ss_dssp GCCSCEEEEECC-----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEE
T ss_pred HcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ceeEEEEeecCcCceeeeeeecc
Confidence 46799999998876 899999999999999998876421 155999999997 898876665422 2122111111
Q ss_pred e--EEecC--------------eEEEEEe---CCCCCHHHHHHHHHHHHHHHHhc-----CcceEEEEEEEEeCCCcEEE
Q 013661 89 T--IHKEN--------------ICHIVKA---PAAVPWKISELATDVAHKAVSSL-----EGAGIFAVELFWTNNGQILL 144 (438)
Q Consensus 89 ~--~~~~g--------------~~~~~~~---p~~l~~~~~~~i~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~~v 144 (438)
. ...+| ....... |+.++++..+++.+++.+++++| ++.|++++||+++++|++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~v 281 (334)
T 2r85_A 202 RYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVV 281 (334)
T ss_dssp EEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEE
T ss_pred EEEeccCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEE
Confidence 1 00000 0011122 77899889999999999999999 88999999999998888999
Q ss_pred EEEcCCCCC
Q 013661 145 NEVAPRPHN 153 (438)
Q Consensus 145 iEiNpR~~~ 153 (438)
+|+|||+++
T Consensus 282 iEiN~R~g~ 290 (334)
T 2r85_A 282 FEISARIVA 290 (334)
T ss_dssp EEEECSCCG
T ss_pred EEEeCCcCC
Confidence 999999996
No 70
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.73 E-value=1.8e-17 Score=164.84 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=101.9
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCC-----C--CcEEEeeccCCCeEEEEEEEEc-CCCeEEEEee
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----D--RGLYVEKWAPFVKELAVIVVRG-RDKSILCYPV 86 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----~--~~~lvEe~I~g~~e~sv~~~~d-~~G~~~~~~~ 86 (438)
+++||+||||..++ +|+|+++++|.+|+.++++.+... . .+++|||||+| .|+++..+.. -++++..+.+
T Consensus 148 e~~~PvVVK~~~~a-~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~i 225 (361)
T 2r7k_A 148 DIDGTVIVKFPGAR-GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGM 225 (361)
T ss_dssp GCCSCEEEECSCCC-C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEE
T ss_pred HcCCCEEEeeCCCC-CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEe
Confidence 34799999998776 999999999999999998765210 1 35999999997 8888655543 2344444444
Q ss_pred eeeEEe--cCeE--------------EEEEe---CCCCCHHHHHHHHHHHHHHHHhc------CcceEEEEEEEEeCCCc
Q 013661 87 VETIHK--ENIC--------------HIVKA---PAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQ 141 (438)
Q Consensus 87 ~e~~~~--~g~~--------------~~~~~---p~~l~~~~~~~i~~~a~~i~~~l------g~~G~~~ve~~~~~~g~ 141 (438)
...+.. +|.+ ..+.. |+.+++++.+++.+++.+++++| ++.|++++||+++++|+
T Consensus 226 d~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~ 305 (361)
T 2r7k_A 226 DKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLE 305 (361)
T ss_dssp EEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSC
T ss_pred cceEEeecccceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCC
Confidence 322211 1111 13333 88899999999999999999999 88999999999998888
Q ss_pred EEEEEEcCCCCC
Q 013661 142 ILLNEVAPRPHN 153 (438)
Q Consensus 142 ~~viEiNpR~~~ 153 (438)
+||+|+|||+++
T Consensus 306 i~V~EIapR~gG 317 (361)
T 2r7k_A 306 LVVFEMSARVDG 317 (361)
T ss_dssp EEEEEEESSBCG
T ss_pred EEEEEEcCCCCC
Confidence 999999999996
No 71
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.62 E-value=1.9e-16 Score=154.67 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=87.5
Q ss_pred hhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEc-CCCeEEEEeeeeeEE-e
Q 013661 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG-RDKSILCYPVVETIH-K 92 (438)
Q Consensus 15 ~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d-~~G~~~~~~~~e~~~-~ 92 (438)
+++|||||||..++ ||+|+++++| +|+..+++.+. ..++|||||+| .+++.+++.+ .+|++..+.....+. .
T Consensus 123 ~i~~PviVKp~~g~-ggkG~~~v~~-eel~~~~~~~~---~~~IiEEfI~g-~~~~~~~f~~~~~g~~e~~~~~~r~e~~ 196 (320)
T 2pbz_A 123 KPDELYFVRIEGPR-GGSGHFIVEG-SELEERLSTLE---EPYRVERFIPG-VYLYVHFFYSPILERLELLGVDERVLIA 196 (320)
T ss_dssp CSSCCEEEECC-------------C-EECSCCCC-------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred CcCCcEEEEECCCC-CCCCEEEECh-HHHHHHHHhcC---CCEEEEeeece-EecceeEEeccccCceeEEEecceEEEE
Confidence 46999999998877 9999999999 99987665442 34999999997 6667666554 356655544443322 2
Q ss_pred cCeEEE-------EEe---CCCCCHHHHHHHHHHHHHHHHhc------CcceEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013661 93 ENICHI-------VKA---PAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 93 ~g~~~~-------~~~---p~~l~~~~~~~i~~~a~~i~~~l------g~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+|.+.. ++. |+.+++++.+++.+++.+++++| ++.|++++| +++||++||+|+|||+++
T Consensus 197 ~g~~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~G 271 (320)
T 2pbz_A 197 DGNARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASRIDG 271 (320)
T ss_dssp CSSSSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESSBCS
T ss_pred CCeeecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCCCCC
Confidence 332211 222 77888889999999999999999 999999999 577788999999999876
No 72
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.55 E-value=1.8e-15 Score=142.27 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=109.4
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCC-----CCCCcCeEE-eCCHHHHHHHHHHhcCC---------CCcEEEeeccCCC
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRL-----AYDGRGNAV-AKSEEELSSAITALGGF---------DRGLYVEKWAPFV 66 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~-----g~gg~Gv~~-v~~~~el~~~~~~~~~~---------~~~~lvEe~I~g~ 66 (438)
.+++.+++.++++++|||+||||..+ + +|.|+.+ ++|++|+.++++.+... ...++||+|++++
T Consensus 41 ~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~-~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g 119 (238)
T 1wr2_A 41 LAKTLDEALEYAKEIGYPVVLKLMSPQILHKS-DAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPG 119 (238)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEEECTTCCCHH-HHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCC
T ss_pred EeCCHHHHHHHHHHhCCCEEEEEccCCCCcCC-ccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCC
Confidence 35788999999999999999999876 4 5788988 79999999998765321 2469999999977
Q ss_pred eEEEEEEEEcC-CCeEEEEeeee-eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEE----------
Q 013661 67 KELAVIVVRGR-DKSILCYPVVE-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVEL---------- 134 (438)
Q Consensus 67 ~e~sv~~~~d~-~G~~~~~~~~e-~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~---------- 134 (438)
+|+.+.++.|. .|.+..++... .++...+.....+| ++++..+++.+.+.++...+|++|...+|+
T Consensus 120 ~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~P--l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l 197 (238)
T 1wr2_A 120 REVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVP--ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKV 197 (238)
T ss_dssp EEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEESS--CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecCC--CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 99999999987 56665555211 11111233444445 999999999999999999999999755552
Q ss_pred --EEeCCCc-EEEEEEcCCCC
Q 013661 135 --FWTNNGQ-ILLNEVAPRPH 152 (438)
Q Consensus 135 --~~~~~g~-~~viEiNpR~~ 152 (438)
++.+.++ ++++||||+.-
T Consensus 198 ~~~~~~~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 198 SKLVDDLKDYIKEMDLNPVFV 218 (238)
T ss_dssp HHHHHHTTTTEEEEEEEEEEE
T ss_pred HHHHHcCCCCeEEEeccCeEE
Confidence 1222344 99999999975
No 73
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.53 E-value=4.7e-14 Score=136.95 Aligned_cols=155 Identities=13% Similarity=0.086 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeC-CHHHHHHHHHHhcCC-CCcEEEeeccCC--CeEEEEEEEEcCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAK-SEEELSSAITALGGF-DRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~-~~~el~~~~~~~~~~-~~~~lvEe~I~g--~~e~sv~~~~d~~ 78 (438)
+.+.+++.++++++| |+|+||..++ +|+|+++++ +.+++..+++.+... ...+++|+||+| +.|+++.++ +
T Consensus 141 ~~~~~~~~~~~~~~~-p~vvKP~~g~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~---~ 215 (316)
T 1gsa_A 141 TRNKAQLKAFWEKHS-DIILKPLDGM-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVV---D 215 (316)
T ss_dssp ESCHHHHHHHHHHHS-SEEEECSSCC-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEE---T
T ss_pred eCCHHHHHHHHHHcC-CEEEEECCCC-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEE---C
Confidence 568899999999999 9999998876 999999998 999999888776432 245999999997 467777665 4
Q ss_pred CeEEEEeeeee-----EEe---cCeEEEEEeCCCCCHHHHHHHHHHHHHHHHh---cCcceEEEEEEEEeCCCcEEEEEE
Q 013661 79 KSILCYPVVET-----IHK---ENICHIVKAPAAVPWKISELATDVAHKAVSS---LEGAGIFAVELFWTNNGQILLNEV 147 (438)
Q Consensus 79 G~~~~~~~~e~-----~~~---~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~---lg~~G~~~ve~~~~~~g~~~viEi 147 (438)
|++..+..... +.. .|. ...|..++++ +.+++.+++++ +|+ +.+++||+ |. ||+||
T Consensus 216 g~~~~~~~~r~~~~~~~~~~~~~gg---~~~~~~~~~~----~~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEv 282 (316)
T 1gsa_A 216 GEPVPYCLARIPQGGETRGNLAAGG---RGEPRPLTES----DWKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEI 282 (316)
T ss_dssp TEECSEEEEEECCSSCSCCCGGGTC---EEEEEECCHH----HHHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEE
T ss_pred CEEeeeEEEEeCCCCCceeEEccCC---ccccCCCCHH----HHHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEE
Confidence 56543222111 001 021 1235556654 44555555554 576 68889988 54 89999
Q ss_pred cCCCCCCCCceeeeccCcHHHHHHHHHh
Q 013661 148 APRPHNSGHHTIESCYTSQFEQHMRAVV 175 (438)
Q Consensus 148 NpR~~~sg~~~~~~~~~~~~~~~~~~~~ 175 (438)
|+|.+.........+|.|+.+..++.+.
T Consensus 283 N~r~~~~~~~~~~~~g~~~~~~~~~~~~ 310 (316)
T 1gsa_A 283 NVTSPTCIREIEAEFPVSITGMLMDAIE 310 (316)
T ss_dssp ECSSCCCHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCcchHHHHHhhCcCHHHHHHHHHH
Confidence 9985321223344678888887776654
No 74
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.50 E-value=9.4e-14 Score=135.99 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=96.1
Q ss_pred cCCHHHHHHHHHhh--CCcEEEEecCCCCCC---cCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCC-CeEEEEEEEEc
Q 013661 3 VNDLESARRAGKQF--GYPLMVKSKRLAYDG---RGNAVAKSEEELSSAITALGGFDRGLYVEKWAPF-VKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~i--gyPvvvKP~~~g~gg---~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g-~~e~sv~~~~d 76 (438)
+.+.+++.+++++. +||+|+||..+. || +|+.++++.++|.. ....+++|+||++ +.++++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~P~vvKP~~g~-g~~~s~gv~~v~~~~~l~~-------~~~~~lvqe~i~~~g~~~~v~v~-- 188 (324)
T 1z2n_X 119 VKSKEEVIQLLQSKQLILPFIVKPENAQ-GTFNAHQMKIVLEQEGIDD-------IHFPCLCQHYINHNNKIVKVFCI-- 188 (324)
T ss_dssp ESSHHHHHHHHHTTCSCSSEEEEESBCS-SSSGGGEEEEECSGGGGTT-------CCSSEEEEECCCCTTCEEEEEEE--
T ss_pred eCCHHHHHHHHHHcCCCCCEEEeeCCCC-CCccceeeEEEeCHHHHhh-------cCCCEEEEEccCCCCcEEEEEEE--
Confidence 56788888888875 499999998754 78 99999999988753 1345999999985 588888776
Q ss_pred CCCeEEEEeeee--eEEecC---------------------------------eE----E-EEEeCCCCCHHHHHHHHHH
Q 013661 77 RDKSILCYPVVE--TIHKEN---------------------------------IC----H-IVKAPAAVPWKISELATDV 116 (438)
Q Consensus 77 ~~G~~~~~~~~e--~~~~~g---------------------------------~~----~-~~~~p~~l~~~~~~~i~~~ 116 (438)
+|++....... ++..++ .. . ....|..+++ ++++++
T Consensus 189 -g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~ 264 (324)
T 1z2n_X 189 -GNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSE---AEMRDL 264 (324)
T ss_dssp -TTEEEEEEECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCH---HHHHHH
T ss_pred -CCEEEEEEecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccCCCH---HHHHHH
Confidence 24443321110 000000 00 0 0001222331 579999
Q ss_pred HHHHHHhcCcceEEEEEEEEe-CCCcEEEEEEcCCCCCCCC
Q 013661 117 AHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 117 a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~~sg~ 156 (438)
+.+++++||+. ++++||+++ ++|++||+|||+|||.++.
T Consensus 265 a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~ 304 (324)
T 1z2n_X 265 AYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYGGK 304 (324)
T ss_dssp HHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTTSC
T ss_pred HHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcCCC
Confidence 99999999996 899999998 4588999999999986543
No 75
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.48 E-value=3.5e-14 Score=153.30 Aligned_cols=164 Identities=16% Similarity=0.081 Sum_probs=112.5
Q ss_pred cCCHHHHHHHH-HhhCCcEEEEecCCCCCCcCeEEeC---CHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCC
Q 013661 3 VNDLESARRAG-KQFGYPLMVKSKRLAYDGRGNAVAK---SEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~-~~igyPvvvKP~~~g~gg~Gv~~v~---~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~ 78 (438)
+.+.+++.+++ +.+|||+||||..++ +|+||.+++ +.+|+.++++.+......++|||||+| +|+++.++.
T Consensus 505 ~~~~~ea~~~~~~~~g~PvVVKP~~G~-~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~G-~E~~v~Vvg--- 579 (750)
T 3ln6_A 505 FTDRKEALNYFSQIQDKPIVVKPKSTN-FGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIEG-TEYRFFVLE--- 579 (750)
T ss_dssp EETTTTHHHHHHHSSSSCEEEEETTCC-SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEET---
T ss_pred ECCHHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccCC-CEEEEEEEC---
Confidence 45677887777 778999999998776 899999999 999999999876433456999999996 999999883
Q ss_pred CeEEEEeee--eeEEec----------------------------------------------------CeEE-------
Q 013661 79 KSILCYPVV--ETIHKE----------------------------------------------------NICH------- 97 (438)
Q Consensus 79 G~~~~~~~~--e~~~~~----------------------------------------------------g~~~------- 97 (438)
|+++..-.. .++..+ |...
T Consensus 580 g~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~N 659 (750)
T 3ln6_A 580 GDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSN 659 (750)
T ss_dssp TEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCC
T ss_pred CEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeeccc
Confidence 344211100 111000 0000
Q ss_pred ----EEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC--------CCcEEEEEEcCCCCCCCCce-eeeccC
Q 013661 98 ----IVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN--------NGQILLNEVAPRPHNSGHHT-IESCYT 164 (438)
Q Consensus 98 ----~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~--------~g~~~viEiNpR~~~sg~~~-~~~~~~ 164 (438)
+... ..++++..++.+++.++++++|+. +++||++.++ .+.++|||||++|+-.+|.. ....+.
T Consensus 660 ls~Gg~~~--d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g~~~ 736 (750)
T 3ln6_A 660 ISTGGDSI--DVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNPLMYMHTYCQEGPGQ 736 (750)
T ss_dssp TTTTCEEE--ECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCHHHHSCSBSCCC
T ss_pred ccCCCcee--eccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCcchhhhcCcccCCCC
Confidence 0000 123344456889999999999975 8999999874 34678999999998544432 345566
Q ss_pred cHHHHHHHHH
Q 013661 165 SQFEQHMRAV 174 (438)
Q Consensus 165 ~~~~~~~~~~ 174 (438)
+.-+..++..
T Consensus 737 ~v~~~ii~~l 746 (750)
T 3ln6_A 737 SITPRILAKL 746 (750)
T ss_dssp CCHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 6666656543
No 76
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.46 E-value=9.7e-14 Score=149.56 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=111.3
Q ss_pred cCCHHHHHHHH-HhhCCcEEEEecCCCCCCcCeEEe----CCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcC
Q 013661 3 VNDLESARRAG-KQFGYPLMVKSKRLAYDGRGNAVA----KSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~-~~igyPvvvKP~~~g~gg~Gv~~v----~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~ 77 (438)
+.+.+++.+++ +++|||+||||..++ +|+||.++ +|.+|+.++++.+...+..++|||||+| +|++|.++.
T Consensus 510 ~~~~~ea~~~~~~~~g~PvVVKP~~g~-~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~G-~Ei~v~Vlg-- 585 (757)
T 3ln7_A 510 FTSLEKAVASYALFENRAVVIKPKSTN-YGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVG-TEYRFFVLG-- 585 (757)
T ss_dssp ESCHHHHHHGGGGSSSSCEEEEESSCS-TTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCCS-EEEEEEEET--
T ss_pred ECCHHHHHHHHHHhcCCCEEEEeCCCC-CCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCC-cEEEEEEEC--
Confidence 56888887777 789999999998876 89999999 8999999998766433455999999997 999999983
Q ss_pred CCeEEEEeee--eeEEe----------------------------------------------------cCeEEE-----
Q 013661 78 DKSILCYPVV--ETIHK----------------------------------------------------ENICHI----- 98 (438)
Q Consensus 78 ~G~~~~~~~~--e~~~~----------------------------------------------------~g~~~~----- 98 (438)
|+++..-.. .++.- .|....
T Consensus 586 -gkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~ 664 (757)
T 3ln7_A 586 -DETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANS 664 (757)
T ss_dssp -TEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSC
T ss_pred -CEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeeccc
Confidence 454321110 00000 010000
Q ss_pred EE----eCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeC--------CCcEEEEEEcCCCCCCCCce-eeeccCc
Q 013661 99 VK----APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN--------NGQILLNEVAPRPHNSGHHT-IESCYTS 165 (438)
Q Consensus 99 ~~----~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~--------~g~~~viEiNpR~~~sg~~~-~~~~~~~ 165 (438)
.. .....++++.+++++++.++++++|+ .+++||++.++ ++.+.|+|||++|+-.+|.. ...++.+
T Consensus 665 Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl-~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~h~~p~~g~~~~ 743 (757)
T 3ln7_A 665 NISTGGDSIDMTDEMHESYKQLAVGITKAMGA-AVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHIFPYAGKSRR 743 (757)
T ss_dssp CGGGTCCEEECTTTSCHHHHHHHHHHHHHHTC-SEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHHHHSCSSSCCCC
T ss_pred ccccCccceeccccCCHHHHHHHHHHHHHhCC-CEEEEEEEecCccccccccCCCeEEEEEcCCcchhhhhccccCCCCc
Confidence 00 00012334445688899999999998 59999999872 24578999999998433332 2344566
Q ss_pred HHHHHHHHH
Q 013661 166 QFEQHMRAV 174 (438)
Q Consensus 166 ~~~~~~~~~ 174 (438)
.-...++..
T Consensus 744 v~~~ii~~l 752 (757)
T 3ln7_A 744 LTQNVIKML 752 (757)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 555555543
No 77
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.40 E-value=8.1e-13 Score=128.13 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=97.2
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeeee--
Q 013661 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE-- 88 (438)
Q Consensus 11 ~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~e-- 88 (438)
++.+.+|||+|+||..++ +|+||.+++|+++++..++.+......+++||||+.++++.+.++ +|++..+-...
T Consensus 146 ~~~~~~g~PvVvK~~~Gs-~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~Vv---Gg~v~a~~Rr~~~ 221 (309)
T 1i7n_A 146 EMLTLPTFPVVVKIGHAH-SGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKI---GNNYKAYMRTSIS 221 (309)
T ss_dssp GGSSCCCSSEEEEESSCS-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEE---TTEEEEEEEESSC
T ss_pred hhhhccCCCEEEEeCCCC-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecCCCceEEEEEE---CCEEEEEEEEcCC
Confidence 345678999999998765 999999999999998888754322234889999996688888888 35665433221
Q ss_pred -eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcC--CCCC
Q 013661 89 -TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHN 153 (438)
Q Consensus 89 -~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp--R~~~ 153 (438)
++..+ .......+.+++++ .++++.++.+++|.-++++||++.+++|++||+|||. .|+-
T Consensus 222 g~wrtN-~~~~~~e~~~l~~e----~~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~~~~P~~ 284 (309)
T 1i7n_A 222 GNWKTN-TGSAMLEQIAMSDR----YKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLI 284 (309)
T ss_dssp TTTSCS-CCCSSEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCC
T ss_pred CCCeec-CCcceeeecCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCc
Confidence 11111 11111224456665 7888999999995459999999999888899999999 8874
No 78
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=126.97 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=106.0
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee---e
Q 013661 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV---E 88 (438)
Q Consensus 12 ~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~---e 88 (438)
+.+.+|||+|+||..++ +|+||.+++|.++++..++.+......+++||||+.++++.+.++ +|++..+-.. .
T Consensus 164 ~~~~~g~PvVvK~~~Gs-~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VV---Gg~vva~~R~~~~g 239 (344)
T 2p0a_A 164 MVTAPHFPVVVKLGHAH-AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKI---GSNYKAYMRTSISG 239 (344)
T ss_dssp CCCCSSSSEEEEESSCC-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEE---TTEEEEEEEEESSS
T ss_pred hhhccCCCEEEEeCCCC-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccCCCccEEEEEE---CCEEEEEEEecCCC
Confidence 45578999999998765 999999999999999877654211234889999996688888888 3566544321 1
Q ss_pred eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcC--CCCCCCCceeeeccCcH
Q 013661 89 TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHNSGHHTIESCYTSQ 166 (438)
Q Consensus 89 ~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp--R~~~sg~~~~~~~~~~~ 166 (438)
++..+ .......+.+++++ .++++.++.+++|.-+++.||++.+++|++||+|||. .|+-.++ ...++.+.
T Consensus 240 ~wrtN-~~~~~~e~~~l~~e----~~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~--~~~~~~~I 312 (344)
T 2p0a_A 240 NWKAN-TGSAMLEQVAMTER----YRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEH--VEEDRQLM 312 (344)
T ss_dssp CSSTT-SSSEEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGG--HHHHHHHH
T ss_pred CCeec-CCceEEEeeCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccch--hhhHHHHH
Confidence 11111 11223335556765 7888999999995459999999999889899999999 7653221 12344566
Q ss_pred HHHHHHHH
Q 013661 167 FEQHMRAV 174 (438)
Q Consensus 167 ~~~~~~~~ 174 (438)
.+..++.+
T Consensus 313 a~~ii~~i 320 (344)
T 2p0a_A 313 ADLVVSKM 320 (344)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 79
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.38 E-value=2.9e-12 Score=127.98 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=104.5
Q ss_pred HHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCCeEEEEEEEEcCCCeEEEEeee---e
Q 013661 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV---E 88 (438)
Q Consensus 12 ~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~g~~e~sv~~~~d~~G~~~~~~~~---e 88 (438)
+++.+|||+|+||..++ +|+||.+++|.++++..++.+......+++||||+.++++.+.++ +|++..+-.. .
T Consensus 259 ~i~~~g~PvVvKp~~GS-~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~~g~DIRv~VV---Gg~vva~~Rr~~~g 334 (422)
T 1pk8_A 259 MLSSTTYPVVVKMGHAH-SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKI---GQNYKAYMRTSVSG 334 (422)
T ss_dssp CCCCSSSSEEEEESSCC-TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCCEEEEEEEEEE---TTEEEEEEEEESSS
T ss_pred hhhccCCCEEEEeCCCC-ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecCCCceEEEEEE---CCEEEEEEEEcCCC
Confidence 44568999999998765 999999999999999888754322234889999996688888888 3566543332 1
Q ss_pred eEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcC--CCCCCCCceeeeccCcH
Q 013661 89 TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHNSGHHTIESCYTSQ 166 (438)
Q Consensus 89 ~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp--R~~~sg~~~~~~~~~~~ 166 (438)
++..+ .......+..++++ .++++.++.+++|.-+++.||++.+++|.+||+|||. .|+-.++- ..++.+.
T Consensus 335 ~WrtN-vg~g~~e~i~lt~e----~~elA~kAaka~gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~--~~~~~~I 407 (422)
T 1pk8_A 335 NWKTN-TGSAMLEQIAMSDR----YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQ--DEDKQLI 407 (422)
T ss_dssp CSSTT-SSCEEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCH--HHHHHHH
T ss_pred Cceec-cCceeeeeeCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchh--hhHHHHH
Confidence 11111 11222335556765 7889999999994358999999999888899999999 77643221 1233444
Q ss_pred HHHHHHH
Q 013661 167 FEQHMRA 173 (438)
Q Consensus 167 ~~~~~~~ 173 (438)
.+..++.
T Consensus 408 A~~ii~~ 414 (422)
T 1pk8_A 408 VELVVNK 414 (422)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 80
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.22 E-value=1.6e-10 Score=114.28 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=90.9
Q ss_pred HHHHHHHH--hhCCcEEEEecCC-CCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCCCeEE
Q 013661 7 ESARRAGK--QFGYPLMVKSKRL-AYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 7 ee~~~~~~--~igyPvvvKP~~~-g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~e~sv~~~~d~~G~~~ 82 (438)
+++.+.++ .+|||+|+||..+ |+.|+||.++++.++|... ..+ ++|||||+ +++++.|.++. ++++
T Consensus 150 ~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-----~~~--~lvQefI~~~G~dirv~VvG---~~v~ 219 (346)
T 2q7d_A 150 DDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-----QPP--CVVQNFINHNAVLYKVFVVG---ESYT 219 (346)
T ss_dssp TTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-------CC--EEEEECCCCTTEEEEEEEET---TEEE
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-----CCC--EEEEEeeCCCCeEEEEEEEC---CEEE
Confidence 34544443 5789999999763 3237899999999998753 234 99999998 35999999883 3444
Q ss_pred EEeee--eeEEe-----------------cCeEEEEEeC-------CCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEE
Q 013661 83 CYPVV--ETIHK-----------------ENICHIVKAP-------AAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136 (438)
Q Consensus 83 ~~~~~--e~~~~-----------------~g~~~~~~~p-------~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~ 136 (438)
.+... .++.. .|. .....| +.+++ .+++++++.++.++||+. .+++|+++
T Consensus 220 ~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~-~~gvDii~ 295 (346)
T 2q7d_A 220 VVQRPSLKNFSAGTSDRESIFFNSHNVSKPES-SSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVS-LFGIDIII 295 (346)
T ss_dssp EEEEECCCCCC----CCCCEEEEGGGTSSTTC-CCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCC-EEEEEEEE
T ss_pred EEEEecCCCcCcCccccccccccceeeccCCc-cccccccccccccccCCC--hHHHHHHHHHHHHHhCCc-eEeeEEEe
Confidence 33211 00000 011 000011 22333 467999999999999997 45799999
Q ss_pred eC-CCcEEEEEEcCCCCCCCC
Q 013661 137 TN-NGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 137 ~~-~g~~~viEiNpR~~~sg~ 156 (438)
+. +|.+||+|||+-||-.+.
T Consensus 296 ~~~~g~~~VlEVN~~PG~~g~ 316 (346)
T 2q7d_A 296 NNQTGQHAVIDINAFPGYEGV 316 (346)
T ss_dssp CTTTCCEEEEEEEESCCCTTC
T ss_pred ecCCCCEEEEEEeCCcccccc
Confidence 86 578999999999985554
No 81
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=99.24 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=60.3
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhc-----CC-CCcEEEeeccCCCeEEEEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----GF-DRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~-----~~-~~~~lvEe~I~g~~e~sv~~~ 74 (438)
.+.+.+++.++++++|||+|+||..++ +|+|+.+++|.+|+.++++.+. .. ...++||+||+|.+|+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKASAGG-GGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEETTSC-CTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 467899999999999999999998876 8999999999999999987642 11 245999999998669887654
No 82
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.17 E-value=6.6e-12 Score=108.25 Aligned_cols=121 Identities=13% Similarity=0.010 Sum_probs=95.3
Q ss_pred EEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHh
Q 013661 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 319 (438)
Q Consensus 240 i~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~ 319 (438)
|++|.|++||+.|++.+.+. . .| +.+ ++++.++.||+.+.+.++.|.++||++.+| .+ |.+++
T Consensus 1 mg~~~~~~~A~~Ka~~aag~-~----lP-~~g--vliSv~d~dK~~l~~~a~~l~~lGf~i~AT----~G----Ta~~L- 63 (143)
T 2yvq_A 1 GSSGSSGHTAFLKAMLSTGF-K----IP-QKG--ILIGIQQSFRPRFLGVAEQLHNEGFKLFAT----EA----TSDWL- 63 (143)
T ss_dssp ----CCCCHHHHHHHTSCSC-C----CC-CSE--EEEECCGGGHHHHHHHHHHHHTTTCEEEEE----HH----HHHHH-
T ss_pred CCCcCCHHHHHHHHHHhcCC-C----CC-CCC--EEEEecccchHHHHHHHHHHHHCCCEEEEC----ch----HHHHH-
Confidence 57899999999999988763 2 12 345 588999999999999999999999999999 45 78888
Q ss_pred hhhhcCCeEEEEecc---cc----CcccccccCCCCCceEeccCCC--CCCCChhhHHHhhhCCCCCceEE
Q 013661 320 SAHERGIEIIIAGAG---GA----AHLPGMVAARTPLPVIGVPVRA--SALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 320 ~~~~~g~~v~i~~ag---~~----~~l~~~i~~~~~~pVi~~p~~~--~~~~g~~~l~s~~~~~~g~p~~t 381 (438)
++.|++|..+... +. +++.++|..+....|||+|.+. ...||.. +|+.++..||||+|
T Consensus 64 --~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~--iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 64 --NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYV--IRRTAVDSGIPLLT 130 (143)
T ss_dssp --HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHH--HHHHHHHTTCCEEC
T ss_pred --HHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcCCccHHH--HHHHHHHhCCCeEc
Confidence 4579999888763 24 7899999999999999999752 1224444 89999999999996
No 83
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.11 E-value=9e-11 Score=117.55 Aligned_cols=141 Identities=21% Similarity=0.221 Sum_probs=95.6
Q ss_pred ccCCHHHHHHHHHhhCCc-EEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC-------------CCcEEEeecc
Q 013661 2 EVNDLESARRAGKQFGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF-------------DRGLYVEKWA 63 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~-------------~~~~lvEe~I 63 (438)
.++|.+|+.++++++||| +||||..+. ||+ ||.+++|++|+.++++.+... ...++||+|+
T Consensus 24 ~~~s~eea~~aa~~lG~P~vVvK~~~~~-ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v 102 (388)
T 2nu8_B 24 ACTTPREAEEAASKIGAGPWVVKCQVHA-GGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT 102 (388)
T ss_dssp EESSHHHHHHHHHHHCSSCEEEEECCSS-SCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECC
T ss_pred EECCHHHHHHHHHHhCCCeEEEEEecCC-CCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEcc
Confidence 367899999999999999 999997742 444 999999999999999876431 1369999999
Q ss_pred CCCeEEEEEEEEcCC-C-eEEEEeee-----eeEEe---cCeEEEEEeCCC-CCHHHHHHHHHHHHHHHHhcCcceE---
Q 013661 64 PFVKELAVIVVRGRD-K-SILCYPVV-----ETIHK---ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGI--- 129 (438)
Q Consensus 64 ~g~~e~sv~~~~d~~-G-~~~~~~~~-----e~~~~---~g~~~~~~~p~~-l~~~~~~~i~~~a~~i~~~lg~~G~--- 129 (438)
++++|+.+.+++|.. | .++.++.. |.+.. .......+.|.. +++... +++++.||+.+.
