Query 013663
Match_columns 438
No_of_seqs 164 out of 1565
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 1.2E-64 2.5E-69 473.2 28.9 427 3-436 1-437 (885)
2 KOG2171 Karyopherin (importin) 100.0 9.4E-49 2E-53 389.7 34.9 380 14-437 3-393 (1075)
3 KOG1241 Karyopherin (importin) 100.0 2.2E-45 4.7E-50 349.5 24.2 367 16-433 2-406 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 2.6E-37 5.5E-42 285.7 27.0 367 17-434 6-409 (858)
5 KOG1991 Nuclear transport rece 100.0 4.8E-30 1E-34 252.0 32.0 385 14-423 3-449 (1010)
6 KOG1992 Nuclear export recepto 100.0 4.6E-29 1E-33 240.1 28.4 382 13-421 3-435 (960)
7 KOG2274 Predicted importin 9 [ 99.9 5.6E-22 1.2E-26 193.4 28.8 376 15-422 4-440 (1005)
8 KOG1993 Nuclear transport rece 99.9 3.9E-21 8.4E-26 185.1 25.7 383 17-425 2-477 (978)
9 COG5656 SXM1 Importin, protein 99.9 1.6E-20 3.5E-25 179.7 25.8 381 15-421 3-445 (970)
10 COG5657 CSE1 CAS/CSE protein i 99.9 4.8E-19 1E-23 173.7 28.1 372 19-417 8-427 (947)
11 KOG2021 Nuclear mRNA export fa 99.8 2.9E-16 6.3E-21 151.0 33.3 373 15-424 3-472 (980)
12 KOG2171 Karyopherin (importin) 99.8 1.8E-16 3.8E-21 160.0 32.3 360 18-436 82-519 (1075)
13 KOG2023 Nuclear transport rece 99.8 1.9E-16 4.1E-21 150.4 22.7 378 27-436 60-520 (885)
14 KOG1824 TATA-binding protein-i 99.7 6.9E-15 1.5E-19 144.8 28.7 342 55-420 9-401 (1233)
15 KOG2081 Nuclear transport regu 99.7 4.5E-15 9.8E-20 139.6 26.2 354 34-435 2-432 (559)
16 KOG2022 Nuclear transport rece 99.7 6.7E-13 1.5E-17 130.5 32.9 389 13-436 5-511 (982)
17 KOG1824 TATA-binding protein-i 99.6 1.7E-12 3.7E-17 128.2 29.0 332 47-436 816-1148(1233)
18 KOG1241 Karyopherin (importin) 99.6 3.2E-12 6.9E-17 124.0 27.6 373 17-436 174-641 (859)
19 KOG1242 Protein containing ada 99.6 1E-11 2.2E-16 118.9 30.6 373 13-434 52-458 (569)
20 COG5101 CRM1 Importin beta-rel 99.6 2.3E-13 4.9E-18 129.1 19.1 234 12-251 11-262 (1053)
21 PF08506 Cse1: Cse1; InterPro 99.5 4.3E-13 9.3E-18 126.1 12.7 203 198-423 58-286 (370)
22 KOG1242 Protein containing ada 99.5 1.3E-10 2.8E-15 111.4 28.6 363 6-433 87-496 (569)
23 KOG0212 Uncharacterized conser 99.4 1.1E-09 2.5E-14 103.2 26.8 286 90-434 81-378 (675)
24 PF01602 Adaptin_N: Adaptin N 99.3 1.3E-09 2.9E-14 109.9 27.8 327 18-424 45-409 (526)
25 PRK09687 putative lyase; Provi 99.3 9.7E-10 2.1E-14 100.1 23.5 193 52-290 27-220 (280)
26 PTZ00429 beta-adaptin; Provisi 99.3 1.3E-08 2.9E-13 103.8 34.0 256 23-292 76-363 (746)
27 PRK09687 putative lyase; Provi 99.3 1.2E-09 2.6E-14 99.5 23.4 225 17-291 25-250 (280)
28 KOG2020 Nuclear transport rece 99.3 2.8E-10 6.2E-15 117.8 21.1 238 10-253 5-261 (1041)
29 PF01602 Adaptin_N: Adaptin N 99.3 2.1E-09 4.4E-14 108.6 26.7 368 13-433 5-381 (526)
30 PRK13800 putative oxidoreducta 99.3 2.5E-09 5.5E-14 113.5 27.5 272 19-418 625-896 (897)
31 KOG0166 Karyopherin (importin) 99.3 7.1E-10 1.5E-14 105.8 20.0 308 62-426 77-398 (514)
32 KOG0166 Karyopherin (importin) 99.2 1.9E-09 4E-14 103.0 20.0 246 32-292 126-394 (514)
33 PF03810 IBN_N: Importin-beta 99.2 1E-10 2.2E-15 85.0 8.6 67 36-103 1-76 (77)
34 PLN03200 cellulose synthase-in 99.2 1.3E-08 2.9E-13 111.8 26.7 325 26-424 415-767 (2102)
35 PTZ00429 beta-adaptin; Provisi 99.1 4.4E-07 9.6E-12 92.8 33.8 366 15-431 35-407 (746)
36 PF10508 Proteasom_PSMB: Prote 99.1 1.7E-08 3.7E-13 100.1 23.3 272 98-423 43-321 (503)
37 PRK13800 putative oxidoreducta 99.1 1.7E-08 3.7E-13 107.2 24.5 243 50-419 623-865 (897)
38 PF10508 Proteasom_PSMB: Prote 99.1 1.6E-07 3.5E-12 93.3 29.5 252 26-292 49-320 (503)
39 KOG0211 Protein phosphatase 2A 99.1 3.3E-08 7.2E-13 99.9 24.4 351 11-427 232-592 (759)
40 COG5215 KAP95 Karyopherin (imp 99.1 3.9E-07 8.5E-12 86.6 29.3 367 13-435 322-725 (858)
41 KOG0212 Uncharacterized conser 99.1 1.3E-08 2.8E-13 96.2 18.8 278 98-435 5-293 (675)
42 PLN03200 cellulose synthase-in 99.0 1E-06 2.2E-11 97.4 31.7 329 24-421 455-811 (2102)
43 PF12755 Vac14_Fab1_bd: Vacuol 99.0 5.4E-09 1.2E-13 78.3 10.0 95 146-249 1-95 (97)
44 KOG0213 Splicing factor 3b, su 99.0 1E-06 2.2E-11 86.2 27.6 266 94-424 717-992 (1172)
45 KOG0915 Uncharacterized conser 98.9 4.6E-07 9.9E-12 95.0 25.6 292 105-435 969-1279(1702)
46 KOG0213 Splicing factor 3b, su 98.9 8.8E-06 1.9E-10 79.9 30.6 327 47-434 795-1155(1172)
47 COG5064 SRP1 Karyopherin (impo 98.9 4.8E-08 1E-12 87.1 14.2 270 11-290 67-397 (526)
48 PF12348 CLASP_N: CLASP N term 98.9 2.2E-07 4.8E-12 82.8 18.7 183 61-256 17-212 (228)
49 PF08389 Xpo1: Exportin 1-like 98.9 8.5E-09 1.8E-13 85.3 8.1 136 106-245 1-148 (148)
50 KOG1991 Nuclear transport rece 98.9 5.1E-06 1.1E-10 84.2 28.7 222 63-292 316-578 (1010)
51 PF12348 CLASP_N: CLASP N term 98.8 2.2E-07 4.7E-12 82.9 16.2 193 178-426 5-211 (228)
52 KOG0915 Uncharacterized conser 98.8 2.8E-06 6.2E-11 89.3 25.0 281 91-424 993-1309(1702)
53 KOG1410 Nuclear transport rece 98.7 1.2E-05 2.5E-10 78.2 25.4 254 13-270 3-309 (1082)
54 COG5181 HSH155 U2 snRNP splice 98.7 2.3E-05 5.1E-10 75.5 27.1 323 50-432 603-958 (975)
55 KOG1059 Vesicle coat complex A 98.7 4.3E-06 9.4E-11 81.7 20.8 189 86-292 137-366 (877)
56 PF12460 MMS19_C: RNAPII trans 98.7 4.2E-06 9.2E-11 81.4 21.2 204 62-270 201-414 (415)
57 KOG1248 Uncharacterized conser 98.6 0.0003 6.5E-09 73.2 32.2 291 82-432 601-910 (1176)
58 PF12755 Vac14_Fab1_bd: Vacuol 98.5 6.8E-07 1.5E-11 67.0 9.1 91 196-287 2-92 (97)
59 KOG1943 Beta-tubulin folding c 98.5 3E-05 6.5E-10 79.4 23.3 265 89-424 337-614 (1133)
60 KOG1240 Protein kinase contain 98.5 1.8E-05 3.9E-10 81.8 21.6 255 17-292 427-726 (1431)
61 PF12460 MMS19_C: RNAPII trans 98.5 2.5E-05 5.4E-10 76.1 21.9 208 93-312 189-413 (415)
62 KOG1062 Vesicle coat complex A 98.4 0.00045 9.9E-09 69.0 27.8 195 86-292 135-380 (866)
63 COG5181 HSH155 U2 snRNP splice 98.4 1.3E-05 2.8E-10 77.2 16.7 269 93-424 521-797 (975)
64 KOG1060 Vesicle coat complex A 98.4 0.00035 7.5E-09 69.6 26.6 179 101-292 151-387 (968)
65 PF12717 Cnd1: non-SMC mitotic 98.4 1.4E-05 3.1E-10 68.0 14.2 133 144-291 1-139 (178)
66 KOG0211 Protein phosphatase 2A 98.4 4.4E-05 9.5E-10 77.8 19.6 261 14-292 119-385 (759)
67 KOG1240 Protein kinase contain 98.4 4.7E-05 1E-09 78.8 19.7 288 50-396 424-746 (1431)
68 PF12717 Cnd1: non-SMC mitotic 98.4 5.8E-05 1.2E-09 64.3 17.5 133 106-250 1-139 (178)
69 KOG2956 CLIP-associating prote 98.3 5E-05 1.1E-09 71.2 17.1 203 6-222 276-491 (516)
70 KOG1248 Uncharacterized conser 98.3 0.0018 3.9E-08 67.6 28.7 204 177-436 651-872 (1176)
71 KOG4224 Armadillo repeat prote 98.3 0.00015 3.2E-09 66.0 18.5 277 18-315 129-427 (550)
72 KOG2956 CLIP-associating prote 98.2 0.00012 2.5E-09 68.8 17.4 210 82-307 276-492 (516)
73 KOG1967 DNA repair/transcripti 98.2 2.4E-05 5.2E-10 78.8 12.8 150 129-285 865-1018(1030)
74 COG5240 SEC21 Vesicle coat com 98.2 0.0064 1.4E-07 58.9 28.2 53 365-420 501-554 (898)
75 cd00020 ARM Armadillo/beta-cat 98.2 1.5E-05 3.3E-10 62.9 9.4 112 131-249 7-119 (120)
76 KOG1061 Vesicle coat complex A 98.1 0.00076 1.6E-08 67.3 22.2 126 32-164 65-193 (734)
77 cd00020 ARM Armadillo/beta-cat 98.1 1.7E-05 3.7E-10 62.6 9.1 112 180-291 7-120 (120)
78 KOG1077 Vesicle coat complex A 98.1 0.0045 9.7E-08 61.2 26.7 341 12-425 11-437 (938)
79 KOG1059 Vesicle coat complex A 98.1 0.00024 5.3E-09 69.9 17.8 107 178-291 142-248 (877)
80 COG5064 SRP1 Karyopherin (impo 98.1 0.00013 2.9E-09 65.6 14.4 223 62-291 82-314 (526)
81 PF04826 Arm_2: Armadillo-like 98.1 0.00049 1.1E-08 61.6 18.2 187 46-251 10-206 (254)
82 KOG4653 Uncharacterized conser 98.0 0.00071 1.5E-08 68.1 20.0 216 56-284 732-957 (982)
83 PF05918 API5: Apoptosis inhib 98.0 0.014 3.1E-07 57.6 28.6 307 50-425 22-349 (556)
84 KOG2259 Uncharacterized conser 98.0 0.00055 1.2E-08 66.9 18.1 188 97-292 202-440 (823)
85 KOG1967 DNA repair/transcripti 98.0 0.00051 1.1E-08 69.6 17.8 144 95-246 869-1020(1030)
86 PF14500 MMS19_N: Dos2-interac 98.0 0.0017 3.6E-08 58.6 19.2 241 136-434 4-251 (262)
87 KOG1062 Vesicle coat complex A 97.9 0.011 2.5E-07 59.4 25.7 190 88-292 102-324 (866)
88 KOG4224 Armadillo repeat prote 97.9 0.00037 8E-09 63.4 13.8 253 26-292 178-447 (550)
89 KOG1943 Beta-tubulin folding c 97.9 0.0035 7.6E-08 64.9 21.5 211 47-268 336-592 (1133)
90 COG5096 Vesicle coat complex, 97.8 0.012 2.5E-07 60.1 24.5 135 18-161 58-196 (757)
91 KOG2259 Uncharacterized conser 97.8 0.01 2.2E-07 58.5 22.4 112 132-256 199-316 (823)
92 KOG1820 Microtubule-associated 97.7 0.0033 7.2E-08 65.0 19.6 206 131-395 253-458 (815)
93 KOG4653 Uncharacterized conser 97.7 0.0022 4.8E-08 64.7 17.3 199 132-390 728-928 (982)
94 KOG2274 Predicted importin 9 [ 97.7 0.086 1.9E-06 54.1 28.4 215 90-318 446-672 (1005)
95 PF04826 Arm_2: Armadillo-like 97.7 0.0056 1.2E-07 54.9 17.8 211 11-241 11-253 (254)
96 PLN03076 ARF guanine nucleotid 97.7 0.064 1.4E-06 60.6 29.4 192 62-258 1148-1384(1780)
97 KOG4413 26S proteasome regulat 97.7 0.0034 7.5E-08 56.5 16.1 177 113-293 63-245 (524)
98 KOG1077 Vesicle coat complex A 97.7 0.073 1.6E-06 53.1 29.5 190 96-292 149-399 (938)
99 KOG1060 Vesicle coat complex A 97.7 0.06 1.3E-06 54.3 25.8 208 14-251 37-247 (968)
100 KOG1058 Vesicle coat complex C 97.6 0.015 3.3E-07 58.1 21.3 106 177-292 314-426 (948)
101 PF13513 HEAT_EZ: HEAT-like re 97.6 0.00015 3.2E-09 48.4 5.5 55 194-248 1-55 (55)
102 PF08569 Mo25: Mo25-like; Int 97.6 0.057 1.2E-06 50.5 25.2 189 96-294 79-286 (335)
103 PF05004 IFRD: Interferon-rela 97.6 0.014 3.1E-07 54.1 20.3 189 98-292 48-258 (309)
104 PF13646 HEAT_2: HEAT repeats; 97.6 0.00032 6.9E-09 52.0 7.5 85 96-205 2-88 (88)
105 KOG1020 Sister chromatid cohes 97.6 0.0035 7.6E-08 67.0 17.2 148 125-288 810-957 (1692)
106 PF05918 API5: Apoptosis inhib 97.6 0.0053 1.1E-07 60.6 17.6 159 97-273 27-189 (556)
107 KOG1820 Microtubule-associated 97.6 0.0081 1.7E-07 62.2 19.1 186 93-292 253-444 (815)
108 PF08167 RIX1: rRNA processing 97.6 0.0022 4.8E-08 53.7 12.7 133 128-270 22-163 (165)
109 COG5240 SEC21 Vesicle coat com 97.6 0.006 1.3E-07 59.0 16.8 249 10-283 258-547 (898)
110 KOG1020 Sister chromatid cohes 97.5 0.0033 7.1E-08 67.2 16.0 140 96-249 819-959 (1692)
111 TIGR02270 conserved hypothetic 97.5 0.014 3.1E-07 56.2 19.3 207 27-291 67-296 (410)
112 PF13646 HEAT_2: HEAT repeats; 97.5 0.0013 2.9E-08 48.5 9.2 86 133-246 1-88 (88)
113 PF02985 HEAT: HEAT repeat; I 97.4 0.00024 5.2E-09 40.9 3.7 31 390-423 1-31 (31)
114 KOG1993 Nuclear transport rece 97.4 0.061 1.3E-06 54.3 22.1 273 32-314 413-708 (978)
115 TIGR02270 conserved hypothetic 97.4 0.0067 1.5E-07 58.4 15.3 153 47-248 53-205 (410)
116 KOG2032 Uncharacterized conser 97.4 0.057 1.2E-06 51.6 20.8 116 130-253 257-374 (533)
117 PF05004 IFRD: Interferon-rela 97.4 0.073 1.6E-06 49.5 21.6 183 62-253 54-260 (309)
118 PF13513 HEAT_EZ: HEAT-like re 97.4 0.0002 4.2E-09 47.8 3.3 54 235-288 1-54 (55)
119 COG1413 FOG: HEAT repeat [Ener 97.4 0.063 1.4E-06 50.8 21.6 183 18-249 46-241 (335)
120 KOG2025 Chromosome condensatio 97.4 0.048 1E-06 54.4 20.6 223 46-289 39-292 (892)
121 COG1413 FOG: HEAT repeat [Ener 97.3 0.12 2.7E-06 48.8 23.3 185 49-290 44-241 (335)
122 KOG1078 Vesicle coat complex C 97.3 0.25 5.4E-06 50.1 29.0 52 364-420 479-531 (865)
123 PF02985 HEAT: HEAT repeat; I 97.3 0.0005 1.1E-08 39.6 3.9 30 181-210 1-30 (31)
124 COG5096 Vesicle coat complex, 97.3 0.24 5.2E-06 50.9 25.0 160 32-209 35-195 (757)
125 PF12719 Cnd3: Nuclear condens 97.3 0.028 6.2E-07 52.1 17.5 149 129-292 24-186 (298)
126 KOG0168 Putative ubiquitin fus 97.2 0.3 6.5E-06 50.0 27.1 181 16-211 168-366 (1051)
127 KOG1058 Vesicle coat complex C 97.2 0.32 7E-06 49.1 29.7 57 102-161 108-164 (948)
128 KOG2025 Chromosome condensatio 97.2 0.15 3.2E-06 51.1 21.8 225 15-248 40-292 (892)
129 KOG0414 Chromosome condensatio 97.2 0.0077 1.7E-07 63.1 13.5 161 112-292 896-1065(1251)
130 PF04510 DUF577: Family of unk 97.2 0.024 5.3E-07 46.5 13.7 147 93-251 3-165 (174)
131 KOG0392 SNF2 family DNA-depend 97.1 0.034 7.5E-07 58.8 17.5 142 62-211 88-239 (1549)
132 KOG1061 Vesicle coat complex A 97.1 0.24 5.2E-06 50.1 22.6 259 12-291 117-415 (734)
133 PF13251 DUF4042: Domain of un 97.1 0.0079 1.7E-07 50.7 10.7 145 108-252 1-176 (182)
134 KOG1949 Uncharacterized conser 97.0 0.047 1E-06 54.4 16.7 204 81-292 113-332 (1005)
135 PF12719 Cnd3: Nuclear condens 97.0 0.12 2.7E-06 47.9 19.0 118 92-210 26-144 (298)
136 PF08064 UME: UME (NUC010) dom 97.0 0.014 3E-07 44.8 10.5 79 233-314 27-105 (107)
137 PF08167 RIX1: rRNA processing 97.0 0.03 6.5E-07 46.9 13.3 132 177-312 22-162 (165)
138 PF10274 ParcG: Parkin co-regu 96.9 0.0059 1.3E-07 51.1 8.6 92 178-269 36-131 (183)
139 KOG2022 Nuclear transport rece 96.9 0.24 5.3E-06 50.8 21.2 193 107-315 438-642 (982)
140 KOG2062 26S proteasome regulat 96.9 0.044 9.6E-07 54.8 15.5 147 62-233 530-677 (929)
141 PF14500 MMS19_N: Dos2-interac 96.9 0.32 7E-06 44.0 21.6 157 100-269 6-170 (262)
142 PF01603 B56: Protein phosphat 96.9 0.091 2E-06 51.0 17.6 234 16-258 134-378 (409)
143 PF13251 DUF4042: Domain of un 96.8 0.024 5.2E-07 47.8 11.6 139 147-292 2-175 (182)
144 COG5218 YCG1 Chromosome conden 96.8 0.24 5.3E-06 48.6 19.4 176 13-204 9-194 (885)
145 KOG1517 Guanine nucleotide bin 96.8 0.14 3.1E-06 53.4 18.8 206 33-256 487-738 (1387)
146 KOG1992 Nuclear export recepto 96.8 0.1 2.3E-06 53.0 17.5 197 176-421 494-709 (960)
147 PLN03076 ARF guanine nucleotid 96.7 1.1 2.4E-05 51.1 26.3 269 16-292 1137-1490(1780)
148 KOG2160 Armadillo/beta-catenin 96.7 0.032 6.8E-07 51.4 11.9 143 142-292 94-241 (342)
149 PF05804 KAP: Kinesin-associat 96.7 0.28 6.1E-06 50.5 19.9 248 13-291 121-399 (708)
150 KOG1078 Vesicle coat complex C 96.6 0.18 3.9E-06 51.1 17.5 40 125-164 385-425 (865)
151 PF08569 Mo25: Mo25-like; Int 96.6 0.26 5.5E-06 46.2 17.6 186 62-251 87-284 (335)
152 PF10521 DUF2454: Protein of u 96.6 0.038 8.2E-07 50.8 12.1 143 126-274 114-277 (282)
153 KOG1517 Guanine nucleotide bin 96.6 0.27 5.8E-06 51.5 18.5 193 46-252 470-673 (1387)
154 smart00802 UME Domain in UVSB 96.5 0.044 9.5E-07 41.9 10.1 94 218-314 8-105 (107)
155 KOG2032 Uncharacterized conser 96.5 0.84 1.8E-05 44.0 21.3 75 218-292 255-330 (533)
156 KOG2137 Protein kinase [Signal 96.5 0.4 8.7E-06 48.3 19.0 247 15-288 239-493 (700)
157 KOG2549 Transcription initiati 96.4 0.13 2.7E-06 50.1 14.5 152 223-422 209-371 (576)
158 cd08050 TAF6 TATA Binding Prot 96.4 0.15 3.2E-06 48.2 15.1 153 224-420 181-339 (343)
159 PF04118 Dopey_N: Dopey, N-ter 96.4 0.2 4.3E-06 46.2 15.5 130 146-289 70-199 (307)
160 PF10363 DUF2435: Protein of u 96.4 0.025 5.3E-07 42.0 7.8 74 181-255 4-77 (92)
161 KOG0414 Chromosome condensatio 96.4 0.093 2E-06 55.4 14.4 181 49-252 920-1104(1251)
162 PF10363 DUF2435: Protein of u 96.4 0.037 7.9E-07 41.1 8.7 74 131-214 3-77 (92)
163 PF10274 ParcG: Parkin co-regu 96.4 0.026 5.6E-07 47.3 8.6 91 221-311 38-130 (183)
164 PF03378 CAS_CSE1: CAS/CSE pro 96.3 0.32 6.9E-06 47.5 17.4 239 128-421 23-274 (435)
165 PF05804 KAP: Kinesin-associat 96.3 1.7 3.8E-05 45.0 26.3 250 17-293 291-566 (708)
166 PF03224 V-ATPase_H_N: V-ATPas 96.2 0.19 4.1E-06 47.0 14.9 197 48-255 55-274 (312)
167 KOG0168 Putative ubiquitin fus 96.2 0.3 6.4E-06 50.0 16.4 190 182-424 169-367 (1051)
168 KOG1525 Sister chromatid cohes 96.2 0.15 3.3E-06 55.5 15.4 182 93-291 219-405 (1266)
169 PF08623 TIP120: TATA-binding 96.2 0.022 4.7E-07 47.3 7.2 93 176-271 5-115 (169)
170 KOG1949 Uncharacterized conser 96.1 0.21 4.5E-06 50.0 14.2 136 62-207 185-329 (1005)
171 KOG4535 HEAT and armadillo rep 96.0 0.54 1.2E-05 45.1 16.1 276 13-291 254-603 (728)
172 PF13001 Ecm29: Proteasome sta 95.9 2.1 4.5E-05 42.9 26.4 82 17-104 25-113 (501)
173 COG5098 Chromosome condensatio 95.9 0.57 1.2E-05 47.0 16.5 119 85-212 291-418 (1128)
174 KOG1243 Protein kinase [Genera 95.9 0.14 3E-06 51.3 12.4 185 49-252 331-517 (690)
175 KOG2933 Uncharacterized conser 95.9 0.39 8.5E-06 43.4 13.9 140 130-283 87-226 (334)
176 KOG1243 Protein kinase [Genera 95.8 0.083 1.8E-06 52.8 10.5 108 130-250 329-437 (690)
177 PF12530 DUF3730: Protein of u 95.7 1.4 3E-05 39.3 20.6 186 27-234 13-216 (234)
178 COG5218 YCG1 Chromosome conden 95.7 0.87 1.9E-05 44.9 16.5 169 106-285 24-193 (885)
179 KOG2149 Uncharacterized conser 95.7 0.29 6.2E-06 46.0 12.9 111 182-292 60-171 (393)
180 KOG4413 26S proteasome regulat 95.6 1.8 3.8E-05 39.7 21.3 217 62-292 93-334 (524)
181 COG5656 SXM1 Importin, protein 95.6 3.1 6.8E-05 42.4 28.2 283 91-432 458-769 (970)
182 PF08064 UME: UME (NUC010) dom 95.6 0.1 2.2E-06 40.1 8.3 92 176-269 7-103 (107)
183 COG5095 TAF6 Transcription ini 95.6 0.15 3.3E-06 45.6 10.1 144 232-424 209-362 (450)
184 KOG2149 Uncharacterized conser 95.5 0.19 4E-06 47.2 11.1 130 133-270 60-190 (393)
185 PF13001 Ecm29: Proteasome sta 95.5 0.26 5.6E-06 49.3 13.0 180 17-212 239-446 (501)
186 PF05536 Neurochondrin: Neuroc 95.5 2 4.4E-05 43.4 19.1 231 47-291 4-261 (543)
187 PF08623 TIP120: TATA-binding 95.5 0.34 7.3E-06 40.3 11.3 114 128-252 6-149 (169)
188 PF14664 RICTOR_N: Rapamycin-i 95.4 2.6 5.7E-05 40.3 19.0 220 23-253 33-272 (371)
189 KOG0392 SNF2 family DNA-depend 95.4 0.37 8.1E-06 51.5 13.7 169 110-292 750-926 (1549)
190 PF14664 RICTOR_N: Rapamycin-i 95.4 0.31 6.8E-06 46.5 12.5 132 114-256 4-143 (371)
191 KOG2062 26S proteasome regulat 95.3 0.33 7.1E-06 49.0 12.6 50 226-275 629-678 (929)
192 KOG2933 Uncharacterized conser 95.3 0.85 1.8E-05 41.4 14.1 115 178-292 86-200 (334)
193 KOG2021 Nuclear mRNA export fa 95.3 4 8.7E-05 41.7 28.4 182 84-266 370-580 (980)
194 PF07571 DUF1546: Protein of u 95.3 0.072 1.6E-06 39.6 6.3 68 364-432 19-90 (92)
195 PF08506 Cse1: Cse1; InterPro 95.2 2.2 4.8E-05 40.8 17.7 133 108-245 226-370 (370)
196 PF10521 DUF2454: Protein of u 95.1 0.32 7E-06 44.6 11.6 139 176-316 115-276 (282)
197 KOG1822 Uncharacterized conser 95.1 7.7 0.00017 44.0 30.0 229 16-250 877-1127(2067)
198 KOG1293 Proteins containing ar 95.1 0.56 1.2E-05 46.7 13.4 140 144-290 390-532 (678)
199 PF11865 DUF3385: Domain of un 94.8 0.52 1.1E-05 39.2 10.9 142 127-289 6-155 (160)
200 smart00802 UME Domain in UVSB 94.8 0.31 6.7E-06 37.2 8.7 90 176-267 7-101 (107)
201 COG5116 RPN2 26S proteasome re 94.8 0.52 1.1E-05 46.2 11.9 148 102-274 525-674 (926)
202 KOG2160 Armadillo/beta-catenin 94.7 0.68 1.5E-05 42.9 12.2 145 139-290 132-281 (342)
203 PF03378 CAS_CSE1: CAS/CSE pro 94.7 4.8 0.0001 39.4 26.4 94 149-250 177-272 (435)
204 PF01347 Vitellogenin_N: Lipop 94.6 2.9 6.3E-05 43.3 18.4 119 105-246 447-585 (618)
205 KOG1293 Proteins containing ar 94.5 1.2 2.6E-05 44.5 13.9 142 62-211 388-535 (678)
206 smart00638 LPD_N Lipoprotein N 94.4 5.1 0.00011 41.1 19.2 138 47-206 392-542 (574)
207 COG5116 RPN2 26S proteasome re 94.0 0.46 1E-05 46.5 9.9 118 96-232 554-673 (926)
208 PF11865 DUF3385: Domain of un 94.0 0.74 1.6E-05 38.2 10.1 142 92-250 9-157 (160)
209 PF05536 Neurochondrin: Neuroc 94.0 3 6.6E-05 42.1 16.2 243 130-425 4-265 (543)
210 KOG1525 Sister chromatid cohes 94.0 12 0.00027 41.4 26.5 217 62-290 61-328 (1266)
211 PF08767 CRM1_C: CRM1 C termin 93.9 3.3 7.1E-05 38.8 15.3 157 109-273 43-225 (319)
212 PF01603 B56: Protein phosphat 93.9 6.8 0.00015 38.1 21.4 200 85-292 144-371 (409)
213 KOG2081 Nuclear transport regu 93.8 7.6 0.00016 38.4 18.9 239 132-436 247-510 (559)
214 PF12830 Nipped-B_C: Sister ch 93.5 1.7 3.8E-05 37.1 11.7 126 178-309 6-138 (187)
215 cd08050 TAF6 TATA Binding Prot 93.4 0.59 1.3E-05 44.2 9.5 112 176-292 174-298 (343)
216 COG5098 Chromosome condensatio 93.3 6.9 0.00015 39.8 16.5 108 182-290 301-414 (1128)
217 KOG2549 Transcription initiati 93.3 4.8 0.0001 39.6 15.2 143 17-162 209-372 (576)
218 PF01347 Vitellogenin_N: Lipop 93.3 5.8 0.00013 41.1 17.5 164 49-243 432-615 (618)
219 KOG0567 HEAT repeat-containing 93.3 5.8 0.00013 35.4 16.5 91 130-248 186-278 (289)
220 PF11698 V-ATPase_H_C: V-ATPas 93.2 0.55 1.2E-05 36.4 7.3 70 131-209 43-115 (119)
221 PF03224 V-ATPase_H_N: V-ATPas 93.2 4.3 9.4E-05 37.9 14.9 146 136-292 110-270 (312)
222 KOG1822 Uncharacterized conser 93.1 5.7 0.00012 44.9 17.0 196 86-291 37-248 (2067)
223 PF08767 CRM1_C: CRM1 C termin 93.0 3.1 6.8E-05 38.9 13.7 136 181-316 72-225 (319)
224 KOG0946 ER-Golgi vesicle-tethe 92.9 13 0.00029 38.4 25.8 235 42-290 116-398 (970)
225 KOG0946 ER-Golgi vesicle-tethe 92.4 15 0.00033 38.0 25.8 158 86-253 75-244 (970)
226 PF04118 Dopey_N: Dopey, N-ter 92.3 9.4 0.0002 35.4 15.8 182 91-291 52-254 (307)
227 KOG0567 HEAT repeat-containing 92.1 4.2 9.1E-05 36.2 12.0 86 96-206 190-277 (289)
228 cd00256 VATPase_H VATPase_H, r 92.0 5.8 0.00013 38.5 14.2 188 47-251 227-426 (429)
229 KOG2137 Protein kinase [Signal 92.0 6.4 0.00014 40.1 14.8 141 117-270 374-516 (700)
230 cd00256 VATPase_H VATPase_H, r 91.9 13 0.00029 36.2 23.0 344 47-421 52-425 (429)
231 smart00638 LPD_N Lipoprotein N 91.7 18 0.00038 37.2 21.3 117 105-246 409-541 (574)
232 COG5095 TAF6 Transcription ini 91.3 1.6 3.4E-05 39.4 8.8 107 181-292 198-317 (450)
233 PF12054 DUF3535: Domain of un 91.1 17 0.00036 35.9 22.3 78 107-191 101-179 (441)
234 KOG4500 Rho/Rac GTPase guanine 90.6 17 0.00036 35.0 15.4 95 110-209 290-390 (604)
235 cd03568 VHS_STAM VHS domain fa 90.5 6.4 0.00014 32.0 11.1 76 178-253 35-113 (144)
236 PF09324 DUF1981: Domain of un 90.1 1.9 4.1E-05 31.5 7.0 67 221-287 17-84 (86)
237 PF11707 Npa1: Ribosome 60S bi 90.0 17 0.00037 34.2 16.4 159 133-293 58-239 (330)
238 PF09324 DUF1981: Domain of un 89.9 2.1 4.6E-05 31.3 7.2 70 177-246 14-84 (86)
239 KOG0413 Uncharacterized conser 89.7 4.7 0.0001 42.4 11.6 143 108-269 946-1090(1529)
240 PF12765 Cohesin_HEAT: HEAT re 89.7 0.82 1.8E-05 28.2 4.1 27 178-204 16-42 (42)
241 PF12783 Sec7_N: Guanine nucle 89.5 5.3 0.00011 33.4 10.4 106 145-250 36-146 (168)
242 cd03568 VHS_STAM VHS domain fa 89.3 3.2 6.9E-05 33.7 8.5 78 129-212 35-113 (144)
243 KOG2759 Vacuolar H+-ATPase V1 89.2 21 0.00046 34.1 19.7 347 48-422 65-439 (442)
244 KOG1851 Uncharacterized conser 88.8 10 0.00022 42.3 13.7 152 46-211 1524-1680(1710)
245 cd03561 VHS VHS domain family; 88.7 7 0.00015 31.2 10.1 99 104-213 15-116 (133)
246 PF08713 DNA_alkylation: DNA a 88.7 15 0.00033 31.8 13.4 142 94-261 52-195 (213)
247 KOG1837 Uncharacterized conser 88.5 6.5 0.00014 43.6 12.1 90 109-206 1517-1608(1621)
248 KOG0413 Uncharacterized conser 88.5 28 0.0006 37.1 15.9 179 104-288 483-682 (1529)
249 KOG3961 Uncharacterized conser 88.4 1.4 3.1E-05 37.6 5.9 91 178-268 112-205 (262)
250 PF12830 Nipped-B_C: Sister ch 88.2 15 0.00033 31.3 16.7 71 96-167 11-81 (187)
251 PF00514 Arm: Armadillo/beta-c 88.1 1.2 2.7E-05 27.1 4.2 30 179-208 11-40 (41)
252 PF08713 DNA_alkylation: DNA a 87.9 17 0.00037 31.5 14.8 156 32-217 35-192 (213)
253 KOG0929 Guanine nucleotide exc 87.7 41 0.00089 38.0 17.6 224 55-292 1043-1299(1514)
254 PF04078 Rcd1: Cell differenti 87.7 17 0.00037 32.5 12.4 144 149-297 68-224 (262)
255 KOG0803 Predicted E3 ubiquitin 87.6 7.1 0.00015 43.3 12.0 109 179-287 40-149 (1312)
256 cd03572 ENTH_epsin_related ENT 87.2 4.9 0.00011 31.5 7.9 91 114-209 19-119 (122)
257 cd03569 VHS_Hrs_Vps27p VHS dom 87.2 3.3 7.1E-05 33.6 7.3 98 104-212 19-117 (142)
258 PF11864 DUF3384: Domain of un 87.0 34 0.00074 34.0 23.0 177 108-292 5-207 (464)
259 PF12074 DUF3554: Domain of un 87.0 28 0.0006 32.9 17.9 199 48-255 22-240 (339)
260 cd03569 VHS_Hrs_Vps27p VHS dom 86.9 15 0.00032 29.8 12.2 76 178-253 39-117 (142)
261 PF04388 Hamartin: Hamartin pr 86.9 29 0.00063 36.2 15.6 94 176-271 66-161 (668)
262 cd03567 VHS_GGA VHS domain fam 86.7 3.4 7.4E-05 33.3 7.0 98 104-212 16-119 (139)
263 PF12530 DUF3730: Protein of u 86.6 23 0.00049 31.5 21.3 194 62-277 12-218 (234)
264 cd03567 VHS_GGA VHS domain fam 86.2 16 0.00035 29.4 11.0 75 179-253 37-119 (139)
265 KOG1851 Uncharacterized conser 86.2 39 0.00085 38.0 16.2 153 126-289 1521-1676(1710)
266 PF04388 Hamartin: Hamartin pr 85.8 23 0.00049 37.0 14.2 91 221-315 70-162 (668)
267 KOG2011 Sister chromatid cohes 85.8 57 0.0012 35.4 18.4 212 62-288 211-432 (1048)
268 PF11701 UNC45-central: Myosin 85.7 3.8 8.2E-05 33.9 7.1 131 143-287 17-155 (157)
269 PF12783 Sec7_N: Guanine nucle 85.5 9.4 0.0002 31.9 9.6 99 194-292 36-147 (168)
270 cd03561 VHS VHS domain family; 85.4 17 0.00037 29.0 11.1 77 178-254 35-116 (133)
271 PF12231 Rif1_N: Rap1-interact 85.4 36 0.00078 32.7 24.8 215 66-292 61-304 (372)
272 PF00514 Arm: Armadillo/beta-c 85.1 1.6 3.5E-05 26.5 3.6 27 132-158 13-39 (41)
273 PF11698 V-ATPase_H_C: V-ATPas 84.9 3.4 7.4E-05 32.1 6.0 73 49-123 44-116 (119)
274 KOG0891 DNA-dependent protein 84.9 92 0.002 37.4 19.3 208 93-315 481-699 (2341)
275 KOG2256 Predicted protein invo 84.8 48 0.001 33.7 16.5 54 239-292 398-458 (661)
276 KOG0929 Guanine nucleotide exc 84.4 61 0.0013 36.7 16.9 202 105-315 1049-1279(1514)
277 PF12333 Ipi1_N: Rix1 complex 84.3 4.7 0.0001 30.6 6.5 60 213-272 3-63 (102)
278 smart00288 VHS Domain present 84.1 8.8 0.00019 30.7 8.3 79 128-212 34-114 (133)
279 KOG3961 Uncharacterized conser 83.8 4.2 9E-05 34.9 6.4 91 217-311 114-205 (262)
280 PF00790 VHS: VHS domain; Int 83.5 9.6 0.00021 30.8 8.4 78 128-211 39-120 (140)
281 PF12333 Ipi1_N: Rix1 complex 83.4 2.9 6.2E-05 31.7 5.0 62 253-316 2-64 (102)
282 KOG2759 Vacuolar H+-ATPase V1 83.0 45 0.00099 32.0 13.6 72 179-251 365-439 (442)
283 PF00790 VHS: VHS domain; Int 82.0 25 0.00053 28.4 10.3 75 178-252 40-120 (140)
284 cd00197 VHS_ENTH_ANTH VHS, ENT 81.4 21 0.00045 27.6 9.4 77 126-208 32-114 (115)
285 PF08389 Xpo1: Exportin 1-like 81.4 18 0.00039 29.0 9.6 134 32-204 4-148 (148)
286 PF11935 DUF3453: Domain of un 81.4 39 0.00085 30.1 13.1 86 181-270 44-161 (239)
287 smart00288 VHS Domain present 79.8 29 0.00063 27.7 12.1 76 178-253 35-114 (133)
288 PF11701 UNC45-central: Myosin 79.0 4 8.6E-05 33.8 4.8 109 191-302 16-128 (157)
289 PF12074 DUF3554: Domain of un 78.8 59 0.0013 30.7 16.5 212 90-315 19-254 (339)
290 PF07571 DUF1546: Protein of u 78.6 12 0.00027 27.7 6.8 54 105-158 18-76 (92)
291 PF12765 Cohesin_HEAT: HEAT re 78.6 5 0.00011 24.7 3.9 39 116-154 2-41 (42)
292 PF03542 Tuberin: Tuberin; In 78.5 62 0.0014 30.8 15.5 116 194-315 211-329 (356)
293 KOG0889 Histone acetyltransfer 78.3 1.9E+02 0.004 36.1 19.1 162 131-292 984-1156(3550)
294 PF13981 SopA: SopA-like centr 78.3 16 0.00035 29.2 7.8 58 235-292 67-124 (135)
295 KOG3036 Protein involved in ce 77.8 47 0.001 29.5 10.8 101 192-293 137-249 (293)
296 KOG3036 Protein involved in ce 77.1 29 0.00063 30.8 9.4 116 129-251 121-248 (293)
297 KOG1848 Uncharacterized conser 77.0 39 0.00085 37.5 12.1 110 99-209 1003-1132(1610)
298 KOG4524 Uncharacterized conser 76.6 13 0.00029 39.2 8.5 94 178-271 801-898 (1014)
299 KOG2973 Uncharacterized conser 76.0 22 0.00048 32.6 8.7 57 363-421 256-315 (353)
300 smart00582 RPR domain present 76.0 24 0.00052 27.5 8.3 99 98-209 5-107 (121)
301 COG5537 IRR1 Cohesin [Cell div 75.2 46 0.001 33.5 11.3 100 141-251 285-387 (740)
302 smart00185 ARM Armadillo/beta- 74.9 5.5 0.00012 23.7 3.5 29 180-208 12-40 (41)
303 PF04510 DUF577: Family of unk 74.7 49 0.0011 27.6 9.8 148 131-290 3-163 (174)
304 cd03572 ENTH_epsin_related ENT 73.2 43 0.00093 26.3 10.8 72 178-249 36-118 (122)
305 KOG0889 Histone acetyltransfer 71.8 18 0.00039 43.9 8.8 92 177-270 46-146 (3550)
306 PF01465 GRIP: GRIP domain; I 70.8 11 0.00024 23.7 4.1 36 89-124 3-38 (46)
307 KOG4524 Uncharacterized conser 70.6 40 0.00087 35.9 10.2 93 88-191 795-900 (1014)
308 PF12397 U3snoRNP10: U3 small 70.2 29 0.00062 27.1 7.5 72 129-211 4-76 (121)
309 KOG2085 Serine/threonine prote 69.0 80 0.0017 30.3 10.9 80 177-256 338-420 (457)
310 KOG2122 Beta-catenin-binding p 68.7 98 0.0021 35.1 12.7 74 179-253 529-604 (2195)
311 cd03565 VHS_Tom1 VHS domain fa 68.5 42 0.00091 27.1 8.2 98 104-212 16-118 (141)
312 KOG1566 Conserved protein Mo25 68.4 1E+02 0.0022 28.6 14.6 111 182-292 168-287 (342)
313 PF14631 FancD2: Fanconi anaem 68.4 2.3E+02 0.005 32.7 23.5 192 34-241 360-574 (1426)
314 KOG2199 Signal transducing ada 66.0 76 0.0017 30.2 10.1 91 152-251 26-119 (462)
315 smart00185 ARM Armadillo/beta- 65.5 11 0.00025 22.3 3.5 26 133-158 14-39 (41)
316 KOG2011 Sister chromatid cohes 65.0 2.2E+02 0.0048 31.3 20.8 73 218-292 279-356 (1048)
317 KOG4500 Rho/Rac GTPase guanine 65.0 1.4E+02 0.0031 29.0 16.3 149 94-251 316-476 (604)
318 PF14868 DUF4487: Domain of un 64.7 1.7E+02 0.0037 29.8 13.4 79 85-163 471-555 (559)
319 PF14225 MOR2-PAG1_C: Cell mor 64.6 1.1E+02 0.0024 27.7 18.7 130 108-255 130-259 (262)
320 COG5537 IRR1 Cohesin [Cell div 63.5 51 0.0011 33.2 8.9 68 184-253 279-346 (740)
321 PF11841 DUF3361: Domain of un 63.5 85 0.0018 26.0 9.1 97 110-213 31-135 (160)
322 COG5231 VMA13 Vacuolar H+-ATPa 62.8 22 0.00047 32.8 5.9 72 131-209 356-428 (432)
323 PF14961 BROMI: Broad-minded p 62.1 1.2E+02 0.0027 33.5 12.0 70 96-165 164-236 (1296)
324 PF03130 HEAT_PBS: PBS lyase H 62.1 9.1 0.0002 20.8 2.2 26 109-141 1-26 (27)
325 KOG2973 Uncharacterized conser 61.6 98 0.0021 28.6 9.7 55 132-194 4-58 (353)
326 PF03542 Tuberin: Tuberin; In 61.2 1.5E+02 0.0033 28.2 12.2 111 177-291 138-264 (356)
327 KOG1837 Uncharacterized conser 60.3 54 0.0012 37.0 9.2 73 219-291 1539-1611(1621)
328 PF11707 Npa1: Ribosome 60S bi 60.3 1.5E+02 0.0033 27.9 13.1 107 182-288 58-184 (330)
329 PF12612 TFCD_C: Tubulin foldi 60.2 1.1E+02 0.0024 26.2 11.1 35 89-123 3-37 (193)
330 PLN03205 ATR interacting prote 59.9 1.7E+02 0.0036 28.2 15.6 200 111-314 302-548 (652)
331 cd00197 VHS_ENTH_ANTH VHS, ENT 59.9 77 0.0017 24.3 8.2 71 220-290 36-114 (115)
332 KOG4535 HEAT and armadillo rep 59.8 1.9E+02 0.004 28.7 25.7 100 62-161 58-180 (728)
333 smart00755 Grip golgin-97, Ran 59.4 18 0.00038 22.8 3.4 34 90-124 3-36 (46)
334 PF04078 Rcd1: Cell differenti 59.4 1.4E+02 0.003 27.0 17.4 113 132-251 96-219 (262)
335 PF14225 MOR2-PAG1_C: Cell mor 57.6 1.5E+02 0.0032 26.9 17.3 84 113-208 170-253 (262)
336 KOG0891 DNA-dependent protein 57.5 4.4E+02 0.0094 32.2 16.7 111 179-289 92-202 (2341)
337 PF14631 FancD2: Fanconi anaem 56.6 3.7E+02 0.008 31.1 21.0 177 62-251 446-641 (1426)
338 KOG1048 Neural adherens juncti 56.5 45 0.00097 34.6 7.5 62 15-80 233-304 (717)
339 PF11919 DUF3437: Domain of un 56.2 35 0.00077 25.1 5.1 57 197-254 6-62 (90)
340 PF12231 Rif1_N: Rap1-interact 56.2 1.9E+02 0.0042 27.7 28.0 137 106-251 59-205 (372)
341 KOG2213 Apoptosis inhibitor 5/ 55.6 2E+02 0.0043 27.7 17.9 225 110-398 41-288 (460)
342 KOG2153 Protein involved in th 55.3 2.5E+02 0.0055 28.8 15.0 141 130-293 209-355 (704)
343 PF11841 DUF3361: Domain of un 54.4 1.2E+02 0.0027 25.0 11.2 97 146-253 32-134 (160)
344 KOG1048 Neural adherens juncti 53.7 70 0.0015 33.2 8.4 73 129-210 230-305 (717)
345 PF14676 FANCI_S2: FANCI solen 53.7 1.3E+02 0.0028 24.9 10.0 117 70-204 37-156 (158)
346 KOG0803 Predicted E3 ubiquitin 53.1 4E+02 0.0086 30.4 19.9 203 4-214 27-268 (1312)
347 KOG1789 Endocytosis protein RM 52.9 2.2E+02 0.0048 31.4 11.7 138 146-292 1740-1884(2235)
348 PF08620 RPAP1_C: RPAP1-like, 51.6 25 0.00055 24.7 3.5 32 132-163 40-71 (73)
349 PF08146 BP28CT: BP28CT (NUC21 51.5 1.3E+02 0.0029 24.6 8.4 74 195-272 36-118 (153)
350 KOG2229 Protein required for a 50.9 2.7E+02 0.0058 27.8 12.9 154 117-286 3-161 (616)
351 PF10193 Telomere_reg-2: Telom 50.3 68 0.0015 24.8 6.2 77 182-258 5-87 (114)
352 PF00613 PI3Ka: Phosphoinositi 50.0 1.4E+02 0.003 25.4 8.6 114 8-143 4-123 (184)
353 cd03562 CID CID (CTD-Interacti 49.4 1.2E+02 0.0025 23.2 9.2 71 130-207 36-106 (114)
354 PF07539 DRIM: Down-regulated 49.2 35 0.00076 27.6 4.6 31 178-208 15-45 (141)
355 PF02847 MA3: MA3 domain; Int 48.3 1.2E+02 0.0026 23.0 9.8 100 16-123 4-109 (113)
356 KOG1087 Cytosolic sorting prot 47.7 57 0.0012 32.2 6.5 101 102-213 14-116 (470)
357 cd03565 VHS_Tom1 VHS domain fa 47.3 1.5E+02 0.0033 23.9 11.0 75 179-253 37-118 (141)
358 PF05327 RRN3: RNA polymerase 46.6 3.4E+02 0.0074 27.8 20.1 94 106-212 87-196 (563)
359 cd06561 AlkD_like A new struct 46.1 1.8E+02 0.004 24.6 12.9 130 8-152 67-196 (197)
360 PF12054 DUF3535: Domain of un 46.1 3.1E+02 0.0067 27.1 19.4 77 63-143 99-180 (441)
361 KOG3678 SARM protein (with ste 45.0 3.2E+02 0.0069 27.0 14.7 134 19-159 184-335 (832)
362 COG5234 CIN1 Beta-tubulin fold 44.7 1.2E+02 0.0026 31.4 8.2 148 92-251 241-417 (993)
363 PF14868 DUF4487: Domain of un 44.0 3.7E+02 0.008 27.5 21.9 55 367-424 496-555 (559)
364 PF12397 U3snoRNP10: U3 small 43.3 1.5E+02 0.0033 22.9 12.5 74 176-252 2-76 (121)
365 smart00567 EZ_HEAT E-Z type HE 42.9 40 0.00087 18.5 2.9 28 108-142 2-29 (30)
366 PF14668 RICTOR_V: Rapamycin-i 42.9 80 0.0017 22.2 5.0 52 368-422 4-59 (73)
367 KOG2256 Predicted protein invo 42.5 4E+02 0.0087 27.5 17.2 177 180-398 282-477 (661)
368 PF06685 DUF1186: Protein of u 42.2 2.6E+02 0.0056 25.1 13.5 30 225-254 115-146 (249)
369 PF08045 CDC14: Cell division 40.6 2.4E+02 0.0053 25.4 8.9 94 196-291 107-207 (257)
370 KOG2038 CAATT-binding transcri 40.4 4.7E+02 0.01 27.7 19.4 72 179-254 303-374 (988)
371 PF06685 DUF1186: Protein of u 40.4 2.8E+02 0.006 25.0 14.3 43 182-224 113-160 (249)
372 PF12422 Condensin2nSMC: Conde 39.8 2.1E+02 0.0045 23.4 11.0 94 65-158 43-146 (152)
373 PF11919 DUF3437: Domain of un 39.8 80 0.0017 23.3 4.8 52 237-289 5-56 (90)
374 PF05997 Nop52: Nucleolar prot 39.5 2.2E+02 0.0047 25.0 8.4 86 184-269 4-93 (217)
375 PF08146 BP28CT: BP28CT (NUC21 39.5 2.1E+02 0.0046 23.4 9.1 91 112-210 40-148 (153)
376 PF13925 Katanin_con80: con80 39.4 73 0.0016 26.5 5.2 54 113-166 46-104 (164)
377 cd07064 AlkD_like_1 A new stru 38.2 2.7E+02 0.0058 24.2 18.1 158 32-217 28-187 (208)
378 PF12726 SEN1_N: SEN1 N termin 38.0 4.8E+02 0.01 27.7 12.2 156 94-254 78-247 (727)
379 KOG2199 Signal transducing ada 37.5 1.4E+02 0.0031 28.5 7.0 78 127-210 41-119 (462)
380 KOG1087 Cytosolic sorting prot 37.2 3.8E+02 0.0083 26.7 10.3 75 178-252 36-114 (470)
381 COG5209 RCD1 Uncharacterized p 37.2 2.6E+02 0.0056 24.7 8.0 74 176-249 140-217 (315)
382 PF05327 RRN3: RNA polymerase 36.7 4.8E+02 0.011 26.7 19.7 107 178-292 71-194 (563)
383 cd00870 PI3Ka_III Phosphoinosi 36.7 2.5E+02 0.0054 23.4 11.1 117 8-143 5-124 (166)
384 KOG0267 Microtubule severing p 36.3 1.4E+02 0.0031 30.8 7.3 97 64-166 652-749 (825)
385 PF14961 BROMI: Broad-minded p 35.6 6.9E+02 0.015 28.2 14.6 133 131-272 161-315 (1296)
386 KOG4199 Uncharacterized conser 35.6 3.9E+02 0.0084 25.3 16.4 148 50-210 243-404 (461)
387 COG5369 Uncharacterized conser 35.4 1.4E+02 0.0031 29.9 7.0 110 179-289 430-543 (743)
388 KOG3678 SARM protein (with ste 35.3 4.5E+02 0.0098 26.0 17.1 169 108-292 163-337 (832)
389 COG5101 CRM1 Importin beta-rel 35.0 5.3E+02 0.012 26.7 30.1 266 128-428 189-519 (1053)
390 PHA02855 anti-apoptotic membra 35.0 1.6E+02 0.0034 24.3 6.0 57 86-142 69-130 (180)
391 PF14222 MOR2-PAG1_N: Cell mor 34.3 93 0.002 31.7 5.9 92 198-291 446-549 (552)
392 KOG2005 26S proteasome regulat 33.0 2.2E+02 0.0047 29.5 7.9 72 177-251 45-126 (878)
393 smart00544 MA3 Domain in DAP-5 31.9 2.3E+02 0.0049 21.5 10.4 100 16-123 4-109 (113)
394 COG5369 Uncharacterized conser 31.8 76 0.0016 31.7 4.5 73 130-209 472-545 (743)
395 PF13925 Katanin_con80: con80 30.9 1.1E+02 0.0025 25.3 5.0 58 370-430 45-107 (164)
396 KOG1410 Nuclear transport rece 30.7 6.5E+02 0.014 26.4 12.2 133 179-311 254-409 (1082)
397 PF04869 Uso1_p115_head: Uso1 30.0 4.7E+02 0.01 24.5 9.4 95 7-102 146-252 (312)
398 PF06628 Catalase-rel: Catalas 29.7 1.4E+02 0.0029 20.6 4.5 39 82-120 16-55 (68)
399 cd03571 ENTH_epsin ENTH domain 29.2 1.6E+02 0.0034 23.2 5.2 52 114-165 19-73 (123)
400 KOG1848 Uncharacterized conser 28.6 9.5E+02 0.021 27.6 19.6 220 23-250 850-1132(1610)
401 TIGR03092 SASP_sspI small, aci 28.4 72 0.0016 21.7 2.7 28 75-102 37-64 (65)
402 PF14663 RasGEF_N_2: Rapamycin 28.4 95 0.0021 24.0 3.9 32 179-210 7-38 (115)
403 KOG1222 Kinesin associated pro 27.2 5.6E+02 0.012 25.5 9.3 96 146-249 278-373 (791)
404 KOG4199 Uncharacterized conser 26.7 5.6E+02 0.012 24.3 17.0 176 106-289 255-442 (461)
405 PF06371 Drf_GBD: Diaphanous G 26.5 3.1E+02 0.0067 22.9 7.2 57 233-290 128-186 (187)
406 PF08568 Kinetochor_Ybp2: Unch 25.7 7.8E+02 0.017 25.7 12.2 73 11-86 436-513 (633)
407 PF11935 DUF3453: Domain of un 25.6 4.8E+02 0.01 23.2 16.2 125 102-230 2-162 (239)
408 KOG2374 Uncharacterized conser 24.9 4.6E+02 0.0099 26.1 8.3 67 133-211 9-75 (661)
409 COG1698 Uncharacterized protei 24.8 2.8E+02 0.0062 20.3 8.2 67 89-155 13-84 (93)
410 PF08161 NUC173: NUC173 domain 24.8 3.9E+02 0.0084 23.0 7.4 58 195-252 15-72 (198)
411 PF06371 Drf_GBD: Diaphanous G 24.7 2.7E+02 0.0059 23.2 6.5 57 145-208 130-186 (187)
412 PF10304 DUF2411: Domain of un 24.2 1.4E+02 0.003 17.6 3.1 29 15-44 4-34 (36)
413 PF14676 FANCI_S2: FANCI solen 24.1 4.1E+02 0.009 21.9 12.4 121 112-246 37-157 (158)
414 COG4912 Predicted DNA alkylati 23.7 5E+02 0.011 22.8 9.2 75 126-213 113-187 (222)
415 PF01417 ENTH: ENTH domain; I 23.5 2.1E+02 0.0045 22.3 5.1 52 114-165 21-76 (125)
416 KOG4541 Nuclear transport rece 22.2 8.4E+02 0.018 24.8 13.3 68 180-253 649-718 (748)
417 PRK02955 small acid-soluble sp 21.7 1.1E+02 0.0023 21.1 2.5 28 75-102 40-67 (68)
418 PF12726 SEN1_N: SEN1 N termin 21.4 8.3E+02 0.018 26.0 10.5 54 239-292 499-554 (727)
419 cd07064 AlkD_like_1 A new stru 21.3 5.4E+02 0.012 22.2 16.5 164 63-260 24-189 (208)
420 KOG4646 Uncharacterized conser 21.2 4.5E+02 0.0098 21.3 12.9 102 14-121 15-127 (173)
421 PF12612 TFCD_C: Tubulin foldi 20.4 5.4E+02 0.012 21.9 11.9 135 145-292 21-159 (193)
422 PF11864 DUF3384: Domain of un 20.2 8.6E+02 0.019 24.1 25.8 211 63-292 2-245 (464)
423 COG5657 CSE1 CAS/CSE protein i 20.1 5.6E+02 0.012 27.7 8.4 109 178-290 531-646 (947)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-64 Score=473.20 Aligned_cols=427 Identities=53% Similarity=0.912 Sum_probs=398.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013663 3 TSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (438)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~ 82 (438)
+.|+|.|+++.++|+.++|...+|||++ +|+.+...++++...|+|..+|.++|...++.+..+|.+|+.+|||.++-+
T Consensus 1 ~~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~ 79 (885)
T KOG2023|consen 1 MAMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH 79 (885)
T ss_pred CCCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccc
Confidence 3589999999999999999999999999 999999999999999999999999999878999999999999999999999
Q ss_pred hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
|..++++...++|+.+++.++++++-||...+.+|..|+...+...||+++|.|.+.+.+++.+..++|+.+|+.+|++.
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHH
Q 013663 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~ 242 (438)
...+++++. .+-++.++|.|++.+.++++++|..|+.|++.++-..++.+..++..++..++.+.+|++++||++.|
T Consensus 160 a~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC 236 (885)
T KOG2023|consen 160 AQFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVC 236 (885)
T ss_pred HHHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 998876533 45689999999999999999999999999999998888889899999999999999999999999999
Q ss_pred HHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhh
Q 013663 243 AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (438)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 322 (438)
.+|.-+.+.+|+.+.||++.+++++++..++.+++|...|+|||.++++.+..+..+.||+++++|+|+..|.+.++|+-
T Consensus 237 ~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 237 RALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred HHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 99999999999999999999999999999999999999999999999999877788999999999999999999998887
Q ss_pred hcc-ccccCCCCCCCCCCCCccccCCCCCCCC-------C--CCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHH
Q 013663 323 LVE-AEEDESLPDRDQDLKPRFHSSRLHGSEN-------P--EDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMP 392 (438)
Q Consensus 323 ~~~-~~~~~~~~d~~~~i~~~~~~~~~~~~~~-------~--~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 392 (438)
+.+ .++|++++|++++|||+|+.++..|..+ + ++||||....|++|++.+.+|+.++..+|++++|.++|
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~P 396 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLP 396 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHH
Confidence 665 6788999999999999999987655411 1 12334456689999999999999999999999999999
Q ss_pred HHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 393 ~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
++...+.+.+ |++|||+++++|+|||||.+.+.||||.++.
T Consensus 397 lLk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip 437 (885)
T KOG2023|consen 397 LLKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIP 437 (885)
T ss_pred HHHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHH
Confidence 9999999988 9999999999999999999999999998875
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-49 Score=389.74 Aligned_cols=380 Identities=27% Similarity=0.374 Sum_probs=331.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
.+++.|++.++++|||. +|++||+.|+.....+.....|.+++.. +.++++|++|++++|+.+.++|+.++.+.++.
T Consensus 3 ~~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred hhHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 36799999999999999 9999999999766544477788888875 99999999999999999999999999999999
Q ss_pred HHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 94 IKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 94 i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
||+.+|..+. ++.+.||+++|.++|.|++.+.+..||+++++|+++..++++..|+.|+.+|..+.+.++....
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~----- 154 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ----- 154 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-----
Confidence 9999999985 6799999999999999999987779999999999999999999999999999999988887543
Q ss_pred CCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc--h----hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--S----ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~----~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
.++..+.+.|.++++|++..||.+|+++++.++.+.+ . .+...+|.++..+....++++.+....++++|.
T Consensus 155 ---~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 155 ---PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred ---hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 5789999999999999988899999999999999885 2 244455666666666777778888899999999
Q ss_pred HHHhhCcccccccHHHHHHHHhhhhcC--CChHHHhHHHHHHHHhhcc-CCChhhHHhhHHHHHHHHHhccCcChhhhhh
Q 013663 247 LLIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (438)
Q Consensus 247 ~l~~~~~~~~~~~~~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (438)
++++..|+.++|++..++++++.+.++ -++.+|..|++++.++++. +.+.+...++.+.+++.++.++...++| +.
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D-~e 310 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD-DE 310 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc-hh
Confidence 999999999999999999999999765 4889999999999999998 4556677789999999999999876665 33
Q ss_pred ccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCC
Q 013663 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASG 402 (438)
Q Consensus 324 ~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 402 (438)
|.++ |++++|| +.++...|.+++++++.++|+ .++|.+++++..++++++
T Consensus 311 w~~~------------------------d~~ded~-----~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~ 361 (1075)
T KOG2171|consen 311 WSNE------------------------DDLDEDD-----EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE 361 (1075)
T ss_pred hccc------------------------ccccccc-----ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC
Confidence 3211 1111111 235567899999999999976 788999999999999999
Q ss_pred CCcchhhHHHHHHHHHHhhcchhhhhhcccccccc
Q 013663 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIFV 437 (438)
Q Consensus 403 ~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 437 (438)
|+.|+||+++|++++|||++.|.++||+|+.+
T Consensus 362 ---w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 362 ---WKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-45 Score=349.45 Aligned_cols=367 Identities=28% Similarity=0.466 Sum_probs=315.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-----------hh
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR-----------TA 82 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~-----------~~ 82 (438)
++.++|..++|||.. +|+.|+.+|++++. .|.|...|..+|.+ .+.+...|..|++.|||.+. .+
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 467788889999999 99999999999985 68999999999995 58899999999999999982 37
Q ss_pred hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhccCCh-hhHhHHHHHHHHHHh
Q 013663 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~~~-~~r~~al~~l~~l~~ 160 (438)
|-.++.|.|++||++++..|+.+.+..+..+++++|.||..+ |.+.||++++.+.....+..+ .++++++.+++++|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998 668999999999998877544 599999999999999
Q ss_pred ccccccccCCCCCCcchhhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHcccchhhHHh--HHHHHHHHHHhhCCCCHH
Q 013663 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~--~~~ll~~l~~~~~~~~~~ 236 (438)
++.++. +....+.++..+.+++.. ++..||.+|+++|.+.+.+....|..- -+-+++++++..+.+|.+
T Consensus 160 ~i~pev-------l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEV-------LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHH-------HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 998752 234678899999999976 578899999999999988875444322 235889999999999999
Q ss_pred HHHHHHHHHHHHHhhCcccccccHHH-HHHHHhhhhcCCChHHHhHHHHHHHHhhccCCC-----------------hhh
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-----------------HEN 298 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~~-li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~-----------------~~~ 298 (438)
++..|+.||++++..||+++.+|+.+ ++..++..+++.+++|..+++|||+++|+.+.. ...
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 999999999999999999999999999887422 112
Q ss_pred HHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 013663 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (438)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l 378 (438)
.+..++.++|.|+..|...+ +++||| +|++.++|+.||..+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqd-----------------------------------e~~d~D----dWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQD-----------------------------------EDDDDD----DWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCC-----------------------------------CCcccc----cCcHHHHHHHHHHHH
Confidence 34456689999998876421 121222 499999999999999
Q ss_pred HhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhcccc
Q 013663 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSE 433 (438)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~~ 433 (438)
++.+|+.++|+++||+.+.+++++ |+.|+||.++||++.+|.. +.+.+..++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 999999999999999999999999 9999999999999999964 445544433
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-37 Score=285.68 Aligned_cols=367 Identities=19% Similarity=0.324 Sum_probs=296.5
Q ss_pred HHHHHHh-hcCCCCHHHHHHHHHHHHHhhc--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-----------hh
Q 013663 17 ICRLLEQ-QISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR-----------TA 82 (438)
Q Consensus 17 l~~~l~~-~~s~d~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~-----------~~ 82 (438)
+.++... .+|||+. +|..||.+|.+++. ...|...+.+++.+ ....+..|..|+++|||.+. ..
