RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013661
(438 letters)
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 208 bits (531), Expect = 1e-66
Identities = 110/167 (65%), Positives = 136/167 (81%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330
PR+GIIMGSDSDLPVMK AA+IL F + +E+ IVSAHRTPD MF YA +A ERGIE+II
Sbjct: 1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60
Query: 331 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNA 390
AGAGGAAHLPGMVA+ T LPVIGVPV+ S L+GLDSL SIVQMP GVPVATVAINNA NA
Sbjct: 61 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 120
Query: 391 GLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLN 437
G+LA +LG ++ ++++Y E M+ +VL KA++L++ G++ YLN
Sbjct: 121 GILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLN 167
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 177 bits (449), Expect = 2e-54
Identities = 85/160 (53%), Positives = 114/160 (71%), Gaps = 2/160 (1%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330
R+ I+MGS SD M+ AA+I + +VPH V +VSAHRTPD +FS+A SA E G ++II
Sbjct: 2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61
Query: 331 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NAT 388
AGAGGAAHLPGM+AA+T +PV+GVPV+++AL G+DSL SIVQMPRG+PV T+AI A
Sbjct: 62 AGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 121
Query: 389 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428
NA LLA ++L D +L R+ + + D+VL +
Sbjct: 122 NAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRG 161
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 176 bits (448), Expect = 2e-54
Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330
+G+IMGS SD MK A IL ++P+E ++VSAHRTPD MF YA +A ERG+++II
Sbjct: 2 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61
Query: 331 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NAT 388
AGAGGAAHLPGMVAA+T LPVIGVPV++ AL+GLDSLLSIVQMP GVPVATVAI +T
Sbjct: 62 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 121
Query: 389 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVL 421
NAGLLA ++LG D+ ++ E + DV
Sbjct: 122 NAGLLAAQILGSFHDDIHDALELRREAIEKDVR 154
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Length = 159
Score = 172 bits (436), Expect = 1e-52
Identities = 86/155 (55%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ERG+ +II
Sbjct: 3 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 62
Query: 331 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NAT 388
AGAGGAAHLPGM AA T LPV+GVPV + AL G+DSLLSIVQMP GVPV T+AI A
Sbjct: 63 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAK 122
Query: 389 NAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTK 423
NA LLA +L + L AR++ + V
Sbjct: 123 NAALLAASILALYNPALAARLETWRALQTASVPNS 157
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 91.7 bits (226), Expect = 3e-22
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 5/181 (2%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEK 61
+ + + G +VK + YDGRG ++ E VE+
Sbjct: 21 LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAE----CYGECIVEQ 76
Query: 62 WAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAV 121
F E++++ RG D S + YP+ +H++ I A + A ++ +
Sbjct: 77 GINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIM 136
Query: 122 SSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGD 181
L G+ A+E F T +L+NE+APR HNSGH T SQFE H+RA+ LPL
Sbjct: 137 QELGYVGVMAMECFVTPQ-GLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQ 195
Query: 182 P 182
P
Sbjct: 196 P 196
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 86.7 bits (213), Expect = 2e-20
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 5/183 (2%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG---LYV 59
+ R A GYP +VK + + +E+ + A G G + V
Sbjct: 23 ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIV 82
Query: 60 EKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHK 119
E F E+ ++ V D V ++ P + E A ++A K
Sbjct: 83 EGVVKFDFEITLLTVSAVDGVH-FCAPVGHRQEDGDYRESWQPQQMSPLALERAQEIARK 141
Query: 120 AVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPL 179
V +L G + +++ +EV+PRPH++G T+ S S+F H+RA +GLP+
Sbjct: 142 VVLALGG-YGLFGVELFVCGDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPV 200
Query: 180 GDP 182
G
Sbjct: 201 GGI 203
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 71.4 bits (174), Expect = 6e-15
Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 11/187 (5%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEE-------LSSAITALGGFDR 55
+ LE A+ ++ GYP+++K+ EE A A G
Sbjct: 23 LKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFG--RG 80