T Consensus 103 ~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~a-------~~~~~~lG~~~~~~~ 175 (388)
T 2nu8_B 103 DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG-------RELAFKLGLEGKLVQ 175 (388)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHHH-------HHHHHHTTCCTHHHH
T ss_pred ccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHHH-------HHHHHHcCCCHHHHH
Confidence 966999999999876 3 55666522 22211 122333455654 777643 334444565431
Q ss_pred ------EEE-EEEEeCCCcEEEEEEcCCCC
Q 013661 130 ------FAV-ELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 130 ------~~v-e~~~~~~g~~~viEiNpR~~ 152 (438)
.++ +++.+ . +++.+||||+.-
T Consensus 176 ~~~~~l~~l~~~~~~-~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 176 QFTKIFMGLATIFLE-R-DLALIEINPLVI 203 (388)
T ss_dssp HHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHh-C-CEEEEEecceEE
Confidence 111 12222 3 599999999875
No 84
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=98.97 E-value=7.4e-10 Score=111.04 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=94.3
Q ss_pred ccCCHHHHHHHHHhhCC-cEEEEecC--CCCCCcC---------eEEeCCHHHHHHHHHHhcCC-------------CCc
Q 013661 2 EVNDLESARRAGKQFGY-PLMVKSKR--LAYDGRG---------NAVAKSEEELSSAITALGGF-------------DRG 56 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igy-PvvvKP~~--~g~gg~G---------v~~v~~~~el~~~~~~~~~~-------------~~~ 56 (438)
.++|.+|+.++++++|| |+||||.. +| .|+| |.+++|++|+.++++.+... ...
T Consensus 24 ~~~s~~ea~~~a~~lg~~PvVvK~~i~~GG-rGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~ 102 (395)
T 2fp4_B 24 VADTANEALEAAKRLNAKEIVLKAQILAGG-RGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNK 102 (395)
T ss_dssp EESSHHHHHHHHHHHTCSSEEEEECCSSSC-GGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCC
T ss_pred EECCHHHHHHHHHHcCCCcEEEEEeeccCC-CccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccce
Confidence 36789999999999999 89999963 33 3444 99999999999999876321 135
Q ss_pred EEEeeccCCCeEEEEEEEEcCC-C-eEEEEeee--eeEEe----cCeEEEEEe--CC-CCCHHHHHHHHHHHHHHHHhcC
Q 013661 57 LYVEKWAPFVKELAVIVVRGRD-K-SILCYPVV--ETIHK----ENICHIVKA--PA-AVPWKISELATDVAHKAVSSLE 125 (438)
Q Consensus 57 ~lvEe~I~g~~e~sv~~~~d~~-G-~~~~~~~~--e~~~~----~g~~~~~~~--p~-~l~~~~~~~i~~~a~~i~~~lg 125 (438)
++||+|++.++|+.+.+++|.. | .++.++.. .+++. +++.....+ |. ++++. .++++++.||
T Consensus 103 vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l~~~-------~a~~l~~~lg 175 (395)
T 2fp4_B 103 VMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDS-------QAQRMAENLG 175 (395)
T ss_dssp EEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCCCHH-------HHHHHHHHTT
T ss_pred EEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCCCHH-------HHHHHHHHhC
Confidence 9999999977999999999875 2 44444422 11111 123222222 33 36653 4566667777
Q ss_pred cceEEEEE----------EEEeCCCcEEEEEEcCCCC
Q 013661 126 GAGIFAVE----------LFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 126 ~~G~~~ve----------~~~~~~g~~~viEiNpR~~ 152 (438)
+.|...-+ ++.+ . +++++||||+.-
T Consensus 176 ~~~~~~~~~~~~l~~l~~l~~~-~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 176 FLGPLQNQAADQIKKLYNLFLK-I-DATQVEVNPFGE 210 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhhh-C-CeEEEEeeeEEE
Confidence 76532221 1222 3 599999999975
No 85
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=98.58 E-value=1.4e-08 Score=87.22 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=83.6
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc---ccCcccccc
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG---GAAHLPGMV 343 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag---~~~~l~~~i 343 (438)
..+.| +++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++ ..|++|..+.+| +.+++.++|
T Consensus 10 ~~g~V-~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~eGG~p~I~d~I 78 (152)
T 1b93_A 10 ARKHI-ALVAHDHCKQMLMSWVERHQPLLEQHVLYAT----GT----TGNLISR--ATGMNVNAMLSGPMGGDQQVGALI 78 (152)
T ss_dssp SSCEE-EEEECGGGHHHHHHHHHHTHHHHTTSEEEEE----TT----HHHHHHH--HHCCCCEEECCGGGTHHHHHHHHH
T ss_pred CCCEE-EEEEehhhHHHHHHHHHHHHHHhCCCEEEEc----cH----HHHHHHH--HhCceeEEEEecCCCCCchHHHHH
Confidence 34666 8889999999999999999999 9999999 67 8888853 269999888773 567899999
Q ss_pred cCCCCCceEeccC--CCC--CCCChhhHHHhhhCCCCCceEE
Q 013661 344 AARTPLPVIGVPV--RAS--ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 344 ~~~~~~pVi~~p~--~~~--~~~g~~~l~s~~~~~~g~p~~t 381 (438)
+......|||+|. ... .-||.. +++.+.-.+|||+|
T Consensus 79 ~~geIdlVInt~~pl~~~~h~~D~~~--IrR~A~~~~IP~~T 118 (152)
T 1b93_A 79 SEGKIDVLIFFWDPLNAVPHDPDVKA--LLRLATVWNIPVAT 118 (152)
T ss_dssp HTTCCCEEEEECCTTSCCTTHHHHHH--HHHHHHHTTCCEES
T ss_pred HCCCccEEEEcCCcccCCcccccHHH--HHHHHHHcCCCEEe
Confidence 9999999999998 322 245555 89999999999995
No 86
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=98.52 E-value=1.7e-08 Score=88.48 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=84.0
Q ss_pred CCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc---ccCcccccc
Q 013661 269 VLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG---GAAHLPGMV 343 (438)
Q Consensus 269 ~~~~v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag---~~~~l~~~i 343 (438)
..+.| +++..++||+.+.+.++.|.++ ||++.+| .+ |.+++++ ..|++|-.+.+| +.+++.++|
T Consensus 26 ~~g~V-~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~eGG~pqI~d~I 94 (178)
T 1vmd_A 26 KKKRI-ALIAHDRRKRDLLEWVSFNLGTLSKHELYAT----GT----TGALLQE--KLGLKVHRLKSGPLGGDQQIGAMI 94 (178)
T ss_dssp SSCEE-EEEECGGGHHHHHHHHHHSHHHHTTSEEEEC----HH----HHHHHHH--HHCCCCEECSCGGGTHHHHHHHHH
T ss_pred CCCEE-EEEEehhhHHHHHHHHHHHHHHhcCCEEEEc----hH----HHHHHHH--HhCceeEEEeecCCCCCchHHHHH
Confidence 34666 8889999999999999999999 9999999 45 8888853 269998887663 567899999
Q ss_pred cCCCCCceEeccC--C-CC-CCCChhhHHHhhhCCCCCceEE
Q 013661 344 AARTPLPVIGVPV--R-AS-ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 344 ~~~~~~pVi~~p~--~-~~-~~~g~~~l~s~~~~~~g~p~~t 381 (438)
+......|||+|. . .. .-||.. +++++.-.+|||+|
T Consensus 95 ~~geIdlVInt~dPl~~~~h~~D~~~--IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 95 AEGKIDVLIFFWDPLEPQAHDVDVKA--LIRIATVYNIPVAI 134 (178)
T ss_dssp HTTSCCEEEEECCSSSCCTTSCCHHH--HHHHHHHTTCCEES
T ss_pred HCCCccEEEEccCccCCCcccccHHH--HHHHHHHcCCCEEe
Confidence 9999999999998 3 23 467777 99999999999995
No 87
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.47 E-value=8.3e-08 Score=91.25 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=80.0
Q ss_pred HhhCCcEEEEecCCC----------CCCcC----eEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CCeEEEEEEEEcCC
Q 013661 14 KQFGYPLMVKSKRLA----------YDGRG----NAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRD 78 (438)
Q Consensus 14 ~~igyPvvvKP~~~g----------~gg~G----v~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-g~~e~sv~~~~d~~ 78 (438)
+.+++|+|+||..|. +.|-| +..+.|.+..-..- ......+.+++||||+ .++++.+.++.+
T Consensus 142 ~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~-~~vr~~~~~i~QEFI~~~G~DIRv~vVG~-- 218 (330)
T 3t7a_A 142 EVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGP-- 218 (330)
T ss_dssp EEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESC-CSCCSSSCEEEEECCCCSSEEEEEEEEST--
T ss_pred ccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChh-hhhccCCcEEEEeccCCCCceEEEEEECC--
Confidence 457899999997652 11223 34455443320000 0112235599999997 359999988843
Q ss_pred CeEE-EEeee-----eeEEecCeEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcceEEEEEEEEeCCCcEEEEEEcCCCC
Q 013661 79 KSIL-CYPVV-----ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 79 G~~~-~~~~~-----e~~~~~g~~~~~~~p~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
+++ ...+. ..+.++-+......|..|+++ .+++|.++++++|. +++++|++.++ +..||+|+|.++-
T Consensus 219 -~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~Lt~e----ek~iA~kaa~a~G~-~v~GVDlLrs~-~~~~V~EVNg~~f 291 (330)
T 3t7a_A 219 -DYAHAEARKSPALDGKVERDSEGKEVRYPVILNAR----EKLIAWKVCLAFKQ-TVCGFDLLRAN-GQSYVCDVNGFSF 291 (330)
T ss_dssp -TCEEEEEEECTTSSCBCCBCTTSCBCCEECCCCHH----HHHHHHHHHHHTTB-SEEEEEEEEET-TEEEEEEEEESCC
T ss_pred -EEEEEEEEeCCCCCCcEEEcCCCCceeeeecCCHH----HHHHHHHHHHHhCC-ceEEEEEEEEC-CccEEEEeCCCcc
Confidence 332 12111 112222111111246678876 67899999999996 89999999985 4589999999986
Q ss_pred C
Q 013661 153 N 153 (438)
Q Consensus 153 ~ 153 (438)
.
T Consensus 292 v 292 (330)
T 3t7a_A 292 V 292 (330)
T ss_dssp C
T ss_pred c
Confidence 4
No 88
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=98.41 E-value=4e-08 Score=82.75 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=87.1
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec---cccCcccccccCC
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMVAAR 346 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i~~~ 346 (438)
++ -++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++ ..|++|..+.+ |+.+++.++|+..
T Consensus 5 ~i-alsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~~eG~p~I~d~I~~g 73 (134)
T 2xw6_A 5 AL-ALIAHDAKKEEMVAFCQRHREVLARFPLVAT----GT----TGRRIEE--ATGLTVEKLLSGPLGGDQQMGARVAEG 73 (134)
T ss_dssp EE-EEEECGGGHHHHHHHHHHTHHHHTTSCEEEC----HH----HHHHHHH--HHCCCCEECSCGGGTHHHHHHHHHHTT
T ss_pred EE-EEEEecccHHHHHHHHHHHHHHhCCCEEEEc----cH----HHHHHHH--hhCceEEEEEecCCCCcchHHHHHHCC
Confidence 44 4567899999999999999999 9999999 45 8888853 26999888766 5677999999999
Q ss_pred CCCceEeccC--C-CC-CCCChhhHHHhhhCCCCCceEE-EEeCCcchHHHHHH
Q 013661 347 TPLPVIGVPV--R-AS-ALDGLDSLLSIVQMPRGVPVAT-VAINNATNAGLLAV 395 (438)
Q Consensus 347 ~~~pVi~~p~--~-~~-~~~g~~~l~s~~~~~~g~p~~t-v~~~~~~~Aa~~a~ 395 (438)
....|||+|. . .. .-||.. +++.+.-.+|||+| +. ++.|++.++
T Consensus 74 eIdlVInt~~pl~~~~h~~D~~~--IrR~A~~~~IP~~T~la---tA~a~v~al 122 (134)
T 2xw6_A 74 RILAVIFFRDPLTAQPHEPDVQA--LLRVCDVHGVPLATNPM---AAEALIPWL 122 (134)
T ss_dssp CEEEEEEECCTTTCCTTSCCSHH--HHHHHHHHTCCEECSHH---HHHHHHHHH
T ss_pred CccEEEEccCcccCCCccchHHH--HHHHHHHcCCCeEcCHH---HHHHHHHHH
Confidence 9999999998 3 22 467777 99999999999995 43 555665555
No 89
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.39 E-value=9.8e-07 Score=88.42 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHhhCCcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCCeEEEE
Q 013661 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAV 71 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~I~g~~e~sv 71 (438)
.++|.+|+.++++++|||+||||.... +|+ ||.+++|++|+.++++.+... ...++||+|+++++|+.+
T Consensus 24 ~~~s~eea~~aa~~lG~PvVvKa~~~~-ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~v 102 (397)
T 3ufx_B 24 VAYTPEEAKRIAEEFGKRVVIKAQVHV-GGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYA 102 (397)
T ss_dssp EESSHHHHHHHHHHHTSCEEEEECCSS-SCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCCEEEEEcccc-CCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEE
Confidence 367899999999999999999997632 444 999999999999999887532 246999999996699999
Q ss_pred EEEEcCC
Q 013661 72 IVVRGRD 78 (438)
Q Consensus 72 ~~~~d~~ 78 (438)
.+.+|..
T Consensus 103 gv~~D~~ 109 (397)
T 3ufx_B 103 GLILDRA 109 (397)
T ss_dssp EEEEETT
T ss_pred EEEecCC
Confidence 9999875
No 90
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.12 E-value=2.1e-05 Score=77.74 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=85.4
Q ss_pred CCcEEEEecCCCCCCcCeEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-------CCe--EEEEEEEEcCCCeEEEEe--
Q 013661 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-------FVK--ELAVIVVRGRDKSILCYP-- 85 (438)
Q Consensus 17 gyPvvvKP~~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~I~-------g~~--e~sv~~~~d~~G~~~~~~-- 85 (438)
+.+.|+||..++ .|+|+.++++.+++.+.++.. . ..++||+||+ +++ ++.+-++....-.++.|.
T Consensus 147 ~~~wI~KP~~~s-rG~GI~l~~~~~~i~~~~~~~-~--~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy~y~~g 222 (380)
T 3tig_A 147 GNVWIAKSSSGA-KGEGILISSDATELLDFIDNQ-G--QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYREG 222 (380)
T ss_dssp CCCEEEEESCC-----CCBCCSCSHHHHHHHHHH-T--SCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEEECSCC
T ss_pred CCeEEEeCCccC-CCCCEEEeCCHHHHHHHHhcc-C--CcEEEEecccCceeecCCCceeEEEEEEEEcCCCEEEEEcCC
Confidence 588999998765 899999999999998876542 2 3499999996 333 555555543321222111
Q ss_pred -----ee-----------eeEEecC---eEEEEEe---------------------CCCCCHHHHHHHHHHHHHHHHh--
Q 013661 86 -----VV-----------ETIHKEN---ICHIVKA---------------------PAAVPWKISELATDVAHKAVSS-- 123 (438)
Q Consensus 86 -----~~-----------e~~~~~g---~~~~~~~---------------------p~~l~~~~~~~i~~~a~~i~~~-- 123 (438)
.. .|+.... .....+. .....+.+..+|++++.+.+.+
T Consensus 223 ~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~ 302 (380)
T 3tig_A 223 VLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLE 302 (380)
T ss_dssp EEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 0000000 0001134566777776665554
Q ss_pred --c-----Cc--ceEEEEEEEEeCCCcEEEEEEcCCCCCCCCceeeeccCcHHHHHHHHHhC
Q 013661 124 --L-----EG--AGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVG 176 (438)
Q Consensus 124 --l-----g~--~G~~~ve~~~~~~g~~~viEiNpR~~~sg~~~~~~~~~~~~~~~~~~~~G 176 (438)
+ .. -.++++||++|++..+|+||||..|+-... .-.++++..++.+.+
T Consensus 303 ~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~-----~i~~l~~~~~~iavd 359 (380)
T 3tig_A 303 PAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQK-----LYAELCKGIVDLAIS 359 (380)
T ss_dssp HHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTT-----THHHHHHHHHHHTTT
T ss_pred HHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHH-----hHHHHHHHHHHHhcc
Confidence 1 12 268999999999999999999999984211 123466666666554
No 91
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.75 E-value=0.0045 Score=62.18 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhhC-CcEEEEecCCCCCC----cCeEEeCCHHHHHHHHHHhcCC----------CCcEEEeeccCC--C
Q 013661 4 NDLESARRAGKQFG-YPLMVKSKRLAYDG----RGNAVAKSEEELSSAITALGGF----------DRGLYVEKWAPF--V 66 (438)
Q Consensus 4 ~s~ee~~~~~~~ig-yPvvvKP~~~g~gg----~Gv~~v~~~~el~~~~~~~~~~----------~~~~lvEe~I~g--~ 66 (438)
+|.+|+.+.++++| ||+|+|+.... +| -||.+..|++|+++++..+... -..++||+.++. +
T Consensus 38 ~~~~eA~~~a~~lg~~pvVvKaqv~~-ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~ 116 (425)
T 3mwd_A 38 TDWARLLQDHPWLLSQNLVVKPDQLI-KRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA 116 (425)
T ss_dssp CCHHHHHHHCGGGGTSCEEEEECSSC-SCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEecccc-CCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCC
Confidence 57799999999999 99999995531 23 3899999999999988765321 135999999974 4
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 013661 67 KELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 67 ~e~sv~~~~d~~G~~~~~~ 85 (438)
+|+-+-+..|..|.++.++
T Consensus 117 ~E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 117 EEFYVCIYATREGDYVLFH 135 (425)
T ss_dssp GEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEecCCCCEEEEE
Confidence 8999999999887655554
No 92
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.78 E-value=0.018 Score=62.30 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhhC-CcEEEEecCCCCCCc----CeEEeCCHHHHHHHHHHhcCC----------CCcEEEeeccCC--C
Q 013661 4 NDLESARRAGKQFG-YPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF----------DRGLYVEKWAPF--V 66 (438)
Q Consensus 4 ~s~ee~~~~~~~ig-yPvvvKP~~~g~gg~----Gv~~v~~~~el~~~~~~~~~~----------~~~~lvEe~I~g--~ 66 (438)
++.+|+.++++.+| ||+|||+.... ||| ||.+..|++|+++++.++... -..++||++++. +
T Consensus 38 ~~~~eA~~aa~~lg~~pvVvKaQv~~-GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~ 116 (829)
T 3pff_A 38 TDWARLLQDHPWLLSQNLVVKPDQLI-KRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA 116 (829)
T ss_dssp CCHHHHHHHCTHHHHSCEEEEECSSC-SCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEecccc-cCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCc
Confidence 46788999999998 99999996542 444 789999999999988765321 145899999974 4
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 013661 67 KELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 67 ~e~sv~~~~d~~G~~~~~~ 85 (438)
+|+-+-+..|..|.++.+.
T Consensus 117 ~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 117 EEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp GEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEecCCCCEEEEE
Confidence 8999999999887665554
No 93
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=94.36 E-value=0.03 Score=55.59 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=61.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.||++....+.....+.+.|++ |+++.......+-+.+.+.+..+.+++.+++++|++.|++. .+...++-....
T Consensus 53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~~ 131 (387)
T 3uhj_A 53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGA 131 (387)
T ss_dssp SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcCC
Confidence 4567888776655567778888999 98874444556777777777777788889999999988764 777777777889
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.+|+.
T Consensus 132 p~i~IPTT 139 (387)
T 3uhj_A 132 RIVIAPTI 139 (387)
T ss_dssp EEEECCSS
T ss_pred CEEEecCc
Confidence 99999995
No 94
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=93.43 E-value=0.04 Score=54.28 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=63.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++..........+.+.|+..|+++...+.+-+-+.+.+.+..+.+++.+++++|++.|++ -.+.+.++-....
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 111 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA 111 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 467788765544456777888888889887544444444444566677777888999999888764 4788888766789
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.|||.
T Consensus 112 p~i~IPTT 119 (370)
T 1jq5_A 112 YIVIVPTA 119 (370)
T ss_dssp EEEEEESS
T ss_pred CEEEeccc
Confidence 99999995
No 95
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=93.23 E-value=1.1 Score=39.73 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=76.6
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCC
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
+.+++++... ......+.+...+++.+++.. ..+.++..+..+++ +.|++|+|+-.| -...|...+..
T Consensus 4 ~~~I~~iapy---~~l~~~~~~i~~e~~~~i~i~----~~~l~~~v~~a~~~-~~~~dVIISRGg----ta~~lr~~~~i 71 (196)
T 2q5c_A 4 SLKIALISQN---ENLLNLFPKLALEKNFIPITK----TASLTRASKIAFGL-QDEVDAIISRGA----TSDYIKKSVSI 71 (196)
T ss_dssp CCEEEEEESC---HHHHHHHHHHHHHHTCEEEEE----ECCHHHHHHHHHHH-TTTCSEEEEEHH----HHHHHHTTCSS
T ss_pred CCcEEEEEcc---HHHHHHHHHHHhhhCCceEEE----ECCHHHHHHHHHHh-cCCCeEEEECCh----HHHHHHHhCCC
Confidence 3456566533 233333334445666655554 45566677777777 789998887654 34556667889
Q ss_pred ceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013661 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 350 pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~~~--------~~~~~~~l~~~~~ 414 (438)
|||.+|.++ +|=+.+|...-+... .++.|+-.|....+-.-.++|+.. ..+++..+++.+.
T Consensus 72 PVV~I~~s~--~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 72 PSISIKVTR--FDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp CEEEECCCH--HHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred CEEEEcCCH--hHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 999999862 222333333333322 467776667666666667777754 3356566665554
No 96
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=92.60 E-value=0.084 Score=51.62 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=65.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++....+....++.+.|++.|+++..-.-..+.+.+.+.+. +.+++.+.+++|++.|++ -.+.+.++-....
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~~ 113 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRKL 113 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHHhhcCC
Confidence 36778876655556678888889989988754321357777777777 777888899999887764 4788888877789
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.+||.
T Consensus 114 p~i~IPTT 121 (354)
T 3ce9_A 114 PFISVPTS 121 (354)
T ss_dssp CEEEEESC
T ss_pred CEEEecCc
Confidence 99999995
No 97
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=92.08 E-value=0.1 Score=52.87 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=62.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCCCc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 350 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 350 (438)
++.|+++..........+.+.|+..|+++...+.+-+-+-+.+.+..+.+++ +.+++|++.|++ -.+...++-....|
T Consensus 93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~giP 171 (450)
T 1ta9_A 93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMNLP 171 (450)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHHTTCC
T ss_pred EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcCCC
Confidence 6778876655445677888889999998753444445444556666666677 899999888765 47888888777899
Q ss_pred eEeccCC
Q 013661 351 VIGVPVR 357 (438)
Q Consensus 351 Vi~~p~~ 357 (438)
+|.|||.
T Consensus 172 ~I~IPTT 178 (450)
T 1ta9_A 172 SIICPTT 178 (450)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999995
No 98
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=91.83 E-value=0.16 Score=50.32 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=61.7
Q ss_pred CeEEEEEccCCCHH-HHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCC
Q 013661 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAART 347 (438)
Q Consensus 271 ~~v~ii~gs~sD~~-~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~ 347 (438)
.++.|+++...... ...++.+.|++.|+++.. .-...+-+.+.+.+..+.+++.+++++|++.|++. .+...++...
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVA 111 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 46777776532222 567888889999988632 22346788888888888888889999999887763 4455544332
Q ss_pred ------------------CCceEeccCC
Q 013661 348 ------------------PLPVIGVPVR 357 (438)
Q Consensus 348 ------------------~~pVi~~p~~ 357 (438)
..|+|.|||.
T Consensus 112 ~~~~~~~d~~~~~~~~~~~~p~i~IPTT 139 (383)
T 3ox4_A 112 TNGGEVKDYEGIDKSKKPALPLMSINTT 139 (383)
T ss_dssp HSCSSGGGGCEESCCSSCCSCEEEEECS
T ss_pred hCCCCHHHHhcccccccCCCCEEEEeCC
Confidence 7899999995
No 99
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=91.81 E-value=0.12 Score=51.10 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=61.7
Q ss_pred CeEEEEEccCCCHH---HHHHHHHHHHHcCCcEEEE-EecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC
Q 013661 271 PRIGIIMGSDSDLP---VMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA 345 (438)
Q Consensus 271 ~~v~ii~gs~sD~~---~~~~~~~~l~~~G~~~~~~-v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~ 345 (438)
.++.|+++....+. ...++.+.|++.|+++..- -...+-+.+.+.+..+.+++.+++++|++.|++. .+...++.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~ 113 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGI 113 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHH
Confidence 45667776655444 7888999999999876321 1235667777777888888889999999887653 55555543
Q ss_pred C------------------CCCceEeccCC
Q 013661 346 R------------------TPLPVIGVPVR 357 (438)
Q Consensus 346 ~------------------~~~pVi~~p~~ 357 (438)
. ...|+|.|||.
T Consensus 114 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 143 (387)
T 3bfj_A 114 AATHEGDLYQYAGIETLTNPLPPIVAVNTT 143 (387)
T ss_dssp HHHSSSCSGGGCBSSCCCSCCCCEEEEECS
T ss_pred HHhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 2 47899999995
No 100
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=91.78 E-value=0.3 Score=48.39 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCC---eEEEEecccc-Ccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.|+++.........++.+.|+..|+++..-+.. .+.+.+.+.+..+.+.+.++ +++|++.|++ -.+.+++
T Consensus 63 ~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~ 142 (390)
T 3okf_A 63 QKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFA 142 (390)
T ss_dssp CEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHH
Confidence 567788887776668888899999999987654433 34567777777777788888 5888887764 5788877
Q ss_pred c--CCCCCceEeccCC
Q 013661 344 A--ARTPLPVIGVPVR 357 (438)
Q Consensus 344 ~--~~~~~pVi~~p~~ 357 (438)
+ -....|+|.+|+.
T Consensus 143 Aa~~~rgip~I~IPTT 158 (390)
T 3okf_A 143 AACYQRGVDFIQIPTT 158 (390)
T ss_dssp HHHBTTCCEEEEEECS
T ss_pred HHHhcCCCCEEEeCCC
Confidence 5 4567899999995
No 101
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=91.26 E-value=0.26 Score=48.42 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=62.6
Q ss_pred CeEEEEEccCCCHH--HHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCC
Q 013661 271 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAAR 346 (438)
Q Consensus 271 ~~v~ii~gs~sD~~--~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~ 346 (438)
.++.|+++..+-.. ...++.+.|++.|+++.. .-...+.+.+.+.+..+.+++.+.+++|++.|++ -.+..+++..
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 46777876544333 678888899999987532 2234677788888888888888999999888765 3555555442
Q ss_pred ------------------CCCceEeccCC
Q 013661 347 ------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 ------------------~~~pVi~~p~~ 357 (438)
...|+|.+||.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 121 LKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp TTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 56899999995
No 102
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=91.25 E-value=0.073 Score=52.13 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=61.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++... .....++.+.|++.++.+...+ ..+.+.+.+.+..+.+++.+++++|++.|++. .+...++.....
T Consensus 35 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~v~~~v-~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~ 112 (353)
T 3hl0_A 35 SRALVLSTPQQ-KGDAEALASRLGRLAAGVFSEA-AMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTDA 112 (353)
T ss_dssp CCEEEECCGGG-HHHHHHHHHHHGGGEEEEECCC-CTTCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred CEEEEEecCch-hhHHHHHHHHHhhCCcEEecCc-CCCCcHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence 35667766543 4567778888887665443222 23556666777777778889999999888764 778888888899
Q ss_pred ceEeccCCC
Q 013661 350 PVIGVPVRA 358 (438)
Q Consensus 350 pVi~~p~~~ 358 (438)
|+|.||+..
T Consensus 113 p~i~IPTTa 121 (353)
T 3hl0_A 113 AQIVIPTTY 121 (353)
T ss_dssp EEEEEECSS
T ss_pred CEEEEeCCc
Confidence 999999953
No 103
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=91.19 E-value=0.21 Score=49.55 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=63.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHc------CCcEEEEEecC---CCChHHHHHhHhhhhhcC--C---eEEEEeccc-
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMF------SVPHEVRIVSA---HRTPDLMFSYASSAHERG--I---EIIIAGAGG- 335 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~------G~~~~~~v~s~---hr~~~~~~~~~~~~~~~g--~---~v~i~~ag~- 335 (438)
.++.|++...........+.+.|+.. |+.+...+... +.+.+.+.+..+.+.+.+ + +++|++.|+
T Consensus 37 ~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGs 116 (393)
T 1sg6_A 37 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV 116 (393)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcH
Confidence 46667775543333567777788777 88876444444 666777777777778888 8 899988776
Q ss_pred cCccccccc--CCCCCceEeccCC
Q 013661 336 AAHLPGMVA--ARTPLPVIGVPVR 357 (438)
Q Consensus 336 ~~~l~~~i~--~~~~~pVi~~p~~ 357 (438)
.-.+.++++ -....|+|.+||.
T Consensus 117 v~D~ak~~Aa~~~rgip~i~IPTT 140 (393)
T 1sg6_A 117 IGDLTGFVASTYMRGVRYVQVPTT 140 (393)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEECCc
Confidence 458888887 3567899999995
No 104
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=90.50 E-value=0.091 Score=51.55 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=60.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++... .....++.+.|+..++.+.-.+ ..|.+.+.+.+..+.+++.+++++|++.|++. .+...++.....