T Consensus 6 f~~l~~n~vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d-~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 6 FRCLGKNHVLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCD-LNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred HHHHHhcccCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 4444444 5899999 99999999999986 34577788899985 58899999999999999982 47
Q ss_pred hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHh
Q 013663 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICE 160 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~ 160 (438)
|..+++|.|+++|...++.|.++.+.....+++++|.|+..+ +.+.||+++..+.....+. ....+..++.++++.|+
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998 6689999999999988764 44678889999999999
Q ss_pred ccccccccCCCCCCcchhhhHHHHHH-HhccC-CCHHHHHHHHHHHHHHHcccchhh--HHhHHHHHHHHHHhhCCCCHH
Q 013663 161 DIPQVLDSDVPGLAECPINIFLPRLL-QFFQS-PHTSLRKLSLGSVNQFIMLMPSAL--FVSMDQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~-~~~~vr~~al~~l~~~~~~~~~~~--~~~~~~ll~~l~~~~~~~~~~ 236 (438)
...++.-. ...+.++-.+. ..+.+ ++..||.+|++||..-+.++.+.| ....+-++++++...+.++.+
T Consensus 164 s~~Pe~li-------~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e 236 (858)
T COG5215 164 SEAPEDLI-------QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred ccCHHHHH-------HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHH
Confidence 88763100 12344444444 44433 578899999999998555554433 233456889999999999999
Q ss_pred HHHHHHHHHHHHHhhCcccccccHHH-HHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhH---------------H
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL---------------K 300 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~~-li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~---------------~ 300 (438)
+...++-||++++..+|+++.+|++. +..++.+.+++.+++|..+|+|||+++|+.+...++. +
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~ 316 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFAR 316 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHH
Confidence 99999999999999999999999984 5677888899999999999999999999875433222 2
Q ss_pred hhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 013663 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (438)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~ 380 (438)
..+..++|.|++.+.... ++.++| +|++..+|..||..+++
T Consensus 317 aav~dvlP~lL~LL~~q~-----------------------------------ed~~~D----dWn~smaA~sCLqlfaq 357 (858)
T COG5215 317 AAVADVLPELLSLLEKQG-----------------------------------EDYYGD----DWNPSMAASSCLQLFAQ 357 (858)
T ss_pred HHHHHHHHHHHHHHHhcC-----------------------------------CCcccc----ccchhhhHHHHHHHHHH
Confidence 335568888888776321 111222 49999999999999999
Q ss_pred hhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchh-hhhhccccc
Q 013663 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEV 434 (438)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~-~~~~~l~~i 434 (438)
..|+.++.+++.|+.+.+++++ |..|+||.++||++.+|..+ .+.+++|+.
T Consensus 358 ~~gd~i~~pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qa 409 (858)
T COG5215 358 LKGDKIMRPVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQA 409 (858)
T ss_pred HhhhHhHHHHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhh
Confidence 9999999999999999999999 99999999999999998653 344554443
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-30 Score=252.02 Aligned_cols=385 Identities=21% Similarity=0.307 Sum_probs=299.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc--------
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~-------- 85 (438)
.+.+.+++.++..+|++ .|++||++|+++.++|+|+..+++++.++ +.+..+|+.|++.|||.|.++|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 36788999999999988 99999999999999999999999999965 889999999999999999999975
Q ss_pred -CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 86 -l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
+.++.|..||++++..+...+..+|.+...++-.|.+.++|..||++++.+...+++++..+..+||.|+..+++....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5789999999999999998899999999999999999999999999999999999999999999999999999998874
Q ss_pred ccccCCCCCCcchhhhHHHHHHHh----ccCC---CHHHHHHHHHHHHHHHcc-cchh------hHHhHHHHHHHHHHhh
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQF----FQSP---HTSLRKLSLGSVNQFIML-MPSA------LFVSMDQYLQGLFLLS 230 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~----l~~~---~~~vr~~al~~l~~~~~~-~~~~------~~~~~~~ll~~l~~~~ 230 (438)
.... -++.++..+..++|.+++. +.++ +.++.+..+|++.+++.+ +|.. |..++.-++..+.+-.
T Consensus 161 k~~e-eR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDE-ERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred cccc-ccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 3221 1233334456666665554 4444 455677889988887764 4533 3333333333222211
Q ss_pred ------CCCC-------HHHHHHHHHHHHHHHhhCcccc--------------cccHHHHHHHHhhhhc---C---CChH
Q 013663 231 ------NDPS-------AEVRKLVCAAFNLLIEVRPSFL--------------EPHLRNLFEYMLQVNK---D---TDDD 277 (438)
Q Consensus 231 ------~~~~-------~~~~~~a~~~l~~l~~~~~~~~--------------~~~~~~li~~~~~~~~---~---~~~~ 277 (438)
-|++ ++.++.|+..+.++.+++++-. +.+.+.+++.+++.+. . -.++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 0211 3688999999999998876421 1233344444444432 1 3677
Q ss_pred HHhHHHHHHHHhhccCCChhhHHhhHHHHHH-HHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 013663 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVP-VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (438)
Q Consensus 278 v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~ 356 (438)
|-..++.|+........+++.++|++..++. +++..|+..++|.+.|++ ||.+|+|-.|. ..
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~-------DP~EYiR~~~D---------i~- 382 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE-------DPYEYIRKKFD---------IF- 382 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc-------CHHHHHHhcCc---------hh-
Confidence 8888888888776666678899999999887 778999999999999974 78888872221 11
Q ss_pred CccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhcc-----CCCCcchhhHHHHHHHHHHhhcc
Q 013663 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 357 ~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
.+.++++.+|..++-.++..-|+..+|..++++.+.+.+ ++..+.+.+++|+.++|++++-.
T Consensus 383 -----ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L 449 (1010)
T KOG1991|consen 383 -----EDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASIL 449 (1010)
T ss_pred -----cccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHH
Confidence 225788999999999999999999999999999888863 22345899999999999999743
No 6
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-29 Score=240.10 Aligned_cols=382 Identities=19% Similarity=0.285 Sum_probs=296.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc-------c
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK-------S 85 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~-------~ 85 (438)
+++++.+.|.+.++||++ +||.||+.|+++..+++|...+++++.+ ...++++|..|++.+||.++++|. +
T Consensus 3 ~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~-~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVAN-GQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred cHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhc-cCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 578899999999999999 9999999999999999998889999985 467999999999999999999995 4
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+.++.++.||..++.+|-+....+...++.+|+.|++.++|+.||+++|.++..++++|-++..+.+.+.+++.+....+
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e 160 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE 160 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCCC---cchhhhHHHHHHHhcc---------CCCH-------HHHHHHHHHHHHH-HcccchhhHHhHHHHHHH
Q 013663 166 LDSDVPGLA---ECPINIFLPRLLQFFQ---------SPHT-------SLRKLSLGSVNQF-IMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 166 ~~~~~~~~~---~~~~~~il~~l~~~l~---------~~~~-------~vr~~al~~l~~~-~~~~~~~~~~~~~~ll~~ 225 (438)
++++ .++ ...+..+...+...+. ..+. .+....++.+.++ .+.+|+.|.+++...|+.
T Consensus 161 frSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 161 FRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 7653 111 0111111112222221 1111 1223344455554 345788888999988888
Q ss_pred HHHhhC-------CCC------HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC-----CChHHHhHHHHHHH
Q 013663 226 LFLLSN-------DPS------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWH 287 (438)
Q Consensus 226 l~~~~~-------~~~------~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~-----~~~~v~~~a~~~~~ 287 (438)
.++.+. +++ .++|..+|+.+.-++.+|++.|.+++++++..++..+.+ +.+..+..|+.|+.
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt 318 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLT 318 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 888654 111 378889999999999999999999999999888776532 35678889999999
Q ss_pred HhhccCCChhhH--HhhHHHHHH-HHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 013663 288 SYFEAQLPHENL--KEFLPRLVP-VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (438)
Q Consensus 288 ~~~~~~~~~~~~--~~~l~~l~~-~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~ 364 (438)
++++.+...+.+ ...+..+-. +++.++...++|++.+|+ +|.+|+| ++.+|+ +.
T Consensus 319 ~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED-------~pleYiR-----RDlEGs-----------Dv 375 (960)
T KOG1992|consen 319 SVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFED-------NPLEYIR-----RDLEGS-----------DV 375 (960)
T ss_pred HHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhcc-------CHHHHHH-----HhcccC-----------Cc
Confidence 999874332222 334444444 456777777777777652 4777776 333332 24
Q ss_pred hhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhc---cCCCCcchhhHHHHHHHHHHhh
Q 013663 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS---ASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~w~~r~aal~~l~~l~~ 421 (438)
.+.|++|.+++..++..+..+..+.+-..++..++ .+.+.||+.++.+++.+.+++-
T Consensus 376 dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 376 DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 68899999999999999977888888888877775 2334669999999999999884
No 7
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.91 E-value=5.6e-22 Score=193.44 Aligned_cols=376 Identities=21% Similarity=0.295 Sum_probs=272.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc---------
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~--------- 85 (438)
+.|..+|.+.+|+|+. +|.+||.+|+++...++|-..|..+..+ ...+-..||.|.+.||+.+.++|..
T Consensus 4 ~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~-~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAAN-KDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhC-cccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 5689999999999999 9999999999999999998899999985 4688999999999999999999975
Q ss_pred -CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 86 -l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
.+.+.|..||..+++.+.+++.++|..++++++.|+..++|+.||+++|.+..++.+++.+...+|+.+|..+..++..
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999999988853
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHH--HHHHHHHHcccch---h--------hHHhHHHHHHHHHHhhC
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS--LGSVNQFIMLMPS---A--------LFVSMDQYLQGLFLLSN 231 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~a--l~~l~~~~~~~~~---~--------~~~~~~~ll~~l~~~~~ 231 (438)
+-.. ......+..+ -.++......+...|..| .+.+.+++..+.. . +.+.++.+++.+-..++
T Consensus 162 ee~~---~~~~~~l~~m-~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 162 EEMF---FVGPVSLAEM-YRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ 237 (1005)
T ss_pred HHHh---cccccchhhh-hhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 2111 0000111211 122233333343444333 3556665554421 1 11222333333322222
Q ss_pred --C-CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhc----------------------CCC------hHHHh
Q 013663 232 --D-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK----------------------DTD------DDVAL 280 (438)
Q Consensus 232 --~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~----------------------~~~------~~v~~ 280 (438)
+ .+...|...++++..+.++.|+.+.+++...++.+++... +.+ ++...
T Consensus 238 ~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i 317 (1005)
T KOG2274|consen 238 RNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVI 317 (1005)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhh
Confidence 2 2357899999999999999999999988877777654321 111 23456
Q ss_pred HHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccc
Q 013663 281 EACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (438)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~ 360 (438)
+.++|++++++.....+.++..++.+++.++.+++.+++.+..|.. |+.+|+ +++|+
T Consensus 318 ~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~s-------D~~~fV---------------~dEd~- 374 (1005)
T KOG2274|consen 318 QIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTS-------DVNQFV---------------ADEDD- 374 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhc-------cHHHhh---------------ccCCC-
Confidence 7788888888763334455667777888888888888888888852 344444 11221
Q ss_pred cccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhc-------cCCCCcchhhHHHHHHHHHHhhc
Q 013663 361 IVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-------ASGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-------~~~~~~w~~r~aal~~l~~l~~~ 422 (438)
.++.|..+.+.+-.+...+|...+..+.......++ ..+..+|+..++.+.+-.+...+
T Consensus 375 ---~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~ 440 (1005)
T KOG2274|consen 375 ---GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID 440 (1005)
T ss_pred ---CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC
Confidence 267888899999999999999766666655433332 23356799999999988887755
No 8
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.9e-21 Score=185.08 Aligned_cols=383 Identities=16% Similarity=0.207 Sum_probs=254.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc-----CCHhhH
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~-----l~~~~~ 91 (438)
+.|+|++..|||.. ++|.||++|++++++|||...|..+..+ .+.+.++|.+|.+.+||.|.++|.+ +++|+|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l~-~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFLS-KTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHhc-cccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 46789999999999 9999999999999999999999999875 5888999999999999999999975 899999
Q ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC----ChhhHhHHHHHHHHHHhccccc-c
Q 013663 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQV-L 166 (438)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~----~~~~r~~al~~l~~l~~~~~~~-~ 166 (438)
..||..++..+.++.+.+..+.|.++++||+.++|..||+++|.|.+.+++. |....+..+.++.++.+.+.+. +
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999875 7788889999999999988763 1
Q ss_pred ccCCCCCCcchhhhHHHHHHHhccCC------------C-------HHHHHHHHHHHHHHHccc---ch--hhHHhHHHH
Q 013663 167 DSDVPGLAECPINIFLPRLLQFFQSP------------H-------TSLRKLSLGSVNQFIMLM---PS--ALFVSMDQY 222 (438)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~------------~-------~~vr~~al~~l~~~~~~~---~~--~~~~~~~~l 222 (438)
..+ +..|....+.+++.+...+-++ + -++-..+++++..++.+- |. .+.+.+..+
T Consensus 160 ~a~-rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F 238 (978)
T KOG1993|consen 160 LAD-RKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQF 238 (978)
T ss_pred hhh-hHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Confidence 100 0111112233333222222111 1 112234566666554331 21 122223333
Q ss_pred HHH----HHHhhCCCCH----H----HHHHHHHHHHHHHhhCcccccc--cHHHHHHHHhhhhcC-------------CC
Q 013663 223 LQG----LFLLSNDPSA----E----VRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKD-------------TD 275 (438)
Q Consensus 223 l~~----l~~~~~~~~~----~----~~~~a~~~l~~l~~~~~~~~~~--~~~~li~~~~~~~~~-------------~~ 275 (438)
+.. +......... + .-....+.+..+.+.+|-.|.. ..+..+++.+..+.+ ..
T Consensus 239 ~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~f 318 (978)
T KOG1993|consen 239 LELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSF 318 (978)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccH
Confidence 222 1111221111 1 1122344555666677766665 445555555443322 23
Q ss_pred hHHHhHHHHHHHHhhcc---C------CCh-------h--------h-HHhhHHHHHHHHHh-ccCcChhhhhhcccccc
Q 013663 276 DDVALEACEFWHSYFEA---Q------LPH-------E--------N-LKEFLPRLVPVLLS-NMIYADDDESLVEAEED 329 (438)
Q Consensus 276 ~~v~~~a~~~~~~~~~~---~------~~~-------~--------~-~~~~l~~l~~~l~~-~l~~~~~d~~~~~~~~~ 329 (438)
++...+|+..+..+... . ..+ + . -.+.+..+...+++ ++.-+++|.+.|..
T Consensus 319 e~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~--- 395 (978)
T KOG1993|consen 319 EEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQ--- 395 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhc---
Confidence 45556666655543222 0 000 0 0 13445556665654 56667888888853
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCC------C
Q 013663 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG------D 403 (438)
Q Consensus 330 ~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~------~ 403 (438)
||+.++. |+... +..+++|.+|..+...+....++-..|.++..+.+..+... .
T Consensus 396 ----dPE~~~~--------------Eq~~~--dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l 455 (978)
T KOG1993|consen 396 ----DPEGWVL--------------EQSGG--DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDL 455 (978)
T ss_pred ----ChHHhhh--------------hcccc--cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchH
Confidence 4554431 11111 24578999999999999999999999999999976654431 1
Q ss_pred CcchhhHHHHHHHHHHhhcchh
Q 013663 404 EAWKDREAAVLALGAIAEGCIK 425 (438)
Q Consensus 404 ~~w~~r~aal~~l~~l~~~~~~ 425 (438)
..-..+.|.+.++|..+-...+
T Consensus 456 ~a~L~KDAiYaa~g~~a~~l~~ 477 (978)
T KOG1993|consen 456 TALLLKDAIYAAFGLAAYELSN 477 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2244689999999988876553
No 9
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-20 Score=179.68 Aligned_cols=381 Identities=15% Similarity=0.171 Sum_probs=261.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc---------
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~--------- 85 (438)
+.+.|++.++++.|.. +|+.||..|.+++++|+|+..+.++++++ ..++++|+.|++.+||+|.+.|+.
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 5688999999999999 99999999999999999999999999975 789999999999999999999987
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
..++.|+++.++++..+..++...|...-.++..|...+++ +.|+ ++|...+.+++++..+...|+.|+.++++....
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 23566777777777777777777787777777778777765 8898 999999999999999999999999999998776
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhcc---C-C---CHHHHHHHHHHHHHHHc-ccchh------hHHhHHHHHHHHHHh-
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQ---S-P---HTSLRKLSLGSVNQFIM-LMPSA------LFVSMDQYLQGLFLL- 229 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~---~-~---~~~vr~~al~~l~~~~~-~~~~~------~~~~~~~ll~~l~~~- 229 (438)
....+ +......+...+|.+.+.-. + + +.++-...++++...+- .+|.. +..+++-.+..+.+-
T Consensus 160 k~nde-q~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDE-QVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccch-HhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 54311 11122334445555544322 2 2 34555566776665433 34533 333333333322221
Q ss_pred ----hC-CC-----C--HHHHHHHHHHHHHHHhhCccccc--------ccHHHHHHHHhhh----hc---CCC---hHHH
Q 013663 230 ----SN-DP-----S--AEVRKLVCAAFNLLIEVRPSFLE--------PHLRNLFEYMLQV----NK---DTD---DDVA 279 (438)
Q Consensus 230 ----~~-~~-----~--~~~~~~a~~~l~~l~~~~~~~~~--------~~~~~li~~~~~~----~~---~~~---~~v~ 279 (438)
+. |+ + -+.++.|+--+.++..++.+... ...-.++|.+++. +. ... -+..
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~ 318 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIE 318 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHH
Confidence 11 11 1 14566777777777776654221 1111244444332 21 111 1223
Q ss_pred hHHHHHHHHhhcc-CCChhhHHhhHHHHHH-HHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 013663 280 LEACEFWHSYFEA-QLPHENLKEFLPRLVP-VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (438)
Q Consensus 280 ~~a~~~~~~~~~~-~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~ 357 (438)
...+.+....|-. ...++.+.|+++-++. .++..++.++++++.|+. ||++|+|-.+. ..+
T Consensus 319 LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEn-------Dp~eyirry~d---------f~d- 381 (970)
T COG5656 319 LYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFEN-------DPDEYIRRYYD---------FFD- 381 (970)
T ss_pred HHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhc-------CHHHHHHHhcc---------hhc-
Confidence 3344333333332 3467888999998887 778889989888888863 67778762211 111
Q ss_pred ccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhcc----C-CCCcchhhHHHHHHHHHHhh
Q 013663 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA----S-GDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~----~-~~~~w~~r~aal~~l~~l~~ 421 (438)
..+++-.+|..++-.++..-|+..+...++++...+.. + +-.|.+..++|+..++++..
T Consensus 382 -----~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 382 -----NGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred -----CCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 13566678889998888888999999999999988833 1 12468899999999999887
No 10
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.86 E-value=4.8e-19 Score=173.74 Aligned_cols=372 Identities=20% Similarity=0.274 Sum_probs=253.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc-----CCHhhHHH
Q 013663 19 RLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQQY 93 (438)
Q Consensus 19 ~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~-----l~~~~~~~ 93 (438)
..+...+|+++. .+|.||..|+++.++++|...|..+..+ ...+-.+|..|++.+||.|.++|.. +.++....
T Consensus 8 ~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~ 85 (947)
T COG5657 8 KQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVL 85 (947)
T ss_pred HHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchH
Confidence 345667899999 9999999999999999999889998875 3789999999999999999999975 55666669
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
||..++.++.+.+....-+.|.+++.||..++|..||+++|.|...+++.|.....+.+.+++.+.+.....++++ .+
T Consensus 86 IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd--~l 163 (947)
T COG5657 86 IRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD--AL 163 (947)
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH--HH
Confidence 9999999998877777779999999999999999999999999999999888888999999999999998766553 22
Q ss_pred CcchhhhHHHHHHHhccC--CCHHH----H-------HHHHHHHHHHHc----ccchhhHHhHHHHHHHHHHhhCCCCH-
Q 013663 174 AECPINIFLPRLLQFFQS--PHTSL----R-------KLSLGSVNQFIM----LMPSALFVSMDQYLQGLFLLSNDPSA- 235 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~~--~~~~v----r-------~~al~~l~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~- 235 (438)
|..-.+.+.+.+.+.+.. +.... . ..+++.+..+.. ..++.+.++++..+...+..+....+
T Consensus 164 f~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~~ 243 (947)
T COG5657 164 FLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNPV 243 (947)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcchh
Confidence 211122222222222211 01111 1 113333333322 23445555666666555555442222
Q ss_pred ------------HHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC-----CChHHHhHHHHHHHHhhccC--CCh
Q 013663 236 ------------EVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQ--LPH 296 (438)
Q Consensus 236 ------------~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~-----~~~~v~~~a~~~~~~~~~~~--~~~ 296 (438)
.++...++.+.-+...+|+.+++++-.+++.++..+.+ ..+-+...++.++......+ ...
T Consensus 244 lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~~ 323 (947)
T COG5657 244 LQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKTA 323 (947)
T ss_pred hhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHHH
Confidence 33445778888888889999998888888888776532 23455666666666555421 111
Q ss_pred hhH----HhhHHHHHHHH-HhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhH
Q 013663 297 ENL----KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (438)
Q Consensus 297 ~~~----~~~l~~l~~~l-~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a 371 (438)
+.+ ...+.+++..+ +.++.-.++|++.|++ ||.+|+| ++.. . +...++|.++
T Consensus 324 e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~d-------dp~eyir--------e~s~----~----dye~~vr~~~ 380 (947)
T COG5657 324 EVLSNVSENLINNLVDLLILPNLILREEDLEEWED-------DPLEYIR--------EQSK----T----DYEVNVRPCI 380 (947)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCccccccccc-------CHHHHHH--------hhcc----c----cchhhhhHHH
Confidence 112 23555566544 4566666777777752 5666664 1100 1 1346789999
Q ss_pred HHHHHHHHhhhchhhHHhHHHHHHHHhccCCC-CcchhhHHHHHHHH
Q 013663 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGD-EAWKDREAAVLALG 417 (438)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~-~~w~~r~aal~~l~ 417 (438)
...+......+|+-+.+++...+.+-.+.|+. ...+...|++..+|
T Consensus 381 ~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g 427 (947)
T COG5657 381 ENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFG 427 (947)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhh
Confidence 99999999999977777777777776655520 11445556655555
No 11
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.9e-16 Score=150.99 Aligned_cols=373 Identities=17% Similarity=0.242 Sum_probs=251.2
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 15 ~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
+.++|++.+...| |++ .|++|.+.+++++.+|..|..+..++.. +..++.+|+++..+|...++..+...+.....
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~~-~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLIN-ETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 5688888888877 777 9999999999999999999999999985 45999999999999999998877789999999
Q ss_pred HHHHHhhhhhh-----cC----cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccc
Q 013663 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 93 ~i~~~ll~~l~-----~~----~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (438)
.||..+.+.+. ++ ++.++++++++++.+.-.+++..|+.++-.+...++-+.. ..++.....++-.+.
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~---~~~~dfflkvllaId 157 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSA---ISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccc---hhhHHHHHHHHHHhh
Confidence 99999888753 33 7899999999999999999999999999998887764321 123444444444444
Q ss_pred ccccc-CCC---------CC----C-cchhhhHHHHHHHhcc---CC-CHHHHHHHHHHHHHHHcccchhhHHhHHHHHH
Q 013663 164 QVLDS-DVP---------GL----A-ECPINIFLPRLLQFFQ---SP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (438)
Q Consensus 164 ~~~~~-~~~---------~~----~-~~~~~~il~~l~~~l~---~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~ 224 (438)
+++.. ++. .+ + +..++.+.....+.+. +. ++.+-..++.|+++++.|+.-.+..+ +..++
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaN-d~f~n 236 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIAN-DYFLN 236 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhc-hhHHH
Confidence 43221 110 00 0 1234455555555443 34 78899999999999999985332211 12344
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc-----------------------------------------------
Q 013663 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----------------------------------------------- 257 (438)
Q Consensus 225 ~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~----------------------------------------------- 257 (438)
.+++.+. -+++|.+||.|+..++...-+=+.
T Consensus 237 LLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~ 314 (980)
T KOG2021|consen 237 LLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIII 314 (980)
T ss_pred HHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhH
Confidence 4444443 355677777776666653211000
Q ss_pred ----------------ccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc----CCChhhHHhhHHHHHHHHHhccCcC
Q 013663 258 ----------------PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYA 317 (438)
Q Consensus 258 ----------------~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~----~~~~~~~~~~l~~l~~~l~~~l~~~ 317 (438)
..+-.++|++++.+.+.++++....+-||+.+... +.....-...+.+++..+++.+++.
T Consensus 315 s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicyd 394 (980)
T KOG2021|consen 315 SQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYD 394 (980)
T ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhcc
Confidence 01112444445555555555555555555554332 1111223456677777777777764
Q ss_pred hhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHH
Q 013663 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397 (438)
Q Consensus 318 ~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 397 (438)
+.. .|+ ++. .++|++...-++|+.-.-.++.++..-|+.++..+-..+.+.
T Consensus 395 emy--~nd--------------------------dn~-tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~a 445 (980)
T KOG2021|consen 395 EMY--FND--------------------------DNV-TGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAA 445 (980)
T ss_pred HHh--hcc--------------------------cCC-CCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 321 111 000 011112234588999999999999999988888888888887
Q ss_pred hccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 398 LSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 398 l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
+.+..+++|+.-|+|+..+-.++|+..
T Consensus 446 l~ns~e~swqevE~Aiylly~lgE~l~ 472 (980)
T KOG2021|consen 446 LMNSKEESWQEVELAIYLLYNLGECLK 472 (980)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhhccc
Confidence 776656779999999999999998765
No 12
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.8e-16 Score=160.05 Aligned_cols=360 Identities=16% Similarity=0.173 Sum_probs=263.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhc--CCcHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHH
Q 013663 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (438)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~-~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i 94 (438)
.++|..+++.....+|++--..+.++.+ -|+-|+.|++.|.+ ..+.+++.|.+|..+|.......-.... .....+
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~-~~~~~l 160 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ-PHLDDL 160 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-hhHHHH
Confidence 3455556665443388888888877664 34545545544432 2489999999999999887655333222 234577
Q ss_pred HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc--cC---chHHHHHHHHHHhc----cCChhhHhHHHHHHHHHHhccccc
Q 013663 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGG--IA---GWLELLQALVTCLD----SNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~--~~---~w~~ll~~l~~~l~----~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+..+.++|.+++..||..++++++.++.... .. .+..++|.++..+. .++...-..++.+|..+.+..|..
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 8888999999866699999999999987652 22 34466777666654 456666778999999999888876
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccchh-----------------------------
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSA----------------------------- 214 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~----------------------------- 214 (438)
++ +++..++...++...+. +..+|..|++++..+.++.|..
T Consensus 241 l~--------~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 241 LR--------PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HH--------HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 54 57888888888888775 6889999999999888764310
Q ss_pred ---------------h--------------HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHH
Q 013663 215 ---------------L--------------FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (438)
Q Consensus 215 ---------------~--------------~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~ 265 (438)
+ ...++.+++.+..+++++++..|.+++.++..+++.+.+.+.+.++++++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~ 392 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILP 392 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 01123567777778889999999999999999999999999999999999
Q ss_pred HHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHH-HHHhccCcChhhhhhccccccCCCCCCCCCCCCccc
Q 013663 266 YMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP-VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFH 344 (438)
Q Consensus 266 ~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~ 344 (438)
.++..++|+++.||..|+..++.+++. ....+..+.+..+| .|+..+-.
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~std--l~p~iqk~~~e~l~~aL~~~ld~---------------------------- 442 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTD--LQPEIQKKHHERLPPALIALLDS---------------------------- 442 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhh--hcHHHHHHHHHhccHHHHHHhcc----------------------------
Confidence 999999999999999999999999886 33344444444444 44433210
Q ss_pred cCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchh----hHHhHHH-HHHHHhccCCCCcchhhHHHHHHHHHH
Q 013663 345 SSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE----ILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAI 419 (438)
Q Consensus 345 ~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~-~l~~~l~~~~~~~w~~r~aal~~l~~l 419 (438)
..+..+...|..++..+.+.+.+. +++.+++ .+..+++++. ...|+.++.+||++
T Consensus 443 -----------------~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~---~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 443 -----------------TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSK---PYVQEQAVTAIASV 502 (1075)
T ss_pred -----------------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHH
Confidence 012344556777788777777663 4455555 4445556666 89999999999999
Q ss_pred hhcchhhhhhccccccc
Q 013663 420 AEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 420 ~~~~~~~~~~~l~~i~~ 436 (438)
|+.+.+.+.+|++.+|+
T Consensus 503 A~AA~~~F~pY~d~~Mp 519 (1075)
T KOG2171|consen 503 ADAAQEKFIPYFDRLMP 519 (1075)
T ss_pred HHHHhhhhHhHHHHHHH
Confidence 99999999999988774
No 13
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.9e-16 Score=150.39 Aligned_cols=378 Identities=17% Similarity=0.170 Sum_probs=243.2
Q ss_pred CCCHHHHHHHHHHHHH-hh----cCC-cHHHHHHH-HHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhh
Q 013663 27 PSSTADKSQIWQQLQQ-YS----QFP-DFNNYLAF-ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELL 99 (438)
Q Consensus 27 ~d~~~~r~~A~~~L~~-~~----~~p-~~~~~l~~-il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll 99 (438)
.+-. +|..|---|++ .+ ..| +...+.-. ++..-...++.+|...++++.+.+.+...+ ....+...|.
T Consensus 60 ~d~~-~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~----~wpelLp~L~ 134 (885)
T KOG2023|consen 60 EDVP-TRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQ----HWPELLPQLC 134 (885)
T ss_pred cchh-HHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccc----cchhHHHHHH
Confidence 3445 78888877764 32 122 22222222 222213567799999998888777552111 1124556677
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHH-------hhc-cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCC
Q 013663 100 PCLGAADRHIRSTVGTIVSVVVQ-------LGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 100 ~~l~~~~~~vr~~~a~~la~i~~-------~~~-~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (438)
++|.+++......+-.++.+|+. .+. .....-++|.+++.++..+|..|..|+.|+..++-.-+..+
T Consensus 135 ~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal----- 209 (885)
T KOG2023|consen 135 ELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL----- 209 (885)
T ss_pred HHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH-----
Confidence 77776655444444455555543 332 34456689999999999999999999999987765443322
Q ss_pred CCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
-.+++.++..++..-+|++++||+..+.++.-+.+..|+.+.+++..+++.++...+|.++.|...||+.+..+++.
T Consensus 210 ---~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 210 ---YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred ---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 24678899999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred --CcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc---CCChhhHHhhHHHHHHHHHhccC-cC--hhh--h
Q 013663 252 --RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPHENLKEFLPRLVPVLLSNMI-YA--DDD--E 321 (438)
Q Consensus 252 --~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~---~~~~~~~~~~l~~l~~~l~~~l~-~~--~~d--~ 321 (438)
+.+.+.||++.++|.++..+..+++++.... .--+- +--.+.++|.+.+=-........ .. +|| .
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~-----~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK-----NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhc-----CccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 4578899999999999987764443332221 00000 00001122211110000000000 00 000 0
Q ss_pred hhccccccCCCCCCCCCCCCccccCCCCCC----------CCCCC------CccccccchhhhhhHHHHHHHHHhhhch-
Q 013663 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGS----------ENPED------DDDDIVNVWNLRKCSAAALDVLSNVFGD- 384 (438)
Q Consensus 322 ~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~----------~~~~~------~d~~~~~~~~~r~~a~~~l~~l~~~~~~- 384 (438)
+... . ..|..+++... ++.-+ .+.-..+.|.+|+++.-+++++++.+-+
T Consensus 362 DdD~-~-------------~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g 427 (885)
T KOG2023|consen 362 DDDA-F-------------SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG 427 (885)
T ss_pred cccc-c-------------ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh
Confidence 0100 0 01111111100 00000 0000122599999999999999999866
Q ss_pred --hhHHhHHHHHHHHhccCC---------------------------------------CCcchhhHHHHHHHHHHhhcc
Q 013663 385 --EILPTLMPVIQAKLSASG---------------------------------------DEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 385 --~~~~~l~~~l~~~l~~~~---------------------------------------~~~w~~r~aal~~l~~l~~~~ 423 (438)
..+|.++|++.+++.+.. +.|-++.|||+.+|+.+-|..
T Consensus 428 ~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 428 FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 556778999999886621 445677999999999999999
Q ss_pred hhhhhhccccccc
Q 013663 424 IKGLYPHLSEVIF 436 (438)
Q Consensus 424 ~~~~~~~l~~i~~ 436 (438)
++++.||+..|++
T Consensus 508 ~~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 508 GEELVPYLEYILD 520 (885)
T ss_pred cchhHHHHHHHHH
Confidence 9999999988764
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.72 E-value=6.9e-15 Score=144.79 Aligned_cols=342 Identities=15% Similarity=0.193 Sum_probs=230.9
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHH
Q 013663 55 FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQ 134 (438)
Q Consensus 55 ~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~ 134 (438)
.++...++.|.+.|+||..-|-+.+++.-..++.+.-..+...+++.|.+.++.|.+.+..++|-++..-+..+...+.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 44444568999999999999999999887778888777788899999999999999999999999998777677778888
Q ss_pred HHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH---------------------------------
Q 013663 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF--------------------------------- 181 (438)
Q Consensus 135 ~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i--------------------------------- 181 (438)
.|...+-++....|..+-..|..+..++++..++... ......+
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la---~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA---ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccc---cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 8888776777777877777788887777763222110 0111222
Q ss_pred ----------HHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHh
Q 013663 182 ----------LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 182 ----------l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~ 250 (438)
+..++..+.++...||+.|+.+++.+....+.... ..++..+..-+.. ..+..-+...+|++.++.
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly---~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY---VELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 22222233334566788888888888777764432 2344444443332 334455567789999999
Q ss_pred hCcccccccHHHHHHHHhhhh---cCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhcccc
Q 013663 251 VRPSFLEPHLRNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (438)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~~---~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 327 (438)
..+..|..|++.++|++.+.+ ...++++|..+++.+..+.+. +++.+.|+.+.++..++.++.+.+.-....++|
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYISYDPNYNYDTEED 320 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHhccCCCCCCCCccc
Confidence 999999999999999999887 567899999999999988875 667889999999999999998654111111111
Q ss_pred cc-CCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhHHhHHHHHHHHhccCCC
Q 013663 328 ED-ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGD 403 (438)
Q Consensus 328 ~~-~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~ 403 (438)
++ ...+|.++|= ++ ++..||++-+|.+|++|..|+..+...-.+ .+...+-|.+..-++..+
T Consensus 321 ed~~~~ed~eDde------------~~-deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkERE- 386 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDE------------QD-DEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKERE- 386 (1233)
T ss_pred hhhhhhhccccch------------hc-cccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHh-
Confidence 11 1111111110 00 111122245899999999999999866554 344555556656665544
Q ss_pred CcchhhHHHHHHHHHHh
Q 013663 404 EAWKDREAAVLALGAIA 420 (438)
Q Consensus 404 ~~w~~r~aal~~l~~l~ 420 (438)
-.+|--.+.++-++.
T Consensus 387 --EnVk~dvf~~yi~ll 401 (1233)
T KOG1824|consen 387 --ENVKADVFHAYIALL 401 (1233)
T ss_pred --hhHHHHHHHHHHHHH
Confidence 234444444444443
No 15
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.5e-15 Score=139.64 Aligned_cols=354 Identities=18% Similarity=0.258 Sum_probs=241.4
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhh---cCcHHHH
Q 013663 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (438)
Q Consensus 34 ~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~---~~~~~vr 110 (438)
.+|..+|++|++++..|..+-.++.. ..+.....+|+..+|+++++.++.+++......|+.++..+. +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 47899999999999999988888875 688999999999999999999999999999999998887765 4445999
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCC-----------CCCcchhh
Q 013663 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP-----------GLAECPIN 179 (438)
Q Consensus 111 ~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-----------~~~~~~~~ 179 (438)
.+++.++|.++-+.+ .|.+-++.+++.+.+..+. ..++..+.+.+|++.++-.. ..++....
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-----~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-----VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVS 152 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-----HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHH
Confidence 999999999998765 8988788887777765543 44555666666665432100 01123445
Q ss_pred hHHHHHHHhccCC---CHHHHHHHHHHHHHHHc--ccchhhHHhHHHHHHHHHHhhC-----------------------
Q 013663 180 IFLPRLLQFFQSP---HTSLRKLSLGSVNQFIM--LMPSALFVSMDQYLQGLFLLSN----------------------- 231 (438)
Q Consensus 180 ~il~~l~~~l~~~---~~~vr~~al~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~----------------------- 231 (438)
.++..+..+++++ +..+-..+++|+++|.. .++.........++..++..++
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~ 232 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS 232 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh
Confidence 5666666666553 36678899999999987 3332111000011111221111
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHhhCcccccc---cHHHHHHHHhhhhcCCChHHHhHHH
Q 013663 232 -------------------------DPSAEVRKLVCAAFNLLIEVRPSFLEP---HLRNLFEYMLQVNKDTDDDVALEAC 283 (438)
Q Consensus 232 -------------------------~~~~~~~~~a~~~l~~l~~~~~~~~~~---~~~~li~~~~~~~~~~~~~v~~~a~ 283 (438)
..+.+-..+.++.|..+.+.+...+.. ..-.++..++-+..+.+.+|....+
T Consensus 233 ~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF 312 (559)
T KOG2081|consen 233 EGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASF 312 (559)
T ss_pred ccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhH
Confidence 123344455555555555443221111 1123455556666777889999999
Q ss_pred HHHHHhhccC------CChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 013663 284 EFWHSYFEAQ------LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (438)
Q Consensus 284 ~~~~~~~~~~------~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~ 357 (438)
.+|..+.+.- .....++||..+++..+.+..+..++..+. .+ +
T Consensus 313 ~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l------------------------------~E-e 361 (559)
T KOG2081|consen 313 NFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDL------------------------------PE-E 361 (559)
T ss_pred HhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccC------------------------------cc-c
Confidence 9999998761 122456899999999999988865421110 01 1
Q ss_pred ccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhhhcccccc
Q 013663 358 DDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
. ......|...++.+..++-..|+ +.+..+.-.+.+ +.++ |..-+|+++.+..++......-...+|+++
T Consensus 362 ~---~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~pevl 432 (559)
T KOG2081|consen 362 E---SEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMPEVL 432 (559)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHHHHH
Confidence 1 12467899999999999999988 788887777766 3445 999999999999999887644444444444
No 16
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6.7e-13 Score=130.49 Aligned_cols=389 Identities=14% Similarity=0.140 Sum_probs=247.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
..++++.++..++++.+......++++|.+.+.+|..|..-.+++.. +....+|+|+|++|.-+|+++|..++++...
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~~~~ 82 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPANEAV 82 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChhHHH
Confidence 56888999999998844327888999999999999999888888875 7778889999999999999999999999999
Q ss_pred HHHHHhhhhhh--c-CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCC-h--hhHhHHHHHHHHHHhcccccc
Q 013663 93 YIKSELLPCLG--A-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-I--NHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 93 ~i~~~ll~~l~--~-~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~-~--~~r~~al~~l~~l~~~~~~~~ 166 (438)
.++..++..+. + .+..|-++.+-.+|.++-+.-++.||+.+..++..++.+. | .--..+ .++..+...+|.++
T Consensus 83 qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~-~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 83 QLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINC-EILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhH-HHHHHHhccCcHhh
Confidence 99988888764 3 3677778888888888877778899999999999887642 2 111112 22222223444432
Q ss_pred ccC-CC----CCC----cchhhhHHH---HHHHhccCCCH-----HHHHHHHHHHHHHHcccch---hhHHhHHH-----
Q 013663 167 DSD-VP----GLA----ECPINIFLP---RLLQFFQSPHT-----SLRKLSLGSVNQFIMLMPS---ALFVSMDQ----- 221 (438)
Q Consensus 167 ~~~-~~----~~~----~~~~~~il~---~l~~~l~~~~~-----~vr~~al~~l~~~~~~~~~---~~~~~~~~----- 221 (438)
+.. .+ +++ .......++ .+++...+... -.+..|++|+..|+.++.- .....+..
T Consensus 162 q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~l 241 (982)
T KOG2022|consen 162 QHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDVL 241 (982)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 210 00 000 111222233 33333332222 3578899999999885421 00000000
Q ss_pred ------------------------------------------------HHHHHHHh----------hCCCC--HHHHHHH
Q 013663 222 ------------------------------------------------YLQGLFLL----------SNDPS--AEVRKLV 241 (438)
Q Consensus 222 ------------------------------------------------ll~~l~~~----------~~~~~--~~~~~~a 241 (438)
+++.+... ..+++ .+.-...
T Consensus 242 ~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~ 321 (982)
T KOG2022|consen 242 GQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTF 321 (982)
T ss_pred hhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 11111100 01111 2222233
Q ss_pred HHHHHHHHhhCccccccc---------HHHHHHHHhhhhcC-----CChHHHhHHHHHHHHhhcc---------CCChhh
Q 013663 242 CAAFNLLIEVRPSFLEPH---------LRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHEN 298 (438)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~---------~~~li~~~~~~~~~-----~~~~v~~~a~~~~~~~~~~---------~~~~~~ 298 (438)
+...+..++++-..+-.+ +..++..++.+..- -++.+...++.||.++.+. +.....
T Consensus 322 ~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i 401 (982)
T KOG2022|consen 322 LAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQI 401 (982)
T ss_pred HHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhH
Confidence 333333333321111111 11222333333221 2567788899999998654 111122
Q ss_pred H-HhhHHHHHHHHHhccCcChhhh-hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHH
Q 013663 299 L-KEFLPRLVPVLLSNMIYADDDE-SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (438)
Q Consensus 299 ~-~~~l~~l~~~l~~~l~~~~~d~-~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~ 376 (438)
+ .+...+++..+++.+..++++. ..| .. + +.+...++|+.-.+++.
T Consensus 402 ~~~qIy~qlvei~l~K~~~Ps~e~~~~W------------------------~S------~--s~e~F~~YR~diSD~~~ 449 (982)
T KOG2022|consen 402 LSQQIYAQLVEILLKKLALPSKEIWLSW------------------------SS------D--SREQFESYRKDISDLLM 449 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHhccC------------------------Cc------c--hHHHHHHHHHHHHHHHH
Confidence 3 4888999999999888765432 122 11 1 11234588999999999
Q ss_pred HHHhhhchhhHHhHHHHHHHHhccC--CCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 377 VLSNVFGDEILPTLMPVIQAKLSAS--GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 377 ~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
.....+|+..+..+...+.+++.+. ++.+|..-|+.++.+.++++..++...+.+|.+++
T Consensus 450 ~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~ 511 (982)
T KOG2022|consen 450 SSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFE 511 (982)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence 9999999999999999999998775 36779999999999999999988777776666554
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.60 E-value=1.7e-12 Score=128.24 Aligned_cols=332 Identities=16% Similarity=0.208 Sum_probs=246.3
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~ 126 (438)
+.....+.+-+.+ .+.+..+|.+|...|... .++ .+..-...++..+++.+++++..|+.+++++++.++.+
T Consensus 816 ~s~a~kl~~~~~s-~~s~~~ikvfa~LslGEl-gr~---~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg--- 887 (1233)
T KOG1824|consen 816 KSLATKLIQDLQS-PKSSDSIKVFALLSLGEL-GRR---KDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG--- 887 (1233)
T ss_pred hhHHHHHHHHHhC-CCCchhHHHHHHhhhhhh-ccC---CCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC---
Confidence 3344444444443 478899999999998764 332 33444567888999999999999999999999999864
Q ss_pred CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
+.++++|++.+.+.++ +.-+..-+..|..++.....- .+..+++.|+..+++-........|.-..+|+|.
T Consensus 888 -nl~~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~svd-------~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGk 958 (1233)
T KOG1824|consen 888 -NLPKYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASVD-------GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGK 958 (1233)
T ss_pred -chHhHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccc-------hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhh
Confidence 6689999999998875 344444455554444322211 1135688899999999988888899999999999
Q ss_pred HHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHH
Q 013663 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (438)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~ 286 (438)
++..-|+. +++.+...+..+.+..|..++.++--.+...|..+++++.+.+.-++..++|++.+||..|+..+
T Consensus 959 L~l~epes-------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 959 LVLIEPES-------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HHhCChHH-------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 99887765 44455555667778888888888776777788889999999998889999999999999999999
Q ss_pred HHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchh
Q 013663 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (438)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~ 366 (438)
.+.++. -+..++..++.++|.+...-....+-+. +-+..|+.|.. | +..+
T Consensus 1032 nSaahN--KpslIrDllpeLLp~Ly~eTkvrkelIr-------------eVeMGPFKH~V----------D-----dgLd 1081 (1233)
T KOG1824|consen 1032 NSAAHN--KPSLIRDLLPELLPLLYSETKVRKELIR-------------EVEMGPFKHTV----------D-----DGLD 1081 (1233)
T ss_pred HHHHcc--CHhHHHHHHHHHHHHHHHhhhhhHhhhh-------------hhcccCccccc----------c-----chHH
Confidence 999987 3356778888888887654443222221 11233554422 1 1478
Q ss_pred hhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 367 LRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
.|++|.+|+-.+-+.+-+ .-+-.++.++...+.+. +-.|.-.+..+.-+++.|++.+.+.++.+++
T Consensus 1082 ~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh----ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~E 1148 (1233)
T KOG1824|consen 1082 LRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH----YDIKMLTFLMLARLADLCPSAVLQRLDRLVE 1148 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh----hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 899999999999988866 33455666777777664 6789999999999999999888887776653
No 18
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.2e-12 Score=123.98 Aligned_cols=373 Identities=17% Similarity=0.177 Sum_probs=259.0
Q ss_pred HHHHHHhhcC--CCCHHHHHHHHHHHHH---hhc----CCcHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHH------
Q 013663 17 ICRLLEQQIS--PSSTADKSQIWQQLQQ---YSQ----FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLR------ 80 (438)
Q Consensus 17 l~~~l~~~~s--~d~~~~r~~A~~~L~~---~~~----~p~~~~~l~~il~~-~~~~~~~~R~~A~~~Lk~~i~------ 80 (438)
+..++++.+. |+++ +|-+|...|-. |.+ +..-..+++++.+. -++++..+|..|...|-+++.
T Consensus 174 LtaIv~gmrk~e~s~~-vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAA-VRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchh-HHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 4566 99999998853 222 12223345555432 247888899888877755541
Q ss_pred ----------------------------hhhccCCHhhH--------------------------HHHHHHhhhhhh--c
Q 013663 81 ----------------------------TAYKSMSPSNQ--------------------------QYIKSELLPCLG--A 104 (438)
Q Consensus 81 ----------------------------~~w~~l~~~~~--------------------------~~i~~~ll~~l~--~ 104 (438)
..|+.+.+|.. ..+...|++.|. +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 25764333322 255567777774 1
Q ss_pred -----CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhh
Q 013663 105 -----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (438)
Q Consensus 105 -----~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 179 (438)
.++.+.++++.|+.-+++..+.+-.|..+|++.+.++++++..|+.|..+++.+.+.-...- +.+.+.
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~-------Lt~iV~ 405 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK-------LTPIVI 405 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh-------hhHHHh
Confidence 26788888899988888776667778999999999999999999999999999987554321 124578
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhH--HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc---
Q 013663 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF--VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--- 254 (438)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~--~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--- 254 (438)
..+|.++..+.|++.-||..+..+|+.++..+|+... .++..+++.+...+.| +|.+..++|+++..+++.+++
T Consensus 406 qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 406 QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999999985432 3455677777776664 588999999999999977543
Q ss_pred ------cccccHHHHHHHHhhhhcC---CChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChh-hhhhc
Q 013663 255 ------FLEPHLRNLFEYMLQVNKD---TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADD-DESLV 324 (438)
Q Consensus 255 ------~~~~~~~~li~~~~~~~~~---~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~-d~~~~ 324 (438)
...|+++.|+.-++..... .+-..|..|++.+..+... ..+...+.+.++...++..+..+-. .+-
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~--st~~vy~~v~~~~l~il~kl~q~i~~~~l-- 560 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN--STDDVYPMVQKLTLVILEKLDQTISSQIL-- 560 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3446777888888877643 4568999999999999876 4566677777777666655432211 000
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhHHhHHHHHHHHhccC
Q 013663 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSAS 401 (438)
Q Consensus 325 ~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~ 401 (438)
..+| ......+..--..+|..+...+|. .....++..+.+.++++
T Consensus 561 ------------------------------~~~d--r~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~ 608 (859)
T KOG1241|consen 561 ------------------------------SLAD--RAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK 608 (859)
T ss_pred ------------------------------cHhh--HHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC
Confidence 0000 011222223345566666666666 45577888888888774
Q ss_pred CCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 402 ~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
.+ -...+-|+.+++++++..++.+.+|.|.+.+
T Consensus 609 ~s--~~v~e~a~laV~tl~~~Lg~~F~kym~~f~p 641 (859)
T KOG1241|consen 609 RS--AVVHEEAFLAVSTLAESLGKGFAKYMPAFKP 641 (859)
T ss_pred cc--ccchHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 31 5678999999999999999998888887653
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1e-11 Score=118.88 Aligned_cols=373 Identities=16% Similarity=0.158 Sum_probs=259.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-h----hc-CCcHH---HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQ-Y----SQ-FPDFN---NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~-~----~~-~p~~~---~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
....+.++..+.++.+....-+++.-.+.- + +. +|... ..+...+ ....+.+|+.....|......
T Consensus 52 ~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~---~tps~~~q~~~~~~l~~~~~~-- 126 (569)
T KOG1242|consen 52 NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL---DTPSKSVQRAVSTCLPPLVVL-- 126 (569)
T ss_pred HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc---CCCcHHHHHHHHHHhhhHHHH--
Confidence 344556666666655432245566655542 1 12 44433 3333333 278889998888777665433
Q ss_pred ccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCch--HHHHHHHHHHhccC-ChhhHhHHHHHHHHHHh
Q 013663 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW--LELLQALVTCLDSN-DINHMEGAMDALSKICE 160 (438)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w--~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~ 160 (438)
+.......+...+.+.+..+...-|..++..++.+++..+.... ..++..+...+.+. +...|++++.++...+.
T Consensus 127 --~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~ 204 (569)
T KOG1242|consen 127 --SKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG 204 (569)
T ss_pred --hhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH
Confidence 23334456677788888888888899999999999987643222 25778888888775 45566689999999998
Q ss_pred ccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchh-hHHhHHHHHHHHHHhhCCCCHHHHH
Q 013663 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRK 239 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~ 239 (438)
.++..+ ++++-.++|.++..+.|...+||.+|..+...+....+.. ....++.++..+.. ..+..+.
T Consensus 205 ~Lg~~~--------EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~----~kWrtK~ 272 (569)
T KOG1242|consen 205 NLGPPF--------EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE----AKWRTKM 272 (569)
T ss_pred hcCCCC--------CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH----HhhhhHH
Confidence 888644 4678999999999999999999999999998888877532 22233444444433 2678899
Q ss_pred HHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcCh-
Q 013663 240 LVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD- 318 (438)
Q Consensus 240 ~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~- 318 (438)
.+++.++.++...|+.+.-.++.++|.+...+-|...+||.++.+.+..+++... .+-+..++|.++..+..+.
T Consensus 273 aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-----N~dI~~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 273 ASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-----NPDIQKIIPTLLDALADPSC 347 (569)
T ss_pred HHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999999999999999887621 2346666777777776443
Q ss_pred ---hhhhhccccccCCCCCCCCCCC-----------CccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch
Q 013663 319 ---DDESLVEAEEDESLPDRDQDLK-----------PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (438)
Q Consensus 319 ---~d~~~~~~~~~~~~~d~~~~i~-----------~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~ 384 (438)
+-+... ...+++. |.+.. ... ..+.+.++.+...++.++.-..+
T Consensus 348 ~~~e~~~~L---------~~ttFV~~V~~psLalmvpiL~R-------~l~------eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 348 YTPECLDSL---------GATTFVAEVDAPSLALMVPILKR-------GLA------ERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred chHHHHHhh---------cceeeeeeecchhHHHHHHHHHH-------HHh------hccchhhhhHHHHHHHHHHhhcC
Confidence 111110 0111110 00000 001 12356678899999999998844
Q ss_pred -----hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhh-hhhccccc
Q 013663 385 -----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEV 434 (438)
Q Consensus 385 -----~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~-~~~~l~~i 434 (438)
.++|.++|-+...+.++. +..|..+..++|.+.++.+.. +...+|.+
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~---PEvR~vaarAL~~l~e~~g~~~f~d~~p~l 458 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAV---PEVRAVAARALGALLERLGEVSFDDLIPEL 458 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHhhcccccccHH
Confidence 578889999999998887 899999999999999987633 33333433
No 20
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.57 E-value=2.3e-13 Score=129.06 Aligned_cols=234 Identities=14% Similarity=0.188 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
...+-+-++++.++.+++. .+++|++.|.+|+..|+.|...-+||.. +..|+.++.|+.+|...|++.|+-+|.+.+
T Consensus 11 LdiallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r 87 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMR 87 (1053)
T ss_pred cCHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHH
Confidence 3455677888889999999 9999999999999999999989899975 899999999999999999999999999999
Q ss_pred HHHHHHhhhhhhc--CcHHHH-------HHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 92 QYIKSELLPCLGA--ADRHIR-------STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 92 ~~i~~~ll~~l~~--~~~~vr-------~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
..||+.+.+.+.+ .+..+| +++-..+..|++.+||..||+++|.+++..+ .+-.+.+..+.+|..+.+++
T Consensus 88 ~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEv 166 (1053)
T COG5101 88 QGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEV 166 (1053)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHH
Confidence 9999999998753 344444 5677889999999999999999999998765 56788899999999998888
Q ss_pred ccccccCCCC----CC----cchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCC
Q 013663 163 PQVLDSDVPG----LA----ECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP 233 (438)
Q Consensus 163 ~~~~~~~~~~----~~----~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 233 (438)
......++.+ .+ ....++++..+.+.+.- .++.+-.+.++.+..++.|+|-.+. +...++..+..-+. .
T Consensus 167 FdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~-s 244 (1053)
T COG5101 167 FDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFN-S 244 (1053)
T ss_pred HhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhc-c
Confidence 7643322211 11 12234555555555543 4778889999999999999984332 11234444443322 2
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 013663 234 SAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 234 ~~~~~~~a~~~l~~l~~~ 251 (438)
.|+.|...++|+.+++..
T Consensus 245 ~pd~r~~tl~CLtEi~~L 262 (1053)
T COG5101 245 MPDTRVATLSCLTEIVDL 262 (1053)
T ss_pred CCchhHHHHHHHHHHHhh
Confidence 355677777777777754
No 21
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.47 E-value=4.3e-13 Score=126.05 Aligned_cols=203 Identities=21% Similarity=0.328 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHc-ccchhhHHhHHHHHHHHHHhh-------C--CCC-----HHHHHHHHHHHHHHHhhCcccccccHHH
Q 013663 198 KLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLS-------N--DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (438)
Q Consensus 198 ~~al~~l~~~~~-~~~~~~~~~~~~ll~~l~~~~-------~--~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 262 (438)
...+|++.++.. .+|+.|.+++..+++.+...+ . +++ +++|..+|+.+..+++.|.+.|.++++.
T Consensus 58 ~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~ 137 (370)
T PF08506_consen 58 KLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPT 137 (370)
T ss_dssp HHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666644 367777777777766655543 2 111 4789999999999999999999999999
Q ss_pred HHHHHhhhhc-----CCChHHHhHHHHHHHHhhccCCChhh--HHhhHHHHHH-HHHhccCcChhhhhhccccccCCCCC
Q 013663 263 LFEYMLQVNK-----DTDDDVALEACEFWHSYFEAQLPHEN--LKEFLPRLVP-VLLSNMIYADDDESLVEAEEDESLPD 334 (438)
Q Consensus 263 li~~~~~~~~-----~~~~~v~~~a~~~~~~~~~~~~~~~~--~~~~l~~l~~-~l~~~l~~~~~d~~~~~~~~~~~~~d 334 (438)
++..+++.+. ...+.+...|+.|+.++++....... .++++..++. ++++.|+.+++|++.|++ |
T Consensus 138 fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEd-------d 210 (370)
T PF08506_consen 138 FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFED-------D 210 (370)
T ss_dssp HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHH-------S
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHcc-------C
Confidence 9998887753 23577888999999998876211112 2678888887 668899999999999974 6
Q ss_pred CCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhcc---CCCCcchhhHH
Q 013663 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA---SGDEAWKDREA 411 (438)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~w~~r~a 411 (438)
|.+||| .|.| . .+..++|++|.+++..++...++.+.+.+..++++.++. ....+|+.|++
T Consensus 211 P~EYIr-----------rd~e--~---sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 211 PEEYIR-----------RDLE--G---SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp HHHHHH-----------HHSC--S---S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred HHHHHH-----------hhcc--c---cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 777886 1111 1 124799999999999999999999999988888888762 22356999999
Q ss_pred HHHHHHHHhhcc
Q 013663 412 AVLALGAIAEGC 423 (438)
Q Consensus 412 al~~l~~l~~~~ 423 (438)
|+..+++++...
T Consensus 275 Al~Li~ala~k~ 286 (370)
T PF08506_consen 275 ALYLIGALASKG 286 (370)
T ss_dssp HHHHHHHHHBSS
T ss_pred HHHHHHHHHhhh
Confidence 999999999644
No 22
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.3e-10 Score=111.41 Aligned_cols=363 Identities=17% Similarity=0.151 Sum_probs=241.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-----CCcHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013663 6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-----FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNL 79 (438)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-----~p~~~-~~l~~il~~~~~~~~~~R~~A~~~Lk~~i 79 (438)
.|.-++.....+..+++..-.|... +|+.....|..+.- +++.+ ..+..++. .....-|.-|+..+-.++
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~tps~~-~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~aa~~~ag~v 162 (569)
T KOG1242|consen 87 LQIVDPRPISIIEILLEELDTPSKS-VQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT---STKIAERAGAAYGLAGLV 162 (569)
T ss_pred ccccCcchhHHHHHHHHhcCCCcHH-HHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc---cccHHHHhhhhHHHHHHH
Confidence 4566667777888888888888888 99999999986542 33333 33333343 566667776776666655
Q ss_pred HhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHH-HHHHHHHHHHhhcc---CchHHHHHHHHHHhccCChhhHhHHHHHH
Q 013663 80 RTAYKSMSPSNQQYIKSELLPCLGAADRHIRST-VGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDAL 155 (438)
Q Consensus 80 ~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~-~a~~la~i~~~~~~---~~w~~ll~~l~~~l~~~~~~~r~~al~~l 155 (438)
+... +.......+...+-..+.+..+..++- ++.+........++ .....++|.++.++.+..+.+|+.+..+.
T Consensus 163 ~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ 240 (569)
T KOG1242|consen 163 NGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAA 240 (569)
T ss_pred cCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHH
Confidence 5431 222333455566777777765555443 33333333333333 44567889999999888899999999999
Q ss_pred HHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCH
Q 013663 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (438)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 235 (438)
..+...++.. -+..++|.++..+....+.-+.+++..++.+....|..+...++.+++.+.+.+.|..+
T Consensus 241 kai~~~~~~~-----------aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 241 KAIMRCLSAY-----------AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHhcCcc-----------hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 9998887763 36788888888887778889999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCc-ccccccHHHHHHHH-----------------------------------hhhhcCCChHHH
Q 013663 236 EVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYM-----------------------------------LQVNKDTDDDVA 279 (438)
Q Consensus 236 ~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~~~-----------------------------------~~~~~~~~~~v~ 279 (438)
++|+++.+++.++.+.-. ..+.++++.++.++ -+.+.+.+.+++
T Consensus 310 evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence 999999999988876421 22333333333332 112222222333
Q ss_pred hHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCcc
Q 013663 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (438)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~ 359 (438)
..+...+..++..=...+.+.+|++.++|.+-..+..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d------------------------------------------- 426 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD------------------------------------------- 426 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-------------------------------------------
Confidence 3332222222211012345677777777776443321
Q ss_pred ccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhcccc
Q 013663 360 DIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSE 433 (438)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~~ 433 (438)
....+|..|..+|+.+-+.+|...++.+.|.+.+.+.+... -+.|..+...++.+..+.+ +.+...+|.
T Consensus 427 ---~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~--~~~~~g~aq~l~evl~~~~v~~~~~~~~~ 496 (569)
T KOG1242|consen 427 ---AVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKS--LVDRSGAAQDLSEVLAGLGVEKVEDILPE 496 (569)
T ss_pred ---CChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchh--hhhhHHHhhhHHHHHhcccchHHHHHHHH
Confidence 12467899999999999999997779999999888866431 4667777777777776654 333344433
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=1.1e-09 Score=103.20 Aligned_cols=286 Identities=15% Similarity=0.225 Sum_probs=206.1
Q ss_pred hHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh---ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc
Q 013663 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 166 (438)
..+.+...++.++++++..||..+|..+..|++.. -...+++++..+.....+.+..+|. +...+..+++++..+-
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence 45566677788889999999999999988887764 3467888999988888777666554 6688888888887653
Q ss_pred ccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
.+ ...++.++|.+-..+...++..|...++.+.-+-..=+-.+..+++.+++++++++.|+.+++|..+=.++.
T Consensus 160 ~~------tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 160 AS------TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred cc------ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 22 236899999999999999999999888777654333234567788999999999999999999977666665
Q ss_pred HHH---hhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhh
Q 013663 247 LLI---EVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (438)
Q Consensus 247 ~l~---~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (438)
++. ...|+.+ ..++.++.++.-+.++++.++..|+..+..+... .++.+-++++.++..+++++..+++
T Consensus 234 ~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~~~s~il~~iLpc~s~~e~---- 305 (675)
T KOG0212|consen 234 EFLAEIRSSPSSM--DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLLYLSGILTAILPCLSDTEE---- 305 (675)
T ss_pred HHHHHHhcCcccc--CcccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhhhcccCCCCCcc----
Confidence 554 3455544 3467788888888889999999998877777664 3456778888888888888763221
Q ss_pred ccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHH----HHHHhhhchh--hHHhHHHHHHHH
Q 013663 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL----DVLSNVFGDE--ILPTLMPVIQAK 397 (438)
Q Consensus 324 ~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l----~~l~~~~~~~--~~~~l~~~l~~~ 397 (438)
-+.+.+|...= ..++...++. -+..+++.++..
T Consensus 306 -----------------------------------------~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~ 344 (675)
T KOG0212|consen 306 -----------------------------------------MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKY 344 (675)
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH
Confidence 12233343333 3333333331 234788888888
Q ss_pred hccCCCCcchhhHHHHHHHHHHhhcchhhhhhccccc
Q 013663 398 LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEV 434 (438)
Q Consensus 398 l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i 434 (438)
+++.. -..|-+++-.+..+-...+..+..|..+|
T Consensus 345 l~~~~---~~tri~~L~Wi~~l~~~~p~ql~~h~~~i 378 (675)
T KOG0212|consen 345 LSDDR---EETRIAVLNWIILLYHKAPGQLLVHNDSI 378 (675)
T ss_pred hhcch---HHHHHHHHHHHHHHHhhCcchhhhhccHH
Confidence 87766 67888888888877777776666555444
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.32 E-value=1.3e-09 Score=109.93 Aligned_cols=327 Identities=15% Similarity=0.115 Sum_probs=196.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH
Q 013663 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (438)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~ 95 (438)
.+++..+.+.|-. .++-+.-.+..+.. +|+......+-+..+ .+.++.+|-+|...+-+.. +++..+.+.
T Consensus 45 ~~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~ 116 (526)
T PF01602_consen 45 MEVIKLISSKDLE-LKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLI 116 (526)
T ss_dssp HHHHCTCSSSSHH-HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHH
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHH
Confidence 3444545566666 88888888888775 666544455555444 5778889988887776642 677778888
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHH-HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~-ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
..+.+.+.++++.||++++.++..+.+..+ +..+. +++.+.+.+.++++.++..|+.++..+ +.-+....
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~------- 187 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK------- 187 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-------
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-------
Confidence 889999999999999999999999998753 33333 788888889889999999999999888 22222100
Q ss_pred cchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh----------------------------------HHhHH
Q 013663 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL----------------------------------FVSMD 220 (438)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~----------------------------------~~~~~ 220 (438)
.....++..+.+.+.++++-++...++++..+....+... ...+.
T Consensus 188 -~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~ 266 (526)
T PF01602_consen 188 -SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQ 266 (526)
T ss_dssp -THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred -hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHH
Confidence 1233344444444455555555555555543333221110 01223
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhh-cCCChHHHhHHHHHHHHhhccCCChhhH
Q 013663 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN-KDTDDDVALEACEFWHSYFEAQLPHENL 299 (438)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~-~~~~~~v~~~a~~~~~~~~~~~~~~~~~ 299 (438)
.+++.+..++.++++.+|..+++++..++..++..+. +.... +..+ .+.+..+|..+++.+..++..
