BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013663
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 326 bits (836), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/443 (41%), Positives = 275/443 (62%), Gaps = 21/443 (4%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D +++ LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
+L+EVR L PH+ N+ EYMLQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSEN----------- 353
+PVL++ M Y+D D L++ EEDE++PD +QD++PRFH SR ++
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 354 -PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412
E DDDD ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESG 417
Query: 413 VLALGAIAEGCIKGLYPHLSEVI 435
+L LGAIAEGC++G+ P+L E+I
Sbjct: 418 ILVLGAIAEGCMQGMIPYLPELI 440
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 183/443 (41%), Positives = 268/443 (60%), Gaps = 21/443 (4%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIXIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D + + LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALXLHIDSFTENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
L+EVR L PH N+ EY LQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 XLLEVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSEN----------- 353
+PVL++ Y+D D L++ EEDE++PD +QD++PRFH SR ++
Sbjct: 301 IPVLVNGXKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 354 -PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412
E DDDD ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESG 417
Query: 413 VLALGAIAEGCIKGLYPHLSEVI 435
+L LGAIAEGC +G P+L E+I
Sbjct: 418 ILVLGAIAEGCXQGXIPYLPELI 440
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 314 bits (804), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 176/431 (40%), Positives = 263/431 (61%), Gaps = 22/431 (5%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D +++ LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
+L+EVR L PH+ N+ EYMLQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364
+PVL++ M Y+D D L++ EEDE++PD +QD+ S D ++
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIGGSGGSG-------------DTISD 347
Query: 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424
WNLRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+ +L LGAIAEGC+
Sbjct: 348 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCM 404
Query: 425 KGLYPHLSEVI 435
+G+ P+L E+I
Sbjct: 405 QGMIPYLPELI 415
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/429 (39%), Positives = 251/429 (58%), Gaps = 31/429 (7%)
Query: 7 WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
W+P EQG +I +LL++ SP +T ++ +PDFNNYL F+L + + +
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
R +GL+LKNN++ +++ +IKSE L +G + IR+TVG +++ + G +
Sbjct: 64 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
W +LL L + LDS D N EGA AL KICED ++LDSDV + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
QFF+ +R ++ VNQFI+ AL + +D +++ LF L+ D EVRK VC A
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
+L+EVR L PH+ N+ EYMLQ +D D++VALEACEFW + E + + L LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366
+PVL++ M Y+D D L L G DD ++ WN
Sbjct: 301 IPVLVNGMKYSDIDIIL------------------------LKGDVEGGSGGDDTISDWN 336
Query: 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426
LRKCSAAALDVL+NV+ DE+LP ++P+++ L W +E+ +L LGAIAEGC++G
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQG 393
Query: 427 LYPHLSEVI 435
+ P+L E+I
Sbjct: 394 MIPYLPELI 402
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 178/445 (40%), Gaps = 88/445 (19%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
++ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQ-------GRPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +LS D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEG 422
+ + W+ R+AAV+A G+I EG
Sbjct: 375 IK---NPDWRYRDAAVMAFGSILEG 396
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 176/445 (39%), Gaps = 88/445 (19%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAE-------QGRPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEG 422
+ + W+ R+AAV+A G I EG
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEG 396
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/443 (22%), Positives = 173/443 (39%), Gaps = 84/443 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291
P VR ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW----- 283
Query: 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGS 351
SN+ D+E + E E+ + +P H+S+ +
Sbjct: 284 --------------------SNVC---DEEMDLAIEASEAA----EQGRPPEHTSKFYAK 316
Query: 352 EN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399
+ D++D + WN K + L +L+ D+I+P ++P I+ +
Sbjct: 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376
Query: 400 ASGDEAWKDREAAVLALGAIAEG 422
+ W+ R+AAV+A G I EG
Sbjct: 377 ---NPDWRYRDAAVMAFGCILEG 396
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 132/315 (41%), Gaps = 64/315 (20%)
Query: 127 AGWLELLQALVTCLDSNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185
W EL++ +V + +++ A + AL +CE D L NI + +