T Consensus 37 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~~f~~v-~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~~ 114 (358)
T 3jzd_A 37 KRALVLCTPNQ-QAEAERIADLLGPLSAGVYAGA-VMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIALETGM 114 (358)
T ss_dssp SCEEEECCGGG-HHHHHHHHHHHGGGEEEEECCC-CTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred CeEEEEeCCcH-HHHHHHHHHHhccCCEEEecCC-cCCCCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence 35667776543 4567777788877654333222 23556666777777778889999999888764 778888888899
Q ss_pred ceEeccCC
Q 013661 350 PVIGVPVR 357 (438)
Q Consensus 350 pVi~~p~~ 357 (438)
|+|.||+.
T Consensus 115 p~i~IPTT 122 (358)
T 3jzd_A 115 PIVAIPTT 122 (358)
T ss_dssp CEEEEECS
T ss_pred CEEEEeCC
Confidence 99999996
No 105
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=88.78 E-value=0.42 Score=47.59 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=58.7
Q ss_pred CeEEEEEccCCCHH--HHHHHHHHHHHcCCcEEEEEe--cCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC
Q 013661 271 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA 345 (438)
Q Consensus 271 ~~v~ii~gs~sD~~--~~~~~~~~l~~~G~~~~~~v~--s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~ 345 (438)
.++.||++..+-.. ....+.+.|++.|+.+.. +. ..+-+.+.+.+..+.+++.+++++|++.|++. .+..+++.
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~-f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~ 122 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVE-VSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAA 122 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEE-ECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEE-ecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHH
Confidence 45667775332222 578888889988987642 22 23556667777777788889999999887653 45555543
Q ss_pred C------------------CCCceEeccCC
Q 013661 346 R------------------TPLPVIGVPVR 357 (438)
Q Consensus 346 ~------------------~~~pVi~~p~~ 357 (438)
. ...|+|.|||.
T Consensus 123 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 152 (407)
T 1vlj_A 123 GALYEGDIWDAFIGKYQIEKALPIFDVLTI 152 (407)
T ss_dssp HTTCSSCGGGGGGTSCCCCCCCCEEEEECS
T ss_pred HHhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 2 57899999995
No 106
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=88.60 E-value=0.19 Score=49.62 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=59.0
Q ss_pred CeEEEEEccCCCH-HHHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC--
Q 013661 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~ii~gs~sD~-~~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 345 (438)
.++.|+++..... ....++.+.|++.|+++.. .-...+-+.+.+.+..+.+++.+++++|++.|++. .+..+++.
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 3566776543322 2677888888888987642 11235667777777888888889999999887653 45555443
Q ss_pred ------------------CCCCceEeccCC
Q 013661 346 ------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ------------------~~~~pVi~~p~~ 357 (438)
....|+|.|||.
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 141 (386)
T 1rrm_A 112 NNPEFADVRSLEGLSPTNKPSVPILAIPTT 141 (386)
T ss_dssp HCGGGTTSGGGSEECCCCSCCSCEEEEECS
T ss_pred hCCCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 236899999995
No 107
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=87.09 E-value=13 Score=33.58 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh-hhcCCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChhh
Q 013661 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA-HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDS 366 (438)
Q Consensus 288 ~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~-~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~ 366 (438)
.+.+...+++...+..+. ..+.++..+..++. .+.|++|+|+-.|. ...|...+..|||.+|.+ |+|
T Consensus 27 ~~~~i~~e~~~~~~I~vi--~~~le~av~~a~~~~~~~~~dVIISRGgt----a~~Lr~~~~iPVV~I~vs-----~~D- 94 (225)
T 2pju_A 27 LFRDISLEFDHLANITPI--QLGFEKAVTYIRKKLANERCDAIIAAGSN----GAYLKSRLSVPVILIKPS-----GYD- 94 (225)
T ss_dssp HHHHHHTTTTTTCEEEEE--CCCHHHHHHHHHHHTTTSCCSEEEEEHHH----HHHHHTTCSSCEEEECCC-----HHH-
T ss_pred HHHHHHHhhCCCceEEEe--cCcHHHHHHHHHHHHhcCCCeEEEeCChH----HHHHHhhCCCCEEEecCC-----HHH-
Confidence 334444566666666653 35555556555553 34579988876543 455666788999999986 444
Q ss_pred HHHhhhCCC--CCceEEEEeCCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013661 367 LLSIVQMPR--GVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 367 l~s~~~~~~--g~p~~tv~~~~~~~Aa~~a~~il~~~--------~~~~~~~l~~~~~ 414 (438)
+++.++... +-.++.|+-.+....+-.-.++|++. ..++...+++.+.
T Consensus 95 il~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~ 152 (225)
T 2pju_A 95 VLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA 152 (225)
T ss_dssp HHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 444444422 22467777667767666667777765 3345555554444
No 108
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=85.86 E-value=1.6 Score=42.65 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=61.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcC---CeEEEEeccc-cCcccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGG-AAHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g---~~v~i~~ag~-~~~l~~~i 343 (438)
.++.|++...........+.+.|+.. +.+...+.. .+.+.+.+.+..+.+.+.| .+++|+..|+ .-.+.+++
T Consensus 35 ~k~liVtd~~v~~~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~ 113 (368)
T 2gru_A 35 DQYIMISDSGVPDSIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVA 113 (368)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHH
Confidence 46778887766666778888888776 666543332 3556666666666667777 5788888765 45888888
Q ss_pred cC--CCCCceEeccCC
Q 013661 344 AA--RTPLPVIGVPVR 357 (438)
Q Consensus 344 ~~--~~~~pVi~~p~~ 357 (438)
++ ....|+|.+||.
T Consensus 114 Aa~~~rgip~i~IPTT 129 (368)
T 2gru_A 114 AGMMFRGIALIHVPTT 129 (368)
T ss_dssp HHHBTTCCEEEEEECS
T ss_pred HHHhcCCCCEEEECCc
Confidence 73 557899999994
No 109
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=85.84 E-value=0.72 Score=46.68 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHhhCCcEEEEecCCCCCCcCeEE--eCCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013661 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAV--AKSEEELSSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvvvKP~~~g~gg~Gv~~--v~~~~el~~~~~~~~~~~~~~lvEe~I~g 65 (438)
+.+.++...+.+++. -+|+||..+. +|.|+.+ --+.++.++..+.+...+..+++|++++-
T Consensus 349 c~~~~~~~~vl~~l~-~lViKp~~g~-gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~l 411 (474)
T 3n6x_A 349 LSKADDLKYVLDNLA-ELVVKEVQGS-GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLAL 411 (474)
T ss_dssp TTSHHHHHHHHHSGG-GEEEEECCCE------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCC
T ss_pred cCCHHHHHHHHhchh-heEEEecCCC-CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCC
Confidence 456777777777766 6999998764 8999987 45788888887777666677999999985
No 110
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=85.59 E-value=0.76 Score=45.07 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=60.5
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcC---CeEEEEecccc-Ccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~i 343 (438)
.++.|+++.... +...++.+.|+..|+++...+.. .+.+.+.+.+..+.+.+.| .+++|++.|++ -.+.+++
T Consensus 44 ~rvlIVtd~~v~-~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~ 122 (368)
T 3qbe_A 44 HKVAVVHQPGLA-ETAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFA 122 (368)
T ss_dssp SEEEEEECGGGH-HHHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECccHH-HHHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 466788776554 35788888999999987655432 3445566666666666555 47888888764 5788888
Q ss_pred c--CCCCCceEeccCC
Q 013661 344 A--ARTPLPVIGVPVR 357 (438)
Q Consensus 344 ~--~~~~~pVi~~p~~ 357 (438)
+ -....|+|.+|+.
T Consensus 123 Aa~~~rgip~i~IPTT 138 (368)
T 3qbe_A 123 AATWLRGVSIVHLPTT 138 (368)
T ss_dssp HHHGGGCCEEEEEECS
T ss_pred HHHhccCCcEEEECCC
Confidence 7 3467899999995
No 111
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=85.43 E-value=0.59 Score=45.52 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=54.1
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec---CCCChHHHHHhHhhhhhcCC---eEEEEecccc-Cccccccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s---~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~ 344 (438)
++.|++...........+.+.| ..| +++..+.+ .+.+.+.+.+..+.+.+.++ +++|++.|++ -.+.++++
T Consensus 33 ~~liVtd~~~~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA 110 (354)
T 1xah_A 33 QSFLLIDEYVNQYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVA 110 (354)
T ss_dssp CEEEEEEHHHHHHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHH
Confidence 4557765433333556666677 667 65544332 35577777777777888888 7999887764 57888887
Q ss_pred --CCCCCceEeccCCC
Q 013661 345 --ARTPLPVIGVPVRA 358 (438)
Q Consensus 345 --~~~~~pVi~~p~~~ 358 (438)
-....|+|.+||..
T Consensus 111 ~~~~rgip~i~IPTT~ 126 (354)
T 1xah_A 111 ATLLRGVHFIQVPTTI 126 (354)
T ss_dssp HHBTTCCEEEEEECST
T ss_pred HHhccCCCEEEECCcc
Confidence 45778999999953
No 112
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=82.77 E-value=0.75 Score=45.72 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=53.5
Q ss_pred CeEEEEEccCCCHH--HHHHHHHHHHHcCCcEEEEEe--cCCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccC
Q 013661 271 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA 345 (438)
Q Consensus 271 ~~v~ii~gs~sD~~--~~~~~~~~l~~~G~~~~~~v~--s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~ 345 (438)
.++.||++..+-.. ...++.+.|+ |+++. .+- ..+.+.+.+.+..+.+++.+++++|++.|++. .+...++.
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~ 127 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVL-EFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAA 127 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEE-EECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC--CCEEE-EeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 45667765432222 5666666665 77643 221 23556677777777778889999999887653 45554443
Q ss_pred C---------------------CCCceEeccCC
Q 013661 346 R---------------------TPLPVIGVPVR 357 (438)
Q Consensus 346 ~---------------------~~~pVi~~p~~ 357 (438)
. ...|+|.|||.
T Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTT 160 (408)
T 1oj7_A 128 AANYPENIDPWHILQTGGKEIKSAIPMGCVLTL 160 (408)
T ss_dssp HTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESS
T ss_pred HHhCCCCCCHHHHhccccCcCCCCCCEEEEeCC
Confidence 1 45899999995
No 113
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=81.76 E-value=1.1 Score=43.59 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=54.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEe--cCCCChHHHHHhHhhhhhcCC---eEEEEeccc-cCccccccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAHERGI---EIIIAGAGG-AAHLPGMVA 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~--s~hr~~~~~~~~~~~~~~~g~---~v~i~~ag~-~~~l~~~i~ 344 (438)
.++.|+++..... ...++.+.|+ .++. ..+- -.+.+.+.+.+..+.+.+.++ +++|++.|+ .-.+.++++
T Consensus 29 ~kvliVtd~~v~~-~~~~v~~~L~-~~~~--~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A 104 (348)
T 1ujn_A 29 GPAALLFDRRVEG-FAQEVAKALG-VRHL--LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVA 104 (348)
T ss_dssp SCEEEEEEGGGHH-HHHHHHHHHT-CCCE--EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHH
T ss_pred CEEEEEECCcHHH-HHHHHHHHhc-cCeE--EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHH
Confidence 3566777665444 6677777776 4443 2222 234556666777666666676 688888765 458888887
Q ss_pred C--CCCCceEeccCC
Q 013661 345 A--RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~--~~~~pVi~~p~~ 357 (438)
. ....|+|.+||.
T Consensus 105 ~~~~rgip~i~IPTT 119 (348)
T 1ujn_A 105 ATYLRGVAYLAFPTT 119 (348)
T ss_dssp HHBTTCCEEEEEECS
T ss_pred HHhccCCCEEEecCc
Confidence 3 567899999995
No 114
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.11 E-value=0.31 Score=47.97 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred CeEEEEEccCCCHHH-HHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccCCCC
Q 013661 271 PRIGIIMGSDSDLPV-MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~-~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~ 348 (438)
.++.|+++....... ...+.+.|++.| +...+.+-+-+.+.+.+..+.+++ +.+++|++.|++ -.+...++-...
T Consensus 42 ~~~liVtd~~~~~~~~~~~v~~~L~~~g--~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~ 118 (376)
T 1kq3_A 42 ERAFVVIDDFVDKNVLGENFFSSFTKVR--VNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK 118 (376)
T ss_dssp SEEEEEECHHHHHHTTCTTGGGGCSSSE--EEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred CeEEEEECccHHhhccHHHHHHHHHHcC--CeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 456677643211111 233344444455 333443434444455666666666 889999887764 478888877778
Q ss_pred CceEeccCC
Q 013661 349 LPVIGVPVR 357 (438)
Q Consensus 349 ~pVi~~p~~ 357 (438)
.|+|.|||.
T Consensus 119 ~p~i~IPTT 127 (376)
T 1kq3_A 119 KPVVIVPTI 127 (376)
T ss_dssp CCEEEEESS
T ss_pred CCEEEecCc
Confidence 999999995
No 115
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=74.78 E-value=0.65 Score=45.05 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=37.3
Q ss_pred CCChHHHHHhHhhhhhcCC---eEEEEecccc-Cccccccc--CCCCCceEeccCC
Q 013661 308 HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA--ARTPLPVIGVPVR 357 (438)
Q Consensus 308 hr~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~--~~~~~pVi~~p~~ 357 (438)
+.+.+.+.+..+.+.+.++ +++|++.|++ -.+.++++ -....|+|.+|+.
T Consensus 65 ~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~rgip~i~IPTT 120 (343)
T 3clh_A 65 YKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTT 120 (343)
T ss_dssp GCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEeCCc
Confidence 4466666677777777788 8888877654 57888877 5667899999986
No 116
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=72.43 E-value=11 Score=34.71 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.+.++++.+.++..|.++..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 38 ~~~~~~~~~~~~~i~~~g~~~~~~~~D-vt~~~~v~~~~~~~~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 38 ELLEDRLNQIVQELRGMGKEVLGVKAD-VSKKKDVEEFVRRTFETYSRIDVLCNNAGI 94 (254)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 456778888888888888776544433 3456777776665432 357788887764
No 117
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=71.70 E-value=7.2 Score=32.06 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=47.1
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|+..++...+.++++.+.|+..|+.+++... |+-+++-.-+++++..+++.++++.
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~---r~~e~Lg~kIR~a~~~kvPy~lVVG 68 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFL---NTEVSLSQALEDVSRGGSPFAIVIT 68 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEEC---TTSSCHHHHHHHHHHHTCSEEEEEC
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecC---CCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 5778888999999999999999999999999832 2234477777788888999776654
No 118
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=70.26 E-value=2.4 Score=41.33 Aligned_cols=52 Identities=21% Similarity=0.419 Sum_probs=41.8
Q ss_pred CCCChHHHHHhHhhhhhcCCeEEEEeccccC-cccccccCCCCCceEeccCCC
Q 013661 307 AHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 307 ~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~pVi~~p~~~ 358 (438)
.+-+.+.+.+..+.+++.+++++|++.|++. .+...++.....|+|.||+..
T Consensus 70 ~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~P~i~IPTTa 122 (364)
T 3iv7_A 70 MHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTALPIVAIPTTY 122 (364)
T ss_dssp TTCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHCCCEEEEECSS
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccCCCEEEEcCCc
Confidence 4666777777777788889999999888764 677778778889999999953
No 119
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=67.04 E-value=2.9 Score=40.99 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=50.8
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcC---CeEEEEeccccC-cccccccCC
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERG---IEIIIAGAGGAA-HLPGMVAAR 346 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g---~~v~i~~ag~~~-~l~~~i~~~ 346 (438)
++.||++..-.. ..+.+.|+..|+.+.. .-...+-+.+.+.+..+.+++.+ ++++|++.|++. .+...++..
T Consensus 55 ~~liVtd~~~~~---~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 55 FVVFLVDDVHQH---KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp CEEEEEEGGGTT---SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred eEEEEECchhhh---hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 455666432211 1355666666877632 11234555566666777677777 899999888763 445544432
Q ss_pred C------------------CCceEeccCC
Q 013661 347 T------------------PLPVIGVPVR 357 (438)
Q Consensus 347 ~------------------~~pVi~~p~~ 357 (438)
. ..|+|.||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 160 (375)
T 3rf7_A 132 LTNPGSSSEYQGWDLIKNPAVHHIGIPTV 160 (375)
T ss_dssp TSSCSCGGGGCEESCCCSCCCCEEEEESS
T ss_pred HhCCCCHHHhhccccccCCCCCEEEEcCC
Confidence 2 5899999995
No 120
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=65.68 E-value=2.8 Score=42.99 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=40.2
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+|.+ +||.++ |..+.++++.|.++||++.+| .+ |++++ ++.|++|..+.
T Consensus 5 ~G~a-LISV~D--K~~iv~lAk~L~~lGf~I~AT----gG----TAk~L---~e~GI~v~~V~ 53 (593)
T 1g8m_A 5 QQLA-LLSVSE--KAGLVEFARSLNALGLGLIAS----GG----TATAL---RDAGLPVRDVS 53 (593)
T ss_dssp CCEE-EEEESC--CTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEEHH
T ss_pred CCEE-EEEEeC--cHhHHHHHHHHHHCCCEEEEc----hH----HHHHH---HHCCCeEEEee
Confidence 4554 777665 899999999999999999998 56 88888 66799988764
No 121
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=65.36 E-value=81 Score=28.65 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=49.9
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc-cCc-cccccc
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAH-LPGMVA 344 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~-l~~~i~ 344 (438)
...|+++....++ ...+..+.+.+++.|+.+... ..+..++.-.++++.+..++++-+|..... ... ....+.
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~ 92 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLG--QIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVL 92 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEE--ECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHh
Confidence 3567777655443 345566667888899887654 456777777778888888889966654422 221 222233
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
. ..|||.+
T Consensus 93 ~--~iPvV~i 100 (303)
T 3kke_A 93 E--GVPAVTI 100 (303)
T ss_dssp T--TSCEEEE
T ss_pred C--CCCEEEE
Confidence 2 6788766
No 122
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=65.15 E-value=74 Score=29.60 Aligned_cols=86 Identities=13% Similarity=0.010 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++..+|..+++.++.+.+. ...+...|+++..+.++ ...+..+.+.+++.|+.+.+ ...+..++...+
T Consensus 38 s~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~ 115 (344)
T 3kjx_A 38 SDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVV--GVTDYLPEKEEK 115 (344)
T ss_dssp CHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEE--EECTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHH
Confidence 45667777777666554310 01123468888755443 34455566777888887654 356778888788
Q ss_pred hHhhhhhcCCeEEEEec
Q 013661 317 YASSAHERGIEIIIAGA 333 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~a 333 (438)
+++.+..++++-+|...
T Consensus 116 ~i~~l~~~~vdGiIi~~ 132 (344)
T 3kjx_A 116 VLYEMLSWRPSGVIIAG 132 (344)
T ss_dssp HHHHHHTTCCSEEEEEC
T ss_pred HHHHHHhCCCCEEEEEC
Confidence 88887788888666543
No 123
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.80 E-value=44 Score=25.44 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~ 323 (438)
.+..|.....++...+.+ ..+ +...-.|++.++++.+..+.+|..+-.-+. ...-.++.+|.++.+.
T Consensus 33 rspqelkdsieelvkkyn---------ati--vvvvvddkewaekairfvkslgaqvliiiy--dqdqnrleefsrevrr 99 (134)
T 2l69_A 33 RSPQELKDSIEELVKKYN---------ATI--VVVVVDDKEWAEKAIRFVKSLGAQVLIIIY--DQDQNRLEEFSREVRR 99 (134)
T ss_dssp CSHHHHHHHHHHHTTCCC---------CEE--EEEECSSHHHHHHHHHHHHHHCCCCEEEEE--CSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhC---------CeE--EEEEEccHHHHHHHHHHHHhcCCeEEEEEE--eCchhHHHHHHHHHHh
Confidence 455566665555554432 222 222345788888888888888888654443 4556678888888888
Q ss_pred cCCeEEEE
Q 013661 324 RGIEIIIA 331 (438)
Q Consensus 324 ~g~~v~i~ 331 (438)
+|++|--+
T Consensus 100 rgfevrtv 107 (134)
T 2l69_A 100 RGFEVRTV 107 (134)
T ss_dssp TTCCEEEE
T ss_pred cCceEEEe
Confidence 88887654
No 124
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=63.95 E-value=25 Score=28.81 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--------CCCCCceEeccC
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--------ARTPLPVIGVPV 356 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--------~~~~~pVi~~p~ 356 (438)
.+.++.+.+...|++++..+. ++.|. ..+++.+++.+++.++.++-+...+..++- .+...||+-||.
T Consensus 84 ~l~~~~~~~~~~g~~~~~~v~--~G~~~--~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~ 159 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDIIV--VGIPH--EEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE--EECHH--HHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHHHHcCCceEEEEc--CCCHH--HHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeC
Confidence 455556667778998876654 35553 334555577789988877643334433322 234566666654
No 125
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.31 E-value=47 Score=25.27 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~ 323 (438)
+|.+|....+...+.+-+ -.++.||+ .|+..+.++.....++|+++..-.- ...-.++.+|.+..+.
T Consensus 33 ndsdelkkemkklaeekn--------fekiliis---ndkqllkemlelisklgykvflllq--dqdeneleefkrkies 99 (134)
T 2lci_A 33 NDSDELKKEMKKLAEEKN--------FEKILIIS---NDKQLLKEMLELISKLGYKVFLLLQ--DQDENELEEFKRKIES 99 (134)
T ss_dssp CSHHHHHHHHHHHHHCCS--------CCCEEEEE---SCHHHHHHHHHHHHHHTCCEEEEEE--CSCHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhhcC--------cceEEEEc---CcHHHHHHHHHHHHHhCceeEEEee--cCchhHHHHHHHHHHh
Confidence 566777666666665432 23455664 7899999999999999999876543 4556778899999999
Q ss_pred cCCeEEEE
Q 013661 324 RGIEIIIA 331 (438)
Q Consensus 324 ~g~~v~i~ 331 (438)
.|+.|--+
T Consensus 100 qgyevrkv 107 (134)
T 2lci_A 100 QGYEVRKV 107 (134)
T ss_dssp TTCEEEEE
T ss_pred CCeeeeec
Confidence 99988755
No 126
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=60.84 E-value=15 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhc--CCeEEEEeccc
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
+.+.+.++++.+.+.+.|.+...-.+. -..++.+.+++++..+. +++++|-.||.
T Consensus 40 ~~~~~~~~~~~~~l~~~g~~~~~~~~D-v~~~~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 40 DIRATLLAESVDTLTRKGYDAHGVAFD-VTDELAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCCC-TTCHHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 456677777777777777664433222 34566666666655332 46677777763
No 127
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=60.40 E-value=4.2 Score=41.17 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=38.9
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 274 GIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 274 ~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++||. +||..+.+.++.|.++||++.+| .+ |++++ ++.|++|..+..
T Consensus 27 aLISV--~DK~glv~~Ak~L~~lGfeI~AT----gG----Tak~L---~e~GI~v~~V~k 73 (534)
T 4ehi_A 27 ALLSV--SDKEGIVEFGKELENLGFEILST----GG----TFKLL---KENGIKVIEVSD 73 (534)
T ss_dssp EEEEE--SSCTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEECBC
T ss_pred EEEEE--cccccHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHCCCceeehhh
Confidence 47766 67899999999999999999988 56 88888 567999876543
No 128
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=59.63 E-value=34 Score=27.02 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
..+.++.+.+...|++++..+. ++.|. ..+++.++ +++.++.++-+...+..++
T Consensus 66 ~~l~~~~~~~~~~g~~~~~~v~--~g~~~--~~I~~~a~--~~dliV~G~~~~~~~~~~~ 119 (138)
T 3idf_A 66 LLTQKFSTFFTEKGINPFVVIK--EGEPV--EMVLEEAK--DYNLLIIGSSENSFLNKIF 119 (138)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEE--ESCHH--HHHHHHHT--TCSEEEEECCTTSTTSSCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEe--cCChH--HHHHHHHh--cCCEEEEeCCCcchHHHHh
Confidence 3445556666778888876654 34553 33444334 7888887765444555555
No 129
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=58.66 E-value=68 Score=29.72 Aligned_cols=62 Identities=6% Similarity=0.017 Sum_probs=41.4
Q ss_pred CCeEEEEEcc--CCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 270 LPRIGIIMGS--DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~ii~gs--~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
...++++... .++ ...+..+.+.+++.|+.+... ..+..++.-.++++.+..++++-+|...
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA--DGKHSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEE--ECTTSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 3567777654 232 234555667778899876544 4677788777778777788898666544
No 130
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=58.29 E-value=4.3 Score=41.09 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=39.3
Q ss_pred EEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 273 v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.++||. +||..+.+.++.|.++||++.+| .+ |++++ ++.|++|..+..
T Consensus 12 ~aLISV--sDK~glvelAk~L~~lGfeI~AT----gG----Tak~L---~e~GI~v~~V~~ 59 (523)
T 3zzm_A 12 RALISV--YDKTGLVDLAQGLSAAGVEIIST----GS----TAKTI---ADTGIPVTPVEQ 59 (523)
T ss_dssp EEEEEE--SSCTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HTTTCCCEEHHH
T ss_pred EEEEEE--eccccHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHcCCceeeccc
Confidence 347776 67899999999999999999988 66 88888 567999876533
No 131
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=58.04 E-value=42 Score=30.64 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=53.2
Q ss_pred eEEEEEccCC--CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc------
Q 013661 272 RIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV------ 343 (438)
Q Consensus 272 ~v~ii~gs~s--D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i------ 343 (438)
.+-++...+. ....++++.+.|+..|++++..+. ++.|. ..+++.+++.++++++.++-+...+..++
T Consensus 200 ~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~ 275 (294)
T 3loq_A 200 ELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIE--SGTPH--KAILAKREEINATTIFMGSRGAGSVMTMILGSTSE 275 (294)
T ss_dssp EEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEE--CSCHH--HHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHH
T ss_pred EEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEe--cCCHH--HHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHH
Confidence 4445544332 567888888999999999877765 44543 33455557778998888775444444432
Q ss_pred --cCCCCCceEeccCC
Q 013661 344 --AARTPLPVIGVPVR 357 (438)
Q Consensus 344 --~~~~~~pVi~~p~~ 357 (438)
......||+-+|.+
T Consensus 276 ~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 276 SVIRRSPVPVFVCKRG 291 (294)
T ss_dssp HHHHHCSSCEEEECSC
T ss_pred HHHhcCCCCEEEECCC
Confidence 23566788888764
No 132
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=57.63 E-value=1.1e+02 Score=27.44 Aligned_cols=83 Identities=7% Similarity=0.031 Sum_probs=50.1
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA-- 344 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~-- 344 (438)
...|+++..+.++ ......+.+.++++|+.+... ..+..++.-.+.++.+.+.+++.+|........+...+.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVA--TSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE--ECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 4567787765444 223444556777888876544 557778777778888778889977665433322222221
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
.....|||.+
T Consensus 86 ~~~~iPvV~~ 95 (293)
T 3l6u_A 86 KKAGIPVFAI 95 (293)
T ss_dssp HHTTCCEEEE
T ss_pred HHcCCCEEEe
Confidence 1235677776
No 133
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=56.77 E-value=60 Score=30.08 Aligned_cols=85 Identities=9% Similarity=-0.011 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCCc----cccCCCCeEEEEEcc-CCC---HHHHHHHHHHHHHcCCcEEEEEecCC--CChHHHHH
Q 013661 247 GLVESRLNSLLKEDSSDC----QFKTVLPRIGIIMGS-DSD---LPVMKDAAKILTMFSVPHEVRIVSAH--RTPDLMFS 316 (438)
Q Consensus 247 ~eA~~ka~~a~~~i~~~~----~~~~~~~~v~ii~gs-~sD---~~~~~~~~~~l~~~G~~~~~~v~s~h--r~~~~~~~ 316 (438)
++..+|..+++.++.+.+ ....+...|+++..+ .++ ...+..+.+.+++.|+.+.+.+...+ ..+++-.+
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 95 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSL 95 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHH
Confidence 466777777777665532 011122467777654 222 23445556777889998877654445 57776667
Q ss_pred hHhhhhhcCCeEEEE
Q 013661 317 YASSAHERGIEIIIA 331 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~ 331 (438)
+++.+..++++.+|.
T Consensus 96 ~i~~l~~~~vdgiIi 110 (342)
T 1jx6_A 96 SLMEALKSKSDYLIF 110 (342)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHhcCCCEEEE
Confidence 777777778997776
No 134
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=56.63 E-value=67 Score=27.48 Aligned_cols=85 Identities=9% Similarity=0.091 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhc-CCeEEEEeccccCcccccccCCCCCceEeccCCCCCCCChh
Q 013661 287 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLD 365 (438)
Q Consensus 287 ~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~-g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~ 365 (438)
.-+...|+++|+++....+- --+++.+.+.++++-++ +++++|+..|.+..--++... ....+++ ..+.|+.
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv-~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~e-al~~~~~-----~~l~G~~ 115 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLV-PDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVE-TIRKLFD-----REIEGFS 115 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEE-CSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHH-HHGGGCS-----EECHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHH-HHHHHhc-----ccCcchH
Confidence 34567889999986433221 34577777777665443 689888877655433333210 0001111 1123544
Q ss_pred hHHHhhhCCC---CCc
Q 013661 366 SLLSIVQMPR---GVP 378 (438)
Q Consensus 366 ~l~s~~~~~~---g~p 378 (438)
-+++.++|.+ |-|
T Consensus 116 ~~~~~v~~~p~~~G~p 131 (178)
T 2pjk_A 116 DVFRLVSFNDPEVKAA 131 (178)
T ss_dssp HHHHHHHHTSTTTGGG
T ss_pred HHhheeeccCCCCCCc
Confidence 4577788855 655
No 135
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=56.25 E-value=19 Score=28.86 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCC-cEEEEEecCCCChHHHHHhHh-hhhhcCCeEEEEeccccCccccc
Q 013661 284 PVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYAS-SAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~-~~~~~v~s~hr~~~~~~~~~~-~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
..+.++.+.+...|+ +++..+. ++.|. ..+++ .+++.+++.++.++.+...+..+
T Consensus 69 ~~l~~~~~~~~~~g~~~~~~~~~--~g~~~--~~I~~~~a~~~~~dliV~G~~~~~~~~~~ 125 (146)
T 3s3t_A 69 DAMRQRQQFVATTSAPNLKTEIS--YGIPK--HTIEDYAKQHPEIDLIVLGATGTNSPHRV 125 (146)
T ss_dssp HHHHHHHHHHTTSSCCCCEEEEE--EECHH--HHHHHHHHHSTTCCEEEEESCCSSCTTTC
T ss_pred HHHHHHHHHHHhcCCcceEEEEe--cCChH--HHHHHHHHhhcCCCEEEECCCCCCCcceE
Confidence 345555666677788 7776654 34443 34555 55777899888776444444443
No 136
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=54.28 E-value=37 Score=30.98 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCC---cEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEecc
Q 013661 285 VMKDAAKILTMFSV---PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 285 ~~~~~~~~l~~~G~---~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p 355 (438)
..+.+.+.|.+.|+ .+.+.+...++.+++..++++.+.+++++.+|+....+ ...+.......|||-+-
T Consensus 19 i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~--~~~~~~~~~~iPvV~~~ 90 (295)
T 3lft_A 19 IYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPA--AQGLASATKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHHH--HHHHHHHCSSSCEEEES
T ss_pred HHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcHH--HHHHHHcCCCCCEEEEe
Confidence 34555677888999 87777778899999888888888888888777654211 11111123567888764
No 137
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=52.73 E-value=57 Score=23.47 Aligned_cols=26 Identities=8% Similarity=-0.096 Sum_probs=14.0
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCc
Q 013661 274 GIIMGSDSDLPVMKDAAKILTMFSVP 299 (438)
Q Consensus 274 ~ii~gs~sD~~~~~~~~~~l~~~G~~ 299 (438)
.|-.|+-++...++.....|...|++
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~~~g~~ 36 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAEAKGFD 36 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555554
No 138
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=51.95 E-value=1.1e+02 Score=26.21 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEcc--CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhh
Q 013661 243 GSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASS 320 (438)
Q Consensus 243 G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs--~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~ 320 (438)
+.+..+|+..+...+..... .....+|++++.+ ..|.....++++.+++.|+.+++--.+.....+.+..|.+.