Query: 56 GLYVEKWAPFVKELAVIVVRGRDKSILC-YPVVETIHKENICHI-VKAPAAVPWKISELA 113
L +EK+ K + V+ + +++ +I + N + + + + E
Sbjct: 81 DLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYY 140
Query: 114 TDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRA 173
++ KA + +E G + E+ R + + ++
Sbjct: 141 GNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKI 200
Query: 174 VVGLPLG 180
G PL
Sbjct: 201 AAGEPLT 207
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), C-domain
{Escherichia coli [TaxId: 562]}
Length = 79
Score = 61.7 bits (150), Expect = 6e-13
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 189 AIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGL 248
++M NL+G L +P +HWYDK E+R RK+GH+ + S
Sbjct: 4 SVMINLIGSDVNY-----------DWLKLPLVHLHWYDK-EVRPGRKVGHLNLTDSDTSR 51
Query: 249 VESRLNSLLK 258
+ + L +L+
Sbjct: 52 LTATLEALIP 61
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 61.5 bits (149), Expect = 3e-11
Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 9/185 (4%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVE 60
+ +E A G+P +++ G G +A + EE + L ++
Sbjct: 22 AHTMEEALAVAADVGFPCIIRP-SFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLID 80
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICH---IVKAPA-AVPWKISELATDV 116
+ KE + VVR ++ + + +E I I APA + K ++ +
Sbjct: 81 ESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNA 140
Query: 117 AHKAVSSL--EGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAV 174
+ + + E G NG++++ E+ PR S ++ + +
Sbjct: 141 SMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLA 200
Query: 175 VGLPL 179
VG L
Sbjct: 201 VGYTL 205
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 53.9 bits (129), Expect = 9e-09
Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 9/180 (5%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAI--TALGGFDRGLYVE 60
V +E A K+ GYPL+V++ GR + E +L D + ++
Sbjct: 19 VTAIEMAVEKAKEIGYPLVVRA-SYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLD 77
Query: 61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATD----V 116
+ E+ V + + +L ++E I + + A + + +S+ D
Sbjct: 78 HFLDDAVEVDVDAICDGEM-VLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 136
Query: 117 AHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVG 176
K L+ G+ V+ N ++ L EV PR + ++ + R + G
Sbjct: 137 VQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAG 195
>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide
transformylase PurT, C-domain {Escherichia coli [TaxId:
562]}
Length = 74
Score = 49.4 bits (118), Expect = 1e-08
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 187 PAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSM 246
PAA +L + + + + A+ + + KPE+ R++G S+
Sbjct: 2 PAA-SAVILPQLTSQNVTF---DNVQNAVG-ADLQIRLFGKPEIDGSRRLGVALATAESV 56
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 47.9 bits (113), Expect = 5e-07
Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 8/185 (4%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYD----GRGNAVAKSEEELSSAITALGGF-DRGL 57
+D++ R K+ GYP+++K+ ++ + A F + +
Sbjct: 25 GDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMV 84
Query: 58 YVEKWAPFVKELAVIVVR-GRDKSILCYPVVETIHKENICHIVKAP-AAVPWKISELATD 115
Y+EK+ + + + V+ G+ +I ++ + + + +AP + ++ +
Sbjct: 85 YMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGE 144
Query: 116 VAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVV 175
KA + G E + N G+ E+ R T ++ +R
Sbjct: 145 RCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAA 203
Query: 176 GLPLG 180
G PL
Sbjct: 204 GQPLS 208
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 46.3 bits (109), Expect = 2e-06
Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 33/174 (18%)
Query: 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL-------GGFDRGLYVEK 61
+ + ++VK A GRG +A S EE L ++E+
Sbjct: 19 KYESPEDIDGTVIVKFPG-ARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEE 77
Query: 62 WAPFVKELAVIVVR-------------GRDKSILCYPVVETIHKENI------CHIVKAP 102
+ + +I + + + P
Sbjct: 78 YVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIP 137
Query: 103 AAVPWKISELATDVAHKAVSSLEGA------GIFAVELFWTNNGQILLNEVAPR 150
+ + ++ K V+ + G F ++ N ++++ E++ R
Sbjct: 138 VVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSAR 191
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 40.7 bits (94), Expect = 2e-04
Identities = 24/171 (14%), Positives = 44/171 (25%), Gaps = 30/171 (17%)
Query: 9 ARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP---- 64
P++VK A G+G +AK E+ G R ++
Sbjct: 19 VYEDPDDIEKPVIVKPHG-AKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYV 77
Query: 65 ---------------FVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVP--- 106