Sbjct: 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA----DPQSQALVSSSNNILIA-I 184
Query: 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG-----LFLLSNDPSAEVRKL 240
+Q QS TS + + L ++N L S +F+ + +G + ++ AE ++
Sbjct: 185 VQGAQSTETS-KAVRLAALN---ALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 241 VCAAFNLLIEVRP---SFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFE----- 291
AAF L ++ +F++P++ L+ + K +D VA EFW + E
Sbjct: 241 QAAAFGCLCKIMSLYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 292 ----AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347
AQ P L+ + L + +D+ P +
Sbjct: 301 AYELAQFPQSPLQSYNFALSSI---------------------------KDVVPNLLNLL 333
Query: 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWK 407
+E+PEDDD WN+ + A L + + G+ IL ++ ++ ++A W+
Sbjct: 334 TRQNEDPEDDD------WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN---WR 384
Query: 408 DREAAVLALGAIAEG 422
+REAAV+A G+I +G
Sbjct: 385 NREAAVMAFGSIMDG 399
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/443 (22%), Positives = 173/443 (39%), Gaps = 84/443 (18%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291
P VR ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW----- 283
Query: 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGS 351
SN+ D+E + E E+ + +P H+S+ +
Sbjct: 284 --------------------SNVC---DEEMDLAIEASEAA----EQGRPPEHTSKFYAK 316
Query: 352 EN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399
+ D++D + WN K + L +L+ D+I+P ++P I+ +
Sbjct: 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376
Query: 400 ASGDEAWKDREAAVLALGAIAEG 422
+ W+ R+AAV+A G I EG
Sbjct: 377 ---NPDWRYRDAAVMAFGCILEG 396
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 132/315 (41%), Gaps = 64/315 (20%)
Query: 127 AGWLELLQALVTCLDSNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185
W EL++ +V + +++ A + AL +CE D L NI + +
Sbjct: 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA----DPQSQALVSSSNNILIA-I 184
Query: 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG-----LFLLSNDPSAEVRKL 240
+Q QS TS + + L ++N L S +F+ + +G + ++ AE ++
Sbjct: 185 VQGAQSTETS-KAVRLAALN---ALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 241 VCAAFNLLIEVRP---SFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFE----- 291
AAF L ++ +F++P++ L+ + K +D VA EFW + E
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 292 ----AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347
AQ P L+ + L + +D+ P +
Sbjct: 301 AYELAQFPQSPLQSYNFALSSI---------------------------KDVVPNLLNLL 333
Query: 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWK 407
+E+PEDDD WN+ + A L + + G+ IL ++ ++ ++A W+
Sbjct: 334 TRQNEDPEDDD------WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN---WR 384
Query: 408 DREAAVLALGAIAEG 422
+REAAV+A G+I +G
Sbjct: 385 NREAAVMAFGSIMDG 399
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 176/445 (39%), Gaps = 88/445 (19%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQ-------GRPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEG 422
+ + W+ R+AAV+A G I EG
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEG 396
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 176/445 (39%), Gaps = 88/445 (19%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 60
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
+ W EL+ LV + N HM E ++A+ IC+DI P+ L N
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NE 172
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F++ +
Sbjct: 173 ILTAIIQGMRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 233 PSAEVRKLVCAAFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289
P VR V A NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 229 PDTRVR--VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW--- 283
Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
SN+ + D ++ +E E +P H+S+ +
Sbjct: 284 ----------------------SNVCDEEMDLAIEASEAAEQ-------GRPPEHTSKFY 314
Query: 350 GSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397
+ D++D + WN K + L +L+ D+I+P ++P I+
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374
Query: 398 LSASGDEAWKDREAAVLALGAIAEG 422
+ + W+ R+AAV+A G I EG
Sbjct: 375 IK---NPDWRYRDAAVMAFGCILEG 396
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/446 (22%), Positives = 172/446 (38%), Gaps = 90/446 (20%)
Query: 16 EICRLLEQQISPSSTA-DKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVEIRQAAGLL 74
E+ +LE+ +SP + + P F L+ +LA G S R AAGL
Sbjct: 8 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQ 66
Query: 75 LKNNLRTAYKSMSPSNQQY-----------IKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
+KN+L + + QQ +K+ +L LG S + +
Sbjct: 67 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 126
Query: 124 GGIAGWLELLQALVT-CLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINI 180
++ W EL+ LV + N H E ++A+ IC+DI P+ L N
Sbjct: 127 IPVSQWPELIPQLVANVTNPNSTEHXKESTLEAIGYICQDIDPEQLQDKS--------NE 178
Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SND 232
L ++Q + S + L + N L+ S F + D+ + F+ +