T Consensus 83 ~t~l~~aL~~A~~~l~~~~~----~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~ 158 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKHREN----KIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESALQHFIDA 158 (192)
T ss_dssp CCCHHHHHHHHHHHHHTCSC----TTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccc----cCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHh
Confidence 56888999999888765321 1112344455443 23567788899999999999775444433222125566643
No 139
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=51.34 E-value=66 Score=29.91 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCCH---HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSDL---PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD~---~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
++..+|..+++.++.+.+. ...+...|+++.-..++- ..+..+.+.+++.|+.+.. ...+.+++...++
T Consensus 29 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~ 106 (340)
T 1qpz_A 29 EETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNNLEKQRAY 106 (340)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHH
Confidence 5566777777666554210 011235677887544331 2344555677788987654 3556777777777
Q ss_pred HhhhhhcCCeEEEEeccc-cCcccccccCCCCCceEec
Q 013661 318 ASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVi~~ 354 (438)
++.+..++++-+|..... ...+...+......|||.+
T Consensus 107 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~ 144 (340)
T 1qpz_A 107 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM 144 (340)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEE
T ss_pred HHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEE
Confidence 777777789866654322 2223333332245687765
No 140
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=51.30 E-value=27 Score=29.05 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCc-EEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc--------cCCCCCceEe
Q 013661 283 LPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIG 353 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~-~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~ 353 (438)
...+.++.+.+...|++ ++..+. .+.|. ..+++.+++.+++.++.++-+...+..++ ..+...||+-
T Consensus 80 ~~~l~~~~~~~~~~gv~~v~~~v~--~G~~~--~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 80 YEILHDAKERAHNAGAKNVEERPI--VGAPV--DALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEE--CSSHH--HHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEe--cCCHH--HHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEE
Confidence 35566677777888998 776654 45553 34555557778998887764333443332 2234577777
Q ss_pred ccCC
Q 013661 354 VPVR 357 (438)
Q Consensus 354 ~p~~ 357 (438)
||..
T Consensus 156 V~~~ 159 (163)
T 1tq8_A 156 VHTT 159 (163)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 7653
No 141
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=50.70 E-value=28 Score=29.03 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--------CCCCCceEeccC
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--------ARTPLPVIGVPV 356 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--------~~~~~pVi~~p~ 356 (438)
.++++.+.+...|++++..+. ++.|. ..+++.+++.+++.+|.++-+...+..++- .+...||+-||.
T Consensus 88 ~l~~~~~~~~~~g~~~~~~v~--~G~~~--~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~ 163 (175)
T 2gm3_A 88 LLEFFVNKCHEIGVGCEAWIK--TGDPK--DVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR 163 (175)
T ss_dssp HHHHHHHHHHHHTCEEEEEEE--ESCHH--HHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHHCCCceEEEEe--cCCHH--HHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcC
Confidence 445555566778988876654 35553 345555577789988776643334433322 234577777765
Q ss_pred C
Q 013661 357 R 357 (438)
Q Consensus 357 ~ 357 (438)
.
T Consensus 164 ~ 164 (175)
T 2gm3_A 164 N 164 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=50.44 E-value=33 Score=28.37 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCcEEE--EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc--------cCCCCCceEec
Q 013661 285 VMKDAAKILTMFSVPHEV--RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIGV 354 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~--~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~~ 354 (438)
.++++.+.+...|++++. .+. .+.|. ..+++.+++.+++.+|.++.+...+..++ ..+...||+-|
T Consensus 79 ~l~~~~~~~~~~g~~~~~~~~~~--~g~~~--~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 79 KLQEKAEEVKRAFRAKNVRTIIR--FGIPW--DEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEE--EECHH--HHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcCCceeeeeEEe--cCChH--HHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 344455556667888776 544 34553 33455557778998887764333443332 22456788888
Q ss_pred cCC
Q 013661 355 PVR 357 (438)
Q Consensus 355 p~~ 357 (438)
|..
T Consensus 155 ~~~ 157 (170)
T 2dum_A 155 KEV 157 (170)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 143
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.90 E-value=1.1e+02 Score=28.09 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccC--CCHHHHHHHHHHHHHcCCcEEEEEec-CCCChHHHHHhHh
Q 013661 243 GSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYAS 319 (438)
Q Consensus 243 G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~--sD~~~~~~~~~~l~~~G~~~~~~v~s-~hr~~~~~~~~~~ 319 (438)
+.+...++..|..++..... .....+++++++|+ .|...+.++++.+++.|+.+++--.+ -.-..+++..|..
T Consensus 84 ~T~l~~gL~~A~~aLk~~~~----k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~ 159 (268)
T 4b4t_W 84 KLHMATALQIAQLTLKHRQN----KVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIA 159 (268)
T ss_dssp CCCHHHHHHHHHHHHHTCSC----TTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccc----CCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHH
Confidence 35788899999988875432 11234566776664 47788999999999999987644333 2334556777776
Q ss_pred hhh
Q 013661 320 SAH 322 (438)
Q Consensus 320 ~~~ 322 (438)
...
T Consensus 160 ~~N 162 (268)
T 4b4t_W 160 AVN 162 (268)
T ss_dssp HHC
T ss_pred Hhc
Confidence 543
No 144
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=49.24 E-value=1.1e+02 Score=27.35 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=48.7
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA-- 344 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~-- 344 (438)
...|+++.-+.++ ...+..+.+.+++.|+.+... ..+.++++-.+.++.+...+++.+|............+.
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIAL--DAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--cCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 4567777665443 223455667778888766544 557777777777777777788876655422112222221
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
.....|||.+
T Consensus 83 ~~~~iPvV~~ 92 (291)
T 3l49_A 83 NDAGIPLFTV 92 (291)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCcEEEe
Confidence 1235677765
No 145
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=47.80 E-value=35 Score=29.61 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCeEEEEEccC------CCHHHHHHHHHHHHHcCCcEEE-EEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccc
Q 013661 270 LPRIGIIMGSD------SDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 270 ~~~v~ii~gs~------sD~~~~~~~~~~l~~~G~~~~~-~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
+++|+||+.++ .| ....-+...|+++|+++.. .++ .-+++.+.+-++++...+++++|+..|.+..--++
T Consensus 30 ~~rvaIistGdEl~~G~~D-sn~~~L~~~L~~~G~~v~~~~iv--~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~ 106 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDED-HSGPLVTELLTEAGFVVDGVVAV--EADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDV 106 (185)
T ss_dssp CEEEEEEEECHHHHTTCCC-SHHHHHHHHHHHTTEEEEEEEEE--CSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCC
T ss_pred CCEEEEEEECcccCCCCcC-cHHHHHHHHHHHCCCEEEEEEEe--CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCccc
Confidence 45677776543 12 1334556788999988543 333 34567777766655335789888877765443333
Q ss_pred ----ccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCCc
Q 013661 343 ----VAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVP 378 (438)
Q Consensus 343 ----i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p 378 (438)
++.. ... .+.|+.-+++.++|.+|-|
T Consensus 107 t~eal~~l-----~~~-----~l~G~~~~f~~v~~kpG~p 136 (185)
T 3rfq_A 107 TPESTREI-----LDR-----EILGIAEAIRASGLSAGII 136 (185)
T ss_dssp HHHHHHTT-----CSE-----ECHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHH-----hcc-----cCccHHHHHHHHhcCCCCC
Confidence 3221 111 1336666677788866655
No 146
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=46.67 E-value=38 Score=31.32 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=53.5
Q ss_pred CCeEEEEEccCC-CHHH-HHHHHHHHHHcCCc----EEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc
Q 013661 270 LPRIGIIMGSDS-DLPV-MKDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~ii~gs~s-D~~~-~~~~~~~l~~~G~~----~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
..+|+|+--.+- -+.. -+...+.|++.|+. ++..+.++.+.+.....+.+++...+++++++.+.- +.-.+.
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~--aa~a~~ 85 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP--TAQALV 85 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEESHH--HHHHHH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCH--HHHHHH
Confidence 356766642211 1222 23356678888864 778888999999998889988888889988876522 222333
Q ss_pred cCCCCCceEec
Q 013661 344 AARTPLPVIGV 354 (438)
Q Consensus 344 ~~~~~~pVi~~ 354 (438)
......||+-+
T Consensus 86 ~~~~~iPVVf~ 96 (302)
T 3lkv_A 86 SATKTIPIVFT 96 (302)
T ss_dssp HHCSSSCEEEE
T ss_pred hhcCCCCeEEE
Confidence 44456788865
No 147
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=46.63 E-value=29 Score=31.36 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCC-cEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 283 LPVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~-~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.++++.+.++++|- ....-.+. -..++.+.+.+++..+ ..+++++-.||.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 42 ERSRKELEKLLEQLNQPEAHLYQID-VQSDEEVINGFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp GGGHHHHHHHHGGGTCSSCEEEECC-TTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence 3445555556665553 22221111 2345555555544322 246666666653
No 148
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=46.63 E-value=66 Score=26.25 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccc
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
..++++.+.+...|++++..+.-.++.|. ..+++.+++.+++.+|.++-+...+..
T Consensus 78 ~~l~~~~~~~~~~g~~~~~~~~v~~G~~~--~~I~~~a~~~~~DLIV~G~~g~~~~~~ 133 (155)
T 3dlo_A 78 ETLSWAVSIIRKEGAEGEEHLLVRGKEPP--DDIVDFADEVDAIAIVIGIRKRSPTGK 133 (155)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSSCHH--HHHHHHHHHTTCSEEEEECCEECTTSC
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCHH--HHHHHHHHHcCCCEEEECCCCCCCCCC
Confidence 34555666777889998876544567764 345555677789988887644334444
No 149
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=46.14 E-value=76 Score=26.74 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEE-EEEecCCCChHHHHHhHhhh--hhcCCeEEEE
Q 013661 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSA--HERGIEIIIA 331 (438)
Q Consensus 271 ~~v~ii~gs~sD~---~~~~~~~~~l~~~G~~~~-~~v~s~hr~~~~~~~~~~~~--~~~g~~v~i~ 331 (438)
.+++|+.+.-.+. .-+..+.+.|++.|.+++ .+|-++--.|-...++.+.. ....++.+|+
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIa 79 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVA 79 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEE
Confidence 3677777554433 455667789999996653 56666777666544444210 0146787775
No 150
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=43.79 E-value=11 Score=37.43 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=38.1
Q ss_pred EccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.+||.-+.+.++.|.++|+++.+| -+ |.+++ ++.|++|.-+..
T Consensus 17 liSV~DK~gl~~~A~~L~~~G~eiisT----gG----Tak~L---~~~Gi~v~~Vs~ 62 (464)
T 1zcz_A 17 LVSLYEKEKYLDILRELHEKGWEIWAS----SG----TAKFL---KSNGIEANDVST 62 (464)
T ss_dssp EEECSSTGGGHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEEGGG
T ss_pred EEEecCccCHHHHHHHHHHCCCEEEEC----ch----HHHHH---HHCCCceEEHHh
Confidence 336788999999999999999998888 56 88888 567999887643
No 151
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=43.33 E-value=61 Score=28.98 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh-cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~-~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.++..|..+..-.+. -.+++.+.++++.+.+ .+++++|-.||.
T Consensus 39 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~g~id~lv~nAg~ 93 (252)
T 3h7a_A 39 RNGEKLAPLVAEIEAAGGRIVARSLD-ARNEDEVTAFLNAADAHAPLEVTIFNVGA 93 (252)
T ss_dssp SSGGGGHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEECc-CCCHHHHHHHHHHHHhhCCceEEEECCCc
Confidence 34566677777777777665544333 3456667766665433 357788877774
No 152
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=41.99 E-value=21 Score=33.93 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc----CCCCCceEeccCCC
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA----ARTPLPVIGVPVRA 358 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~----~~~~~pVi~~p~~~ 358 (438)
....++...|+..|++++..... .+....++.+++...+++++|++. +.+-+-.++. ..+..|+..+|..+
T Consensus 42 ~~~~~i~~~L~~~g~~~~~~~t~---~~~~a~~~~~~~~~~~~d~vvv~G-GDGTv~~v~~~l~~~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 42 RELPDALIKLEKAGYETSAYATE---KIGDATLEAERAMHENYDVLIAAG-GDGTLNEVVNGIAEKPNRPKLGVIPMGT 116 (337)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECC---STTHHHHHHHHHTTTTCSEEEEEE-CHHHHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCeEEEEEec---CcchHHHHHHHHhhcCCCEEEEEc-CchHHHHHHHHHHhCCCCCcEEEecCCc
Confidence 56678888999999887765432 223344555555556777776654 4443333332 23567888888864
No 153
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=41.70 E-value=68 Score=28.80 Aligned_cols=55 Identities=11% Similarity=0.023 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+.++++.+.+...|..+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 43 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 99 (264)
T 3ucx_A 43 RTVERLEDVAKQVTDTGRRALSVGTD-ITDDAQVAHLVDETMKAYGRVDVVINNAFRV 99 (264)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHTSCCSEEEECCCSC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 46677888888888887775544333 4556767776665433 2578888888653
No 154
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=41.69 E-value=88 Score=27.61 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=48.2
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+.-=-...+.+.++. ...| ++. +.+.+.++++.+.++..+..+..-.+. -.+++.+.+++
T Consensus 12 vlITGas~giG~~~a~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 77 (253)
T 3qiv_A 12 GIVTGSGGGIGQAYAEALARE----------GAAV-VVA--DINAEAAEAVAKQIVADGGTAISVAVD-VSDPESAKAMA 77 (253)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHC----------CCEE-EEE--cCCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHH
Confidence 566776655444444444431 2234 332 346677778777777777665443333 45566666666
Q ss_pred hhhhh--cCCeEEEEeccc
Q 013661 319 SSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~ 335 (438)
++..+ .+++++|-.||.
T Consensus 78 ~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 78 DRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 55432 268888888875
No 155
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=41.01 E-value=70 Score=29.06 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=51.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+...|..+....+. -.+++.+.++
T Consensus 26 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 91 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAAR----------GIAV-YGC--ARDAKNVSAAVDGLRAAGHDVDGSSCD-VTSTDEVHAA 91 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHH
Confidence 4667777665444444444331 2244 333 346777888888888888776554443 3456667766
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ ..++++|-.||..
T Consensus 92 ~~~~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 92 VAAAVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHHHHCSCCEEEECCCCC
T ss_pred HHHHHHHcCCCcEEEECCCCC
Confidence 655432 2688888888743
No 156
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=40.91 E-value=47 Score=30.45 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=47.7
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCC----cEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc
Q 013661 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSV----PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 271 ~~v~ii~gs~sD---~~~~~~~~~~l~~~G~----~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
..|+++. +-++ -..++.+.+.|.+.|+ ++.+.+...++.+++..++++.+.+++++.+|+....+. ..+.
T Consensus 9 ~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~--~~~~ 85 (302)
T 2qh8_A 9 AKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTA--QALV 85 (302)
T ss_dssp EEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHHH--HHHH
T ss_pred cEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHHH--HHHH
Confidence 4566653 3233 1233445567777888 666666777888888777888777778887766532111 1111
Q ss_pred cCCCCCceEec
Q 013661 344 AARTPLPVIGV 354 (438)
Q Consensus 344 ~~~~~~pVi~~ 354 (438)
......|||-+
T Consensus 86 ~~~~~iPvV~~ 96 (302)
T 2qh8_A 86 SATKTIPIVFT 96 (302)
T ss_dssp HHCSSSCEEEE
T ss_pred hcCCCcCEEEE
Confidence 12445677765
No 157
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=39.13 E-value=83 Score=28.95 Aligned_cols=85 Identities=19% Similarity=0.292 Sum_probs=52.5
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+..=-...+.+.++. ...| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.++
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 98 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARR----------GARL-VLS--DVDQPALEQAVNGLRGQGFDAHGVVCD-VRHLDEMVRL 98 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHH
Confidence 4677887765444444444432 2244 333 356778888888888888776554443 3456667776
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 99 ~~~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 99 ADEAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHhCCCCCEEEECCCcC
Confidence 655433 3688999888743
No 158
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=39.11 E-value=58 Score=31.04 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCeEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChH-HHHHhHhhhhhcCCeEEEEeccc--c
Q 013661 270 LPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGG--A 336 (438)
Q Consensus 270 ~~~v~ii~gs~s----D~~~~~~~~~~l~~~G~~~~~~v~s------~hr~~~-~~~~~~~~~~~~g~~v~i~~ag~--~ 336 (438)
...|+|++-|.. +...++.+.+.|+++|+++...-.. .-++++ +.+++.+-+.+..++++++.-|+ +
T Consensus 13 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 92 (336)
T 3sr3_A 13 GDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMNS 92 (336)
T ss_dssp TCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred CCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccccccH
Confidence 347888876643 4577888899999999997653110 112343 44555555677788988888775 4
Q ss_pred Cccccccc----CCCCCceEeccCCCCCCCChhhHHHhhhCCCC
Q 013661 337 AHLPGMVA----ARTPLPVIGVPVRASALDGLDSLLSIVQMPRG 376 (438)
Q Consensus 337 ~~l~~~i~----~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g 376 (438)
+.|.+.+- ....++++|- +...+|+..+.--.|
T Consensus 93 ~rlL~~lD~~~i~~~PK~~~Gy-------SDiTaL~~al~~~~G 129 (336)
T 3sr3_A 93 NSLLPYIDYDAFQNNPKIMIGY-------SDATALLLGIYAKTG 129 (336)
T ss_dssp GGGGGGSCHHHHHHSCCEEEEC-------GGGHHHHHHHHHHHC
T ss_pred HHHhhhcChhHHhhCCeEEEEe-------chHHHHHHHHHHhcC
Confidence 44444431 1235666662 244555544443344
No 159
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=38.92 E-value=77 Score=30.00 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCeEEEEEccC----CCHHHHHHHHHHHHHcCCcEEEEEec------CCCChH-HHHHhHhhhhhcCCeEEEEecccc--
Q 013661 270 LPRIGIIMGSD----SDLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA-- 336 (438)
Q Consensus 270 ~~~v~ii~gs~----sD~~~~~~~~~~l~~~G~~~~~~v~s------~hr~~~-~~~~~~~~~~~~g~~v~i~~ag~~-- 336 (438)
.-+|+||+-|. .+...++.+.+.|+++|+++...-.- .-++++ +..++.+-+.+..++.++++-|+.
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 91 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNS 91 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred CCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchhH
Confidence 34899996553 25677888899999999987643100 112444 455565556777889888887753
Q ss_pred Ccccc-----cccCCCCCceEe
Q 013661 337 AHLPG-----MVAARTPLPVIG 353 (438)
Q Consensus 337 ~~l~~-----~i~~~~~~pVi~ 353 (438)
+.|.+ .|+ ...++++|
T Consensus 92 ~rlL~~LD~~~i~-~~PK~~~G 112 (327)
T 4h1h_A 92 NQLLPYLDYDLIS-ENPKILCG 112 (327)
T ss_dssp GGGGGGCCHHHHH-HSCCEEEE
T ss_pred HHHhhhcchhhhc-cCCeEEEe
Confidence 34443 333 24566776
No 160
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=38.78 E-value=57 Score=31.64 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCeEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChH-HHHHhHhhhhhcCCeEEEEeccc--
Q 013661 269 VLPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGG-- 335 (438)
Q Consensus 269 ~~~~v~ii~gs~s----D~~~~~~~~~~l~~~G~~~~~~v~s------~hr~~~-~~~~~~~~~~~~g~~v~i~~ag~-- 335 (438)
....|+||+-|.. +...++.+.+.|+++|+++...-.. .-++++ +.+++.+-+.+..++++++.-|+
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGyg 121 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGDN 121 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCSC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 3447888876543 4577888899999999997644110 123443 44555555677788988888775
Q ss_pred cCccccccc----CCCCCceEe
Q 013661 336 AAHLPGMVA----ARTPLPVIG 353 (438)
Q Consensus 336 ~~~l~~~i~----~~~~~pVi~ 353 (438)
++.|.+.+- ....++++|
T Consensus 122 a~rlLp~LD~~~i~~~PK~fiG 143 (371)
T 3tla_A 122 SNSLLPFLDYDAIIANPKIIIG 143 (371)
T ss_dssp GGGGGGGSCHHHHHHSCCEEEE
T ss_pred HHHHHhhcChhhHHhCCcEEEE
Confidence 344444331 023566666
No 161
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.37 E-value=53 Score=26.29 Aligned_cols=31 Identities=13% Similarity=-0.090 Sum_probs=21.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEE
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE 301 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~ 301 (438)
..++++-.|+..-.....+.+.|.+.||++.
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~ 35 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFI 35 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEE
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEE
Confidence 4676775566555677788888888888643
No 162
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=38.23 E-value=95 Score=27.47 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=46.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+..=-...+.+.+.. ...| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.++
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~~~~~~~~~ 74 (247)
T 2jah_A 9 VALITGASSGIGEATARALAAE----------GAAV-AIA--ARRVEKLRALGDELTAAGAKVHVLELD-VADRQGVDAA 74 (247)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHH
Confidence 3566676655444444443331 2234 332 245566677777777667655443322 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 75 ~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 75 VASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 654432 368888888874
No 163
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.63 E-value=1.1e+02 Score=28.20 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=42.3
Q ss_pred CeEEEEEccCC---CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 271 PRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~ii~gs~s---D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|+++....+ -...+..+.+.+.+.|+.+.. ...+..++...++++.+..++++-+|...
T Consensus 63 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 126 (339)
T 3h5o_A 63 RTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLI--GNSHYDAGQELQLLRAYLQHRPDGVLITG 126 (339)
T ss_dssp CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHcCCCCEEEEeC
Confidence 46777765433 245666777888899987654 35677888777888887778888655443
No 164
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=37.29 E-value=2.2e+02 Score=25.23 Aligned_cols=83 Identities=10% Similarity=0.046 Sum_probs=51.1
Q ss_pred CCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc-cCccccccc
Q 013661 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVA 344 (438)
Q Consensus 269 ~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~ 344 (438)
+...|+++..+.++ ...+..+.+.+++.|+.+.. ...+..++...++++.+...+++-+|..... .......+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~- 83 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLL--ANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTE- 83 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHS-
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHh-
Confidence 34677788765554 23445556677888977654 4567788877778888888889976654422 11111111
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
.....|||.+
T Consensus 84 ~~~~iPvV~~ 93 (291)
T 3egc_A 84 LPKTFPIVAV 93 (291)
T ss_dssp SCTTSCEEEE
T ss_pred hccCCCEEEE
Confidence 2346788765
No 165
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.17 E-value=2.2e+02 Score=25.14 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=46.7
Q ss_pred CCeEEEEEccCC--C---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc
Q 013661 270 LPRIGIIMGSDS--D---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~ii~gs~s--D---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
...|+++.-+.+ + ......+.+.+++.|+.+.......+..+++..+.++.+...+++.+|........+...+.
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 356777764433 2 12334445667788877654322225677766677777777788877665433333222222
Q ss_pred C--CCCCceEec
Q 013661 345 A--RTPLPVIGV 354 (438)
Q Consensus 345 ~--~~~~pVi~~ 354 (438)
- ....|||.+
T Consensus 85 ~~~~~~iPvV~~ 96 (289)
T 3brs_A 85 EIKDAGIKLIVI 96 (289)
T ss_dssp TTGGGTCEEEEE
T ss_pred HHHHCCCcEEEE
Confidence 1 234677765
No 166
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=37.09 E-value=1.6e+02 Score=29.57 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=41.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.++..++.....+.+++..|.+.|+.+++. +..-..+.+-++.+...|++..+++
T Consensus 420 ~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~----~~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 420 TQVLVASAQKKLLEERLKLVSELWDAGIKAELL----YKKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHTTCCEEEC----SSSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 457777777778899999999999999998876 3211124444556677899955544
No 167
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=37.00 E-value=1.1e+02 Score=25.38 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=39.1
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~---------------~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
++.|..+....+......|..+|.++. +-++|..|...++.+.++.+++.|++++..
T Consensus 44 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 44 FIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEE
T ss_pred EEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 555655556677777777777776533 345666676677888888888889886543
No 168
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=36.85 E-value=1.7e+02 Score=26.12 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCeEEEEEccC-CC---HHHHHHHHHHHHHc-CCcEEEEEe-cCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccc
Q 013661 270 LPRIGIIMGSD-SD---LPVMKDAAKILTMF-SVPHEVRIV-SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~ii~gs~-sD---~~~~~~~~~~l~~~-G~~~~~~v~-s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
...|+++.... ++ ......+.+.++++ |+.+.+... ..+.+++...++++.+...+++-+|............+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 87 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFT 87 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHH
T ss_pred cceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHH
Confidence 34666666443 22 23334445666777 888776654 34667777777777777778887666543222222222
Q ss_pred cC--CCCCceEec
Q 013661 344 AA--RTPLPVIGV 354 (438)
Q Consensus 344 ~~--~~~~pVi~~ 354 (438)
.. ....|||.+
T Consensus 88 ~~~~~~~iPvV~~ 100 (304)
T 3gbv_A 88 DALNELGIPYIYI 100 (304)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHCCCeEEEE
Confidence 11 235677765
No 169
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=36.47 E-value=85 Score=28.38 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=49.1
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.++..|..+....+. -.+++.+.++
T Consensus 6 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 71 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVA----------GAKI-LLG--ARRQARIEAIATEIRDAGGTALAQVLD-VTDRHSVAAF 71 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 3566666654333434443331 2244 333 345677888888888887765544333 3456667776
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 72 ~~~~~~~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 72 AQAAVDTWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 655432 3688999888753
No 170
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=36.44 E-value=78 Score=23.70 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=31.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH---HHHHHHHHHHHHHhHh-hhhhhh
Q 013661 389 NAGLLAVRMLGFGDADLRARMQQYME---DMRDDVLTKAEKLQKD-GWESYL 436 (438)
Q Consensus 389 ~Aa~~a~~il~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 436 (438)
.+++.|++.|-..||.|++.|..|+. ++...+-...+.|.++ .+-+|+
T Consensus 42 q~~v~ai~sl~~qDpnV~kDLdn~~acL~k~~~t~~rat~SLL~KprVaA~L 93 (97)
T 3g80_A 42 QETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRATNSLLIKPRVAAAL 93 (97)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 47778888888899999999999987 3343433333444333 244554
No 171
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=36.07 E-value=2.2e+02 Score=25.51 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEc--cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMG--SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 244 ~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~g--s~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
...+.|+..+...+.... ..+.++.. +......++++.+.+...|++++..+.. +++|. ..+++.+
T Consensus 18 ~~s~~al~~A~~la~~~~---------a~l~ll~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~g~~~--~~i~~~a 85 (290)
T 3mt0_A 18 QLEGLALKRAQLIAGVTQ---------SHLHLLVCEKRRDHSAALNDLAQELREEGYSVSTNQAW-KDSLH--QTIIAEQ 85 (290)
T ss_dssp CSCCHHHHHHHHHHHHHC---------CEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEEC-SSSHH--HHHHHHH
T ss_pred ccchHHHHHHHHHHHhcC---------CeEEEEEeeCcHHHHHHHHHHHHHHhhCCCeEEEEEEe-CCCHH--HHHHHHH
Confidence 344567777666665432 22333333 2445678888888889999999888753 34442 3345445
Q ss_pred hhcCCeEEEEeccccCcccccc--------cCCCCCceEeccCC
Q 013661 322 HERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIGVPVR 357 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVi~~p~~ 357 (438)
++.+++.++.+..+...+...+ ......||+-+|..
T Consensus 86 ~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 86 QAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 6778998887764443343332 23467899999853
No 172
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=36.02 E-value=28 Score=25.51 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=33.6
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------EEEecCCCChHHHHHhHhhhhhcCCeE
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE---------VRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~---------~~v~s~hr~~~~~~~~~~~~~~~g~~v 328 (438)
|-.|+-++...++.+...|...|++.. +. ++...+.++..+...+++..|++.
T Consensus 12 vQvGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~-vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 12 VQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVV-IGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp CBCCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEE-ESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEE-ECCcCCHHHHHHHHHHHHHcCCCc
Confidence 556777788888888888888887732 22 234444555556666666666653
No 173
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=35.94 E-value=1e+02 Score=28.09 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=49.2
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.+++
T Consensus 31 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 96 (283)
T 3v8b_A 31 ALITGAGSGIGRATALALAAD----------GVTV-GAL--GRTRTEVEEVADEIVGAGGQAIALEAD-VSDELQMRNAV 96 (283)
T ss_dssp EEEESCSSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHTTTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHH
Confidence 566776655444444443331 2344 333 355677888888887777775544333 35566677766
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013661 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 97 ~~~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 97 RDLVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 55432 3688888888753
No 174
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=35.63 E-value=1.1e+02 Score=27.62 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=46.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+...|..+..-.+. -..++.+.++
T Consensus 23 ~vlVTGas~gIG~aia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 88 (273)
T 1ae1_A 23 TALVTGGSKGIGYAIVEELAGL----------GARV-YTC--SRNEKELDECLEIWREKGLNVEGSVCD-LLSRTERDKL 88 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCcchHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHH
Confidence 3666776655444444444331 2234 332 244566677777777667665443333 3456666666
Q ss_pred Hhhhhh---cCCeEEEEeccc
Q 013661 318 ASSAHE---RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~---~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 89 MQTVAHVFDGKLNILVNNAGV 109 (273)
T ss_dssp HHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCcEEEECCCC
Confidence 655432 468888888874
No 175
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=35.58 E-value=1.1e+02 Score=28.77 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC------CCCCceEeccCC
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA------RTPLPVIGVPVR 357 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~------~~~~pVi~~p~~ 357 (438)
....++.+.|++.|++++..... .+....++.+++...+++++|++ |+.+-+-.++.+ ....|+-.+|..