EL I R + E I
Sbjct: 78 LGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV 137
Query: 107 --WKISELATDVAHKAVSSLEGAG-----IFAVELFWTNNGQILLNEVAPR 150
+ + + V + E F +E +T + + ++ E++ R
Sbjct: 138 LRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISAR 188
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 40.3 bits (93), Expect = 2e-04
Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 18/201 (8%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
++E A ++ G P+++K+ LA EE ++ L G G +
Sbjct: 22 FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRI 81
Query: 63 ---APFVKELAVIVVRGRDKSILCYPVVETIHKE--------NICHIVKAPA-----AVP 106
E A +V + +L + + +PA V
Sbjct: 82 VIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVH 141
Query: 107 WKISELATDVAHKAVSS--LEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYT 164
+ E K +++ G L G + E R + I
Sbjct: 142 QRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDLETQPIMLRMK 201
Query: 165 SQFEQHMRAVVGLPLGDPSMK 185
S + A L + + +
Sbjct: 202 SDLVELCLAACESKLDEKTSE 222
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 37.3 bits (85), Expect = 0.002
Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 9/152 (5%)
Query: 3 VNDLESARRAGKQFGYPLMVKSKRLAYDGR--GNAVAKSEEELSSAITALGGF-DRGLYV 59
D E A R + FGYP+++K ++ LGGF + Y+
Sbjct: 21 ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYI 80
Query: 60 EKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHK 119
+++ + V G +++I N +A + + A +
Sbjct: 81 QEYVEKPGRDIRVFVVG-ERAIAAIYRRSAHWITNTARGGQAENCPLTEEVARLSVKAAE 139
Query: 120 AVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
AV A +L+NEV
Sbjct: 140 AVGGGVVAVDLFES-----ERGLLVNEVNHTM 166
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 35.9 bits (81), Expect = 0.006
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 3/154 (1%)
Query: 1 MEVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
E + G P++VK R + V + A + L +
Sbjct: 26 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 85
Query: 61 KWAPFVKELAVIVVRGRDKSILCYP---VVETIHKENICHIVKAPAAVPWKISELATDVA 117
+ +A++ + + PA + +
Sbjct: 86 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 145
Query: 118 HKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
KA ++L G +++ ++GQ L E P
Sbjct: 146 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 179
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 35.8 bits (81), Expect = 0.006
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 15/164 (9%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEK 61
E + S + + G + VK+ G + + EE + A++ +D + +E+
Sbjct: 25 ESANNWSWDKIVAELGNIVFVKAANQGS-SVGISRVTNAEEYTEALSDSFQYDYKVLIEE 83
Query: 62 WAPFVKELAVIVVRGRDKSILCYPVV--------------ETIHKENICHIVKAPAAVPW 107
+EL V V+ + +N + PA +
Sbjct: 84 AVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSP 143
Query: 108 KISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
++++ +A A L G ++ N L E P
Sbjct: 144 EVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLP 187
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 31.6 bits (70), Expect = 0.13
Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 20/179 (11%)
Query: 14 KQFGYPLMVK------SKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVK 67
F YP+ VK S + + + + E + + E +
Sbjct: 31 ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLG 90
Query: 68 ELAVIVVRGRDKSILCYPVVETIHKE-----NICHIVKAPAAVPWKISELATDVAHKAVS 122
A +VV D+ L Y + + + ++ PA + + + K
Sbjct: 91 NSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYK 150
Query: 123 SLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGD 181
+L G+ V++F +NG+I+LNEV P + + S++ + M A G+ L +
Sbjct: 151 TLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTSY--------SRYPRMMAA-AGISLPE 200
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 29.4 bits (66), Expect = 0.42
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 404 DLRARMQQYMEDMRDDVLTKAEKLQK 429
+LR R+ ++ +R +L A+ LQK
Sbjct: 111 ELRVRLASHLRKLRKRLLRDADDLQK 136
Score = 29.0 bits (65), Expect = 0.62
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 404 DLRARMQQYMEDMRDDVLTKAEKLQKD 430
+AR+ MED+R ++ ++Q
Sbjct: 78 AAQARLGADMEDVRGRLVQYRGEVQAM 104
Score = 27.9 bits (62), Expect = 1.3
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 404 DLRARMQQYMEDMRDDVLTKAEKLQKD 430
D+R R+ QY +++ + E+L+
Sbjct: 89 DVRGRLVQYRGEVQAMLGQSTEELRVR 115
Score = 27.1 bits (60), Expect = 2.5
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 403 ADLRARMQQYMEDMRDDVLTKAEKLQK 429
+++A + Q E++R + + KL+K
Sbjct: 99 GEVQAMLGQSTEELRVRLASHLRKLRK 125
>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo
sapiens), gamma-chain [TaxId: 9606]}
Length = 86
Score = 27.7 bits (61), Expect = 0.74
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 132 VELFWTNNGQILLNEVAPRPHNSGHHTIES 161
+ + ++ +I + A SG +
Sbjct: 30 IRINLVSSKKITEFDPAIVISPSGKYNAVK 59
>d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 155
Score = 27.4 bits (60), Expect = 2.0
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 307 AHRT-PDLMFSYASSAHERGIEIIIAG-AGGAAHLPGMVAARTPLPVIGV--PVRASALD 362
H+T P L YA S + II G G + H + A TPLP+ GV P LD
Sbjct: 3 GHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLD 62
Query: 363 GLDSLLSIVQMPRGVPVATVAINNAT 388
S I R + + AI+
Sbjct: 63 VNKSKTHISVNGRKIRMRCRAIDGDV 88
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 28.1 bits (62), Expect = 2.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 405 LRARMQQYMEDMRDDVLTK-AEKLQKDGWESYL 436
+A + +E+MRD+ L+K Q YL
Sbjct: 714 FKAGVLGNLEEMRDERLSKIISMFQA-HIRGYL 745
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 28.1 bits (62), Expect = 2.8
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 405 LRARMQQYMEDMRDDVLTK-AEKLQK 429
+A + +E+MRDD L + Q
Sbjct: 718 FKAGLLGLLEEMRDDKLAEIITATQA 743
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 27.2 bits (59), Expect = 3.0
Identities = 14/75 (18%), Positives = 25/75 (33%)
Query: 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337
S + + K L F+V + +FSYA+ + I I + G +
Sbjct: 15 SDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYS 74
Query: 338 HLPGMVAARTPLPVI 352
G +P +
Sbjct: 75 FTVGGSEILFEVPEV 89
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 27.4 bits (59), Expect = 3.2
Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 10/185 (5%)
Query: 2 EVNDLESARRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-------ALGGFD 54
E + K+ G+P+M+K+ + G G + + E E G
Sbjct: 48 CCTSPEDGLQKAKRIGFPVMIKA---SEGGGGKGIRQVEREEDFIALYHQAANEIPGSPI 104
Query: 55 RGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELAT 114
+ + A ++ + G + S+ + I A E+
Sbjct: 105 FIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEK 164
Query: 115 DVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAV 174
+ L+ ++G+ E+ PR T + ++
Sbjct: 165 AAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIA 224
Query: 175 VGLPL 179
+G+P+
Sbjct: 225 MGIPM 229
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 27.7 bits (60), Expect = 3.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 382 VAINNATNAGLLAVRMLGFGDAD 404
+A+N+AT A LA+R+ G D
Sbjct: 40 LALNSATAALHLALRVAGVKQDD 62
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF
{Bacillus megaterium [TaxId: 1404]}
Length = 239
Score = 27.2 bits (59), Expect = 3.4
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 9/151 (5%)
Query: 170 HMR-AVVGLPLGDPSMKTPAAIMYNLLGEAE---GERGFYLAHQLIGKALSIPGATVHWY 225
HM+ ++G GDP + T + LL +A+ L Q + +
Sbjct: 8 HMKLYIIGAGPGDPDLITVKGL--KLLQQADVVLYAD--SLVSQDLIAKSKPGAEVLKTA 63
Query: 226 DKPEMRQQRKMGHITIVGSSMGLVESRLNSLLK-EDSSDCQFKTVLPRIGIIMGSDSDLP 284
M G + V + ++ K I I+ G S
Sbjct: 64 GMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFA 123
Query: 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315
A LT+ + V + A +
Sbjct: 124 AAAAAEAELTIPDLTQTVILTRAEGRTPVPE 154
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 27.7 bits (60), Expect = 3.7
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334
++L V +V H + + + RG E+ +A G
Sbjct: 382 GQDELLDWLQGEPRVVLV--HGEEEKLLALGKLLALRGQEVSLARFG 426
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 27.4 bits (60), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 405 LRARMQQYMEDMRDDVLTK-AEKLQK 429
RA Y+E +R D L ++QK
Sbjct: 689 FRAGQVAYLEKIRADKLRAACIRIQK 714
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 26.9 bits (58), Expect = 6.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 382 VAINNATNAGLLAVRMLGFGDADLRARMQQYMEDM 416
VA+++AT +A+ LG G+ D
Sbjct: 50 VAVSSATAGMHIALMALGIGEGDEVITPSMTWVST 84
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide
synthetase (GAR-syn), domain 2 {Thermotoga maritima
[TaxId: 2336]}
Length = 220
Score = 25.8 bits (55), Expect = 9.8
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 EVNDLESARRAGKQFGYPLMVK 23
E R K+F P ++K
Sbjct: 21 VAETPEELREKIKKFSPPYVIK 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,575,406
Number of extensions: 72598
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 43
Length of query: 438
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,199,356
Effective search space: 419774600
Effective search space used: 419774600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.5 bits)