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~----~~~l~~~~d~~Ir~~~l~lL~~l~~~------- 334 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI----LFFLLYDDDPSIRKKALDLLYKLANE------- 334 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH----HHHHHCSSSHHHHHHHHHHHHHH--H-------
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh----hheecCCCChhHHHHHHHHHhhcccc-------
Confidence 4455555555666666666666666666655533222 11111 1122 255666777777766666642
Q ss_pred HhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHH
Q 013663 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (438)
Q Consensus 300 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~ 379 (438)
..+..+++.+.+++... . +.++|..+...++.++
T Consensus 335 -~n~~~Il~eL~~~l~~~---------------------------------------~------d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 335 -SNVKEILDELLKYLSEL---------------------------------------S------DPDFRRELIKAIGDLA 368 (526)
T ss_dssp -HHHHHHHHHHHHHHHHC-----------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHhc---------------------------------------c------chhhhhhHHHHHHHHH
Confidence 23333444554444210 0 1346777777777777
Q ss_pred hhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
..++. .....++.+...+...+ ...+..++..+..+....+
T Consensus 369 ~~~~~-~~~~~v~~l~~ll~~~~---~~~~~~~~~~i~~ll~~~~ 409 (526)
T PF01602_consen 369 EKFPP-DAEWYVDTLLKLLEISG---DYVSNEIINVIRDLLSNNP 409 (526)
T ss_dssp HHHGS-SHHHHHHHHHHHHHCTG---GGCHCHHHHHHHHHHHHST
T ss_pred hccCc-hHHHHHHHHHHhhhhcc---ccccchHHHHHHHHhhcCh
Confidence 77643 44556667767776554 4566666666766665544
No 25
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=9.7e-10 Score=100.11 Aligned_cols=193 Identities=15% Similarity=0.053 Sum_probs=144.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHH
Q 013663 52 YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE 131 (438)
Q Consensus 52 ~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ 131 (438)
.|...|. +.+..+|..|+..|+.. .. ..+...+..++.++++.+|..++.+++.+.... ..-++
T Consensus 27 ~L~~~L~---d~d~~vR~~A~~aL~~~--------~~---~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~ 90 (280)
T PRK09687 27 ELFRLLD---DHNSLKRISSIRVLQLR--------GG---QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDN 90 (280)
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHhc--------Cc---chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHH
Confidence 4566665 68999999999888743 11 234445566678899999999999999985321 11356
Q ss_pred HHHHHHHH-hccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 132 LLQALVTC-LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 132 ll~~l~~~-l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
.++.|... ..++++.+|..++.+|++++..-.. .....+..+...+.|+++.||..|+.+|+.+-.
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~------------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPL------------YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc------------cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 88888876 5678899999999999988643221 135567778888999999999999999965421
Q ss_pred cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 211 MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 211 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
+..++.|..++.|+++.+|..+..+|+.+.. .-+..++.+...+.|.+++||..|+..++.+.
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY--------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 2355667777889999999999999998721 23467778888889999999999998887654
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.31 E-value=1.3e-08 Score=103.76 Aligned_cols=256 Identities=14% Similarity=0.115 Sum_probs=163.6
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhh
Q 013663 23 QQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (438)
Q Consensus 23 ~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~ 100 (438)
.+.++|-. +||-..-.|..+.+ +|+......+-+..+ .+.++.+|-+|...|-+. -.++..+.+-..+.+
T Consensus 76 ~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~~~lkk 147 (746)
T PTZ00429 76 LAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTLEPLRR 147 (746)
T ss_pred HhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHH
Confidence 33344544 56666666655544 555332233333322 355666666665444332 245566777778888
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc------------
Q 013663 101 CLGAADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD------------ 167 (438)
Q Consensus 101 ~l~~~~~~vr~~~a~~la~i~~~~~~~-~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~------------ 167 (438)
++.+.++.||++++.+++++....+.- .-.++++.|.+.+.+.++.+...|+.+|..+++..+..+.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~ 227 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYH 227 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 889999999999999999999876421 1124667777788899999999999999998765432110
Q ss_pred -cCCC---C-----CC-------cchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-HHhHHHHHHHHHHhh
Q 013663 168 -SDVP---G-----LA-------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLS 230 (438)
Q Consensus 168 -~~~~---~-----~~-------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~ll~~l~~~~ 230 (438)
+++. + ++ ......++..+...+++.++.|..+|++++..+....+... ...+..+-..+..+
T Consensus 228 L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L- 306 (746)
T PTZ00429 228 LPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL- 306 (746)
T ss_pred hhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-
Confidence 0000 0 00 11234577778888888899999999999988776543222 22222333444444
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 231 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
...+++++..+++.+..++..+|..|.+++.. ++-...|+ ..|+...++.+..++..
T Consensus 307 ~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~----Ff~~~~Dp-~yIK~~KLeIL~~Lane 363 (746)
T PTZ00429 307 SRRDAETQYIVCKNIHALLVIFPNLLRTNLDS----FYVRYSDP-PFVKLEKLRLLLKLVTP 363 (746)
T ss_pred hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHh----hhcccCCc-HHHHHHHHHHHHHHcCc
Confidence 34567899999999999999988877665433 22223444 45899999999998865
No 27
>PRK09687 putative lyase; Provisional
Probab=99.30 E-value=1.2e-09 Score=99.45 Aligned_cols=225 Identities=13% Similarity=0.027 Sum_probs=164.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHH
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~ 96 (438)
+..++..+.++|.. +|..|...|.++.. +..+..+..++. +.++.+|..|+..|...-. +.........
T Consensus 25 ~~~L~~~L~d~d~~-vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~------~~~~~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSL-KRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGM------AKRCQDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHH-HHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC------CccchHHHHH
Confidence 33444555678888 99999999987764 555565666554 6789999999999976411 1111223334
Q ss_pred Hhhhh-hhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCc
Q 013663 97 ELLPC-LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (438)
Q Consensus 97 ~ll~~-l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (438)
.|... +.++++.||..++.+++.+.... ....+.+++.+...+.+.++.+|..++..|+.+ +
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~------------ 156 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N------------ 156 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C------------
Confidence 45555 46789999999999999985432 223477888888888888999999999999543 1
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
....++.|...+.|+++.||..|+.+|+.+ ..-. +..++.|...+.|.++.||..|...|+.+-.
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~~~-------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----- 221 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSN-KYDN-------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----- 221 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-----
Confidence 155778999999999999999999999987 2111 2455566777789999999999999987432
Q ss_pred ccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 256 ~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+..+|.++..+++.+ ++..+++.++.+..
T Consensus 222 -----~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 -----KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred -----hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 367777777777644 77788887777654
No 28
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.8e-10 Score=117.76 Aligned_cols=238 Identities=15% Similarity=0.170 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC
Q 013663 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (438)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~ 87 (438)
+.....++.+++....+| ++. .|.+|.+.+.+++..|+.|...-.++.. +..+.+|++|..+|-+.++++|+.+|
T Consensus 5 ~~~l~~~lldavv~~~~~~~s~~-~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 5 DNKLDSELLDAVVVTLNPEGSNE-ERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred chhHHHHHHHhHHHHhCcccchH-HHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCC
Confidence 345567788888888877 455 8999999999999999888777788875 78999999999999999999999999
Q ss_pred HhhHHHHHHHhhhhhhc--C-------cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 88 PSNQQYIKSELLPCLGA--A-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 88 ~~~~~~i~~~ll~~l~~--~-------~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
.+.+.++|+.++..+.. + ...++.+++.++..|++.++++.||+++|.+.+.+. .++.+++.++.++..+
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSK-TSETVCELSMIILLLL 160 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhh-cCcccchHHHHHHHHH
Confidence 99999999999888642 1 456789999999999999999999999999999887 4567888899999999
Q ss_pred HhccccccccCCCCC----CcchhhhHHHH----HHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh
Q 013663 159 CEDIPQVLDSDVPGL----AECPINIFLPR----LLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS 230 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~----~~~~~~~il~~----l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~ 230 (438)
.+++-..-+....+. +...+...+.. +.......+.++-.+++.++.+++.|+|-.+.-..+. +..++...
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~-l~~~l~~~ 239 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNI-LELLLNKF 239 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhh-HHHHHHhc
Confidence 998876432211110 00111111222 2222223334488899999999999998433212222 33333322
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCc
Q 013663 231 NDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 231 ~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
. +.+..|-.+++|+..++....
T Consensus 240 l-n~~~~r~~al~CL~ei~s~~~ 261 (1041)
T KOG2020|consen 240 L-NAPELRNNALSCLTELLSRKR 261 (1041)
T ss_pred c-chHHHHHHHHHHHHHHHhccc
Confidence 2 357899999999999998753
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.29 E-value=2.1e-09 Score=108.61 Aligned_cols=368 Identities=16% Similarity=0.132 Sum_probs=226.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
..+++..+++... .+.. .++.|-..|-.+.. ..+.-.....++..-.+.+...|+++-..+..... -+++..
T Consensus 5 ~~~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-----~~~~~~ 77 (526)
T PF01602_consen 5 ISQELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLH-----EDPELL 77 (526)
T ss_dssp HHHHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT-----TSHHHH
T ss_pred HHHHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-----cchhHH
Confidence 3456777777655 3555 67777777655442 11111223344332238899999999888876533 355656
Q ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCC
Q 013663 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (438)
-.+-+.+.+-+.++++.+|..+-.+++.+.. +.-.+.+++.+.+.+.++++.+|..|+.++..+.+..|+.+
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~----- 149 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV----- 149 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH-----
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH-----
Confidence 6677888888889999999999999999874 34557899999999999999999999999999999877642
Q ss_pred CCCcchhhh-HHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 172 GLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 172 ~~~~~~~~~-il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
.. +++.+.+.+.|+++.|+.+|+.++..+ ...++.+...++.++..+.+.+..+++..+..+++.+..++.
T Consensus 150 -------~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 150 -------EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp -------HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred -------HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 33 789999999999999999999999988 433333234456667777777677888888888888876665
Q ss_pred hCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhc-----c
Q 013663 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV-----E 325 (438)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~-----~ 325 (438)
..+..... ..+++.+...+++.+..|+..|+.++..+... .+.+..+++.+.+.+...+..+... .
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-------~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-------PELLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-------HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-------hHHHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 43332211 34555555555556667777777666665543 1134444444444444332221100 0
Q ss_pred ccccCCCCCCCCCCC-CccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhc-cCCC
Q 013663 326 AEEDESLPDRDQDLK-PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-ASGD 403 (438)
Q Consensus 326 ~~~~~~~~d~~~~i~-~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~ 403 (438)
.=-.. .+ ..+. +.. .... ...++ ..++|..+.+++..++..-. +..+++.+...+. .++
T Consensus 293 ~l~~~---~~-~~v~~~~~---~~~~---l~~~~-----d~~Ir~~~l~lL~~l~~~~n---~~~Il~eL~~~l~~~~d- 353 (526)
T PF01602_consen 293 QLAQS---NP-PAVFNQSL---ILFF---LLYDD-----DPSIRKKALDLLYKLANESN---VKEILDELLKYLSELSD- 353 (526)
T ss_dssp HHCCH---CH-HHHGTHHH---HHHH---HHCSS-----SHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHC---
T ss_pred Hhhcc---cc-hhhhhhhh---hhhe---ecCCC-----ChhHHHHHHHHHhhcccccc---hhhHHHHHHHHHHhccc-
Confidence 00000 00 0000 000 0000 00011 25788888888888875433 3334444444443 335
Q ss_pred CcchhhHHHHHHHHHHhhcchhhhhhcccc
Q 013663 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSE 433 (438)
Q Consensus 404 ~~w~~r~aal~~l~~l~~~~~~~~~~~l~~ 433 (438)
...|..++..++.+++........+++.
T Consensus 354 --~~~~~~~i~~I~~la~~~~~~~~~~v~~ 381 (526)
T PF01602_consen 354 --PDFRRELIKAIGDLAEKFPPDAEWYVDT 381 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHGSSHHHHHHH
T ss_pred --hhhhhhHHHHHHHHHhccCchHHHHHHH
Confidence 6689999999999998766544444433
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.27 E-value=2.5e-09 Score=113.47 Aligned_cols=272 Identities=18% Similarity=0.131 Sum_probs=160.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHh
Q 013663 19 RLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSEL 98 (438)
Q Consensus 19 ~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~l 98 (438)
.++..+.++|.. +|+.|-..|.++.. |+....|...|. +.++.+|..|+..|...... .+. ...+
T Consensus 625 ~L~~~L~D~d~~-VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~----~~~------~~~L 689 (897)
T PRK13800 625 ELAPYLADPDPG-VRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEV----LPP------APAL 689 (897)
T ss_pred HHHHHhcCCCHH-HHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhc----cCc------hHHH
Confidence 333444467777 88888777776653 455566666663 56777887777777554221 111 1244
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchh
Q 013663 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (438)
Q Consensus 99 l~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 178 (438)
...|.++++.||..++.+|+.+.... ...++..+.++++.+|..|+..|+.+ .. .
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~~~~~--------~~~l~~~L~D~d~~VR~~Av~aL~~~----~~-------------~ 744 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRALRAGD--------AALFAAALGDPDHRVRIEAVRALVSV----DD-------------V 744 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhccCC--------HHHHHHHhcCCCHHHHHHHHHHHhcc----cC-------------c
Confidence 45566677778877777777653211 12345567777777777777777653 10 0
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 258 (438)
+.+...+.|++..||..+.++|+.+-..-+ .-++.|..+++|+++.+|..++..|..+...
T Consensus 745 ----~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------- 805 (897)
T PRK13800 745 ----ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------- 805 (897)
T ss_pred ----HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------
Confidence 224566777778888877777776643221 1133344556777777888877777765321
Q ss_pred cHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCC
Q 013663 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (438)
Q Consensus 259 ~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~ 338 (438)
+.+.+.+...++|.+..||..|.+.+..+... .. ++.|+..+.
T Consensus 806 --~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------~a----~~~L~~~L~----------------------- 848 (897)
T PRK13800 806 --PDDVAAATAALRASAWQVRQGAARALAGAAAD--------VA----VPALVEALT----------------------- 848 (897)
T ss_pred --chhHHHHHHHhcCCChHHHHHHHHHHHhcccc--------ch----HHHHHHHhc-----------------------
Confidence 12334455556777777887777777655321 11 123333332
Q ss_pred CCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHH
Q 013663 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (438)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~ 418 (438)
| .++.+|..|..+|..+ ..-+...+.+...+++.+ ..+|.+|..+|..
T Consensus 849 -------------------D----~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d---~~Vr~~A~~aL~~ 896 (897)
T PRK13800 849 -------------------D----PHLDVRKAAVLALTRW------PGDPAARDALTTALTDSD---ADVRAYARRALAH 896 (897)
T ss_pred -------------------C----CCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCC---HHHHHHHHHHHhh
Confidence 0 1357788888887775 112234555666677766 7788888777753
No 31
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=7.1e-10 Score=105.81 Aligned_cols=308 Identities=14% Similarity=0.128 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh-ccCCHhhHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhcc--Cc--hHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAY-KSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGI--AG--WLELLQA 135 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w-~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~--~~--w~~ll~~ 135 (438)
+.++..+..|...+|....+.= ..+..-.+..+...+.+++. +.++.++--+|.++..||.+... .. -.+.+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 6677778888888888775421 22333344455566666675 56799999999999999987532 11 1357888
Q ss_pred HHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCH-HHHHHHHHHHHHHHccc-ch
Q 013663 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLM-PS 213 (438)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~-~~ 213 (438)
+++++.+++..+++-|+++|+.++.+.+.. +. + -.-..+++.++..+..+.. .....+..+|.+++..- |.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd----~--vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RD----Y--VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HH----H--HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999998887753 10 0 0123466777777776654 56667899999998876 43
Q ss_pred hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 214 ~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.-...+..++++|..++.+.|+++...+|+++..+....++.+.-.+. .+++.++..+.+.+..++..|+..++.++..
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 334566788999999999999999999999999999877766544443 6778888888888888999999888876653
Q ss_pred CCChhhHHh-hHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhH
Q 013663 293 QLPHENLKE-FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (438)
Q Consensus 293 ~~~~~~~~~-~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a 371 (438)
. -.-..- .-...+|.+...+...+ ..++|+.|
T Consensus 310 ~--d~QTq~vi~~~~L~~l~~ll~~s~---------------------------------------------~~~ikkEA 342 (514)
T KOG0166|consen 310 S--DEQTQVVINSGALPVLSNLLSSSP---------------------------------------------KESIKKEA 342 (514)
T ss_pred c--HHHHHHHHhcChHHHHHHHhccCc---------------------------------------------chhHHHHH
Confidence 1 000000 11123444433333110 12468889
Q ss_pred HHHHHHHHhhhch---hh-HHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhh
Q 013663 372 AAALDVLSNVFGD---EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (438)
Q Consensus 372 ~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~ 426 (438)
.-+++.++....+ .+ -..++|.+...+++.+ .+.|..|..+++.++-++...
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e---f~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE---FDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc---hHHHHHHHHHHHhhcccCCHH
Confidence 9999999876554 22 2558899999999988 999999999999988766533
No 32
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.9e-09 Score=103.01 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHhhc----------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH-----H
Q 013663 32 DKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----S 96 (438)
Q Consensus 32 ~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~-----~ 96 (438)
.|-.|.=.|.++.. ..+.++.+..++. +.+.++|.-|.+.|.|.... ++..+.++. .
T Consensus 126 lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~---s~~~~v~eQavWALgNIagd-----s~~~Rd~vl~~g~l~ 197 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS---SPSADVREQAVWALGNIAGD-----SPDCRDYVLSCGALD 197 (514)
T ss_pred HHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc---CCcHHHHHHHHHHHhccccC-----ChHHHHHHHhhcchH
Confidence 77777777776652 2345666666665 78999999999999998654 456666554 3
Q ss_pred HhhhhhhcCcH-HHHHHHHHHHHHHHHhh-ccCch---HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCC
Q 013663 97 ELLPCLGAADR-HIRSTVGTIVSVVVQLG-GIAGW---LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 97 ~ll~~l~~~~~-~vr~~~a~~la~i~~~~-~~~~w---~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (438)
.|+..+..+.+ ...+.+.++++.++++- ++..| ..++|.|...+.+.|+.+..-|+++++++.+.-++.++.
T Consensus 198 pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~--- 274 (514)
T KOG0166|consen 198 PLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQM--- 274 (514)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH---
Confidence 46666665543 67888899999999986 44444 578999999999999999999999999999887765431
Q ss_pred CCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhC-CCCHHHHHHHHHHHHHHH
Q 013663 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~ 249 (438)
-.-..+.|.+..+|.+++..|+..|++++++++..........++ ..++.+..++. ++...+|+.||+++..+.
T Consensus 275 ----vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 275 ----VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred ----HHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 123557899999999999999999999999977765432222222 45666666665 556679999999999999
Q ss_pred hhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 250 EVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 250 ~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
...++.+...+. .++|.++..++..+.++|+.|.=.++.++..
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 877777655554 7999999999988999999998777766554
No 33
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.20 E-value=1e-10 Score=85.02 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=62.7
Q ss_pred HHHHHHHhhcC-CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc--------cCCHhhHHHHHHHhhhhhh
Q 013663 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (438)
Q Consensus 36 A~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~--------~l~~~~~~~i~~~ll~~l~ 103 (438)
||++|++++++ |+|+..|++++.+ .+.++.+|++|+++|||.|.++|. .++++.+..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999998 9999999999975 477999999999999999999999 8999999999999999874
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.17 E-value=1.3e-08 Score=111.75 Aligned_cols=325 Identities=11% Similarity=0.069 Sum_probs=228.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcC----------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH--
Q 013663 26 SPSSTADKSQIWQQLQQYSQF----------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY-- 93 (438)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~~----------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~-- 93 (438)
..+.+ +|.+|-..|..+... -+.++.|...|. +.+..+|..|+..+++.... +++++..
T Consensus 415 ~~~~e-vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~---s~s~~iQ~~A~~~L~nLa~~-----ndenr~aIi 485 (2102)
T PLN03200 415 MATAD-VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG---LSSEQQQEYAVALLAILTDE-----VDESKWAIT 485 (2102)
T ss_pred cCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Confidence 34566 999999998877742 235667778887 45789999999999887432 3344433
Q ss_pred ---HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-Cc-h--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc
Q 013663 94 ---IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AG-W--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 94 ---i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~-w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 166 (438)
....|+++|.+++..++..++.+|++++.+... .. - .+.+|.|++.++++++..+..++.+|..++..-.
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d--- 562 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD--- 562 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc---
Confidence 335677888888999999999999999974311 11 1 2467889999999999999999999998876422
Q ss_pred ccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-H-H--hHHHHHHHHHHhhCCCCHHHHHHHH
Q 013663 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-F-V--SMDQYLQGLFLLSNDPSAEVRKLVC 242 (438)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~-~--~~~~ll~~l~~~~~~~~~~~~~~a~ 242 (438)
+..++.+...+..+++.++..+++++++++......- . . ..+.-++.|.+++.++++..++.|+
T Consensus 563 ------------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa 630 (2102)
T PLN03200 563 ------------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA 630 (2102)
T ss_pred ------------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH
Confidence 2244667788888889999999999999877554211 1 1 0124567777888888999999999
Q ss_pred HHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhh
Q 013663 243 AAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDD 320 (438)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d 320 (438)
.++..+....++.....+ ...++.++..+++.+.+++..|...+..+..... .+....++ ...+|.|+..+...+
T Consensus 631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~v~~GaV~pL~~LL~~~d-- 707 (2102)
T PLN03200 631 SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSYAAEDAIKPLIKLAKSSS-- 707 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCCHHHHHHHHhCCC--
Confidence 999999987665432222 3567777777888889999999888888775411 11111222 246777777664211
Q ss_pred hhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhH-HhHHHHHHHH
Q 013663 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL-PTLMPVIQAK 397 (438)
Q Consensus 321 ~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~l~~~l~~~ 397 (438)
..++..|..+|..++..-.. ++. ...++.+...
T Consensus 708 --------------------------------------------~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~l 743 (2102)
T PLN03200 708 --------------------------------------------IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRV 743 (2102)
T ss_pred --------------------------------------------hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHH
Confidence 23445577777777765422 222 3456777778
Q ss_pred hccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 398 LSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 398 l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
+++++ .+.|+.|..++..++.+.+
T Consensus 744 Lr~G~---~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 744 LREGT---LEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHhCC---hHHHHHHHHHHHHHHhCCC
Confidence 88877 7889999999999998765
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.12 E-value=4.4e-07 Score=92.81 Aligned_cols=366 Identities=13% Similarity=0.056 Sum_probs=218.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
++|...| .+.+.. .|+.|-+.+-.+.. .-+.......++..-.+.+..+|+++-..+.+.. ...++..-.
T Consensus 35 ~ELr~~L---~s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya-----~~~pelalL 105 (746)
T PTZ00429 35 AELQNDL---NGTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA-----RLQPEKALL 105 (746)
T ss_pred HHHHHHH---HCCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----ccChHHHHH
Confidence 4454444 356666 77777777655442 2222222333333223789999999999988763 344555556
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
.-+.+.+-+.++++.+|..+-..++.|-. +.-.+.+++.+.+++.+.++.+|..|+.++..+....++.+.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~------ 176 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY------ 176 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc------
Confidence 67788888889999999988888776643 344567788888899999999999999999999887665431
Q ss_pred CcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
...+++.+...+.|.++.|...|+.+|..+....|+.+. .....+..++..+.+-++..+..++++|... .|
T Consensus 177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P 248 (746)
T PTZ00429 177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQ---RP 248 (746)
T ss_pred ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CC
Confidence 234667788889999999999999999998766554332 2223344445555544566677777777542 22
Q ss_pred ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhc---cccccC
Q 013663 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV---EAEEDE 330 (438)
Q Consensus 254 ~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~---~~~~~~ 330 (438)
.. ......++..+...+++.+..|...|+.++..+.... ....+...+..+.+.++..+. .+.++... .-. .=
T Consensus 249 ~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~-~i 324 (746)
T PTZ00429 249 SD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIH-AL 324 (746)
T ss_pred CC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHH-HH
Confidence 21 2223467777777778888899999988877776431 112223333333333332221 11111000 000 00
Q ss_pred CCCCCCC---CCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCcch
Q 013663 331 SLPDRDQ---DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWK 407 (438)
Q Consensus 331 ~~~d~~~---~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~ 407 (438)
-...|.- +++ .|++. - .| ...+|..+.++|-.++. +.-+..++.-+..+..+.+ ..
T Consensus 325 ~~~~P~lf~~~~~-~Ff~~--------~-~D-----p~yIK~~KLeIL~~Lan---e~Nv~~IL~EL~eYa~d~D---~e 383 (746)
T PTZ00429 325 LVIFPNLLRTNLD-SFYVR--------Y-SD-----PPFVKLEKLRLLLKLVT---PSVAPEILKELAEYASGVD---MV 383 (746)
T ss_pred HHHCHHHHHHHHH-hhhcc--------c-CC-----cHHHHHHHHHHHHHHcC---cccHHHHHHHHHHHhhcCC---HH
Confidence 0000000 000 00000 0 11 12367777777776653 3333444455555555666 78
Q ss_pred hhHHHHHHHHHHhhcchhhhhhcc
Q 013663 408 DREAAVLALGAIAEGCIKGLYPHL 431 (438)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l 431 (438)
.+..++.++|.++...++....++
T Consensus 384 f~r~aIrAIg~lA~k~~~~a~~cV 407 (746)
T PTZ00429 384 FVVEVVRAIASLAIKVDSVAPDCA 407 (746)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHH
Confidence 899999999999976554433333
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.12 E-value=1.7e-08 Score=100.08 Aligned_cols=272 Identities=19% Similarity=0.189 Sum_probs=191.9
Q ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcc
Q 013663 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (438)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (438)
++.++.+.+...-..++.+|..+.....+ ..-+++.+.+...+..+++.+|..++..++.+.++-..... . -
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~-----~--~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQ-----L--L 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHH-----H--h
Confidence 67777766666667788889988876533 44788999999999999999999999999988876544221 0 1
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
.-..+++.+..++.+++..|...|.+++..+...-+ .+...++ .++..+..++..++..+|..++++++.+++..++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 136689999999999999999999999999987532 2221111 22555666666657789999999999999888777
Q ss_pred ccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCC
Q 013663 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (438)
Q Consensus 256 ~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d 334 (438)
+..... .+++.++..++++|.-++..|++.+..+++.+...+++.. ..+++.|...+....+|
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~d-------------- 258 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEED-------------- 258 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccC--------------
Confidence 644332 5889999999887778899999999999986432222221 13566666655432111
Q ss_pred CCCCCCCccccCCCCCCCCCCCCccccccchhhh-hhHHHHHHHHHhhhch---hhHHhHHHHHHHHhccCCCCcchhhH
Q 013663 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR-KCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDRE 410 (438)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r-~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~w~~r~ 410 (438)
| + ..++. ......++.++..-+. ..+|.++..+..++.+.| ...+.
T Consensus 259 p------------------------~---~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 259 P------------------------R---LSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred C------------------------c---ccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 1 0 01111 1133666777765333 345778888888888887 88999
Q ss_pred HHHHHHHHHhhcc
Q 013663 411 AAVLALGAIAEGC 423 (438)
Q Consensus 411 aal~~l~~l~~~~ 423 (438)
+|+-++|.++...
T Consensus 309 ~A~dtlg~igst~ 321 (503)
T PF10508_consen 309 VAFDTLGQIGSTV 321 (503)
T ss_pred HHHHHHHHHhCCH
Confidence 9999999998543
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=1.7e-08 Score=107.21 Aligned_cols=243 Identities=20% Similarity=0.151 Sum_probs=170.1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCch
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW 129 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w 129 (438)
...|...|. +.++.+|..|+..|... + ++ ...+.|.+.|.++++.||..++..|+.+......
T Consensus 623 ~~~L~~~L~---D~d~~VR~~Av~~L~~~----~---~~----~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--- 685 (897)
T PRK13800 623 VAELAPYLA---DPDPGVRRTAVAVLTET----T---PP----GFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--- 685 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhhh----c---ch----hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---
Confidence 345666664 78999999999888754 1 22 2455677888899999999999999888643211
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
-+.+...+.++++.+|..++..|..+-. . . ...+.+.+.|+++.||..|+++|+.+-.
T Consensus 686 ---~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~-------------~----~~~l~~~L~D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 686 ---APALRDHLGSPDPVVRAAALDVLRALRA--G-------------D----AALFAAALGDPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred ---hHHHHHHhcCCCHHHHHHHHHHHHhhcc--C-------------C----HHHHHHHhcCCCHHHHHHHHHHHhcccC
Confidence 2456667777889999999998876421 0 0 1346678899999999999999987411
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
+ +.+..++.|+++.+|..+.+.|..+....+ ..++.+...++|.+..||..|+..+..+
T Consensus 744 --~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 --V-----------ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred --c-----------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 0 124456788999999999999987764322 2255566778888999999999888776
Q ss_pred hccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhh
Q 013663 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (438)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~ 369 (438)
.... .+.+.++..+. + ++|.+|.
T Consensus 803 g~~~-----------~~~~~l~~aL~-----------------------------------------d-----~d~~VR~ 825 (897)
T PRK13800 803 GCPP-----------DDVAAATAALR-----------------------------------------A-----SAWQVRQ 825 (897)
T ss_pred CCcc-----------hhHHHHHHHhc-----------------------------------------C-----CChHHHH
Confidence 5321 01112222221 1 1378999
Q ss_pred hHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Q 013663 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (438)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l 419 (438)
.|..+|+.+. . +..++.+...+++++ |.+|.+|+.+|+.+
T Consensus 826 ~Aa~aL~~l~----~---~~a~~~L~~~L~D~~---~~VR~~A~~aL~~~ 865 (897)
T PRK13800 826 GAARALAGAA----A---DVAVPALVEALTDPH---LDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcc----c---cchHHHHHHHhcCCC---HHHHHHHHHHHhcc
Confidence 9999998653 2 223456666778888 99999999999997
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.11 E-value=1.6e-07 Score=93.25 Aligned_cols=252 Identities=15% Similarity=0.135 Sum_probs=173.7
Q ss_pred CCCCHHHHHHHHHHHHHhhc--C-----CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHh
Q 013663 26 SPSSTADKSQIWQQLQQYSQ--F-----PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSEL 98 (438)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~--~-----p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~l 98 (438)
+.+.+ ....+...|..+-. . |.+...+...|. +.++.+|.+|+..+++.+.+.=.....-.-..+...+
T Consensus 49 ~~~~e-~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 49 TSNRE-QVELICDILKRLLSALSPDSLLPQYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI 124 (503)
T ss_pred hcChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence 34444 56666666776543 2 334444545554 6889999999999988775421100001123456678
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHHhhccCchHH-----HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE-----LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 99 l~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~-----ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
+.++.+++..|...++.++..++++.. .... +++.|...+...+..+|..++.++..++...+..+.-
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~----- 197 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA----- 197 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH-----
Confidence 888999999999999999999998642 2222 3777777777667788999999999988776654320
Q ss_pred CcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH--HHHHHHHHhhC----CC-CHHHH-HHHHHHH
Q 013663 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSN----DP-SAEVR-KLVCAAF 245 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~ll~~l~~~~~----~~-~~~~~-~~a~~~l 245 (438)
-.-..+++.++..+.+.+.-|+..|++++..++. .+.. ..++. .+++.+...+. |+ -..+. -..++.+
T Consensus 198 --~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 198 --VVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred --HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 0113489999999999999999999999999988 3322 22221 35555555553 33 11222 2344677
Q ss_pred HHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 246 ~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
+.++...|..+....+.++..+.....+.+...+..|++.|+.++.+
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 77777666666667788888888888888999999999999999876
No 39
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.10 E-value=3.3e-08 Score=99.94 Aligned_cols=351 Identities=15% Similarity=0.128 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---C----CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---F----PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~----p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
+..-.++......+-.-++.++|+.+...+..+.+ + .+....+.++.. +....+|..|.-.+-+.....
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~---DdqdsVr~~a~~~~~~l~~l~- 307 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR---DDQDSVREAAVESLVSLLDLL- 307 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh---cchhhHHHHHHHHHHHHHHhc-
Confidence 34445677777777666665599999999987663 1 123334444444 456899998887776665542
Q ss_pred ccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~-~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
. -+.+..+.+.+.+++...+++..+|..++.....+....+ ...|+++.+.....+.+..+..|.....-...++...
T Consensus 308 ~-~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 308 D-DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred C-CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 1 1226677788888888899999999999998888877654 4678999999999998887888887777777777766
Q ss_pred ccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHH
Q 013663 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~ 242 (438)
...... .-..+.++|.+...+.+.+..||.+............|. ...+..+++.+...+++..+.|+.+..
T Consensus 387 ~~~~~~------~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli 458 (759)
T KOG0211|consen 387 NASCYP------NIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLI 458 (759)
T ss_pred Cccccc------ccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhH
Confidence 632111 123466789999999999999998877666555444441 122334556666667788899999998
Q ss_pred HHHHHHHhhCc-ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhh
Q 013663 243 AAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (438)
Q Consensus 243 ~~l~~l~~~~~-~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (438)
+.+..+-.... .-+..+....+|.+.....+....+|...++++..++... ..+.+.+ .+-+.+..|+.
T Consensus 459 ~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~-~~~~~~~---~~~~l~~~~l~------ 528 (759)
T KOG0211|consen 459 DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL-GVEFFDE---KLAELLRTWLP------ 528 (759)
T ss_pred HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh-hhHHhhH---HHHHHHHhhhh------
Confidence 87754443321 1222344577777777777778899999999888877651 1111111 22223333321
Q ss_pred hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhcc
Q 013663 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSA 400 (438)
Q Consensus 322 ~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~ 400 (438)
+-++++|.+|...+..++..+|. +.....+|.+..+..+
T Consensus 529 ----------------------------------------d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 529 ----------------------------------------DHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQ 568 (759)
T ss_pred ----------------------------------------hhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcC
Confidence 11467888888888888888886 5666677776666666
Q ss_pred CCCCcchhhHHHHHHHHHHhhcchhhh
Q 013663 401 SGDEAWKDREAAVLALGAIAEGCIKGL 427 (438)
Q Consensus 401 ~~~~~w~~r~aal~~l~~l~~~~~~~~ 427 (438)
++ |..|.+.++++..+++.++..+
T Consensus 569 ~~---y~~R~t~l~si~~la~v~g~ei 592 (759)
T KOG0211|consen 569 DN---YLVRMTTLFSIHELAEVLGQEI 592 (759)
T ss_pred cc---cchhhHHHHHHHHHHHHhccHH
Confidence 65 8888888888888888777554
No 40
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.09 E-value=3.9e-07 Score=86.61 Aligned_cols=367 Identities=14% Similarity=0.133 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhhcCCCC--H--HHHHHHHHHHHHhhcCCc---HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 13 GFNEICRLLEQQISPSS--T--ADKSQIWQQLQQYSQFPD---FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~--~--~~r~~A~~~L~~~~~~p~---~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
.+..++.+|.. +++|. + ++-.+|...|+-|.+.-+ .-+.+-.+=.+-.+.+=.-|..|...+...+...
T Consensus 322 vlP~lL~LL~~-q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp--- 397 (858)
T COG5215 322 VLPELLSLLEK-QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP--- 397 (858)
T ss_pred HHHHHHHHHHh-cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc---
Confidence 34455555554 22221 1 156778888876654211 1112222222212556667778888887766421
Q ss_pred CCHhhHHHHHHH----hhhhhhcCcHHHHHHHHHHHHHHHHhh-----ccCchHHHHHHHHHHhccCChhhHhHHHHHHH
Q 013663 86 MSPSNQQYIKSE----LLPCLGAADRHIRSTVGTIVSVVVQLG-----GIAGWLELLQALVTCLDSNDINHMEGAMDALS 156 (438)
Q Consensus 86 l~~~~~~~i~~~----ll~~l~~~~~~vr~~~a~~la~i~~~~-----~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~ 156 (438)
+...+..+.+. ++..+.++.-.|+..+|++++.|+.+. +....+.........+.+ .|.......+...
T Consensus 398 -~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~ 475 (858)
T COG5215 398 -CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKE 475 (858)
T ss_pred -cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHH
Confidence 22333334333 344445667788999999999999874 223344444444444443 3555566677777
Q ss_pred HHHhccccccccCCCCCCcchhhhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHcccchhhHHhHHHH-----------H
Q 013663 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY-----------L 223 (438)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~l-----------l 223 (438)
.+++++++..+. .+.++.++-..++..+++.-. +.+...|.++.++|+.++.+.|+...+.+..+ +
T Consensus 476 nlv~h~a~a~~~-~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~i 554 (858)
T COG5215 476 NLVDHIAKAVRE-VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECI 554 (858)
T ss_pred hHHHhhhhhhcc-ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 888888765421 122222233444444444332 35778999999999999999987654433322 2
Q ss_pred HHHHHhhCCCC----HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChH-HHhHHHHHHHHhhccCCChhh
Q 013663 224 QGLFLLSNDPS----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDD-VALEACEFWHSYFEAQLPHEN 298 (438)
Q Consensus 224 ~~l~~~~~~~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~-v~~~a~~~~~~~~~~~~~~~~ 298 (438)
+..-+.+.-.| .++..+.+..+..++...+..+.+.-.+++.++++.++..+.. +....+..++.++.+ ..+.
T Consensus 555 sv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s--l~e~ 632 (858)
T COG5215 555 SVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTS--LEER 632 (858)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH--HHHH
Confidence 22222221111 4778888999999999999888888888999999988654222 222223333444433 3345
Q ss_pred HHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 013663 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (438)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l 378 (438)
+..|+++.+|-+.+.+...+ +-+-..|.-+++.+
T Consensus 633 Fe~y~~~fiPyl~~aln~~d----------------------------------------------~~v~~~avglvgdl 666 (858)
T COG5215 633 FEQYASKFIPYLTRALNCTD----------------------------------------------RFVLNSAVGLVGDL 666 (858)
T ss_pred HHHHHhhhhHHHHHHhcchh----------------------------------------------HHHHHHHHHHHHHH
Confidence 78899999998888775322 23345699999999
Q ss_pred HhhhchhhH---HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhhhcccccc
Q 013663 379 SNVFGDEIL---PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 379 ~~~~~~~~~---~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
+..+|..+. ..+...+.+.++++. ..-..|=|.+.+||-|+-..+..+.+||+-||
T Consensus 667 antl~~df~~y~d~~ms~LvQ~lss~~-~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 667 ANTLGTDFNIYADVLMSSLVQCLSSEA-THRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcChh-hccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999665 446777778887753 11446779999999999999888888888765
No 41
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.3e-08 Score=96.21 Aligned_cols=278 Identities=13% Similarity=0.076 Sum_probs=198.8
Q ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHhhc-cCc---hHHHHHHHHHH-hccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 98 LLPCLGAADRHIRSTVGTIVSVVVQLGG-IAG---WLELLQALVTC-LDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~la~i~~~~~-~~~---w~~ll~~l~~~-l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
+.+.+++.-..-|+++|.-+-.+++... .+. -..++..+..- ..+++.+.|.|++..+..+.-.++..-
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~------ 78 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD------ 78 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc------
Confidence 4455666667779999999999998652 222 24566655443 345677888899999988877776532
Q ss_pred CCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
..++..+++.++.+++|++..||-.|++.+++++....+.+..+++.++.+++++..|.+..+|. +.+.+.++++.-
T Consensus 79 --~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdI 155 (675)
T KOG0212|consen 79 --AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDI 155 (675)
T ss_pred --HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHh
Confidence 14789999999999999999999999999999999888878889999999999999988877764 446666666532
Q ss_pred c--ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccC
Q 013663 253 P--SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (438)
Q Consensus 253 ~--~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~ 330 (438)
. +.-.-.++.++|++-.-+-..+...|+..++.+..+-..+ . -.+-.|++.+++.+++++.+..
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~-~~m~~yl~~~ldGLf~~LsD~s------------ 221 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-D-LEMISYLPSLLDGLFNMLSDSS------------ 221 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-c-HHHHhcchHHHHHHHHHhcCCc------------
Confidence 1 1113367899999887777778899987777665554432 1 2345788999999999986432
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---h-hHHhHHHHHHHHhccCCCCcc
Q 013663 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E-ILPTLMPVIQAKLSASGDEAW 406 (438)
Q Consensus 331 ~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~-~~~~l~~~l~~~l~~~~~~~w 406 (438)
..+|..+..+++.+-..... . -.+..++.+...+++++ .
T Consensus 222 ----------------------------------~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~---~ 264 (675)
T KOG0212|consen 222 ----------------------------------DEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE---P 264 (675)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc---H
Confidence 23454455555444433322 2 34667777777777777 7
Q ss_pred hhhHHHHHHHHHHhhcchhhhhhcccccc
Q 013663 407 KDREAAVLALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
..+.-|+..+.....-.+..+.++++.|+
T Consensus 265 ~iq~~al~Wi~efV~i~g~~~l~~~s~il 293 (675)
T KOG0212|consen 265 EIQLKALTWIQEFVKIPGRDLLLYLSGIL 293 (675)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhhhh
Confidence 77777788888887777777766666544
No 42
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.99 E-value=1e-06 Score=97.40 Aligned_cols=329 Identities=13% Similarity=0.052 Sum_probs=223.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhhc----------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 24 QISPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 24 ~~s~d~~~~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
+.+++.. +|+.|-..|..+.+ +.+.++.|..+|. +.+..+|.-|++.|-|.-.+ +++.+..
T Consensus 455 L~s~s~~-iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~---s~~~~iqeeAawAL~NLa~~-----~~qir~i 525 (2102)
T PLN03200 455 LGLSSEQ-QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE---TGSQKAKEDSATVLWNLCCH-----SEDIRAC 525 (2102)
T ss_pred HcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC-----cHHHHHH
Confidence 3345666 88888888876653 2466778888886 56889999999999987441 3344443
Q ss_pred H-----HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc-c
Q 013663 94 I-----KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL-D 167 (438)
Q Consensus 94 i-----~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~-~ 167 (438)
+ ...|++.|.+++..++..++.+|..+..... ++.++.+...+.++++..+..++.+++.++......- .
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 4 3467778888899999999999999986532 3456778888888888888889999988876544320 0
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHh-HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
.. ....+..++.+.+++.+++..+++.|+.++.+++...++..... ....++.+..++.+.+.++++.++.++.
T Consensus 602 ~~-----g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 602 RE-----GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred HH-----hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00 00124578999999999999999999999999988665432221 1245666667777788889999999999
Q ss_pred HHHhhCcc-cccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhc
Q 013663 247 LLIEVRPS-FLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (438)
Q Consensus 247 ~l~~~~~~-~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (438)
.+...... ....++. ..++.+++.+++.+.+++..|+..+..++........+. -...++.|++.++..
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~--~~~~I~~Lv~lLr~G------- 747 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL--AEDIILPLTRVLREG------- 747 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH--hcCcHHHHHHHHHhC-------
Confidence 99863322 1111122 477778888888899999999999999887632111111 124466777666521
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhH------HhHHHHHHHH
Q 013663 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EIL------PTLMPVIQAK 397 (438)
Q Consensus 325 ~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~------~~l~~~l~~~ 397 (438)
....|+.|..+|..++...+- ..+ -..+.-+..+
T Consensus 748 ---------------------------------------~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~ 788 (2102)
T PLN03200 748 ---------------------------------------TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL 788 (2102)
T ss_pred ---------------------------------------ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHH
Confidence 123477888999888887763 222 1122333455
Q ss_pred hccCCCCcchhhHH--HHHHHHHHhh
Q 013663 398 LSASGDEAWKDREA--AVLALGAIAE 421 (438)
Q Consensus 398 l~~~~~~~w~~r~a--al~~l~~l~~ 421 (438)
|++.+ ...... ++-+++.++.
T Consensus 789 L~~~~---~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 789 LNSTD---LDSSATSEALEALALLAR 811 (2102)
T ss_pred HhcCC---cchhhHHHHHHHHHHHHh
Confidence 66665 444444 6666666665
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.98 E-value=5.4e-09 Score=78.32 Aligned_cols=95 Identities=17% Similarity=0.314 Sum_probs=84.4
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHH
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~ 225 (438)
+.|.+++.+|..++..++..+. .+++.+++.++.++.|++..||..|++++.++.....+.+.++++.++..
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~--------~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~ 72 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDIS--------KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDA 72 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999987643 57899999999999999999999999999999999888888899999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 226 LFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 226 l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
++++..|+++.||..| +.|..+.
T Consensus 73 L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 73 LCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHcCCchhHHHHH-HHHHHHh
Confidence 9999999999998776 6666554
No 44
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.98 E-value=1e-06 Score=86.20 Aligned_cols=266 Identities=14% Similarity=0.196 Sum_probs=186.1
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC-----chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA-----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~-----~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
+.+.++.-+.++++..|+..+..+..|+...+.. .-..++..++..++.++.... .-+..++.++..+.....
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~k- 794 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVK- 794 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccc-
Confidence 3345556677888999999999999998765422 223467777777765433222 456788888888887543
Q ss_pred CCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013663 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (438)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~ 247 (438)
++++.+...++..|++.++.||..|++.+++++..+...- .+.+..+=..|.+.+....+++.-.++.++..
T Consensus 795 -------pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 795 -------PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred -------cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999887764211 11222222345566666678888888888888
Q ss_pred HHhhCc-ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhh--HHhhHHHHHHHHHhccCcChhhhhhc
Q 013663 248 LIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN--LKEFLPRLVPVLLSNMIYADDDESLV 324 (438)
Q Consensus 248 l~~~~~-~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~--~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (438)
++.... ..+.|=+.+++|-+.-.+++.++.|...++.+++++|... .+. .+.++.--+. |+..+.
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg--pE~v~aREWMRIcfe-LlelLk--------- 935 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG--PEYVSAREWMRICFE-LLELLK--------- 935 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC--cccCCHHHHHHHHHH-HHHHHH---------
Confidence 877653 3345667889999999999999999999999999999761 121 1233322111 111111
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCC
Q 013663 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGD 403 (438)
Q Consensus 325 ~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~ 403 (438)
...-.+|++|...++-++...|. .++.. +.++|..++
T Consensus 936 -------------------------------------ahkK~iRRaa~nTfG~IakaIGPqdVLat----LlnnLkvqe- 973 (1172)
T KOG0213|consen 936 -------------------------------------AHKKEIRRAAVNTFGYIAKAIGPQDVLAT----LLNNLKVQE- 973 (1172)
T ss_pred -------------------------------------HHHHHHHHHHHhhhhHHHHhcCHHHHHHH----HHhcchHHH-
Confidence 01236799999999999999987 54444 445556666
Q ss_pred CcchhhHHHHHHHHHHhhcch
Q 013663 404 EAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 404 ~~w~~r~aal~~l~~l~~~~~ 424 (438)
-+.|-++-.+++.++|.|+
T Consensus 974 --Rq~RvcTtvaIaIVaE~c~ 992 (1172)
T KOG0213|consen 974 --RQNRVCTTVAIAIVAETCG 992 (1172)
T ss_pred --HHhchhhhhhhhhhhhhcC
Confidence 6778888889999998876
No 45
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.6e-07 Score=94.99 Aligned_cols=292 Identities=15% Similarity=0.152 Sum_probs=206.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH
Q 013663 105 ADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (438)
..+.-|+.+|..++.|++..+ ....+.++|.|...=-+++..++.+--.+=..++.+-...+ +.+.++|
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v--------d~y~neI 1040 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV--------DEYLNEI 1040 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH--------HHHHHHH
Confidence 456678899999999997653 34567899999887667777777655555554444322222 3578999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHHHhh-----C
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLV---CAAFNLLIEV-----R 252 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~a---~~~l~~l~~~-----~ 252 (438)
+..++..+.+..+.||.+++-++..+++.-| +.+.+.++.+...++....|-.+.||..+ ++.+.+++-. +
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999999876 45677888888888888877667777765 4445544432 1
Q ss_pred cccccccHHHHHHHHhhh-hcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCC
Q 013663 253 PSFLEPHLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (438)
Q Consensus 253 ~~~~~~~~~~li~~~~~~-~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~ 331 (438)
+..-+..+..++|+++.. +-+.-.+||..++..+..++.+ ..+.+.|++++++|.++.....-+..+=.+
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnY------- 1191 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNY------- 1191 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHH-------
Confidence 222334566788998854 3366789999999999998876 456899999999999998876544332111
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhH------HHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCc
Q 013663 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS------AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (438)
Q Consensus 332 ~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a------~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (438)
+ ..+.. + .+ -+.-.+.|..| .+.++.+........+..++|.+.+.+.++-.
T Consensus 1192 -------l-----s~r~~---~---~e--~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg-- 1249 (1702)
T KOG0915|consen 1192 -------L-----SLRLI---N---IE--TEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG-- 1249 (1702)
T ss_pred -------H-----HHhhh---h---hH--HHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC--
Confidence 0 00000 0 00 01223445444 35667776666778888899999888877532
Q ss_pred chhhHHHHHHHHHHhhcchhhhhhcccccc
Q 013663 406 WKDREAAVLALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 406 w~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
-..|-++...+..++.-++.++.||-..++
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~~emtP~sgKll 1279 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSEMTPYSGKLL 1279 (1702)
T ss_pred CCcchhHHHHHHHHHHHhccccCcchhHHH
Confidence 667889989999999889888888766554
No 46
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.89 E-value=8.8e-06 Score=79.90 Aligned_cols=327 Identities=16% Similarity=0.170 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC-HhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS-PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~-~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~ 125 (438)
|-..+.+..+|-.-.+.++.+|+-|+-++.....- .+..- ......+-..|.+.|++..+.|--.+-.++..|+...+
T Consensus 795 pylpqi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 795 PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 33334444554433488999999999887654431 11111 22344556678888998888887777777777765432
Q ss_pred ----cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHH
Q 013663 126 ----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (438)
Q Consensus 126 ----~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al 201 (438)
...-.+++|.|.-.+++....+.+.++..++.|+..-++.+.. ...-.|--.++..|...+.++|.+|.
T Consensus 874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a-------REWMRIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA-------REWMRICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345678888888888888889999999999999988875431 12333334456666777889999999
Q ss_pred HHHHHHHcccc-hh-h---HHhHH------------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 202 GSVNQFIMLMP-SA-L---FVSMD------------------------QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 202 ~~l~~~~~~~~-~~-~---~~~~~------------------------~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
.+|+-+...+. .. + ..++. .+++++.+=-.-++..|...++++++-+.+.-
T Consensus 947 nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen 947 NTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred hhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH
Confidence 99998887763 21 1 11110 12333322223356678888899988888777
Q ss_pred cccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCC
Q 013663 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (438)
Q Consensus 253 ~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~ 332 (438)
.+.-+.|+-.+.|++-..+.|.|.--|+.|...+.-++-.. ..-.....+-.++..++.++-.+
T Consensus 1027 gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~-~g~g~eda~iHLLN~iWpNIle~--------------- 1090 (1172)
T KOG0213|consen 1027 GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV-PGTGCEDALIHLLNLIWPNILET--------------- 1090 (1172)
T ss_pred HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC-CCcCcHHHHHHHHHHhhhhhcCC---------------
Confidence 77777888899999999998888888999998887776431 01112344444555555444211
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHH
Q 013663 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412 (438)
Q Consensus 333 ~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aa 412 (438)
...+-.+...++..+...+|.. .++.++.+.|-++. -++|..-
T Consensus 1091 -------------------------------sPhviqa~~e~~eg~r~~Lg~~---~~~~Y~~QGLFHPa---rkVR~~y 1133 (1172)
T KOG0213|consen 1091 -------------------------------SPHVIQAFDEAMEGLRVALGPQ---AMLKYCLQGLFHPA---RKVRKRY 1133 (1172)
T ss_pred -------------------------------ChHHHHHHHHHHHHHHHHhchH---HHHHHHHHhccCcH---HHHHHHH
Confidence 2344455677788888888763 25667778888887 7889888
Q ss_pred HHHHHHHhhcchhhhhhccccc
Q 013663 413 VLALGAIAEGCIKGLYPHLSEV 434 (438)
Q Consensus 413 l~~l~~l~~~~~~~~~~~l~~i 434 (438)
...+.++--+-.+.+.+++|-+
T Consensus 1134 w~vyn~my~~~~dalv~~ypv~ 1155 (1172)
T KOG0213|consen 1134 WTVYNSMYHGSQDALVACYPVE 1155 (1172)
T ss_pred HHHHHhHhhcccchhhhccccC
Confidence 8888888888888888887754
No 47
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.89 E-value=4.8e-08 Score=87.09 Aligned_cols=270 Identities=15% Similarity=0.149 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CC--------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNL 79 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p--------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i 79 (438)
++...++.++..++.|.|-+ .+-+|...+.++.. +| +.++-+...+.. .+..-.++-|++.|.|.-
T Consensus 67 qq~~~elp~lt~~l~SdDie-~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~--~q~~mlqfEAaWalTNia 143 (526)
T COG5064 67 QQFYSELPQLTQQLFSDDIE-QQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE--IQRDMLQFEAAWALTNIA 143 (526)
T ss_pred HHhhhhhHHHHHHHhhhHHH-HHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh--cchhHHHHHHHHHHhhhc
Confidence 34556788888888888877 77888877776652 33 334445555543 566667777888887653
Q ss_pred H--------------------------------hhhcc-----CCHhhHHHHH-----HHhhhhhhcC--cHHHHHHHHH
Q 013663 80 R--------------------------------TAYKS-----MSPSNQQYIK-----SELLPCLGAA--DRHIRSTVGT 115 (438)
Q Consensus 80 ~--------------------------------~~w~~-----l~~~~~~~i~-----~~ll~~l~~~--~~~vr~~~a~ 115 (438)
. ..|.- =++..+.++. ..++..+.+. .-.+-+.+.+
T Consensus 144 SGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 144 SGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred cCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 1 12321 2344555554 3455666554 3466677899
Q ss_pred HHHHHHHhh-ccCchHH---HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC
Q 013663 116 IVSVVVQLG-GIAGWLE---LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (438)
Q Consensus 116 ~la~i~~~~-~~~~w~~---ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (438)
.++.+++.- |+..|.. .+|.|...+-+.++.+..-|+++++++.+.-.+.++- + .-..+.+.++.+|.+
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~a----v---ld~g~~~RLvElLs~ 296 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQA----V---LDVGIPGRLVELLSH 296 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHH----H---HhcCCcHHHHHHhcC
Confidence 999999886 6678875 5889999998999999999999999998755443210 0 113356789999999
Q ss_pred CCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhh
Q 013663 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQ 269 (438)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~ 269 (438)
++..+..-|++.+++++..-...-...++ ..++.+..++.++...+|+.+|+++..+.....+.+...+. .++|.+++
T Consensus 297 ~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 297 ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 99999999999999998765322111111 23455555677777899999999999887666555544443 67788888
Q ss_pred hhcCCChHHHhHHHHHHHHhh
Q 013663 270 VNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 270 ~~~~~~~~v~~~a~~~~~~~~ 290 (438)
.+...+..+++.|+=.++...
T Consensus 377 lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 887777788888875554443
No 48
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.89 E-value=2.2e-07 Score=82.85 Aligned_cols=183 Identities=19% Similarity=0.132 Sum_probs=128.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh-hccCCHhhHHHHH---HHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc---CchHHHH
Q 013663 61 EGKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIK---SELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELL 133 (438)
Q Consensus 61 ~~~~~~~R~~A~~~Lk~~i~~~-w~~l~~~~~~~i~---~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~---~~w~~ll 133 (438)
.+.+=..|.-|..-|++.+..+ -....+.....++ ..+...+.+....|.+.++.+++.++...+. ..-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3677888999999999998876 1123344455565 4555566677788999999999999987642 2345689
Q ss_pred HHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH-HHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF-LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 134 ~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i-l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
|.|+..+.+++..++..|..+|..+++.++. ...+ .+.+..++++.++.+|..++.++..++...+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-------------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSY-------------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H---------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCc-------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 9999999998889999999999999998772 1334 7788889999999999999999999988776
Q ss_pred ---hhhHH--hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 213 ---SALFV--SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 213 ---~~~~~--~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
..+.. .++.+.+.+...+.|+++++|..|-+++..+.+..|+..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 33322 357888999999999999999999999999988777543
No 49
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.86 E-value=8.5e-09 Score=85.30 Aligned_cols=136 Identities=21% Similarity=0.329 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccC--------CCCCCcch
Q 013663 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD--------VPGLAECP 177 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~--------~~~~~~~~ 177 (438)
++.||+++|.+++.|+.+++|..||++++.+++.+++ ++.....++.+|..+.+++....+.. ....+...
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999887 58888999999999999987521100 00111233
Q ss_pred hhhHHHHHHHhccCCC----HHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~----~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l 245 (438)
.+.++..+.+.++... .++...+++|+.+++.+++-..... ..+++.+++++.++ ..+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 4556666666665532 7889999999999999987433322 24788888888554 4688888875
No 50
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.1e-06 Score=84.15 Aligned_cols=222 Identities=15% Similarity=0.181 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHHHHHh--hhccCCHhhHHHHHHHhhhhhh-----------cCcHHHHH-------------HHHHH
Q 013663 63 KSVEIRQAAGLLLKNNLRT--AYKSMSPSNQQYIKSELLPCLG-----------AADRHIRS-------------TVGTI 116 (438)
Q Consensus 63 ~~~~~R~~A~~~Lk~~i~~--~w~~l~~~~~~~i~~~ll~~l~-----------~~~~~vr~-------------~~a~~ 116 (438)
.++.+-+++...+.+.+.+ .|+.+-|.....+.+.++.+|. +|...+|+ ++...
T Consensus 316 ls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~ 395 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDF 395 (1010)
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHH
Confidence 5788888999999988865 5988888888888888888763 23556775 45566
Q ss_pred HHHHHHhhccCchHHHHHHHHHHhc------c--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh-HHHHHHH
Q 013663 117 VSVVVQLGGIAGWLELLQALVTCLD------S--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI-FLPRLLQ 187 (438)
Q Consensus 117 la~i~~~~~~~~w~~ll~~l~~~l~------~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~-il~~l~~ 187 (438)
+-.+++.-++...|.+++++.+.+. . .++..+.||+.+++++++.+... ..+...+.. +.+.++.
T Consensus 396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~------s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK------SPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC------CchHHHHHHHHHHHhhH
Confidence 7777777678889999999988887 2 25678999999999999766542 111122333 4567888
Q ss_pred hccCCCHHHHHHHHHHHHHHHc-ccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCc---ccccccHHH
Q 013663 188 FFQSPHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP---SFLEPHLRN 262 (438)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~ 262 (438)
.++++...+|..|+..++.+.. ..++ ..++...+....+.+. |++-.||..|.-++..++.+.. ..+++|+++
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 8899999999999999998863 2221 1233455555555554 7777899999888888887765 569999999
Q ss_pred HHHHHhhhhcCCChHHHhHHH-HHHHHhhcc
Q 013663 263 LFEYMLQVNKDTDDDVALEAC-EFWHSYFEA 292 (438)
Q Consensus 263 li~~~~~~~~~~~~~v~~~a~-~~~~~~~~~ 292 (438)
+++-++...+..+-+.-...+ .++..+++.
T Consensus 548 ~mq~lL~L~ne~End~Lt~vme~iV~~fseE 578 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLTNVMEKIVCKFSEE 578 (1010)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHh
Confidence 999999887764333333343 455666654
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.82 E-value=2.2e-07 Score=82.90 Aligned_cols=193 Identities=19% Similarity=0.186 Sum_probs=134.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc-c----hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-P----SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
+..+...|.+.-.+.+++.|..|+..+.+++... + +.+...+..++..+...+.|....+.+.|+.++..++...
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555656557789999999999999998866 2 3344445555666766676666789999999999999998
Q ss_pred cccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHH-HHHHHhccCcChhhhhhccccccCC
Q 013663 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL-VPVLLSNMIYADDDESLVEAEEDES 331 (438)
Q Consensus 253 ~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l-~~~l~~~l~~~~~d~~~~~~~~~~~ 331 (438)
...|.+++..++|.++..+.+...-++..|...+..+++.- . +.+.+ ++.+...+.
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~------~-~~~~~~~~~l~~~~~---------------- 141 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC------S-YSPKILLEILSQGLK---------------- 141 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT----------------
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC------C-cHHHHHHHHHHHHHh----------------
Confidence 88899999999999999999888899999999999988751 1 22333 233322221
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhc---h-----hhHHhHHHHHHHHhccCCC
Q 013663 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG---D-----EILPTLMPVIQAKLSASGD 403 (438)
Q Consensus 332 ~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~---~-----~~~~~l~~~l~~~l~~~~~ 403 (438)
+-+..+|..+..++..+....| . ..++.+.+.+...+++++
T Consensus 142 ------------------------------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~- 190 (228)
T PF12348_consen 142 ------------------------------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDAD- 190 (228)
T ss_dssp -------------------------------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS--
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCC-
Confidence 1146889999999999999988 2 235778999999999998
Q ss_pred CcchhhHHHHHHHHHHhhcchhh
Q 013663 404 EAWKDREAAVLALGAIAEGCIKG 426 (438)
Q Consensus 404 ~~w~~r~aal~~l~~l~~~~~~~ 426 (438)
..+|++|-.+|..+...+++.
T Consensus 191 --~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 191 --PEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHH-HH
T ss_pred --HHHHHHHHHHHHHHHHHCCHh
Confidence 999999999999998887744
No 52
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.8e-06 Score=89.28 Aligned_cols=281 Identities=17% Similarity=0.172 Sum_probs=185.9
Q ss_pred HHHHHHHhhhhhh---cCcHHHHHHHHHHHHHHHHhh---ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 91 QQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 91 ~~~i~~~ll~~l~---~~~~~vr~~~a~~la~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
..+++..+.++.. ||+..|+++...+...+.... -.....+++..|...+.+..+.+|+++..+|..+...-+.
T Consensus 993 ~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred hhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh
Confidence 3455555555543 799999999988888887532 1244578999999999999999999999999999887554
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc--------hhhHHhHHHHHHHHHH--hhCCCC
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--------SALFVSMDQYLQGLFL--LSNDPS 234 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--------~~~~~~~~~ll~~l~~--~~~~~~ 234 (438)
.- +...++++...++..+.|-...||.+|-++...+....- ..-...+..+++.+.. .+ +.-
T Consensus 1073 ~~-------~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v 1144 (1702)
T KOG0915|consen 1073 DQ-------VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKV 1144 (1702)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cch
Confidence 21 113567788888888889899999887666554433221 1112334455555543 22 445
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHH-----------HhHHHHHHHH-hhccCCChhhH---
Q 013663 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDV-----------ALEACEFWHS-YFEAQLPHENL--- 299 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v-----------~~~a~~~~~~-~~~~~~~~~~~--- 299 (438)
+++|+-++.++.++++.+++.++||++.++|+++.....-++.| -..|++-... .+....+++.+
T Consensus 1145 ~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~c 1224 (1702)
T KOG0915|consen 1145 NEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKC 1224 (1702)
T ss_pred HHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHH
Confidence 78999999999999999999999999999999988765433222 2233322221 22222233222
Q ss_pred -----HhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHH
Q 013663 300 -----KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (438)
Q Consensus 300 -----~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~ 374 (438)
...+.+++|.+.+.++.+- ....|..+...
T Consensus 1225 i~~iD~~vLeelip~l~el~R~sV---------------------------------------------gl~Tkvg~A~f 1259 (1702)
T KOG0915|consen 1225 INYIDISVLEELIPRLTELVRGSV---------------------------------------------GLGTKVGCASF 1259 (1702)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccC---------------------------------------------CCCcchhHHHH
Confidence 2345556666655443110 12337789999
Q ss_pred HHHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 375 LDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
+..++..+|.+..|..--++..++..-.+-|-..|.+--.++|.++.--+
T Consensus 1260 I~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 99999999997776655555544433222236788999999999887543
No 53
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.2e-05 Score=78.25 Aligned_cols=254 Identities=17% Similarity=0.246 Sum_probs=174.7
Q ss_pred HHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 13 GFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~-d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
.+++++.+-..++.+ |+. .|-.||..|.++..+|++...+..++.. +..+-...+|+..|-+.+... ..+|-+++
T Consensus 3 sLaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~-t~lpl~qr 78 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRK-TPLPLEQR 78 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCC-CCCcHHHH
Confidence 467888888887754 788 9999999999999999999888777875 778888888998888777665 36899999
Q ss_pred HHHHHHhhhhhhc--C--cHHHHHHHHHHHHHHHHhhcc--C----chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 92 QYIKSELLPCLGA--A--DRHIRSTVGTIVSVVVQLGGI--A----GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 92 ~~i~~~ll~~l~~--~--~~~vr~~~a~~la~i~~~~~~--~----~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
-.|++.+++.+.. | .+.|-.++++.+|.|.+..|- + .+.+.+..+...++.++.++...++.+|..++.+
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 9999999999976 3 688999999999999998752 2 4678899999999988889999999999999988
Q ss_pred cccc--cccCCC------CCCcchhhhHHHHHHHhccCC------C---HHH----HHHHHHHHH-HHHccc--------
Q 013663 162 IPQV--LDSDVP------GLAECPINIFLPRLLQFFQSP------H---TSL----RKLSLGSVN-QFIMLM-------- 211 (438)
Q Consensus 162 ~~~~--~~~~~~------~~~~~~~~~il~~l~~~l~~~------~---~~v----r~~al~~l~-~~~~~~-------- 211 (438)
+... ..+..+ ++=+..+.+++..-.+.+++. + ..+ -+.+++|+. .++...