T Consensus 44 ~~~~~i~~~l~~~g~~~~~~~t~---~~~~~~~~~~~~~~~~~d~vvv~-GGDGTl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 44 LPLREAIMLLREEGMTIHVRVTW---EKGDAARYVEEARKFGVATVIAG-GGDGTINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECC---STTHHHHHHHHHHHHTCSEEEEE-ESHHHHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred chHHHHHHHHHHcCCcEEEEEec---CcchHHHHHHHHHhcCCCEEEEE-ccchHHHHHHHHHhhcccCCCCeEEEecCc
Confidence 56678888999999988766432 23334455544444567766655 444444444332 345576667875
Q ss_pred C
Q 013661 358 A 358 (438)
Q Consensus 358 ~ 358 (438)
+
T Consensus 120 t 120 (332)
T 2bon_A 120 T 120 (332)
T ss_dssp S
T ss_pred C
Confidence 3
No 176
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=35.43 E-value=1.1e+02 Score=25.73 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=48.5
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcc
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~---------------~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
++.|..+....+......|..+|+++. +-++|..|...++.+.++.+++.|++++..-......|
T Consensus 41 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l 120 (186)
T 1m3s_A 41 FTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSI 120 (186)
T ss_dssp EEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHH
T ss_pred EEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCch
Confidence 555655556777777777777777643 44567777777788888888888988654332222223
Q ss_pred cccccCCCCCceEeccCC
Q 013661 340 PGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 340 ~~~i~~~~~~pVi~~p~~ 357 (438)
... .+-+|-+|..
T Consensus 121 ~~~-----ad~~l~~~~~ 133 (186)
T 1m3s_A 121 GKQ-----ADLIIRMPGS 133 (186)
T ss_dssp HHH-----CSEEEECSCC
T ss_pred HHh-----CCEEEEeCCc
Confidence 222 2346666664
No 177
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=35.37 E-value=92 Score=29.56 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCCeEEEEEccCC----CHHHHHHHHHHHHHcCCcEEEEEec------CCCChH-HHHHhHhhhhhcCCeEEEEeccc--
Q 013661 269 VLPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGG-- 335 (438)
Q Consensus 269 ~~~~v~ii~gs~s----D~~~~~~~~~~l~~~G~~~~~~v~s------~hr~~~-~~~~~~~~~~~~g~~v~i~~ag~-- 335 (438)
....|+|++-|.. +...++.+.+.|+++|+++...-.. .-++++ +.+++.+-+.+..++++++.-|+
T Consensus 11 ~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (331)
T 4e5s_A 11 KGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYN 90 (331)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 3447888876543 4678889999999999997644110 113444 44445555677788988888775
Q ss_pred cCcccccc-----cCCCCCceEeccCCCCCCCChhhHHHhhhCCCC
Q 013661 336 AAHLPGMV-----AARTPLPVIGVPVRASALDGLDSLLSIVQMPRG 376 (438)
Q Consensus 336 ~~~l~~~i-----~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g 376 (438)
++.|.+.+ + ...++++|- +...+|+..+.--.|
T Consensus 91 ~~rlL~~lD~~~i~-~~PK~~~Gy-------SDiTaL~~al~~~~G 128 (331)
T 4e5s_A 91 SNGLLKYLDYDLIR-ENPKFFCGY-------SDITALNNAIYTKTG 128 (331)
T ss_dssp GGGGGGGCCHHHHH-TSCCEEEEC-------GGGHHHHHHHHHHHC
T ss_pred HHHHHhhcChhHHH-hCCeEEEEe-------cchHHHHHHHHHhhC
Confidence 44444433 2 245666663 244555544443334
No 178
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=35.35 E-value=2.5e+02 Score=25.25 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=50.5
Q ss_pred CeEEEEEcc---CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--C
Q 013661 271 PRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--A 345 (438)
Q Consensus 271 ~~v~ii~gs---~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~ 345 (438)
..|+++.-+ .--......+.+.++++|+.+... .....++.-.++++.+..++++.+|........+...+. .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQ--SANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 456666543 223455666677888898776544 557778777778887777889877765533333333332 1
Q ss_pred CCCCceEec
Q 013661 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVi~~ 354 (438)
....|||.+
T Consensus 81 ~~~iPvV~~ 89 (313)
T 3m9w_A 81 QEGIKVLAY 89 (313)
T ss_dssp TTTCEEEEE
T ss_pred HCCCeEEEE
Confidence 345688776
No 179
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=35.33 E-value=1.1e+02 Score=27.10 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=44.5
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+.-=-...+.+.+.. ...| ++. +.+.+.+.++.+.+...|..+..-.+. -..++.+.+++
T Consensus 12 vlVTGas~giG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 77 (260)
T 2ae2_A 12 ALVTGGSRGIGYGIVEELASL----------GASV-YTC--SRNQKELNDCLTQWRSKGFKVEASVCD-LSSRSERQELM 77 (260)
T ss_dssp EEEESCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 566776655444444443331 2234 332 244566666666666666554433333 34566666666
Q ss_pred hhhhh---cCCeEEEEeccc
Q 013661 319 SSAHE---RGIEIIIAGAGG 335 (438)
Q Consensus 319 ~~~~~---~g~~v~i~~ag~ 335 (438)
++..+ .+++++|-.||.
T Consensus 78 ~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 78 NTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHcCCCCCEEEECCCC
Confidence 54432 358888888874
No 180
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=35.01 E-value=1e+02 Score=27.00 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+..+++.+.++..|..+..-.+. -..++.+.++++++.+ ..++++|-.||.
T Consensus 37 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 37 TSQASAEKFENSMKEKGFKARGLVLN-ISDIESIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35566777777777777765544333 3456666666665433 246778877764
No 181
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=34.92 E-value=1.1e+02 Score=27.20 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.+...|..+..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 39 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 39 MNREALEKAEASVREKGVEARSYVCD-VTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 34556666666666666554433333 3456666665554322 257888887764
No 182
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=34.57 E-value=1.1e+02 Score=28.22 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=46.8
Q ss_pred HHHcCCcEEEEE-ec--CCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEec
Q 013661 293 LTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 293 l~~~G~~~~~~v-~s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 354 (438)
.+.+|++....+ .+ .-=+|.++.++++.+++.+++++..-...+..+...|+..+..+|+.+
T Consensus 188 ~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 188 EKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTL 252 (284)
T ss_dssp HHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred HHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEe
Confidence 367899854332 22 345678888998888999999999888777788888888888887655
No 183
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.48 E-value=2.7e+02 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=38.4
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|+++....++ ...+..+.+.+++.|+.+... ..+..++...++++.+..++++-+|...
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~ 130 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIIT--NSNEDATTMSGSLEFLTSHGVDGIICVP 130 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEE--ECTTCHHHHHHHHHHHHHTTCSCEEECC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 457777654333 133445556778899887654 4466777666777777777888655543
No 184
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=34.21 E-value=2.2e+02 Score=24.97 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=44.4
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
...|+++..+.++ ......+.+.++++|+.+... ..+ +++...++++.+.+++++-+| ..... . ...+..
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~-~-~~~~~~- 77 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVI--DSL-TSQAGTDPITSALSMRPDGII-IAQDI-P-DFTVPD- 77 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEE--CSS-SSCSSSCHHHHHHTTCCSEEE-EESCC----------
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEE--eCC-CchHHHHHHHHHHhCCCCEEE-ecCCC-C-hhhHhh-
Confidence 4667787755443 445556667788899876554 445 665555666666777899777 33211 1 222322
Q ss_pred CCCceEec
Q 013661 347 TPLPVIGV 354 (438)
Q Consensus 347 ~~~pVi~~ 354 (438)
...|||.+
T Consensus 78 ~~iPvV~~ 85 (280)
T 3gyb_A 78 SLPPFVIA 85 (280)
T ss_dssp -CCCEEEE
T ss_pred cCCCEEEE
Confidence 56677765
No 185
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=34.21 E-value=2.3e+02 Score=25.16 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=49.7
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCC--ChHHHHHhHhhhhhcCCeEEEEeccccCccccccc
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr--~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
...|+++.-+.++ ......+.+.++++|+.+... ..+. .++.-.+.++.+..++++.+|........+...+.
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVL--EAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEE--ECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 3567777765444 223345556677888876554 4455 77777778887777789877765433332233321
Q ss_pred C-CCCCceEec
Q 013661 345 A-RTPLPVIGV 354 (438)
Q Consensus 345 ~-~~~~pVi~~ 354 (438)
. ....|||.+
T Consensus 83 ~~~~~iPvV~~ 93 (304)
T 3o1i_D 83 SWVGNTPVFAT 93 (304)
T ss_dssp HHTTTSCEEEC
T ss_pred HHcCCCCEEEe
Confidence 1 146788776
No 186
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=34.04 E-value=74 Score=29.28 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=42.7
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHH
Q 013661 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL 313 (438)
Q Consensus 234 ~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~ 313 (438)
.++.-|++-+.-.-.|..+..... ...| ++. +.+.+.++++. +++|-+...-.+. -..++.
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~------------Ga~V-~i~--~r~~~~l~~~~---~~~g~~~~~~~~D-v~~~~~ 89 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAE------------GARV-FIT--GRRKDVLDAAI---AEIGGGAVGIQAD-SANLAE 89 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHT------------TCEE-EEE--ESCHHHHHHHH---HHHCTTCEEEECC-TTCHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHC------------CCEE-EEE--ECCHHHHHHHH---HHcCCCeEEEEec-CCCHHH
Confidence 344444444444555555544322 2344 443 34556666654 4456553322222 456677
Q ss_pred HHHhHhhhhh--cCCeEEEEeccc
Q 013661 314 MFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 314 ~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+++++..+ .+++++|-.||.
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNAG~ 113 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNAGG 113 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 7777665432 357788888864
No 187
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=33.62 E-value=88 Score=27.90 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.++..|..+..-.+. -..++.+.++++++.+ .+++++|-.||.
T Consensus 38 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 38 RTKEKLEEAKLEIEQFPGQILTVQMD-VRNTDDIQKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp SCHHHHHHHHHHHCCSTTCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45566666666666666554433222 3445556665554432 257777777763
No 188
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=33.56 E-value=1e+02 Score=27.48 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=50.8
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+..=-...+.+.++. ...| ++. +.+.+.++++.+.+...|..+....+. -..++.+.++
T Consensus 31 ~vlITGas~gIG~~la~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~ 96 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSL----------GARV-VLT--ARDVEKLRAVEREIVAAGGEAESHACD-LSHSDAIAAF 96 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHHhCCceeEEEec-CCCHHHHHHH
Confidence 4667777665444444444432 2244 333 356778888888888888776554433 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++...+ ..++++|-.||.
T Consensus 97 ~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 97 ATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 655422 358888888875
No 189
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.43 E-value=2.9e+02 Score=25.39 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=49.1
Q ss_pred CCeEEEEEccCCC----HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccccCcccccc
Q 013661 270 LPRIGIIMGSDSD----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~ii~gs~sD----~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~~~l~~~i 343 (438)
..+|+++.-+.++ ......+.+.++++|+.+... ....++++-.+.++.+-. ++++.+|... .......++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHHHH
Confidence 3567777766555 233445556677888876654 557777776666766655 5888666653 222333333
Q ss_pred c--CCCCCceEec
Q 013661 344 A--ARTPLPVIGV 354 (438)
Q Consensus 344 ~--~~~~~pVi~~ 354 (438)
. .....|||.+
T Consensus 80 ~~~~~~giPvV~~ 92 (350)
T 3h75_A 80 RLSQGSGIKLFIV 92 (350)
T ss_dssp HHHTTSCCEEEEE
T ss_pred HHHHhCCCcEEEE
Confidence 2 2346788765
No 190
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=33.33 E-value=1.2e+02 Score=27.28 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=47.3
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+...|..+....+. -..++.+.++
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~~~~~v~~~ 89 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKE----------GLRV-FVC--ARGEEGLRTTLKELREAGVEADGRTCD-VRSVPEIEAL 89 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHH
Confidence 4677777665444444444331 2244 333 245566677777777777665443333 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 90 ~~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 90 VAAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp HHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 654422 258889888874
No 191
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.32 E-value=1.2e+02 Score=26.91 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecccc-CcccccccC
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~ 345 (438)
...|+++....++ ......+.+.+++.|+.+.. .....+++...+.++.+..++++.+|...... ..+...+..
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~ 84 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE 84 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh
Confidence 3567777654333 12334455667788887654 34567777767777777777888666544222 223333332
Q ss_pred CCCCceEec
Q 013661 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVi~~ 354 (438)
....|||.+
T Consensus 85 ~~~iPvV~~ 93 (289)
T 1dbq_A 85 YRHIPMVVM 93 (289)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 245677765
No 192
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=32.91 E-value=2.6e+02 Score=24.85 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=47.1
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA-- 344 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~-- 344 (438)
.++++++.-+.++ ...+..+.+.++++|+.+... ...+.++++..++++.+...+++.+|........+...+.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 3456666544333 123344456667788876542 2457778777778877777788866665432222223331
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
.....|||.+
T Consensus 83 ~~~~iPvV~~ 92 (305)
T 3g1w_A 83 VDAGIPIVLF 92 (305)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCcEEEE
Confidence 1235677765
No 193
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=32.87 E-value=1.1e+02 Score=27.36 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+.++++.+.+...|..+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 44 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 44 LKSEGAEAVAAAIRQAGGKAIGLECN-VTDEQHREAVIKAALDQFGKITVLVNNAGGG 100 (256)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 45667777777777777665443332 3456666666655432 2678888887643
No 194
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=32.62 E-value=1.2e+02 Score=24.24 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCc-EEEEEecCCCChHHHHHhHhh-hhhcCCeEEEEeccc
Q 013661 284 PVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASS-AHERGIEIIIAGAGG 335 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~-~~~~v~s~hr~~~~~~~~~~~-~~~~g~~v~i~~ag~ 335 (438)
..+.++.+.++..|++ ++..+.. .+.|. ..+++. +++.+++.++.++-+
T Consensus 79 ~~l~~~~~~~~~~g~~~~~~~v~~-~g~~~--~~I~~~~a~~~~~DlIV~G~~g 129 (156)
T 3fg9_A 79 DVVAEYVQLAEQRGVNQVEPLVYE-GGDVD--DVILEQVIPEFKPDLLVTGADT 129 (156)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEE-CSCHH--HHHHHTHHHHHCCSEEEEETTC
T ss_pred HHHHHHHHHHHHcCCCceEEEEEe-CCCHH--HHHHHHHHHhcCCCEEEECCCC
Confidence 3455556667778994 7766653 25553 345555 567789988877643
No 195
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=32.42 E-value=2.9e+02 Score=25.23 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=46.8
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCC
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
...|+++....++ ...+..+.+.+++.|+.+... ..+. ++.-.++++.+..++++-+|.... +..+ ..
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~----~~~~--~~ 134 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV----VGSI--AP 134 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC----TTCC--C-
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch----HHHH--hh
Confidence 3567787765444 234455567778899876654 4455 777777888777788997665432 1111 12
Q ss_pred CCCceEec
Q 013661 347 TPLPVIGV 354 (438)
Q Consensus 347 ~~~pVi~~ 354 (438)
...|||.+
T Consensus 135 ~~iPvV~~ 142 (333)
T 3jvd_A 135 EGIPMVQL 142 (333)
T ss_dssp CCSCEEEE
T ss_pred CCCCEEEE
Confidence 35677765
No 196
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=32.36 E-value=2e+02 Score=25.14 Aligned_cols=49 Identities=14% Similarity=-0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcC-CeEEEEec
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG-IEIIIAGA 333 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g-~~v~i~~a 333 (438)
....+.+.++++|+.+.......+.++++-.+.++.+.+.+ ++.+|...
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~ 67 (276)
T 3ksm_A 18 VYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAP 67 (276)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 34445556667776655442224566666666666666666 77655543
No 197
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.31 E-value=2e+02 Score=24.03 Aligned_cols=69 Identities=14% Similarity=0.022 Sum_probs=41.0
Q ss_pred CCeEEEEEccCC------------CHHHHHHHHHHHHHcCCcEE-EEEecCCCChHHHHHhHhhh-hhcCCeEEEEeccc
Q 013661 270 LPRIGIIMGSDS------------DLPVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSA-HERGIEIIIAGAGG 335 (438)
Q Consensus 270 ~~~v~ii~gs~s------------D~~~~~~~~~~l~~~G~~~~-~~v~s~hr~~~~~~~~~~~~-~~~g~~v~i~~ag~ 335 (438)
.-+++||+.||+ |. ...-+.+.|.++|+++. ..++ --.++.+.+-+.+. ....++++|+..|.
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~-ng~~L~~~L~~~G~~v~~~~iV--~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDE-SGDIIKQLLIENGHKIIGYSLV--PDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCH-HHHHHHHHHHHTTCEEEEEEEE--CSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCEEEEEEEcCCCccccccCCCCCcc-hHHHHHHHHHHCCCEEEEEEEe--CCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 357788887762 32 22346788999999964 3333 23455555544432 23467888887776
Q ss_pred cCcccc
Q 013661 336 AAHLPG 341 (438)
Q Consensus 336 ~~~l~~ 341 (438)
+..--+
T Consensus 92 g~~~~D 97 (178)
T 3iwt_A 92 GYSPTD 97 (178)
T ss_dssp SSSTTC
T ss_pred ccCCCC
Confidence 544333
No 198
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=32.30 E-value=2.1e+02 Score=23.60 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=30.0
Q ss_pred EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccC
Q 013661 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 301 ~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~ 356 (438)
.+-++|..|...++.+.++.+++.|++++..-....+.|... .+-+|-+|.
T Consensus 99 ~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~-----ad~~l~~~~ 149 (183)
T 2xhz_A 99 VVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARA-----ADVHLCVKV 149 (183)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHH-----SSEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHh-----CCEEEEeCC
Confidence 355567677767788888888888888654333222233322 234566665
No 199
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=31.69 E-value=88 Score=28.29 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.+.+.++.+.+...|..+....+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 57 ~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 113 (271)
T 4ibo_A 57 GTDPSRVAQTVQEFRNVGHDAEAVAFD-VTSESEIIEAFARLDEQGIDVDILVNNAGI 113 (271)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCCC-TTCHHHHHHHHHHHHHHTCCCCEEEECCCC
T ss_pred eCCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 456777888888888877665443222 3456666666655432 257888888874
No 200
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=31.45 E-value=2.6e+02 Score=24.30 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=40.3
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+.|+++..+.++ ......+.+.+++.|+.+... ..+..++.-.++++.+...+++-+|...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 66 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIA--SSDDQPDSERQLQQLFRARRCDALFVAS 66 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 456677655444 223445556777888876544 5577788777788777778888766654
No 201
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=31.14 E-value=1.3e+02 Score=26.02 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHH-HcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~-~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.+. ..|..+....+. -.+++.+.+++++..+ .+++++|-.||.
T Consensus 34 r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 90 (235)
T 3l77_A 34 RSVDRLEKIAHELMQEQGVEVFYHHLD-VSKAESVEEFSKKVLERFGDVDVVVANAGL 90 (235)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEECC-TTCHHHHHHHCC-HHHHHSSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEec-cCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 34556666665554 556555433322 3455666665544322 257777777764
No 202
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=31.05 E-value=1.1e+02 Score=27.28 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcC-CcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G-~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.++..| ..+..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 42 r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 98 (262)
T 3pk0_A 42 RSTADIDACVADLDQLGSGKVIGVQTD-VSDRAQCDALAGRAVEEFGGIDVVCANAGV 98 (262)
T ss_dssp SCHHHHHHHHHHHHTTSSSCEEEEECC-TTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHhhCCCcEEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45667777777777766 343333222 3456666666654422 268888888874
No 203
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=31.05 E-value=94 Score=28.19 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=46.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.++. ...| ++.+ .+.+.++++.+.+...|..+..-.+. -.+++.+.++
T Consensus 34 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~v~~~ 99 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEA----------GAQV-AVAA--RHSDALQVVADEIAGVGGKALPIRCD-VTQPDQVRGM 99 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TCEE-EEEE--SSGGGGHHHHHHHHHTTCCCEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHH
Confidence 3566776655444444443331 2344 3333 34456677777777777664433322 3456667776
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 100 ~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 100 LDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 665432 268888888864
No 204
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=30.66 E-value=95 Score=27.22 Aligned_cols=62 Identities=3% Similarity=-0.201 Sum_probs=33.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-CC-------CChHHHHHhHhhhhhc--CCeEEE-Eecc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-AH-------RTPDLMFSYASSAHER--GIEIII-AGAG 334 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s-~h-------r~~~~~~~~~~~~~~~--g~~v~i-~~ag 334 (438)
++|++++ ......-....+.|+..|+++..-... .. .+++.+.+.++++.+. |++++| .|++
T Consensus 109 ~rvgvlt--~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIvLgCT~ 181 (223)
T 2dgd_A 109 RKLWIGT--PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTA 181 (223)
T ss_dssp CEEEEEE--SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTT
T ss_pred CeEEEEe--CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEEEEeCCc
Confidence 5677885 222333445556788889885332221 11 2355566666666555 676443 4443
No 205
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=30.42 E-value=96 Score=28.22 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.+.++++.+.+...|..+..-.+. -..++.+.++++...+ .+++++|-.||.
T Consensus 39 ~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 95 (280)
T 3tox_A 39 ARNGNALAELTDEIAGGGGEAAALAGD-VGDEALHEALVELAVRRFGGLDTAFNNAGA 95 (280)
T ss_dssp CSCHHHHHHHHHHHTTTTCCEEECCCC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345566667666666666554332222 2345555555554322 267888877764
No 206
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=30.22 E-value=3.1e+02 Score=24.87 Aligned_cols=106 Identities=12% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccCCCCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHH
Q 013661 246 MGLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 246 ~~eA~~ka~~a~~~i~~~~~------~~~~~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++..+|..+++.++.+.+. ...+...|+++....++ ...+..+.+.+++.|+.+... ..+..++...+
T Consensus 30 s~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~ 107 (332)
T 2hsg_A 30 KPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS--NSDQNQDKELH 107 (332)
T ss_dssp CHHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE--ECCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCChHHHHH
Confidence 35667777777766655310 01123567777654333 234455567778899876543 44566666667
Q ss_pred hHhhhhhcCCeEEEEeccc-cCcccccccCCCCCceEec
Q 013661 317 YASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVi~~ 354 (438)
+++.+..++++-+|..... .......+. ....||+.+
T Consensus 108 ~~~~l~~~~vdgiI~~~~~~~~~~~~~l~-~~~iPvV~~ 145 (332)
T 2hsg_A 108 LLNNMLGKQVDGIIFMSGNVTEEHVEELK-KSPVPVVLA 145 (332)
T ss_dssp HHHHTSCCSSCCEEECCSSCCHHHHHHHT-TSSSCEEEE
T ss_pred HHHHHHhCCCcEEEEecCCCCHHHHHHHH-hCCCCEEEE
Confidence 7777777788866554322 111111121 245677765
No 207
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=30.15 E-value=2.4e+02 Score=23.42 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=17.2
Q ss_pred EEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 302 VRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 302 ~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
+-++|..|....+.+.++.+++.|++++.
T Consensus 91 ~i~iS~sG~t~~~~~~~~~ak~~g~~vi~ 119 (187)
T 3sho_A 91 MIGVSVWRYLRDTVAALAGAAERGVPTMA 119 (187)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCCEEE
Confidence 34455555555566666666666776543
No 208
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.94 E-value=3e+02 Score=24.51 Aligned_cols=82 Identities=7% Similarity=0.007 Sum_probs=51.5
Q ss_pred CCeEEEEEccCCC---H-HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC
Q 013661 270 LPRIGIIMGSDSD---L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~-~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
...|+++.-+.++ . ..+..+.+.+++.|+.+... ..+..++.-.++++.+..++++-+|............ ..
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~-~~ 89 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIA--NTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPE-SG 89 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCC-CT
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCCEEEEecCCccHHHHH-HH
Confidence 4567777755432 2 67777888899999876554 4577788777788888888899555443221111111 12
Q ss_pred CCCCceEec
Q 013661 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVi~~ 354 (438)
....|||.+
T Consensus 90 ~~~iPvV~~ 98 (301)
T 3miz_A 90 DVSIPTVMI 98 (301)
T ss_dssp TCCCCEEEE
T ss_pred hCCCCEEEE
Confidence 345688765
No 209
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=29.89 E-value=2.9e+02 Score=24.42 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=33.6
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 272 ~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.|.++.-+..+.+.++++.+.+...|..+..-.+. -.+++.+.+++++..+ .+++++|-.||.
T Consensus 37 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 37 NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSD-LSNEEEVAKLFDFAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECC-CCSHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 44333323445666777777776666554433222 3345556666554432 256677766663
No 210
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=29.81 E-value=3e+02 Score=24.44 Aligned_cols=79 Identities=10% Similarity=-0.012 Sum_probs=43.0
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEecc-ccCcccccccC
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~ 345 (438)
...|+++. +.++ ...+..+.+.+++.|+.+.... .+..++ -.+.++.+..++++-+|.... ........+.
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~- 86 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSA--VAPSRA-EKVAVQALMRERCEAAILLGTRFDTDELGALA- 86 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEE--EBTTBC-HHHHHHHHTTTTEEEEEEETCCCCHHHHHHHH-
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEe--CCCCHH-HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHH-
Confidence 35677777 5444 1234445567788898766543 344444 455666666778886665442 2222222222
Q ss_pred CCCCceEec
Q 013661 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVi~~ 354 (438)
. ..|||.+
T Consensus 87 ~-~iPvV~i 94 (289)
T 3k9c_A 87 D-RVPALVV 94 (289)
T ss_dssp T-TSCEEEE
T ss_pred c-CCCEEEE
Confidence 2 6787765
No 211
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.72 E-value=2.3e+02 Score=25.05 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=46.2
Q ss_pred CCeEEEEEcc-----CCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc-cCccc
Q 013661 270 LPRIGIIMGS-----DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLP 340 (438)
Q Consensus 270 ~~~v~ii~gs-----~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~ 340 (438)
...|+++..+ .++ ......+.+.+++.|+.+.. ...+..++...++++.+.+.+++-+|..... .....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~ 85 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM--STGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRII 85 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE--CCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHH
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH
Confidence 4567777655 232 13344555677888876554 4556666666667777777788866654322 22111
Q ss_pred ccccCCCCCceEec
Q 013661 341 GMVAARTPLPVIGV 354 (438)
Q Consensus 341 ~~i~~~~~~pVi~~ 354 (438)
..+. ....|||.+
T Consensus 86 ~~l~-~~~iPvV~~ 98 (292)
T 3k4h_A 86 QYLH-EQNFPFVLI 98 (292)
T ss_dssp HHHH-HTTCCEEEE
T ss_pred HHHH-HCCCCEEEE
Confidence 2221 235677765
No 212
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=29.67 E-value=98 Score=27.15 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCcc-----------eEEEEEEEEeCCCcEEEEEEcCCC
Q 013661 111 ELATDVAHKAVSSLEGA-----------GIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 111 ~~i~~~a~~i~~~lg~~-----------G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
.+.++++.++++..||. |-..+|++..+++..+++||-.|-
T Consensus 18 ~~fE~~va~~L~~~Gy~i~~~v~v~~r~~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 18 YFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEEETTEEEEEEECCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEeecccCCCCCCcEEEEEEECCEEEEEEecccc
Confidence 35788899999999985 356899998878889999998775
No 213
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=29.60 E-value=1.3e+02 Score=26.67 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.+.+..+.+...|..+....+. -..++.+.+.+++..+ .+++++|-.||.
T Consensus 46 r~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~ 101 (260)
T 2zat_A 46 RKQENVDRTVATLQGEGLSVTGTVCH-VGKAEDRERLVAMAVNLHGGVDILVSNAAV 101 (260)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34555666666666666654433322 3456656555544322 268888888774
No 214
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=29.51 E-value=2e+02 Score=26.19 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+.+.+..+.++..|..+....+. -.+++.+.++++++.+ .+++++|-.||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 73 TPDDLAETVRQVEALGRRIIASQVD-VRDFDAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4777888888888888776555444 4567777777765432 3688999888743
No 215
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=29.42 E-value=1.3e+02 Score=27.82 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC----CCCCceEeccCCC
Q 013661 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA----RTPLPVIGVPVRA 358 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~----~~~~pVi~~p~~~ 358 (438)
.....++...|+..|+++++... ..+....++.+++.+ ++++++++ |+.+-+-.++.+ .+..|+--+|..+
T Consensus 25 ~~~~~~i~~~l~~~~~~~~~~~t---~~~~~a~~~~~~~~~-~~d~vv~~-GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt 99 (304)
T 3s40_A 25 HTNLTKIVPPLAAAFPDLHILHT---KEQGDATKYCQEFAS-KVDLIIVF-GGDGTVFECTNGLAPLEIRPTLAIIPGGT 99 (304)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEC---CSTTHHHHHHHHHTT-TCSEEEEE-ECHHHHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEEc---cCcchHHHHHHHhhc-CCCEEEEE-ccchHHHHHHHHHhhCCCCCcEEEecCCc
Confidence 35667888899999998876643 234445566666543 77776655 444444444322 2456666778754
No 216
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=29.35 E-value=1.7e+02 Score=29.48 Aligned_cols=36 Identities=14% Similarity=-0.063 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 306 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s 306 (438)
++|.|++|+-.+=-...-+++.|...|+++.+-...
T Consensus 53 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 88 (502)
T 3rss_A 53 YRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLG 88 (502)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEEC
Confidence 456666666555555666666666666665555444
No 217
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=29.31 E-value=1e+02 Score=29.59 Aligned_cols=64 Identities=23% Similarity=0.159 Sum_probs=39.1
Q ss_pred HHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcc
Q 013661 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 388 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~--~~~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~ 388 (438)
+++.+++.++++.|- .+.|+| ..-+.|||.. +.-++.+|+.|+.+-|. || |=-|.|+.++
T Consensus 187 ~~m~~~I~~~k~~gD-----------S~GGvv----e~v~~gvP~GLG~pvfdkLda~LA~AlmS--I~AvKGvEiG~GF 249 (370)
T 1sq1_A 187 SDFKNEILNARNSKD-----------SVGAAV----FTKVSGMLIGLGEVLYDKLDSKLAHALMG--INAVKAVEIGEGI 249 (370)
T ss_dssp HHHHHHHHHHHHTTC-----------CCCEEE----EEEEESCCBSCSBTTTBCHHHHHHHHHHT--STTEEEEEETTGG
T ss_pred HHHHHHHHHHHHhCC-----------CCeEEE----EEEEEcCCCCCCCcccccchHHHHHHhcC--ccceeEEEeccch
Confidence 456677777766553 233332 2234566664 23377889989777773 23 5588999888
Q ss_pred hHHH
Q 013661 389 NAGL 392 (438)
Q Consensus 389 ~Aa~ 392 (438)
.+|.
T Consensus 250 ~~a~ 253 (370)
T 1sq1_A 250 NASK 253 (370)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 7653
No 218
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=29.27 E-value=4.6e+02 Score=27.30 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=64.5
Q ss_pred eeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-------
Q 013661 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------- 307 (438)
Q Consensus 235 ~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~------- 307 (438)
.+=..+..|++.++++++-.+..+.-..++ ...-|.- ...=+..+.+.++++++.+++.|+++++-++..