Sbjct: 179 ILTAIIQGXRKEEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIXQVVCEATQC 234
Query: 233 PSAEVRKLVCAAFNLLIEVRP---SFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHS 288
P VR AA L+++ + E + LF ++ K D+VAL+ EFW
Sbjct: 235 PDTRVR---VAALQNLVKIXSLYYQYXETYXGPALFAITIEAXKSDIDEVALQGIEFW-- 289
Query: 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348
SN+ + D ++ +E E +P H+S+
Sbjct: 290 -----------------------SNVCDEEXDLAIEASEAAEQG-------RPPEHTSKF 319
Query: 349 HGSEN------------PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQA 396
+ + D++D + WN K + L +LS D+I+P ++P I+
Sbjct: 320 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKE 379
Query: 397 KLSASGDEAWKDREAAVLALGAIAEG 422
+ + W+ R+AAV A G+I EG
Sbjct: 380 HIK---NPDWRYRDAAVXAFGSILEG 402
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 127/314 (40%), Gaps = 74/314 (23%)
Query: 134 QALVTCLDSNDINHM-EGAMDALSKICEDI-PQVLDSDVPGLAECPINIFLPRLLQFFQS 191
Q + + N HM E ++A+ IC+DI P+ L N L ++Q +
Sbjct: 7 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--------NEILTAIIQGMRK 58
Query: 192 PHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL------SNDPSAEVRKLVCA 243
S + L + N L+ S F + D+ + F++ + P VR V A
Sbjct: 59 EEPS-NNVKLAATN---ALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR--VAA 112
Query: 244 AFNL--LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300
NL ++ + ++E ++ LF ++ K D+VAL+ EFW
Sbjct: 113 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW-------------- 158
Query: 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN------- 353
SN+ + D ++ +E E +P H+S+ +
Sbjct: 159 -----------SNVCDEEMDLAIEASEAAEQG-------RPPEHTSKFYAKGALQYLVPI 200
Query: 354 -----PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKD 408
+ D++D + WN K + L +L+ D+I+P ++P I+ + + W+
Sbjct: 201 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK---NPDWRY 257
Query: 409 REAAVLALGAIAEG 422
R+AAV+A G I EG
Sbjct: 258 RDAAVMAFGCILEG 271
>pdb|1WVT|A Chain A, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|B Chain B, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
pdb|1WVT|C Chain C, Crystal Structure Of Uncharacterized Protein St2180 From
Sulfolobus Tokodaii
Length = 172
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 404 EAWKDREAAVLALGAIAE-----GCIKGLYPHLSEVI 435
E WKD E V ALG + E G + LYP LSEVI
Sbjct: 19 EVWKDSEI-VKALGDLDELNSVLGVVSSLYPELSEVI 54
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 202 GSVNQFIML-MPSALFVSMDQYL-----QGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS 254
GSV++++ L + F++ Q L L+ L DP + K A+ LI+ P+
Sbjct: 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAY--LIDRDPT 65
Query: 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301
+ P L L L +NKD ++ LE EF++ +L + ++E
Sbjct: 66 YFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE 112
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287
L DP + K A+ LI+ P++ P L L L +NKD ++ LE EF++
Sbjct: 35 LCQADPDLDSDKDETGAY--LIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYN 92
Query: 288 SYFEAQLPHENLKE 301
+L + ++E
Sbjct: 93 ITSLIKLVKDKIRE 106
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 291 EAQLPHENLKEFLPRLV----PVLLSNMIYADDDESLVEAEED-ESLPDRDQDLKPRFHS 345
+A+ +E +KEF+ + P++ + + + + L++A +D P RD D PR +
Sbjct: 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYV 211
Query: 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEILPTLMPVIQAKLSASGD 403
+R P + D+ K ++ VF GDEI + P I K++
Sbjct: 212 ARSFDINKPGTEIKDL-------KGGVLGGAIIQGVFKVGDEI--EIRPGI--KVTEGNK 260
Query: 404 EAWKDREAAVLALGA 418
WK +++L A
Sbjct: 261 TFWKPLTTKIVSLAA 275
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417
+D + +C AA + G E L ++P++ + DE RE + A
Sbjct: 248 NDSMSTTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDEL---REYCIQAFE 303
Query: 418 AIAEGCIKGLYPHLSEVI 435
+ C K +YPH+S +I
Sbjct: 304 SFVRRCPKEVYPHVSTII 321
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417
+D + +C AA + G E L ++P++ + DE RE + A
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDEL---REYCIQAFE 280
Query: 418 AIAEGCIKGLYPHLSEVI 435
+ C K +YPH+S +I
Sbjct: 281 SFVRRCPKEVYPHVSTII 298
>pdb|3ZU3|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh (Mr, Cleaved Histag)
pdb|3ZU4|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh And The 2-Pyridone
Inhibitor Pt172
pdb|3ZU5|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh And The 2-Pyridone
Inhibitor Pt173
Length = 405
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 361 IVNVWNLRKCSAAALDVLSNVFGDEIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419
I N NLR LD V + +L P I + ++ G E W+ A+L G +
Sbjct: 166 IGNAVNLR-----GLDTDKEVIKESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVL 220
Query: 420 AEGCIKGLYPHLSEVI 435
AEG + +L E I
Sbjct: 221 AEGAQTTAFTYLGEKI 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,078,738
Number of Sequences: 62578
Number of extensions: 471015
Number of successful extensions: 1102
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 66
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)