T Consensus 159 mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ 238 (1082)
T KOG1410|consen 159 MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDL 238 (1082)
T ss_pred hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccc
Confidence 7642 111000 000122334444333333321 1 112 233444442 111111
Q ss_pred -----chhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc-----ccHHHHHHHHhhh
Q 013663 212 -----PSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-----PHLRNLFEYMLQV 270 (438)
Q Consensus 212 -----~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-----~~~~~li~~~~~~ 270 (438)
|......+ .+.++.++.+...-.+..-..++.|+..+++...+.|. .|+..++.-+..+
T Consensus 239 ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 239 CTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRI 309 (1082)
T ss_pred cceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 11111111 25677788877776678889999999999987666553 2445555544443
No 54
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.73 E-value=2.3e-05 Score=75.50 Aligned_cols=323 Identities=12% Similarity=0.093 Sum_probs=206.6
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc----
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---- 125 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~---- 125 (438)
.+....+|..-.+.++++|+-|+-+......-.-.---.+..+.+-..|.+.+++..+.+--.+-.++..|.....
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3444455544348999999999987765433210011123445566678888888888887777777776665432
Q ss_pred cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHH
Q 013663 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (438)
...-.+++|.+.-.+++....+....+..++.||..-|+.+.. ...-.|--.++..+.+-+.++|..|..+++
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~-------rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV-------REWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH-------HHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 1245678888888888877778888899999999988876431 123333334566677788999999999998
Q ss_pred HHHcccc-hhh----HHhHH------------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 206 QFIMLMP-SAL----FVSMD------------------------QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 206 ~~~~~~~-~~~----~~~~~------------------------~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
-+...+. ... ..++. .+++.+.+=-..++..|...++++++-+.+.-...-
T Consensus 756 ~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s 835 (975)
T COG5181 756 CISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS 835 (975)
T ss_pred hHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH
Confidence 8777653 211 11110 123333222233566788888888887777666666
Q ss_pred cccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCC
Q 013663 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (438)
Q Consensus 257 ~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~ 336 (438)
..|+-.+.|++-..+.|.|.--|+.|...+.-++-..... ......-.++..|+.++-.+
T Consensus 836 ~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~eda~IHLlNllwpNIle~------------------- 895 (975)
T COG5181 836 LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GDEDAAIHLLNLLWPNILEP------------------- 895 (975)
T ss_pred HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHhhhhccCC-------------------
Confidence 6788888899999999999888999998888776431111 11233334455555444211
Q ss_pred CCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHH
Q 013663 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLAL 416 (438)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l 416 (438)
...+-.+..++++.++..+|.. .++.++.+.+-+|. -.+|.+-...+
T Consensus 896 ---------------------------sPhvi~~~~Eg~e~~~~~lg~g---~~m~Yv~qGLFHPs---~~VRk~ywtvy 942 (975)
T COG5181 896 ---------------------------SPHVIQSFDEGMESFATVLGSG---AMMKYVQQGLFHPS---STVRKRYWTVY 942 (975)
T ss_pred ---------------------------CcHHHHHHHHHHHHHHHHhccH---HHHHHHHHhccCch---HHHHHHHHHHH
Confidence 1333455677888888888763 25667888888887 56666555554
Q ss_pred HHHhhcchhhhhhccc
Q 013663 417 GAIAEGCIKGLYPHLS 432 (438)
Q Consensus 417 ~~l~~~~~~~~~~~l~ 432 (438)
..+----.+.+.|++|
T Consensus 943 n~myv~~~damvp~yp 958 (975)
T COG5181 943 NIMYVFDSDAMVPCYP 958 (975)
T ss_pred hhhhhccccccccccc
Confidence 4433334466777665
No 55
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4.3e-06 Score=81.75 Aligned_cols=189 Identities=13% Similarity=0.221 Sum_probs=133.5
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
++++..-.+-.-++.+|+...+.+|+.+..++-.++-.+ |+.....||.|.+.+.++||.+..+|..++..+++.-|..
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 466777778888899999999999999999999888764 5566678899999999999999999999999998887763
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCC-------------------CHHH-------------HHHHHHHHHHHHccc--
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSP-------------------HTSL-------------RKLSLGSVNQFIMLM-- 211 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~-------------------~~~v-------------r~~al~~l~~~~~~~-- 211 (438)
+ -.+.|.|++.|.+. .+.+ +..|...++.++..+
T Consensus 216 y------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 216 Y------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred c------------ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 1 12334444444332 1111 122333333333321
Q ss_pred -------chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHH
Q 013663 212 -------PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (438)
Q Consensus 212 -------~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~ 284 (438)
|+. ...+.--++.|-.++.|.|+.+|..++-++..++..+|+.+. .--.++++++.|.|+.||..|++
T Consensus 284 ~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq----a~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 284 VSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ----AHKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred ehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH----HhHHHHHHHhccCCchhHHHHHH
Confidence 111 111112234455567788899999999999999999987653 34456788899999999999999
Q ss_pred HHHHhhcc
Q 013663 285 FWHSYFEA 292 (438)
Q Consensus 285 ~~~~~~~~ 292 (438)
++.-+...
T Consensus 359 Ll~gmVsk 366 (877)
T KOG1059|consen 359 LLYGMVSK 366 (877)
T ss_pred HHHHHhhh
Confidence 98887665
No 56
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.67 E-value=4.2e-06 Score=81.37 Aligned_cols=204 Identities=21% Similarity=0.267 Sum_probs=151.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhh-hcCcHHHHHHHHHHHHHHHHhh---ccCchHHHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-GAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALV 137 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l-~~~~~~vr~~~a~~la~i~~~~---~~~~w~~ll~~l~ 137 (438)
+.++..|..++..+--.++| |.. .+....+.+.+...+ .......|..+-.+++-|++.. +...-.+++..++
T Consensus 201 ~~~~~~~~~~~~~la~LvNK-~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 201 SEDEFSRLAALQLLASLVNK-WPD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred CCChHHHHHHHHHHHHHHcC-CCC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45578888888888777777 543 223444444444444 3345555555556665566553 2234457788888
Q ss_pred HHhccCChhhHhHHHHHHHHHHhccccccccCCC---CCC--cchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 138 TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP---GLA--ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 138 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~---~~~--~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
+.+.+ +.....+...++-++.+.+..+..... .++ ++....++|.+++.+...+...|...+.++..++..+|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 88876 567788889999998887665442211 111 45678889999999999888899999999999999999
Q ss_pred hh-hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 213 SA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 213 ~~-~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
.. +.+.++.+++.+.+.+.-++.+++..+++++..++...++.+.+|+..+++.+++.
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 54 46788999999999998888899999999999999999999999999999988764
No 57
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.0003 Score=73.16 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=176.6
Q ss_pred hhccCCHhhHHHHHHHhhhhhhcCcHHHHH----HHHHHHHHHHHhhccCchHHHHHHHHHHhcc-CChhhHhHHHHHHH
Q 013663 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRS----TVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALS 156 (438)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~----~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~ 156 (438)
+...-+.+....+++.+-....+.+..++. ..-..+..++.......-..++ .+.....+ .+..++.-++.+|.
T Consensus 601 ~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~ 679 (1176)
T KOG1248|consen 601 YFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLE 679 (1176)
T ss_pred HhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHH
Confidence 334445666666666665555544444433 2333344444443344555565 55555544 36788999999999
Q ss_pred HHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHH
Q 013663 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 236 (438)
.++..-+.. .+.+.++..+...+...+++.+...+..+++|+..+++..+..+...++..++-+.-.+++.+..
T Consensus 680 ~l~~~~s~~------~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~ 753 (1176)
T KOG1248|consen 680 ELSSSPSGE------GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVK 753 (1176)
T ss_pred HHhcCCchh------hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHH
Confidence 998872111 12245678888889999999999999999999999999988555555555554333333777788
Q ss_pred HHHHHHHHHHHHHh--hCcccc----cccHHHHHHHHhhhhcCCChHHHhHHHH--HHHHhhccCCChhhH-HhhHHHHH
Q 013663 237 VRKLVCAAFNLLIE--VRPSFL----EPHLRNLFEYMLQVNKDTDDDVALEACE--FWHSYFEAQLPHENL-KEFLPRLV 307 (438)
Q Consensus 237 ~~~~a~~~l~~l~~--~~~~~~----~~~~~~li~~~~~~~~~~~~~v~~~a~~--~~~~~~~~~~~~~~~-~~~l~~l~ 307 (438)
.|+.+++||..+.. .+-+.- ...+..+++.+...+- .+..+..|.. .+..+... ..+.+ .+++++++
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~--gd~~~~~as~Ivai~~il~e--~~~~ld~~~l~~li 829 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV--GDSTRVVASDIVAITHILQE--FKNILDDETLEKLI 829 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHH
Confidence 99999999988883 221111 1123344444444432 2233333332 22222211 11111 34555555
Q ss_pred HHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhH
Q 013663 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (438)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (438)
..+--++.. ..-.++.+|...+..++..+++.++
T Consensus 830 ~~V~~~L~s----------------------------------------------~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 830 SMVCLYLAS----------------------------------------------NSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHhc----------------------------------------------CCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 444333331 1246789999999999999999554
Q ss_pred ----HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhccc
Q 013663 388 ----PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLS 432 (438)
Q Consensus 388 ----~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~ 432 (438)
+.++|.+..+..+.. -+.|.+.-..|--+.+.++ +.+.+++|
T Consensus 864 ~~~~~~LL~sll~ls~d~k---~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSHDHK---IKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred hhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 456666666555544 6788888888888888776 55666666
No 58
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.54 E-value=6.8e-07 Score=67.01 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCC
Q 013663 196 LRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD 275 (438)
Q Consensus 196 vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 275 (438)
.|..++-++..+...++....++++.|++.++..+.|+++.+|..||+++..+++.....+-+|++++++.+.+...|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 37788888988888888778889999999999999999999999999999999998888888899999999999999999
Q ss_pred hHHHhHHHHHHH
Q 013663 276 DDVALEACEFWH 287 (438)
Q Consensus 276 ~~v~~~a~~~~~ 287 (438)
+.||..| +++.
T Consensus 82 ~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 82 ENVRSAA-ELLD 92 (97)
T ss_pred hhHHHHH-HHHH
Confidence 9999776 4443
No 59
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3e-05 Score=79.40 Aligned_cols=265 Identities=16% Similarity=0.125 Sum_probs=178.3
Q ss_pred hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccc
Q 013663 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
+..+.+...|++.+++.+..||-.+|..++.++...+..--.+.+..++..+.-. ++..-++|+.+|..+...
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r------ 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR------ 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc------
Confidence 5677888899999999999999999999999999877333344555555544332 355667999999888653
Q ss_pred cCCCCCC-cchhhhHHHHHHHhccC--------CCHHHHHHHHHHHHHHHccc-chhhHHhHHHHHHHH-HHhhCCCCHH
Q 013663 168 SDVPGLA-ECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGL-FLLSNDPSAE 236 (438)
Q Consensus 168 ~~~~~~~-~~~~~~il~~l~~~l~~--------~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~ll~~l-~~~~~~~~~~ 236 (438)
|++ -..+..++|.+++.+.= ....||.+|+-...++.... |+.+.+.+..+...+ +..+.|++-.
T Consensus 411 ----GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 411 ----GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVN 486 (1133)
T ss_pred ----CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhh
Confidence 111 12467888888887752 36779999999988888755 566777777777654 4567789999
Q ss_pred HHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhc-cC
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN-MI 315 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-l~ 315 (438)
.|++|..+|.+.+.+.+.+ ||--.++.. ...-.-..|..+..-+..... ..+.|...++..++++ ++
T Consensus 487 cRRAAsAAlqE~VGR~~n~--p~Gi~Lis~----~dy~sV~~rsNcy~~l~~~ia------~~~~y~~~~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNF--PHGISLIST----IDYFSVTNRSNCYLDLCVSIA------EFSGYREPVFNHLLTKKVC 554 (1133)
T ss_pred HhHHHHHHHHHHhccCCCC--CCchhhhhh----cchhhhhhhhhHHHHHhHHHH------hhhhHHHHHHHHHHhcccc
Confidence 9999999999999875543 222222211 111122234444433333221 1345666666666543 32
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHH
Q 013663 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQ 395 (438)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 395 (438)
-| .-.+|.-|..+|..++..-++......+|-+.
T Consensus 555 -------HW---------------------------------------d~~irelaa~aL~~Ls~~~pk~~a~~~L~~ll 588 (1133)
T KOG1943|consen 555 -------HW---------------------------------------DVKIRELAAYALHKLSLTEPKYLADYVLPPLL 588 (1133)
T ss_pred -------cc---------------------------------------cHHHHHHHHHHHHHHHHhhHHhhcccchhhhh
Confidence 12 12567889999999999988876655555544
Q ss_pred HHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 396 AKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 396 ~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
....+.+ ...|++...+.|.++-++.
T Consensus 589 d~~ls~~---~~~r~g~~la~~ev~~~~~ 614 (1133)
T KOG1943|consen 589 DSTLSKD---ASMRHGVFLAAGEVIGALR 614 (1133)
T ss_pred hhhcCCC---hHHhhhhHHHHHHHHHHhh
Confidence 4444556 7899999999999987664
No 60
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.53 E-value=1.8e-05 Score=81.75 Aligned_cols=255 Identities=13% Similarity=0.158 Sum_probs=178.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQF-------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~-------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
+.+.|+++..++ .+.+|.+-|+.+... ....+++..++. +....+|-.|..+|...+... ..+++.
T Consensus 427 lts~IR~lk~~~---tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~---Ds~a~Vra~Al~Tlt~~L~~V-r~~~~~ 499 (1431)
T KOG1240|consen 427 LTSCIRALKTIQ---TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLM---DSEADVRATALETLTELLALV-RDIPPS 499 (1431)
T ss_pred HHHHHHhhhcch---hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhc---CchHHHHHHHHHHHHHHHhhc-cCCCcc
Confidence 444445444444 568888888888751 234566767665 689999999999998887643 234444
Q ss_pred hH----HHHHHHhhhhhhc-CcHHHHHHHHHHHHHHHHhh------------------ccC----------chHHHHHHH
Q 013663 90 NQ----QYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG------------------GIA----------GWLELLQAL 136 (438)
Q Consensus 90 ~~----~~i~~~ll~~l~~-~~~~vr~~~a~~la~i~~~~------------------~~~----------~w~~ll~~l 136 (438)
.. ++|...|-.++.+ ....||-..|.+|+.+|+.- +.+ .-..|...+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 33 4555555555556 57889999999999998631 000 112233332
Q ss_pred H----HHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 137 V----TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 137 ~----~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
. ..+.++++.+|+.-+..+..+|.-++.+ +.-+.+++.+...|+|.++.+|.+-++.+..+.-++.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~----------ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE----------KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc----------ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 2 2334455688888888888887766653 2346689999999999999999888887776544443
Q ss_pred h-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 213 S-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 213 ~-~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
. ...+ -+++.+.+.+.|+++-|-..|+.++..+++..- .=++++.++++.++-.+-+++..||..++.++..+++
T Consensus 650 ~rs~se---yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 650 WRSVSE---YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeeHHH---HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 1 1222 366778888999999999999999999997632 2245677888888877888999999999999999877
Q ss_pred c
Q 013663 292 A 292 (438)
Q Consensus 292 ~ 292 (438)
.
T Consensus 726 ~ 726 (1431)
T KOG1240|consen 726 Q 726 (1431)
T ss_pred h
Confidence 6
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.52 E-value=2.5e-05 Score=76.06 Aligned_cols=208 Identities=22% Similarity=0.212 Sum_probs=154.2
Q ss_pred HHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccccccccC
Q 013663 93 YIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSD 169 (438)
Q Consensus 93 ~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~-~~~w~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (438)
.+.+.++.... ..++..|..++.+++.++.+.+ .+...+++..+...+ .+.+...+..++.++.-+.+.+--.-
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~--- 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG--- 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC---
Confidence 34455555543 4579999999999999997753 345777888777777 44556677778888777777654321
Q ss_pred CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-------------HHhHHHHHHHHHHhhCCCCHH
Q 013663 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-------------FVSMDQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-------------~~~~~~ll~~l~~~~~~~~~~ 236 (438)
.+....++..+++.+.+ +++...|.++++-++...++.+ ...+..+++.+.+.....+..
T Consensus 266 -----~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 266 -----HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred -----CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 13457788888888887 6778888888888776643210 123345666666655555555
Q ss_pred HHHHHHHHHHHHHhhCcc-cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHh
Q 013663 237 VRKLVCAAFNLLIEVRPS-FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 312 (438)
.|...+.+|..++++.|+ .+.++++.++|++++.+.-++.+++..+++.+..+.+. ..+.+.++++.++|.+++
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~--~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE--APELISEHLSSLIPRLLK 413 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHh
Confidence 888889999999988774 57788999999999999888899999999999998876 357788899999998875
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00045 Score=68.95 Aligned_cols=195 Identities=14% Similarity=0.130 Sum_probs=131.8
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
.++|-...+-..+-+.+...++.||++++.|...+.+.. |+.-..+++...+.+.+.+..+..+++..+..+|+..++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 467767777778888888999999999999999998875 3445567777777788888888899999999999987765
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccC---------------CCHHHHHHHHHHHHHHHcccchhhHHhHHH---------
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ--------- 221 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~---------------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~--------- 221 (438)
++ +...+.+.|+..+.+ +++-++...++.|+-+.+.-++. .+.|..
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da-Sd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA-SDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHHhcc
Confidence 42 234455555444432 36777777887776555443221 122222
Q ss_pred ----------HHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCcccccccH------------HHHH----HHHhhhhcCC
Q 013663 222 ----------YLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHL------------RNLF----EYMLQVNKDT 274 (438)
Q Consensus 222 ----------ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~------------~~li----~~~~~~~~~~ 274 (438)
+.+.+..++. .++..+|..|..+++++......-++ |+ ++.+ ..++.|++|.
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir-YvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp 362 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR-YVALNMLLRVVQQDPTAVQRHRSTILECLKDP 362 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee-eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC
Confidence 2233322222 35678899999999999865432221 11 1222 2367889999
Q ss_pred ChHHHhHHHHHHHHhhcc
Q 013663 275 DDDVALEACEFWHSYFEA 292 (438)
Q Consensus 275 ~~~v~~~a~~~~~~~~~~ 292 (438)
|..++..|+|+...+...
T Consensus 363 D~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 363 DVSIKRRALELSYALVNE 380 (866)
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 999999999999888764
No 63
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.43 E-value=1.3e-05 Score=77.23 Aligned_cols=269 Identities=12% Similarity=0.171 Sum_probs=178.7
Q ss_pred HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCc-----hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-----WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~-----w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
++-..++..+.++....|+..+.++..++...+... -..++..++..++.++... ...+.+++.+.......
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r-- 597 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFR-- 597 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhc--
Confidence 344567777788888889999999888887654322 2336666666666543221 12334444444333332
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
..+++..++..+++.+++..+.||..|++..++++..+..-- .+.++.+=..|.+-+....+++.-.++.+++
T Consensus 598 ------~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 598 ------GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred ------cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 146889999999999999999999999999999887664110 1223333344556666667888888888888
Q ss_pred HHHhhC-cccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhcc
Q 013663 247 LLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (438)
Q Consensus 247 ~l~~~~-~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~ 325 (438)
.+.+.+ ...+.|-+.+|+|-+.-.+++.+..|....+.+++++|......--.+.++.--+. |+..+. .|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe-Lvd~Lk-------s~- 742 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFE-LVDSLK-------SW- 742 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHH-------Hh-
Confidence 887654 34466667789999888899999999999999999998762111011233322111 111111 11
Q ss_pred ccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCCC
Q 013663 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDE 404 (438)
Q Consensus 326 ~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~ 404 (438)
.-++|+.|...++-++.+.|. .++.. +.+++..++
T Consensus 743 --------------------------------------nKeiRR~A~~tfG~Is~aiGPqdvL~~----LlnnLkvqe-- 778 (975)
T COG5181 743 --------------------------------------NKEIRRNATETFGCISRAIGPQDVLDI----LLNNLKVQE-- 778 (975)
T ss_pred --------------------------------------hHHHHHhhhhhhhhHHhhcCHHHHHHH----HHhcchHHH--
Confidence 236789999999999999987 44444 445556666
Q ss_pred cchhhHHHHHHHHHHhhcch
Q 013663 405 AWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 405 ~w~~r~aal~~l~~l~~~~~ 424 (438)
-+.|-++-.+++.+++.|+
T Consensus 779 -Rq~RvctsvaI~iVae~cg 797 (975)
T COG5181 779 -RQQRVCTSVAISIVAEYCG 797 (975)
T ss_pred -HHhhhhhhhhhhhhHhhcC
Confidence 6788888889999998776
No 64
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00035 Score=69.56 Aligned_cols=179 Identities=16% Similarity=0.241 Sum_probs=108.0
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC---CC---
Q 013663 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG---LA--- 174 (438)
Q Consensus 101 ~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~---~~--- 174 (438)
+..++.+.||+.+|++|-++...++ ++..++...+-..+.+.++.+.-.|+.++..+|-+--+.+...++. ++
T Consensus 151 ~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dv 229 (968)
T KOG1060|consen 151 AVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV 229 (968)
T ss_pred HhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch
Confidence 3447899999999999999987654 4455888888888888888888888888877764433322211110 00
Q ss_pred ----------------------------------------------------cchhhhHHHHHHHhccCCCHHHHHHHHH
Q 013663 175 ----------------------------------------------------ECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (438)
Q Consensus 175 ----------------------------------------------------~~~~~~il~~l~~~l~~~~~~vr~~al~ 202 (438)
+..+..++.....++.+.++.|-.++++
T Consensus 230 deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aq 309 (968)
T KOG1060|consen 230 DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQ 309 (968)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHh
Confidence 0111112222222223333333333333
Q ss_pred HHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHH
Q 013663 203 SVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEA 282 (438)
Q Consensus 203 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a 282 (438)
.+.-++ |.. .+..+...|..++.. ...++.-.+..+..++...|..|.||++.++ +.......++..-
T Consensus 310 l~y~lA---P~~---~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf-----v~ssDp~~vk~lK 377 (968)
T KOG1060|consen 310 LFYHLA---PKN---QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFF-----VRSSDPTQVKILK 377 (968)
T ss_pred HHHhhC---CHH---HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceE-----eecCCHHHHHHHH
Confidence 333222 211 123455666666653 3567888889999999999999999988742 2233345667777
Q ss_pred HHHHHHhhcc
Q 013663 283 CEFWHSYFEA 292 (438)
Q Consensus 283 ~~~~~~~~~~ 292 (438)
++.++.++..
T Consensus 378 leiLs~La~e 387 (968)
T KOG1060|consen 378 LEILSNLANE 387 (968)
T ss_pred HHHHHHHhhh
Confidence 8888888764
No 65
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.37 E-value=1.4e-05 Score=67.98 Aligned_cols=133 Identities=18% Similarity=0.332 Sum_probs=102.0
Q ss_pred ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHH
Q 013663 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (438)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll 223 (438)
++.+|..++.+++.++...+.. ++..+|.+...|.|+++.||..|+.++..++..- +.+.-..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhh
Confidence 4678999999999999988864 5778899999999999999999999999987642 122223454
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhh-CcccccccHHHHHHHHhhhhc-----CCChHHHhHHHHHHHHhhc
Q 013663 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 224 ~~l~~~~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~li~~~~~~~~-----~~~~~v~~~a~~~~~~~~~ 291 (438)
..+...+.|+++++|..|..+|.++... .|..+..++++++..+-...+ ..+.+-+...+.|+.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 5566667899999999999999999987 677776666666655544432 2456677788888877765
No 66
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=4.4e-05 Score=77.79 Aligned_cols=261 Identities=15% Similarity=0.068 Sum_probs=177.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
...+...+......+-. +...+-.++..+.. .|++...+...+.+- ......+|.-+...++..... ++.+
T Consensus 119 r~~lipf~~e~~~~~de-v~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~----~~~~ 193 (759)
T KOG0211|consen 119 RLELIPFLTEAEDDEDE-VLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG----LPKE 193 (759)
T ss_pred hhhhhhHHHHhccchhH-HHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh----cChH
Confidence 44566666666633334 78888888777764 455544444332211 245667788888888776654 3444
Q ss_pred hHHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 90 NQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
........++..+... ...-|..+|.+++..+....+ .--.++.|...+.+++..+.+|..+..-++.+...++...
T Consensus 194 ~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~- 272 (759)
T KOG0211|consen 194 KLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI- 272 (759)
T ss_pred HHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH-
Confidence 3322223333333322 233456667777776655442 2346788888888888899999999999999888887642
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~ 247 (438)
....++|.+.+..+|....||.+|..++.++..++.... +....+.+.+++..+|+++.++....+.+..
T Consensus 273 ---------~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 273 ---------VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSE 342 (759)
T ss_pred ---------HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhh
Confidence 357788999999999999999999999999998876432 4455677888888899999999998888888
Q ss_pred HHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 248 l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
+...... ...-...++.....+++...++|.....-...++..
T Consensus 343 L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 343 LSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred HHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 8876554 223346677777888888888887666544555443
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.36 E-value=4.7e-05 Score=78.80 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=186.1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh-hHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh---c
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS-NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---G 125 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~-~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~---~ 125 (438)
+.++...+.+ =...+.|..|..+|... .++ ++.| ....|...++.++.++...||-.+-..|..+...- +
T Consensus 424 vs~lts~IR~--lk~~~tK~~ALeLl~~l-S~~---i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 424 VSVLTSCIRA--LKTIQTKLAALELLQEL-STY---IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHHh--hhcchhHHHHHHHHHHH-hhh---cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 3444444443 34566666666666543 322 4545 45688899999999999999998888888776542 2
Q ss_pred ---cCchHH-HHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccc---------------cC-CC-CCCcchh----h
Q 013663 126 ---IAGWLE-LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLD---------------SD-VP-GLAECPI----N 179 (438)
Q Consensus 126 ---~~~w~~-ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~---------------~~-~~-~~~~~~~----~ 179 (438)
.+-+|+ ++|.|...+.+ ....+|.....+|..+++....++. ++ .+ +..+... .
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 245787 78999988887 4556777777777777664332210 10 00 0111222 2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccccc
Q 013663 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (438)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 259 (438)
.+-..+..++.|+++-||.+-++.+..++.+..+. +.=.-|+..|+.+++|.|+.+|..-++.+..++-..+.. ..
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~ 653 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SV 653 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eH
Confidence 23345667788889999999888888777665321 011246788888999999999988888776554322221 01
Q ss_pred HHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCC
Q 013663 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (438)
Q Consensus 260 ~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i 339 (438)
-+-++|++.+.+.|.++-|...|+..+..+++..... ++++.+++......++.+
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~---K~~v~~i~~~v~PlL~hP---------------------- 708 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR---KPAVKDILQDVLPLLCHP---------------------- 708 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc---hHHHHHHHHhhhhheeCc----------------------
Confidence 2468899999999999999999999999998863211 344444444444444421
Q ss_pred CCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-----hhHHhHHHHHHH
Q 013663 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQA 396 (438)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~ 396 (438)
+.=+|+++...+-.++..+++ .+.|.+-|++..
T Consensus 709 ------------------------N~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~ 746 (1431)
T KOG1240|consen 709 ------------------------NLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLER 746 (1431)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhc
Confidence 123588899999999988877 344555555543
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.35 E-value=5.8e-05 Score=64.26 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH
Q 013663 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (438)
++.||..+..+++.++... ++.-...+|.+..+++++++.+|..|+.+|..+...-.- +.-..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhHHH
Confidence 4789999999999998765 344456788999999999999999999999998764222 1224566778
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHcc-cchhhHHhHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHh
Q 013663 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~~~a~~~l~~l~~ 250 (438)
+.++.|++++||..|..++..+... .|..+...++.++..+-...++ .+.+-|...++.+...+.
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 8899999999999999999998876 5666666666666655443332 234566677777666665
No 69
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.31 E-value=5e-05 Score=71.19 Aligned_cols=203 Identities=11% Similarity=0.122 Sum_probs=132.3
Q ss_pred CCCCCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC--cHHH--------HHHHHHhhccCCCHHHHHHHHHH
Q 013663 6 AWQPQEQ-GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP--DFNN--------YLAFILARAEGKSVEIRQAAGLL 74 (438)
Q Consensus 6 ~~~~~~~-~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p--~~~~--------~l~~il~~~~~~~~~~R~~A~~~ 74 (438)
.|.|++. ..+.+.+.|.++.+......|+.|-..|-.+.... +.|. .+..+|.. +.+..+|.+|...
T Consensus 276 ~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d--~~~~~~k~laLrv 353 (516)
T KOG2956|consen 276 QLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD--SEDEIIKKLALRV 353 (516)
T ss_pred hCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc--chhhHHHHHHHHH
Confidence 3554443 33456666776666533338999999887765321 2222 34445553 6899999999999
Q ss_pred HHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHH-HHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHH
Q 013663 75 LKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTI-VSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMD 153 (438)
Q Consensus 75 Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~-la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~ 153 (438)
|+...+..=..+-+.. +.....+|++-.+..+.|-+.+++. +..++.++|...-..+-|.+.. .+...-..++.
T Consensus 354 L~~ml~~Q~~~l~Dst-E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iK 428 (516)
T KOG2956|consen 354 LREMLTNQPARLFDST-EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIK 428 (516)
T ss_pred HHHHHHhchHhhhchH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHH
Confidence 9887765433332222 2233556677677766666666655 5555566554444444444443 33344456677
Q ss_pred HHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc-hhhHHhHHHH
Q 013663 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQY 222 (438)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~l 222 (438)
++..+++.+..+- +...++.++|.+++..++++..||+.|+-||..++..+. +.+.|++..+
T Consensus 429 m~Tkl~e~l~~Ee-------L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 429 MLTKLFERLSAEE-------LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHHHhhcCHHH-------HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 8999999887641 124578999999999999999999999999999998877 6677776644
No 70
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0018 Score=67.65 Aligned_cols=204 Identities=15% Similarity=0.146 Sum_probs=136.8
Q ss_pred hhhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHcccc--hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 177 PINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 177 ~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
.+..++ .+...+ ++.+..+++.+.+.|..+...-+ .....++..+.+.+...+++.....+...+.||..+.+.++
T Consensus 651 ~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~ 729 (1176)
T KOG1248|consen 651 QVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS 729 (1176)
T ss_pred hHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 345555 333333 44588999999999999888722 12344566777888777777777789999999999999888
Q ss_pred ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc--c---CC---ChhhHHhhHHHHHHHHHhccCcChhhhhhcc
Q 013663 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE--A---QL---PHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (438)
Q Consensus 254 ~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~--~---~~---~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~ 325 (438)
..+...++..++=++-..++.+...|..|+.++..++. . .. ....+.+|+..|.+. +.
T Consensus 730 ~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag----l~---------- 795 (1176)
T KOG1248|consen 730 AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG----LV---------- 795 (1176)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh----hc----------
Confidence 55555566666544444488899999999998888772 1 00 011233343332222 11
Q ss_pred ccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHH------HHHHHHhhhchhhHHhHHHHHHHHhc
Q 013663 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA------ALDVLSNVFGDEILPTLMPVIQAKLS 399 (438)
Q Consensus 326 ~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~------~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (438)
. .+.|..|.+ ++......+++.+++.+++.+...+.
T Consensus 796 -------------------------------g-------d~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~ 837 (1176)
T KOG1248|consen 796 -------------------------------G-------DSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA 837 (1176)
T ss_pred -------------------------------c-------cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 0 122333443 22222223344788999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHhhcchhh-hhhccccccc
Q 013663 400 ASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEVIF 436 (438)
Q Consensus 400 ~~~~~~w~~r~aal~~l~~l~~~~~~~-~~~~l~~i~~ 436 (438)
+.. ..++.||+-.+..++.+.++. +.+|+|+|++
T Consensus 838 s~s---reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 838 SNS---REIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred cCC---HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 988 899999999999999998865 5788887764
No 71
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00015 Score=65.97 Aligned_cols=277 Identities=17% Similarity=0.126 Sum_probs=169.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcC---------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 013663 18 CRLLEQQISPSSTADKSQIWQQLQQYSQF---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (438)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~~---------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~ 88 (438)
.-++.++.+++.. +|..|-..+.++.+. .+....+.. |. .+.+..+|..|.-.|-+.- + +.
T Consensus 129 ~~Li~qmmtd~ve-vqcnaVgCitnLaT~d~nk~kiA~sGaL~pltr-La--kskdirvqrnatgaLlnmT-h-----s~ 198 (550)
T KOG4224|consen 129 DLLILQMMTDGVE-VQCNAVGCITNLATFDSNKVKIARSGALEPLTR-LA--KSKDIRVQRNATGALLNMT-H-----SR 198 (550)
T ss_pred HHHHHHhcCCCcE-EEeeehhhhhhhhccccchhhhhhccchhhhHh-hc--ccchhhHHHHHHHHHHHhh-h-----hh
Confidence 3467777788888 899998888876642 222333444 43 3788889988887776542 1 22
Q ss_pred hhHHHHH-----HHhhhhhhcCcHHHHHHHHHHHHHHHHhh-----ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 89 SNQQYIK-----SELLPCLGAADRHIRSTVGTIVSVVVQLG-----GIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 89 ~~~~~i~-----~~ll~~l~~~~~~vr~~~a~~la~i~~~~-----~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
|.+..+. ..|.+++...+..++...+.+|+.|+... ..+.-|.++|.|++.+.++++.++-.|-.+|+.+
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh
Confidence 3333332 45667777889999999999999998543 2345578999999999999998888888888877
Q ss_pred HhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCC-CHH
Q 013663 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDP-SAE 236 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~-~~~ 236 (438)
...-..+.. -.-..-+|.++++++++....-.+.+-|+.++.-. |-.-.... ..++..+..++.-. +++
T Consensus 279 asdt~Yq~e--------iv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEe 349 (550)
T KOG4224|consen 279 ASDTEYQRE--------IVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEE 349 (550)
T ss_pred cccchhhhH--------HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchh
Confidence 654433211 11234578999999998888777888888665322 21000000 12333344444433 466
Q ss_pred HHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccC
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
.+-.|..+|..++..+....+.+.. .-+|.+...+.|..-+++...--++..++-....+..+.. ..++|+++.|..
T Consensus 350 iqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld--~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 350 IQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD--SGIIPILIPWTG 427 (550)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh--cCCcceeecccC
Confidence 8889999999998654433222222 3455555555555556654444444444433222222111 135566666654
No 72
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.22 E-value=0.00012 Score=68.79 Aligned_cols=210 Identities=13% Similarity=0.116 Sum_probs=140.3
Q ss_pred hhccCCHhhHHHHHHHhhhhhhcCc-HHHHHHHHHHHHHHHHhh---ccCchHHHHHHHHHHhcc-CChhhHhHHHHHHH
Q 013663 82 AYKSMSPSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDS-NDINHMEGAMDALS 156 (438)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~a~~la~i~~~~---~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~ 156 (438)
+|...+-+...++++.+.+.=+++. ..-..+.+++..-++... |.+.+.+++-.+++.+.+ .+...+..|+++|+
T Consensus 276 ~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~ 355 (516)
T KOG2956|consen 276 QLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLR 355 (516)
T ss_pred hCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 4555555666777766655555533 333444455555555442 334455777778888887 67889999999999
Q ss_pred HHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHH-HHHHHHcccchhhHHhHHHHHHHHHHhhCCCCH
Q 013663 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG-SVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (438)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~-~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 235 (438)
.+|+.-+..+. ......+..+++.-.|...+|-..|.+ |+..+..+.|..-.. .+.+.+ ...|.
T Consensus 356 ~ml~~Q~~~l~--------DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~---~i~~~I----lt~D~ 420 (516)
T KOG2956|consen 356 EMLTNQPARLF--------DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV---NISPLI----LTADE 420 (516)
T ss_pred HHHHhchHhhh--------chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH---HHhhHH----hcCcc
Confidence 99998887653 245666777888888887776555555 555555666533222 222222 22445
Q ss_pred HHHHHHHHHHHHHHhhCc-ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHH
Q 013663 236 EVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (438)
Q Consensus 236 ~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~ 307 (438)
.....+++++.++++... +.+.+.++.+.|++++...+.+-.||+.|+-++..+... ...+.+.||+.++-
T Consensus 421 ~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~-vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 421 PRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR-VGMEEMEPHLEQLT 492 (516)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH-HhHHhhhhHhhhcc
Confidence 567788889999997654 556678899999999999999999999999887776543 12245677776643
No 73
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.18 E-value=2.4e-05 Score=78.81 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
+.++.|.+.+.+.+.+...+...+.+|..+..++|... +.+.++.++|.+++++.-++..||..+++++..++
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~v-------llp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQV-------LLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHh-------hccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 34778889988887777889999999999999999742 23678999999999999999999999999999888
Q ss_pred cccchhhHHhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHhhCc-ccccccHHHHHHHHhhhhcCCChHHHhHHHH
Q 013663 209 MLMPSALFVSMDQYLQGLFLLSNDPS---AEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (438)
Q Consensus 209 ~~~~~~~~~~~~~ll~~l~~~~~~~~---~~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~ 284 (438)
...+.-...++..+++.++.+..+++ .-+|..|++|+..+.+.-| ..+-+|-+.++..+..++.|+-.-||..|..
T Consensus 938 ~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 938 TESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 76655555677788999988877655 5789999999999998544 5677888899999999999988899999986
Q ss_pred H
Q 013663 285 F 285 (438)
Q Consensus 285 ~ 285 (438)
.
T Consensus 1018 t 1018 (1030)
T KOG1967|consen 1018 T 1018 (1030)
T ss_pred H
Confidence 4
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.0064 Score=58.87 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred hhhhhhHHHHHHHHHhhhchhhHHh-HHHHHHHHhccCCCCcchhhHHHHHHHHHHh
Q 013663 365 WNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (438)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~ 420 (438)
.-+|.+|.++|...+-...+.+.|. +...+..++++.| -.+|+-|-+++-.+-
T Consensus 501 ~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~D---deVRdrAsf~l~~~~ 554 (898)
T COG5240 501 NIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQD---DEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhccc---HHHHHHHHHHHHhhh
Confidence 4679999999999998888877655 5556788998887 578888888877665
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.17 E-value=1.5e-05 Score=62.91 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
++++.+.+.+.++++..|..++.++..++...+..... ..-..+++.+.+.++++++.++..|+.+++++...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-------~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA-------VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHH-------HHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 36788888888888999999999999999875543210 11237889999999999999999999999999886
Q ss_pred cchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 211 MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 211 ~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
.+........ .+++.+.+.+.+.+..++..++.+|..++
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 5432222222 36777777788888999999999998775
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00076 Score=67.31 Aligned_cols=126 Identities=23% Similarity=0.242 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHH
Q 013663 32 DKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHI 109 (438)
Q Consensus 32 ~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~v 109 (438)
..|-....+-.+.+ .|+-.......+..+ ++.++-+|.+|...+... --+...+++...+.+++.+.++.+
T Consensus 65 lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yv 137 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYV 137 (734)
T ss_pred HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhH
Confidence 44444444444433 444322222222222 455566666555443211 023455677888999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 110 RSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 110 r~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
|+.++.+++.+....+. ..-..+++.|...+.+.++.+...|+.+|..|.+.-+.
T Consensus 138 Rktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 138 RKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999876532 23356888888888888999999999999999887653
No 77
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.14 E-value=1.7e-05 Score=62.60 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=87.8
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccc
Q 013663 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (438)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 258 (438)
.+++.+.+.+.+++..+|..|+.++.++....++.....+. .+++.+..++.++++.++..++.++..++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 37788889999999999999999999998875543333333 56777888888889999999999999999766543322
Q ss_pred cH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 259 HL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 259 ~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
.. ..+++.+...+.+.+.+++..++.++..+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 23 2578888888888889999999988887753
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0045 Score=61.24 Aligned_cols=341 Identities=12% Similarity=0.160 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc----C--------CcHHHHHHHHHhhccCCCHHHHHHHHHHH-H--
Q 013663 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----F--------PDFNNYLAFILARAEGKSVEIRQAAGLLL-K-- 76 (438)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----~--------p~~~~~l~~il~~~~~~~~~~R~~A~~~L-k-- 76 (438)
.+++-+..=+.++.+-+. .+|.....|.+++. . ..++..|++|..- +++...-++-++-| +
T Consensus 11 rGL~vFISDlRncq~kea--E~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~ll--g~dIdFGhmEaV~LLss~ 86 (938)
T KOG1077|consen 11 RGLAVFISDLRNCQSKEA--EEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLL--GYDIDFGHMEAVNLLSSN 86 (938)
T ss_pred hhHHHHHHHhhhhhchHH--HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHh--cCccccchHHHHHHhhcC
Confidence 456666666666555443 56777777765541 1 1356667777554 55655555544333 2
Q ss_pred ----HHHHhhhcc-C---CHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC--Chh
Q 013663 77 ----NNLRTAYKS-M---SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DIN 146 (438)
Q Consensus 77 ----~~i~~~w~~-l---~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~--~~~ 146 (438)
+.|.+..-. + +.+....+-+.+.+-|.+.++.--..+-++||.|...+....+ -+.+-..+.++ .+.
T Consensus 87 kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~---~~DI~KlLvS~~~~~~ 163 (938)
T KOG1077|consen 87 KYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF---ADDIPKLLVSGSSMDY 163 (938)
T ss_pred CccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh---hhhhHHHHhCCcchHH
Confidence 111211111 1 1222222233333334444555566677888888766533222 23333444443 467
Q ss_pred hHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhH----------
Q 013663 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF---------- 216 (438)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~---------- 216 (438)
+|..|..||..+.+..|+.++ ...-+..++++++|.+-.|-.+|...+..++...|+.+.
T Consensus 164 vkqkaALclL~L~r~spDl~~----------~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L 233 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVN----------PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRL 233 (938)
T ss_pred HHHHHHHHHHHHHhcCccccC----------hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHH
Confidence 888899999999998887653 234556777788777655555555555555544443211
Q ss_pred ---------------------HhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc--ccccc----H--HHHHHH
Q 013663 217 ---------------------VSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--FLEPH----L--RNLFEY 266 (438)
Q Consensus 217 ---------------------~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~----~--~~li~~ 266 (438)
||+. .++..|...-.-.|+..|....+++.++.....+ .-+.- . .-+++.
T Consensus 234 ~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFea 313 (938)
T KOG1077|consen 234 SRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (938)
T ss_pred HHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHH
Confidence 1111 2233332222234567788888888877754221 11110 0 011121
Q ss_pred --------------------HhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccc
Q 013663 267 --------------------MLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (438)
Q Consensus 267 --------------------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~ 326 (438)
+-+.+.+.+..+|-.|+|-+..++..+-....++.+...++ ..+..
T Consensus 314 I~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii----~sLkt---------- 379 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTII----NSLKT---------- 379 (938)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHH----HHhcc----------
Confidence 12223445556666666666665554322333444433332 22220
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCCCc
Q 013663 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEA 405 (438)
Q Consensus 327 ~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~ 405 (438)
+ - +-++|+.|.++|-.||..-.. .++..+++++.. .|
T Consensus 380 ----------------------------e-r------DvSirrravDLLY~mcD~~Nak~IV~elLqYL~t----Ad--- 417 (938)
T KOG1077|consen 380 ----------------------------E-R------DVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET----AD--- 417 (938)
T ss_pred ----------------------------c-c------chHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh----cc---
Confidence 0 1 147899999999999988655 677777777754 34
Q ss_pred chhhHHHHHHHHHHhhcchh
Q 013663 406 WKDREAAVLALGAIAEGCIK 425 (438)
Q Consensus 406 w~~r~aal~~l~~l~~~~~~ 425 (438)
+..|+--..-.+-++|....
T Consensus 418 ~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 418 YSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 66666666666666665443
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00024 Score=69.93 Aligned_cols=107 Identities=11% Similarity=0.175 Sum_probs=82.1
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
...+.+.++.+|+++.+.+|+.|+-.+..++...|+.+.+.++.+... +.|+||.|..+|+..+++++...|+-+-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~Ek----LeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEK----LEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHh----ccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 356778899999999999999999999998888888877776665544 5889999999999999999999998877
Q ss_pred ccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 258 ~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+..|.++.++... .+-.+-..-+.+.+.+.-
T Consensus 218 ~LAP~ffkllttS---sNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 218 QLAPLFYKLLVTS---SNNWVLIKLLKLFAALTP 248 (877)
T ss_pred cccHHHHHHHhcc---CCCeehHHHHHHHhhccc
Confidence 7666666665433 233444455555555544
No 80
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00013 Score=65.63 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhh-hccCCHhhHHHHHHHhhhhhhc-CcHHHHHHHHHHHHHHHHhhccCc----hHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAG----WLELLQA 135 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~-w~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~la~i~~~~~~~~----w~~ll~~ 135 (438)
+.+.+.+.-|..-+|..+.+. -..+.+-+...+...+++.|.+ ......--+|+++..|+.....+. -.+..|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 456666666777777776552 1223333444555667777754 456667789999999998753221 2467899
Q ss_pred HHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCH--HHHHHHHHHHHHHHccc-c
Q 013663 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT--SLRKLSLGSVNQFIMLM-P 212 (438)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~--~vr~~al~~l~~~~~~~-~ 212 (438)
+++.+.+++..+|+.++++|+.+..+.+.. + ++ + .-...+..++..+.+... .+-..+..+|.++...- |
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~-R-D~--v---L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGC-R-DY--V---LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhH-H-HH--H---HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 999999999999999999999998766542 1 00 0 013345556666665433 45556778888887753 3
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 213 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
..--..+...++.|.+++-..|+++...||+++.-+.....+.+...+. .+.+-++..+.+++..+...|+..++.+..
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 2222345566777888887778999999999999887654444332222 233445566667777777788877766654
No 81
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.09 E-value=0.00049 Score=61.62 Aligned_cols=187 Identities=16% Similarity=0.092 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH-----HHhhhhhhcCcHHHHHHHHHHHHHH
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----SELLPCLGAADRHIRSTVGTIVSVV 120 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~-----~~ll~~l~~~~~~vr~~~a~~la~i 120 (438)
.|+.+..|..+|.. +.+|.++..|...+.+.-. .+..++.|+ ..+...+.++++.+|.++..++..+
T Consensus 10 ~~~~l~~Ll~lL~~--t~dp~i~e~al~al~n~aa------f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 10 EAQELQKLLCLLES--TEDPFIQEKALIALGNSAA------FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred CHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhcc------ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 34556778888876 8899999999999887532 223444444 3566667789999999999999988
Q ss_pred HHhh-ccCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHH
Q 013663 121 VQLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLR 197 (438)
Q Consensus 121 ~~~~-~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr 197 (438)
+... ....-...++.+.+.+.+. +...+..|+.+|..+.-.-.. ...+...+|.++.++..++..+|
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----------~~~l~~~i~~ll~LL~~G~~~~k 151 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----------HHMLANYIPDLLSLLSSGSEKTK 151 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----------hhhHHhhHHHHHHHHHcCChHHH
Confidence 7654 2233356778877766553 456778899999877422111 12356678889999999999999
Q ss_pred HHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhh
Q 013663 198 KLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~ 251 (438)
..++++|.++... |......+ .+.+..+..+++. .+.++...++..+..+.+.
T Consensus 152 ~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 152 VQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999887654 22111111 1233444444543 3456677777777666543
No 82
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00071 Score=68.10 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=145.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHH
Q 013663 56 ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQA 135 (438)
Q Consensus 56 il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~ 135 (438)
.+.+-.+..+.+|-.|...|++.++++ ..-+-.....+....+..+.+.++.|=-.+-..++.++..++. +++|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHH
Confidence 333333667889999999999999866 2333344556777888888898888888888888888877553 46666
Q ss_pred HHHHhccC----ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 136 LVTCLDSN----DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 136 l~~~l~~~----~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
+.+...+. .++.|...=.++..++...++.+. ++...++..|+.++.+++...|..++..++.++...
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~--------~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF--------KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 66633321 123333333778888887776542 466788999999999999999999999999988765
Q ss_pred chhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhCcccccccH----HHHHHHHhhhhc-CCChHHHhHHHH
Q 013663 212 PSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHL----RNLFEYMLQVNK-DTDDDVALEACE 284 (438)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~----~~li~~~~~~~~-~~~~~v~~~a~~ 284 (438)
.......+-..+..+.... .|+...+|++|+..+..+...-+..+.|.+ -+....+..... +.++.++..|..
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 4333334445555555544 367789999999999998876665555533 234444444443 445556655543
No 83
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.04 E-value=0.014 Score=57.61 Aligned_cols=307 Identities=12% Similarity=0.114 Sum_probs=151.9
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCch
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW 129 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w 129 (438)
......||.. .+.+...+++|+..+- ++|+..|. ..+.-.+.++.+.-+++..||..+-..|..+++.. ++.-
T Consensus 22 ~~~y~~il~~-~kg~~k~K~Laaq~I~----kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v 94 (556)
T PF05918_consen 22 EEDYKEILDG-VKGSPKEKRLAAQFIP----KFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHV 94 (556)
T ss_dssp HHHHHHHHHG-GGS-HHHHHHHHHHHH----HHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-H
T ss_pred HHHHHHHHHH-ccCCHHHHHHHHHHHH----HHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHH
Confidence 3334455553 3567999999996554 44554443 44445577788888999999999999999999863 3344
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
+.+...|.+.+++.++..+...=.+|.++...-+.. .+..++..+... ...+..+|..+++.+..-+.
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-----------tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG-----------TLTGLFSQIESS-KSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHH----HS-HHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHh
Confidence 778899999999888766666666666665543321 123333333321 24577899999999987665
Q ss_pred ccchh-hH--HhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc--c--cccHHHHHHHHhhhhc------CCC
Q 013663 210 LMPSA-LF--VSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF--L--EPHLRNLFEYMLQVNK------DTD 275 (438)
Q Consensus 210 ~~~~~-~~--~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~--~~~~~~li~~~~~~~~------~~~ 275 (438)
-++.. +. .-++ .++..+.+.++|-.. .=+..+..+.....-+ . .+....+++++..... ..+
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTa----eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD 238 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTA----EEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSD 238 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--H----HHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSS
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcC
Confidence 55432 22 2233 344555566665222 2233444444332211 1 1223567777775542 123
Q ss_pred hHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 013663 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (438)
Q Consensus 276 ~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 355 (438)
++.....+.++..-.-...-.-.-..++.-+...++..+...+
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~------------------------------------- 281 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLP------------------------------------- 281 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT----------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCC-------------------------------------
Confidence 4443333333333111100000012222222222222222110
Q ss_pred CCccccccchhhhhhHHHHHHHHHhhhch----hhHHhHHHHHHHHhcc---CCCCcchhhHHHHHHHHHHhhcchh
Q 013663 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSA---SGDEAWKDREAAVLALGAIAEGCIK 425 (438)
Q Consensus 356 ~~d~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~---~~~~~w~~r~aal~~l~~l~~~~~~ 425 (438)
+ ..|..-..++..++...|. .+++.+++.+..++-. ....++-.-|+.+++|..++...++
T Consensus 282 -e--------~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 282 -E--------DRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp -----------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred -h--------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 1 1133455566666666664 4555665655544422 1235577899999999999987664
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00055 Score=66.91 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=128.3
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcc
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (438)
.+....++.+..||..+...+-.+.. +-.--..+.....+.+++....+|..|+..+.-.-...|-....+... ..
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e--~k 277 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE--EK 277 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh--hh
Confidence 35555567788999988888766654 222334566777788888889999999988877766664222111000 13
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHH-------------HH----------------
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQ-------------GL---------------- 226 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~-------------~l---------------- 226 (438)
.....+..+-..+.|-+..||..|.+.|+.+-..-.+.+.+.+. .++. .+
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 45667788888999999999999999999875543222211111 1111 11
Q ss_pred ---------------------HHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHH
Q 013663 227 ---------------------FLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (438)
Q Consensus 227 ---------------------~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~ 285 (438)
...+.|.-.+||++|+..++.++...|.+ ...-+.++...+.|+.++||..|+..
T Consensus 358 psee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~a 433 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFA 433 (823)
T ss_pred chhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11112222489999999999999888765 35678888888899999999999999
Q ss_pred HHHhhcc
Q 013663 286 WHSYFEA 292 (438)
Q Consensus 286 ~~~~~~~ 292 (438)
+..++.+
T Consensus 434 L~~Is~~ 440 (823)
T KOG2259|consen 434 LTMISVH 440 (823)
T ss_pred HHHHHHH
Confidence 8888765
No 85
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.98 E-value=0.00051 Score=69.58 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=112.3
Q ss_pred HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc----cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCC
Q 013663 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGG----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (438)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~----~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (438)
-+.+.+.+...+..+|...-.+++.+..+.| ....|.++|.|++.+.-+|..+|-..+.++..+....++..
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~---- 944 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ---- 944 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc----
Confidence 3444455554455666666666666665543 36789999999999998999999999999999888777643
Q ss_pred CCCCcchhhhHHHHHHHhccCCC---HHHHHHHHHHHHHHHcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 171 PGLAECPINIFLPRLLQFFQSPH---TSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~---~~vr~~al~~l~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
..++..++|.++..-.+++ ..||..|++|++.+.+..|. .+.++-+.++.++...+.|+.--+|+.|.++=.
T Consensus 945 ----t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 945 ----TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred ----hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 3578999999988887765 56999999999999998873 455666788999999998888889999887643
No 86
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.96 E-value=0.0017 Score=58.62 Aligned_cols=241 Identities=18% Similarity=0.203 Sum_probs=154.9
Q ss_pred HHHHhccCChhhHhHHHHHHHHHHhccccc-cccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchh
Q 013663 136 LVTCLDSNDINHMEGAMDALSKICEDIPQV-LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (438)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (438)
|-..+.+.++..|..|+.+|..+++.++.. ++ ...+.-++.-+..-+. +...-..+++++..++.. +..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~-------~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLS-------RQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc-------HHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC
Confidence 445677889999999999999999999864 22 1345555555566663 333334457777777743 211
Q ss_pred hHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhc-CCChHHHhHHHHHHHHhhc
Q 013663 215 LFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 215 ~~~~~~~ll~~l~~~~~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~ 291 (438)
-......++..+++-.. .-....|..+++.+..+++.+...+...-..++..+++.+. .+|++--..+++++..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 12223456666655332 12247899999999999998877766666677877777765 4688888899998888876
Q ss_pred cCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhH
Q 013663 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (438)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a 371 (438)
.- . +.++.+.++.++.-+...+ + +|. . +|. + ...+
T Consensus 154 ~~---~-~~~~~e~lFd~~~cYFPI~--------------------F-~pp---------~----~dp-----~--~IT~ 188 (262)
T PF14500_consen 154 EF---D-ISEFAEDLFDVFSCYFPIT--------------------F-RPP---------P----NDP-----Y--GITR 188 (262)
T ss_pred hc---c-cchhHHHHHHHhhheeeee--------------------e-eCC---------C----CCC-----C--CCCH
Confidence 41 1 3667777777766555421 0 000 0 000 0 1223
Q ss_pred HHHHHHHHhhhc--hhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhccccc
Q 013663 372 AAALDVLSNVFG--DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEV 434 (438)
Q Consensus 372 ~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~~i 434 (438)
.++-..+-..+. ..+-|..+|++.+-+.+.. ...|.-++.++..-++..+ +.+.+|...|
T Consensus 189 edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~---~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 189 EDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTS---PSVKLDSLQTLKACIENYGADSLSPHWSTI 251 (262)
T ss_pred HHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 344444444443 3677889999999998877 6788899999988777654 4567776554
No 87
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.011 Score=59.37 Aligned_cols=190 Identities=10% Similarity=0.097 Sum_probs=126.9
Q ss_pred HhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
.+..-.+-+.+-+-|++++..|...+-.+++.|+. +.--+++.|.+.+.++..++.+|.-|+.|...+...+|+.
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s---~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-- 176 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-- 176 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--
Confidence 34444555666666776766666665566666653 4455899999999999999999999999999999998874
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch---hhHHhHHHHHHHHHHhhC-----------CC
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSN-----------DP 233 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~ll~~l~~~~~-----------~~ 233 (438)
++.+++.+.+.+.+.+..|-.+++..+..++...|+ .|.+.++.++..|-++.. -+
T Consensus 177 ----------~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~ 246 (866)
T KOG1062|consen 177 ----------VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGIS 246 (866)
T ss_pred ----------HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCC
Confidence 577888889999988888888888888888887553 334444555554444332 13
Q ss_pred CHHHHHHHHHHHHHHHhhCccc---ccccHH---------------HHHHHHhhhhc-CCChHHHhHHHHHHHHhhcc
Q 013663 234 SAEVRKLVCAAFNLLIEVRPSF---LEPHLR---------------NLFEYMLQVNK-DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 234 ~~~~~~~a~~~l~~l~~~~~~~---~~~~~~---------------~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~ 292 (438)
+|-+...+++.|.-+....++. |...+. -+.+++..++. ..+..+|..|+..++.|.-.
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n 324 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLN 324 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcC
Confidence 5666777777666555443321 111111 12233333322 35678899999999888654
No 88
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00037 Score=63.43 Aligned_cols=253 Identities=11% Similarity=0.054 Sum_probs=159.7
Q ss_pred CCCCHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hhccCCHhhHHHHH
Q 013663 26 SPSSTADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT-AYKSMSPSNQQYIK 95 (438)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~-~w~~l~~~~~~~i~ 95 (438)
+-|-- +|+.|...|-.+.+ +.+.++.|...+. +.++++|.+|...+.++-.. .-.++-.+.-..+.
T Consensus 178 skdir-vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~---s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv 253 (550)
T KOG4224|consen 178 SKDIR-VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK---SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLV 253 (550)
T ss_pred cchhh-HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc---cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchH
Confidence 44555 88889888877653 3455667777776 68999999999888775421 11111122223456
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhh-ccCc--hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~~~~--w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
..|++++.+++++++-+++.++..++... +... -..-+|.+.+.++++..........|+..+.-+-..+ .
T Consensus 254 ~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe------~ 327 (550)
T KOG4224|consen 254 PALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE------V 327 (550)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc------c
Confidence 67888889999999999999999998764 2211 1235788888888765444455556665543322211 0
Q ss_pred CCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 173 LAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
+. .-..++..++..+.-. +.+++-.|..+|.++............. .-++.+..++-|..-.++...-.|+..++-
T Consensus 328 lI--~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 328 LI--ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ce--ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 00 1234667778888765 5569999999999887633211111111 234555556666666777777777776664
Q ss_pred hCcccccccH--HHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 251 VRPSFLEPHL--RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 251 ~~~~~~~~~~--~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
... ++.++ ..++|.++..+.+.+++++-.|...+..+++.
T Consensus 406 ~d~--~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 406 NDN--DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccc--cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 322 22222 25666666667778889998888888887764
No 89
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0035 Score=64.87 Aligned_cols=211 Identities=11% Similarity=0.113 Sum_probs=144.2
Q ss_pred CcHHHH-HHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhc-CcHHHHHHHHHHHHHHHHhh
Q 013663 47 PDFNNY-LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 47 p~~~~~-l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~la~i~~~~ 124 (438)
|+.+.. +-+++.+-.+.+..+|..||-.+++...+ +|.+-..++...+++.++- +++...+.+|.++|.+|...
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r----lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR----LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 444443 33344433588999999999888877654 6788888888888886653 36888999999999999764
Q ss_pred --ccCchHHHHHHHHHHhc--------cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH-HHhccCCC
Q 013663 125 --GIAGWLELLQALVTCLD--------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL-LQFFQSPH 193 (438)
Q Consensus 125 --~~~~w~~ll~~l~~~l~--------~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l-~~~l~~~~ 193 (438)
.+...++++|.+...+. +....+|.+|+.++=.+.+...+. + +.+++..+++.+ ...+=|++
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~----l~p~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---D----LKPVLQSLASALLIVALFDRE 484 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---h----hhHHHHHHHHHHHHHHhcCch
Confidence 46778899999988774 123579999999988888877652 1 123445555554 44566888
Q ss_pred HHHHHHHHHHHHHHHcccch------------h-------------------hHHhHHHHHHHHHHh-hCCCCHHHHHHH
Q 013663 194 TSLRKLSLGSVNQFIMLMPS------------A-------------------LFVSMDQYLQGLFLL-SNDPSAEVRKLV 241 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~------------~-------------------~~~~~~~ll~~l~~~-~~~~~~~~~~~a 241 (438)
..+|.+|.-++...+.-.+. . +..+...+++.+..- +.+=|..+|..+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 99999988888766543210 0 011112233333221 334467899999
Q ss_pred HHHHHHHHhhCccccc-ccHHHHHHHHh
Q 013663 242 CAAFNLLIEVRPSFLE-PHLRNLFEYML 268 (438)
Q Consensus 242 ~~~l~~l~~~~~~~~~-~~~~~li~~~~ 268 (438)
..+|..+....|+.+. -+++++++.++
T Consensus 565 a~aL~~Ls~~~pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 565 AYALHKLSLTEPKYLADYVLPPLLDSTL 592 (1133)
T ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence 9999999999998877 45667766653
No 90
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.012 Score=60.11 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=93.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH
Q 013663 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (438)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~ 95 (438)
..++....+.|.+ ++|--.-.|..+.+ .|+--...++-+..+ ++.++.+|.+|...+... =.++....+-
T Consensus 58 ~dViK~~~trd~E-lKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~~ 129 (757)
T COG5096 58 PDVIKNVATRDVE-LKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKELLGNII 129 (757)
T ss_pred HHHHHHHHhcCHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHHHHHHH
Confidence 3444444555555 67777777776665 665433333333333 678888888888666432 0234556777
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHH--HHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE--LLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~--ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
..+.+++.++.+.||+.++.+++.+.+.+. +..++ ++..+...+.+.+|.+...|+..|..+..+
T Consensus 130 ~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 130 DPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 888889999999999999999999998753 22232 455566667788999999999999988777
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.01 Score=58.49 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=83.7
Q ss_pred HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
+..-+...+.+++..+|..|+..|..+.+ +.. .-..+.....+.+.|....||++|++.+.-+.+..
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~k-----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFK-----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--ccc-----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 33447777888899999999999888766 221 12556677889999999999999999998888776
Q ss_pred chh------hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 212 PSA------LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 212 ~~~------~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
|.. -.......+..+|..+.|.+..+|..|.+.|+.+-....+++
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i 316 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII 316 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence 411 123445677888888889889999999999887765544433
No 92
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.75 E-value=0.0033 Score=64.95 Aligned_cols=206 Identities=16% Similarity=0.179 Sum_probs=153.0
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
.+-+.+...+.+.+|..|.-|+.-+..+++.-...... .+...+...+-..+.|.+..|...|+.++..++..
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~-------~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVK-------GYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhcccccccc-------CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 33455666677788999999999999888877722111 23344444555566788999999999999999998
Q ss_pred cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 211 MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 211 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
++..+.++...+++.++..+.+.-..+|..+..++..+... ..+..+++.+...+++.++.++..+..++....
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKL 399 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 88777777778888888888877788888888888877763 345688899999999999999999988887765
Q ss_pred ccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhh
Q 013663 291 EAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (438)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~ 370 (438)
....-......-+..++|.++....++ ...+|.+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~----------------------------------------------~~~VR~A 433 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDT----------------------------------------------DKDVRKA 433 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCC----------------------------------------------cHHHHHH
Confidence 542111123456677788887766421 1367999
Q ss_pred HHHHHHHHHhhhchhhHHhHHHHHH
Q 013663 371 SAAALDVLSNVFGDEILPTLMPVIQ 395 (438)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~ 395 (438)
|..++..+...+|+..+..++.-+.
T Consensus 434 a~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 434 ALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 9999999999999977666555543
No 93
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0022 Score=64.74 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=141.8
Q ss_pred HHHHHHHHhccCChhhHhHHHHHHHHHHhcc--ccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 132 LLQALVTCLDSNDINHMEGAMDALSKICEDI--PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~--~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
-+...+..+.++-...|.+|+..+..+++.- .+.. ....++..++..+.|.++.|-..|++.+..++.
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~----------~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLI----------QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE 797 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhh----------hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH
Confidence 3555556666666789999999999998833 2211 246688889999999999999999999999888
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
..|+.+.+- +..--.+.-+.+.++.+..+-+++.+++...++.+..|...++.+++.+..+++...|..++..++.+
T Consensus 798 vy~e~il~d---L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 798 VYPEDILPD---LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred hcchhhHHH---HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 877654332 22111111122224556666699999999999999999999999999999988888899999888888
Q ss_pred hccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhh
Q 013663 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (438)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~ 369 (438)
|.. ....+..++..++-.++.-..- | ++.-+|+
T Consensus 875 cq~--~a~~vsd~~~ev~~~Il~l~~~----------------------------------------d-----~s~~vRR 907 (982)
T KOG4653|consen 875 CQL--LAFQVSDFFHEVLQLILSLETT----------------------------------------D-----GSVLVRR 907 (982)
T ss_pred HHH--HhhhhhHHHHHHHHHHHHHHcc----------------------------------------C-----CchhhHH
Confidence 764 1112344666655555433220 1 1356799
Q ss_pred hHHHHHHHHHhhhchhhHHhH
Q 013663 370 CSAAALDVLSNVFGDEILPTL 390 (438)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l 390 (438)
+|..++..+-...|...+|.+
T Consensus 908 aAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 908 AAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred HHHHHHHHHHhccchhhHHHH
Confidence 999999999999998887754
No 94
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.69 E-value=0.086 Score=54.08 Aligned_cols=215 Identities=13% Similarity=0.068 Sum_probs=130.0
Q ss_pred hHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccc
Q 013663 90 NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 90 ~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~--~~~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
....+-..+...+. +..|..-..+-..++..+... .++-...++......+. +..+..+.+|+.++...| ..