T Consensus 132 ~lD~y~~~G~~p~~v~~~Y~~ltG~~~lpP--~walG~~-qsr~~Y~~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~~~~ 208 (666)
T 3nsx_A 132 DLDIYVIEGENAYDIVKQFRRVIGRSYIPP--KFAFGFG-QSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFK 208 (666)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHCCCCCCC--GGGGSEE-EEETTCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTTC
T ss_pred ceEEEEEcCCCHHHHHHHHHHhhCcccCCc--ccccccc-ccccccCCHHHHHHHHHHHHhcCCCcceEEEecHHHHhhc
Confidence 344555669999999999999888644210 0112221 223356688999999999999999999877662
Q ss_pred ------CCChHHHHHhHhhhhhcCCeEEE
Q 013661 308 ------HRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 308 ------hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
.|=|+ ..++++++++.|+++.+
T Consensus 209 ~ft~d~~~FPd-p~~mv~~Lh~~G~k~v~ 236 (666)
T 3nsx_A 209 DFTVNEKNFPD-FPEFVKEMKDQELRLIP 236 (666)
T ss_dssp TTCCCTTTCTT-HHHHHHHHHTTTCEEEE
T ss_pred ccccChhhCCC-HHHHHHHHHHcCceEEe
Confidence 34464 67788888899999654
No 219
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=29.18 E-value=1.3e+02 Score=27.56 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=36.3
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEec-C-------CCChHHHHHhHhhhhhcCCeEEE-E-ecccc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-A-------HRTPDLMFSYASSAHERGIEIII-A-GAGGA 336 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s-~-------hr~~~~~~~~~~~~~~~g~~v~i-~-~ag~~ 336 (438)
++|++++ ......-....+.|+..|+++..-... . ..+++.+.+.++++...|+++++ . |+++.
T Consensus 147 ~rvgvlt--p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l~ 220 (273)
T 2xed_A 147 QRVALVT--PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQMP 220 (273)
T ss_dssp CEEEEEE--CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSSC
T ss_pred CeEEEEc--CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCcc
Confidence 4677885 222333445667888889885332211 1 22456667777776666777544 4 55433
No 220
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=28.95 E-value=1.6e+02 Score=26.07 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=46.5
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+...|..+..-.+. -.+++.+.++
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~ 69 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKD----------GFAV-AIA--DYNDATAKAVASEINQAGGHAVAVKVD-VSDRDQVFAA 69 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHH
Confidence 3667777655444444444331 2244 333 234566677777777767654433222 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 70 ~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 70 VEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 654432 268888888874
No 221
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=28.82 E-value=1.2e+02 Score=26.88 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh---cCCeEEEEecc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE---RGIEIIIAGAG 334 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~---~g~~v~i~~ag 334 (438)
.+.+.+.++.+.+...|..+..-.+. -..++.+.++++...+ ..++++|-.||
T Consensus 37 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~~g~id~lvnnAg 92 (260)
T 2qq5_A 37 RHLDTLRVVAQEAQSLGGQCVPVVCD-SSQESEVRSLFEQVDREQQGRLDVLVNNAY 92 (260)
T ss_dssp SCHHHHHHHHHHHHHHSSEEEEEECC-TTSHHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECC-CCCHHHHHHHHHHHHHhcCCCceEEEECCc
Confidence 45566667776776666554433222 3456667777665532 35788888884
No 222
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=28.66 E-value=88 Score=18.01 Aligned_cols=17 Identities=18% Similarity=0.622 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013661 405 LRARMQQYMEDMRDDVL 421 (438)
Q Consensus 405 ~~~~l~~~~~~~~~~~~ 421 (438)
++.+|+.++.+..+++-
T Consensus 2 lrkrlrkfrnkikeklk 18 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLK 18 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57889999887776643
No 223
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=28.31 E-value=1.7e+02 Score=25.15 Aligned_cols=94 Identities=12% Similarity=0.179 Sum_probs=49.2
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCC-----------CChHHHHHhHhhhhhcCCeEEEEec-cccC
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAH-----------RTPDLMFSYASSAHERGIEIIIAGA-GGAA 337 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~-~G~~~~~~v~s~h-----------r~~~~~~~~~~~~~~~g~~v~i~~a-g~~~ 337 (438)
++|++|+||.+.-..-..+++.+.+ +.-.++++++... ..|+.+.++.+.+++ .+.+|.++ .=..
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~--aD~~ii~tPeYn~ 80 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEH--SDAVLAITPEYNR 80 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHT--SSEEEEECCCBTT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHh--CCcEEEechhhcc
Confidence 4677888886654444444433332 2223555554432 346677777776654 66555544 2223
Q ss_pred ccccccc-------------CCCCCceEeccCCCCCCCChhh
Q 013661 338 HLPGMVA-------------ARTPLPVIGVPVRASALDGLDS 366 (438)
Q Consensus 338 ~l~~~i~-------------~~~~~pVi~~p~~~~~~~g~~~ 366 (438)
.+|+++. ....+||.-+-++.+...|..+
T Consensus 81 s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a 122 (190)
T 3u7r_A 81 SYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALA 122 (190)
T ss_dssp BCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHH
T ss_pred cCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHH
Confidence 3444321 2455787766554444556543
No 224
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=28.27 E-value=96 Score=28.02 Aligned_cols=84 Identities=10% Similarity=0.089 Sum_probs=49.0
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.++..|..+....+. -.+++.+.++
T Consensus 30 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~ 95 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELARR----------GAMV-IGT--ATTEAGAEGIGAAFKQAGLEGRGAVLN-VNDATAVDAL 95 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHHHHTCCCEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEEe-CCCHHHHHHH
Confidence 3556666654444444443331 2244 333 346677888888888888775544333 4556667776
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 96 ~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 96 VESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 655432 368899988874
No 225
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=28.09 E-value=1.8e+02 Score=25.81 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
..+.+.++++.+.++..|..+..-.+. -..++.+.+++++..+ ..++++|-.||.
T Consensus 36 ~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (258)
T 3oid_A 36 ARSKKAALETAEEIEKLGVKVLVVKAN-VGQPAKIKEMFQQIDETFGRLDVFVNNAAS 92 (258)
T ss_dssp SSCHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345677778887888877775544333 4556667776655432 357888888863
No 226
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=28.07 E-value=2e+02 Score=25.63 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=45.0
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.++. ...| ++. +.+...+.++.+.++..|..+..-.+. -.+++.+.++
T Consensus 33 ~vlITGasggIG~~la~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~v~~~ 98 (272)
T 1yb1_A 33 IVLITGAGHGIGRLTAYEFAKL----------KSKL-VLW--DINKHGLEETAAKCKGLGAKVHTFVVD-CSNREDIYSS 98 (272)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEE--EcCHHHHHHHHHHHHhcCCeEEEEEee-CCCHHHHHHH
Confidence 4667777655444444443331 1234 332 234556666666677666655443333 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++++.+ .+++++|-.||.
T Consensus 99 ~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 99 AKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHCCCCcEEEECCCc
Confidence 654422 257788877764
No 227
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=28.05 E-value=1.7e+02 Score=26.22 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=46.6
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC---cEEEEEecCCCChHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLM 314 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~---~~~~~v~s~hr~~~~~ 314 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.++..|. .+....+. -.+++.+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~~D-v~~~~~v 78 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVAA----------GASV-MIV--GRNPDKLAGAVQELEALGANGGAIRYEPTD-ITNEDET 78 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHTTCCSSCEEEEEECC-TTSHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHHhCCCCceEEEEeCC-CCCHHHH
Confidence 3666776655444444443331 2244 333 3456777777778877765 33332222 3456666
Q ss_pred HHhHhhhhh--cCCeEEEEeccc
Q 013661 315 FSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 315 ~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+++++..+ .+++++|-.||.
T Consensus 79 ~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 79 ARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 666655432 367888888874
No 228
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=27.84 E-value=95 Score=28.13 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=44.3
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+.-=-...+.+.+.. ...| ++.+. +.+.+.++.+.+...|..+..-.+. -..++.+.+++
T Consensus 36 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~~~~~~ 101 (275)
T 4imr_A 36 ALVTGSSRGIGAAIAEGLAGA----------GAHV-ILHGV--KPGSTAAVQQRIIASGGTAQELAGD-LSEAGAGTDLI 101 (275)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEEES--STTTTHHHHHHHHHTTCCEEEEECC-TTSTTHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEEcC--CHHHHHHHHHHHHhcCCeEEEEEec-CCCHHHHHHHH
Confidence 556666554333434433331 2344 34333 3345556666667777665443333 34455566666
Q ss_pred hhhhh-cCCeEEEEeccc
Q 013661 319 SSAHE-RGIEIIIAGAGG 335 (438)
Q Consensus 319 ~~~~~-~g~~v~i~~ag~ 335 (438)
+...+ .+++++|-.||.
T Consensus 102 ~~~~~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 102 ERAEAIAPVDILVINASA 119 (275)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 55433 468888888874
No 229
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=27.82 E-value=1.4e+02 Score=27.29 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=47.0
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.++..|..+..-.+. -..++.+.++
T Consensus 36 ~vlVTGas~gIG~aia~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 101 (291)
T 3cxt_A 36 IALVTGASYGIGFAIASAYAKA----------GATI-VFN--DINQELVDRGMAAYKAAGINAHGYVCD-VTDEDGIQAM 101 (291)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHHHTTCCCEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCeEEEEEec-CCCHHHHHHH
Confidence 4677777665444444444331 2244 333 245566777777777777654433332 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++.+.+ ..++++|-.||.
T Consensus 102 ~~~~~~~~g~iD~lvnnAg~ 121 (291)
T 3cxt_A 102 VAQIESEVGIIDILVNNAGI 121 (291)
T ss_dssp HHHHHHHTCCCCEEEECCCC
T ss_pred HHHHHHHcCCCcEEEECCCc
Confidence 654322 248888888874
No 230
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.71 E-value=3.3e+02 Score=24.24 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCeEEEEEc-----cCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc-cCccc
Q 013661 270 LPRIGIIMG-----SDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLP 340 (438)
Q Consensus 270 ~~~v~ii~g-----s~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~ 340 (438)
...|+++.. ..++ ...+..+.+.+++.|+.+.. ...+..++.-.++++.+..++++-+|..... ...+.
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~ 84 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQT--TVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPIK 84 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEE--CCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHH
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEE--EcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChHHH
Confidence 456777762 2222 23455566777788877643 3556666666667777777788866654321 11111
Q ss_pred ccccCCCCCceEec
Q 013661 341 GMVAARTPLPVIGV 354 (438)
Q Consensus 341 ~~i~~~~~~pVi~~ 354 (438)
..+. ....|||.+
T Consensus 85 ~~l~-~~~iPvV~i 97 (295)
T 3hcw_A 85 QMLI-DESMPFIVI 97 (295)
T ss_dssp HHHH-HTTCCEEEE
T ss_pred HHHH-hCCCCEEEE
Confidence 2121 235677765
No 231
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=27.42 E-value=1.6e+02 Score=26.38 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=45.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHH-HHcCCcEEEEEecCCCChHHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l-~~~G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+ +..|..+..-.+. -..++.+.+
T Consensus 23 ~~lVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~v~~ 88 (267)
T 1vl8_A 23 VALVTGGSRGLGFGIAQGLAEA----------GCSV-VVA--SRNLEEASEAAQKLTEKYGVETMAFRCD-VSNYEEVKK 88 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHHCCCEEEEECC-TTCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHH
Confidence 3667777665444444444431 2244 333 23456666666666 5557665433333 345666666
Q ss_pred hHhhhhh--cCCeEEEEeccc
Q 013661 317 YASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~ 335 (438)
++++..+ .+++++|-.||.
T Consensus 89 ~~~~~~~~~g~iD~lvnnAg~ 109 (267)
T 1vl8_A 89 LLEAVKEKFGKLDTVVNAAGI 109 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 6654422 368888888874
No 232
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=27.38 E-value=2.2e+02 Score=25.56 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=50.0
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.++.+.++++.+.+...|..+..-.+. -.+++.+.++
T Consensus 31 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~ 97 (280)
T 4da9_A 31 VAIVTGGRRGIGLGIARALAAS----------GFDI-AIT-GIGDAEGVAPVIAELSGLGARVIFLRAD-LADLSSHQAT 97 (280)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE-ESCCHHHHHHHHHHHHHTTCCEEEEECC-TTSGGGHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHC----------CCeE-EEE-eCCCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHH
Confidence 3567777655444444444331 2344 333 2346677888888888888776544333 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++++.+ .+++++|-.||.
T Consensus 98 ~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 98 VDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 655433 368899988875
No 233
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=27.04 E-value=1.8e+02 Score=25.39 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=46.6
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.++. ...| ++.+ .+.+...++.+.++..|.++..-.+. -.+++.+.+.
T Consensus 15 ~vlItGasggiG~~la~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~ 80 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEA----------GARV-IIAD--LDEAMATKAVEDLRMEGHDVSSVVMD-VTNTESVQNA 80 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHH
Confidence 4677777765444444444432 2244 3322 34455666666677667665443333 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++++.+ .+++++|-.||.
T Consensus 81 ~~~~~~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 81 VRSVHEQEGRVDILVACAGI 100 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 654322 368888888874
No 234
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=26.96 E-value=1e+02 Score=28.14 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccc--------ccCCCCCceEeccC
Q 013661 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM--------VAARTPLPVIGVPV 356 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~--------i~~~~~~pVi~~p~ 356 (438)
.++++.+.+...|++++..+.. ++.|. ..+++.+++.+++.++.+..+...+... +......||+-||.
T Consensus 74 ~l~~~~~~~~~~~v~~~~~~~~-~g~~~--~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 74 WIKQQARYYLEAGIQIDIKVIW-HNRPY--EAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEE-CSCHH--HHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHHHHhhcCCeEEEEEEe-cCChH--HHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecC
Confidence 4445555556778888777642 34443 3344444566788777665333333333 22346688888876
Q ss_pred C
Q 013661 357 R 357 (438)
Q Consensus 357 ~ 357 (438)
.
T Consensus 151 ~ 151 (319)
T 3olq_A 151 K 151 (319)
T ss_dssp S
T ss_pred c
Confidence 4
No 235
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=26.55 E-value=1.7e+02 Score=25.90 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=43.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCChHHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~-G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++++|.+.-=-...+.+.++. ...| ++.+ .+.+.++++.+.+... |..+..-.+. -..++.+.+
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~D-~~~~~~~~~ 74 (263)
T 3ai3_A 9 VAVITGSSSGIGLAIAEGFAKE----------GAHI-VLVA--RQVDRLHEAARSLKEKFGVRVLEVAVD-VATPEGVDA 74 (263)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHHHCCCEEEEECC-TTSHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEEc--CCHHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHH
Confidence 3566776655444444443331 2234 3332 3445566666556544 6554433222 345666666
Q ss_pred hHhhhhh--cCCeEEEEeccc
Q 013661 317 YASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~ 335 (438)
++++..+ .+++++|-.||.
T Consensus 75 ~~~~~~~~~g~id~lv~~Ag~ 95 (263)
T 3ai3_A 75 VVESVRSSFGGADILVNNAGT 95 (263)
T ss_dssp HHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 6654422 268888888874
No 236
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=26.52 E-value=2.3e+02 Score=27.78 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=39.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.++..++.....+.+++..|.+.|+.+++. +..-..+.+-++.+...|++..+++
T Consensus 367 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~----~~~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 367 TQVLVASAQKKLLEERLKLVSELWDAGIKAELL----YKKNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp CCEEEECSSSSCHHHHHHHHHHHHHTTCCEECC----SCSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 356666667777888999999999999998775 3211124444455677799955544
No 237
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=26.52 E-value=1.6e+02 Score=24.99 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=33.4
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE--------------------EEEecCCCChHHHHHhHhhhhhcCCeEEE
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE--------------------VRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~--------------------~~v~s~hr~~~~~~~~~~~~~~~g~~v~i 330 (438)
++.|..+....+......|..+|+++. +-++|..+...++.+.++.+++.|++++.
T Consensus 49 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~ 124 (201)
T 3fxa_A 49 VVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIG 124 (201)
T ss_dssp EEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEE
T ss_pred EEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 555554456666666666666776643 33445555555566666666666776543
No 238
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=26.48 E-value=1.7e+02 Score=26.06 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~ 315 (438)
.++++|.+.-=-..-+.+.++. ...| ++. +.+.+.+.++.+.+... |..+..-.+. -..++.+.
T Consensus 15 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~ 80 (267)
T 1iy8_A 15 VVLITGGGSGLGRATAVRLAAE----------GAKL-SLV--DVSSEGLEASKAAVLETAPDAEVLTTVAD-VSDEAQVE 80 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHCTTCCEEEEECC-TTSHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhhcCCceEEEEEcc-CCCHHHHH
Confidence 3667777665444444444331 2244 332 23455666666666554 5554433222 34566666
Q ss_pred HhHhhhhh--cCCeEEEEecccc
Q 013661 316 SYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 316 ~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++++..+ .+++++|-.||..
T Consensus 81 ~~~~~~~~~~g~id~lv~nAg~~ 103 (267)
T 1iy8_A 81 AYVTATTERFGRIDGFFNNAGIE 103 (267)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCcC
Confidence 66655422 3688888888743
No 239
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=26.37 E-value=32 Score=36.08 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=14.8
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHHH-HHHHHHhcCCCCcEEEeeccCC
Q 013661 19 PLMVKSKRLAYDGRGNAVAKSEEEL-SSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~el-~~~~~~~~~~~~~~lvEe~I~g 65 (438)
..|+||..+- .|.||.+.....+. ++........+ +++|+|++-
T Consensus 544 ~yV~KPi~gR-eG~nV~I~~~~~~~~~~~~g~y~~~~--~IyQe~~~l 588 (652)
T 2vob_A 544 GYAKKPIVGR-VGSNVIITSGDGVVHAESGGKYGKRN--MIYQQLFEL 588 (652)
T ss_dssp CEEEEECC----------------------------C--EEEEECCC-
T ss_pred CeEeccCCCC-CCCCEEEEcCCchhhhhcccccCCCC--eEEEecccC
Confidence 4899997754 89999998653332 22212222334 999999983
No 240
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=26.20 E-value=2e+02 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+.+.++.+.+...|..+....+. -.+++.+.++++++.+ .+++++|-.||..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 91 SPEELKETVRLVEEQGRRIIARQAD-VRDLASLQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4677888888888888776554443 4567777777765432 3688999888753
No 241
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.12 E-value=1.7e+02 Score=25.99 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
++++++.- .+-.+.+.. ..+-+|+++.... -.++++..+.++++++.|++|+|..
T Consensus 107 ~kIavVg~-~~~~~~~~~---i~~ll~~~i~~~~---~~~~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 107 SSIGVVTY-QETIPALVA---FQKTFNLRLDQRS---YITEEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp SCEEEEEE-SSCCHHHHH---HHHHHTCCEEEEE---ESSHHHHHHHHHHHHHTTCCEEEES
T ss_pred CcEEEEeC-chhhhHHHH---HHHHhCCceEEEE---eCCHHHHHHHHHHHHHCCCCEEECC
Confidence 45666643 333343333 3355788876653 4578889999999999999998863
No 242
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=26.07 E-value=3.5e+02 Score=27.85 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=58.4
Q ss_pred CCeEEEEEccCCC----HHHHH--------HHHHHHHH-----cCCcEEEEEec-CCCChHHHHHhHhhhhhcCCeEEEE
Q 013661 270 LPRIGIIMGSDSD----LPVMK--------DAAKILTM-----FSVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 270 ~~~v~ii~gs~sD----~~~~~--------~~~~~l~~-----~G~~~~~~v~s-~hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.++|+|...++.- .+.++ ++.+.+.+ .|.++++..+. .-.+.++..+..+.+++.+++++++
T Consensus 11 ~~kiGi~p~~dgr~~~~re~l~~~~~~~a~~~~~~l~~~l~~~~g~~vevV~~~~~I~~~~eA~~~ae~F~~~~vd~ii~ 90 (595)
T 3a9s_A 11 LPKIGIRPTIDGRRKGVRESLEETTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEKFAREGVGVSIT 90 (595)
T ss_dssp CCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHHHTEEEEEE
T ss_pred CceEEEEeccccccccchhchhHHHHHHHHHHHHHHHHHHhhccCCCeEEEECCCeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4577777765544 22222 34444433 23344444433 4456666667777777778886665
Q ss_pred eccc--cCcccccccCCCCCceEeccCCCCCCCChhhHHHhhhC--CCCCceEEEE
Q 013661 332 GAGG--AAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQM--PRGVPVATVA 383 (438)
Q Consensus 332 ~ag~--~~~l~~~i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~--~~g~p~~tv~ 383 (438)
..+. -++..-..+.+.++.|.|.+... ..|...|.+.++. -.|+|..++-
T Consensus 91 ~~~~w~yg~et~~~~~~~Pvllw~~~~~e--~pG~~gl~a~~~~l~q~Gip~~~I~ 144 (595)
T 3a9s_A 91 VTPCWCYGTETMDMDPHIPKAVWGFNGTE--RPGAVYLAAVLAGYNQKGLPAFGIY 144 (595)
T ss_dssp EESSCCCGGGTCCCCTTSCEEEEECCCSS--SCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EeccCCCHHHHHhhcCCCCEEEEeCCCCC--CcchhHHHHHHHHHHHcCCceEEEe
Confidence 4422 11111111223444444555422 2367666666555 7899977663
No 243
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=25.99 E-value=1.6e+02 Score=25.80 Aligned_cols=53 Identities=6% Similarity=0.075 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.++++.+.+...|..+..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 92 (246)
T 2uvd_A 38 NEQKANEVVDEIKKLGSDAIAVRAD-VANAEDVTNMVKQTVDVFGQVDILVNNAGV 92 (246)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5566777777777767655433332 3456666666654422 368888888874
No 244
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=25.98 E-value=1.4e+02 Score=26.76 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=45.4
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHH-cCCcEEEEEecCCCChHHHHHh
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~-~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+.. .|..+..-.+. -.+++.+.++
T Consensus 23 vlVTGas~gIG~aia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~v~~~ 88 (266)
T 4egf_A 23 ALITGATKGIGADIARAFAAA----------GARL-VLS--GRDVSELDAARRALGEQFGTDVHTVAID-LAEPDAPAEL 88 (266)
T ss_dssp EEETTTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHHCCCEEEEECC-TTSTTHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHH
Confidence 566676654333334433331 2244 333 2456677777766655 66665443333 3445556666
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 89 ~~~~~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 89 ARRAAEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHHHHHTSCSEEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 554432 2688888888743
No 245
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=25.96 E-value=1.8e+02 Score=26.13 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=44.0
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.++++.+.+...| .+..-.+. -..++.+.++
T Consensus 31 ~vlVTGas~gIG~aia~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~-~~~~~~~D-v~d~~~v~~~ 95 (276)
T 2b4q_A 31 IALVTGGSRGIGQMIAQGLLEA----------GARV-FIC--ARDAEACADTATRLSAYG-DCQAIPAD-LSSEAGARRL 95 (276)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--CSCHHHHHHHHHHHTTSS-CEEECCCC-TTSHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcC-ceEEEEee-CCCHHHHHHH
Confidence 3677777655444444444331 2234 333 345566666666666555 43322111 2456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++++.+ .+++++|-.||.
T Consensus 96 ~~~~~~~~g~iD~lvnnAg~ 115 (276)
T 2b4q_A 96 AQALGELSARLDILVNNAGT 115 (276)
T ss_dssp HHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 654432 368888888874
No 246
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=25.95 E-value=1.9e+02 Score=25.87 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+.++++.+.+...|..+....+ =-.+++.+.+++++..+ .+++++|-.||..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 61 SPEDLDETARLVEDQGRKALTRVL-DVRDDAALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEEC-CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEc-CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 567777777777777766554433 26667777776655432 2578888777643
No 247
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=25.92 E-value=3.4e+02 Score=24.59 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCeEEEEEccCCCHHHH----HHHHHHHHHc-CCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 270 LPRIGIIMGSDSDLPVM----KDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~----~~~~~~l~~~-G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
...|+++... ++ ++. ..+.+.+++. |+.+.. ...+..++...+.++.+...+++.+|...
T Consensus 6 ~~~Igvi~~~-~~-~~~~~~~~gi~~~a~~~~g~~l~i--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 70 (325)
T 2x7x_A 6 HFRIGVAQCS-DD-SWRHKMNDEILREAMFYNGVSVEI--RSAGDDNSKQAEDVHYFMDEGVDLLIISA 70 (325)
T ss_dssp CCEEEEEESC-CS-HHHHHHHHHHHHHHTTSSSCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CeEEEEEecC-CC-HHHHHHHHHHHHHHHHcCCcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3466666654 33 332 3344455566 766543 34566676666667666667788666543
No 248
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=25.83 E-value=1.7e+02 Score=27.41 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=62.0
Q ss_pred CCeEEEEEccCC-CHHHHHHHHHHHHHcCCcEEEEEec------CCCChHH-HHHhHhhhhhcCCeEEEEecccc--Ccc
Q 013661 270 LPRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPDL-MFSYASSAHERGIEIIIAGAGGA--AHL 339 (438)
Q Consensus 270 ~~~v~ii~gs~s-D~~~~~~~~~~l~~~G~~~~~~v~s------~hr~~~~-~~~~~~~~~~~g~~v~i~~ag~~--~~l 339 (438)
...|+|++-|.. +...++.+.+.|+++|+++...-.. .-+++++ .+++.+-+.+..++++++.-|+. +.|
T Consensus 17 Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~rl 96 (311)
T 1zl0_A 17 DGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCGQL 96 (311)
T ss_dssp CSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGGGG
T ss_pred cCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCHHHH
Confidence 347888876543 5677888899999999998753100 1234443 44455556777889888888754 334
Q ss_pred ccc-----ccCCCCCceEeccCCCCCCCChhhHHHhhhCCCCC
Q 013661 340 PGM-----VAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGV 377 (438)
Q Consensus 340 ~~~-----i~~~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~ 377 (438)
.+. |+....++++| ++...+|+..+.-- |+
T Consensus 97 Lp~LD~~~i~~a~PK~~iG-------ySDiTaL~~al~~~-G~ 131 (311)
T 1zl0_A 97 LPGLDWGRLQAASPRPLIG-------FSDISVLLSAFHRH-GL 131 (311)
T ss_dssp TTTCCHHHHHHSCCCCEEE-------CGGGHHHHHHHHHT-TC
T ss_pred hhccchhhhhccCCCEEEE-------EchhHHHHHHHHHc-CC
Confidence 333 32214666766 33567777666555 74
No 249
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=25.79 E-value=1.3e+02 Score=29.15 Aligned_cols=62 Identities=24% Similarity=0.287 Sum_probs=37.9
Q ss_pred HHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEeccCC-C-CCC--CChhhHHHhhhCCCCCc-eEEEEeCCc
Q 013661 313 LMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR-A-SAL--DGLDSLLSIVQMPRGVP-VATVAINNA 387 (438)
Q Consensus 313 ~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p~~-~-~~~--~g~~~l~s~~~~~~g~p-~~tv~~~~~ 387 (438)
++.+++.++++.|- .+.|+| ..-+-|||+. + .-+ +.+|+.|+.+-|. || |=-|.|+.+
T Consensus 199 ~m~~~I~~ak~~GD-----------S~GGvv----evv~~gvP~GLG~pvf~d~kLda~LA~AlmS--I~AvKGvEiG~G 261 (388)
T 1qxo_A 199 EIKDYIDQIKRDGD-----------TIGGVV----ETVVGGVPVGLGSYVQWDRKLDARLAQAVVS--INAFKGVEFGLG 261 (388)
T ss_dssp HHHHHHHHHHHTTC-----------CBCEEE----EEEEESCCTTCSCSSSGGGCHHHHHHHHHHT--STTEEEEEETTG
T ss_pred HHHHHHHHHHHhCC-----------CCceEE----EEEEecCCCCcCCcccccccchHHHHHHhcC--cCceeEEEECcc
Confidence 45556666655442 333333 3345677775 2 224 6899999877774 33 458899988
Q ss_pred chHH
Q 013661 388 TNAG 391 (438)
Q Consensus 388 ~~Aa 391 (438)
+.+|
T Consensus 262 F~~a 265 (388)
T 1qxo_A 262 FEAG 265 (388)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 8755
No 250
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=25.74 E-value=1.5e+02 Score=23.11 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCcE---EEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccc
Q 013661 285 VMKDAAKILTMFSVPH---EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 285 ~~~~~~~~l~~~G~~~---~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
.+.++.+.+...|+++ +..+. ++.|. ..+++.+++.+++.++.++-+...+..+
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dliV~G~~~~~~~~~~ 127 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVK--GGRPS--RTIVRFARKRECDLVVIGAQGTNGDKSL 127 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE--ESCHH--HHHHHHHHHTTCSEEEECSSCTTCCSCC
T ss_pred HHHHHHHHHHhcCCCccceEEEEe--cCCHH--HHHHHHHHHhCCCEEEEeCCCCccccce
Confidence 3445556667788887 66554 45553 3455556777899888776443344433
No 251
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=25.63 E-value=1.6e+02 Score=26.05 Aligned_cols=84 Identities=7% Similarity=0.039 Sum_probs=45.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.++. ...| ++. +.+.+.++++.+.+...|..+....+. -..++.+.++
T Consensus 16 ~vlITGasggiG~~la~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 81 (266)
T 1xq1_A 16 TVLVTGGTKGIGHAIVEEFAGF----------GAVI-HTC--ARNEYELNECLSKWQKKGFQVTGSVCD-ASLRPEREKL 81 (266)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCeeEEEECC-CCCHHHHHHH
Confidence 4667777665444444444431 1234 222 234556666666676667665544333 3345556666
Q ss_pred Hhhhhh---cCCeEEEEeccc
Q 013661 318 ASSAHE---RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~---~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~ 102 (266)
T 1xq1_A 82 MQTVSSMFGGKLDILINNLGA 102 (266)
T ss_dssp HHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHhCCCCcEEEECCCC
Confidence 544322 468888888864
No 252
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=25.28 E-value=2.6e+02 Score=24.87 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=43.1
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--C
Q 013661 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--A 345 (438)
Q Consensus 271 ~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~ 345 (438)
+.|+++.-..++ ......+.+.++++|+ +++.+...+..++...+.++.+...+++.+|............+. .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 81 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 81 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHH
Confidence 345566543333 1233444556677786 233344556677766667777667788866654422211222221 1
Q ss_pred CCCCceEec
Q 013661 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVi~~ 354 (438)
....|||.+
T Consensus 82 ~~~iPvV~~ 90 (309)
T 2fvy_A 82 GQNVPVVFF 90 (309)
T ss_dssp TTTCCEEEE
T ss_pred HCCCcEEEe
Confidence 234677765
No 253
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=25.19 E-value=2.3e+02 Score=21.61 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
+.=+.+..+...|+++|++++..-+..+..+....+.+
T Consensus 25 ~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l 62 (114)
T 3h8q_A 25 SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVL 62 (114)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHH
Confidence 45699999999999999998766555444444444444
No 254
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=24.96 E-value=1.8e+02 Score=25.67 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=45.4
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-..-+.+.+.. ...| ++...+.+...+.+..+.+...|..+..-.+. -..++.+.++
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~ 71 (258)
T 3a28_C 4 VAMVTGGAQGIGRGISEKLAAD----------GFDI-AVADLPQQEEQAAETIKLIEAADQKAVFVGLD-VTDKANFDSA 71 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH----------TCEE-EEEECGGGHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEEeCCcchHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHH
Confidence 3566776655444444444332 1234 33333333222666666666666655433222 3456666666
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 72 ~~~~~~~~g~iD~lv~nAg~~ 92 (258)
T 3a28_C 72 IDEAAEKLGGFDVLVNNAGIA 92 (258)
T ss_dssp HHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 654322 2688888888743
No 255
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=24.83 E-value=1.6e+02 Score=28.00 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=26.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC-hHHHHHhHhhhhhcCCeE
Q 013661 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEI 328 (438)
Q Consensus 279 s~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~-~~~~~~~~~~~~~~g~~v 328 (438)
+.+|.+.+.++.+.+++.|+.+...+..++++ |+.+.++.+.+.+-|+.+
T Consensus 115 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~ 165 (345)
T 1nvm_A 115 HCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATC 165 (345)
T ss_dssp ETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSE
T ss_pred eccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCE
Confidence 44445555555555556666555555444444 344555555555555553
No 256
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.66 E-value=3.6e+02 Score=23.67 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCc-EEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccC
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~-~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
...|+++..+.++ ......+.+.+++.|+. +.. ...+..++.-.++++.+..++++-+|... ..+..+ .