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~- 521 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KV- 521 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---Cc-
Confidence 33444444444554 334544445666677666653 23344555555555444 345667888888776666 21
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHh----HHHHHHHHHHhhCCCCHHHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS----MDQYLQGLFLLSNDPSAEVRKLV 241 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~----~~~ll~~l~~~~~~~~~~~~~~a 241 (438)
.++....+.++..+.++..+.+.+|-...+++|...+.+-|+.-... .+.++..+.... +||.+-..+
T Consensus 522 ------~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s--~DP~V~~~~ 593 (1005)
T KOG2274|consen 522 ------KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS--EDPQVASLA 593 (1005)
T ss_pred ------eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc--CCchHHHHH
Confidence 12234568888889999999999999999999999998877532211 123333333333 346677777
Q ss_pred HHHHHHHHhhCcccccccHHHHHHHHhhhhcCC----ChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcC
Q 013663 242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT----DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (438)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~----~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 317 (438)
-.++-++... .....|+-..++|-+++.+..+ .......|++++.++.+.... ..-...+...+|.+.+..-.+
T Consensus 594 qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~-pL~~~l~~~~FpaVak~tlHs 671 (1005)
T KOG2274|consen 594 QDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS-PLPNLLICYAFPAVAKITLHS 671 (1005)
T ss_pred HHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC-CccHHHHHHHhHHhHhheeec
Confidence 6666666542 2233455567777777776543 356677899999999886211 122345666778777766544
Q ss_pred h
Q 013663 318 D 318 (438)
Q Consensus 318 ~ 318 (438)
+
T Consensus 672 d 672 (1005)
T KOG2274|consen 672 D 672 (1005)
T ss_pred C
Confidence 3
No 95
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.68 E-value=0.0056 Score=54.88 Aligned_cols=211 Identities=18% Similarity=0.176 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC---------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~ 81 (438)
++.++.+..+|+. +.|+. +++.|...+......| +.+..+..++. ..++.+|.-|...|.|.
T Consensus 11 ~~~l~~Ll~lL~~--t~dp~-i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~---~p~~~vr~~AL~aL~Nl--- 81 (254)
T PF04826_consen 11 AQELQKLLCLLES--TEDPF-IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN---DPNPSVREKALNALNNL--- 81 (254)
T ss_pred HHHHHHHHHHHhc--CCChH-HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC---CCChHHHHHHHHHHHhc---
Confidence 6666778777775 44555 8899988887765433 33334444453 68899999999888865
Q ss_pred hhccCCHhhHHHHHHHhhhhhh----cC-cHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhccCChhhHhHHHHHH
Q 013663 82 AYKSMSPSNQQYIKSELLPCLG----AA-DRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDAL 155 (438)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l~----~~-~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l 155 (438)
..+.+.+..|+..+-+.+. .+ +..+..+.-.+|..+.... ........+|.++..+.+++...+..++.+|
T Consensus 82 ---s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 82 ---SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred ---CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 3345555566655444432 23 5677777778888876433 2234456788888999999999999999999
Q ss_pred HHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccch-------------hhHHhH--
Q 013663 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS-------------ALFVSM-- 219 (438)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~-------------~~~~~~-- 219 (438)
..+.+.-.-. + .+ ...+.++.|+..++.. +.++...++..+.++-..+.+ .+...+
T Consensus 159 ~nLS~np~~~-~----~L---l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e 230 (254)
T PF04826_consen 159 VNLSENPDMT-R----EL---LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGE 230 (254)
T ss_pred HHhccCHHHH-H----HH---HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHcc
Confidence 8887643211 0 01 1234567788888774 677788888888877554421 111111
Q ss_pred -HHHHHHHHHhhCCCCHHHHHHH
Q 013663 220 -DQYLQGLFLLSNDPSAEVRKLV 241 (438)
Q Consensus 220 -~~ll~~l~~~~~~~~~~~~~~a 241 (438)
..+-+.+..+..++|++||.++
T Consensus 231 ~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 231 SSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHHcCCCHHHhhhc
Confidence 2344555566678888888754
No 96
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.68 E-value=0.064 Score=60.59 Aligned_cols=192 Identities=15% Similarity=0.142 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhc--cCCH-h-hHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhh---ccCchHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYK--SMSP-S-NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLG---GIAGWLELL 133 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~--~l~~-~-~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~---~~~~w~~ll 133 (438)
+.+..++.+|.-.||..-.+... .++. . ++..+ ..+...|. +.+..||..+..++..+.... -...|+.++
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefL-kPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFM-KPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 44677899999988887665432 1111 1 23333 44444454 457899999999999988654 247899999
Q ss_pred HHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccc
Q 013663 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 134 ~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~ 212 (438)
..+-....+..+.....|+.++..|+.+.-..+.. .-......++..+.+..+.. +.++-..|+..|..+...+-
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~----~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE----TETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc----cchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 99988888878888899999999888764432210 00012344555555555433 35555566666664422220
Q ss_pred h------------------------------------hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 213 S------------------------------------ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 213 ~------------------------------------~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
+ ......=.++..+..+..|+.++||..|++.|-++...|+..|
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 0 0001111234444455668889999999999999999999888
Q ss_pred cc
Q 013663 257 EP 258 (438)
Q Consensus 257 ~~ 258 (438)
.+
T Consensus 1383 s~ 1384 (1780)
T PLN03076 1383 SL 1384 (1780)
T ss_pred CH
Confidence 86
No 97
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0034 Score=56.53 Aligned_cols=177 Identities=16% Similarity=0.118 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhh-ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC
Q 013663 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (438)
Q Consensus 113 ~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (438)
...++-.+.+.. +..--|++.|.|...+..++..++..++..++.+++++.+.--+ .++.-.-+.+++.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVs---eillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVS---EILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHH---HHHHHhhhhHHHHHHHHHcC
Confidence 456677777654 44566899999999999888999999999999999988753100 11111236788999999999
Q ss_pred CCHHHHHHHHHHHHHHHcccchhhHHhHHH-HHHHH--HHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHH
Q 013663 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YLQGL--FLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYM 267 (438)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-ll~~l--~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~ 267 (438)
.+.+|.++|.+.+.++..+ |..+...+++ ++.-+ .++....+.-+|...++.+.++.+..|......- ..++..+
T Consensus 140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 9999999999999987654 2222211110 11100 0111112234677777888888776665432211 3677777
Q ss_pred hhhhcC-CChHHHhHHHHHHHHhhccC
Q 013663 268 LQVNKD-TDDDVALEACEFWHSYFEAQ 293 (438)
Q Consensus 268 ~~~~~~-~~~~v~~~a~~~~~~~~~~~ 293 (438)
...++. ++.-|+..+++....+++.+
T Consensus 219 eaElkGteDtLVianciElvteLaete 245 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETE 245 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHh
Confidence 777665 56778999999999998873
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.073 Score=53.06 Aligned_cols=190 Identities=14% Similarity=0.185 Sum_probs=103.9
Q ss_pred HHhhhhhhc--CcHHHHHHHHHHHHHHHHhhc----cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc-
Q 013663 96 SELLPCLGA--ADRHIRSTVGTIVSVVVQLGG----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS- 168 (438)
Q Consensus 96 ~~ll~~l~~--~~~~vr~~~a~~la~i~~~~~----~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~- 168 (438)
.-+-+.|.+ ....||+++|.++-.+.+..+ ++.|- ..+.+.+.+++-.+..++...+..+++..++....
T Consensus 149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~---~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~ 225 (938)
T KOG1077|consen 149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWA---QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTC 225 (938)
T ss_pred hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHH---HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhh
Confidence 334455543 478999999999999998853 35564 44455555555444445555555555544432110
Q ss_pred --------------------CCCCCC--cchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccc---hh--------
Q 013663 169 --------------------DVPGLA--ECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP---SA-------- 214 (438)
Q Consensus 169 --------------------~~~~~~--~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~---~~-------- 214 (438)
++.=++ .+-+..=+-.+++.+-. .++.+|..-.+++..++.... +.
T Consensus 226 ~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na 305 (938)
T KOG1077|consen 226 LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNA 305 (938)
T ss_pred HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhh
Confidence 000000 00011111122233322 367788888888887766432 10
Q ss_pred ----hH-------------HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc--cccccHHHHHHHHhhhhc-CC
Q 013663 215 ----LF-------------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--FLEPHLRNLFEYMLQVNK-DT 274 (438)
Q Consensus 215 ----~~-------------~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~li~~~~~~~~-~~ 274 (438)
+. ..+..-++.|.+++.+.+..+|..+++.++.++...+. .++.| ...++..++ +.
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkter 381 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhcccc
Confidence 00 01112234444555566666777777777777654221 12222 334455566 67
Q ss_pred ChHHHhHHHHHHHHhhcc
Q 013663 275 DDDVALEACEFWHSYFEA 292 (438)
Q Consensus 275 ~~~v~~~a~~~~~~~~~~ 292 (438)
|-.+|+.|++++..+|..
T Consensus 382 DvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred chHHHHHHHHHHHHHhch
Confidence 889999999999999986
No 99
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.06 Score=54.35 Aligned_cols=208 Identities=11% Similarity=0.067 Sum_probs=133.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh--ccCCHhh
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQ-QYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY--KSMSPSN 90 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~-~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w--~~l~~~~ 90 (438)
-++|.++|+. +.|+ ....|-+.+- .+.+..+.-.+...+..+-.+.++++|.+.-+.|-+.-...= .-++
T Consensus 37 ~~dL~~lLdS--nkd~--~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS--- 109 (968)
T KOG1060|consen 37 HDDLKQLLDS--NKDS--LKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS--- 109 (968)
T ss_pred hHHHHHHHhc--cccH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee---
Confidence 3566666763 2233 4445555544 444433333444455554458899999998888877655421 0011
Q ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCC
Q 013663 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (438)
.+.+-+.|.++++.+|..+-.+++.|=.. ---|-++-.+.++..+..+.+|..|..++-.+...-++
T Consensus 110 ----IntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e------ 176 (968)
T KOG1060|consen 110 ----INTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE------ 176 (968)
T ss_pred ----HHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh------
Confidence 24566778999999999988888877332 22355666777788888999999999998777543332
Q ss_pred CCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
+-.++...+-.+|.|.++-|--+|+-++-.++-.-=+-++++++ .+|+++-|-++.=+.-++..|.++++
T Consensus 177 ------~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyr----klC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 177 ------QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYR----KLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred ------hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHH----HHHhhccchhhhhHHHHHHHHHHHHH
Confidence 23478888899999999999888887776654221122234443 44555555455556677788888876
Q ss_pred h
Q 013663 251 V 251 (438)
Q Consensus 251 ~ 251 (438)
.
T Consensus 247 ~ 247 (968)
T KOG1060|consen 247 H 247 (968)
T ss_pred h
Confidence 5
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.015 Score=58.13 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=75.3
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHH
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-------NDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~~~~a~~~l~~l~ 249 (438)
.+..++..++..++.++-+||..++.....++..- ++..+++.+-.-+ .+.+.+.|...++++...+
T Consensus 314 il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 45667778889999999999999998887776543 3334444333211 1223467888888888877
Q ss_pred hhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 250 EVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 250 ~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
-.+|+ +...+++.++..+.|.++.-....+.|+....+.
T Consensus 388 v~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 388 VKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred hcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 76665 4567888888888888877777777777776665
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.63 E-value=0.00015 Score=48.37 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
+.||..|+.+|+.+....++...++++.+++.|..+++|+++.||..++.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4799999999999877777778888899999999999999999999999998754
No 102
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.63 E-value=0.057 Score=50.51 Aligned_cols=189 Identities=13% Similarity=0.163 Sum_probs=122.8
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhc-----------cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGG-----------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~-----------~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
..|+..|..-+-..|+.++.+.+.+.+... ...||+++..|+....+++... .+-.+|+..++. ..
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~-e~ 155 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKH-ES 155 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTS-HH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhh-HH
Confidence 344555555566677777777777776531 1456888888888887654322 222233333221 11
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc----hhhHHhHHHHHHHHHHhhCCCCHHHHHH
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVRKL 240 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~ 240 (438)
... .++ -+..+-.+++.++.++.+|..-|+.++..++...+ +.+..+...++.....++.+++.-.|++
T Consensus 156 l~~----~iL---~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 156 LAK----IIL---YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHH----HHH---TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHH----HHh---CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 000 000 12234457788999999999999999999877654 3345666778887778888888999999
Q ss_pred HHHHHHHHHhh--CcccccccHH--HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCC
Q 013663 241 VCAAFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL 294 (438)
Q Consensus 241 a~~~l~~l~~~--~~~~~~~~~~--~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~ 294 (438)
+++.|+++... +...+..|+. .-+.++...+++.+..++..|++...-+...|.
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999853 3455566664 677778888899999999999999988876643
No 103
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.62 E-value=0.014 Score=54.12 Aligned_cols=189 Identities=18% Similarity=0.131 Sum_probs=127.0
Q ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHhhc-----cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 98 LLPCLGAADRHIRSTVGTIVSVVVQLGG-----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~la~i~~~~~-----~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
.+..+.+.....|..+-..+-.+.+..+ .....++++.+..+++.+....+..|+.+++-++-.++..-..
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~---- 123 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS---- 123 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH----
Confidence 3444556677888777777666665432 2456778999999998877777888888888888776632111
Q ss_pred CCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccc---hhhH---HhHHHHHHHHHHhh--------CCCCHH
Q 013663 173 LAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP---SALF---VSMDQYLQGLFLLS--------NDPSAE 236 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~---~~~~---~~~~~ll~~l~~~~--------~~~~~~ 236 (438)
......+.|.|.+.+.|. +..+|..++.||+-+.-+.. +... +.++.++...+.-. ..+++.
T Consensus 124 --~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 124 --EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred --HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 134567788888888876 45678888888876443322 2222 22332222211100 012357
Q ss_pred HHHHHHHHHHHHHhhCcc-cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 237 VRKLVCAAFNLLIEVRPS-FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
+...|+.+|+-++...+. .+..++...++.+...+.+.+.+||..|-+.+.-+.|.
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999877665 35566677888888888889999999999988877664
No 104
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00032 Score=51.95 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=68.1
Q ss_pred HHhhhhh-hcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 96 SELLPCL-GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 96 ~~ll~~l-~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
+.|++.+ .++++.+|..++.+++.+. -++.+|.+.+.++++++.+|..++..|+.+ +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~----------- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRI----G----------- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----------
Confidence 3567777 6789999999999999442 258999999999999999999999999754 2
Q ss_pred cchhhhHHHHHHHhccCC-CHHHHHHHHHHHH
Q 013663 175 ECPINIFLPRLLQFFQSP-HTSLRKLSLGSVN 205 (438)
Q Consensus 175 ~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~ 205 (438)
.+..++.+.+.+.++ +..||..|+.+|+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 255778888888775 5667999998875
No 105
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.59 E-value=0.0035 Score=67.01 Aligned_cols=148 Identities=21% Similarity=0.262 Sum_probs=109.4
Q ss_pred ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHH
Q 013663 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (438)
+.+.+..++..++..+..+...+|..|+.||..+++.-+..+. -+.+-..+-.-++|.+..||.+|++.+
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------~~dvq~~Vh~R~~DssasVREAaldLv 879 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS----------RPDVQEAVHGRLNDSSASVREAALDLV 879 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------CHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 4567788888899888888889999999999999886665432 255666778889999999999999999
Q ss_pred HHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHH
Q 013663 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~ 284 (438)
|.++...|+...++ .+-+.+.+.|+.-.||+.+++.+.++....|.+- ..+.++--++.-..|++..|...+.+
T Consensus 880 Grfvl~~~e~~~qy----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~--~i~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 880 GRFVLSIPELIFQY----YDQIIERILDTGVSVRKRVIKILRDICEETPDFS--KIVDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred hhhhhccHHHHHHH----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHhccchhHHHHHHHH
Confidence 99999887655544 4444445567778999999999999999887652 22333333334445555557777766
Q ss_pred HHHH
Q 013663 285 FWHS 288 (438)
Q Consensus 285 ~~~~ 288 (438)
.+..
T Consensus 954 tf~k 957 (1692)
T KOG1020|consen 954 TFLK 957 (1692)
T ss_pred HHHH
Confidence 4444
No 106
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.59 E-value=0.0053 Score=60.58 Aligned_cols=159 Identities=14% Similarity=0.216 Sum_probs=98.2
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcc
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (438)
.+|.+.. .+...++.+|+.|...++. +|..-.+.+..++..|.+.+..+|..|+.-|-.+|++-+.
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~-FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~------------ 92 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKH-FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE------------ 92 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T------------
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH------------
Confidence 3444444 4688999999999999986 4555678999999999999999999999999888887654
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hCccc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSF 255 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~-~~~~~ 255 (438)
++..+...|.++|+..++.....+=++|.+++..-|.. .+..++..+... ...++.+|..++..+..-+. ..+..
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 47889999999999888887777778888877665422 122232222110 13467789998888754443 33445
Q ss_pred ccc--cHH-HHHHHHhhhhcC
Q 013663 256 LEP--HLR-NLFEYMLQVNKD 273 (438)
Q Consensus 256 ~~~--~~~-~li~~~~~~~~~ 273 (438)
+.| -+. -++..+-..++|
T Consensus 169 ~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 169 LTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp S---HHHHHHHHHHHHHHCTT
T ss_pred hhchHHHHHHHHHHHHHHHHh
Confidence 542 222 233444455554
No 107
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.56 E-value=0.0081 Score=62.22 Aligned_cols=186 Identities=15% Similarity=0.167 Sum_probs=143.7
Q ss_pred HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc---cCchHHHHHH-HHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQA-LVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~-l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
.+-..+...+.++++.-|..+...+..+..... .....+++-. +.-...+.+..+...++.+|..|+..++..+.
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~- 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR- 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-
Confidence 344455555667888999988888777775433 2233444444 44445567788889999999999998887543
Q ss_pred CCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
.+...++|.|+..+.+....+|..+++++-.+.... .+..+...+..++.+.+|..+..+...+...
T Consensus 332 -------~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 332 -------KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred -------HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 567889999999999999999999999998887743 2345667777888999999999999999988
Q ss_pred HhhCcc--cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 249 IEVRPS--FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 249 ~~~~~~--~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
...... ....-+..++|.++....|.+.+||..|.+.+..+...
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 877652 34455678999999999999999999999998887654
No 108
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.56 E-value=0.0022 Score=53.69 Aligned_cols=133 Identities=16% Similarity=0.219 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc-cccCCCCCCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV-LDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVN 205 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~ 205 (438)
.+..+...+.+.+++.++..|-.|+..+..+++..+.+ +. .+-...+..+++.++.+ +..++..|+.++.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~--------~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILL--------SHGSQWLRALLSILEKPDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44566666777788888999999999999999988543 21 23466777788888765 5668899999999
Q ss_pred HHHcccc-------hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 206 QFIMLMP-------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 206 ~~~~~~~-------~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
.++.... +...++++.+++.+.++.++ ......+++++..++..+|..|+||..++-..+...
T Consensus 94 ~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 94 RLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 9887653 22356778888888888765 557789999999999999999999998876666543
No 109
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.006 Score=59.01 Aligned_cols=249 Identities=13% Similarity=0.091 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--c-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS--Q-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~--~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+++.+-|+...|++-++.--+++.-.|....-.+. . .|+++......|..- .+.....|+.|..+|-+.-.++-.+
T Consensus 258 n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 258 NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 57778888888888887743335555555555543 2 455543222222110 1566777777776665544332111
Q ss_pred C---CHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 86 M---SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 86 l---~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
+ +++ +-.++.+.+ |..+..+|..+.+-.....-..++..+...+.+-+...+..++.+++.+|-..
T Consensus 338 v~vcN~e--------vEsLIsd~N---r~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 338 VSVCNKE--------VESLISDEN---RTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred eeecChh--------HHHHhhccc---ccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 1 121 112223322 33344555555554322333444444444444444455556666666666666
Q ss_pred ccccccCCCCCCcchhhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchh-------hHHhH-----HHH-------
Q 013663 163 PQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSA-------LFVSM-----DQY------- 222 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~-------~~~~~-----~~l------- 222 (438)
|.. ...++..+...+. .+..+.+..++.++...+++.|+. +..++ +.+
T Consensus 407 p~k------------~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~i 474 (898)
T COG5240 407 PSK------------KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGI 474 (898)
T ss_pred cHH------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 642 1222222222221 233444444444444444444321 00000 111
Q ss_pred --------------HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHH
Q 013663 223 --------------LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (438)
Q Consensus 223 --------------l~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~ 283 (438)
+..+.+.+-=.+.-+|.+|+.+|.+++-...+.+.+ ..+...+-.++.|.+++||..|-
T Consensus 475 LG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAs 547 (898)
T COG5240 475 LGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRAS 547 (898)
T ss_pred hcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHH
Confidence 111111111123457888999998888655544322 34445556778889999998775
No 110
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.53 E-value=0.0033 Score=67.21 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=105.3
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~-~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
+.++..++++...+|.++-.|++.|+..++ .-.-|++...+...+.+....+|++|+..++..+-..++
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e---------- 888 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE---------- 888 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH----------
Confidence 456677788899999999999999999875 355688889999999999999999999999988776665
Q ss_pred cchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
...++...+...+.|+...||+.|++.+..++.-.|+. ..++.+.-.++....|.+..+++.++++|..+.
T Consensus 889 --~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 889 --LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred --HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 35677788889999999999999999999998876642 111223333333334444445566666555554
No 111
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.52 E-value=0.014 Score=56.17 Aligned_cols=207 Identities=14% Similarity=-0.019 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCc
Q 013663 27 PSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAAD 106 (438)
Q Consensus 27 ~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~ 106 (438)
++.. ++..|-..|.... .|..+..++..+. +.++++|..++..|... .. ......|+..+.+++
T Consensus 67 ~~~e-v~~~aa~al~~~~-~~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i--------~~---~~a~~~L~~~L~~~~ 130 (410)
T TIGR02270 67 DEPG-RVACAALALLAQE-DALDLRSVLAVLQ---AGPEGLCAGIQAALGWL--------GG---RQAEPWLEPLLAASE 130 (410)
T ss_pred CChh-HHHHHHHHHhccC-ChHHHHHHHHHhc---CCCHHHHHHHHHHHhcC--------Cc---hHHHHHHHHHhcCCC
Confidence 4455 6666555554332 3444677778776 56888999999888632 11 124456777888889
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHH
Q 013663 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (438)
Q Consensus 107 ~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (438)
+.||..+..+++..- .+-.+.+...+++.++.+|..|+.+++.+-. ....+.+.
T Consensus 131 p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------------------~~a~~~L~ 184 (410)
T TIGR02270 131 PPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR------------------RLSESTLR 184 (410)
T ss_pred hHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------------------ccchHHHH
Confidence 999987776666421 1234566666778899999999999987632 23445566
Q ss_pred HhccCCCHHHHHHHHHHHHHHHcccchhhHH------------------hH-----HHHHHHHHHhhCCCCHHHHHHHHH
Q 013663 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFV------------------SM-----DQYLQGLFLLSNDPSAEVRKLVCA 243 (438)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~------------------~~-----~~ll~~l~~~~~~~~~~~~~~a~~ 243 (438)
..+.+.++.||..|+.++..+-. +..... .+ +..+..|..++++ +.++..++.
T Consensus 185 ~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~ 260 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALR 260 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHH
Confidence 77999999999999988855421 110000 00 1223334444444 336777777
Q ss_pred HHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 244 ~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+++.+-. +..++.++..+.+ +.++..|-+.+..+.-
T Consensus 261 AlG~lg~----------p~av~~L~~~l~d--~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 261 AVGLVGD----------VEAAPWCLEAMRE--PPWARLAGEAFSLITG 296 (410)
T ss_pred HHHHcCC----------cchHHHHHHHhcC--cHHHHHHHHHHHHhhC
Confidence 7765443 3456666666654 3488888877777654
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.46 E-value=0.0013 Score=48.53 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHHHHHHh-ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 133 LQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 133 l~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
+|.|++.+ +++++.+|..++.+|+. +. ....++.+...++|+++.||..|+.+++.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~----~~--------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE----LG--------------DPEAIPALIELLKDEDPMVRRAAARALGRIG--- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC----CT--------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH----cC--------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 57888888 77899999999999872 11 3578899999999999999999999998652
Q ss_pred chhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Q 013663 212 PSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFN 246 (438)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~a~~~l~ 246 (438)
-+..++.+.+++.+ ++..+|..+.++|+
T Consensus 60 -------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12355556666654 45667888888764
No 113
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.42 E-value=0.00024 Score=40.95 Aligned_cols=31 Identities=42% Similarity=0.616 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcc
Q 013663 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 390 l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
++|.+.+++++++ |++|.+|..+||.++++|
T Consensus 1 llp~l~~~l~D~~---~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPS---PEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SS---HHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCC---HHHHHHHHHHHHHHHhhC
Confidence 5788889999998 999999999999999876
No 114
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.061 Score=54.34 Aligned_cols=273 Identities=16% Similarity=0.132 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhhc--CCcHHHHHHHHHhhc-cCC-CHHHHHHHHHHHHHHHHhh--------hccCCHhhHHHHHHHhh
Q 013663 32 DKSQIWQQLQQYSQ--FPDFNNYLAFILARA-EGK-SVEIRQAAGLLLKNNLRTA--------YKSMSPSNQQYIKSELL 99 (438)
Q Consensus 32 ~r~~A~~~L~~~~~--~p~~~~~l~~il~~~-~~~-~~~~R~~A~~~Lk~~i~~~--------w~~l~~~~~~~i~~~ll 99 (438)
+|--||.-+..+-. +.-.++.+...+.++ +.+ +.....+-+.++|..+-.. .+.++ -...+++.++
T Consensus 413 lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~d--F~~Wl~~~ll 490 (978)
T KOG1993|consen 413 LRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILD--FDKWLQEALL 490 (978)
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHhhC
Confidence 67777776665443 112334444544322 122 3333444555555544211 01111 1122333343
Q ss_pred hhhh---cCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 100 PCLG---AADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 100 ~~l~---~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
.-+. .....+||..+.+++.-+....+ +.-|-+-..+.+.++++ |..+|..+..++..++++.... . +-|
T Consensus 491 pEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~--~---dsF 565 (978)
T KOG1993|consen 491 PELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFS--E---DSF 565 (978)
T ss_pred HHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCC--h---hhh
Confidence 3333 24678899999999988865422 23344555666667776 6678899999999888876542 1 112
Q ss_pred cchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhh
Q 013663 175 ECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 175 ~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~a~~~l~~l~~~ 251 (438)
.++.+.++..+++.+.. +..+.|...+..++.++...++.+.|+...+++.+..+-. ..++-+|.+.+.++-.++..
T Consensus 566 lp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 566 LPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNA 645 (978)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 35567777777777765 4566788889999999888777666766667766666543 23456787888888888765
Q ss_pred Cccc---ccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhcc
Q 013663 252 RPSF---LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (438)
Q Consensus 252 ~~~~---~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 314 (438)
-+.. +.|++-.++++....-+-++--.-..++++|.++.... ..+.|-+-.++|.++..+
T Consensus 646 lg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~---~~l~p~ll~L~p~l~~~i 708 (978)
T KOG1993|consen 646 LGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS---QKLTPELLLLFPHLLYII 708 (978)
T ss_pred hccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc---cccCHHHHHHHHHHHHHH
Confidence 4433 33444344444433333334456678999999987752 223344444444444433
No 115
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.39 E-value=0.0067 Score=58.41 Aligned_cols=153 Identities=17% Similarity=0.051 Sum_probs=110.7
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~ 126 (438)
|..+..|...+.. ..++.++..|+..+.. |. ++ .....+++.|.++++.||..++.+++.|
T Consensus 53 ~~a~~~L~~aL~~--d~~~ev~~~aa~al~~-----~~--~~----~~~~~L~~~L~d~~~~vr~aaa~ALg~i------ 113 (410)
T TIGR02270 53 KAATELLVSALAE--ADEPGRVACAALALLA-----QE--DA----LDLRSVLAVLQAGPEGLCAGIQAALGWL------ 113 (410)
T ss_pred HhHHHHHHHHHhh--CCChhHHHHHHHHHhc-----cC--Ch----HHHHHHHHHhcCCCHHHHHHHHHHHhcC------
Confidence 5667777777754 5667888776665532 11 11 1256778889899999999999999865
Q ss_pred CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
..+...+.|...+.+.++.+|..++..++..- ..-.+.+...++|+++.||..|+++++.
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------------------~~~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------------------HDPGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------------------cChHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 34677888888899899999998887775511 1123567778889999999999999987
Q ss_pred HHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
+-.. ..++.|...+.+.++.||..++..+..+
T Consensus 174 l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 174 LPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 6432 1222244457888999999999887655
No 116
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.057 Score=51.64 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~ 208 (438)
.+++-.+.+...+++...|..|+.+|+......|.... ++...++..++.++-| .+.+|...|+++|..+.
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~--------th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR--------THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH--------HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 45555566666677888999999999999998887643 4567777777766655 47889999999998877
Q ss_pred cccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 209 MLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 209 ~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
.... ..+..++-.+--.+..+..+.+++.|.+++..++.++....
T Consensus 329 ~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 329 EKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 6553 22333332333334445667778999999999999987654
No 117
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.38 E-value=0.073 Score=49.48 Aligned_cols=183 Identities=17% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcc-CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc-----cCchHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-----IAGWLELLQA 135 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~-----~~~w~~ll~~ 135 (438)
......|..|...+.+.+.+++.. .-.+.+..+...+++.++.+...-+..++.+++-++-..+ ..-+..+.|.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~ 133 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPV 133 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Confidence 456889999999999888775421 1112344556667777766655566677888888876633 2446788899
Q ss_pred HHHHhccCC--hhhHhHHHHHHHHHHhccccccccCCCCCCcchhh---hHHHHHHHh--cc-C---------CCHHHHH
Q 013663 136 LVTCLDSND--INHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN---IFLPRLLQF--FQ-S---------PHTSLRK 198 (438)
Q Consensus 136 l~~~l~~~~--~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~---~il~~l~~~--l~-~---------~~~~vr~ 198 (438)
|...+.++. +..|..++.+|+-++-...... .... ..+..++.. .. + +++.+..
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~---------~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDE---------EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh---------hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 988888753 4566777777766544333211 1122 233322221 11 1 2357889
Q ss_pred HHHHHHHHHHcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 199 LSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 199 ~al~~l~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
+|+.+-+-++..+|. .+...+...++.+..++..++.+||..|-+++.-+.+...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999998888888875 3445567778888888888899999999999887766543
No 118
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.37 E-value=0.0002 Score=47.80 Aligned_cols=54 Identities=28% Similarity=0.350 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
|.+|..++.+|+.++...++.+.++.+.+++.+...++|++++||..|+..++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999876653
No 119
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.36 E-value=0.063 Score=50.81 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=107.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHH
Q 013663 18 CRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (438)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ 97 (438)
..++..+.+++.. +|..|...+..+.. ...+..+...+. +.++.+|..|+..|.+. -+++.. ..
T Consensus 46 ~~~~~~l~~~~~~-vr~~aa~~l~~~~~-~~av~~l~~~l~---d~~~~vr~~a~~aLg~~-------~~~~a~----~~ 109 (335)
T COG1413 46 DELLKLLEDEDLL-VRLSAAVALGELGS-EEAVPLLRELLS---DEDPRVRDAAADALGEL-------GDPEAV----PP 109 (335)
T ss_pred HHHHHHHcCCCHH-HHHHHHHHHhhhch-HHHHHHHHHHhc---CCCHHHHHHHHHHHHcc-------CChhHH----HH
Confidence 3334444456666 77777777555544 345565666665 45668888887766543 122222 23
Q ss_pred hhhhhh-cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCC------------hhhHhHHHHHHHHHHhcccc
Q 013663 98 LLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND------------INHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 98 ll~~l~-~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~------------~~~r~~al~~l~~l~~~~~~ 164 (438)
++..+. +++..||..++.+++.+-. +..+..++..+++.. ..+|..+...++.+
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~~-------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~------ 176 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLGD-------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL------ 176 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcCc-------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc------
Confidence 344454 5788888888888876643 222444444444432 12344444433221
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~ 244 (438)
......+.+...+.+....||..|..+++.+.... ..+...+...+.+++..+|..++..
T Consensus 177 ------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~ 236 (335)
T COG1413 177 ------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLA 236 (335)
T ss_pred ------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 12445567778888888888888888888776543 2233455666778888888888777
Q ss_pred HHHHH
Q 013663 245 FNLLI 249 (438)
Q Consensus 245 l~~l~ 249 (438)
++.+-
T Consensus 237 l~~~~ 241 (335)
T COG1413 237 LGEIG 241 (335)
T ss_pred hcccC
Confidence 76543
No 120
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.048 Score=54.38 Aligned_cols=223 Identities=17% Similarity=0.111 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC--CHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHh
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM--SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l--~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~ 123 (438)
+.+|..++-.++.--...+..-|- ..++++++.. ..+. ..+..+++...++...-.++..||...+++|+.+...
T Consensus 39 ~eeflr~vn~il~vkKresi~dRI--l~fla~fv~s-l~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~ 115 (892)
T KOG2025|consen 39 SEEFLRVVNYILLVKKRESIPDRI--LSFLARFVES-LPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE 115 (892)
T ss_pred HHHHHHHHHHheeeccCCCcHHHH--HHHHHHHHHh-hhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc
Confidence 345665555554321122222232 2333344433 2233 3345566666777777778999999999999998763
Q ss_pred h---ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHH
Q 013663 124 G---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKL 199 (438)
Q Consensus 124 ~---~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~ 199 (438)
. ...-+..+...+...+.+..|.+|.-|+.+|.++=+.-.+ . -..+...+...+ +||+++||.+
T Consensus 116 ~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---e---------e~~v~n~l~~liqnDpS~EVRRa 183 (892)
T KOG2025|consen 116 NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---E---------ECPVVNLLKDLIQNDPSDEVRRA 183 (892)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC---C---------cccHHHHHHHHHhcCCcHHHHHH
Confidence 2 2345677888888888888999999999999887531111 1 122333444444 5799999999
Q ss_pred HHHHHHHHHcccchh---------------hHHhHH----------HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc
Q 013663 200 SLGSVNQFIMLMPSA---------------LFVSMD----------QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 200 al~~l~~~~~~~~~~---------------~~~~~~----------~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
|+.++..=-...|-. +...++ .-+..+-..+.|.+..++.++.+.+..-.-.+.
T Consensus 184 aLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~- 262 (892)
T KOG2025|consen 184 ALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS- 262 (892)
T ss_pred HHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-
Confidence 998875322222210 000011 112222233445555666665555443221111
Q ss_pred cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 255 ~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
-..+++++-+.--+.+.+|+..+++.+-..
T Consensus 263 -----dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 263 -----DGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred -----cccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 124555554443345668999999877773
No 121
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.33 E-value=0.12 Score=48.82 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCc
Q 013663 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG 128 (438)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~ 128 (438)
.+..+...+. +.+..+|..|+..++.. . -......+...+.+.++.||..++.+++.+-
T Consensus 44 ~~~~~~~~l~---~~~~~vr~~aa~~l~~~--------~---~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------- 102 (335)
T COG1413 44 AADELLKLLE---DEDLLVRLSAAVALGEL--------G---SEEAVPLLRELLSDEDPRVRDAAADALGELG------- 102 (335)
T ss_pred hHHHHHHHHc---CCCHHHHHHHHHHHhhh--------c---hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------
Confidence 4555666665 44899999999886542 1 1233456667788889999999999777553
Q ss_pred hHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCC------------HH
Q 013663 129 WLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH------------TS 195 (438)
Q Consensus 129 w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~------------~~ 195 (438)
-+..++.++..+. +.+..+|..+..+|+.+-. ...+..++..+++.. ..
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~ 164 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD------------------ERALDPLLEALQDEDSGSAAAALDAALLD 164 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc------------------hhhhHHHHHHhccchhhhhhhhccchHHH
Confidence 2577777777777 5888999999999976522 112444555555543 24
Q ss_pred HHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCC
Q 013663 196 LRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD 275 (438)
Q Consensus 196 vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 275 (438)
+|..+...++.+-.- .....+...+.+++..+|..+...+..+.... ..+.+.+...+.+.+
T Consensus 165 ~r~~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 165 VRAAAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC
Confidence 666666666554321 23344555667777889999999999887643 456677777888899
Q ss_pred hHHHhHHHHHHHHhh
Q 013663 276 DDVALEACEFWHSYF 290 (438)
Q Consensus 276 ~~v~~~a~~~~~~~~ 290 (438)
..+|..++..++.+.
T Consensus 227 ~~vr~~~~~~l~~~~ 241 (335)
T COG1413 227 LEVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHHHHhcccC
Confidence 999999987666543
No 122
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.25 Score=50.10 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=41.9
Q ss_pred chhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHh
Q 013663 364 VWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (438)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~ 420 (438)
+..+|.+|..++..++ .++ ...+.+.-.+..++.+.| -.+|+.|-+.+..+-
T Consensus 479 n~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~D---devRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSD---DEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCch---HHHHHHHHHHHHHhh
Confidence 3577999999999998 555 445667778888998888 689999999888877
No 123
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.29 E-value=0.0005 Score=39.59 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=26.6
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
++|.++++++|++++||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999998764
No 124
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.24 Score=50.93 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=114.6
Q ss_pred HHHHHHHHH-HHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHH
Q 013663 32 DKSQIWQQL-QQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (438)
Q Consensus 32 ~r~~A~~~L-~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr 110 (438)
.|..|-+.+ .+...-.+...++..++..-.+.+.++|.+.-..|.+.-+ ..|+..-...+.+.+-+.++++.+|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak-----~~P~~~lLavNti~kDl~d~N~~iR 109 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAK-----LKPELALLAVNTIQKDLQDPNEEIR 109 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhccCCCHHHH
Confidence 566665554 5555544455556667665447888888888777776433 3344444455778888899999999
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc
Q 013663 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (438)
Q Consensus 111 ~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (438)
..+-..++.+=. +.-|+.+++.+.+++.++++.+|..|..++..+.+.-+..+. -....-.+...+.
T Consensus 110 ~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~----------~~g~~~~l~~l~~ 176 (757)
T COG5096 110 GFALRTLSLLRV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH----------ELGLIDILKELVA 176 (757)
T ss_pred HHHHHHHHhcCh---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh----------cccHHHHHHHHhh
Confidence 998888776633 356889999999999999999999999999998765444321 1224455666778
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q 013663 191 SPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~ 209 (438)
|+++.|...|+.++..+-.
T Consensus 177 D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 177 DSDPIVIANALASLAEIDP 195 (757)
T ss_pred CCCchHHHHHHHHHHHhch
Confidence 9999999999988877644
No 125
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.25 E-value=0.028 Score=52.13 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=100.9
Q ss_pred hHHHHHHHH-HHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 129 WLELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 129 w~~ll~~l~-~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
..+++..++ ..+++.++.+|+.|+.||+-.|---.. ...+.++.+.+.++..+..||..|++++..+
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~------------~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dl 91 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE------------LAKEHLPLFLQALQKDDEEVKITALKALFDL 91 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 347776665 677888999999999999887643332 2466678888888777999999999999998
Q ss_pred Hcccchh-hH--------HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHH-h---hhhcCC
Q 013663 208 IMLMPSA-LF--------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYM-L---QVNKDT 274 (438)
Q Consensus 208 ~~~~~~~-~~--------~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~-~---~~~~~~ 274 (438)
+...+.. +. .....++..+...+.+.+++++..+++.++++.-... +.+ .+.++..+ + .-....
T Consensus 92 l~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~--i~~-~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 92 LLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR--ISD-PPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred HHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC--CCc-HHHHHHHHHHHHcCcccCC
Confidence 8765421 11 1123577778788877788999999999999885421 111 12333322 2 222234
Q ss_pred ChHHHhHHHHHHHHhhcc
Q 013663 275 DDDVALEACEFWHSYFEA 292 (438)
Q Consensus 275 ~~~v~~~a~~~~~~~~~~ 292 (438)
+..+|+.---|+-.++..
T Consensus 169 ~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYASS 186 (298)
T ss_pred cHHHHHHHHHHHHHHHcC
Confidence 567776555677777764
No 126
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.3 Score=49.98 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=116.8
Q ss_pred HHHHHHHhhcCC-CCHHHHHHHHHHHHHhh---c------CC--cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 16 EICRLLEQQISP-SSTADKSQIWQQLQQYS---Q------FP--DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 16 ~l~~~l~~~~s~-d~~~~r~~A~~~L~~~~---~------~p--~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
.+.++|+++++. |.. .+-+|-.+|=+.. + .| .+++.|..+|.. ..+.++...|+-.|.+...
T Consensus 168 k~kkLL~gL~~~~Des-~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E~n~DIMl~AcRaltyl~e--- 241 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDES-QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--EHNFDIMLLACRALTYLCE--- 241 (1051)
T ss_pred HHHHHHHhccccCChH-HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHh---
Confidence 567778888776 655 5555555554332 1 12 367788888885 6779999999977766654
Q ss_pred ccCCHhhHHHHH----HHhhhhhhc-CcHHHHHHHHHHHHHHHHhhccCch-HHHHHHHHHHhccCChhhHhHHHHHHHH
Q 013663 84 KSMSPSNQQYIK----SELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGW-LELLQALVTCLDSNDINHMEGAMDALSK 157 (438)
Q Consensus 84 ~~l~~~~~~~i~----~~ll~~l~~-~~~~vr~~~a~~la~i~~~~~~~~w-~~ll~~l~~~l~~~~~~~r~~al~~l~~ 157 (438)
.+|...-..+. ..+++-|.. +--.|..+.-+++-.|.+..+..-. ..-+..++..+.=-+...++.|+-+...
T Consensus 242 -vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 242 -VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAAN 320 (1051)
T ss_pred -hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333 223333322 3445677777888888876543211 1223333334332345667789999999
Q ss_pred HHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
+|+.+++.- + .++-+.+|.|-+.|+..+.++-..++-|+..++...
T Consensus 321 ~Cksi~sd~---f-----~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 321 CCKSIRSDE---F-----HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHhcCCCcc---c-----hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 999887631 1 357788999999999999999899999999988754
No 127
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.32 Score=49.12 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=33.2
Q ss_pred hhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 102 l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
|..|+..||...-..+.++= -+.-...++|.+.+++......+|+.|+.++.+|.+.
T Consensus 108 LQHPNEyiRG~TLRFLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred ccCchHhhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 44566666666555544332 2233345666666666666666777776666666654
No 128
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.15 Score=51.07 Aligned_cols=225 Identities=14% Similarity=0.076 Sum_probs=134.8
Q ss_pred HHHHHHHHhhc----C-CCCHHHHHHHHHHHHHhhcC-C--cHHH-HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 15 NEICRLLEQQI----S-PSSTADKSQIWQQLQQYSQF-P--DFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 15 ~~l~~~l~~~~----s-~d~~~~r~~A~~~L~~~~~~-p--~~~~-~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
.++..+++.++ . +..+-+.+-+..+.+.+.+. + +++. .+-++|...++.+..+|+=+..+|...+.. -..
T Consensus 40 eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~e 118 (892)
T KOG2025|consen 40 EEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAE 118 (892)
T ss_pred HHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccc
Confidence 45666666432 1 22221455556666666652 2 3544 455667666789999999999999877763 346
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhcccc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
+++...+.+...++.-+.+..+.||..+..+++.+=. ++.+.--+....+...++ ++++.+|.+|+.++.-=-...|.
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~ 197 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPC 197 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchh
Confidence 8999999999999999999999999999999998743 332222234444444454 46789999998776322112221
Q ss_pred cccc--CCCCC---------C------cchhhhHHHHHHHhccCCCHHHHHHHHHHHHH-HHcccchhhHHhHHHHHHHH
Q 013663 165 VLDS--DVPGL---------A------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ-FIMLMPSALFVSMDQYLQGL 226 (438)
Q Consensus 165 ~~~~--~~~~~---------~------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~-~~~~~~~~~~~~~~~ll~~l 226 (438)
.++. ++.+. + ......-...+-.+++|-+..||.++.+.+.. |+.+. ..+ ++..|
T Consensus 198 IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~----dgn---i~ElL 270 (892)
T KOG2025|consen 198 IVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS----DGN---ILELL 270 (892)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc----ccc---HHHHH
Confidence 1110 00000 0 01123334445667777788888887776543 55443 223 33333
Q ss_pred HHhhCCCCHHHHHHHHHHHHHH
Q 013663 227 FLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~l~~l 248 (438)
-.+-.....+++..++++|-..
T Consensus 271 ~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 271 ERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHhccccchHHHHHHHHHHHHH
Confidence 3333334457888888887765
No 129
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.0077 Score=63.06 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhh---c-cCchHHHHHHHHHHhcc----CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 112 TVGTIVSVVVQLG---G-IAGWLELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 112 ~~a~~la~i~~~~---~-~~~w~~ll~~l~~~l~~----~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
..+..+..|+..+ | ..-...+.|.+.+.|++ ++|..+.+|..+|+.++-....+ ...-+|
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f------------ces~l~ 963 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF------------CESHLP 963 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH------------HHHHHH
Confidence 4677888888765 4 34567899999999965 36889999999999987655543 455678
Q ss_pred HHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHH
Q 013663 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (438)
Q Consensus 184 ~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 262 (438)
.|+..+. ++++-+|..++-+++.++-..|.-+.+ .-+.++..+.|.++.+|+.|+-.+..++-+.-=..+.++..
T Consensus 964 llftimeksp~p~IRsN~VvalgDlav~fpnlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e 1039 (1251)
T KOG0414|consen 964 LLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE 1039 (1251)
T ss_pred HHHHHHhcCCCceeeecchheccchhhhcccccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH
Confidence 8888887 689999999999999887776654443 44566777889999999999999998886543334444443
Q ss_pred HHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 263 li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
+..++.|++++|+..|=.|...++..
T Consensus 1040 ----MA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1040 ----MALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ----HHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 45567888999999999888888765
No 130
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.16 E-value=0.024 Score=46.51 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=90.1
Q ss_pred HHHHHhhhhhhcC--cHHHHHHHHHHHHHHHHhh---ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHH-hcccccc
Q 013663 93 YIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQVL 166 (438)
Q Consensus 93 ~i~~~ll~~l~~~--~~~vr~~~a~~la~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~-~~~~~~~ 166 (438)
.||+.|+.+|..+ ....-+.++.+++.++... ..+.|+++...+.... .+++ ..|+.++..+. ....+.
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ef- 77 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEF- 77 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhH-
Confidence 5788999999742 3344455555555555432 5689999997776543 2222 45777776654 222222
Q ss_pred ccCCCCCCcchhhhHHHHHHHhccCC---CHHHHHHHHH-HHHHHHcccch-----hhHHhHHHHHHHHHHhhCCCCH-H
Q 013663 167 DSDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLG-SVNQFIMLMPS-----ALFVSMDQYLQGLFLLSNDPSA-E 236 (438)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vr~~al~-~l~~~~~~~~~-----~~~~~~~~ll~~l~~~~~~~~~-~ 236 (438)
+.+.+..+++.+.+.+.+| +.+....|+. ++..++..+.. .+...++.++..+-.+.+.+.+ .
T Consensus 78 -------l~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 78 -------LIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred -------HHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 2356788999999999887 4444566664 44556665532 2233344556666666655555 7
Q ss_pred HHHHHHHHHHHHHhh
Q 013663 237 VRKLVCAAFNLLIEV 251 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~ 251 (438)
.-..+++-+-.+++.
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888777754
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.11 E-value=0.034 Score=58.79 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhh-----hc-----CcHHHHHHHHHHHHHHHHhhccCchHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GA-----ADRHIRSTVGTIVSVVVQLGGIAGWLE 131 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l-----~~-----~~~~vr~~~a~~la~i~~~~~~~~w~~ 131 (438)
+..-.+|+-|++.++...+.+...++-+..+.+...++..+ ++ --..||.+.|++++...++.......+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~ 167 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKE 167 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHH
Confidence 67889999999999999998888877766665555444443 22 145789999999999999886667778
Q ss_pred HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
.+..+.+.+..+++..|++++..+.+......+.+ ....+.+++.+..++.|.+..|+..|.+.+.......
T Consensus 168 ~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l--------~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 168 TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL--------FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 88888888888889999999999888766222211 1346778899999999999999999999988776554
No 132
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.24 Score=50.11 Aligned_cols=259 Identities=13% Similarity=0.083 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhc-------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 12 QGFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQ-------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 12 ~~~~~l~~~l~~~~s~-d~~~~r~~A~~~L~~~~~-------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
.....+..-|..++.. ++- +|+.|.....++-. ..+++..|..++. +.++.+-..|.-.|..+...+=
T Consensus 117 ~i~ey~~~Pl~~~l~d~~~y-vRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 117 KITEYLCDPLLKCLKDDDPY-VRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHHHHhccCCChh-HHHHHHHHHHHhhcCChhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHHHHhCC
Confidence 3344444444444444 445 88888888887663 2345666666665 5677777777777766655432
Q ss_pred ccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC--chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~--~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
+....+.-..+-+.++..+.+-..- +-+.++-.++...+.+ .-.+++..+...++..++.+..++..++.+..+.
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 2112222223334555555542111 1233444444443332 3345666777777777777777788887777766
Q ss_pred cccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh--------------------------
Q 013663 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-------------------------- 215 (438)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-------------------------- 215 (438)
..... ......+.+.+..++...+ ++.-.|++-++-++...|+.+
T Consensus 270 ~~~~~--------~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 270 LKQVN--------ELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHH--------HHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHH
Confidence 65511 1223445555555555554 666566665555554444311
Q ss_pred ----HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 216 ----FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 216 ----~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
..++++++.-+.....+-|.+.-+.++++++.++....+. ..++..++..++-.-+.+.+.++-.+..+.+
T Consensus 341 ~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 341 ELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred HHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 1122333333433344455666677777777777655443 4455555555554444555555555555444
No 133
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.08 E-value=0.0079 Score=50.74 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHh-hc---cCchHHHHHHH-----------HH-HhccCChhhHhHHHHHHHHHHhccccccc--cC
Q 013663 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL-----------VT-CLDSNDINHMEGAMDALSKICEDIPQVLD--SD 169 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~-~~---~~~w~~ll~~l-----------~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~~--~~ 169 (438)
+||..+..++..+++. ++ -..|+.++|.- +. .+.|+++.+|.+|+.++..+.+....++. ++
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4789999999999998 43 37899999875 22 23467789999999999999998765432 00
Q ss_pred C--C-CCCc-------chhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccc-hhh-HHhHHHHHHHHHHhhCCCCHH
Q 013663 170 V--P-GLAE-------CPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP-SAL-FVSMDQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 170 ~--~-~~~~-------~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~-~~~-~~~~~~ll~~l~~~~~~~~~~ 236 (438)
. + .-|. ..+.++-..+...++. .+..+....+||+..++...| ..+ .+.+..++..+...+.+.|..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 0 0111 1122222334455554 367788899999999998876 112 234556777777777778889
Q ss_pred HHHHHHHHHHHHHhhC
Q 013663 237 VRKLVCAAFNLLIEVR 252 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~ 252 (438)
++..++.+++-++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999888654
No 134
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.047 Score=54.36 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=126.6
Q ss_pred hhhccCCHhhHHHHHHHhhhhhh-----cCcHHHHHHHHHHHHHHHHhh-ccCchHHHH-----HHHHHHhccCChhhHh
Q 013663 81 TAYKSMSPSNQQYIKSELLPCLG-----AADRHIRSTVGTIVSVVVQLG-GIAGWLELL-----QALVTCLDSNDINHME 149 (438)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~-----~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll-----~~l~~~l~~~~~~~r~ 149 (438)
+.|+..+-+..+.|-+-.++.+- -+...+..+.-++++.++..- -.+.-.+++ |-+...++..|..+|.
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 45887666667777666666542 233344555555666555322 112233333 5567777888889999
Q ss_pred HHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH----HcccchhhHHhHHHHHHH
Q 013663 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF----IMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 150 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~----~~~~~~~~~~~~~~ll~~ 225 (438)
.|+..+-.+.--.++... ..-++..+..=+..+..++.|+-+.||..|++.+..+ ...+|... +..++..
T Consensus 193 nAa~lf~~~fP~~dpd~~---~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i---~~~ll~k 266 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLH---AEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI---LIDLLKK 266 (1005)
T ss_pred hHHHHHHHhccCCCCCcc---HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHH
Confidence 998887554332222110 0011122333345677889999999999887766544 44455432 2234444
Q ss_pred HHH-hhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 226 LFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 226 l~~-~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
++. +..|...+||...++++..++.+. .-.+.++.++|.+-..+.|+.+.||..+.+.+..+-..
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 433 344666789999999999888652 22356778888776778899999999999888877554
No 135
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.99 E-value=0.12 Score=47.90 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=87.5
Q ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc-ccCC
Q 013663 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL-DSDV 170 (438)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~-~~~~ 170 (438)
..+.+.++.++.+.++.||..+-.++|-.+-.+. ..-.+.++.+.+.++.++..++..|+.++..+.-..+... ....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4555666788999999999999999998887653 2335678888888877788999999999998887766432 1110
Q ss_pred CCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
.+-.......++..+.+.+.+.+++++..|++++..++-.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 0000123466888889999999999999999999987653
No 136
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.98 E-value=0.014 Score=44.84 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHh
Q 013663 233 PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (438)
Q Consensus 233 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 312 (438)
.+...|+.+++++..+++..++.+....++++-++...+.. ++++..|++.|..+...- ..+.+.+.+++++..+++
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L-~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTL-DEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH
Confidence 45678999999999999988888888888888777777654 499999999999998862 236688888888888877
Q ss_pred cc
Q 013663 313 NM 314 (438)
Q Consensus 313 ~l 314 (438)
++
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 65
No 137
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.97 E-value=0.03 Score=46.87 Aligned_cols=132 Identities=17% Similarity=0.280 Sum_probs=97.4
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc-chhhHHhHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhh---
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEV--- 251 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~-~~~~~~a~~~l~~l~~~--- 251 (438)
.+..+...+.+.+++.+++-|-.++..+...++.. ++.|..+-..++..+...++.++ +.++..++.++..+...
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 56778888999999999999999999999988886 45555555667777777776544 57888999998888754
Q ss_pred Ccc----cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHh
Q 013663 252 RPS----FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (438)
Q Consensus 252 ~~~----~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 312 (438)
+|+ ...|+++.+++.+++..++ ..+...+++.+.++... .+..++|+..++-..++.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~--~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH--HPTTFRPFANKIESALLS 162 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH--CCccccchHHHHHHHHHH
Confidence 343 4568889999999988765 56777888888887664 223456666665554443
No 138
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.94 E-value=0.0059 Score=51.11 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=79.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc-cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH---hhCc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI---EVRP 253 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~---~~~~ 253 (438)
....+|.|+.++......-+-.|.+.+..++.. .++.+.+.+++++..+-..++..++++...+++++..++ ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467899999999998888888999999999888 667788999999999999999899999999999999994 4556
Q ss_pred ccccccHHHHHHHHhh
Q 013663 254 SFLEPHLRNLFEYMLQ 269 (438)
Q Consensus 254 ~~~~~~~~~li~~~~~ 269 (438)
+.+.||+.+++|.+--
T Consensus 116 ~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNL 131 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888999999887653
No 139
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.24 Score=50.82 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCC-----hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH
Q 013663 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (438)
Q Consensus 107 ~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~-----~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (438)
..-|+..+..+-......+.+...-++..+-+.+.+++ ..+.+..+.++..+.++++.. ...-
T Consensus 438 ~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t------------~~~~ 505 (982)
T KOG2022|consen 438 ESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET------------ESTW 505 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc------------hhHH
Confidence 34466655555544444343333445555666666554 567788888898888887763 2334
Q ss_pred HHHHHHhccC-----CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 182 LPRLLQFFQS-----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 182 l~~l~~~l~~-----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
+|.+++..-. .+++.-..+...++++..|..+.- .+++..++.+++.+.. ++.-.++...+.++++.+++.+
T Consensus 506 i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L 582 (982)
T KOG2022|consen 506 IPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESL 582 (982)
T ss_pred HHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhC
Confidence 6666665533 367777778888888777763321 1234455555555543 4455667777999999999999
Q ss_pred cccHHHHHHHHhhhhcC--CChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccC
Q 013663 257 EPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 257 ~~~~~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
.||...++.++...+.. -.+..|...+..++-+...- -.+.+..|+..++..++..+.
T Consensus 583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHHHH
Confidence 99999999988776432 12344444444444433221 134556677776666655443
No 140
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.044 Score=54.83 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~ 141 (438)
+.+|-.|......+ .+.+.-. ..-..||..|--..++.+..|||++.-+|+-+.-.+ |+.+|..++.+.
T Consensus 530 dkdpilR~~Gm~t~--alAy~GT----gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLs 598 (929)
T KOG2062|consen 530 DKDPILRYGGMYTL--ALAYVGT----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLS 598 (929)
T ss_pred CCchhhhhhhHHHH--HHHHhcc----CchhhHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHh
Confidence 45777776443332 2332211 111234433333367889999999988888776544 566666666665
Q ss_pred -cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH
Q 013663 142 -SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (438)
Q Consensus 142 -~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (438)
+.|+.+|.++..+|+-.|-.-+. ...+..+-....|+..-||+.|+-++.-+.....+...+.+.
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG~--------------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTGL--------------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCCc--------------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 46899999999999988764442 445555666677888999999999998877665555555555
Q ss_pred HHHHHHHHhhCCC
Q 013663 221 QYLQGLFLLSNDP 233 (438)
Q Consensus 221 ~ll~~l~~~~~~~ 233 (438)
.+.+.+.+.+.+.
T Consensus 665 ~frk~l~kvI~dK 677 (929)
T KOG2062|consen 665 GFRKQLEKVINDK 677 (929)
T ss_pred HHHHHHHHHhhhh
Confidence 5655555555543
No 141
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.88 E-value=0.32 Score=43.95 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=105.2
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHhhccC-----chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 100 PCLGAADRHIRSTVGTIVSVVVQLGGIA-----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 100 ~~l~~~~~~vr~~~a~~la~i~~~~~~~-----~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
..|.++++.+|.++-..++.+....+++ +-.-++.+....+. |......++..+..+.+. ... .
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~-~------- 74 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF-S------- 74 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC-C-------
Confidence 4567789999999999999988776532 33446666666664 444555568888777732 221 1
Q ss_pred cchhhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhh
Q 013663 175 ECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 175 ~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~ 251 (438)
......++..+++.... -....|..+++.+..++......+...-..++..+++.+. ..||.--..+++.+..++..
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 12345666666664443 3567899999999988877654443333466777776664 56788888899988888877
Q ss_pred CcccccccHHHHHHHHhh
Q 013663 252 RPSFLEPHLRNLFEYMLQ 269 (438)
Q Consensus 252 ~~~~~~~~~~~li~~~~~ 269 (438)
++ +.++.+++++.+.-
T Consensus 155 ~~--~~~~~e~lFd~~~c 170 (262)
T PF14500_consen 155 FD--ISEFAEDLFDVFSC 170 (262)
T ss_pred cc--cchhHHHHHHHhhh
Confidence 66 36777777777643
No 142
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.88 E-value=0.091 Score=51.01 Aligned_cols=234 Identities=18% Similarity=0.206 Sum_probs=140.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhh-cCCcH----HHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDF----NNYLAFILAR--AEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~-~~p~~----~~~l~~il~~--~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~ 88 (438)
=+.+++..+.|+|.. .|......|..+- +.++. ...+.+++.. .++....-=.-.+.++...++..=..+.+
T Consensus 134 fi~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 134 FIKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 366677777888888 8888888887744 33332 2233333331 01222222223445555555432224667
Q ss_pred hhHHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
+-+..+...++.+...+ -......++.++..++..++ ..-..++..++...--.+..-...-+.-+..+++.++..-
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~- 290 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE- 290 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH-
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH-
Confidence 77888888888888765 45557888999999988763 2334566666666655666666667777888888776531
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH--HHcccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAA 244 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~ 244 (438)
+......++..+..++++++..|...|+....+ ++..+.+.-...++.+++.+.+..+ +=+..+|..+..+
T Consensus 291 ------f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~v 364 (409)
T PF01603_consen 291 ------FQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNV 364 (409)
T ss_dssp ------HHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 123466778888899999999999888876643 2332222222233344444444332 2245799999999
Q ss_pred HHHHHhhCcccccc
Q 013663 245 FNLLIEVRPSFLEP 258 (438)
Q Consensus 245 l~~l~~~~~~~~~~ 258 (438)
+..+.+..+..|..
T Consensus 365 l~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 365 LKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHTTSHHHHHH
T ss_pred HHHHHHhCHHHHHH
Confidence 99888877766543
No 143
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.84 E-value=0.024 Score=47.83 Aligned_cols=139 Identities=13% Similarity=0.170 Sum_probs=89.4
Q ss_pred hHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH------------HHHHHhccCCCHHHHHHHHHHHHHHHcccchh
Q 013663 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL------------PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (438)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il------------~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (438)
+|.+|+.+|+.+++..+...- ..++..++ +.+.-.+.|+++++|.+|+.++..+++.....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l-------~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~ 74 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL-------FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF 74 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee-------HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH
Confidence 688999999999998665311 01222222 22334557899999999999999888764211
Q ss_pred -------------h---HHhHHHHH----HHHHHhhC-CCCHHHHHHHHHHHHHHHhhCcc-ccc-ccHHHHHHHHhhhh
Q 013663 215 -------------L---FVSMDQYL----QGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS-FLE-PHLRNLFEYMLQVN 271 (438)
Q Consensus 215 -------------~---~~~~~~ll----~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~-~~~-~~~~~li~~~~~~~ 271 (438)
| ...+..++ ..|...++ ..+..+..++++|+..++...|. .+. .+++.++..+...+
T Consensus 75 L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l 154 (182)
T PF13251_consen 75 LAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLL 154 (182)
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHH
Confidence 1 11122222 33333344 34567888999999999987653 333 23455555555566
Q ss_pred cCCChHHHhHHHHHHHHhhcc
Q 013663 272 KDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 272 ~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+.|.+++..++.+++.+...
T Consensus 155 ~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 155 RHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred hcCCCcHHHHHHHHHHHHHcC
Confidence 778899999998888877654
No 144
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.83 E-value=0.24 Score=48.56 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC----cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p----~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~ 88 (438)
.+....++++..+.+-.. -||. -..|..++... +|...+-.+|.--.+....-|- ..+|++++.+.....+.
T Consensus 9 ~~~s~~~if~k~Q~s~aG-hrk~-~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpe 84 (885)
T COG5218 9 SLESMQLIFNKIQQSSAG-HRKS-LAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPE 84 (885)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHH-HHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChh
Confidence 444555566665555333 4443 34444444433 3444444455432233444443 56677888765444433
Q ss_pred --hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccc
Q 013663 89 --SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 89 --~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~---~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (438)
+..+.+...++..+.+++..||...++++|.+...-.+ .-+..++..+...+-+-.+.+|.-|+.+|.++-+.-.
T Consensus 85 g~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 85 GEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 23344445566666678999999999999998865432 3356677777777777788999999999987754332
Q ss_pred cccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHHHHHHH
Q 013663 164 QVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSV 204 (438)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l 204 (438)
.+ -+.+...+...+ +||+.+||.+|+--+
T Consensus 165 ne------------en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NE------------ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred Ch------------HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 21 123333444444 578999999987544
No 145
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.14 Score=53.37 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhhc-C---------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc---CCHhhHH-HHHHH-
Q 013663 33 KSQIWQQLQQYSQ-F---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQQ-YIKSE- 97 (438)
Q Consensus 33 r~~A~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~---l~~~~~~-~i~~~- 97 (438)
|-.|-.-|.+|.. - =+.+++.+.+|. +.-.+.|. .+...|.+ +++..+. .+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ---S~a~ELrp--------iLVFIWAKILAvD~SCQ~dLvKe~g 555 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ---SSARELRP--------ILVFIWAKILAVDPSCQADLVKENG 555 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc---cchHhhhh--------hHHHHHHHHHhcCchhHHHHHhccC
Confidence 5556666666653 1 234555555554 33344443 33344544 3555444 44553
Q ss_pred ---hhhhhhc-C--cHHHHHHHHHHHHHHHHhhccCc----hHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhcccccc
Q 013663 98 ---LLPCLGA-A--DRHIRSTVGTIVSVVVQLGGIAG----WLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 98 ---ll~~l~~-~--~~~vr~~~a~~la~i~~~~~~~~----w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~ 166 (438)
.++.+.. + ++.-|..+|.+||.|+.....++ =.+++..-+..+.++ .+..|.=.+.||+.+.+++...