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~~--~ 82 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALIS--FSTNSDVKKYQNAIINFENNNVDGIITSA---FTIPPN--F 82 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCCTT--C
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHHHH--H
Confidence 4678888765444 23344556677888987 544 46677888777788888888999666554 222222 1
Q ss_pred CCCCceEeccCCCCCCCChhhHHHhhhCCCCCceEEEEeCCcchHHHHHHHHHc
Q 013661 346 RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLG 399 (438)
Q Consensus 346 ~~~~pVi~~p~~~~~~~g~~~l~s~~~~~~g~p~~tv~~~~~~~Aa~~a~~il~ 399 (438)
....|||.+-... . ++.++ .|..|+. .++..|++.|.
T Consensus 83 ~~~iPvV~~~~~~--~-------------~~~~~-~V~~D~~-~~g~~a~~~L~ 119 (277)
T 3hs3_A 83 HLNTPLVMYDSAN--I-------------NDDIV-RIVSNNT-KGGKESIKLLS 119 (277)
T ss_dssp CCSSCEEEESCCC--C-------------CSSSE-EEEECHH-HHHHHHHHTSC
T ss_pred hCCCCEEEEcccc--c-------------CCCCE-EEEEChH-HHHHHHHHHHH
Confidence 2356777652210 1 11125 6665553 56666666654
No 257
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.60 E-value=1.9e+02 Score=25.66 Aligned_cols=81 Identities=7% Similarity=-0.044 Sum_probs=46.4
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc-cCcccccccC
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~ 345 (438)
...|+++....++ ......+.+.+++.|+.+... .....++...++++.+...+++-+|..... .......+.
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~- 84 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLC--NTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII- 84 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH-
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh-
Confidence 3567777654333 233445556677888876543 456677766677777777788866654322 111112223
Q ss_pred CCCCceEec
Q 013661 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVi~~ 354 (438)
...|||.+
T Consensus 85 -~~iPvV~~ 92 (285)
T 3c3k_A 85 -GAFPWVQC 92 (285)
T ss_dssp -TTSSEEEE
T ss_pred -cCCCEEEE
Confidence 45677765
No 258
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=24.58 E-value=1.3e+02 Score=28.87 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=25.1
Q ss_pred ccCC--CCCCCChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 354 VPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 354 ~p~~--~~~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
||.. +.-++.+|+.|+.+-|. || |=-|.|+.++.+|
T Consensus 217 vP~GLG~pvfdkLda~LA~A~ms--I~AvKGvEiG~GF~~a 255 (365)
T 1um0_A 217 LPIGLGQGLYAKLDAKIAEAMMG--LNGVKAVEIGKGVESS 255 (365)
T ss_dssp CCSCCSBTTTBCHHHHHHHHHHT--STTEEEEEETTGGGGG
T ss_pred CCCCCCCcccccchHHHHHHhcC--ccceeeEEeccchhhh
Confidence 5653 23377889999877774 44 5588999888765
No 259
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=24.38 E-value=1.2e+02 Score=29.67 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=27.9
Q ss_pred CCceEeccCC--CCCC--CChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 348 PLPVIGVPVR--ASAL--DGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 348 ~~pVi~~p~~--~~~~--~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
..-+-|||+. +.-+ +.+|+.|+..-|. || |=-|.|+.++.+|
T Consensus 227 e~v~~gvP~GLG~pvf~d~kLda~LA~A~mS--I~AvKGvEiG~GF~~a 273 (398)
T 4ecd_A 227 EVLAYGVPAGIGTYVESDRRLDAALASAIMG--IQAFKGVEIGDGFLAA 273 (398)
T ss_dssp EEEEESCCSCCBCSSSSTTSHHHHHHHHHHT--STTEEEEEETTTTTC-
T ss_pred EEEEEcCCCCCCCCcccccChhHHHHHHhcC--cCceeeEEecchHhhh
Confidence 3445678875 3335 8899999777663 33 5588998887754
No 260
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=24.29 E-value=1.6e+02 Score=27.21 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=47.2
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC--cEEEEEecCCCChHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV--PHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~--~~~~~v~s~hr~~~~~~ 315 (438)
.|+++|.+.-=....+.+.+.. ...| +++ +.+.+.++++.+.+...|. .+..-.+. -..++.+.
T Consensus 10 ~vlVTGas~gIG~~la~~l~~~----------G~~V-v~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-l~~~~~v~ 75 (319)
T 3ioy_A 10 TAFVTGGANGVGIGLVRQLLNQ----------GCKV-AIA--DIRQDSIDKALATLEAEGSGPEVMGVQLD-VASREGFK 75 (319)
T ss_dssp EEEEETTTSTHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHTCGGGEEEEECC-TTCHHHHH
T ss_pred EEEEcCCchHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCCCeEEEEECC-CCCHHHHH
Confidence 4667776655444444444431 2234 333 3456777777777777665 44333222 34566666
Q ss_pred HhHhhhhh--cCCeEEEEeccc
Q 013661 316 SYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 316 ~~~~~~~~--~g~~v~i~~ag~ 335 (438)
++++.+.+ .+++++|-.||.
T Consensus 76 ~~~~~~~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 76 MAADEVEARFGPVSILCNNAGV 97 (319)
T ss_dssp HHHHHHHHHTCCEEEEEECCCC
T ss_pred HHHHHHHHhCCCCCEEEECCCc
Confidence 66655433 357788888874
No 261
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=24.24 E-value=2.2e+02 Score=25.45 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+...+.+..+.+...|..+....+. -.+++.+.+++++..+ ..++++|-.||.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 57 SPDDLSETVRLVEAANRRIVAAVVD-TRDFDRLRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666777777777777665544332 6667777666655422 357788877764
No 262
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.17 E-value=1.7e+02 Score=26.74 Aligned_cols=64 Identities=8% Similarity=0.121 Sum_probs=49.0
Q ss_pred HHHHcCCcEEEEE-ec--CCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEecc
Q 013661 292 ILTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 292 ~l~~~G~~~~~~v-~s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p 355 (438)
..+.+|++..... .+ .--+|.++.++++.+++++++++..-...+..+...|+..+..+|+.+.
T Consensus 190 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~ 256 (284)
T 3cx3_A 190 LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLN 256 (284)
T ss_dssp HHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEECC
T ss_pred HHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEec
Confidence 3477999965443 22 3456888999998889999999988877777888888888888887663
No 263
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=24.16 E-value=1.2e+02 Score=26.59 Aligned_cols=55 Identities=5% Similarity=0.020 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHcCC-cEEEEEecC-CCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSV-PHEVRIVSA-HRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~-~~~~~v~s~-hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.++..|. ......... ..+++.+.++.++..+ .+++++|-.||.
T Consensus 46 r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 46 RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp SCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 455667777777766653 222222221 1445555555554432 257777777764
No 264
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=23.92 E-value=3.1e+02 Score=26.62 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=40.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..++.....+.++++.|...|+.+++... .+++.. -++.++..|++..+++
T Consensus 333 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~--~~~~~~---~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 333 KSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM--ERGLSA---QLKYASAIGADFAVIF 389 (434)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCS--CCCHHH---HHHHHHHTTCSEEEEE
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecC--CCCHHH---HHHHHHHCCCCEEEEE
Confidence 45666666667789999999999999999877631 234443 4445577899966554
No 265
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=23.63 E-value=1.8e+02 Score=26.13 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHcCC---cEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 281 SDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~---~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+.++++.+.+...|. .+..-.+. -..++.+.+++++..+ .+++++|-.||..
T Consensus 38 r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 38 RSSERLEETRQIILKSGVSEKQVNSVVAD-VTTEDGQDQIINSTLKQFGKIDVLVNNAGAA 97 (280)
T ss_dssp SCHHHHHHHHHHHHTTTCCGGGEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEEec-CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 445666666666666555 44333222 3456666666654322 2588888888743
No 266
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=23.17 E-value=71 Score=25.05 Aligned_cols=55 Identities=11% Similarity=-0.051 Sum_probs=28.2
Q ss_pred HcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEecc
Q 013661 295 MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 295 ~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~p 355 (438)
..| +++..+. ++.|. ..+++.+++.+++.++.++-+. ....-+..+...||+-||
T Consensus 84 ~~~-~~~~~~~--~g~~~--~~I~~~a~~~~~dliV~G~~g~-sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 84 STE-IPGVEYR--IGPLS--EEVKKFVEGKGYELVVWACYPS-AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp CCC-CCCEEEE--CSCHH--HHHHHHHTTSCCSEEEECSCCG-GGTHHHHHHSSSEEEECC
T ss_pred cCC-cceEEEE--cCCHH--HHHHHHHHhcCCCEEEEeCCCC-chHHHHHHhCCCceEeeC
Confidence 344 5544433 45553 3345555677888777765322 333333334556666554
No 267
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=23.15 E-value=2.5e+02 Score=25.02 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
++.+.++++.+.++..|..+..-.+. -.+++.+.+++++..+ ..++++|-.||.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 106 (270)
T 3is3_A 51 NSTKDAEKVVSEIKALGSDAIAIKAD-IRQVPEIVKLFDQAVAHFGHLDIAVSNSGV 106 (270)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45567777788888888775544333 4556667777665432 267888887774
No 268
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=23.12 E-value=2.3e+02 Score=25.35 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=14.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEE
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE 301 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~ 301 (438)
+++++|+|+.+ -....+++.|.+.|..+.
T Consensus 11 ~k~~lVTGas~--gIG~aia~~la~~G~~V~ 39 (286)
T 3uve_A 11 GKVAFVTGAAR--GQGRSHAVRLAQEGADII 39 (286)
T ss_dssp TCEEEEESTTS--HHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCCCeEE
Confidence 34455555543 344555555555555543
No 269
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=23.09 E-value=2.5e+02 Score=24.25 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.+...|..+..-.+. -.+++.+.++++...+ .+++++|-.||.
T Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 41 RTAADLEKISLECRAEGALTDTITAD-ISDMADVRRLTTHIVERYGHIDCLVNNAGV 96 (244)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEEECC-TTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHccCCeeeEEEec-CCCHHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence 34566666666666666554443333 3456666666655432 257888888874
No 270
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=23.05 E-value=1.5e+02 Score=27.12 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=44.1
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcC-CcEEEEEecCCCChHHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G-~~~~~~v~s~hr~~~~~~~ 316 (438)
.++++|.+.-=-...+.+.+.. ...| ++.+ .+.+.++++.+.+...| -.+..-.+. -..++.+.+
T Consensus 43 ~vlVTGas~GIG~aia~~la~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~d~~~v~~ 108 (293)
T 3rih_A 43 SVLVTGGTKGIGRGIATVFARA----------GANV-AVAA--RSPRELSSVTAELGELGAGNVIGVRLD-VSDPGSCAD 108 (293)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEE-EEEE--SSGGGGHHHHHHHTTSSSSCEEEEECC-TTCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEEE--CCHHHHHHHHHHHHhhCCCcEEEEEEe-CCCHHHHHH
Confidence 3566676655444444443331 2244 3332 34455667777777666 343332222 345666666
Q ss_pred hHhhhhh--cCCeEEEEeccc
Q 013661 317 YASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~ 335 (438)
+++++.+ .+++++|-.||.
T Consensus 109 ~~~~~~~~~g~iD~lvnnAg~ 129 (293)
T 3rih_A 109 AARTVVDAFGALDVVCANAGI 129 (293)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 6654422 367888888874
No 271
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=23.01 E-value=1e+02 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=19.5
Q ss_pred HHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEec
Q 013661 314 MFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 354 (438)
+.+..+.+++.|+++++.+...+....+-+......|||++
T Consensus 88 l~~~~~~L~~~Gad~IVIaCNTah~~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 88 LERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHTTCSEEECSCSGGGGGHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHCCCCEEcc
Confidence 44444555566666544333222112333444456666664
No 272
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=22.81 E-value=3.4e+02 Score=22.80 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=37.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC--hHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--PDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~--~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+++.|++ .....+..+.+.|...|+++..- |+. +++-.+.++.+++..++|+++-
T Consensus 55 ~~~lVF~---~~~~~~~~l~~~L~~~g~~~~~l----hg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 55 PPVLIFA---EKKADVDAIHEYLLLKGVEAVAI----HGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp SCEEEEC---SCHHHHHHHHHHHHHHTCCEEEE----CTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCEEEEE---CCHHHHHHHHHHHHHcCCcEEEE----eCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 3454554 44688999999999999986554 554 4444556667777667787763
No 273
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=22.76 E-value=6.7e+02 Score=26.16 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=65.0
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC------
Q 013661 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------ 307 (438)
Q Consensus 234 ~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~------ 307 (438)
..+-..+..|+|.++++++-.+..+.-...+ ...-|. -...-+..+.+.++++++.+++.|+++++-++..
T Consensus 143 g~lD~y~~~G~~~~~v~~~Y~~ltG~p~~pP--~WalG~-~qsr~~y~~~~ev~~v~~~~~~~~IP~dvi~lD~~y~~~~ 219 (693)
T 2g3m_A 143 DSVEFYVIEGPRIEDVLEKYTELTGKPFLPP--MWAFGY-MISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSY 219 (693)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHCCCCCCC--GGGGSE-EEEETTCCSHHHHHHHHHHHHHTTCCEEEEEECGGGSBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHhCCCCCCc--ccccCc-cccCCcCCCHHHHHHHHHHHHHcCCCcceEEEecceecCC
Confidence 3455566789999999999888887643210 001122 1233356678999999999999999999887652
Q ss_pred -------CCChHHHHHhHhhhhhcCCeEEEE
Q 013661 308 -------HRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 308 -------hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+|=|+ ..++++++.+.|+++.+-
T Consensus 220 ~dft~d~~~FPd-p~~mv~~Lh~~G~k~~l~ 249 (693)
T 2g3m_A 220 KLFTWHPYRFPE-PKKLIDELHKRNVKLITI 249 (693)
T ss_dssp BTTCCCTTTCSC-HHHHHHHHHHTTCEEEEE
T ss_pred ccceEChhhCCC-HHHHHHHHHHCCCEEEEE
Confidence 34454 567777788899996653
No 274
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=22.71 E-value=1.4e+02 Score=29.06 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=27.7
Q ss_pred CceEeccCC-CC---CCCChhhHHHhhhCCCCCc-eEEEEeCCcchHH
Q 013661 349 LPVIGVPVR-AS---ALDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 349 ~pVi~~p~~-~~---~~~g~~~l~s~~~~~~g~p-~~tv~~~~~~~Aa 391 (438)
.-+-|||+. +. +++.+|+.|+.+-|. || |=-|.|+.++.+|
T Consensus 225 vv~~gvP~GLG~pv~~f~kLda~LA~AlmS--I~AvKGvEiG~GF~~a 270 (407)
T 2o11_A 225 AVALGLPVGLGSFTSGDHRLDSQLAAAVMG--IQAIKGVEIGDGFQTA 270 (407)
T ss_dssp EEEESCCTTCSCSSSGGGSHHHHHHHHHHT--STTEEEEEETTHHHHT
T ss_pred EEEecCCCCCCCCcccccchhHHHHHHhcC--cCceeeEEeccchhhh
Confidence 345577775 22 368899999877774 33 4488888887654
No 275
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Probab=22.65 E-value=4.2e+02 Score=28.65 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=65.6
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-----
Q 013661 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA----- 307 (438)
Q Consensus 233 ~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~----- 307 (438)
+..+=..+..|++.++++++-.+..+.-..++ ...-|.- ...=+..+.+.++++++.+++.|+++++-+...
T Consensus 257 gg~lD~y~~~Gptp~~Vv~~Y~~ltG~p~lpP--~WalG~~-qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~ 333 (875)
T 3l4y_A 257 GGILDFYVFLGNTPEQVVQEYLELIGRPALPS--YWALGFH-LSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYMDE 333 (875)
T ss_dssp SSCEEEEEEEESSHHHHHHHHHHHHCCCCCCC--GGGGSEE-ECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSBT
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHhCCCCCCC--ccccccc-eeccCCCCHHHHHHHHHHHHhcCCCCceEEEccchhcC
Confidence 44555666789999999999999888643210 0111211 112244578999999999999999999887632
Q ss_pred --------CCChHHHHHhHhhhhhcCCeEEEE
Q 013661 308 --------HRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 308 --------hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.+=|+ ..++++++.+.|.++.+-
T Consensus 334 ~~dFt~D~~~FPd-p~~mv~~Lh~~G~k~v~~ 364 (875)
T 3l4y_A 334 RRDFTYDSVDFKG-FPEFVNELHNNGQKLVII 364 (875)
T ss_dssp TBTTCCCTTTTTT-HHHHHHHHHHTTCEEEEE
T ss_pred CCceeeChhhCCC-HHHHHHHHHHCCCEEEEE
Confidence 34454 677888888999996653
No 276
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=22.48 E-value=2.7e+02 Score=24.71 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=51.2
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.+.. ...|.++ ...+.+..+++.+.+...|..+..-.+. -.+++.+.++
T Consensus 28 ~vlITGas~gIG~a~a~~l~~~----------G~~V~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~ 94 (272)
T 4e3z_A 28 VVLVTGGSRGIGAAVCRLAARQ----------GWRVGVN--YAANREAADAVVAAITESGGEAVAIPGD-VGNAADIAAM 94 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEEEEE--ESSCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEEEEE--cCCChhHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 5777777765444444444432 2244233 2345677777777888877765544333 3456667777
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
++++.+ .+++++|-.||..
T Consensus 95 ~~~~~~~~g~id~li~nAg~~ 115 (272)
T 4e3z_A 95 FSAVDRQFGRLDGLVNNAGIV 115 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHhCCCCCEEEECCCCC
Confidence 665533 2688888888743
No 277
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=22.44 E-value=2e+02 Score=27.29 Aligned_cols=84 Identities=8% Similarity=0.015 Sum_probs=46.6
Q ss_pred CeEEEEEcc-CCCHHHHH----HHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec-cccCccccccc
Q 013661 271 PRIGIIMGS-DSDLPVMK----DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVA 344 (438)
Q Consensus 271 ~~v~ii~gs-~sD~~~~~----~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~ 344 (438)
.+|++|.-+ .+|..+.. .+.+..+++|-++++.++......+...+.++.+.++|++++|+.. +....+..+..
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~ 106 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAK 106 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHT
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Confidence 456677643 33544443 3344456788556666555444444567778887788999777654 22333333333
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
..-..|++.|
T Consensus 107 ~~Pdv~fv~i 116 (356)
T 3s99_A 107 KFPDVKFEHA 116 (356)
T ss_dssp TCTTSEEEEE
T ss_pred HCCCCEEEEE
Confidence 3334556655
No 278
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.37 E-value=3.2e+02 Score=24.37 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCeEEEEEcc-----CCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccc-cCccc
Q 013661 270 LPRIGIIMGS-----DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLP 340 (438)
Q Consensus 270 ~~~v~ii~gs-----~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~ 340 (438)
...|+++... .++ ...+..+.+.+++.|+.+.. ...+..++.-.++++.+..++++-+|..... .....
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 99 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRM--TVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIE 99 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEE--CCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHH
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHH
Confidence 3567777654 233 23345556677888976554 4556666666667777777888866654321 21111
Q ss_pred ccccCCCCCceEec
Q 013661 341 GMVAARTPLPVIGV 354 (438)
Q Consensus 341 ~~i~~~~~~pVi~~ 354 (438)
..+. ....|||.+
T Consensus 100 ~~l~-~~~iPvV~i 112 (305)
T 3huu_A 100 HLLN-EFKVPYLIV 112 (305)
T ss_dssp HHHH-HTTCCEEEE
T ss_pred HHHH-HcCCCEEEE
Confidence 1121 235677765
No 279
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.31 E-value=1.7e+02 Score=25.28 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=35.1
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
++++++.- .+-.+.+.. .-+-+|+++.... -.++++..+.++++++.|++++|..
T Consensus 95 ~kIavvg~-~~~~~~~~~---~~~ll~~~i~~~~---~~~~~e~~~~i~~l~~~G~~vvVG~ 149 (196)
T 2q5c_A 95 NELALIAY-KHSIVDKHE---IEAMLGVKIKEFL---FSSEDEITTLISKVKTENIKIVVSG 149 (196)
T ss_dssp SEEEEEEE-SSCSSCHHH---HHHHHTCEEEEEE---ECSGGGHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEeC-cchhhHHHH---HHHHhCCceEEEE---eCCHHHHHHHHHHHHHCCCeEEECC
Confidence 45666643 222333333 3345777766553 3567788899999999999998863
No 280
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=22.25 E-value=1.2e+02 Score=28.81 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=44.9
Q ss_pred CeEEEEEccCC------CHHHHHHHHHHHHHcCCcEEEEEecCC-------CCh-HHHHHhHhhhhhcCCeEEEEeccc-
Q 013661 271 PRIGIIMGSDS------DLPVMKDAAKILTMFSVPHEVRIVSAH-------RTP-DLMFSYASSAHERGIEIIIAGAGG- 335 (438)
Q Consensus 271 ~~v~ii~gs~s------D~~~~~~~~~~l~~~G~~~~~~v~s~h-------r~~-~~~~~~~~~~~~~g~~v~i~~ag~- 335 (438)
..|+|++-|.. +...++.+.+.|+++|+++...- .+. +++ ++..++.+-+.+..++++++.-|+
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~-~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 84 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLP-HSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGD 84 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECT-TTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCS
T ss_pred cEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECC-chhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 46778865432 34577888899999999876541 111 233 344455555667789988888775
Q ss_pred -cCcccccc
Q 013661 336 -AAHLPGMV 343 (438)
Q Consensus 336 -~~~l~~~i 343 (438)
++.|.+.+
T Consensus 85 g~~rlLp~L 93 (346)
T 4eys_A 85 DTYRLLPYL 93 (346)
T ss_dssp CGGGGHHHH
T ss_pred CHHHHHHHh
Confidence 44444433
No 281
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=22.01 E-value=2.2e+02 Score=26.24 Aligned_cols=47 Identities=11% Similarity=-0.046 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecCC-------CChHHHHHhHhhhhhcCCeEEE
Q 013661 284 PVMKDAAKILTMFSVPHEVRIVSAH-------RTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 284 ~~~~~~~~~l~~~G~~~~~~v~s~h-------r~~~~~~~~~~~~~~~g~~v~i 330 (438)
+.+.++.+..++.|+.+++.+...- -+|+.+.++++.+.+-|++.+.
T Consensus 124 ~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~ 177 (302)
T 2ftp_A 124 ERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVS 177 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4455666666677777665554321 2466666666666666766443
No 282
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=22.01 E-value=1.9e+02 Score=25.11 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=45.6
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.+.. ...| ++. +.+.+.+.++.+.++..|..+....+. -.+++.+.+.
T Consensus 13 ~vlVtGasggiG~~la~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 78 (255)
T 1fmc_A 13 CAIITGAGAGIGKEIAITFATA----------GASV-VVS--DINADAANHVVDEIQQLGGQAFACRCD-ITSEQELSAL 78 (255)
T ss_dssp EEEETTTTSHHHHHHHHHHHTT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHC----------CCEE-EEE--cCCHHHHHHHHHHHHHhCCceEEEEcC-CCCHHHHHHH
Confidence 3667776655444444443331 2234 232 234556666666676666665433322 3456666666
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 79 ~~~~~~~~~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 79 ADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 654322 2688888877643
No 283
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=21.99 E-value=2.1e+02 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=15.4
Q ss_pred CChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 309 RTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 309 r~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+++.+.+++++..+ .+++++|-.||.
T Consensus 65 ~d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 65 TNPESIEAVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp TCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345555555544322 257788877764
No 284
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=21.98 E-value=3.2e+02 Score=24.33 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=49.9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.++++|.+.-=-...+.+.+.. ...| ++. ..++.+..+++.+.++..|..+..-.+. -.+++.+.++
T Consensus 33 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 99 (271)
T 3v2g_A 33 TAFVTGGSRGIGAAIAKRLALE----------GAAV-ALT-YVNAAERAQAVVSEIEQAGGRAVAIRAD-NRDAEAIEQA 99 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE-eCCCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHH
Confidence 3666776654333334433331 2244 332 2345677788888888888776544333 4567777777
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 100 ~~~~~~~~g~iD~lvnnAg~ 119 (271)
T 3v2g_A 100 IRETVEALGGLDILVNSAGI 119 (271)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCcEEEECCCC
Confidence 665432 268889888874
No 285
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=21.97 E-value=1.3e+02 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHcCC-cEEEEEecCCCCh-HHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSV-PHEVRIVSAHRTP-DLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~-~~~~~v~s~hr~~-~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+...++++.+.+...+- .+..-.+. -..+ +.+.++.+.+.+ .+++++|-.||.
T Consensus 44 r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 44 RDVTKGHEAVEKLKNSNHENVVFHQLD-VTDPIATMSSLADFIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEECC-TTSCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEcc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 455666666666666543 23322222 2334 444445444332 367788877764
No 286
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.96 E-value=1.9e+02 Score=24.63 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=47.3
Q ss_pred EEEccCCCHHHHHHHHHHHHHcCCcEE---------------EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcc
Q 013661 275 IIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 275 ii~gs~sD~~~~~~~~~~l~~~G~~~~---------------~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
++.|.-+....++.....|..+|.++. +-++|.-|....+.+.++.+++.|++++..-.-....|
T Consensus 51 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~L 130 (200)
T 1vim_A 51 FVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSL 130 (200)
T ss_dssp EEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHH
T ss_pred EEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChH
Confidence 555554445667777777777776533 34567677777788888888888888654332122223
Q ss_pred cccccCCCCCceEeccCCC
Q 013661 340 PGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 340 ~~~i~~~~~~pVi~~p~~~ 358 (438)
... .+-+|-+|...
T Consensus 131 a~~-----ad~~l~~~~~~ 144 (200)
T 1vim_A 131 AKM-----ADVVMVVKGKM 144 (200)
T ss_dssp HHH-----CSEEEECCSSC
T ss_pred HHh-----CCEEEEECCcc
Confidence 222 33466677643
No 287
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=21.95 E-value=1e+02 Score=28.66 Aligned_cols=33 Identities=21% Similarity=-0.005 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEE
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~ 303 (438)
+++++|+|..++.-....+++.|.+.|..+.++
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~ 34 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFG 34 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 346678886655566777777777778776543
No 288
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=21.94 E-value=2.1e+02 Score=25.48 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=42.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+++++|+|+.+ -....+++.|.+.|..+.+... ..|..+.+.+..++++..|.++.....
T Consensus 10 ~~k~vlVTGas~--GIG~aia~~la~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (262)
T 3ksu_A 10 KNKVIVIAGGIK--NLGALTAKTFALESVNLVLHYH-QAKDSDTANKLKDELEDQGAKVALYQS 70 (262)
T ss_dssp TTCEEEEETCSS--HHHHHHHHHHTTSSCEEEEEES-CGGGHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEec-CccCHHHHHHHHHHHHhcCCcEEEEEC
Confidence 467789999876 6778889999999988665421 134556666777666666777665544
No 289
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=21.84 E-value=4.2e+02 Score=23.44 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=34.6
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC---------CCChHHHHHhHhh-h-hhcCCe-EEEEecc
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA---------HRTPDLMFSYASS-A-HERGIE-IIIAGAG 334 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~---------hr~~~~~~~~~~~-~-~~~g~~-v~i~~ag 334 (438)
++|++++- .....-....+.|+..|+++..- .+. +-+++.+.+.+++ + ...|++ +++.|++
T Consensus 118 ~rvglltp--y~~~~~~~~~~~l~~~Giev~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT~ 190 (240)
T 3ixl_A 118 RRVALATA--YIDDVNERLAAFLAEESLVPTGC-RSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSGG 190 (240)
T ss_dssp SEEEEEES--SCHHHHHHHHHHHHHTTCEEEEE-EECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECTT
T ss_pred CEEEEEeC--ChHHHHHHHHHHHHHCCCEEecc-ccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 56777752 33344455567888888875322 121 2246666667766 5 556777 4445553
No 290
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=21.78 E-value=5.1e+02 Score=24.45 Aligned_cols=29 Identities=7% Similarity=-0.029 Sum_probs=16.5
Q ss_pred EEccCCCHHHHHHHHHHHHHc--CCcEEEEE
Q 013661 276 IMGSDSDLPVMKDAAKILTMF--SVPHEVRI 304 (438)
Q Consensus 276 i~gs~sD~~~~~~~~~~l~~~--G~~~~~~v 304 (438)
|.++.+-.+.+.++.+.+++. |+++....
T Consensus 47 V~~a~sl~~~~~~l~~~Fe~~~pgv~V~~~~ 77 (354)
T 3k6v_A 47 VFHAGSLSVPFEELEAEFEAQHPGVDVQREA 77 (354)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEecchHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 333444556667777666543 66666553
No 291
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=21.71 E-value=2e+02 Score=26.20 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=46.4
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCC---cEEEEEecCCCChHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLM 314 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~---~~~~~v~s~hr~~~~~ 314 (438)
.++++|.+.-=-...+.+.++. ...| ++. +.+.+.++++.+.+...|. .+..-.+. -..++.+
T Consensus 28 ~vlVTGas~gIG~aia~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~~D-v~d~~~v 93 (297)
T 1xhl_A 28 SVIITGSSNGIGRSAAVIFAKE----------GAQV-TIT--GRNEDRLEETKQQILKAGVPAEKINAVVAD-VTEASGQ 93 (297)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCGGGEEEEECC-TTSHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCCCceEEEEecC-CCCHHHH
Confidence 3666776655444444443331 2344 333 2455667777777776665 44433222 3456666
Q ss_pred HHhHhhhhh--cCCeEEEEeccc
Q 013661 315 FSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 315 ~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+++++..+ .+++++|-.||.
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 94 DDIINTTLAKFGKIDILVNNAGA 116 (297)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 666654322 368899988874
No 292
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=21.69 E-value=2.1e+02 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=40.9
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhh-hcCCeEEEEec
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH-ERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~-~~g~~v~i~~a 333 (438)
.+++++|+|..+ -....+++.|.+.|..+.+. .+|+++.+.+..++++ ..|.++.....
T Consensus 8 ~~k~~lVTGas~--GIG~aia~~la~~G~~V~~~---~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 67 (291)
T 1e7w_A 8 TVPVALVTGAAK--RLGRSIAEGLHAEGYAVCLH---YHRSAAEANALSATLNARRPNSAITVQA 67 (291)
T ss_dssp CCCEEEETTCSS--HHHHHHHHHHHHTTCEEEEE---ESSCHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCeEEEE---cCCCHHHHHHHHHHHhhhcCCeeEEEEe
Confidence 356779999876 67788899999999876554 1388887777766654 44555554433
No 293
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=21.65 E-value=2.3e+02 Score=25.18 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+.+.+..+.+...|..+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 58 TPEELAATVKLVEDIGSRIVARQAD-VRDRESLSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECC-TTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred chHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3667777777777777766554443 4567777777665432 2678888888743
No 294
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=21.63 E-value=2.1e+02 Score=25.56 Aligned_cols=85 Identities=9% Similarity=0.064 Sum_probs=49.1
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+.-=-...+.+.+.. ...| ++. ..++...++++.+.++..|..+..-.+. -.+++.+.+++
T Consensus 31 vlVTGas~gIG~aia~~la~~----------G~~V-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~d~~~v~~~~ 97 (269)
T 4dmm_A 31 ALVTGASRGIGRAIALELAAA----------GAKV-AVN-YASSAGAADEVVAAIAAAGGEAFAVKAD-VSQESEVEALF 97 (269)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEE-eCCChHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 556666654333334433331 2344 333 2335677778888888888776544333 45566677766
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013661 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
+++.+ .+++++|-.||..
T Consensus 98 ~~~~~~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 98 AAVIERWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 65432 2688888888743
No 295
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=21.61 E-value=2.8e+02 Score=24.13 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.++..|..+..-.+. -.+++.+.+++++..+ .+++++|-.||.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (246)
T 3osu_A 37 GSKEKAEAVVEEIKAKGVDSFAIQAN-VADADEVKAMIKEVVSQFGSLDVLVNNAGI 92 (246)
T ss_dssp SCHHHHHHHHHHHHHTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35567777777777777765443333 4556666666655432 267888887764
No 296
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.55 E-value=2.3e+02 Score=20.29 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=33.8
Q ss_pred EEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCH----HHHHHHHHHHHHcCCc-EEEEE
Q 013661 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDL----PVMKDAAKILTMFSVP-HEVRI 304 (438)
Q Consensus 241 ~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~----~~~~~~~~~l~~~G~~-~~~~v 304 (438)
..|+..+.|++.++.++..-- -..| -++.|..+- +.++-+++.|.++|++ +.++|
T Consensus 26 stgkeleralqelekalarag--------arnv-qitisaendeqakelleliarllqklgykdinvrv 85 (96)
T 2jvf_A 26 STGKELERALQELEKALARAG--------ARNV-QITISAENDEQAKELLELIARLLQKLGYKDINVRV 85 (96)
T ss_dssp CSSSHHHHHHHHHHHHHHHHT--------CSEE-EEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHhcc--------ccce-EEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 357888889888888876421 1233 233333332 3344456788999998 56665
No 297
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=21.41 E-value=3e+02 Score=24.76 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=31.4
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhh
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~ 321 (438)
++.++|.|.. .....++..|...|.++.+. +|++++..++.+++
T Consensus 119 ~k~vlViGaG---g~g~a~a~~L~~~G~~V~v~----~R~~~~~~~la~~~ 162 (271)
T 1nyt_A 119 GLRILLIGAG---GASRGVLLPLLSLDCAVTIT----NRTVSRAEELAKLF 162 (271)
T ss_dssp TCEEEEECCS---HHHHHHHHHHHHTTCEEEEE----CSSHHHHHHHHHHT
T ss_pred CCEEEEECCc---HHHHHHHHHHHHcCCEEEEE----ECCHHHHHHHHHHh
Confidence 4445777873 67888899999999544433 79998877776544
No 298
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*
Probab=21.39 E-value=5.1e+02 Score=28.11 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=64.7
Q ss_pred CceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC-----
Q 013661 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA----- 307 (438)
Q Consensus 233 ~~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~----- 307 (438)
+..+=..+..|++.++++++-.+..+.-..++ ...-|.- ...=+..+.+.++++++.+++.|+++++-+...
T Consensus 285 gg~lD~y~~~Gptp~~Vi~~Y~~LtG~p~lpP--~WalG~~-qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~ 361 (898)
T 3lpp_A 285 GGILDFYILLGDTPEQVVQQYQQLVGLPAMPA--YWNLGFQ-LSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDIDYMED 361 (898)
T ss_dssp SSCEEEEEEEESSHHHHHHHHHHHHCCCCCCC--GGGGSCE-ECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSST
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHhCCCCcCc--chhcCcc-eecccCCCHHHHHHHHHHHHHcCCCceeeEeccccccC
Confidence 34455566689999999999998888643211 0111211 112244578999999999999999999887632
Q ss_pred --------CCChHHHHHhHhhhhhcCCeEEEE
Q 013661 308 --------HRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 308 --------hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.+=|+ ..++++++.+.|.++.+-
T Consensus 362 ~~dFt~D~~~FPd-p~~mv~~Lh~~G~k~vl~ 392 (898)
T 3lpp_A 362 KKDFTYDQVAFNG-LPQFVQDLHDHGQKYVII 392 (898)
T ss_dssp TCTTCCCTTTTTT-HHHHHHHHHHTTCEEEEE
T ss_pred CCcceEChhhCCC-HHHHHHHHHHCCCEEEEE
Confidence 34453 667788888999996643
No 299
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=21.25 E-value=2.7e+02 Score=24.56 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=51.4
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.++. ...|.++ ...+....++..+.+...|..+....+. -.+++.+.++
T Consensus 28 ~vlVTGas~gIG~~la~~l~~~----------G~~v~i~--~~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~ 94 (267)
T 4iiu_A 28 SVLVTGASKGIGRAIARQLAAD----------GFNIGVH--YHRDAAGAQETLNAIVANGGNGRLLSFD-VANREQCREV 94 (267)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEEEEE--ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC----------CCEEEEE--eCCchHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHH
Confidence 4677777765444444444431 2344233 3356677888888888887776554443 3567777776
Q ss_pred Hhhhhh--cCCeEEEEecccc
Q 013661 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ ..++++|-.||..
T Consensus 95 ~~~~~~~~g~id~li~nAg~~ 115 (267)
T 4iiu_A 95 LEHEIAQHGAWYGVVSNAGIA 115 (267)
T ss_dssp HHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHhCCccEEEECCCCC
Confidence 655432 3678888888643
No 300
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=21.25 E-value=16 Score=38.11 Aligned_cols=44 Identities=14% Similarity=0.032 Sum_probs=27.8
Q ss_pred cEEEEecCCCCCCcCeEEeCCHHH-HHHHHHHhcCCCCcEEEeeccCC
Q 013661 19 PLMVKSKRLAYDGRGNAVAKSEEE-LSSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 19 PvvvKP~~~g~gg~Gv~~v~~~~e-l~~~~~~~~~~~~~~lvEe~I~g 65 (438)
..|+||..+. .|.||.+++..++ +++....... ..++.|+|++-
T Consensus 529 ~yV~KPi~gR-eG~nV~i~~~~~~~~~~~~~~y~~--~~~IyQe~~~l 573 (619)
T 2io8_A 529 GYAVKPIAGR-CGSNIDLVSHHEEVLDKTSGKFAE--QKNIYQQLWCL 573 (619)
T ss_dssp CEEEEETTCC-TTTTCEEECTTSCEEEECCCTTTT--SCEEEEECCCC
T ss_pred CEEEccCCCC-CCCCEEEEeCCChhHhhccccccC--CCeEEEEecCC
Confidence 4899997765 8999999976222 1111111112 44899999984
No 301
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=21.24 E-value=1.9e+02 Score=25.39 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhc--CCeEEEEeccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
+.+.+.++.+.+...|..+..-.+. -..++.+.++++++.+. +++++|-.||.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (276)
T 1wma_A 38 DVTRGQAAVQQLQAEGLSPRFHQLD-IDDLQSIRALRDFLRKEYGGLDVLVNNAGI 92 (276)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred ChHHHHHHHHHHHhcCCeeEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 4555666666666656554433333 23455566655543222 56677766653
No 302
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=21.22 E-value=2.8e+02 Score=24.43 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
++.+...+..+.++..|..+..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 96 (259)
T 3edm_A 41 GAAEGAATAVAEIEKLGRSALAIKAD-LTNAAEVEAAISAAADKFGEIHGLVHVAGG 96 (259)
T ss_dssp SSCHHHHHHHHHHHTTTSCCEEEECC-TTCHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 34455666677777777664433333 3456666666655433 257778877764
No 303
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=21.16 E-value=2.5e+02 Score=24.76 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=42.6
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc--CCcEEEEEecCCCChHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~--G~~~~~~v~s~hr~~~~~~ 315 (438)
.++++|.+.-=-...+.+.+.. ...| ++. +.+.+.+.++.+.+... |..+..-.+. -.+++.+.
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~ 74 (260)
T 2z1n_A 9 LAVVTAGSSGLGFASALELARN----------GARL-LLF--SRNREKLEAAASRIASLVSGAQVDIVAGD-IREPGDID 74 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHSTTCCEEEEECC-TTCHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCCCeEEEEEcc-CCCHHHHH
Confidence 3666776655444444443331 2234 332 23455566666555543 3233322222 34566666
Q ss_pred HhHhhhh-hcCCeEEEEeccc
Q 013661 316 SYASSAH-ERGIEIIIAGAGG 335 (438)
Q Consensus 316 ~~~~~~~-~~g~~v~i~~ag~ 335 (438)
+++++.. ..|++++|-.||.
T Consensus 75 ~~~~~~~~~~gid~lv~~Ag~ 95 (260)
T 2z1n_A 75 RLFEKARDLGGADILVYSTGG 95 (260)
T ss_dssp HHHHHHHHTTCCSEEEECCCC
T ss_pred HHHHHHHHhcCCCEEEECCCC
Confidence 6665543 3358888888874
No 304
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=21.12 E-value=75 Score=22.33 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=18.2
Q ss_pred EEEcCCHHHHHHHHHHHhhc
Q 013661 240 TIVGSSMGLVESRLNSLLKE 259 (438)
Q Consensus 240 i~~G~~~~eA~~ka~~a~~~ 259 (438)
...|+|.+||+..++.++..
T Consensus 27 ~t~G~T~eEa~~~~~eAi~~ 46 (67)
T 2yzt_A 27 HTQAQSFEELLRRLQEAIAV 46 (67)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred ceeeCCHHHHHHHHHHHHHH
Confidence 78999999999999999873
No 305
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*
Probab=21.11 E-value=3.9e+02 Score=28.65 Aligned_cols=94 Identities=7% Similarity=0.096 Sum_probs=64.2
Q ss_pred ceeEEEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecC------
Q 013661 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------ 307 (438)
Q Consensus 234 ~~~G~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~------ 307 (438)
..+-..+..|++..+++++-.+..+.-..++ ...-|.- ...-+..+.+.+.++++.+++.|+|+++-++..
T Consensus 230 g~ld~y~~~G~~p~~v~~~Y~~ltG~~~lpP--~WalG~~-~sr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d 306 (817)
T 4ba0_A 230 GRSAYILVAGNSYPSLIENFTQVTGRQPLPP--RWALGSF-ASRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKD 306 (817)
T ss_dssp SCCEEEEEECSSHHHHHHHHHHHHCCCCCCC--GGGGSBE-ECCBCCCSHHHHHHHHHHHHHHTCCCCEEEECGGGSCSS
T ss_pred CcEEEEEecCCCHHHHHHHHHHhcCCCCCCC--ccccCcc-eecccCCCHHHHHHHHHHHHHhCCCCcEEEEcccccCCc
Confidence 3456677889999999999999988644321 0111211 111234478889999999999999999888764
Q ss_pred ------------CCChHHHHHhHhhhhhcCCeEEEE
Q 013661 308 ------------HRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 308 ------------hr~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.|=|+ ..++++++++.|+++.+-
T Consensus 307 ~~~~~gdftwd~~~FPd-p~~mv~~Lh~~G~k~vl~ 341 (817)
T 4ba0_A 307 IKGHMGNLDWDKENFPT-PLDMMADFKQQGVKTVLI 341 (817)
T ss_dssp SSSCTTCCSCCTTTCSC-HHHHHHHHHHTTCEEEEE
T ss_pred cccccCccccccccCCC-HHHHHHHHHHCCCEEEEE
Confidence 12244 356777778899996653
No 306
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=21.09 E-value=2.4e+02 Score=26.18 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
..+.+.++++.+.+...|..+..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 41 ~r~~~~~~~l~~~~~~~~~~~~~~~~D-vtd~~~v~~~~~~~~~~~g~iD~lVnnAG~ 97 (324)
T 3u9l_A 41 GRNASNVEAIAGFARDNDVDLRTLELD-VQSQVSVDRAIDQIIGEDGRIDVLIHNAGH 97 (324)
T ss_dssp TTTHHHHHHHHHHHHHHTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred ccCHHHHHHHHHHHHhcCCcEEEEEee-cCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 345677777777777777665544333 2356666666655422 368899988873
No 307
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=21.04 E-value=2.5e+02 Score=25.48 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=44.6
Q ss_pred CeEEEEEccCCCHHHH----HHHHHHHHHcCCcEEEEEe-cCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc-
Q 013661 271 PRIGIIMGSDSDLPVM----KDAAKILTMFSVPHEVRIV-SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA- 344 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~----~~~~~~l~~~G~~~~~~v~-s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~- 344 (438)
+.|++++-..++ ++. ..+.+.++++|+.+. +. ....+++.-.+.++.+..++++.+|+..-....+..++.
T Consensus 4 ~~Igvi~~~~~~-~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~ 80 (316)
T 1tjy_A 4 ERIAFIPKLVGV-GFFTSGGNGAQEAGKALGIDVT--YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKR 80 (316)
T ss_dssp CEEEEECSSSSS-HHHHHHHHHHHHHHHHHTCEEE--ECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHH
T ss_pred CEEEEEeCCCCC-hHHHHHHHHHHHHHHHhCCEEE--EECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 456666543333 333 333455667886554 33 256777766667777767788877765433333333331
Q ss_pred -CCCCCceEec
Q 013661 345 -ARTPLPVIGV 354 (438)
Q Consensus 345 -~~~~~pVi~~ 354 (438)
.....|||.+
T Consensus 81 a~~~gipvV~~ 91 (316)
T 1tjy_A 81 AMQRGVKILTW 91 (316)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCcCEEEEe
Confidence 1234677765
No 308
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=21.02 E-value=4.1e+02 Score=23.73 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=35.8
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEec
Q 013661 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++++++|+|+.+ -.-..+++.|.+.|..+.+.- .+.++++.+.+ ++.|.++.....
T Consensus 8 ~GKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~~---r~~~~~~~~~~---~~~g~~~~~~~~ 63 (247)
T 4hp8_A 8 EGRKALVTGANT--GLGQAIAVGLAAAGAEVVCAA---RRAPDETLDII---AKDGGNASALLI 63 (247)
T ss_dssp TTCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEE---SSCCHHHHHHH---HHTTCCEEEEEC
T ss_pred CCCEEEEeCcCC--HHHHHHHHHHHHcCCEEEEEe---CCcHHHHHHHH---HHhCCcEEEEEc
Confidence 577888888875 677778888888888765541 33345555444 445656554433
No 309
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=21.00 E-value=2.9e+02 Score=24.47 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHH-cCCc-EEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 281 SDLPVMKDAAKILTM-FSVP-HEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~l~~-~G~~-~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.++++.+.+.. .+-. +..-.+. -.+++.+.++++++.+ ..++++|-.||.
T Consensus 40 r~~~~~~~~~~~l~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 40 RDGERLRAAESALRQRFPGARLFASVCD-VLDALQVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp SCHHHHHHHHHHHHHHSTTCCEEEEECC-TTCHHHHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 455666676666655 4433 3332222 3456666666655432 257788877764
No 310
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.97 E-value=2.6e+02 Score=23.25 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCeEEEEEccCC-------CHHHHHHHHHHHHHcCCcEE-EEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccc
Q 013661 270 LPRIGIIMGSDS-------DLPVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 270 ~~~v~ii~gs~s-------D~~~~~~~~~~l~~~G~~~~-~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
+.+++|++.++. |. ...-+...|+++|+++. ..++ .-+ +.+.+.++++.+.+++++|+..|.+..--+
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Ds-n~~~l~~~l~~~G~~v~~~~iv--~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D 82 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDR-CGPIITEWLAQQGFSSAQPEVV--ADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTD 82 (164)
T ss_dssp CCEEEEEEECHHHHC----CC-HHHHHHHHHHHTTCEECCCEEE--CSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTC
T ss_pred CCEEEEEEECCCCCCCceeeH-HHHHHHHHHHHCCCEEEEEEEe--CCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCc
Confidence 456666665531 21 22345668899999853 2332 223 556666655443468988887776544333
No 311
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.96 E-value=2.6e+02 Score=25.23 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=46.4
Q ss_pred CCeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--
Q 013661 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA-- 344 (438)
Q Consensus 270 ~~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~-- 344 (438)
++.|+++.-+.++ ......+.+.++++|+.+... ..+..+++-.+.++.+...+++.+|...-........+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQ--YADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEe--eCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 4566677654433 123334456667788765544 457777777777777767788876654422222222221
Q ss_pred CCCCCceEec
Q 013661 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVi~~ 354 (438)
.....|||.+
T Consensus 81 ~~~giPvV~~ 90 (330)
T 3uug_A 81 GEQGIKVIAY 90 (330)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCCEEEE
Confidence 1234677765
No 312
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=20.95 E-value=2.9e+02 Score=23.97 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--------cCCeEEEEeccc
Q 013661 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--------RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--------~g~~v~i~~ag~ 335 (438)
+.+.+++..+.+...+..+..-.+. -..++.+.++.+...+ ..++++|-.||.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~ 101 (255)
T 3icc_A 41 RKEEAEETVYEIQSNGGSAFSIGAN-LESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 101 (255)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHHHHHHHHHHHHHSSSCEEEEEECCCC
T ss_pred chHHHHHHHHHHHhcCCceEEEecC-cCCHHHHHHHHHHHHHHhcccccCCcccEEEECCCC
Confidence 3455666666777766554433222 2344545555444322 137777877764
No 313
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=20.92 E-value=2.1e+02 Score=25.18 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=26.9
Q ss_pred HHHHHHHHHHc-CCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEeccc
Q 013661 286 MKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 286 ~~~~~~~l~~~-G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
++++.+.+... |..+..-.+. -..++.+.+++++..+ .+++++|-.||.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 93 (260)
T 1x1t_A 42 IEKVRAGLAAQHGVKVLYDGAD-LSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp HHHHHHHHHHHHTSCEEEECCC-TTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHhccCCcEEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 55555555544 6554332222 3446666666654322 368888888874
No 314
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=20.89 E-value=4e+02 Score=22.85 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=46.3
Q ss_pred CeEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCC
Q 013661 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART 347 (438)
Q Consensus 271 ~~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~ 347 (438)
+.|+++....++ ...+..+.+.+++.|+.+... ..+..++...++++.+..++++-+|......... ..+.. .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~-~~l~~-~ 78 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMM--ESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE-EMLAH-W 78 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-TTSGG-G
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEE--eCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-HHHHh-c
Confidence 456677654433 233445566778899876543 4566777777777777777888666543222222 22322 2
Q ss_pred CCceEec
Q 013661 348 PLPVIGV 354 (438)
Q Consensus 348 ~~pVi~~ 354 (438)
..|||.+
T Consensus 79 ~~pvV~~ 85 (255)
T 1byk_A 79 QSSLVLL 85 (255)
T ss_dssp SSSEEEE
T ss_pred CCCEEEE
Confidence 3577765
No 315
>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} SCOP: c.23.17.1
Probab=20.83 E-value=2.7e+02 Score=24.71 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=29.1
Q ss_pred ccccccc-CCCCCceEeccCCCCCCCChhhHHHhhh-CCCCCceEEEEeCCcchHHHHHHHH
Q 013661 338 HLPGMVA-ARTPLPVIGVPVRASALDGLDSLLSIVQ-MPRGVPVATVAINNATNAGLLAVRM 397 (438)
Q Consensus 338 ~l~~~i~-~~~~~pVi~~p~~~~~~~g~~~l~s~~~-~~~g~p~~tv~~~~~~~Aa~~a~~i 397 (438)
+|-.+|. +-.+..|||+|++. =|.. -|... +..+||++|+. +.--+.++.|+-+
T Consensus 142 ~Lleli~g~~~PalVIG~PVGF---Vgaa--ESKe~L~~~~vP~I~~~-GrkGGS~vAaAiv 197 (218)
T 1v9c_A 142 ALVEAIRQGARPALVLGMPVGF---VNVL--EAKRALMEAPVPWIVTE-GRKGGSTLVVAAL 197 (218)
T ss_dssp HHHHHHHTTCCCSEEEECCCSS---SSHH--HHHHHHTTSSSCEEEEC-TTCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCcEEEEeCCCc---cCHH--HHHHHHHhCCCCEEEEe-CCCCCHHHHHHHH
Confidence 4455554 23566799999962 1221 12111 24599999875 3222444444443
No 316
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=20.82 E-value=3.2e+02 Score=24.25 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=49.0
Q ss_pred EEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhH
Q 013661 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~ 318 (438)
++++|.+.-=-...+.+.+.. ...| ++. ..++....+++.+.+...|..+....+. -.+++.+.+++
T Consensus 30 ~lVTGas~GIG~aia~~la~~----------G~~V-v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~~ 96 (267)
T 3u5t_A 30 AIVTGASRGIGAAIAARLASD----------GFTV-VIN-YAGKAAAAEEVAGKIEAAGGKALTAQAD-VSDPAAVRRLF 96 (267)
T ss_dssp EEEESCSSHHHHHHHHHHHHH----------TCEE-EEE-ESSCSHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHC----------CCEE-EEE-cCCCHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHH
Confidence 556666654333333433332 2244 332 2344567777888888888776544333 45677777777
Q ss_pred hhhhh--cCCeEEEEecccc
Q 013661 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
+++.+ .+++++|-.||..
T Consensus 97 ~~~~~~~g~iD~lvnnAG~~ 116 (267)
T 3u5t_A 97 ATAEEAFGGVDVLVNNAGIM 116 (267)
T ss_dssp HHHHHHHSCEEEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 65533 2678888888743
No 317
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=20.81 E-value=1.3e+02 Score=23.49 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=24.6
Q ss_pred cCC-cEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCcccc
Q 013661 296 FSV-PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 296 ~G~-~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
.|+ +++..+. ++.|. ..+++.+++.+++.++.++-+...+..
T Consensus 73 ~g~~~~~~~~~--~g~~~--~~I~~~a~~~~~dliV~G~~~~~~~~~ 115 (137)
T 2z08_A 73 TGVPKEDALLL--EGVPA--EAILQAARAEKADLIVMGTRGLGALGS 115 (137)
T ss_dssp HCCCGGGEEEE--ESSHH--HHHHHHHHHTTCSEEEEESSCTTCCSC
T ss_pred cCCCccEEEEE--ecCHH--HHHHHHHHHcCCCEEEECCCCCchhhh
Confidence 677 6655543 45553 344555577789988877644333433
No 318
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.68 E-value=3.3e+02 Score=25.10 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=39.2
Q ss_pred CeEEEEEccCCCH---HHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~---~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|+++..+.++- ..+..+.+.+++.|+.+... ..+..++...++++.+..++++-+|..
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdGiI~~ 133 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLG--YTAYSPEREEQLVETMLRRRPEAMVLS 133 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 4677776554432 33445556777888876544 557778777778877777788866554
No 319
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=20.59 E-value=2.9e+02 Score=24.64 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhh--cCCeEEEEecccc
Q 013661 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 283 ~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+.+..+.+...|..+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (281)
T 3s55_A 56 ADDLAETVALVEKTGRRCISAKVD-VKDRAALESFVAEAEDTLGGIDIAITNAGIS 110 (281)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 667777777777778776544333 4667777777765533 2688998888743
No 320
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=20.58 E-value=2.4e+02 Score=24.65 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=45.7
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHh
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~ 317 (438)
.|+++|.+.-=-...+.+.+.. ...| ++. +.++.+.+.++.+.+...|..+..-.+. -..++.+.++
T Consensus 9 ~vlITGasggiG~~~a~~l~~~----------G~~V-~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~ 75 (261)
T 1gee_A 9 VVVITGSSTGLGKSMAIRFATE----------KAKV-VVN-YRSKEDEANSVLEEIKKVGGEAIAVKGD-VTVESDVINL 75 (261)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT----------TCEE-EEE-ESSCHHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCEE-EEE-cCCChHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHH
Confidence 3666676655444444444331 2234 332 2225566677777777666554433222 3456666666
Q ss_pred Hhhhhh--cCCeEEEEeccc
Q 013661 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++..+ .+++++|-.||.
T Consensus 76 ~~~~~~~~g~id~li~~Ag~ 95 (261)
T 1gee_A 76 VQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 654422 268888888874
No 321
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=20.51 E-value=3.5e+02 Score=24.20 Aligned_cols=67 Identities=9% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--CCCCCceEec
Q 013661 287 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--ARTPLPVIGV 354 (438)
Q Consensus 287 ~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~~~~~pVi~~ 354 (438)
..+.+.++++|+.+..... .+.+++...+.++.+..++++.+|........+...+. .....|||.+
T Consensus 20 ~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (313)
T 2h3h_A 20 QGVKAAGKALGVDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL 88 (313)
T ss_dssp HHHHHHHHHHTCEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEe
Confidence 3444566777876554321 25666666666766666678766654432222222221 1234677765
No 322
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=20.31 E-value=1.9e+02 Score=26.59 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=46.9
Q ss_pred HHHHcCCcEEEEE-ec--CCCChHHHHHhHhhhhhcCCeEEEEeccccCcccccccCCCCCceEec
Q 013661 292 ILTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 292 ~l~~~G~~~~~~v-~s--~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVi~~ 354 (438)
..+.+|++...-. .+ .--+|.++.++++.+++.+++++..-...+..+...|+..+-.+|+.+
T Consensus 192 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l 257 (286)
T 3gi1_A 192 LAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTL 257 (286)
T ss_dssp HHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEEC
T ss_pred HHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEe
Confidence 3478999955422 11 244678899999989999999999888777788888887777888765
No 323
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=20.31 E-value=2.5e+02 Score=25.23 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=44.2
Q ss_pred EEEEEcCCHHHHHHHHHHHhhcCCCCccccCCCCeEEEEEccCCCHHHHHHHHHHHHHc-CCcEEEEEecCCCChHHHHH
Q 013661 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 238 ~Vi~~G~~~~eA~~ka~~a~~~i~~~~~~~~~~~~v~ii~gs~sD~~~~~~~~~~l~~~-G~~~~~~v~s~hr~~~~~~~ 316 (438)
.++++|.+.-=-...+.+.++. ...| ++. +.+.+.+.++.+.+... |-.+..-.+. -..++.+.+
T Consensus 28 ~vlITGasggiG~~la~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~~~~ 93 (302)
T 1w6u_A 28 VAFITGGGTGLGKGMTTLLSSL----------GAQC-VIA--SRKMDVLKATAEQISSQTGNKVHAIQCD-VRDPDMVQN 93 (302)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHHSSCEEEEECC-TTCHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHHhcCCceEEEEeC-CCCHHHHHH
Confidence 4677777655444444444331 2234 332 23445566666555544 6555443333 345666666
Q ss_pred hHhhhhh--cCCeEEEEeccc
Q 013661 317 YASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~ 335 (438)
.++.+.+ ..++++|-.||.
T Consensus 94 ~~~~~~~~~g~id~li~~Ag~ 114 (302)
T 1w6u_A 94 TVSELIKVAGHPNIVINNAAG 114 (302)
T ss_dssp HHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 6655422 257888888874
No 324
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.29 E-value=3.1e+02 Score=24.56 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=44.5
Q ss_pred eEEEEEccCCC---HHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEeccccCccccccc--CC
Q 013661 272 RIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--AR 346 (438)
Q Consensus 272 ~v~ii~gs~sD---~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~~ 346 (438)
.|+++..+.++ ......+.+.+++.|+.+... .....+++..++++.+..++++-+|........+...+. ..
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 81 (306)
T 2vk2_A 4 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD 81 (306)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHH
Confidence 46666654333 123344556777888876543 446677766677777766788866654422222222221 12
Q ss_pred CCCceEec
Q 013661 347 TPLPVIGV 354 (438)
Q Consensus 347 ~~~pVi~~ 354 (438)
...|||.+
T Consensus 82 ~~iPvV~~ 89 (306)
T 2vk2_A 82 AEIPVFLL 89 (306)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEe
Confidence 34677765
No 325
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=20.20 E-value=2.9e+02 Score=27.44 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=41.8
Q ss_pred EEccCCCHHHHHHHHHHHHHcCCcEEEEEec--CCC-ChHHHHHhHhhhhhcCCeEEEE
Q 013661 276 IMGSDSDLPVMKDAAKILTMFSVPHEVRIVS--AHR-TPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 276 i~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s--~hr-~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
|..+.||...+.++.+..++.|..+.+.+.. ..+ +|+.+.++++.+.+.|++.+..
T Consensus 119 if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l 177 (464)
T 2nx9_A 119 VFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIAL 177 (464)
T ss_dssp ECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4457788889999999999999887766622 222 6788888888888888885543
No 326
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=20.08 E-value=5.7e+02 Score=24.33 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=40.8
Q ss_pred CeEEEEEccCCCHHHHHHHHHHHHHcCCcEEEEEecCCCChHHHHHhHhhhhhcCCeEEEEe
Q 013661 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~ii~gs~sD~~~~~~~~~~l~~~G~~~~~~v~s~hr~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..++...+.+.++++.|...|+.+++... .++ +-.-++.++..|++..+++
T Consensus 299 ~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~--~~~---~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 299 VQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLR--NEK---IGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECC--SSC---HHHHHHHHHHTTCSEEEEE
T ss_pred eEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECC--CCC---HHHHHHHHHhcCCCEEEEE
Confidence 46767776677788899999999999999888731 233 4444455677899966554
Done!