T Consensus 556 ~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A- 634 (1387)
T KOG1517|consen 556 YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA- 634 (1387)
T ss_pred ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh-
Confidence 3333433 2 56889999999999998753222 246777777777774 6889999999999999988753
Q ss_pred ccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHH----------------hHHHHHH----HH
Q 013663 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV----------------SMDQYLQ----GL 226 (438)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~----------------~~~~ll~----~l 226 (438)
++-+ .-......+...+.|+.++||.+|+-+|+.++....+.|.. ..+.++. .+
T Consensus 635 --rw~G----~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 635 --RWSG----RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred --hhcc----ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 0001 11234456778899999999999999999999863211100 0122222 44
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 227 FLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
..+.+|..+-+|.+....|..++..+...+
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 455678889999999888888887655443
No 146
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.1 Score=52.95 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=117.9
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc---------hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---------~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
.++-.++|.+...+..++.-|-..|..++-.+...-. +.+.+++..++..++..+.-++...-...++++.
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaIm 573 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHH
Confidence 4677789999999999999999999999887765432 2344555667777776655333222334455555
Q ss_pred HHHhhCcccccccHHHHHHH----HhhhhcCC-ChHHHhHHHHHHHHhhcc--CCChhhHHhhHHHHHHHHHhccCcChh
Q 013663 247 LLIEVRPSFLEPHLRNLFEY----MLQVNKDT-DDDVALEACEFWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADD 319 (438)
Q Consensus 247 ~l~~~~~~~~~~~~~~li~~----~~~~~~~~-~~~v~~~a~~~~~~~~~~--~~~~~~~~~~l~~l~~~l~~~l~~~~~ 319 (438)
++....++...|+.+.++.. +....++. ++.--..-+|.++.+... ......+..+...++|++..-++ +
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~---e 650 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS---E 650 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH---H
Confidence 55555555555666655544 44555654 455556666766665443 22334566777788887766554 2
Q ss_pred hhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhc
Q 013663 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399 (438)
Q Consensus 320 d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (438)
|+. ..-.++.+++..+.+..+..+-+...|++.-+++
T Consensus 651 DI~-------------------------------------------EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs 687 (960)
T KOG1992|consen 651 DIQ-------------------------------------------EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS 687 (960)
T ss_pred HHH-------------------------------------------HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC
Confidence 321 1123478888888888766444445555544444
Q ss_pred cCCCCcchhhH---HHHHHHHHHhh
Q 013663 400 ASGDEAWKDRE---AAVLALGAIAE 421 (438)
Q Consensus 400 ~~~~~~w~~r~---aal~~l~~l~~ 421 (438)
-.- |+.+. |.+..+.++..
T Consensus 688 p~l---W~r~gNipalvrLl~aflk 709 (960)
T KOG1992|consen 688 PNL---WKRSGNIPALVRLLQAFLK 709 (960)
T ss_pred HHH---HhhcCCcHHHHHHHHHHHh
Confidence 333 76443 33444444443
No 147
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.71 E-value=1.1 Score=51.09 Aligned_cols=269 Identities=13% Similarity=0.092 Sum_probs=151.1
Q ss_pred HHHHHHHhh-cCCCCHHHHHHHHHHHHHhh----cC---------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013663 16 EICRLLEQQ-ISPSSTADKSQIWQQLQQYS----QF---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (438)
Q Consensus 16 ~l~~~l~~~-~s~d~~~~r~~A~~~L~~~~----~~---------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~ 81 (438)
-+...+... .+++.. ++--|-..|.++. .. .+|..-+..++.+ +.+.++|.+....+++.+..
T Consensus 1137 ~l~~hf~~vg~~~n~~-va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~--s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1137 VLSDFFVTIGCSENLS-IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK--SNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHhcCCcchh-HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHH
Confidence 344444443 455666 7888888776643 11 2355555566765 77889999999999887764
Q ss_pred hhccCCHhhHHHHHHHhhhhh----hcCcHHHHHHHHHHHHHHHHhhc-------cCchHHHHHHHHHHhccC-ChhhHh
Q 013663 82 AYKSMSPSNQQYIKSELLPCL----GAADRHIRSTVGTIVSVVVQLGG-------IAGWLELLQALVTCLDSN-DINHME 149 (438)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l----~~~~~~vr~~~a~~la~i~~~~~-------~~~w~~ll~~l~~~l~~~-~~~~r~ 149 (438)
+-.++ +..-| .++..+ .+..+.+-+.+=..+..|..... .+.+.+++..+.+...+. +.+.-.
T Consensus 1214 ~~~nI----kSGWk-tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL 1288 (1780)
T PLN03076 1214 RVNNV----KSGWK-SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISL 1288 (1780)
T ss_pred HHhhh----hcCcH-HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccH
Confidence 32111 11111 223333 34455555555555666654321 245566666666655433 344444
Q ss_pred HHHHHHHHHHhccccc-c------------------ccCC----CCCC-----cchhhhHHHHHHHhccCCCHHHHHHHH
Q 013663 150 GAMDALSKICEDIPQV-L------------------DSDV----PGLA-----ECPINIFLPRLLQFFQSPHTSLRKLSL 201 (438)
Q Consensus 150 ~al~~l~~l~~~~~~~-~------------------~~~~----~~~~-----~~~~~~il~~l~~~l~~~~~~vr~~al 201 (438)
.|+..|..+...+... + .... ..+. ....-.++..|.....|...+||..|+
T Consensus 1289 ~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~AL 1368 (1780)
T PLN03076 1289 NAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSAL 1368 (1780)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 5555555443333110 0 0000 0000 012233444455566789999999999
Q ss_pred HHHHHHHcccchhhHH-----hHHHHHHHHHHhhC------------------C-C--C---H--HHHHHHHHHHHHHHh
Q 013663 202 GSVNQFIMLMPSALFV-----SMDQYLQGLFLLSN------------------D-P--S---A--EVRKLVCAAFNLLIE 250 (438)
Q Consensus 202 ~~l~~~~~~~~~~~~~-----~~~~ll~~l~~~~~------------------~-~--~---~--~~~~~a~~~l~~l~~ 250 (438)
.+|..++......|.+ .+..++-.++..++ + + + + +.-..+++.++++..
T Consensus 1369 qtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft 1448 (1780)
T PLN03076 1369 QVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV 1448 (1780)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999888665433322 12222222222111 0 0 1 1 223356667777777
Q ss_pred hCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.|.+.+.+.++.++.++..++..+++.+...+..++..+...
T Consensus 1449 ~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1449 KFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 777777778889999999998888999999998888887655
No 148
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.032 Score=51.38 Aligned_cols=143 Identities=21% Similarity=0.216 Sum_probs=96.1
Q ss_pred cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-
Q 013663 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD- 220 (438)
Q Consensus 142 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~- 220 (438)
+.+...++.|+.-|.++++.+..... -.....+..++.++++++..+|..|+..++.+++..|..-...++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAnd--------l~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNAND--------LISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHh--------HhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 34678999999999999998875311 011223455666999999999999999999999998853222222
Q ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcC--CChHHHhHHHHHHHHhhcc
Q 013663 221 QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 221 ~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~ 292 (438)
..++.|+..+. +.+..+|..|+-+++.++.+++.-...++. .=...+..++++ .+...+..++.++..+...
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 23455555443 455688999999999999987654333222 112334455555 4556677888888887654
No 149
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.67 E-value=0.28 Score=50.53 Aligned_cols=248 Identities=14% Similarity=0.132 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
+...+...+..++.. .+ .+-.|...+-++..+|+... .++.+ .....+|-+.++..|++ +.+...
T Consensus 121 ~~~~~d~yiE~lYe~-~~-ek~~~~~~il~La~~~~NL~---~l~~n---------e~l~~aL~RvLred~~k-s~~l~t 185 (708)
T PF05804_consen 121 SINDLDEYIELLYED-IP-EKIRGTSLILQLARNPENLE---ELVQN---------ETLMSALARVLREDWKK-SVELAT 185 (708)
T ss_pred CHHHHHHHHHHHhcc-cH-HHHHHHHHHHHHhCCcchHH---HHHHh---------HHHHHHHHHHHHHHhhh-hHHHHH
Confidence 567777888888864 45 56677788889999998754 33433 34556677777777876 433333
Q ss_pred HHHHHhhhhhhc--C--cHHHHHHHHHHHHHHHHhhc--cCchHHH---------------------HHHHHHHhccCCh
Q 013663 93 YIKSELLPCLGA--A--DRHIRSTVGTIVSVVVQLGG--IAGWLEL---------------------LQALVTCLDSNDI 145 (438)
Q Consensus 93 ~i~~~ll~~l~~--~--~~~vr~~~a~~la~i~~~~~--~~~w~~l---------------------l~~l~~~l~~~~~ 145 (438)
.|-.... +++. . .-..+.+++...-.+..++. .+.|.+= ...+...++.++
T Consensus 186 nI~~iF~-~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQe- 263 (708)
T PF05804_consen 186 NIIYIFF-CFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQE- 263 (708)
T ss_pred HHHHHHH-HHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHH-
Confidence 3322211 1221 1 22234445444444544441 2345321 122222233333
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc--hhhHHhHHHHH
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYL 223 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~ll 223 (438)
.....++.+|..++++...... ..-..+++.|.+.|...+.++...++.++..+.-+-. ..+.. ..++
T Consensus 264 qLlrv~~~lLlNLAed~~ve~k--------M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~--~giV 333 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELK--------MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE--SGIV 333 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHH--------HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--cCCH
Confidence 3444677888888887765421 1235688889999999999999999999887654422 11111 1466
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH--HHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 224 ~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+.+..++..++.++...+++.|..+..... ..+.+ ..++|.+...+++ +..+..|+.++..++.
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSM 399 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhcc
Confidence 777777777778888888888887764211 11111 1344444444443 2344445555555544
No 150
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.18 Score=51.07 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=26.1
Q ss_pred ccCchHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhcccc
Q 013663 125 GIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~ 164 (438)
++..|.-++++|...+++ +.-..+...+.++..+++..+.
T Consensus 385 fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd 425 (865)
T KOG1078|consen 385 FPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD 425 (865)
T ss_pred ccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc
Confidence 356777788888777765 3345566666666666666554
No 151
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.59 E-value=0.26 Score=46.22 Aligned_cols=186 Identities=13% Similarity=0.223 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH---HHhhhhhhc--CcHHHHHHHHHHHHHHHHhhcc---CchHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK---SELLPCLGA--ADRHIRSTVGTIVSVVVQLGGI---AGWLELL 133 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~---~~ll~~l~~--~~~~vr~~~a~~la~i~~~~~~---~~w~~ll 133 (438)
..+-+.|.-++.++.+.+.+.-..=.....+++. ..++..|.. +.+.+.-..+.++-..++++.. --.++.+
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f 166 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECF 166 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHH
Confidence 6677778777777777766532221102234442 224444321 2344444455555555444310 0001233
Q ss_pred HHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch
Q 013663 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (438)
Q Consensus 134 ~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (438)
-.+++.++.++-++-..|+.++..+...-..... .++..+.+.++..+.+++.+++.-+|..+++.|+.++..-..
T Consensus 167 ~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a----~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 167 WKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVA----EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp GGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHH----HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHH----HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 3366777777778888888888887665333211 122345677888888899999999999999999998864321
Q ss_pred --hhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 214 --ALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 214 --~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
....++ +.-+..+..++.|++..++..|+..+--++.+
T Consensus 243 ~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 112222 34567777788999999999999999877754
No 152
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.59 E-value=0.038 Score=50.79 Aligned_cols=143 Identities=13% Similarity=0.189 Sum_probs=100.4
Q ss_pred cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc----ccCCCCCCcchhhhHHHHHHHhcc--------CCC
Q 013663 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL----DSDVPGLAECPINIFLPRLLQFFQ--------SPH 193 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~----~~~~~~~~~~~~~~il~~l~~~l~--------~~~ 193 (438)
...|+-++|.+...+.+.++..|..|+.+|..+++.++... .. .| ..+.+.+.+.+++. +.+
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~--tG----l~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR--TG----LFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH--cC----hHHHHHHHHHHHhhcCCCCCCchhh
Confidence 47899999999999999999999999999999999887632 11 01 23444455555555 456
Q ss_pred HHHHHHHHHHHHHHHcccc----hhhHHhHHHHH-HHHHHhhC----CCCHHHHHHHHHHHHHHHhhCcccccccHHHHH
Q 013663 194 TSLRKLSLGSVNQFIMLMP----SALFVSMDQYL-QGLFLLSN----DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~----~~~~~~~~~ll-~~l~~~~~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li 264 (438)
..+-..|..|+..++.... ......+..++ +.++.-+. .+.+.++...++.+..+++.-+-....|++.++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii 267 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6677889999988876532 11112222222 33433222 124788899999999999887777778999999
Q ss_pred HHHhhhhcCC
Q 013663 265 EYMLQVNKDT 274 (438)
Q Consensus 265 ~~~~~~~~~~ 274 (438)
+.+.+.+.+.
T Consensus 268 ~~l~~~l~np 277 (282)
T PF10521_consen 268 PVLSQILENP 277 (282)
T ss_pred HHHHHHhcCC
Confidence 9998887764
No 153
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.27 Score=51.49 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=131.0
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT-AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~-~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~ 124 (438)
-|+-.+..+++|.+ .-=|.=|+++|.+++.- .|. ++-..--.|...++++|.++-..+|-.++.+-|+|...+
T Consensus 470 PPeQLPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWA-V~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLS-----QVHRLRALVLLARFLDLGPWA-VDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred ChHhcchHHHHHHH-----HHHHHHHHHHHHHHhccchhh-hhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 36677778888774 33456689999998864 464 233334467888999999999999999999999998876
Q ss_pred ccCchHHHHHH-----HHHHhcc---CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHH
Q 013663 125 GIAGWLELLQA-----LVTCLDS---NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTS 195 (438)
Q Consensus 125 ~~~~w~~ll~~-----l~~~l~~---~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~ 195 (438)
+..+ .+|+.. .++.+.+ -++.+|..|..+|..++.....--. . -.-..++..++..++++ .+-
T Consensus 544 ~SCQ-~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~----a---cl~~~li~iCle~lnd~~~pL 615 (1387)
T KOG1517|consen 544 PSCQ-ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQK----A---CLNGNLIGICLEHLNDDPEPL 615 (1387)
T ss_pred chhH-HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHH----H---hccccHHHHHHHHhcCCccHH
Confidence 3211 233332 1111222 2468999999999999987653200 0 11255777889999985 677
Q ss_pred HHHHHHHHHHHHHcccchh-hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 196 LRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 196 vr~~al~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
+|.=.+-||+.+.+..+.. +...=..--..|...+.|+-++||.+|+-+|+.++...
T Consensus 616 LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 616 LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 8888999999987765421 10000012234555677888999999999999999864
No 154
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.54 E-value=0.044 Score=41.86 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccC
Q 013663 218 SMDQYLQGLFLLSNDP----SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (438)
Q Consensus 218 ~~~~ll~~l~~~~~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~ 293 (438)
++=.+++.+-+.+.|. ....|+.+++++..+++...+.+....++++-++...+. .++.+..|++.|..+...-
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhC
Confidence 3334444444444443 346799999999999998777777777888777777765 5679999999999998762
Q ss_pred CChhhHHhhHHHHHHHHHhcc
Q 013663 294 LPHENLKEFLPRLVPVLLSNM 314 (438)
Q Consensus 294 ~~~~~~~~~l~~l~~~l~~~l 314 (438)
..+.+.+.+..++..+++++
T Consensus 86 -~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 86 -KEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred -CHHHHHHHHHHHHHHHHHhc
Confidence 23567888888888877765
No 155
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.84 Score=44.00 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhc-CCChHHHhHHHHHHHHhhcc
Q 013663 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 218 ~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+.+++..+.+-..|++..+|.-|+++++..++..|+....|.+.++..++..+- +.+.+|..+++..+..+.+.
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 4556666666666788889999999999999999999999999999998888764 45789999999998888775
No 156
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.49 E-value=0.4 Score=48.34 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=137.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--cCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh-H
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS--QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN-Q 91 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~--~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~-~ 91 (438)
.++.+.|..+++.+.. +|- +-..+.... ..|.. ..|-+ |..-...+ +.++ ...++. +.+.|..+|.-. .
T Consensus 239 ~el~~~l~k~l~~~~~-~rp-~~~~l~~~~ff~D~~~-~aLrf-LD~l~~kd-n~qK--s~Flk~-Ls~~ip~fp~rv~~ 310 (700)
T KOG2137|consen 239 SELRESLKKLLNGDSA-VRP-TLDLLLSIPFFSDPGL-KALRF-LDDLPQKD-NSQK--SSFLKG-LSKLIPTFPARVLF 310 (700)
T ss_pred HHHHHHHHHHhcCCcc-cCc-chhhhhcccccCCchh-hhhhh-cccccccC-cHHH--HHHHHH-HHHhhccCCHHHHH
Confidence 3567777778888888 887 333333322 23332 21211 11110112 2222 334444 666677777653 4
Q ss_pred HHHHHHhhhhhhcC--cHHHHHHHHHHHHHHHHhhccCc-hHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccc
Q 013663 92 QYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 92 ~~i~~~ll~~l~~~--~~~vr~~~a~~la~i~~~~~~~~-w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
..|...+.+.+.+. .+.+ --.+-.|+....... -+.++|.|...++.. +......-+.=+.-|.+..+.+
T Consensus 311 ~kiLP~L~~el~n~~~vp~~----LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e-- 384 (700)
T KOG2137|consen 311 QKILPTLVAELVNTKMVPIV----LPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE-- 384 (700)
T ss_pred HhhhhHHHHHhccccccccc----cchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--
Confidence 45666666666432 1111 111222232222222 245677777666632 2222222222233334444432
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFN 246 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~a~~~l~ 246 (438)
...+.++|.|...+++.+..++..+++.+..+.+.++-.+.. +.+++.+..+. ...+..++.+++-|+.
T Consensus 385 --------~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c~~ 454 (700)
T KOG2137|consen 385 --------EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPCLA 454 (700)
T ss_pred --------HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHHHHHHHHHH
Confidence 357889999999999999999999999999999888633322 25666665543 4566789999999999
Q ss_pred HHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 247 ~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
.+++...+. ..-..+..++++++..+..+....+.....
T Consensus 455 ~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 455 GLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred HHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999543321 122444555666666677776655544444
No 157
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.41 E-value=0.13 Score=50.11 Aligned_cols=152 Identities=16% Similarity=0.244 Sum_probs=95.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC--------CChHHHhHHHHHHHHhhccCC
Q 013663 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD--------TDDDVALEACEFWHSYFEAQL 294 (438)
Q Consensus 223 l~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~--------~~~~v~~~a~~~~~~~~~~~~ 294 (438)
++-+.+.+...++..|..|+++|..= +-+.+++|.+...+.+ .+-..-...+....++...+.
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TD---------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETD---------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC---------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 34444444446788898888877521 2244555555544321 244444555566666665532
Q ss_pred ChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHH
Q 013663 295 PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (438)
Q Consensus 295 ~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~ 374 (438)
+ .+.+|+..++|.+++++....- +.. .+ . +.+|.+|.-|..+
T Consensus 280 i--~lepYlh~L~PSvlTCvVsk~l------------------------------~~~-p~-~----dnhwaLRDfAA~l 321 (576)
T KOG2549|consen 280 I--FLEPYLHQLVPSVLTCVVSKNL------------------------------CLR-PE-L----DNHWALRDFAARL 321 (576)
T ss_pred c--chhhHHHHHhhHHHHhhhhhhc------------------------------cCC-cc-c----cchHHHHHHHHHH
Confidence 2 3689999999999998763210 000 00 1 2379999999999
Q ss_pred HHHHHhhhchhh---HHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhc
Q 013663 375 LDVLSNVFGDEI---LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 375 l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~ 422 (438)
+..++..++..+ -+.++..+...+.++. ..|-..++++..|..+...
T Consensus 322 l~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 322 LAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHHhhhh
Confidence 999999999843 3445555555565541 2388999999998887753
No 158
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.41 E-value=0.15 Score=48.25 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=89.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC--C-ChHHHhHHHHHHHHhhccCCChhhHH
Q 013663 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD--T-DDDVALEACEFWHSYFEAQLPHENLK 300 (438)
Q Consensus 224 ~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~--~-~~~v~~~a~~~~~~~~~~~~~~~~~~ 300 (438)
..+.+.+.+.+...|..|++.|. . . .-+.+.+|-++.++...... . +-..-...+.+..++...+.. .+.
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~---t-D-~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l--~le 253 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLR---T-D-PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL--HLE 253 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhc---c-C-CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC--chH
Confidence 33333333455666777666543 1 1 12222333333333333221 1 344455566666677665332 368
Q ss_pred hhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHh
Q 013663 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (438)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~ 380 (438)
+|+..++|.+++++.... ... . . + ..++|.+|..|+.++..++.
T Consensus 254 ~Ylh~Lip~vltclv~~~--l~~----------------------------~--~-~---~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQ--LCS----------------------------R--P-P---DDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HhHHHHHHHHHHHhhhHh--hcC----------------------------C--C-C---CchHHHHHHHHHHHHHHHHH
Confidence 999999999999886321 100 0 0 0 12379999999999999999
Q ss_pred hhchh---hHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHh
Q 013663 381 VFGDE---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (438)
Q Consensus 381 ~~~~~---~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~ 420 (438)
.++.. +.|.+...+...+.++. ...-.+++|+..|+.+.
T Consensus 298 ~f~~~y~~l~~ri~~tl~k~l~d~~-~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 298 KFSTSYNTLQPRITRTLLKALLDPK-KPLTTHYGAIVGLSALG 339 (343)
T ss_pred HcCCCCCcHHHHHHHHHHHHHcCCC-CCcchhhHHHHHHHHhC
Confidence 99873 34555555555555442 11456999999998875
No 159
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.41 E-value=0.2 Score=46.23 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=96.6
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHH
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~ 225 (438)
.+-.-|+.+...+.+.++..- +...+.-..+-++..+...+-.||-.-++.+-..+.-++..+.+.++.++..
T Consensus 70 GVH~KaLevY~~IF~~ig~~~-------L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~s 142 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDG-------LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILS 142 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-------HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 355567888888888777531 1234566778888888888899999999999887776667778888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 226 l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
++..+.++..++...+++.+..+....... .+...++.++- .++++|..|+.++..-
T Consensus 143 lLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 143 LLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGALNYLLRR 199 (307)
T ss_pred hccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHHHHHHHHh
Confidence 888788777788888888888887654432 35556666554 4678999999887764
No 160
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.40 E-value=0.025 Score=41.98 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=61.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
.+...+..++|+.+.||..++..|..++..-. .-....+.++..+...++|+|+-+..+|++++..++..+|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 45567788899999999999999999988654 123345788888888999999999999999999999988763
No 161
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.093 Score=55.39 Aligned_cols=181 Identities=14% Similarity=0.083 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhcc
Q 013663 49 FNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGI 126 (438)
Q Consensus 49 ~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~ 126 (438)
|.+.+..+..+- ...+|.+++.|.+.|.+.+- ++.+-.+.-.+.++..|. .+++.||..+..+++.++-..+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-----iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fp- 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-----ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP- 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc-
Confidence 455555555321 24568899999999988753 566666666677888886 6899999999999999987643
Q ss_pred CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
+-....-+.+...+.+.++.+|..|+.++..++-. +.+ .+...++....++.|++.+++..|=..+..
T Consensus 994 nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmi----------KVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 994 NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMI----------KVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhh----------HhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22233345677889999999999999999887632 111 244556677788999999999888766665
Q ss_pred HHcccchhhHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhC
Q 013663 207 FIMLMPSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~a~~~l~~l~~~~ 252 (438)
+..-- ..+...+|.++..| .|+ +.+-...+++.+..+++..
T Consensus 1062 ls~k~-n~iynlLPdil~~L----s~~~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1062 LSSKG-NTIYNLLPDILSRL----SNGNLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred hhhcc-cchhhhchHHHHhh----ccCcccchhhHHHHHHHHHHhccc
Confidence 54322 22333333333333 332 2344556666666666544
No 162
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.38 E-value=0.037 Score=41.06 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=62.2
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccc-cccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
+.+......+.++.+-+|..|+..|+.+++.-. .. ...+.++..++..+.|+++.|-..|++++..++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~----------~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPV----------IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcch----------hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 345566677888888899999999999998777 22 2468899999999999999999999999999998
Q ss_pred ccchh
Q 013663 210 LMPSA 214 (438)
Q Consensus 210 ~~~~~ 214 (438)
..|+.
T Consensus 73 ~~p~~ 77 (92)
T PF10363_consen 73 RHPDE 77 (92)
T ss_pred HChHH
Confidence 88753
No 163
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.37 E-value=0.026 Score=47.35 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh-CcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc-CCChhh
Q 013663 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLPHEN 298 (438)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~-~~~~~~ 298 (438)
.+++.++.-+...+...+--|.+.+.++++. .++.+.|.+++++..+-..+...+.+|...++..+..+... +...+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3455555545545555778888888889888 78889999999999999999999999999999999888443 345678
Q ss_pred HHhhHHHHHHHHH
Q 013663 299 LKEFLPRLVPVLL 311 (438)
Q Consensus 299 ~~~~l~~l~~~l~ 311 (438)
+.||+.+++|.+-
T Consensus 118 LvPyyrqLLp~ln 130 (183)
T PF10274_consen 118 LVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999875
No 164
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.35 E-value=0.32 Score=47.47 Aligned_cols=239 Identities=16% Similarity=0.184 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQ 206 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~ 206 (438)
.-..++..|+..+..++...-+..+.|+.+++-...+.+.+ .....+..+...+.....+| ++.---..+++++.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p----~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP----IAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG----GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 34677777777776543233344555555555444433211 00112333333444444454 56666677888888
Q ss_pred HHcccchh----hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc-ccccccHHHHHHHHhhhhcC-CChHHHh
Q 013663 207 FIMLMPSA----LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKD-TDDDVAL 280 (438)
Q Consensus 207 ~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~~~~~~~~~-~~~~v~~ 280 (438)
++++..+. ....-+.+++.+..+++.+-.+.--.+++.+..+.+.++ .-+.+....+++.++.-.-- ....+ -
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-P 177 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-P 177 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-H
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-C
Confidence 88775422 222334566777777765445667788899999999887 55555666777776654321 11122 2
Q ss_pred HHHHHHHHhhccCCChhhH--HhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCc
Q 013663 281 EACEFWHSYFEAQLPHENL--KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (438)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d 358 (438)
....++..+.+. ....+ ...+..++.+.-+.+.... .|
T Consensus 178 alvrLL~a~i~k--~~~~i~~~~~l~~iLgvFQkLi~sk~--------------------------------------~D 217 (435)
T PF03378_consen 178 ALVRLLQAYIKK--DPSFIVANNQLEPILGVFQKLIASKA--------------------------------------ND 217 (435)
T ss_dssp HHHHHHHHHHHH--HGGG----S-CHHHHHHHHHHHT-TT--------------------------------------CH
T ss_pred cHHHHHHHHHHh--CchhhcchhhHHHHHHHHHHHHCCCC--------------------------------------cc
Confidence 233355555443 11111 3455555554433332100 00
Q ss_pred cccccchhhhhhHHHHHHHHHhhhchh----hHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhh
Q 013663 359 DDIVNVWNLRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~ 421 (438)
..|.++|..+...++.. +++.++..+-+.+++..++....+....+++-++-.
T Consensus 218 ----------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 218 ----------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp ----------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 23788999999999874 455555555555655433223334444434333333
No 165
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.27 E-value=1.7 Score=44.95 Aligned_cols=250 Identities=16% Similarity=0.123 Sum_probs=128.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~ 87 (438)
+...|..+++.++....-.+...|+++.- ..+.+..|..++. +.+...+..|..+|.|. +.+
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~---s~~~~l~~~aLrlL~NL------Sfd 361 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP---SENEDLVNVALRLLFNL------SFD 361 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc---CCCHHHHHHHHHHHHHh------CcC
Confidence 34444444444444377778888887763 2356667777776 45677888888888775 455
Q ss_pred HhhHHHHH-----HHhhhhhhcCcHHHHHHHHHHHHHHHHhh-cc--CchHHHHHHHHHHhccC-ChhhHhHHHHHHHHH
Q 013663 88 PSNQQYIK-----SELLPCLGAADRHIRSTVGTIVSVVVQLG-GI--AGWLELLQALVTCLDSN-DINHMEGAMDALSKI 158 (438)
Q Consensus 88 ~~~~~~i~-----~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~~--~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l 158 (438)
++.+..+. +.+...|.++ ..+..+..++..++..+ .. -...+.+|.+.+.+-+. ++.+...++..+..+
T Consensus 362 ~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 362 PELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINL 439 (708)
T ss_pred HHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence 66655443 2344445443 34455566677776543 11 12345778877766543 333333333333333
Q ss_pred HhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCC-CHH
Q 013663 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAE 236 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~ 236 (438)
+.+-... +++ .-..-++.++... +..+ ...++++.++..+-+ .....+..++..+...+..+ +++
T Consensus 440 a~~~rna------qlm--~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~-~~k~~f~~~i~~L~~~v~~~~~ee 506 (708)
T PF05804_consen 440 ALNKRNA------QLM--CEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDG-PLKELFVDFIGDLAKIVSSGDSEE 506 (708)
T ss_pred hcCHHHH------HHH--HhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhcCCcHH
Confidence 2221110 000 0011223333322 2222 234567777766642 12222333333333434333 344
Q ss_pred HHHHHHHHHHHHHhhCcc--cccccHH--HHHHHHhhhhcC--CChHHHhHHHHHHHHhhccC
Q 013663 237 VRKLVCAAFNLLIEVRPS--FLEPHLR--NLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQ 293 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~--~~~~~~~--~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~~ 293 (438)
. .++|++.++....+ .....+. .++|++...++. .++++...++-++++++..+
T Consensus 507 ~---~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 507 F---VVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred H---HHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 4 45555555443211 2223333 688888777653 46789999999999988753
No 166
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.24 E-value=0.19 Score=46.98 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=105.2
Q ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh------ccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHH
Q 013663 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY------KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (438)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w------~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~ 121 (438)
.+...+..+|..- +.++++.++...++-..+...- ..+........-..+++.+..++..+...++.+++.++
T Consensus 55 ~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555666777652 3789999999999888765321 01111111114456777777789999999999999999
Q ss_pred HhhccCchH---HHHHHHHHHhcc----CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc-----
Q 013663 122 QLGGIAGWL---ELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----- 189 (438)
Q Consensus 122 ~~~~~~~w~---~ll~~l~~~l~~----~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l----- 189 (438)
...+...-. ++++.+++.+++ ++......++.+|+.+.+.-... . .+ .-...++.+...+
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R--~----~f--~~~~~v~~l~~iL~~~~~ 205 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR--Q----VF--WKSNGVSPLFDILRKQAT 205 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH--H----HH--HTHHHHHHHHHHHH----
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH--H----HH--HhcCcHHHHHHHHHhhcc
Confidence 876543333 778888887775 33456688999999987543321 1 00 1144555555555
Q ss_pred cCC--CHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCccc
Q 013663 190 QSP--HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 190 ~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
.+. +.++.-.++-|+.- +.+.++ ....+ ..+++.+..+++ ...+++-+-++.++-.+++..++.
T Consensus 206 ~~~~~~~Ql~Y~~ll~lWl-LSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 206 NSNSSGIQLQYQALLCLWL-LSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -----HHHHHHHHHHHHHH-HTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred cCCCCchhHHHHHHHHHHH-HhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 222 34444455554432 222222 11111 125666666554 345788888888888888776653
No 167
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.3 Score=50.03 Aligned_cols=190 Identities=17% Similarity=0.158 Sum_probs=123.7
Q ss_pred HHHHHHhccCC-CHHHHHHHHHHHHHHHcccchh-hHH-hHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhCccccc
Q 013663 182 LPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA-LFV-SMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 182 l~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~-~~~-~~~~ll~~l~~~~~~~-~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
+..+++.++.. ++..+..|+.=+...+....+. +.- .++.++++|..++++. +.++-..||+++..+.+.+|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45566777665 7777777777777666554332 221 2467888888888764 478999999999999999997654
Q ss_pred ccHH-HHHHHHhhhhc-CCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCC
Q 013663 258 PHLR-NLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (438)
Q Consensus 258 ~~~~-~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~ 335 (438)
-.+. ..+|+++.-+. -+--+|..++++.+-.+++... +.+-+ ...+ ...+.++ +
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l-~a~Lsyl-------D------------- 304 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGAL-SAVLSYL-------D------------- 304 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccH-HHHHHHH-------H-------------
Confidence 3333 35565554332 2456788888877777766410 11100 0011 1112222 0
Q ss_pred CCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhHHhHHHHHHHHhccCCCCcchhhHHH
Q 013663 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAA 412 (438)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~w~~r~aa 412 (438)
+..-...+.|......+|..+.. .++-..+|.+...|+..| -+.-+..
T Consensus 305 --------------------------FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D---~k~ies~ 355 (1051)
T KOG0168|consen 305 --------------------------FFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQD---KKPIESV 355 (1051)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhcc---chhHHHH
Confidence 11223456677777888888755 567778999999999988 7889999
Q ss_pred HHHHHHHhhcch
Q 013663 413 VLALGAIAEGCI 424 (438)
Q Consensus 413 l~~l~~l~~~~~ 424 (438)
+.++.-+++++.
T Consensus 356 ~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 356 CICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHHhcc
Confidence 999999999865
No 168
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.15 Score=55.53 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=115.8
Q ss_pred HHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccC
Q 013663 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (438)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (438)
.+.+.+.+.|.. ....++...-.+|-.+.... ++..-.++|.|...+.+.+...|.-|...++.+...-...+.+
T Consensus 219 ~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~-p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~- 296 (1266)
T KOG1525|consen 219 TIANFLNSCLTEYKSRQSSLKIKYHELILELWRIA-PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE- 296 (1266)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-
Confidence 444444444432 23344555556666555442 3455678999999999999999999999999998877665432
Q ss_pred CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH--HH
Q 013663 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF--NL 247 (438)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l--~~ 247 (438)
.-+.++..++..+.|.+.+||..++++...++...|...... .++..+.. .+.|+++|....-.+ +.
T Consensus 297 -------~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~--~~~~~l~~--~~~D~~~rir~~v~i~~~~ 365 (1266)
T KOG1525|consen 297 -------TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS--TILLALRE--RDLDEDVRVRTQVVIVACD 365 (1266)
T ss_pred -------cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH--HHHHHHHh--hcCChhhhheeeEEEEEee
Confidence 246788899999999999999999999988877665322211 11222222 234455544332222 11
Q ss_pred HHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 248 l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+.+ +-..+.+.++.++...+.|....||.+|+.-+..+-.
T Consensus 366 v~~----~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 366 VMK----FKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhH----hhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 111 1112334477777777888889999999876666544
No 169
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.19 E-value=0.022 Score=47.26 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=69.4
Q ss_pred chhhhHHHHHHHhcc------------------CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHH
Q 013663 176 CPINIFLPRLLQFFQ------------------SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (438)
Q Consensus 176 ~~~~~il~~l~~~l~------------------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 237 (438)
++++.++|.++.-.. |..-++|++|.+|++.++......+. +..++..+..-+.| +.++
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHH
Confidence 456778888776443 23578999999999999987654332 44567777777788 8999
Q ss_pred HHHHHHHHHHHHhhCcccccccHHHHHHHHhhhh
Q 013663 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (438)
Q Consensus 238 ~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~ 271 (438)
+..++..+.+++...|..+.+.+..+++.+-..+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888888887777665554
No 170
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.21 Score=50.05 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHH----HhhhhhhcCcHHHHHHHHHHHHHHHHhh----ccCchHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS----ELLPCLGAADRHIRSTVGTIVSVVVQLG----GIAGWLELL 133 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~----~ll~~l~~~~~~vr~~~a~~la~i~~~~----~~~~w~~ll 133 (438)
..+.++|..|+.++-+...-.-.....+....+.+ .+.++|.++-+.||..+...+.++.... |+..-.+++
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll 264 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLL 264 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 67899999999888776543323333455555533 3555677889999998888777777654 333344444
Q ss_pred HHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 134 QALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 134 ~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
..++.-+. +....+|-..+..|.++...-.. .+.++.++|.+-..+.|.+..||.+++..+..+
T Consensus 265 ~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s----------h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 265 KKITDELAFDTSSDVRCSVFKGLPMILDNPLS----------HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhhhccchheehhHhcCcHHHHcCccc----------hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 44444433 23346777777766665432111 245788999999999999999999999888654
No 171
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.00 E-value=0.54 Score=45.11 Aligned_cols=276 Identities=13% Similarity=0.143 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC----CcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHh------
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF----PDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRT------ 81 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~----p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~------ 81 (438)
...+...++.+++-|.. +|-.+-+.|.-+... ..+...+..+++.+ ....+.+...++.++......
T Consensus 254 ~~~~~~~~~~~~~~ps~--~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 254 SGSDAGSAAGSTYEPSP--MRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred chhhHHhhhcCccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 34566677777777765 788888888766542 22333344444432 577888888888887654421
Q ss_pred --hhcc----------------------------------------------CCHhhHHHHHHHhhhhhhcCcHHHHHHH
Q 013663 82 --AYKS----------------------------------------------MSPSNQQYIKSELLPCLGAADRHIRSTV 113 (438)
Q Consensus 82 --~w~~----------------------------------------------l~~~~~~~i~~~ll~~l~~~~~~vr~~~ 113 (438)
.|+. ++...+......+..+=...+.-+|..+
T Consensus 332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA 411 (728)
T KOG4535|consen 332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAA 411 (728)
T ss_pred CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHH
Confidence 1211 1111111000000000001123344444
Q ss_pred HHHHHHHHHhhccCc----hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 114 GTIVSVVVQLGGIAG----WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 114 a~~la~i~~~~~~~~----w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
....+..+-+-+... -.+....+...+.+..-+.|.-+++.++.|...+-..+ +.....-+......+....+.-
T Consensus 412 ~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~-Ps~~s~~eR~sg~ll~~~~~~A 490 (728)
T KOG4535|consen 412 SRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM-PTPDSFQERFSGLLLLKMLRSA 490 (728)
T ss_pred HhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC-CCchHHHHHHHHHHHHHHHHHH
Confidence 444444433321111 12233444444445455778888888887766554321 0000000112233333333332
Q ss_pred cC---CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHH-Hhh----CCCCHHHHHHHHHHHHHHHhhCcc--ccccc
Q 013663 190 QS---PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF-LLS----NDPSAEVRKLVCAAFNLLIEVRPS--FLEPH 259 (438)
Q Consensus 190 ~~---~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~-~~~----~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~ 259 (438)
+- ...+||..|+++|+++.+++..-....+..+++.-. +.. -....+||=++|.+++.+.++..- .=.++
T Consensus 491 ~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~w 570 (728)
T KOG4535|consen 491 IEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPW 570 (728)
T ss_pred HHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCc
Confidence 22 367899999999999877653111112223332211 111 123457899999999999986422 22356
Q ss_pred HHHHHHHHhhhh-cCCChHHHhHHHHHHHHhhc
Q 013663 260 LRNLFEYMLQVN-KDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 260 ~~~li~~~~~~~-~~~~~~v~~~a~~~~~~~~~ 291 (438)
.+.+++.+.... +..+..||..|...+...+.
T Consensus 571 A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 571 ASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 778888776654 44677888877755554433
No 172
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.95 E-value=2.1 Score=42.94 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc----CCcH---HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----~p~~---~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
|..+|..+.||+.. +|++.-+.|.++.+ .|.. +..|+..... ++.+.-+|.++.++++..+. +++.+
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~-~~~s~~vrnfsliyi~~g~~----Rl~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKE-PSDSSFVRNFSLIYIEMGFD----RLDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhC-CCCchHHHHHHHHHHHHhhh----cCCHH
Confidence 44556667788888 99999999998763 3553 4456666663 35579999999998877655 58999
Q ss_pred hHHHHHHHhhhhhhc
Q 013663 90 NQQYIKSELLPCLGA 104 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~ 104 (438)
.+..+...+++.+..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999974
No 173
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.92 E-value=0.57 Score=47.00 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=91.9
Q ss_pred cCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh---c------cCchHHHHHHHHHHhccCChhhHhHHHHHH
Q 013663 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---G------IAGWLELLQALVTCLDSNDINHMEGAMDAL 155 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~---~------~~~w~~ll~~l~~~l~~~~~~~r~~al~~l 155 (438)
.++|...-.=.+.+..+|.+++...|.....+.|.++.+. + ++....++..+.+.+.+..|..|.-|+..+
T Consensus 291 ~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~ 370 (1128)
T COG5098 291 ELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVL 370 (1128)
T ss_pred hcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 3455443333355667777888999998888888887542 2 345667888889999999999999999999
Q ss_pred HHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
..+++.-..... .-.+++......++|.+.-||..|++.+..++...|
T Consensus 371 ~kifdl~sk~~~---------~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 371 EKIFDLNSKTVG---------RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHhCcccccc---------hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 999886554322 236788888999999999999999999999887665
No 174
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.90 E-value=0.14 Score=51.34 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh-HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC
Q 013663 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN-QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA 127 (438)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~-~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~ 127 (438)
+.+.+..++. ..+..+|..-+..+-+.+ ..+++++ ...|...+...+.+.++.+|.....+++.++...+.+
T Consensus 331 i~p~l~kLF~---~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 331 IIPVLLKLFK---SPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred hhhhHHHHhc---CcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 5556666665 678888865444444433 3466654 4477888888889999999999999999998776544
Q ss_pred ch-HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 128 GW-LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 128 ~w-~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
.. .+++..+...-.+.....|...-.|++.+...+....+ -..+...+...+.|+-..-|.+++..+..
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R----------~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR----------KRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh----------ccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 33 45666665544444556666666777766665544322 12233455567888888889999988888
Q ss_pred HHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
..++.+.. ..-..+++.+.....|++..+|..+...+..+....
T Consensus 474 t~~~~~~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 474 TQEYFDQS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred cccccchh--hhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 77766532 122367777777777888888988888877666543
No 175
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.39 Score=43.44 Aligned_cols=140 Identities=11% Similarity=0.191 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
...+...+..+.+.+|.....++..+..+.+--++.+. ..+..++..+.+.+.+....|-.+|+-++..++.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~--------~~L~~vii~vvkslKNlRS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLN--------PMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 34566677778888898888899999888776665432 3567788888999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHH
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~ 283 (438)
...+.+...+..++..|..-....+--++..+-++|..++..... ..+++-+..+.++.+..+|..+.
T Consensus 159 ~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~ 226 (334)
T KOG2933|consen 159 SLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAA 226 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhh
Confidence 887666665555555444333334456788888899988865432 23334444445566667766554
No 176
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.81 E-value=0.083 Score=52.85 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
..++|.|.+.+.+++..+|..-|.-+...++.+... ...+.++|.+..++.|.++.+|..+++++..++.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~----------~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ----------ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH----------hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 358999999999998888887777666666666653 2357899999999999999999999999998887
Q ss_pred ccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 210 LMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 210 ~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
.+... ++ ..++..+...-.|....+|.+..-|++++..
T Consensus 399 kL~~~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 399 KLSKR---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hhchh---hhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 76532 12 1344444443335555666666666665553
No 177
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.75 E-value=1.4 Score=39.30 Aligned_cols=186 Identities=19% Similarity=0.133 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCC-cHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhh----
Q 013663 27 PSSTADKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP---- 100 (438)
Q Consensus 27 ~d~~~~r~~A~~~L~~~~~~p-~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~---- 100 (438)
+++. .....-..|-++..+. .......+.+..- .+.....+.++..++-.. |+.=+ -....++..+..
T Consensus 13 ~~~~-~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~l----w~~~~-r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 13 SDPE-LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLL----WKAND-RHFPFLQPLLLLLILR 86 (234)
T ss_pred CChH-HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHH----HHhCc-hHHHHHHHHHHHHHhh
Confidence 3444 6677777777776544 4334444443321 144455555666554444 43322 112334433333
Q ss_pred hh---h--cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 101 CL---G--AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 101 ~l---~--~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
.. . +.........+..+..+++..+. .|+++++.+...+ .+.++..+..++..+..+|+.---
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv---------- 155 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV---------- 155 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc----------
Confidence 21 1 23556666777888888887654 9999999999999 777888999999999999942211
Q ss_pred cchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc------hhhHHhHHHHHHHHHHhhCCCC
Q 013663 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLSNDPS 234 (438)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~ll~~l~~~~~~~~ 234 (438)
........+.+-+.. +.|-..++.+.+++...| +.+......++..+.++....+
T Consensus 156 --d~~s~w~vl~~~l~~---~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 156 --DFYSAWKVLQKKLSL---DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred --cHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 123333444444422 233333444555554443 2233344566666666665544
No 178
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.70 E-value=0.87 Score=44.88 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH
Q 013663 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (438)
...-|+.++....-...+.+...+-.++..+..+=+++. .-...+..+..+++...+.. + .| ...+..++..+
T Consensus 24 ~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~d-p--eg--~~~V~~~~~h~ 96 (885)
T COG5218 24 SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDD-P--EG--EELVAGTFYHL 96 (885)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCC-h--hh--hHHHHHHHHHH
Confidence 334455544444333333232223445555554433332 22234455555555221110 0 01 23567788888
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHH
Q 013663 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (438)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~ 265 (438)
+.++..++..||..+++.+..+...+.+.-....+.++..+.+.+-|.++.||..|+.+|+.+-+.... --..+..
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n----een~~~n 172 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN----EENRIVN 172 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC----hHHHHHH
Confidence 899999999999999999988877765432334456677777777788899999999999988753211 0123444
Q ss_pred HHhhhh-cCCChHHHhHHHHH
Q 013663 266 YMLQVN-KDTDDDVALEACEF 285 (438)
Q Consensus 266 ~~~~~~-~~~~~~v~~~a~~~ 285 (438)
.+...+ .|++.+||..|+-.
T Consensus 173 ~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 173 LLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred HHHHHHhcCcHHHHHHHHHHH
Confidence 444444 36788999998743
No 179
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.29 Score=45.97 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=92.0
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hCcccccccH
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHL 260 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~ 260 (438)
+..++..+.+.+.+||..|+..+..++...|..+..++..+++.+..+.-|.+..+|...++.+..++. .++..+.|++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 345667788889999999999999988877766666777788888888888888999999999988664 4566788999
Q ss_pred HHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 261 ~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.-+++++...|.+.-++++..++-++.-+.+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 99999999999888899999998887777664
No 180
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=1.8 Score=39.67 Aligned_cols=217 Identities=11% Similarity=0.062 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh-ccCCH---hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAY-KSMSP---SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALV 137 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w-~~l~~---~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~ 137 (438)
..+..++.+|...+...+...= +..+. -.-+.|...++.+++.++..|.+++...|..|+.. |.-+..++
T Consensus 93 addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf------paaleaiF 166 (524)
T KOG4413|consen 93 ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF------PAALEAIF 166 (524)
T ss_pred CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc------HHHHHHhc
Confidence 5677888888877777665420 01111 01235556777888889999999999999998853 33333332
Q ss_pred HHhcc-----------CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHH
Q 013663 138 TCLDS-----------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVN 205 (438)
Q Consensus 138 ~~l~~-----------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~ 205 (438)
..=-. .+...|...+..+-.+....+...+ . -....++..+..-+.. .+.-|+..+++...
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan-e------ckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN-E------CKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh-H------hhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 22111 1234455555555554443332211 0 1124456666665655 56678888888888
Q ss_pred HHHccc-chhhHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhh------CcccccccHHHHHHHHhhhhcCCCh
Q 013663 206 QFIMLM-PSALFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEV------RPSFLEPHLRNLFEYMLQVNKDTDD 276 (438)
Q Consensus 206 ~~~~~~-~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~a~~~l~~l~~~------~~~~~~~~~~~li~~~~~~~~~~~~ 276 (438)
.+...- ...|.+ -..+++.+++++. |.+|-.+-.++-.++++... .++..-.-++..+.-.+..+..+++
T Consensus 240 eLaeteHgrefla-QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDp 318 (524)
T KOG4413|consen 240 ELAETEHGREFLA-QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDP 318 (524)
T ss_pred HHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCc
Confidence 876542 112211 1356777777664 45565555566666655432 1111111122223333444556788
Q ss_pred HHHhHHHHHHHHhhcc
Q 013663 277 DVALEACEFWHSYFEA 292 (438)
Q Consensus 277 ~v~~~a~~~~~~~~~~ 292 (438)
+....|++.++.+...
T Consensus 319 daieaAiDalGilGSn 334 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHHHhccCC
Confidence 8888888888888665
No 181
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=3.1 Score=42.40 Aligned_cols=283 Identities=15% Similarity=0.095 Sum_probs=158.8
Q ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~--~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
...|.+.++..+.++...+|..+|..++.+ ..++ ++.-.++.....+++++++-.++..|..++..+..+.. +.
T Consensus 458 e~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h- 533 (970)
T COG5656 458 EYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SH- 533 (970)
T ss_pred HHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hh-
Confidence 345677788888899999999999999999 5554 34567888888999988766677777777877765542 11
Q ss_pred CCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--------HHHHHHHHHhhCCC-C-----
Q 013663 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--------DQYLQGLFLLSNDP-S----- 234 (438)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--------~~ll~~l~~~~~~~-~----- 234 (438)
..+..+++..+..++.+-++-+.++-...++.+ +...++.+.|+- ++++......+.++ +
T Consensus 534 ---~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f---Ve~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~v 607 (970)
T COG5656 534 ---EKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF---VEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVV 607 (970)
T ss_pred ---HHHHhhhhHHHHHHHHhcccccchHHHHHHHHH---HHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 112346777777777777765655555544444 444443332222 22333333333222 1
Q ss_pred ---HHHHHHHHHHHHHHH---hhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHH
Q 013663 235 ---AEVRKLVCAAFNLLI---EVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (438)
Q Consensus 235 ---~~~~~~a~~~l~~l~---~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~ 308 (438)
.-.....++++..++ ++.|..++.....+.|.+--++++.-.+.-..|++++....- +.+.+.|....+..
T Consensus 608 DDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf---~skeI~pimwgi~E 684 (970)
T COG5656 608 DDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF---MSKEIEPIMWGIFE 684 (970)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH---HHHHhhhhhhHHHH
Confidence 112233444444444 234444433333445555445666667777888887654321 11334455555554
Q ss_pred HHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch----
Q 013663 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---- 384 (438)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---- 384 (438)
.+...+.... . -.+-..+..+++.+...=+.
T Consensus 685 ll~~~l~~~~----------------------------------------t-----~~y~ee~~~al~nfityG~~ef~~ 719 (970)
T COG5656 685 LLLNLLIDEI----------------------------------------T-----AVYSEEVADALDNFITYGKTEFMD 719 (970)
T ss_pred HHHhcccccc----------------------------------------h-----hhhHHHHHHHHHHHHHhCcccccc
Confidence 4444332110 0 01123456666666543222
Q ss_pred --hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhh-hhccc
Q 013663 385 --EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLS 432 (438)
Q Consensus 385 --~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~-~~~l~ 432 (438)
-+...+.+.++..+.+.+ .....+..++..+-.++=..++.+ .+|+|
T Consensus 720 ~~~y~~i~~eI~~~~l~sE~-n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p 769 (970)
T COG5656 720 AGIYGSICSEISKLCLCSEE-NFLEDFIGVCRIIESLILNIRDELLSQYLP 769 (970)
T ss_pred ccchhHHHHHHHHHHHcchh-hhHHHHHHHHHHHHHHHHHccchhHHhhhH
Confidence 234566677777776654 113567777777777776666543 45555
No 182
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.59 E-value=0.1 Score=40.07 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=66.5
Q ss_pred chhhhHHHHHHHhccC----CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 176 CPINIFLPRLLQFFQS----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
.++=.++..+-..++| .+..-|..++++++.+++..++.+....++++..|...+.. ++++..+++++..++..
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHH
Confidence 3444556666666666 46677899999999999976666666777888877777754 47999999999999976
Q ss_pred C-cccccccHHHHHHHHhh
Q 013663 252 R-PSFLEPHLRNLFEYMLQ 269 (438)
Q Consensus 252 ~-~~~~~~~~~~li~~~~~ 269 (438)
- ++.+.+++++++-.++.
T Consensus 85 L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 85 LDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4 45566666665554443
No 183
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.55 E-value=0.15 Score=45.63 Aligned_cols=144 Identities=16% Similarity=0.276 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC------CChHHHhHHHHHHHHhhccCCChhhHHhhHHH
Q 013663 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD------TDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (438)
Q Consensus 232 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~------~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~ 305 (438)
..+.+.|.+|++++-. .+-+.+++|++++.+.+ .+-.+-...++...++...+ .=.+.||+++
T Consensus 209 Es~~~~r~aAl~sLr~---------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~--~iFvdPY~hq 277 (450)
T COG5095 209 ESDEQTRDAALESLRN---------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK--YIFVDPYLHQ 277 (450)
T ss_pred HHHHHHHHHHHHHhcc---------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC--ceeecHHHHH
Confidence 3456788888887642 13356677766655432 23333334444444444431 1235899999
Q ss_pred HHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchh
Q 013663 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (438)
Q Consensus 306 l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (438)
++|.+++++.-- ++ |+.. + .+.++.+|..|+.+++-.+..||..
T Consensus 278 lmPSilTcliak-----------------------------kl-g~~p---~---dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 278 LMPSILTCLIAK-----------------------------KL-GNVP---D---DHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHH-----------------------------Hh-cCCC---c---chhHHHHHHHHHHHHHHHHhhhhHh
Confidence 999999887520 00 1110 1 1457899999999999999999873
Q ss_pred h--H-HhHHHHHHHHhccC-CCCcchhhHHHHHHHHHHhhcch
Q 013663 386 I--L-PTLMPVIQAKLSAS-GDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 386 ~--~-~~l~~~l~~~l~~~-~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
+ + |.+...+...+-+. .+ .....+|+.+++.+....-
T Consensus 322 YktLkPRvtrTllKafLD~~k~--~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 322 YKTLKPRVTRTLLKAFLDREKT--ESTQYGALKGLSILSKEVI 362 (450)
T ss_pred hhhhchHHHHHHHHHHHhcccc--cchhhhhhhhhhhhchhhe
Confidence 2 2 44444443333222 11 4567899999988876543
No 184
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.19 Score=47.17 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=102.4
Q ss_pred HHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc-
Q 013663 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM- 211 (438)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~- 211 (438)
+..++..+.-.+..+|..|+.-+..+....+..+. .+...+++.+...+.|.+..||....+.+-.++...
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~--------~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ--------SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH--------HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 44455556666889999999999999888776553 357788899999999999999999999988866543
Q ss_pred chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 212 PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
++...+++.-++..+..++.+-.++++.-++..+..++..+|+.+..+...+++.....
T Consensus 132 ~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~ 190 (393)
T KOG2149|consen 132 KEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDV 190 (393)
T ss_pred hhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 44456677778888888888888999999999999999999887776666666555443
No 185
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.49 E-value=0.26 Score=49.28 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=105.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHh--h----c--cCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILA--R----A--EGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~--~----~--~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+..+|-+.-+++.. +-+.|+..|+++.. ++.++..|..+.. . + .-.++.+|.--..+|-+-..
T Consensus 239 ~~~~liAsad~~~~-V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----- 312 (501)
T PF13001_consen 239 FPPLLIASADSNSS-VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----- 312 (501)
T ss_pred HhheeeEEeCCcch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-----
Confidence 33444444556677 99999999998874 5677877777765 1 0 02334444333333322211
Q ss_pred CCHhhHHHHHHHhhhhhhcC--cHHHHHHHHHHH---HHHHHhhccCchH----HHHHHHHHHhc--------cCChhhH
Q 013663 86 MSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIV---SVVVQLGGIAGWL----ELLQALVTCLD--------SNDINHM 148 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l---a~i~~~~~~~~w~----~ll~~l~~~l~--------~~~~~~r 148 (438)
.......+.+.+...+..+ ..++|..+-+.+ ..+..+.++..-. .++..+...++ +.+...|
T Consensus 313 -Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 313 -AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELR 391 (501)
T ss_pred -HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHH
Confidence 1111223334444455443 556666555555 4444443221111 12222222221 2356799
Q ss_pred hHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 149 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
..++.+++.+++..+..+..+ -.++..++..+.++.+++|.+.-+||++++....
T Consensus 392 ~~aYe~lG~L~~~~p~l~~~d---------~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSLFSKD---------LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHHHHHccCccccccc---------HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 999999999999999866432 4567777888888999999999999998887654
No 186
>PF05536 Neurochondrin: Neurochondrin
Probab=95.45 E-value=2 Score=43.35 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=126.3
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHH-----Hhhhhhhc-------CcHHHHHHHH
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-----ELLPCLGA-------ADRHIRSTVG 114 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~-----~ll~~l~~-------~~~~vr~~~a 114 (438)
+..+..+..+|. +.++.-|+.|+.++++.++.. ......+..|.+ .+-++|.. +....+..+.
T Consensus 4 ~~~l~~c~~lL~---~~~D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 4 SASLEKCLSLLK---SADDTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred hHHHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 344556777787 345666666666666655421 111222222221 12222332 2344455556
Q ss_pred HHHHHHHHhhc---cCchHHHHHHHHHHhccCCh-hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc
Q 013663 115 TIVSVVVQLGG---IAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (438)
Q Consensus 115 ~~la~i~~~~~---~~~w~~ll~~l~~~l~~~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (438)
.+++.++.... ....-+-+|.+.+.+.+.+. ....-++.+|..++ ..+..-. .+ .-...++.+.+.+.
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~----aL---l~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAK----AL---LESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHH----HH---HhcCCHHHHHHHHH
Confidence 67777766331 24566778999999987666 78888999999988 3333110 00 01223455555554
Q ss_pred CCCHHHHHHHHHHHHHHHcccchh----hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc------ccccH
Q 013663 191 SPHTSLRKLSLGSVNQFIMLMPSA----LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF------LEPHL 260 (438)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~------~~~~~ 260 (438)
+ .+.....|+..+..++...... ....+..+++.+...........|-.+++.+..+....+.. -..+.
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4 5566777888887776654321 11223345555555444334456778888888888766421 11234
Q ss_pred HHHHHHHhhhhcC-CChHHHhHHHHHHHHhhc
Q 013663 261 RNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (438)
Q Consensus 261 ~~li~~~~~~~~~-~~~~v~~~a~~~~~~~~~ 291 (438)
..+...+...+++ ....-|..++.+...+.+
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555555555543 345556666655555443
No 187
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.45 E-value=0.34 Score=40.28 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHhccC------------------ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 128 GWLELLQALVTCLDSN------------------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~------------------~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
..+.++|.+...+.-. .-..|..|+.++.++.+.+...+ ....++..+..++
T Consensus 6 ~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~----------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 6 HLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI----------DISEFLDRVEAGL 75 (169)
T ss_dssp THHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-----------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHhhc
Confidence 3467888887665421 13699999999999999777643 3678899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh----CCCC--------HHHHHHHHHHHHHHHhhC
Q 013663 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS----NDPS--------AEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~--------~~~~~~a~~~l~~l~~~~ 252 (438)
.| +..+|..+...+..++...|..+...++.+...+-..+ ++.. .+..+.++++...+-...
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99 99999999999999999888766655555544443332 2211 255667777777664443
No 188
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.40 E-value=2.6 Score=40.26 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=128.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHH---------HHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 23 QQISPSSTADKSQIWQQLQQYSQFPDFNNYLAF---------ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 23 ~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~---------il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
.+++++.. +|..|...+..+-.++.+...+.+ -|..+ .....-|.-|.-+.|..+... +-..+.-..
T Consensus 33 ~lL~~~~~-vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~-~~~~~ER~QALkliR~~l~~~--~~~~~~~~~ 108 (371)
T PF14664_consen 33 MLLSDSKE-VRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRD-NKNDVEREQALKLIRAFLEIK--KGPKEIPRG 108 (371)
T ss_pred HHCCCcHH-HHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhccc-CCChHHHHHHHHHHHHHHHhc--CCcccCCHH
Confidence 46777777 999999999988877665554433 23322 455778888999999888762 111122234
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
+...++....+++...|+.+-..++.++-..|. -.+.+-+..+.+.+.++........+.++-++.+.-... +
T Consensus 109 vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR------~ 182 (371)
T PF14664_consen 109 VVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR------K 182 (371)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh------h
Confidence 455566666678889999999999999887642 112233445555554443335555666666665543331 1
Q ss_pred CC--cchhhhHHHHHHHhc---cCCCH--HHHHHHHHHHHHHHcccchhh---HHhHHHHHHHHHHhhCCCCHHHHHHHH
Q 013663 173 LA--ECPINIFLPRLLQFF---QSPHT--SLRKLSLGSVNQFIMLMPSAL---FVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (438)
Q Consensus 173 ~~--~~~~~~il~~l~~~l---~~~~~--~vr~~al~~l~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~~~~a~ 242 (438)
++ +..++.++..+...- ...+. +.-..+.+++..+++..++-+ .+.+ .-+..+...+.-+.+++|..++
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHH
Confidence 11 134555665555441 11222 233344555555555443211 0111 2334445555668889999999
Q ss_pred HHHHHHHhhCc
Q 013663 243 AAFNLLIEVRP 253 (438)
Q Consensus 243 ~~l~~l~~~~~ 253 (438)
+.+.++....+
T Consensus 262 dll~dllrik~ 272 (371)
T PF14664_consen 262 DLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHCCCC
Confidence 99999987543
No 189
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.38 E-value=0.37 Score=51.46 Aligned_cols=169 Identities=21% Similarity=0.243 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhc-------cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH
Q 013663 110 RSTVGTIVSVVVQLGG-------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (438)
Q Consensus 110 r~~~a~~la~i~~~~~-------~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (438)
|+.+-..+-.+++..+ +.-|.-++..+......++ .-...+..+..+.-.....+. . +-..+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~--------~-~~~~l 818 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLH--------P-LGSLL 818 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhh--------h-hhhhh
Confidence 5555555666665532 3334444444444443332 233344455554444444332 2 44677
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-hhCcccccccHH
Q 013663 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI-EVRPSFLEPHLR 261 (438)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~ 261 (438)
|.++.++.+....+|.+|.+|++.+..... .+.+...++.+..++++.+.-+++++..++..++ ......+.||.+
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~---~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSAT---RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 889999999999999999999998876543 2333345555555666655556666555554444 334455668888
Q ss_pred HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 262 ~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
-+++.++..+.+..+.||..|-++...+...
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999998888887554
No 190
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.35 E-value=0.31 Score=46.46 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhc----cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 114 GTIVSVVVQLGG----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 114 a~~la~i~~~~~----~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
++-+..+.+..+ .-.|..+.+.+...+-+.+..+|.+|++++++++.+....- .+...+++.+ +...+
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~-----~~~~l~id~~---ii~SL 75 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQ-----ILLKLHIDIF---IIRSL 75 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHH-----HHHHcCCchh---hHhhh
Confidence 345566666554 35688888888876656669999999999999987665421 0001122222 22333
Q ss_pred c-CC-CHHHHHHHHHHHHHHHccc--chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 190 Q-SP-HTSLRKLSLGSVNQFIMLM--PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 190 ~-~~-~~~vr~~al~~l~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
. +. +..=|..|++.+..++..- ++.+ =..++..+....++++...|..|++++++++-..|+.+
T Consensus 76 ~~~~~~~~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv 143 (371)
T PF14664_consen 76 DRDNKNDVEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV 143 (371)
T ss_pred cccCCChHHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH
Confidence 2 22 3344889999999998873 2222 13577777777888888899999999999998888764
No 191
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.33 Score=48.95 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=32.5
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCC
Q 013663 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD 275 (438)
Q Consensus 226 l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 275 (438)
|-.++.|+..-||+.|+-++.-+.-...+..-|.+..+.+.+.+.+.+++
T Consensus 629 Lepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 629 LEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred HhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhh
Confidence 33345676677899998888777666666666666666666555554433
No 192
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.85 Score=41.36 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=89.0
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
-+..+...+..|.+.++.++..++..+..+..+.++.+.+.+..++-.+.+-++++...|-+.||.++.++.+.+...+.
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677888889999999999999999999988888777777776677777788889999999999999998877766
Q ss_pred ccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 258 ~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
..+..++-.++.-....+.-||..|-..+..+..+
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 65556655555554455667787777777776554
No 193
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=4 Score=41.71 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=103.1
Q ss_pred ccCCHhhHHHHHHHhhhhhh----------c---C-------cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH---Hh
Q 013663 84 KSMSPSNQQYIKSELLPCLG----------A---A-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT---CL 140 (438)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~----------~---~-------~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~---~l 140 (438)
+.++..++..+++.++..+. + + ...+|+++-...-.|+..++.--...+-..+.. ..
T Consensus 370 ~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns 449 (980)
T KOG2021|consen 370 KALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNS 449 (980)
T ss_pred ccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 34667777666665555432 1 0 347899988888888887642111122222222 22
Q ss_pred ccCChhhHhHHHHHHHHHHhccccccccCCCCCCc--chhhhHHHHHHH--hccCCCHHHHHHHHHHHHHHHcccchhhH
Q 013663 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE--CPINIFLPRLLQ--FFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (438)
Q Consensus 141 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~--~~~~~il~~l~~--~l~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (438)
+..++...+.|+..+..+.+..+.....-..+-.. .....+++.++. ....+++.|...-++.+.+...+.... .
T Consensus 450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-s 528 (980)
T KOG2021|consen 450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-S 528 (980)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc-h
Confidence 33467888999999988888776531100000000 112233444432 334567778777777776654443211 2
Q ss_pred HhHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHH
Q 013663 217 VSMDQYLQGLFL--LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY 266 (438)
Q Consensus 217 ~~~~~ll~~l~~--~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ 266 (438)
.+++-++.+... .+.+.+..||..+--.+.++++.-.+.+-|++..++.-
T Consensus 529 q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~ 580 (980)
T KOG2021|consen 529 QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNK 580 (980)
T ss_pred hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445554443 24466788999998899999887667776776665544
No 194
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=95.29 E-value=0.072 Score=39.58 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=52.7
Q ss_pred chhhhhhHHHHHHHHHhhhch---hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhccc
Q 013663 364 VWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLS 432 (438)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~ 432 (438)
+|.+|..|++++..++..++. ..-|.+...+...+.+++ .++..+.+|+..|+.+....- ..+.|+++
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGPEAVRALILPNLK 90 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 799999999999999999986 345667777777776653 348899999999999965433 34567665
No 195
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.23 E-value=2.2 Score=40.75 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc------cCChhhHhHHHHHHHHHHhccccccccCCC---CCC---c
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD------SNDINHMEGAMDALSKICEDIPQVLDSDVP---GLA---E 175 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~------~~~~~~r~~al~~l~~l~~~~~~~~~~~~~---~~~---~ 175 (438)
.-|++++..+-.+++..+...-+-+...+.+.++ +.++..+.+|+..++.++......-. ++. .++ +
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~-Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS-GVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT-B-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC-CcccccccccHHH
Confidence 3456788888888876432222222223333332 34688999999999999876644211 111 111 1
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l 245 (438)
.....++|.+. .-.+..+-+|..|++.+..+-..+|+ +.+..+++.+...+++++.-|+..|..++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 12233445554 22245677899999999999888874 35567888888888888888888777653
No 196
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.15 E-value=0.32 Score=44.65 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=90.5
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh----HH-h-HHHHHHHHHHhhC--------CCCHHHHHHH
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL----FV-S-MDQYLQGLFLLSN--------DPSAEVRKLV 241 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~----~~-~-~~~ll~~l~~~~~--------~~~~~~~~~a 241 (438)
.+..-++|.++..+.|.++.+|..+++++..++...+... .. . ..-+.+++...+- +.+..+-..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 5678899999999999999999999999999998776432 11 1 1122234443332 3446788889
Q ss_pred HHHHHHHHhhCc-----ccccccHHHHHHHHhhhhc----CCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHh
Q 013663 242 CAAFNLLIEVRP-----SFLEPHLRNLFEYMLQVNK----DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (438)
Q Consensus 242 ~~~l~~l~~~~~-----~~~~~~~~~li~~~~~~~~----~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 312 (438)
+.|+..++..-+ .....+...+-+.++..+. .....++...++.+..+... +.-..-.+++.++|.+..
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~--lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE--LGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHH
Confidence 999998876421 1111111222233444332 22577887777777777664 334567899999999988
Q ss_pred ccCc
Q 013663 313 NMIY 316 (438)
Q Consensus 313 ~l~~ 316 (438)
.+..
T Consensus 273 ~l~n 276 (282)
T PF10521_consen 273 ILEN 276 (282)
T ss_pred HhcC
Confidence 7763
No 197
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=7.7 Score=43.98 Aligned_cols=229 Identities=12% Similarity=0.091 Sum_probs=123.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhh---cCCcHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHhhhccC-CHhh
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSM-SPSN 90 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~---~~p~~~~~l~~il~~-~~~~~~~~R~~A~~~Lk~~i~~~w~~l-~~~~ 90 (438)
.+..+.+.+.++++- .|=.|.+.+.++. .++-|+..+.+.+-. -.+..+.++++.-.+....+-|+-..+ +.+.
T Consensus 877 ~~~l~~~sl~~~~p~-~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPK-LRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHHhhhhccCChH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 355566666777877 7777777777655 355666655554321 123444444455555555555544444 3333
Q ss_pred HHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhccCchHHHHHH---HHHHhccCC---hhhHhHHHHHHH------H
Q 013663 91 QQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQA---LVTCLDSND---INHMEGAMDALS------K 157 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~~~w~~ll~~---l~~~l~~~~---~~~r~~al~~l~------~ 157 (438)
...-...++....|+ ++.|+.-+-.+++.|+...++-.|.-.=+. +...+.+.. ..++...=+++. .
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~a 1035 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDA 1035 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHH
Confidence 333234555555665 679999888889888876655556433333 233333221 122222223333 5
Q ss_pred HHhccccccccCCCCCCcchhhhH----HHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCC
Q 013663 158 ICEDIPQVLDSDVPGLAECPINIF----LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP 233 (438)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~i----l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 233 (438)
+...++++++.+.. ......+ +-...-.+.++++-+..+|++|+..+-.+.|.. -++..++..++.++...
T Consensus 1036 littlgpeL~~N~~---~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~--~n~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1036 LITTLGPELGPNGD---KDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH--VNLDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHhcccccCCCCc---ccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh--ccHHHHHHHHHHHhcch
Confidence 66666666654210 0011222 222222334568889999999999988877752 34455666666655433
Q ss_pred CHHHHHHHHHHHHHHHh
Q 013663 234 SAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 234 ~~~~~~~a~~~l~~l~~ 250 (438)
---.|...+.|+-.++.
T Consensus 1111 ~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred hhhhhhhHHhhhhHHhH
Confidence 22344555555555544
No 198
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.12 E-value=0.56 Score=46.71 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=100.0
Q ss_pred ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHH
Q 013663 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQY 222 (438)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~l 222 (438)
+...+.+|+.++..+...+... +. + ..-..++..+++.+.+|+..|...++.++.+++.-.+..=...+ ...
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL-~t---g---~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSAL-RT---G---LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-Hc---C---CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 5678888888888877665542 21 1 23466788889999999999999999999998875532111111 246
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc--ccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE--PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 223 l~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
+..+.+.+.++++.+|..+.+.|-.++-.....++ ++-.-....+...+.|++..|..+|+.++..+.
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 67777888888999999999999888865544332 222233345566678999999999999988864
No 199
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.82 E-value=0.52 Score=39.16 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=78.9
Q ss_pred CchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-----CCCHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-----SPHTSLRKLS 200 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-----~~~~~vr~~a 200 (438)
...|++++.|.+.+++. ++..|..++.++|.+ ..+.+... ..+..... +.........
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-GALDP~~~---------------k~~~~~~~~~~~~~~~~~~~~~~ 69 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGIL-GALDPYKH---------------KSIQKSLDSKSSENSNDESTDIS 69 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cccCcHHH---------------hcccccCCccccccccccchhhH
Confidence 45789999999999864 688999999999765 33332210 00000000 0111111111
Q ss_pred HHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHH
Q 013663 201 LGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDV 278 (438)
Q Consensus 201 l~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v 278 (438)
+ -.....+ ...++.+ -.++.+...++|+. ...+..+++++..+.+.-.....+|+++++|.++..++..++..
T Consensus 70 l----~~~~~~~-~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~ 144 (160)
T PF11865_consen 70 L----PMMGISP-SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSL 144 (160)
T ss_pred H----hhccCCC-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHH
Confidence 1 0001101 1112222 23456666666654 34455677777777655444557999999999999988666666
Q ss_pred HhHHHHHHHHh
Q 013663 279 ALEACEFWHSY 289 (438)
Q Consensus 279 ~~~a~~~~~~~ 289 (438)
+..-+..++.+
T Consensus 145 ~e~~~~qL~~l 155 (160)
T PF11865_consen 145 REFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHH
Confidence 66665555544
No 200
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.82 E-value=0.31 Score=37.25 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=63.8
Q ss_pred chhhhHHHHHHHhccCCC----HHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 176 CPINIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~----~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
.++-.++..|-..++|.+ ..-|+.++++++.+++...+......++++-.|...+. .++++..+++|+..++..
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHh
Confidence 455566777777777753 44589999999999997766666667778777777775 456999999999999976
Q ss_pred Cc-ccccccHHHHHHHH
Q 013663 252 RP-SFLEPHLRNLFEYM 267 (438)
Q Consensus 252 ~~-~~~~~~~~~li~~~ 267 (438)
-. +.+.+.+.+++-.+
T Consensus 85 L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 85 LKEEELGPLLDQIFAAI 101 (107)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 43 44444444444433
No 201
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.52 Score=46.18 Aligned_cols=148 Identities=16% Similarity=0.098 Sum_probs=88.5
Q ss_pred hhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH-hccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh
Q 013663 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC-LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (438)
Q Consensus 102 l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~-l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (438)
+.+.++.+|..-+..+|.-....+. ..++..++.. .++.+.++|++|..+|+.+|-.-+ .
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GTgn---~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----------------~ 585 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGTGN---LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----------------D 585 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcCCc---chhHhhhheeecccCchHHHHHHHHheeeeEecCc----------------c
Confidence 3455666676655555433333221 2344555544 566777888888888877764332 2
Q ss_pred HHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccccc
Q 013663 181 FLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (438)
Q Consensus 181 il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 259 (438)
.++..++.+.+ -++.||....-+|+-.+..-... .-++.|-.++.|+..-||+.|+-++.-+...+.+.+.|.
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 34445555554 46778876666665443332211 122333344567777899999988887777777777787
Q ss_pred HHHHHHHHhhhhcCC
Q 013663 260 LRNLFEYMLQVNKDT 274 (438)
Q Consensus 260 ~~~li~~~~~~~~~~ 274 (438)
+..|.+-+.+++.+.
T Consensus 660 v~~I~k~f~~vI~~K 674 (926)
T COG5116 660 VKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHHHhhh
Confidence 777777766665443
No 202
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.68 Score=42.86 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=89.3
Q ss_pred HhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHH
Q 013663 139 CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFV 217 (438)
Q Consensus 139 ~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (438)
.+.+.+..+|..|++++++++...|..-. .+++ ...++.++..+.. .+..+|..|+-++++++...+.....
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe----~v~E---~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQE----QVIE---LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHH----HHHH---cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 67788899999999999999998886311 0111 1255666666654 56778999999999999887533222
Q ss_pred hHH-HHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHh-hhhcCCChHHHhHHHHHHHHhh
Q 013663 218 SMD-QYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML-QVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 218 ~~~-~ll~~l~~~~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~-~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
.+. .=+..|...+++ .+..+++.++..+..++....+.-.-.-...++... ......+.+++..++....+..
T Consensus 205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 211 013445555554 457888889999988887654332211112222222 2233446677777766555543
No 203
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.65 E-value=4.8 Score=39.41 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch-hhHHhHHHHHHHHH
Q 013663 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLF 227 (438)
Q Consensus 149 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~ll~~l~ 227 (438)
-+..+.|..+++.-+..+.. ..++..++..+.+++.+...+ ..+++.+.+++..+|. .+.++++.++..++
T Consensus 177 PalvrLL~a~i~k~~~~i~~------~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll 248 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVA------NNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLL 248 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCchhhcc------hhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 44555666666666665421 246788999999999876544 3588999999999985 57889999999888
Q ss_pred HhhC-CCCHHHHHHHHHHHHHHHh
Q 013663 228 LLSN-DPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 228 ~~~~-~~~~~~~~~a~~~l~~l~~ 250 (438)
..++ ...++..+..+..++-++-
T Consensus 249 ~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 249 TRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHH
Confidence 8776 4445666666555554443
No 204
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.63 E-value=2.9 Score=43.29 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhccC-------------chHHHHHHHHHHh----ccCChhhHhHHHHHHHHHHhccccccc
Q 013663 105 ADRHIRSTVGTIVSVVVQLGGIA-------------GWLELLQALVTCL----DSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~~~-------------~w~~ll~~l~~~l----~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
..+.++..+..+++.++...... .-..+++.+...+ ...+...+..++.+|+.+ +
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----g---- 518 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----G---- 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----T----
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----C----
Confidence 46788888888888888653111 1123344444443 345667788888888764 1
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCC---CHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~---~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~ 244 (438)
....++.+...+.+. +..+|.+|+.+|..+....|+...+ .+++.+.+. ..+.++|..|+..
T Consensus 519 ----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~---~l~~I~~n~--~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 519 ----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE---ILLPIFMNT--TEDPEVRIAAYLI 583 (618)
T ss_dssp -----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH---HHHHHHH-T--TS-HHHHHHHHHH
T ss_pred ----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH---HHHHHhcCC--CCChhHHHHHHHH
Confidence 245677777777765 7889999999998876665533222 222332221 2357899998765
Q ss_pred HH
Q 013663 245 FN 246 (438)
Q Consensus 245 l~ 246 (438)
+.
T Consensus 584 lm 585 (618)
T PF01347_consen 584 LM 585 (618)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 205
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=94.47 E-value=1.2 Score=44.47 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCH-hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSP-SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQAL 136 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~-~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l 136 (438)
..+...+..|...+++.-... ..++. -....+-..+++.+.+|...|...+-.+|..++...++ ..+ .+.+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV-~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSV-SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHH-HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 667777777777777653221 11111 23345667888899999999999998999998876532 222 4578889
Q ss_pred HHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH-HHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 137 VTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF-LPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 137 ~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i-l~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
...+.+.+.+.|..++++|+.+.-........ .....+ ...+..+.+|+++.|+..++..+.++....
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~-------~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF-------QLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHH-------HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999887655543210 112222 344667789999999999999999987654
No 206
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.38 E-value=5.1 Score=41.09 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=78.8
Q ss_pred CcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCC---HhhHHHHHHHhhhh----hhcCcHHHHHHHHHHHH
Q 013663 47 PDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMS---PSNQQYIKSELLPC----LGAADRHIRSTVGTIVS 118 (438)
Q Consensus 47 p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~---~~~~~~i~~~ll~~----l~~~~~~vr~~~a~~la 118 (438)
++.+..+..++.+. ....+.+|..|.+.+...+.+.-..-+ ......+.+.+.+. ..+.+...+...-.+|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34566666666532 244567888888888888765433221 11222333333333 33334444444455555
Q ss_pred HHHHhhccCchHHHHHHHHHHhc-c--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC--CC
Q 013663 119 VVVQLGGIAGWLELLQALVTCLD-S--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PH 193 (438)
Q Consensus 119 ~i~~~~~~~~w~~ll~~l~~~l~-~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~ 193 (438)
++. -+..++.+...+. + .+..+|..|+.+|..+.+..+.. +-+.+++.+.+ .+
T Consensus 472 N~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------------v~~~l~~i~~n~~e~ 529 (574)
T smart00638 472 NAG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------------VQEVLLPIYLNRAEP 529 (574)
T ss_pred ccC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------------HHHHHHHHHcCCCCC
Confidence 443 2455555555554 2 34678999999998887766643 33445555555 47
Q ss_pred HHHHHHHHHHHHH
Q 013663 194 TSLRKLSLGSVNQ 206 (438)
Q Consensus 194 ~~vr~~al~~l~~ 206 (438)
++||.+|+-.+..
T Consensus 530 ~EvRiaA~~~lm~ 542 (574)
T smart00638 530 PEVRMAAVLVLME 542 (574)
T ss_pred hHHHHHHHHHHHh
Confidence 8899988876644
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.46 Score=46.54 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=85.0
Q ss_pred HHhhhh-hhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 96 SELLPC-LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 96 ~~ll~~-l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
..++.. .++.+..|||++.-+++-++-.+ +++++...+.+. +.++.+|.+...+|+-.|..-+.
T Consensus 554 ~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------- 619 (926)
T COG5116 554 STLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------- 619 (926)
T ss_pred hhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---------
Confidence 344444 66789999999888888766443 456666666654 56899999999999988865553
Q ss_pred CcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCC
Q 013663 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND 232 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 232 (438)
+..+..+-.++.|+..-||..|+-+++.+.....+.+.+++..+...+.+.+.+
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhh
Confidence 334445556677899999999999998887766666666666676666666554
No 208
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.04 E-value=0.74 Score=38.24 Aligned_cols=142 Identities=12% Similarity=0.143 Sum_probs=85.4
Q ss_pred HHHHHHhhhhhhc-CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-----CChhhHhHHHHHHHHHHhccccc
Q 013663 92 QYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 92 ~~i~~~ll~~l~~-~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-----~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
..+...+++.+.. .+..+|+.+..++|.|...+|- -...+.....+ .+.......+ +.......
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~-----~~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~ 78 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPY-----KHKSIQKSLDSKSSENSNDESTDISL-----PMMGISPS 78 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH-----HHhcccccCCccccccccccchhhHH-----hhccCCCc
Confidence 4566778888864 5799999999999999887741 11111111110 0111111111 01111110
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCC-HHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~ 244 (438)
.+ +.+....+..++..++|++ ......++.++..++........++++.+++.+...+...+...+...+.-
T Consensus 79 ~e-------e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~q 151 (160)
T PF11865_consen 79 SE-------EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQ 151 (160)
T ss_pred hH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHH
Confidence 00 1234556677888888875 334557788888877666555578888999999888876566777777777
Q ss_pred HHHHHh
Q 013663 245 FNLLIE 250 (438)
Q Consensus 245 l~~l~~ 250 (438)
|+.++.
T Consensus 152 L~~lv~ 157 (160)
T PF11865_consen 152 LADLVS 157 (160)
T ss_pred HHHHHH
Confidence 777664
No 209
>PF05536 Neurochondrin: Neurochondrin
Probab=94.00 E-value=3 Score=42.11 Aligned_cols=243 Identities=13% Similarity=0.028 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC----CCHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS----PHTSLRKLSLGSVN 205 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vr~~al~~l~ 205 (438)
+.-+......+++.+...|..|+..+..+++.-+..-. .-+.+++..-..++..++..-.. +....+..|+..+.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~-~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQ-TRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHH-HHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 34566777788888888999999999999885442100 00001111113344444433222 23556788888888
Q ss_pred HHHcccchhh--HHhHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhH
Q 013663 206 QFIMLMPSAL--FVSMDQYLQGLFLLSNDPSA-EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALE 281 (438)
Q Consensus 206 ~~~~~~~~~~--~~~~~~ll~~l~~~~~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~ 281 (438)
.+.. ++.+ .+.+-.-++.+.+.+...+. .....+++||..++. +++=-...+. .-++.+...+.+ .......
T Consensus 83 ~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 83 AFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 8876 2222 23344455666666554444 788899999999983 3332111111 344444444443 4455677
Q ss_pred HHHHHHHhhccCC--ChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCcc
Q 013663 282 ACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (438)
Q Consensus 282 a~~~~~~~~~~~~--~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~ 359 (438)
|+..|..+..... .+..-...+..+++.+-+.+... .
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~---------------------------------------~-- 197 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF---------------------------------------H-- 197 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh---------------------------------------c--
Confidence 7777777655411 12222333444444432222110 0
Q ss_pred ccccchhhhhhHHHHHHHHHhhhc---------hhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchh
Q 013663 360 DIVNVWNLRKCSAAALDVLSNVFG---------DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (438)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~---------~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~ 425 (438)
.+.|..+...|..+-...+ ....+.+...+...+++.-+ ...|.+++.+.+++.+.++.
T Consensus 198 -----~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~--~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 198 -----GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT--PSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred -----cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhCh
Confidence 0112223334444333331 13456677777777777532 77899999999999987653
No 210
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.96 E-value=12 Score=41.41 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcc--CCHhhHHHHHHHhhhhhh---cC-c-HHHHH-HHHHHHHHHH----Hhh--ccC
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKS--MSPSNQQYIKSELLPCLG---AA-D-RHIRS-TVGTIVSVVV----QLG--GIA 127 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~--l~~~~~~~i~~~ll~~l~---~~-~-~~vr~-~~a~~la~i~----~~~--~~~ 127 (438)
+.+.++|.+.+..+-..++-+=.. .+.++...|-..++..+. +. + .+.|+ .+-.-++.+- ..+ ..+
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE 140 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence 789999999988887766533222 344566666677766653 32 2 23332 1122222221 111 123
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc----cCCCHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----QSPHTSLRKLSLGS 203 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l----~~~~~~vr~~al~~ 203 (438)
..++++..++..++.+.+.-...-+.++..+..+... .-..++..++.-+ .+....-+..|-.+
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~------------v~~e~L~~ll~~lv~~~~~~~~~a~~la~~l 208 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT------------VQSELLDVLLENLVKPGRDTIKEADKLASDL 208 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 3455555555555444333222233334444333332 1233333333333 23333334444444
Q ss_pred HHHHHcccch----------------------hhHHh-------HHHHH----HHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 204 VNQFIMLMPS----------------------ALFVS-------MDQYL----QGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 204 l~~~~~~~~~----------------------~~~~~-------~~~ll----~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
+..+...+.. .+... .+.++ +-|..-+...+..+|..|...++.+..
T Consensus 209 i~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~ 288 (1266)
T KOG1525|consen 209 IERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFS 288 (1266)
T ss_pred HHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 4443332210 01111 12222 222222345668899999999999988
Q ss_pred hCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
.....+....+.+....+..+.|.+.+||..+++....+.
T Consensus 289 ~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 289 DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 7666665556677777777778889999999998776653
No 211
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.90 E-value=3.3 Score=38.79 Aligned_cols=157 Identities=8% Similarity=0.093 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhhc--cCchHHHHHHHHH----HhccCChhhH-hHHHHHHHHHHhccccccccCCCCCCcchhhhH
Q 013663 109 IRSTVGTIVSVVVQLGG--IAGWLELLQALVT----CLDSNDINHM-EGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (438)
Q Consensus 109 vr~~~a~~la~i~~~~~--~~~w~~ll~~l~~----~l~~~~~~~r-~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (438)
+|+.+-..+...+.... ..-+..++|.+++ -.++..|..| ...+.++..+++.+...+.+ .++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~--------~v~~I 114 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP--------QVPQI 114 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC--------CHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh--------hHHHH
Confidence 34444555555554321 1123344444333 3344445555 35677888888888775432 34444
Q ss_pred HH----HHHHhccC---CCHHHHHHHHHHHHHHHcccchhhH----HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 182 LP----RLLQFFQS---PHTSLRKLSLGSVNQFIMLMPSALF----VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 182 l~----~l~~~l~~---~~~~vr~~al~~l~~~~~~~~~~~~----~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
+. ..+..+++ .-|+.|..=.+.+..++......+. ..+..+++.+...+++++.++...+++++..+++
T Consensus 115 ~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 115 LEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 44 44444444 3588998888888888776554432 2356778888888899999999999999999987
Q ss_pred hCcc--------cccccHHHHHHHHhhhhcC
Q 013663 251 VRPS--------FLEPHLRNLFEYMLQVNKD 273 (438)
Q Consensus 251 ~~~~--------~~~~~~~~li~~~~~~~~~ 273 (438)
.... ++..|.-.++..++.++.|
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6443 2333334455555555444
No 212
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.88 E-value=6.8 Score=38.14 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=97.4
Q ss_pred cCCHhhHHHHHHHhhhhhh---cCcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHh
Q 013663 85 SMSPSNQQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~---~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~ 160 (438)
+-++.+++.++..+....+ +-.+.+|+.+...+....-.. ....-.+++..+-..++.-....+..-...+..++-
T Consensus 144 S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vll 223 (409)
T PF01603_consen 144 SPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLL 223 (409)
T ss_dssp SSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 3456666677666665554 336677777777776665432 334445555555555543221122222222222211
Q ss_pred ccccccccCCCCCCcchhhhHHHHHHHhcc------------------CCCHHHHHHHHHHHHHHHcccc-hhhHHhHHH
Q 013663 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQ------------------SPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQ 221 (438)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~------------------~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~ 221 (438)
-+- .. ..+..+...+...+.+.+. -.+..=...-+.-+..++..++ ..+.+....
T Consensus 224 PLh---~~---~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 224 PLH---KS---PHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp GGG---GS---TGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHh---cC---CcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111 00 0001122222222222221 2233333445555666666554 345555566
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh----hc-CCChHHHhHHHHHHHHhhcc
Q 013663 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV----NK-DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~----~~-~~~~~v~~~a~~~~~~~~~~ 292 (438)
++..+...++++..+|...|+..+..--- -..+..+...++|.++.. .+ +=+..||..|...+..+.+.
T Consensus 298 lf~~la~ci~S~h~qVAErAl~~w~n~~~--~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERALYFWNNEYF--LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHGGGGSHHH--HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHCCHHH--HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777888888888888776532100 012233334455555444 33 22778999999888887764
No 213
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=7.6 Score=38.38 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=133.3
Q ss_pred HHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 132 LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 132 ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
+++...+.... .+.+.+++..+++..+++.....+..+ ++ ..-.++..++-....++.+|-..++..-.++-+.
T Consensus 247 ~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~n-p~----~~l~~vellLl~~~h~~~evie~SF~fW~~lse~ 321 (559)
T KOG2081|consen 247 ILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTN-PE----EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEE 321 (559)
T ss_pred ccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhC-CC----cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHH
Confidence 34444444332 345566666666666666554433211 00 1122333344444556666655555443333222
Q ss_pred c--c------hhhHHhHHHHHHHHHHhhCCC-------C-----HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 211 M--P------SALFVSMDQYLQGLFLLSNDP-------S-----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 211 ~--~------~~~~~~~~~ll~~l~~~~~~~-------~-----~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
. + ..|.+++..+++.+..-.+-+ + .+.|..+.+.+.+++...+. .+.+..+...
T Consensus 322 l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs------~e~lk~~~~~ 395 (559)
T KOG2081|consen 322 LTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGS------DECLKQMYIR 395 (559)
T ss_pred HhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHHH
Confidence 1 1 124566666777666543211 1 24566666666666543332 1233333333
Q ss_pred hc--CCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCC
Q 013663 271 NK--DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (438)
Q Consensus 271 ~~--~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~ 348 (438)
++ ....+....++-++..++.. +.+.=..++|.+++.+..-++
T Consensus 396 l~e~~~~We~~EAaLF~l~~~~~~------~~~~e~~i~pevl~~i~nlp~----------------------------- 440 (559)
T KOG2081|consen 396 LKENNASWEEVEAALFILRAVAKN------VSPEENTIMPEVLKLICNLPE----------------------------- 440 (559)
T ss_pred HccCCCchHHHHHHHHHHHHHhcc------CCccccchHHHHHHHHhCCcc-----------------------------
Confidence 33 34677777887777776654 333333445555544442111
Q ss_pred CCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhh
Q 013663 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (438)
Q Consensus 349 ~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~ 426 (438)
-..+|+.+...++.+.+++.. ..+..+..++...++... .--++-.++-.++.+|...
T Consensus 441 ---------------Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~-----~as~~a~~~~~i~~~c~~~ 500 (559)
T KOG2081|consen 441 ---------------QAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR-----LASAAALAFHRICSACRVQ 500 (559)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc-----hhHHHHHHHHHHHHHHHHH
Confidence 023789999999999999966 777888888877775543 3345666777899999999
Q ss_pred hhhccccccc
Q 013663 427 LYPHLSEVIF 436 (438)
Q Consensus 427 ~~~~l~~i~~ 436 (438)
+..++|++.+
T Consensus 501 ~~~l~~~~~~ 510 (559)
T KOG2081|consen 501 MTCLIPSLLE 510 (559)
T ss_pred hhhhhHHHHH
Confidence 9998888764
No 214
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.46 E-value=1.7 Score=37.12 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=82.4
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
+...++.+++...+++..+|..|++.+..++..- -..| ...++.+..+..|+++.+|..|.+.+..+.+.+++.+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567778888899999999999999998887642 0011 13567777788899999999999999999999998876
Q ss_pred ccHHHHHHHHhhhhc----CCChHH---HhHHHHHHHHhhccCCChhhHHhhHHHHHHH
Q 013663 258 PHLRNLFEYMLQVNK----DTDDDV---ALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (438)
Q Consensus 258 ~~~~~li~~~~~~~~----~~~~~v---~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~ 309 (438)
.-+.+-+.......+ +..... ....+..|.++... .++.-+.++..++..
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~--~r~~R~~Fl~~l~k~ 138 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS--NRKSRRKFLKSLLKQ 138 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc--ccHhHHHHHHHHHHH
Confidence 655555554443321 211111 34445556666553 122234455544433
No 215
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.41 E-value=0.59 Score=44.21 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=73.8
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHHHhhC
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN---DPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~~~~~a~~~l~~l~~~~ 252 (438)
......+..+...+.+.+...|..|+..|..= ..+.+.+|-++.-+.+... +.+.......++.+..++.+.
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 34455566676777778888888888877531 1122233333333322211 114555667777888888777
Q ss_pred cccccccHHHHHHHHhhhhc----------CCChHHHhHHHHHHHHhhcc
Q 013663 253 PSFLEPHLRNLFEYMLQVNK----------DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 253 ~~~~~~~~~~li~~~~~~~~----------~~~~~v~~~a~~~~~~~~~~ 292 (438)
.-.+.+|+.+++|.++.|+- +.+..+|..|..++..+++.
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 77888999999999887741 24568899999999999876
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.26 E-value=6.9 Score=39.76 Aligned_cols=108 Identities=9% Similarity=0.074 Sum_probs=85.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccc------hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
+..+.+++++.+..+|-..+++.++++.... +.+.+.++.++..+...+.|..|-+|..|++.+..+.....+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 3456778888999999999999999887542 2334456678888888889999999999999998888764433
Q ss_pred ccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 256 ~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
. .--..++..+...++|...-||..|+.+.+.+.
T Consensus 381 ~-~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 381 V-GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred c-chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2 334578899999999999999999999888764
No 217
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.25 E-value=4.8 Score=39.64 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC------Hhh
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS------PSN 90 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~------~~~ 90 (438)
+.++.+.+.+.|.. .|+.|-+.|+.-..--.+.+++...++. +...++-+-...+|-+.+.-.|+-+. +..
T Consensus 209 y~~It~a~~g~~~~-~r~eAL~sL~TDsGL~~LlPyFv~fIae--~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepY 285 (576)
T KOG2549|consen 209 YKEITEACTGSDEP-LRQEALQSLETDSGLQQLLPYFVTFIAE--GVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPY 285 (576)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHhhccCccHHHHHHHHHHHHhh--heeeccccccHHHHHHHHHHHHHHhcCCccchhhH
Confidence 55666666777877 8888866655433222245566666654 44444333344455555555554331 123
Q ss_pred HHHHHHHhhhhhh----------cCcHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHhccC--ChhhHhHHHHHH
Q 013663 91 QQYIKSELLPCLG----------AADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSN--DINHMEGAMDAL 155 (438)
Q Consensus 91 ~~~i~~~ll~~l~----------~~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l 155 (438)
...+...++.++. +..+.+|.-+|..++.|++..+ .+.-+.++.++...+.+. ......|++..|
T Consensus 286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence 3444455555542 2367899999999999998753 334567777777777764 467888888888
Q ss_pred HHHHhcc
Q 013663 156 SKICEDI 162 (438)
Q Consensus 156 ~~l~~~~ 162 (438)
..+-...
T Consensus 366 ~~lg~~~ 372 (576)
T KOG2549|consen 366 SELGHEV 372 (576)
T ss_pred HHhhhhh
Confidence 7775543
No 218
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.25 E-value=5.8 Score=41.07 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhc-------------cCCHhhHHHHHHHhhhhhhcCcHHHHHHHH
Q 013663 49 FNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYK-------------SMSPSNQQYIKSELLPCLGAADRHIRSTVG 114 (438)
Q Consensus 49 ~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~-------------~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a 114 (438)
.+..+..++... ....+.+|..|.+.+...+.+... .+.......+...+-.+....+..-+..+-
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 444454554421 145678888888888888765322 223334444444444444455667777777
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHhccC---ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC
Q 013663 115 TIVSVVVQLGGIAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (438)
Q Consensus 115 ~~la~i~~~~~~~~w~~ll~~l~~~l~~~---~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (438)
.+|+++.. +..++.+...+.+. +..+|..|+.+|..+....+ ..+.+.++..+.+
T Consensus 512 kaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---------------~~v~~~l~~I~~n 569 (618)
T PF01347_consen 512 KALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---------------EKVREILLPIFMN 569 (618)
T ss_dssp HHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---------------HHHHHHHHHHHH-
T ss_pred HHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---------------HHHHHHHHHHhcC
Confidence 88887743 45666666666554 56899999999976654444 3455666666665
Q ss_pred --CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 013663 192 --PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCA 243 (438)
Q Consensus 192 --~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~a~~ 243 (438)
.+.+||.+|+..+.. ..|.. .+++.+...+ .+++.+|+.-+..
T Consensus 570 ~~e~~EvRiaA~~~lm~---~~P~~------~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 570 TTEDPEVRIAAYLILMR---CNPSP------SVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp TTS-HHHHHHHHHHHHH---T---H------HHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHh---cCCCH------HHHHHHHHHHhhCchHHHHHHHHH
Confidence 368899999876644 22321 2334344444 3556666655443
No 219
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.25 E-value=5.8 Score=35.36 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC--CCHHHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQF 207 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~ 207 (438)
.+-+..+.+.+...+...|+.+..+|+++- .+.-+|.+.+.|.+ .++-||-.|.++|+.+
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~------------------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQ------------------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhcc------------------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 456777777777777788888888876541 24566777777776 4788999999999987
Q ss_pred HcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
..- .-+++|.+.++|+++-++..+.-+|.-+
T Consensus 248 a~e----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 248 ADE----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred cCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 652 3455666777887777777665555433
No 220
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.20 E-value=0.55 Score=36.42 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=49.8
Q ss_pred HHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchh--hhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 131 ELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI--NIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 131 ~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
+++..|++.+. +.++.....|+.=++.+++..|..- ..+ -..=..+++++++++++||..|+.|+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr---------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR---------NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH---------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH---------HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 67777777773 4467777778888999999887631 111 22345789999999999999999999887
Q ss_pred Hc
Q 013663 208 IM 209 (438)
Q Consensus 208 ~~ 209 (438)
+.
T Consensus 114 m~ 115 (119)
T PF11698_consen 114 MV 115 (119)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 221
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.16 E-value=4.3 Score=37.89 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=82.5
Q ss_pred HHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC----CCHHHHHHHHHHHHHHHccc
Q 013663 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS----PHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vr~~al~~l~~~~~~~ 211 (438)
++..+..+|.-....|+.++..++..-+.... .....+++.+++.+.+ ++.+++..|+.++..++..-
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~--------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE--------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H--------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc--------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 33456667888999999999999877665321 1124667777777665 35567788999999887542
Q ss_pred c--hhhHHhHHHHHHHHHHhh-----C--CCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcC-CChHHHh
Q 013663 212 P--SALFVSMDQYLQGLFLLS-----N--DPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKD-TDDDVAL 280 (438)
Q Consensus 212 ~--~~~~~~~~~ll~~l~~~~-----~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~-~~~~v~~ 280 (438)
. ..|.. ...++.+...+ . ....++..+++-|+.-+.- .++...... ..+++.+...++. .-+.|..
T Consensus 182 ~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR 258 (312)
T PF03224_consen 182 EYRQVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVR 258 (312)
T ss_dssp HHHHHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred hhHHHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence 2 11111 23444444444 1 1235667777777764432 111111100 1277877777653 4678888
Q ss_pred HHHHHHHHhhcc
Q 013663 281 EACEFWHSYFEA 292 (438)
Q Consensus 281 ~a~~~~~~~~~~ 292 (438)
-++..+..+.+.
T Consensus 259 v~la~l~Nl~~~ 270 (312)
T PF03224_consen 259 VSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHHhc
Confidence 888888888776
No 222
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=5.7 Score=44.93 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=124.0
Q ss_pred CCHhhHHHHHH-------Hhhhhhhc-CcHHHHHHHHHHHHHHHHhhccCch--HHHHHHHHHHhccC---ChhhHhHHH
Q 013663 86 MSPSNQQYIKS-------ELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGW--LELLQALVTCLDSN---DINHMEGAM 152 (438)
Q Consensus 86 l~~~~~~~i~~-------~ll~~l~~-~~~~vr~~~a~~la~i~~~~~~~~w--~~ll~~l~~~l~~~---~~~~r~~al 152 (438)
++.+.++.++. .+++.+.+ ..+.+|+.++.+++++... +. .+ -.++......+.++ ++..+.+++
T Consensus 37 l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd-~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~ 114 (2067)
T KOG1822|consen 37 LNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIARLISN-GD-SFSLYSRLNSCNDFLSDGSPSDPQRKLAAL 114 (2067)
T ss_pred CCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cc-hhhHHHHHHHhhhhhhcCCCccHHHHHhhc
Confidence 45555554443 23344444 4788999999999999875 21 11 12222333333333 346778899
Q ss_pred HHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc--hhhHHhHHHHHHHHHHhh
Q 013663 153 DALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLS 230 (438)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~ll~~l~~~~ 230 (438)
.+++.+.+.++.... .-....+..+.+........+|....-++.+....+. .........+.......+
T Consensus 115 ~~l~~~y~~~g~~~~--------~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~l 186 (2067)
T KOG1822|consen 115 SCLGSLYEHYGRMIG--------RGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSL 186 (2067)
T ss_pred cchHHHHHHhhHhhc--------chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhh
Confidence 999999998887643 2356777888888888888888887777777666554 222222233444343444
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccc-cccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 231 NDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 231 ~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
.+..-.+|..+.+|+..+....+..+ ..-++.+..++++.....+.++|-.-.+++.++..
T Consensus 187 ld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla 248 (2067)
T KOG1822|consen 187 LDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLA 248 (2067)
T ss_pred hhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHh
Confidence 45556799999999999988776665 44455666666666666667777666666666543
No 223
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.03 E-value=3.1 Score=38.93 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=82.3
Q ss_pred HHHHHHHhccCCCHHHHH-HHHHHHHHHHcccchhhHHhHHHHHHHHHH----hhCC---CCHHHHHHHHHHHHHHHhhC
Q 013663 181 FLPRLLQFFQSPHTSLRK-LSLGSVNQFIMLMPSALFVSMDQYLQGLFL----LSND---PSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 181 il~~l~~~l~~~~~~vr~-~al~~l~~~~~~~~~~~~~~~~~ll~~l~~----~~~~---~~~~~~~~a~~~l~~l~~~~ 252 (438)
++..++.-.++..+..|. .++.++..++..+.+.+.+.++.++..++. ++.+ .-|+.|..-++.+..+...+
T Consensus 72 l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 72 LLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp HHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 333333333445555553 456677777766554444445555554444 4432 23899999999999999887
Q ss_pred ccccccc----HHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccC-C-Ch----hhHHhhHHHHHHHHHhccCc
Q 013663 253 PSFLEPH----LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-L-PH----ENLKEFLPRLVPVLLSNMIY 316 (438)
Q Consensus 253 ~~~~~~~----~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~-~-~~----~~~~~~l~~l~~~l~~~l~~ 316 (438)
+..+... +..++..+.-++++.+.+|...+++.+..+.+.- . .. ...+.|+-.++..++..+.+
T Consensus 152 f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 152 FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7655433 3456666777789999999999998888876541 0 11 23345555555555555543
No 224
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=13 Score=38.40 Aligned_cols=235 Identities=16% Similarity=0.147 Sum_probs=139.8
Q ss_pred HhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH------HHhhhhhhcCcHHHHHHHHH
Q 013663 42 QYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK------SELLPCLGAADRHIRSTVGT 115 (438)
Q Consensus 42 ~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~------~~ll~~l~~~~~~vr~~~a~ 115 (438)
.|.++++++..++..+. ..+-.+|.+|..+|...+.+. +.+.+..+. +.++..|.+....||+.+-.
T Consensus 116 ~fik~qd~I~lll~~~e---~~DF~VR~~aIqLlsalls~r----~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 116 QFIKNQDNITLLLQSLE---EFDFHVRLYAIQLLSALLSCR----PTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred HHHcCchhHHHHHHHHH---hhchhhhhHHHHHHHHHHhcC----CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 45678999998888886 689999999999999988764 555554443 46777788889999999999
Q ss_pred HHHHHHHhhcc----CchHHHHHHHHHHhccC----ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHH
Q 013663 116 IVSVVVQLGGI----AGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ 187 (438)
Q Consensus 116 ~la~i~~~~~~----~~w~~ll~~l~~~l~~~----~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 187 (438)
.+..+++..+. -.+.++|..|+..+... ..-+..-++..+..+.+.-... .++| .-...+|.+.+
T Consensus 189 lL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN-----Q~~F--rE~~~i~rL~k 261 (970)
T KOG0946|consen 189 LLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN-----QNFF--REGSYIPRLLK 261 (970)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch-----hhHH--hccccHHHHHh
Confidence 99999876532 24667777777777642 2356777888888887765431 0122 01334555554
Q ss_pred hccC---CCHH------HHH----HHHHHHHHHHccc-c-hhhH---HhHH--HHHHHHHHhhCCCC--HHHHHHHHHHH
Q 013663 188 FFQS---PHTS------LRK----LSLGSVNQFIMLM-P-SALF---VSMD--QYLQGLFLLSNDPS--AEVRKLVCAAF 245 (438)
Q Consensus 188 ~l~~---~~~~------vr~----~al~~l~~~~~~~-~-~~~~---~~~~--~ll~~l~~~~~~~~--~~~~~~a~~~l 245 (438)
.+.- .+.+ -|. .++.++..++.-- + ..-. ..+. .++..|+.++-++. .+++..+.-++
T Consensus 262 lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitv 341 (970)
T KOG0946|consen 262 LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITV 341 (970)
T ss_pred hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHH
Confidence 4432 1111 133 3344443333211 1 1111 1222 46778887765553 47777777777
Q ss_pred HHHHhhCc-------ccccccHH-----HHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 246 NLLIEVRP-------SFLEPHLR-----NLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 246 ~~l~~~~~-------~~~~~~~~-----~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
..++..+. +...|+.+ -++-++...........|-.++-++.++.
T Consensus 342 AevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 342 AEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 77776432 12223333 22233333334445666766666555543
No 225
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=15 Score=38.02 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=102.9
Q ss_pred CCHhhHHHHHHHhhhhhhcC-------cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 86 MSPSNQQYIKSELLPCLGAA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~-------~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
.+++...++...++..+... ++......+.-++.+.... ++.+..+.+.+...|-.+|..++..+..+
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSAL 149 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHH
Confidence 34555555555555444321 2223344455555554332 57788888888888899999999999999
Q ss_pred HhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-HHhHHHHHHHHHHhhCC-C--C
Q 013663 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSND-P--S 234 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~ll~~l~~~~~~-~--~ 234 (438)
...-|.+++.- + ...+.-+..++..+.|....+|..|+-.|..++...+..- ...++.++..|++++.. + +
T Consensus 150 ls~r~~e~q~~---l--l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~d 224 (970)
T KOG0946|consen 150 LSCRPTELQDA---L--LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLD 224 (970)
T ss_pred HhcCCHHHHHH---H--HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99988875421 0 1235556778899999999999999999999888765310 11234566666666542 1 1
Q ss_pred -HHHHHHHHHHHHHHHhhCc
Q 013663 235 -AEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 235 -~~~~~~a~~~l~~l~~~~~ 253 (438)
.-|...|+..+..+.+.+.
T Consensus 225 GgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 225 GGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred CcchHHHHHHHHHHHHhhCc
Confidence 2466677778888887654
No 226
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.32 E-value=9.4 Score=35.41 Aligned_cols=182 Identities=14% Similarity=0.076 Sum_probs=117.1
Q ss_pred HHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhccC-------ch-HHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 91 QQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIA-------GW-LELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~~-------~w-~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
+..+-..|-++|+-. +..|-.++-.+...|++..+++ -| +.++|.+-.+ ...+|..-+.++....-.
T Consensus 52 k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~a----si~Vkp~lL~i~e~~~lp 127 (307)
T PF04118_consen 52 KLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYA----SIQVKPQLLDIYEKYYLP 127 (307)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHhcC
Confidence 344555666677643 7788888888888888775432 24 4566655443 456777777777666655
Q ss_pred cccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHH
Q 013663 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLV 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a 241 (438)
++..+. ..+..++..++.++.+++.++...+++.+..+...+... .+.+.+...+- .++..|..|
T Consensus 128 L~~~L~--------p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~a 192 (307)
T PF04118_consen 128 LGPALR--------PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGA 192 (307)
T ss_pred ccHHHH--------HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHH
Confidence 555332 346778888888999999999999998888877665433 23333433222 246678877
Q ss_pred HHHHHHHHhhCc------------ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 242 CAAFNLLIEVRP------------SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 242 ~~~l~~l~~~~~------------~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+.-+..-..... ..+.+...-++..+..++.|++.-|+..+++++.+-..
T Consensus 193 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 193 LNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred HHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 776654432211 12223334566777788888888889999998887543
No 227
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.08 E-value=4.2 Score=36.21 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=67.5
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
..+.+.+..++.-.|+-+|.+++++-. |.-+|.|.+.+.+. .+-+|+-|+.+|+.+..
T Consensus 190 ~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------- 249 (289)
T KOG0567|consen 190 NALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------- 249 (289)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------------
Confidence 345677777899999999999998854 57788888887753 57899999999987643
Q ss_pred CcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
+..++.|.+.+.|+..-||..+.-+|-.
T Consensus 250 -----e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 250 -----EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5677888899999988888877666643
No 228
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.04 E-value=5.8 Score=38.55 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=98.9
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC-CHhh-HHHHHHHhhh---hhhc---CcHHHHHHHHHHHH
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-SPSN-QQYIKSELLP---CLGA---ADRHIRSTVGTIVS 118 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l-~~~~-~~~i~~~ll~---~l~~---~~~~vr~~~a~~la 118 (438)
.+.++.+..++.. +.-..+=+.+..+|||.+.+.-..- .... ...+-..+++ .|.. .++.+..-+..+-.
T Consensus 227 ~~~i~~l~~i~k~--s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e 304 (429)
T cd00256 227 LSLIQDLSDILKE--STKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTE 304 (429)
T ss_pred ccHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4567777777775 5666666678888888876431100 0001 1112212222 2222 25555544443333
Q ss_pred HHHHhh-ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-CCCHHH
Q 013663 119 VVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSL 196 (438)
Q Consensus 119 ~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~v 196 (438)
.+-... -...|.+....+....-.=+|.|+...++. ++... +. ..--.++..+.+.+. +.++.+
T Consensus 305 ~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~-----EN~~k-f~--------~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 305 ELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR-----ENADR-LN--------EKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH-----HHHHH-HH--------hcchHHHHHHHHHHhcCCCcce
Confidence 333221 123455555554432222234444333332 11111 11 112456677777774 345666
Q ss_pred HHHHHHHHHHHHcccchh--hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 197 RKLSLGSVNQFIMLMPSA--LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 197 r~~al~~l~~~~~~~~~~--~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
-.-|+.=++.++.+.|.. ...-+. .=..+.++++++|++||.+|+.|+..++-.
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 677788888999988732 111110 123455667889999999999999988754
No 229
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.03 E-value=6.4 Score=40.11 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=93.1
Q ss_pred HHHHHHhhccC-chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCH
Q 013663 117 VSVVVQLGGIA-GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHT 194 (438)
Q Consensus 117 la~i~~~~~~~-~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~ 194 (438)
...|.+..+.. --..++|.|..++.+.+...+..++..+..+.+.++.. ..-..++|.+.+.. ...+.
T Consensus 374 mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~----------~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 374 MDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP----------FVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH----------HHHHHHHHHhhcchhcccch
Confidence 33344444433 34679999999999999999999999999999888743 23466888887654 45789
Q ss_pred HHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
.|+..++-|++.+++.+... ..++.+ ..++...+..++.+....+.....++-..+.-..-....++|+++-.
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~--~v~d~~-lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~l 516 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKA--AVLDEL-LPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPL 516 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhh
Confidence 99999999999998655321 112233 33344445567778777777777776554441112234566665544
No 230
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.89 E-value=13 Score=36.16 Aligned_cols=344 Identities=13% Similarity=0.097 Sum_probs=168.1
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh------hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHH
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA------YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~------w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i 120 (438)
|.+...+..++.. ...+++.++...++--.+... +..... .....-...+..|..++..+...++.+++.+
T Consensus 52 ~~y~~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 52 GQYVKTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhh-ccccchHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 5677788888875 777888888888887666531 100000 0011223455667778899999999999999
Q ss_pred HHhhccCchHH----HHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC--C
Q 013663 121 VQLGGIAGWLE----LLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--H 193 (438)
Q Consensus 121 ~~~~~~~~w~~----ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~ 193 (438)
+...+...-.. +++.+...++++ +...+..|+.+++.+...-.... .+ .-...++.+...+... +
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~------~f--~~~~~v~~L~~~L~~~~~~ 200 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF------AF--VLADGVPTLVKLLSNATLG 200 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH------HH--HHccCHHHHHHHHhhcccc
Confidence 86543222222 444555555543 35667778888888876444321 01 0011345555555432 3
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCccc--ccccHHHHHH---
Q 013663 194 TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSF--LEPHLRNLFE--- 265 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~li~--- 265 (438)
.++.-.++=|+--+ .+.++ ....+ ..+++.+..+++. ..+++-+-++.+|..++....+. -..+...++.
T Consensus 201 ~Ql~Y~~ll~lWlL-SF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l 278 (429)
T cd00256 201 FQLQYQSIFCIWLL-TFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV 278 (429)
T ss_pred HHHHHHHHHHHHHH-hccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh
Confidence 34444444333221 12222 22222 2466666666653 34677777888888887643211 0111122221
Q ss_pred -HHhhhhcC---CChHHHhHHHHHHHHhhccC-CChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCC
Q 013663 266 -YMLQVNKD---TDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (438)
Q Consensus 266 -~~~~~~~~---~~~~v~~~a~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~ 340 (438)
-+++.++. .|+++. ..++++....+.. .....+..|...+....+.|-..- .+...|-+.-. .++|-+-.+
T Consensus 279 ~~~l~~L~~rk~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H-~se~FW~EN~~-kf~~~~~~l- 354 (429)
T cd00256 279 LKTLQSLEQRKYDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVH-KSEKFWRENAD-RLNEKNYEL- 354 (429)
T ss_pred HHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCC-CCchHHHHHHH-HHHhcchHH-
Confidence 12222221 356655 4444444443320 001124566666665555553221 12233421100 000000000
Q ss_pred CccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhHHh--HHHHHHHHhccCCCCcchhhHHHHHHH
Q 013663 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPT--LMPVIQAKLSASGDEAWKDREAAVLAL 416 (438)
Q Consensus 341 ~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~--l~~~l~~~l~~~~~~~w~~r~aal~~l 416 (438)
. ..+. +-.+ ..+| ...-..|..=++.++...|. .++.. .=..+.+++++++ ..+|.-|+.|+
T Consensus 355 l----k~L~--~iL~-~s~d----~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d---~~Vr~eAL~av 420 (429)
T cd00256 355 L----KILI--HLLE-TSVD----PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED---PNVRYEALLAV 420 (429)
T ss_pred H----HHHH--HHHh-cCCC----cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC---HHHHHHHHHHH
Confidence 0 0000 0000 0000 11113344556666666533 44333 2345677788888 89999999999
Q ss_pred HHHhh
Q 013663 417 GAIAE 421 (438)
Q Consensus 417 ~~l~~ 421 (438)
+-+.-
T Consensus 421 Qklm~ 425 (429)
T cd00256 421 QKLMV 425 (429)
T ss_pred HHHHH
Confidence 98753
No 231
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.67 E-value=18 Score=37.16 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhc--cCch-----HHHHHHHHHHhc----cCChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 105 ADRHIRSTVGTIVSVVVQLGG--IAGW-----LELLQALVTCLD----SNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~--~~~w-----~~ll~~l~~~l~----~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
+.+.+|..+..+++.++.... ...+ .++++.+.+.+. ..+...+..++.+|+.+ +
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g---------- 474 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----G---------- 474 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----C----------
Confidence 367888888899998887542 2222 356666665553 23455566666666532 1
Q ss_pred CcchhhhHHHHHHHhcc---CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Q 013663 174 AECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFN 246 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~---~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~a~~~l~ 246 (438)
....++.+...+. ..+..+|.+|+.+|..+....|.... +.++.+.. +.++++|..|+-.+.
T Consensus 475 ----~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-------~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 475 ----HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ-------EVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ----ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH-------HHHHHHHcCCCCChHHHHHHHHHHH
Confidence 2334444444444 34678999999999988776664332 22333333 345789988876654
No 232
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.33 E-value=1.6 Score=39.41 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=63.1
Q ss_pred HHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHh-hCC-CCHHHHHHHHHHHHHHHhhCccccc
Q 013663 181 FLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-SND-PSAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 181 il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~-~~~-~~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
.+..+.+.+-| .+.+.|.+|+.++..= ..+.+.++-++.-+... .++ .+-++....+.....+.++.+-++.
T Consensus 198 YF~kvisal~dEs~~~~r~aAl~sLr~d-----sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvd 272 (450)
T COG5095 198 YFDKVISALLDESDEQTRDAALESLRND-----SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVD 272 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-----ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeec
Confidence 34444444444 5788999999988541 11222222222222211 111 2345566677777778888778889
Q ss_pred ccHHHHHHHHhhhh-----cCCC-----hHHHhHHHHHHHHhhcc
Q 013663 258 PHLRNLFEYMLQVN-----KDTD-----DDVALEACEFWHSYFEA 292 (438)
Q Consensus 258 ~~~~~li~~~~~~~-----~~~~-----~~v~~~a~~~~~~~~~~ 292 (438)
||+.+++|-++.++ .... -.+|.-|..++.-++..
T Consensus 273 PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~ 317 (450)
T COG5095 273 PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSN 317 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhh
Confidence 99999999877763 1222 23787777777766654
No 233
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.13 E-value=17 Score=35.85 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHH-HHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH
Q 013663 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (438)
Q Consensus 107 ~~vr~~~a~~la~i~~~~~~~~w~~ll~-~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (438)
-.-|-.+|.++|.+...-+...+..++. .|..++++.....|..|..++.+.+......-.. .....+.+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-------~~~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-------PPPQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-------ccHHHHHHHH
Confidence 4457788999999988766677888887 5899999999999999999999988877653211 0124566667
Q ss_pred HHhccC
Q 013663 186 LQFFQS 191 (438)
Q Consensus 186 ~~~l~~ 191 (438)
...+++
T Consensus 174 ~~~L~~ 179 (441)
T PF12054_consen 174 LEILEN 179 (441)
T ss_pred HHHHcC
Confidence 777764
No 234
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=90.56 E-value=17 Score=34.96 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhh-c---cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCC-cchhhhHHHH
Q 013663 110 RSTVGTIVSVVVQLG-G---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA-ECPINIFLPR 184 (438)
Q Consensus 110 r~~~a~~la~i~~~~-~---~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~-~~~~~~il~~ 184 (438)
-+.+|...+-+..++ . .-.-|.++..+..++.+++.+....+..+++.+++.-..-+. +. ...++.++..
T Consensus 290 ~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~-----~v~~~~~nkL~~~ 364 (604)
T KOG4500|consen 290 FKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQ-----LVQKDFLNKLISC 364 (604)
T ss_pred HHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHH-----HHHHHHHHHHHHH
Confidence 345566666666543 1 122356999999999999988888888888888765433211 00 1234445554
Q ss_pred HHH-hccCCCHHHHHHHHHHHHHHHc
Q 013663 185 LLQ-FFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 185 l~~-~l~~~~~~vr~~al~~l~~~~~ 209 (438)
+.+ ---+.+.+++-+++.++.+++-
T Consensus 365 l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 365 LMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHhcCCCccchhHHHHHHHHHhccc
Confidence 444 3335678888899999988753
No 235
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.55 E-value=6.4 Score=31.99 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=61.2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~~~ 253 (438)
-...+..+.+-+++.++.|...|+..+-.++...+..|...+ ..+++.+..++.+ .++.|+..+++.+...+..++
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 466777888888899999999999999999998887666544 3577777777765 678999999999988887654
No 236
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=90.06 E-value=1.9 Score=31.54 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=53.3
Q ss_pred HHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHH
Q 013663 221 QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (438)
Q Consensus 221 ~ll~~l~~~~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~ 287 (438)
.++..+..++ ..++.++|...++|+..++..+++.++.--+.++..+-...++.++++...|++.+.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444444443 346789999999999999999988887777788888888888888999999987654
No 237
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.05 E-value=17 Score=34.24 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-C-CC--------HHHHHHHHH
Q 013663 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-S-PH--------TSLRKLSLG 202 (438)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~-~~--------~~vr~~al~ 202 (438)
+..+...+.+..+.....++..|..++.-.+.....++-+.++ .....++.++..=. . .. +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd-~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFD-FSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 7777788888777777789999988887333221111000010 11223333332111 1 01 389999999
Q ss_pred HHHHHHcccchhhHH-hH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH------HHHHHHHhhhhcC
Q 013663 203 SVNQFIMLMPSALFV-SM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL------RNLFEYMLQVNKD 273 (438)
Q Consensus 203 ~l~~~~~~~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~------~~li~~~~~~~~~ 273 (438)
.+.+++...+..... .+ +.++..++.-+..+++++-...++++.+-+-..+ .+.... +..+..+......
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHHhcc
Confidence 999998877543322 22 2457777777766567788888888887654333 332222 2333444444333
Q ss_pred CCh----HHHhHHHHHHHHhhccC
Q 013663 274 TDD----DVALEACEFWHSYFEAQ 293 (438)
Q Consensus 274 ~~~----~v~~~a~~~~~~~~~~~ 293 (438)
.++ .++..+.+|+..+|..+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 344 88999999999988763
No 238
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=89.93 E-value=2.1 Score=31.27 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 177 PINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 177 ~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
.-..++.++...+. .++.+||...++|+..++....+.+..-.+.++..+.....++++.+-..|++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34667788888764 46899999999999999987665555556678888877777777888888888764
No 239
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.72 E-value=4.7 Score=42.41 Aligned_cols=143 Identities=11% Similarity=0.141 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (438)
.||...-..+|+++-.. ..--..++|.+.+-+.- ....+|...+.+++.+|-.+.. .++..+|.+.
T Consensus 946 ~vra~~vvTlakmcLah-~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa------------m~d~YiP~I~ 1012 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAH-DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA------------MTDRYIPMIA 1012 (1529)
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH------------HHHHhhHHHH
Confidence 44444444455544322 12234588888887763 3345666666777777765543 2577889999
Q ss_pred HhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHH
Q 013663 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY-LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (438)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~l-l~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~ 265 (438)
..|.|+++-||..++-.|.++++.- +.++=..+ +.-+.. +-|.++++|.-+=-++..+.......|. ...+++
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P~~f--~~~FVe 1086 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEPNFF--PLNFVE 1086 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 9999999999999999998887642 22221122 222222 3366789999998888888865444332 345666
Q ss_pred HHhh
Q 013663 266 YMLQ 269 (438)
Q Consensus 266 ~~~~ 269 (438)
+++.
T Consensus 1087 ~i~~ 1090 (1529)
T KOG0413|consen 1087 YIIA 1090 (1529)
T ss_pred HHHH
Confidence 6543
No 240
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.66 E-value=0.82 Score=28.21 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=23.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l 204 (438)
.+.+...+...+.|+++.||.+|++.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 367888999999999999999998753
No 241
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=89.51 E-value=5.3 Score=33.41 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=73.0
Q ss_pred hhhHhHHHHHHHHHHhccccccccC--CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHH
Q 013663 145 INHMEGAMDALSKICEDIPQVLDSD--VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (438)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~l 222 (438)
...+..++..+..+.+..+..+.+. .+.+....-..+.+.+.+.+..++..+-..+++++..++......+...++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999888766521 01111112255677777777777788888999999988876655555556666
Q ss_pred HHHHHH-hhCCC--CHHHHHHHHHHHHHHHh
Q 013663 223 LQGLFL-LSNDP--SAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 223 l~~l~~-~~~~~--~~~~~~~a~~~l~~l~~ 250 (438)
++.++. ++..+ ...-|..+++++.++.+
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 666655 44432 24678889999999886
No 242
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.32 E-value=3.2 Score=33.73 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHH
Q 013663 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQF 207 (438)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~ 207 (438)
=.+.+..|...+.+.++++...||.+|..++++++..+... -....++..+.+.+.+ .+..|+..++..+..|
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e------vask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE------VASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH------HhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999865421 1235677777788877 7899999999999998
Q ss_pred Hcccc
Q 013663 208 IMLMP 212 (438)
Q Consensus 208 ~~~~~ 212 (438)
...++
T Consensus 109 ~~~f~ 113 (144)
T cd03568 109 ADEFK 113 (144)
T ss_pred HHHhC
Confidence 87654
No 243
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.18 E-value=21 Score=34.12 Aligned_cols=347 Identities=14% Similarity=0.092 Sum_probs=167.9
Q ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc--CCHhh----HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHH
Q 013663 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--MSPSN----QQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (438)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~--l~~~~----~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~ 121 (438)
.++..++.+++. ...++.-++...++--.+..+=.. +-... +...-...+..+...+..+-...+.+++.++
T Consensus 65 ~~v~~fi~LlS~--~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSH--IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhch--hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 455566677764 444555556776665555432111 11111 1111234566777888999998999999998
Q ss_pred Hhhc----cCchHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHH
Q 013663 122 QLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (438)
Q Consensus 122 ~~~~----~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 196 (438)
.... .....=.+..|...+++ .+...+..+..||+.+...-..+.. +- ...-..-+++.+. -+..+.++
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~--~v--~adg~~~l~~~l~--s~~~~~Ql 216 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA--FV--IADGVSLLIRILA--STKCGFQL 216 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe--ee--ecCcchhhHHHHh--ccCcchhH
Confidence 7542 23444556667766766 5677888899999988765443211 00 0011233333333 22345666
Q ss_pred HHHHHHHHHHHHcccchhhHHhHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCccc--ccccHHHHHH----HH
Q 013663 197 RKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSF--LEPHLRNLFE----YM 267 (438)
Q Consensus 197 r~~al~~l~~~~~~~~~~~~~~~~--~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~li~----~~ 267 (438)
+-..+-|+-- +.+.| .+...++ .+++.+..++++ ..++|-+-++.++..+++..+.. .+.+..+++. -.
T Consensus 217 QYqsifciWl-LtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~ 294 (442)
T KOG2759|consen 217 QYQSIFCIWL-LTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT 294 (442)
T ss_pred HHHHHHHHHH-hhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH
Confidence 6555555432 22222 2223332 356666666553 33677777788888888766532 1111112211 12
Q ss_pred hhhhc---CCChHHHhHHHHHHHHhhccCC-ChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCcc
Q 013663 268 LQVNK---DTDDDVALEACEFWHSYFEAQL-PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRF 343 (438)
Q Consensus 268 ~~~~~---~~~~~v~~~a~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~ 343 (438)
++.++ -.|++++ ..++++.+-..... .-..+..|...+....+.|-..-- +...|.+.-+.=.++.-+-+|--.
T Consensus 295 l~~L~~rkysDEDL~-~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk-~e~FW~eNa~rlnennyellkiL~ 372 (442)
T KOG2759|consen 295 LQSLEERKYSDEDLV-DDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK-SEKFWRENADRLNENNYELLKILI 372 (442)
T ss_pred HHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc-ccchHHHhHHHHhhccHHHHHHHH
Confidence 22222 2466665 45555555332200 001123444544444444332211 122332110000000000000000
Q ss_pred ccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhHHhH--HHHHHHHhccCCCCcchhhHHHHHHHHHH
Q 013663 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTL--MPVIQAKLSASGDEAWKDREAAVLALGAI 419 (438)
Q Consensus 344 ~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l--~~~l~~~l~~~~~~~w~~r~aal~~l~~l 419 (438)
+. .+ -.. +..+=..|..=++.++...|. .++..+ =+.+...++++| +++|.-|+.|...+
T Consensus 373 ---~l-----Le-~s~----Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d---~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 373 ---KL-----LE-TSN----DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED---PEVRYHALLAVQKL 436 (442)
T ss_pred ---HH-----Hh-cCC----CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC---chHHHHHHHHHHHH
Confidence 00 00 000 011112355556666666655 444332 235677788888 89999999999887
Q ss_pred hhc
Q 013663 420 AEG 422 (438)
Q Consensus 420 ~~~ 422 (438)
.-+
T Consensus 437 m~~ 439 (442)
T KOG2759|consen 437 MVH 439 (442)
T ss_pred Hhh
Confidence 643
No 244
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.76 E-value=10 Score=42.28 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=100.7
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~ 125 (438)
+|++...+... ..+ +..-.+|..+...++..+-.+-.......+..|+..+...+.+.+..||..++.+++.+.....
T Consensus 1524 ~~e~l~~l~~~-~~~-~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1524 QPEFLRDLKML-TAD-SSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred HHHHHHHHHHH-hcc-cchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 34555545442 222 6777888877777777665443335667788999999999999989999999999999987642
Q ss_pred cCchHHHHHHHHHHhc--cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc---CCCHHHHHHH
Q 013663 126 IAGWLELLQALVTCLD--SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ---SPHTSLRKLS 200 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l~--~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~---~~~~~vr~~a 200 (438)
...-+.-........+ +.+....++|+..|+.++-.+|.. ++..+|..+..+. ..+..++.++
T Consensus 1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~------------vP~wip~~L~~Ls~fa~e~~~i~~tv 1669 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYV------------VPLWIPKPLMNLSSFARESAAIKQTV 1669 (1710)
T ss_pred cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcccc------------chhhhHHHHHHHHhhcCCchHHHHHH
Confidence 2222222223333332 234567899999999999888863 3445665555443 2446778888
Q ss_pred HHHHHHHHccc
Q 013663 201 LGSVNQFIMLM 211 (438)
Q Consensus 201 l~~l~~~~~~~ 211 (438)
-+++..+-...
T Consensus 1670 kktvseFrrth 1680 (1710)
T KOG1851|consen 1670 KKTVSEFRRTH 1680 (1710)
T ss_pred HHHHHHHHHHh
Confidence 88887765443
No 245
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.74 E-value=7 Score=31.25 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=69.4
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
+++...-..+|..|..- +..=.+.+..|...++++++++...|+.+|..+++.++..+...+ ....++.
T Consensus 15 ~~D~~~il~icd~I~~~-----~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i------~s~~fl~ 83 (133)
T cd03561 15 EPDWALNLELCDLINLK-----PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV------ADKEFLL 83 (133)
T ss_pred CccHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH------hhHHHHH
Confidence 34544444444444322 233467889999999999999999999999999999987543211 1134555
Q ss_pred HHHHhccC---CCHHHHHHHHHHHHHHHcccch
Q 013663 184 RLLQFFQS---PHTSLRKLSLGSVNQFIMLMPS 213 (438)
Q Consensus 184 ~l~~~l~~---~~~~vr~~al~~l~~~~~~~~~ 213 (438)
.+.+.+.. .+..||..++..+..|...++.
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 56666654 5889999999999999877653
No 246
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.67 E-value=15 Score=31.84 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=82.9
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-CChhhHhHH-HHHHHHHHhccccccccCCC
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGA-MDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~a-l~~l~~l~~~~~~~~~~~~~ 171 (438)
....+..+..++....|..++.++........ ++.++.+...+.. +++.+.... ..+++.+...
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~---------- 117 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLT----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK---------- 117 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH----------
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh----------
Confidence 33444445556666666666665554332211 1245555555553 345444333 2333332211
Q ss_pred CCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
-+...+.+.+.+.+++.-+|..++-++..++.. ..++.++..+...+.|++.-+++.+..+|.++...
T Consensus 118 ------~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 118 ------HPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp ------HGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred ------hHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 145677888899999999998887776554433 23445666666667788888999999999988887
Q ss_pred CcccccccHH
Q 013663 252 RPSFLEPHLR 261 (438)
Q Consensus 252 ~~~~~~~~~~ 261 (438)
+|+...+++.
T Consensus 186 ~~~~v~~~l~ 195 (213)
T PF08713_consen 186 DPDEVLEFLQ 195 (213)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7765544443
No 247
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=6.5 Score=43.64 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHH
Q 013663 109 IRSTVGTIVSVVVQLGG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (438)
Q Consensus 109 vr~~~a~~la~i~~~~~--~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (438)
.++....+++.++.... ++.|+.+...+....++.+...|..|+..+..+.+.+++... ..+++++|.+.
T Consensus 1517 ~~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~--------~lL~q~iPfLa 1588 (1621)
T KOG1837|consen 1517 SDIVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVI--------VLLPQSIPFLA 1588 (1621)
T ss_pred hhHHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhH--------HhhhhhhHHHH
Confidence 33344444555544432 233999999999999998999999999999999998887543 35789999999
Q ss_pred HhccCCCHHHHHHHHHHHHH
Q 013663 187 QFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~ 206 (438)
+.+.|.+.+|...+.+....
T Consensus 1589 EL~ED~~~~Ve~~~q~li~q 1608 (1621)
T KOG1837|consen 1589 ELMEDEDDEVECLCQKLIRQ 1608 (1621)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 99999999998777764433
No 248
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=88.46 E-value=28 Score=37.10 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=101.5
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc------c------CCC
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD------S------DVP 171 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~------~------~~~ 171 (438)
+.-+.||+.+...++.+....+...--.++..+++...++--..++.+-.++..-......... + ++.
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~d~~ 562 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQDFK 562 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhhhcc
Confidence 5678899999999999987764433345666655554443333333333322211111111000 0 000
Q ss_pred -CCC---cch-hhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013663 172 -GLA---ECP-INIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (438)
Q Consensus 172 -~~~---~~~-~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l 245 (438)
.++ +.. -..++..+...++ +....|+++|++.+.+...+... ...++..+-.|..++.|+-..+|+.++..|
T Consensus 563 ~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~--~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sl 640 (1529)
T KOG0413|consen 563 LKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE--ASKFEVVLSILQMLCRDRMVSVRKTGADSL 640 (1529)
T ss_pred hhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch--hhcchhHHHHHHHHhcCcchHHHHHHHHHH
Confidence 000 111 2335556666666 67788999999999998887642 222334455566667787778999999999
Q ss_pred HHHHhhCcccc---cccHHHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 246 NLLIEVRPSFL---EPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 246 ~~l~~~~~~~~---~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
+++....|-.+ +.++..+++. +.+.+-.|...|..++..
T Consensus 641 tel~~~~pr~~~~~~~wl~~li~~----~~d~es~v~e~a~~~i~k 682 (1529)
T KOG0413|consen 641 TELMLRDPRLFSLSSKWLHTLISM----LNDTESDVTEHARKLIMK 682 (1529)
T ss_pred HHHHhhCchhhhhhHHHHHHHHHH----HhccHHHHHHHHHHHHHH
Confidence 99998877665 2233333333 334444555555554444
No 249
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.40 E-value=1.4 Score=37.62 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=74.2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh---Ccc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV---RPS 254 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~---~~~ 254 (438)
....+|.|+.+|.+.+..-|-.|-..+..++...++.+.+.+++++..+-..+...|.++...+++.+..++.. .+.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 46678999999998888888888888888888878888888899988888888877888888888888887754 346
Q ss_pred cccccHHHHHHHHh
Q 013663 255 FLEPHLRNLFEYML 268 (438)
Q Consensus 255 ~~~~~~~~li~~~~ 268 (438)
.+.|+..+++|.+-
T Consensus 192 aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLN 205 (262)
T ss_pred hhhhHHHHhhhhhh
Confidence 77788888888764
No 250
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.17 E-value=15 Score=31.27 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=56.4
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
+.+++...+++..+|..+..++..+.+....++ ...+|.++....|+++..|..|...+..+.+..+..+.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 455666678889999999999998887643333 36899999988888999999999999988887776543
No 251
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.10 E-value=1.2 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=27.0
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
...+|.|.+++.+++.+++..|+.+++++.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 447899999999999999999999999875
No 252
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=87.89 E-value=17 Score=31.51 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhc-CcHHHH
Q 013663 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIR 110 (438)
Q Consensus 32 ~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~-~~~~vr 110 (438)
.|+-|.....+.....+....+..+.. +..-+.|.+|+.++..... ..+.+....+. ..+.. .+..+.
T Consensus 35 lr~lak~~~~~~~~~~~~~~l~~~L~~---~~~~E~~~la~~il~~~~~----~~~~~~~~~~~----~~~~~~~~W~~~ 103 (213)
T PF08713_consen 35 LRKLAKDIYKELKLSEELYELADELWE---SGYREERYLALLILDKRRK----KLTEEDLELLE----KWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHCTSHHHHHHHHHHHC---SSCHHHHHHHHHHHHHCGG----G--HHHHHHHH----HCCCCCCCHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHcC---CchHHHHHHHHHHhHHHhh----hhhHHHHHHHH----HHhccCCcchhh
Confidence 445555545555544223333333443 5568889888888855332 23333222332 22222 456565
Q ss_pred HHH-HHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 111 STV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 111 ~~~-a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
-.+ ..+++.+.... +.+.+.+.+++.++++-.|+.|+.++...... ...+.++..+...+
T Consensus 104 D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------------CHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHc
Confidence 555 45566665432 67889999999999988888887766443332 23577888888889
Q ss_pred cCCCHHHHHHHHHHHHHHHcccchhhHH
Q 013663 190 QSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (438)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (438)
.|++..||.+.-.+|..+....|+...+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999999998887776654433
No 253
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=41 Score=37.97 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=123.8
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhh----cCcHHHHHHHHHHHHHHHHhh----cc
Q 013663 55 FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG----AADRHIRSTVGTIVSVVVQLG----GI 126 (438)
Q Consensus 55 ~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~----~~~~~vr~~~a~~la~i~~~~----~~ 126 (438)
.+... +.+..+|.+........++..|+.+ ++.+. +....+-...-..+..+.... .+
T Consensus 1043 ~im~~--s~s~~Irelv~rC~~~nikSGWk~i------------f~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~ 1108 (1514)
T KOG0929|consen 1043 HIMKR--SSSAEIRELVVRCISSNIKSGWKNI------------FKIFTTAASDSSKNIVELAFETVSKILQELFENVFP 1108 (1514)
T ss_pred HHhhc--cCcchhHHHHHhhhhhhhhhhhhHH------------HHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhch
Confidence 44443 7788888888877777777777642 22221 222222222223333333322 22
Q ss_pred ---CchHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccc-cccCCC-------CCCcchhhhHHHHHHHhccCCCH
Q 013663 127 ---AGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQV-LDSDVP-------GLAECPINIFLPRLLQFFQSPHT 194 (438)
Q Consensus 127 ---~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~-~~~~~~-------~~~~~~~~~il~~l~~~l~~~~~ 194 (438)
..+.+.++-+.+...+ ..+++...++..+...+..+.+. ....++ .........++-.+-...++...
T Consensus 1109 ~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~ 1188 (1514)
T KOG0929|consen 1109 QEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRL 1188 (1514)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHH
Confidence 3344555555554443 23344444444444333333221 000000 01111223333344445556788
Q ss_pred HHHHHHHHHHHHHHcccchhhHH-hHHHHHHHHHHhhC----CC------CH--HHHHHHHHHHHHHHhhCcccccccHH
Q 013663 195 SLRKLSLGSVNQFIMLMPSALFV-SMDQYLQGLFLLSN----DP------SA--EVRKLVCAAFNLLIEVRPSFLEPHLR 261 (438)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~-~~~~ll~~l~~~~~----~~------~~--~~~~~a~~~l~~l~~~~~~~~~~~~~ 261 (438)
.||..+++.+..++...++.|.+ +...++..++.+.. +. ++ ..-..|+..++.+...+++.+...++
T Consensus 1189 ~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~ 1268 (1514)
T KOG0929|consen 1189 EVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLP 1268 (1514)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766643 34556565555432 11 11 22335677777777788888777788
Q ss_pred HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 262 ~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.++..+..+++.++..+......++..+...
T Consensus 1269 ~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1269 KVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 8888888888888888877777766666544
No 254
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=87.66 E-value=17 Score=32.53 Aligned_cols=144 Identities=11% Similarity=0.080 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHH
Q 013663 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQ 224 (438)
Q Consensus 149 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~ 224 (438)
-.|+..|+.++.+-.... .++..+++-.+-++++.-+. +-+.+|..++..++.+++.-......++ ..+++
T Consensus 68 cnaLaLlQ~vAshpetr~-----~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 68 CNALALLQCVASHPETRM-----PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHH-TTTHH-----HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHcChHHHH-----HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence 345555655555333221 11122344444444444433 2577999999999999986544333332 25677
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhh---------CcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCC
Q 013663 225 GLFLLSNDPSAEVRKLVCAAFNLLIEV---------RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (438)
Q Consensus 225 ~l~~~~~~~~~~~~~~a~~~l~~l~~~---------~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~ 295 (438)
..+..++.+++--|.-|.-.+.++... .++.|......+-..+.+..++.+..+-+..+.+-..+++.+..
T Consensus 143 lcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 143 LCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 777777666666677777777766642 12333222222222333345566778878888888888887543
Q ss_pred hh
Q 013663 296 HE 297 (438)
Q Consensus 296 ~~ 297 (438)
.+
T Consensus 223 r~ 224 (262)
T PF04078_consen 223 RE 224 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 255
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=7.1 Score=43.28 Aligned_cols=109 Identities=19% Similarity=0.144 Sum_probs=82.7
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
+.-+..+++-+.--++..|..|+..+..++..... .....++.....+.+++.|.+..+|......+..++....+.+.
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455667777778889999999999998876532 22222444555566677788999999999999999999999999
Q ss_pred ccHHHHHHHHhhhhcCCChHHHhHHHHHHH
Q 013663 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (438)
Q Consensus 258 ~~~~~li~~~~~~~~~~~~~v~~~a~~~~~ 287 (438)
||++.++++.+-...|.+..|...|..-..
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~ 149 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFK 149 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHH
Confidence 999999999887777777777766664333
No 256
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.20 E-value=4.9 Score=31.51 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=59.5
Q ss_pred HHHHHHHHHhh--ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-
Q 013663 114 GTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ- 190 (438)
Q Consensus 114 a~~la~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~- 190 (438)
+..+..|++.. .+....+++..|...+++.++.++.-+|.+|.++|..-+..+... +..+ ..++..+.+.-.
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~----~~~~-~~~Ik~~~~f~g~ 93 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRE----LQRN-SAQIRECANYKGP 93 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHH----HHHh-HHHHHHHHHcCCC
Confidence 34555666554 346788999999999999889999999999999999877644311 0011 223333333222
Q ss_pred -C------CCHHHHHHHHHHHHHHHc
Q 013663 191 -S------PHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 191 -~------~~~~vr~~al~~l~~~~~ 209 (438)
| +...||..|-+++..+..
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHHhc
Confidence 1 246688888877766543
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.20 E-value=3.3 Score=33.58 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=69.6
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
+++...-..+|..|. .. ...=.+.+..|...+.++++++...|+.+|..++++++..+... -....++.
T Consensus 19 ~~dw~~ileicD~In----~~-~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e------vas~~fl~ 87 (142)
T cd03569 19 EPDLASILEICDMIR----SK-DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE------VASREFMD 87 (142)
T ss_pred ccCHHHHHHHHHHHh----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH------HhhHHHHH
Confidence 344444444444443 11 22335788999999999999999999999999999998755321 12355666
Q ss_pred HHHHhcc-CCCHHHHHHHHHHHHHHHcccc
Q 013663 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 184 ~l~~~l~-~~~~~vr~~al~~l~~~~~~~~ 212 (438)
.+.+.+. ..+..|+..++..+..|...++
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 6666665 5688999999999999987654
No 258
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.03 E-value=34 Score=34.00 Aligned_cols=177 Identities=11% Similarity=0.037 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (438)
..|..++.-++...+..+...-+++.......+... ..+.|+.++..|..+++.-...... .=..++..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~--------~R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL--------MRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH--------HHHHHHHHHh
Confidence 456677777777766655444444444444444433 4679999999999988765542110 0011222222
Q ss_pred HhccCCCHHHHHHHHHHHHHHHccc---chhhHHhHHHHHHHHHHhh-------C-------------CCCHHHHHHHHH
Q 013663 187 QFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLS-------N-------------DPSAEVRKLVCA 243 (438)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~ll~~l~~~~-------~-------------~~~~~~~~~a~~ 243 (438)
..-.+++...+..|+.+|..=.+.+ ...+.+.+...+..+++.. . +.+...-...+.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Confidence 2222345667888888886433322 2223333333343333110 0 012233446667
Q ss_pred HHHHHHhhCccccc-ccHHHHHHHHhhhhc-CCChHHHhHHHHHHHHhhcc
Q 013663 244 AFNLLIEVRPSFLE-PHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 244 ~l~~l~~~~~~~~~-~~~~~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+..+++.....+. ..+..++..++..+. ...++....++.++.++...
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y 207 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY 207 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 77777776666665 455666666665543 33444446777777777654
No 259
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.97 E-value=28 Score=32.92 Aligned_cols=199 Identities=15% Similarity=0.076 Sum_probs=100.1
Q ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHH----h
Q 013663 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ----L 123 (438)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~----~ 123 (438)
.....+..++.. ..++.....+...|-.-..+. +.+.-..+-+.+.+.|.+..+.+|+.-...++.+.. .
T Consensus 22 ~i~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 22 KIVQGLSPLLSK--ESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 345556666765 556666655555554444433 333334455566678888777799999999998886 2
Q ss_pred hccCchHHHHHHHHHHhc----cCChhh----HhHHHHHHHHHHhccccccccC--C-CCC-Ccchhh-hHHHHHHHhcc
Q 013663 124 GGIAGWLELLQALVTCLD----SNDINH----MEGAMDALSKICEDIPQVLDSD--V-PGL-AECPIN-IFLPRLLQFFQ 190 (438)
Q Consensus 124 ~~~~~w~~ll~~l~~~l~----~~~~~~----r~~al~~l~~l~~~~~~~~~~~--~-~~~-~~~~~~-~il~~l~~~l~ 190 (438)
........++|.+.+.+. ++.+.. -.+++-++. +........+.+ . ..+ .++.-. -+-+.+++-+
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl- 173 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL- 173 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence 223344566777666663 322221 122222222 110000000000 0 000 000000 0112222222
Q ss_pred CCCHHHHHHHHHHHHHHHcccchhhHHh-HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhCccc
Q 013663 191 SPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~--~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
.+.+...-.++++..++...+...... ...+-+++..++-++ .+++|+.|++.+.++....|..
T Consensus 174 -~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 174 -ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred -CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 223333345566656555544322221 233445555555455 7899999999999999888875
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.94 E-value=15 Score=29.77 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=59.0
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
-...+..+.+-+++.++.+...|+..+-.++......|...+ ..+++.+..++. ..++.|+..+++.+......+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 466778888889999999999999999999998776665443 356666666654 4568999999999988887654
No 261
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=86.85 E-value=29 Score=36.18 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=71.4
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhCc
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~-~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
++...++..+-..+..+ .-|..++..|+.++..-|..+..... .+++.|+..+ .|.+.-+-..|+-+|..++-..|
T Consensus 66 P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 34566777777777754 67888999999999877755544332 4566566554 47778888899999999999999
Q ss_pred ccccccHHHHHHHHhhhh
Q 013663 254 SFLEPHLRNLFEYMLQVN 271 (438)
Q Consensus 254 ~~~~~~~~~li~~~~~~~ 271 (438)
..+.+|++.++......+
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 999999999998876654
No 262
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.65 E-value=3.4 Score=33.30 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=68.6
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
+++...--.+|..|. .. +..=.+.+..+...++++++++...||.+|..+++.++..+...+ ....++.
T Consensus 16 ~~dw~~ileicD~In----~~-~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev------as~~Fl~ 84 (139)
T cd03567 16 EEDWEAIQAFCEQIN----KE-PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV------GKFRFLN 84 (139)
T ss_pred CCCHHHHHHHHHHHH----cC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------HhHHHHH
Confidence 345544444444442 22 223357888899999999999999999999999999998654211 1244555
Q ss_pred HHHHhcc------CCCHHHHHHHHHHHHHHHcccc
Q 013663 184 RLLQFFQ------SPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 184 ~l~~~l~------~~~~~vr~~al~~l~~~~~~~~ 212 (438)
.+.+.+. ..+..|+...+..+..|...++
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6666664 2578999999999999887654
No 263
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.63 E-value=23 Score=31.53 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH--
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC-- 139 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~-- 139 (438)
..++....-....|.....+. + .....+.+.+......+....+..+-..+..+.+.. +..+|.+-+.+...
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~----~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHK----N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHFPFLQPLLLLLIL 85 (234)
T ss_pred CCChHHHHHHHHHHHHHhccC----c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHh
Confidence 556666665666665554432 1 222233333333333444555555566666666653 22334444444431
Q ss_pred -----hcc--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHccc
Q 013663 140 -----LDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 140 -----l~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~ 211 (438)
..+ .......+....+..+|+..|. +...+++.+...+ .+.++.++..|++++..+...-
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~------------~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD------------HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh------------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 111 1234555556788888888775 2577888888888 6778889999999999887431
Q ss_pred chhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhh--CcccccccHHHHHHHHhhhhcCCChH
Q 013663 212 PSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDD 277 (438)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~li~~~~~~~~~~~~~ 277 (438)
+. .+.....++..-++ +..+.+-+..++.+.-+... ..+....+...++..+++.....+.+
T Consensus 154 ---vv-d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 154 ---VV-DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred ---hc-cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 11 11223333333232 34466655555544433221 11233344567888888887765543
No 264
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.22 E-value=16 Score=29.44 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHh
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN------DPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~------~~~~~~~~~a~~~l~~l~~ 250 (438)
...+..+.+-+++.++.+...|+..|-.++......|...+ ..+++.+..++. ..+..|+..+++.+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999998876665444 245666666553 2457999999999988887
Q ss_pred hCc
Q 013663 251 VRP 253 (438)
Q Consensus 251 ~~~ 253 (438)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 665
No 265
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=39 Score=38.00 Aligned_cols=153 Identities=7% Similarity=-0.009 Sum_probs=93.0
Q ss_pred cCchHHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHH
Q 013663 126 IAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (438)
+..-++++..+.... .+.++.+|...+..++.++-.....+. +.+...+-..+...++|...+||+.|.+|+
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~-------~~~r~dI~~l~~s~l~D~~i~vre~Aa~~L 1593 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQ-------ELRRDDIRKLLESLLNDDQIEVREEAAKCL 1593 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhccc-------chhHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 344566777776433 345688888888888777654332211 245688888999999999999999999999
Q ss_pred HHHHcccchhhHHhHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHH
Q 013663 205 NQFIMLMPSALFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEA 282 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a 282 (438)
..++......+.. ........... ..+....-.++..|+.++-..|..+..+++..+..+-....++ .-+++++
T Consensus 1594 sgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tv 1669 (1710)
T KOG1851|consen 1594 SGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTV 1669 (1710)
T ss_pred HHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHH
Confidence 9988764211111 11111111111 1123334467888999999998888666666555554444433 4455554
Q ss_pred HHHHHHh
Q 013663 283 CEFWHSY 289 (438)
Q Consensus 283 ~~~~~~~ 289 (438)
-+.+..+
T Consensus 1670 kktvseF 1676 (1710)
T KOG1851|consen 1670 KKTVSEF 1676 (1710)
T ss_pred HHHHHHH
Confidence 4434433
No 266
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.83 E-value=23 Score=36.99 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhc-CCChHHHhHHHHHHHHhhccCCChhh
Q 013663 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHEN 298 (438)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~~~~~~~ 298 (438)
.++..+-..+.. +..|..++..|+.++...|..+..... .+++-++++++ |.+.-+...|+.++..+.-. ++..
T Consensus 70 ~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~--ip~~ 145 (668)
T PF04388_consen 70 HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH--IPSS 145 (668)
T ss_pred HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc--ccch
Confidence 345555555543 468999999999999988877655554 67777888875 56777788888888887654 5567
Q ss_pred HHhhHHHHHHHHHhccC
Q 013663 299 LKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 299 ~~~~l~~l~~~l~~~l~ 315 (438)
+.++++.++.+..+.+.
T Consensus 146 l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 146 LGPHLPDLFNIFGRLLS 162 (668)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 78899999988776653
No 267
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.82 E-value=57 Score=35.43 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcc-CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTC 139 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~ 139 (438)
++.-.+|+.|.+..-+.+...-.. +.-.......+.-+++=......-|..+...+....... ..+.-.+++..++..
T Consensus 211 SqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~s 290 (1048)
T KOG2011|consen 211 SQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDS 290 (1048)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666778888877665554432110 000001111111112211122222333333444333221 112223345544443
Q ss_pred -----hccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc--
Q 013663 140 -----LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-- 212 (438)
Q Consensus 140 -----l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-- 212 (438)
.++-.+..|..++.-|+.-+..+|+.+-+ ...+.-+-=.|.|.+..||..++++|..+...-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~----------dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~ 360 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS----------DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK 360 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhc----------chHHHHhcceeecCccHHHHHHHHHHHHHHhccccc
Confidence 35667899999999999999999986532 2233444446778999999999999999887621
Q ss_pred hhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 213 SALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 213 ~~~~~~~~~ll~~l~~~~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
..+...+..+=..+.+++ .|-+..||...+..+..... +..+. ..=+..+...+-+.+..++..|.+++..
T Consensus 361 ~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~--~g~L~---d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 361 DKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS--SGLLS---DKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc--ccccC---hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 122222233333444444 34445666655554443332 22221 1233344555666788888888887766
No 268
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.67 E-value=3.8 Score=33.90 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=73.9
Q ss_pred CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--H
Q 013663 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--D 220 (438)
Q Consensus 143 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~ 220 (438)
.++++|..++-++..+.+..+..+ .+.+-..+...+.+++.+-...++.++..++...|+.....+ +
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~-----------~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~e 85 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEF-----------KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSE 85 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTT
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 467889999999988864333321 222333333444444444556678888877776664322211 2
Q ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhh--CcccccccHHHHHHHHhhhhc-CCChH-HHhHHHHHHH
Q 013663 221 QYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNK-DTDDD-VALEACEFWH 287 (438)
Q Consensus 221 ~ll~~l~~~~~--~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~li~~~~~~~~-~~~~~-v~~~a~~~~~ 287 (438)
.+++.+..++. ..+..+...+++++...+.. +-.. .....++++-+..+ ++++. +|..|.-.+.
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~---I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTF---ISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHC---CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHH---HHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 44555555554 56678888999998866632 1222 23455666666664 34455 7777765444
No 269
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=85.52 E-value=9.4 Score=31.90 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHcccchhhH---------HhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHH
Q 013663 194 TSLRKLSLGSVNQFIMLMPSALF---------VSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~---------~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l 263 (438)
...|..+++.+..+++..+..+. ..+ ..+.+.+.+....+++.+-..+++.+..+...+.+.++..++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766554333 111 24555565555555688889999999999988888888888888
Q ss_pred HHHHhh-hhcCC--ChHHHhHHHHHHHHhhcc
Q 013663 264 FEYMLQ-VNKDT--DDDVALEACEFWHSYFEA 292 (438)
Q Consensus 264 i~~~~~-~~~~~--~~~v~~~a~~~~~~~~~~ 292 (438)
++.++. .+..+ ..+-|..++|.+..+++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 887776 44432 346778899999998875
No 270
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.41 E-value=17 Score=29.00 Aligned_cols=77 Identities=9% Similarity=0.066 Sum_probs=58.8
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH--HHHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhC
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSND---PSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~ll~~l~~~~~~---~~~~~~~~a~~~l~~l~~~~ 252 (438)
-...+..|.+-++++++.++..|+..+-.++...+..|...+. .++..+..++.. .++.|+..+++.+......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4667788889999999999999999999999988766654432 445556565543 46789999999998888765
Q ss_pred cc
Q 013663 253 PS 254 (438)
Q Consensus 253 ~~ 254 (438)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 54
No 271
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.36 E-value=36 Score=32.69 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHh--hhccCCHhhHHHHHHHhhhhhhcC--cHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHH
Q 013663 66 EIRQAAGLLLKNNLRT--AYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGGI----AGWLELLQALV 137 (438)
Q Consensus 66 ~~R~~A~~~Lk~~i~~--~w~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~la~i~~~~~~----~~w~~ll~~l~ 137 (438)
.+-..|..+|...+-+ .=+.++.+....+-...+..+.++ +..+.+..-.+++. ...++ ..-++.+-..+
T Consensus 61 ~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 61 RLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred HHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHH
Confidence 3333444444444321 123478888887878888888653 55555555555542 11222 23334333333
Q ss_pred HHhcc--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch--
Q 013663 138 TCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-- 213 (438)
Q Consensus 138 ~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-- 213 (438)
..+.+ ++..+....+.++..++...|..+. .+...=+|.++..+-+....+|..|..++..+...++.
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~--------~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQFPQQMI--------KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH
Confidence 34443 3456677788889888888887543 34555678888888888888998887777665444431
Q ss_pred hhHH--------------hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc---ccccccHHHHHHHHhhhhcCCCh
Q 013663 214 ALFV--------------SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP---SFLEPHLRNLFEYMLQVNKDTDD 276 (438)
Q Consensus 214 ~~~~--------------~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~li~~~~~~~~~~~~ 276 (438)
.+.. ....+.+.+..++.+++ -...+.+.+..++..-+ ..-.+++...+...-.+..+.+.
T Consensus 211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCH
Confidence 1111 11123333444444421 12334444433332212 12224567777777788888999
Q ss_pred HHHhHHHHHHHHhhcc
Q 013663 277 DVALEACEFWHSYFEA 292 (438)
Q Consensus 277 ~v~~~a~~~~~~~~~~ 292 (438)
.+|..|+..|..+...
T Consensus 289 ~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 289 QVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 272
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=85.08 E-value=1.6 Score=26.52 Aligned_cols=27 Identities=33% Similarity=0.247 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 132 LLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
.+|.|++.+.++++.+++.|+++|+.+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344444455444555555555555444
No 273
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.94 E-value=3.4 Score=32.10 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHh
Q 013663 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~ 123 (438)
.+..|..+|.. +.++.+-..|+.-+...++++=..-.--.+-..|..++++|.++++.||..|-.++..+..+
T Consensus 44 llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 45678888854 56888888888888888876411111112345678899999999999999999999888754
No 274
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=84.87 E-value=92 Score=37.45 Aligned_cols=208 Identities=16% Similarity=0.182 Sum_probs=122.5
Q ss_pred HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc---------CchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhcc
Q 013663 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~---------~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~ 162 (438)
.++..+...+...+..+|..++.....+.+.... +.....+..+..... ++++..|...+..+. +..
T Consensus 481 ~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~ 557 (2341)
T KOG0891|consen 481 FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERF 557 (2341)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cch
Confidence 3444455556667889999988888777765421 113344444444332 345655554444332 111
Q ss_pred ccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHH-HhhCCCCHHHHHHH
Q 013663 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF-LLSNDPSAEVRKLV 241 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~~~~~~~a 241 (438)
... ...+..+...+..+.+....++.++...++++....|..+.+.+....-... .+..+.-..++..+
T Consensus 558 ~~~----------laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~ 627 (2341)
T KOG0891|consen 558 DAQ----------LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEES 627 (2341)
T ss_pred hhh----------hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHH
Confidence 111 1235667778888999999999999999998888777655665554332222 22223333445555
Q ss_pred HHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccC
Q 013663 242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
...+..++...+..+.+|+..++..++..+.+.+..+-..+.+.+..+|... ...+..++..+++.+.+.+.
T Consensus 628 a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~--g~~~~~~~~~~~~~~~~~l~ 699 (2341)
T KOG0891|consen 628 AKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVG--GEEMVKWVDELFSLIIKMLQ 699 (2341)
T ss_pred HHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhc--cchhhhccchHHHHHHHHHH
Confidence 5556666666667777888888877777777666666666666677776641 12333444444444444443
No 275
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=84.82 E-value=48 Score=33.70 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh-h--CcccccccHHHHHHHHhhhhc----CCChHHHhHHHHHHHHhhcc
Q 013663 239 KLVCAAFNLLIE-V--RPSFLEPHLRNLFEYMLQVNK----DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 239 ~~a~~~l~~l~~-~--~~~~~~~~~~~li~~~~~~~~----~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+++..+..++. . ..+.+.|.+..+++.++.+++ ....-.|..++..+..++.+
T Consensus 398 i~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~s 458 (661)
T KOG2256|consen 398 VHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRS 458 (661)
T ss_pred HHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhh
Confidence 356666776665 2 335566777777777776654 35678899999999999875
No 276
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.44 E-value=61 Score=36.69 Aligned_cols=202 Identities=15% Similarity=0.186 Sum_probs=105.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHH
Q 013663 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 184 (438)
.+..||..+..|++.-. ...|..++..+-....+.+......++..+..+........-+ +-+ ..+...++.
T Consensus 1049 ~s~~Irelv~rC~~~ni----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~---~~~-~sf~d~v~c 1120 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSNI----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFP---QEM-DSFKDCVKC 1120 (1514)
T ss_pred CcchhHHHHHhhhhhhh----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhch---hhh-HHHHHHHHH
Confidence 46678888888888222 3589999998888777777788888888887666655442111 000 112334444
Q ss_pred HHHhccC-CCHHHHHHHHHHHHHHHcccch-----hhH------------HhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 185 LLQFFQS-PHTSLRKLSLGSVNQFIMLMPS-----ALF------------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 185 l~~~l~~-~~~~vr~~al~~l~~~~~~~~~-----~~~------------~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
+.....+ ..+.....+++.+.-++....+ .+. .+++ ++-.+..+..+....+|+.+++.+-
T Consensus 1121 l~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP-~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1121 LEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFP-MLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeeh-hHhhhhHHhhccHHHHHHHHHHHHH
Confidence 4444432 1222222233222222221111 011 1122 2222333344667899999999999
Q ss_pred HHHhhCcccccccH-HHHHHHHhhhh---c------CCChHHHhHHHHHHHHhhccC-CChhhHHhhHHHHHHHHHhccC
Q 013663 247 LLIEVRPSFLEPHL-RNLFEYMLQVN---K------DTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 247 ~l~~~~~~~~~~~~-~~li~~~~~~~---~------~~~~~v~~~a~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
.+...+++.|.++. ..++..++.+. + ..++.....+.+.+..++... ...+.+...++.++..+..+++
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~ 1279 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIK 1279 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998887755 45555443332 1 112333333333333333320 1223344555555555555554
No 277
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=84.32 E-value=4.7 Score=30.56 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=48.5
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc-ccccHHHHHHHHhhhhc
Q 013663 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHLRNLFEYMLQVNK 272 (438)
Q Consensus 213 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~li~~~~~~~~ 272 (438)
+.+.++++.++..+...+.+-.+++|..+++.|.-+++.+|+. +..+...+++..+..+.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 3456777888888888888888999999999999999999988 66666677777666654
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.08 E-value=8.8 Score=30.68 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVN 205 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~ 205 (438)
.=.+.+..|...+.++++.+...|+.+|..+++.++..+... -....++..+...+.+. .+.|+..++..+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~e------v~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~ 107 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLE------VASKEFLNELVKLIKPKYPLPLVKKRILELIQ 107 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH------HHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 346788899999999999999999999999999998765421 12355677777777664 3349999999999
Q ss_pred HHHcccc
Q 013663 206 QFIMLMP 212 (438)
Q Consensus 206 ~~~~~~~ 212 (438)
.|...+.
T Consensus 108 ~W~~~f~ 114 (133)
T smart00288 108 EWADAFK 114 (133)
T ss_pred HHHHHHc
Confidence 9887653
No 279
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=4.2 Score=34.91 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCC-C
Q 013663 217 VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-P 295 (438)
Q Consensus 217 ~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~-~ 295 (438)
.+++.+...+.. .+-..|--|-+.+.++....++.+.|.+++++.-+-..+...|.++...++..+..+...-. .
T Consensus 114 ~yLp~F~dGL~e----~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 114 PYLPLFFDGLAE----TDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred HHHHHHhhhhhh----cCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 344444444433 23335566667778888888888889999999988888888899999888888877765422 3
Q ss_pred hhhHHhhHHHHHHHHH
Q 013663 296 HENLKEFLPRLVPVLL 311 (438)
Q Consensus 296 ~~~~~~~l~~l~~~l~ 311 (438)
...+-||..+++|++-
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 4567899999999773
No 280
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.48 E-value=9.6 Score=30.78 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHH---HHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTS---LRKLSLGS 203 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~---vr~~al~~ 203 (438)
.=.+.+..|...+..+++++...|+.+|..++++++..+...+ .-..++..+.+.+.+. ... ||..+++.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev------~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~l 112 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV------ASKEFLDELVKLIKSKKTDPETPVKEKILEL 112 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH------TSHHHHHHHHHHHHHTTTHHHSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH------hHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Confidence 3467889999999999999999999999999999987654211 1245677777766643 222 99999999
Q ss_pred HHHHHccc
Q 013663 204 VNQFIMLM 211 (438)
Q Consensus 204 l~~~~~~~ 211 (438)
+..|...+
T Consensus 113 l~~W~~~f 120 (140)
T PF00790_consen 113 LQEWAEAF 120 (140)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998766
No 281
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=83.38 E-value=2.9 Score=31.73 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=49.6
Q ss_pred cccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhh-HHhhHHHHHHHHHhccCc
Q 013663 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN-LKEFLPRLVPVLLSNMIY 316 (438)
Q Consensus 253 ~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~~~l~~ 316 (438)
++.+.||++.++.++...+.+-..+||..++.|+..+.+. .+.. +..+..++++..+..+..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~--~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEH--APDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH--CChHhHhhhHHHHHHHHHHHHCC
Confidence 3567789999999999999999999999999999998886 3333 566777777777766653
No 282
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=83.01 E-value=45 Score=31.99 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=51.0
Q ss_pred hhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccchhhHHhHHH--HHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 179 NIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQ--YLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 179 ~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
-+++..+++.+... ++.+-.-|+.=++.++++.|+.-. .+.. -=..+.++++++|++||.+|+.++..++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 45777888888765 466666788888899998885321 1111 123456677889999999999999888754
No 283
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.99 E-value=25 Score=28.37 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCC-CC-HH--HHHHHHHHHHHHHhh
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PS-AE--VRKLVCAAFNLLIEV 251 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~-~~-~~--~~~~a~~~l~~l~~~ 251 (438)
....+..|.+-+.++++.+...|+..+-.++...+..|...+ ..++..+..++.+ .. +. |+..+++.+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 466778888999999999999999999999998876665544 3566666665542 22 33 899999999888877
Q ss_pred C
Q 013663 252 R 252 (438)
Q Consensus 252 ~ 252 (438)
+
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 6
No 284
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.38 E-value=21 Score=27.56 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=54.5
Q ss_pred cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHh----c--cCCCHHHHHH
Q 013663 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----l--~~~~~~vr~~ 199 (438)
+....+++..|...+.+.++.+..-||.+|.+++++.+..+...+ .-..++..++.. . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i------~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV------ASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH------HHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 466788999999999999999999999999999999987653211 011122222221 1 1347889999
Q ss_pred HHHHHHHHH
Q 013663 200 SLGSVNQFI 208 (438)
Q Consensus 200 al~~l~~~~ 208 (438)
+...+..|.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 988887664
No 285
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=81.38 E-value=18 Score=29.03 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhh------cCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhc-
Q 013663 32 DKSQIWQQLQQYS------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA- 104 (438)
Q Consensus 32 ~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~- 104 (438)
+|++....+..+. ..|+++..+.+.+.+ ++..+.....+|+.......+ . -..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~----~~~~~~~~L~iL~~l~eEi~~-~---------------~~~~ 63 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS----SPQHLELVLRILRILPEEITD-F---------------RRSS 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHT-S---------------HCCH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHh-h---------------hchh
Confidence 4555555554433 246777777777653 466666777777765543321 0 000
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCC----hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh
Q 013663 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~----~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (438)
....-|+.+-..+..- -+.++..+.+.+.... ......++.++.+.+.-++...- ....
T Consensus 64 ~~~~r~~~l~~~l~~~--------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i---------~~~~ 126 (148)
T PF08389_consen 64 LSQERRRELKDALRSN--------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI---------INSN 126 (148)
T ss_dssp SHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH---------HSSS
T ss_pred hhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh---------ccHH
Confidence 0111122222222222 2455555555554322 67788899999998886554310 1134
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHH
Q 013663 181 FLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l 204 (438)
+++.+++.+++++ ++..|++||
T Consensus 127 ~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 127 LLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHcCCHH--HHHHHHHhC
Confidence 8888889886554 488888876
No 286
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=81.37 E-value=39 Score=30.13 Aligned_cols=86 Identities=16% Similarity=0.346 Sum_probs=58.2
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHcccc---h---------------------------hhHHhHHHHHHHHHHhh
Q 013663 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---S---------------------------ALFVSMDQYLQGLFLLS 230 (438)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---~---------------------------~~~~~~~~ll~~l~~~~ 230 (438)
+=..+++.+.+.++.||..|+|.+..++.... . .+...-..++..|+..+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 33456667778888999999999988875431 0 01111125778888777
Q ss_pred CCC--CHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 231 NDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 231 ~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
.++ ++.+-..++.+|..+++..|.++ +.+++.++..
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~RP~~~----~~Il~~ll~~ 161 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQRPQFM----SRILPALLSF 161 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHhc
Confidence 654 47788899999999999999875 4555555443
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.79 E-value=29 Score=27.68 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=57.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhCc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~--~~~~~~~a~~~l~~l~~~~~ 253 (438)
-...+..+.+-++++++.+...|+..+-.++......|...+ ..+++.+..++.+. .+.|+..+++.+......+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 356777888889999999999999999999998876665444 35667676666542 24489999998888887653
No 288
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=78.95 E-value=4 Score=33.77 Aligned_cols=109 Identities=11% Similarity=0.159 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH--HHHHHHHh
Q 013663 191 SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYML 268 (438)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~li~~~~ 268 (438)
....++|..|.=++..+.+..++.+.+.+..++..++ .+.+.+-...++.++..+....|+.-...+ +.+++.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~---~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLL---DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3566789888888888865544555554445544443 332333566666666666555444322211 35666666
Q ss_pred hhhc--CCChHHHhHHHHHHHHhhccCCChhhHHhh
Q 013663 269 QVNK--DTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (438)
Q Consensus 269 ~~~~--~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~ 302 (438)
..+. .++..+...+++.+..-|..+..+..+..+
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~ 128 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN 128 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 5555 578888999999999988764333333333
No 289
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.83 E-value=59 Score=30.68 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=112.4
Q ss_pred hHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 90 NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 90 ~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
.-..|-+.+..++. +.++........+++.-........=+.++..+...+.+..+.+|+.-+..++.++...+. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~---~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN---S 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC---c
Confidence 33455566666665 4566666666666655544332223367889999999998888999999999998871111 0
Q ss_pred CCCCCCcchhhhHHHHHHHhc----cCCCHHHHHHHHHHHHHHHc---ccchhhHH------hH-----HHH-H-HHHHH
Q 013663 169 DVPGLAECPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIM---LMPSALFV------SM-----DQY-L-QGLFL 228 (438)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l----~~~~~~vr~~al~~l~~~~~---~~~~~~~~------~~-----~~l-l-~~l~~ 228 (438)
. .......++|.+.+.+ .++.+......+.+...++. ...+.... .+ +.+ + +.+++
T Consensus 96 ~----~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvys 171 (339)
T PF12074_consen 96 D----SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYS 171 (339)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHh
Confidence 0 0123455666666655 44432222111111111111 00000000 00 011 1 12222
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCC--ChHHHhHHHHHHHHhhccCCChhhHHhhHHH
Q 013663 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDT--DDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (438)
Q Consensus 229 ~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~ 305 (438)
-+ .+++.....++++..+...+++...... ..+...++..+-+. ..++|+.|...+..+... ..+. .-..
T Consensus 172 kl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~--~~~~---l~~~ 244 (339)
T PF12074_consen 172 KL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS--NPEL---LSKS 244 (339)
T ss_pred cc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--ChHH---HHHH
Confidence 21 2345566777788777776665544433 44555566665544 789999999998887654 1111 3334
Q ss_pred HHHHHHhccC
Q 013663 306 LVPVLLSNMI 315 (438)
Q Consensus 306 l~~~l~~~l~ 315 (438)
++..+..++.
T Consensus 245 li~~l~~~l~ 254 (339)
T PF12074_consen 245 LISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 290
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=78.55 E-value=12 Score=27.66 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHH
Q 013663 105 ADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSN--DINHMEGAMDALSKI 158 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l 158 (438)
+...+|..+|.+++.|++..+ +.--+.++..+.+.+.++ +.....||+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999998753 344567777777777754 456888999988776
No 291
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.55 E-value=5 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=27.6
Q ss_pred HHHHHHHhhcc-CchHHHHHHHHHHhccCChhhHhHHHHH
Q 013663 116 IVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDA 154 (438)
Q Consensus 116 ~la~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~r~~al~~ 154 (438)
+++.++..++. -.-+.+...+...+.++++.+|..|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45556655532 3446788888888888888888888765
No 292
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=78.52 E-value=62 Score=30.76 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHh-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhc
Q 013663 194 TSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK 272 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~ 272 (438)
.++....+.+|..++.+.. .+.+. -+.++..+...+.+ ...+.++.++.-.+-.-|..+.++++.++.-+-+...
T Consensus 211 ~D~~~~~~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHS-HFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 5567777888888877642 11111 12455555554433 2345667777766666677777777777665554433
Q ss_pred CCChHHHhHHHHHHHHhhccC-CCh-hhHHhhHHHHHHHHHhccC
Q 013663 273 DTDDDVALEACEFWHSYFEAQ-LPH-ENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 273 ~~~~~v~~~a~~~~~~~~~~~-~~~-~~~~~~l~~l~~~l~~~l~ 315 (438)
...+....+||+..+++.+ ... +....-+..++.++++++.
T Consensus 287 --t~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 287 --TPNMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred --chhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 3457778899999999876 332 3335667778888888775
No 293
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.30 E-value=1.9e+02 Score=36.11 Aligned_cols=162 Identities=18% Similarity=0.150 Sum_probs=95.7
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
-+++.+++++...+...+..+..++..+.......+.+.....--+....+++.+.++..++...-|...+-.+..++..
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 46889999999888899999999998887655443322111111234677888889999888888887766666666666
Q ss_pred cchh-hHHhHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHHHhhCc-----cccc-ccHHHHHHHHhhhhcCCChHHH
Q 013663 211 MPSA-LFVSMDQYLQGLFLLSNDPSAEVRK----LVCAAFNLLIEVRP-----SFLE-PHLRNLFEYMLQVNKDTDDDVA 279 (438)
Q Consensus 211 ~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~----~a~~~l~~l~~~~~-----~~~~-~~~~~li~~~~~~~~~~~~~v~ 279 (438)
+|.. +.+....++++++..+.+...++.. .+-.++..+...+- +.-. .....++..+...+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 6522 2233345566665555442211111 22222222222110 0000 1123344444455567788999
Q ss_pred hHHHHHHHHhhcc
Q 013663 280 LEACEFWHSYFEA 292 (438)
Q Consensus 280 ~~a~~~~~~~~~~ 292 (438)
..+.+++..+++.
T Consensus 1144 ~~~~~~L~~i~~~ 1156 (3550)
T KOG0889|consen 1144 EFSQKLLRLISEL 1156 (3550)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888876
No 294
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=78.27 E-value=16 Score=29.20 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.......+..+....+..|+.+..+-..+++++.+++.+.++.++..|-++-....+.
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 4556677888888888999998888889999999998877889999999888887776
No 295
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.81 E-value=47 Score=29.55 Aligned_cols=101 Identities=8% Similarity=0.087 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC---------cccccccH
Q 013663 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR---------PSFLEPHL 260 (438)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~---------~~~~~~~~ 260 (438)
+.+.+|..++..++.+++.-.+....++ ..+++.+...+..+++.-+.-|.-.+.++.... .+.|.. +
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~a-v 215 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSA-V 215 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHH-H
Confidence 5678999999999999987665444333 357787778777777777777777777766421 122311 2
Q ss_pred HHHH-HHHhhhhcCCChHHHhHHHHHHHHhhccC
Q 013663 261 RNLF-EYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (438)
Q Consensus 261 ~~li-~~~~~~~~~~~~~v~~~a~~~~~~~~~~~ 293 (438)
..++ ..+.+..+..+..+-+-++.+...++..+
T Consensus 216 ~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 216 ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 2222 23344455567777778888888887753
No 296
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.13 E-value=29 Score=30.78 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=77.1
Q ss_pred hHH-HHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 129 WLE-LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 129 w~~-ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
.|- +.|++-....+ +.+..|..++.+++.+++.-.+++.. + -...+++|.+++.+..++..-+..|.-++..
T Consensus 121 iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~----f--Ll~TeIVPlCLrime~GSelSKtvA~fIlqK 194 (293)
T KOG3036|consen 121 IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIR----F--LLTTEIVPLCLRIMESGSELSKTVATFILQK 194 (293)
T ss_pred ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHH----H--HHHhhhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444 44666555444 45789999999999999977665321 0 1246789999999999999989888888887
Q ss_pred HHcccc---------hhhHHhHHHHHH-HHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 207 FIMLMP---------SALFVSMDQYLQ-GLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 207 ~~~~~~---------~~~~~~~~~ll~-~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
++..-. +.|. .+..+++ .+.++.+.+++.+.+.+++|..++..+
T Consensus 195 IlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 195 ILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 764321 1111 1233443 334455667788888888888877653
No 297
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.96 E-value=39 Score=37.52 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=69.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHHhh----ccCchHHHHHHH-HHHhccC------C-------hhhHhHHHHHHHHHHh
Q 013663 99 LPCLGAADRHIRSTVGTIVSVVVQLG----GIAGWLELLQAL-VTCLDSN------D-------INHMEGAMDALSKICE 160 (438)
Q Consensus 99 l~~l~~~~~~vr~~~a~~la~i~~~~----~~~~w~~ll~~l-~~~l~~~------~-------~~~r~~al~~l~~l~~ 160 (438)
.++-.+....||+.|++.+=+|.... +++.|...+-.+ +..+.+. + .+..+....+++-|++
T Consensus 1003 ~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIak 1082 (1610)
T KOG1848|consen 1003 ADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAK 1082 (1610)
T ss_pred HHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHH
Confidence 33334678999999999999998654 456687654333 3333311 1 2344667777877777
Q ss_pred cccccccc--CCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 161 DIPQVLDS--DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 161 ~~~~~~~~--~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
-++..+.. +.+++ ....+.++.-+.....+.++++..+|++++..+..
T Consensus 1083 lf~e~fk~llnln~f-~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1083 LFSENFKLLLNLNGF-LDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 77664321 01111 13455566666667778999999999999987654
No 298
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.61 E-value=13 Score=39.22 Aligned_cols=94 Identities=10% Similarity=0.118 Sum_probs=70.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc---chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
+..|+......+.+++..+|..|++++...+..+ ++.+.|.+....+.+...+...++-+-..|++|+-.+.+..++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 3456666777888999999999999998765554 3556666667777777777777888889999999999988887
Q ss_pred cccc-cHHHHHHHHhhhh
Q 013663 255 FLEP-HLRNLFEYMLQVN 271 (438)
Q Consensus 255 ~~~~-~~~~li~~~~~~~ 271 (438)
++.. ....++|.+-..+
T Consensus 881 Fv~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 7654 3456666655443
No 299
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.03 E-value=22 Score=32.58 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=39.2
Q ss_pred cchhhhhhHHHHHHHHHhhh-chhhH--HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhh
Q 013663 363 NVWNLRKCSAAALDVLSNVF-GDEIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~-~~~~~--~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~ 421 (438)
....+|..-.++|-.++..- |.+.+ ..+.|.+...-... ++...|+++......+.+
T Consensus 256 pdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e--~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 256 PDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWE--EDEDIREACEQVVQMLVR 315 (353)
T ss_pred CChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCC--CcHHHHHHHHHHHHHHHh
Confidence 34678888888888777665 44665 34666776654332 226789999988888877
No 300
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=76.02 E-value=24 Score=27.46 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=60.0
Q ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcch
Q 013663 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (438)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (438)
.|+.|......|......++...-.. +++...+.+.+...++..+...+.++..++......... .+
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~~a------~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~-------~f 71 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHASHA------KEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGS-------EF 71 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHH-------HH
Confidence 34555555666666666666544321 467777777777766778888999999998877543111 11
Q ss_pred hhhHHHHHHH----hccCCCHHHHHHHHHHHHHHHc
Q 013663 178 INIFLPRLLQ----FFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 178 ~~~il~~l~~----~l~~~~~~vr~~al~~l~~~~~ 209 (438)
...+.|.+.. .....++++|....+.+.-|-+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 72 GDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 2222232222 2223346788888888877766
No 301
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=75.17 E-value=46 Score=33.53 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=69.1
Q ss_pred ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch--hhHHh
Q 013663 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--ALFVS 218 (438)
Q Consensus 141 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~--~~~~~ 218 (438)
.+-++..|..++..|+.-+..+|+.+.+ -..+...--+|.|.+..||....+++--++...|. .+...
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k----------~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRK----------ILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHh----------hhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3446778888888888888888876532 11333344567788999999999999999888763 23334
Q ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhh
Q 013663 219 MDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 219 ~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~ 251 (438)
+..+...++.++. |.+- ||..+.+.++.+...
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 4455555555543 4445 999999988877654
No 302
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.87 E-value=5.5 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.9
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
..++.+.+++.+++.+++..|+.++.++.
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788888888889999999999998864
No 303
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=74.70 E-value=49 Score=27.61 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHH-c
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI-M 209 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~-~ 209 (438)
++-|.|+.++..++ .+...+..|+.++..+...+-. +-+....++...+...- .+. . ..|+..+..+- .
T Consensus 3 eikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~----~~~~~W~eL~d~Ils~~-~~e-~--~kA~~IF~~L~~~ 72 (174)
T PF04510_consen 3 EIKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFD----LQEGGWDELSDCILSLS-ENE-P--VKAFHIFICLPMP 72 (174)
T ss_pred chHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHh----cCCCCchhHHHHHHHhh-ccc-h--HHHHHHHHhCCch
Confidence 45688888887643 3345666777777666553210 00112344443333322 111 2 34555555544 2
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCC---HHHHHHHHHH----HHHHHhhCcccccccHHHHHHHHhhhh----cCCCh-H
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPS---AEVRKLVCAA----FNLLIEVRPSFLEPHLRNLFEYMLQVN----KDTDD-D 277 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~---~~~~~~a~~~----l~~l~~~~~~~~~~~~~~li~~~~~~~----~~~~~-~ 277 (438)
...+.+.+.+..+++.+.+.+.+|. .+....|+.. ...+.+... . ...+..+++.+++.. ....+ .
T Consensus 73 l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~-~-~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 73 LYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM-R-VDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc-H-HHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 3345567778888888888777663 2323334332 233332211 1 134455555555543 34444 6
Q ss_pred HHhHHHHHHHHhh
Q 013663 278 VALEACEFWHSYF 290 (438)
Q Consensus 278 v~~~a~~~~~~~~ 290 (438)
....|++-+-++.
T Consensus 151 ~l~rgl~~~e~~v 163 (174)
T PF04510_consen 151 FLRRGLRDFESFV 163 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776555543
No 304
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.23 E-value=43 Score=26.29 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=51.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH---HHHHHHHHhhCCC--------CHHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSNDP--------SAEVRKLVCAAFN 246 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~ll~~l~~~~~~~--------~~~~~~~a~~~l~ 246 (438)
...++..|.+-|++.++.|+..||+++-.++..-++.|..++. .++..+.++-..+ ...||..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 5678888999999999999999999999999888777765554 2444444443211 2478888877766
Q ss_pred HHH
Q 013663 247 LLI 249 (438)
Q Consensus 247 ~l~ 249 (438)
.+.
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 543
No 305
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.77 E-value=18 Score=43.88 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHhccCC---------CHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013663 177 PINIFLPRLLQFFQSP---------HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~---------~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~ 247 (438)
.+..++|.+++.+.+. ..++|..+++.+.++... +.+.++...++..+.+++..++++...-|++.+.+
T Consensus 46 ~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~--e~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~ 123 (3550)
T KOG0889|consen 46 FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHN--EVFKPFSQELLKVLMRVLTNDNEENAILCLKIITD 123 (3550)
T ss_pred HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHH
Confidence 3678889998888753 466899999999887643 55777888899999998887777888899999999
Q ss_pred HHhhCcccccccHHHHHHHHhhh
Q 013663 248 LIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 248 l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
+.+.+...+..++..++.++.+.
T Consensus 124 l~r~f~~~~~~~v~~fl~~V~~l 146 (3550)
T KOG0889|consen 124 LFRQFKSLVEQHVQPFLDIVIDL 146 (3550)
T ss_pred HHHhhchHHHHHHHHHHHHHHHH
Confidence 99988777777777777776543
No 306
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=70.77 E-value=11 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=26.2
Q ss_pred hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh
Q 013663 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~ 124 (438)
...+++|+.+++.|...++..|..+..+|+.+.+..
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 356899999999998877888888889998887643
No 307
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.62 E-value=40 Score=35.89 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=64.9
Q ss_pred HhhHHHHHHHhhh---hhhcCcHHHHHHHHHHHHHHHHhh--cc--------CchHHHHHHHHHHhccCChhhHhHHHHH
Q 013663 88 PSNQQYIKSELLP---CLGAADRHIRSTVGTIVSVVVQLG--GI--------AGWLELLQALVTCLDSNDINHMEGAMDA 154 (438)
Q Consensus 88 ~~~~~~i~~~ll~---~l~~~~~~vr~~~a~~la~i~~~~--~~--------~~w~~ll~~l~~~l~~~~~~~r~~al~~ 154 (438)
+.+...+++.+.+ .|.+++-.+|-++-.++....-.. .+ ..| |.+++.+...++.....|+.+
T Consensus 795 ~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W----~~vie~~~~k~~L~v~~a~~~ 870 (1014)
T KOG4524|consen 795 PDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTW----PSVIECLLCKDPLIVQRAFSC 870 (1014)
T ss_pred ChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhh----hHHHHHHhcCchHHHHHHHHH
Confidence 3455555555544 456788888888777766544221 11 334 445666777889999999999
Q ss_pred HHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC
Q 013663 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (438)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (438)
+..+++..++++.+ +....++|.+-+.+++
T Consensus 871 i~~m~~~sgDFv~s-------R~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 871 IEQMGKYSGDFVAS-------RFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHH
Confidence 99999999988765 3578888888777765
No 308
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=70.22 E-value=29 Score=27.08 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 129 WLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 129 w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
-+.++|.+...+. +..++.+.+++.++..++...+=. ...++.++..+.+....... ...++-|+..+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---------~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l 72 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---------DEVLNALMESILKNWTQETV--QRQALICLIVL 72 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---------HHHHHHHHHHHHhccccchh--HHHHHHHHHHH
Confidence 4678999999999 677899999999999998766631 12344455555554444433 46678787776
Q ss_pred Hccc
Q 013663 208 IMLM 211 (438)
Q Consensus 208 ~~~~ 211 (438)
++..
T Consensus 73 ~q~q 76 (121)
T PF12397_consen 73 CQSQ 76 (121)
T ss_pred HHcc
Confidence 6543
No 309
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.01 E-value=80 Score=30.31 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHH-H-HcccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQ-F-IMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~-~-~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
-+..++..+..++++++.+|...|+-..++ . ...+.+.-...++.++++|....+ +=+..+...++..+..+++..+
T Consensus 338 ~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~ 417 (457)
T KOG2085|consen 338 IMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDP 417 (457)
T ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 345666777788899999998888766543 1 222211111223344455544332 1123444555566666666555
Q ss_pred ccc
Q 013663 254 SFL 256 (438)
Q Consensus 254 ~~~ 256 (438)
+.|
T Consensus 418 ~LF 420 (457)
T KOG2085|consen 418 KLF 420 (457)
T ss_pred HHH
Confidence 444
No 310
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=68.75 E-value=98 Score=35.07 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=44.7
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
..++..+++.|.+.+..+...++.+|.++.--.|+.- +++- .-+..+.+++.+....+...+..+|-.++...|
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 3456778888888888888888888888776555321 1111 112233344444555566666677777765553
No 311
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.51 E-value=42 Score=27.11 Aligned_cols=98 Identities=13% Similarity=0.189 Sum_probs=65.0
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (438)
+++...--.+|..|.. ....=.+.+..|...+.. .++.+...||.+|..++++++..+...+ ....++
T Consensus 16 ~~dw~~ileicD~In~-----~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei------ask~Fl 84 (141)
T cd03565 16 SEDWGLNMEICDIINE-----TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV------AKKDFI 84 (141)
T ss_pred CcCHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH------HHHHhh
Confidence 3444444444444431 122335788888888874 5788888899999999999998654211 123455
Q ss_pred HH-HHHhccC---CCHHHHHHHHHHHHHHHcccc
Q 013663 183 PR-LLQFFQS---PHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 183 ~~-l~~~l~~---~~~~vr~~al~~l~~~~~~~~ 212 (438)
.. +.+.+.. .+..|+...+..+..|...++
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 54 5566543 456899999999999887654
No 312
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=68.42 E-value=1e+02 Score=28.58 Aligned_cols=111 Identities=11% Similarity=0.247 Sum_probs=77.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccc----hhhHHhHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHhhC--cc
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGL-FLLSNDPSAEVRKLVCAAFNLLIEVR--PS 254 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~ll~~l-~~~~~~~~~~~~~~a~~~l~~l~~~~--~~ 254 (438)
+..++..++-+..++..-|+.++..++.-.. +.+..+.+.++.-. -.++.+.+.-.|+++.+.++++.-.. ..
T Consensus 168 ~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~ 247 (342)
T KOG1566|consen 168 FEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSA 247 (342)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHH
Confidence 3456777888888888889988888766432 23344444444433 33456777788999999999988543 34
Q ss_pred cccccHH--HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 255 FLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 255 ~~~~~~~--~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+..|+. .=+.++...++++...+...|++..-.+...
T Consensus 248 ~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 248 VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 5666665 5666777888999999999999866665544
No 313
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=68.39 E-value=2.3e+02 Score=32.72 Aligned_cols=192 Identities=16% Similarity=0.226 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhc------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHH--------H---H
Q 013663 34 SQIWQQLQQYSQ------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI--------K---S 96 (438)
Q Consensus 34 ~~A~~~L~~~~~------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i--------~---~ 96 (438)
.-++.+++.+.. ..-+-..++.++. +.+..-|..+-.+||++|... .++....... + .
T Consensus 360 ~l~eawiK~I~~~~~~~~hkv~Dl~lLlil~---s~~~~~~k~ie~ilkkKI~~g--~it~~ll~~~f~~~~~vL~~~f~ 434 (1426)
T PF14631_consen 360 DLSEAWIKAIESLEDASDHKVIDLWLLLILY---SINEDNRKSIEKILKKKIKSG--HITEQLLDQTFKGHSEVLKDYFP 434 (1426)
T ss_dssp HHHHHHHHHHHHGGGSTT--THHHHHHHHHH---HH-HHHHHHHHHHHHHHHTTT---S-HHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCccccchHHHHHHHHHH---cCCccchHHHHHHHHHHHHhC--cccHHHHHHHHhhhHHHHHHHHH
Confidence 345555655542 1122233444444 334466777888999998653 2332221111 1 1
Q ss_pred Hhhh----hhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 97 ELLP----CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 97 ~ll~----~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
.++. +|.++++.|+.-.+.....++.....-.-++++..|+..+.+++......|+.+|..+++..+..+.+
T Consensus 435 siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~---- 510 (1426)
T PF14631_consen 435 SILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP---- 510 (1426)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH----
Confidence 1222 23567899999888888888876421123789999999988888878889999999999877664421
Q ss_pred CCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHH
Q 013663 173 LAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLV 241 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a 241 (438)
...++..++..+.+ ...++|.. +..+..+.-..+.. ...+ ..+-=.+-+.+.++++..++..
T Consensus 511 -----fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~-~s~i~del~ivIRKQLss~~~~~K~~G 574 (1426)
T PF14631_consen 511 -----FATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSS-SSSIQDELHIVIRKQLSSSNPKYKRIG 574 (1426)
T ss_dssp -----THHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCccc-chhhHHHHHHHHHHhhcCCcHHHHHHh
Confidence 23334444444444 23456543 55555433211111 1111 1222223344556666666544
No 314
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=66.00 E-value=76 Score=30.20 Aligned_cols=91 Identities=9% Similarity=0.080 Sum_probs=60.2
Q ss_pred HHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHh
Q 013663 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLL 229 (438)
Q Consensus 152 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~ 229 (438)
...+..+|+-+....+ .-...+..+++.+++.++.|...|+..+.+++..+.+.|..-+ +.+...+..+
T Consensus 26 W~~IlDvCD~v~~~~~---------~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPD---------GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRAL 96 (462)
T ss_pred HHHHHHHHHhhcCCCc---------ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHH
Confidence 3445566666665321 2367888999999999999999999999999988876654332 2444445555
Q ss_pred hC-CCCHHHHHHHHHHHHHHHhh
Q 013663 230 SN-DPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 230 ~~-~~~~~~~~~a~~~l~~l~~~ 251 (438)
+. ...+.|+...-..+.+.++.
T Consensus 97 ~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 97 IESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HhhcccHHHHHHHHHHHHHHHHH
Confidence 54 23466666665555555553
No 315
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=65.53 E-value=11 Score=22.29 Aligned_cols=26 Identities=42% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 133 LQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
++.|.+.+.++++..+..++.+|+.+
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44444444444555555555555544
No 316
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.98 E-value=2.2e+02 Score=31.25 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 218 SMDQYLQGLFLL-----SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 218 ~~~~ll~~l~~~-----~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+..+++.++.. ..|-++++|..+++.++..+..+|+.|-. ...+.++-=.+.|.+.+||..++..+..+.+.
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 344555555543 35778999999999999999999988733 35555555567889999999999998888876
No 317
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=64.97 E-value=1.4e+02 Score=29.03 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=92.3
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-Cc--hHHHHHHHHHHhc-----cCChhhHhHHHHHHHHHHhccccc
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AG--WLELLQALVTCLD-----SNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~--w~~ll~~l~~~l~-----~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+.+.+.+.+.+.+.......+.+|+.+++.+.. -. -.+++..|+.++. +++-...++++.+|+.+.--++..
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 445666777778888888999999999988631 11 1345666666553 345677888999998877655542
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch---hhHHhHHHHHHHHHHhhCCCCH-HHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPSA-EVRKLV 241 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~-~~~~~a 241 (438)
- . ..-..+...++..+....+.|.-.-+.++..++...+. .+.++ +.++..+..+.+.+|. .+.-..
T Consensus 396 a--~------~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn-~~l~ekLv~Wsks~D~aGv~gES 466 (604)
T KOG4500|consen 396 A--H------FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKN-PELFEKLVDWSKSPDFAGVAGES 466 (604)
T ss_pred h--h------ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcC-HHHHHHHHHhhhCCccchhhhhh
Confidence 1 0 01133445566666666666765556666655554431 12222 3456666666666664 366677
Q ss_pred HHHHHHHHhh
Q 013663 242 CAAFNLLIEV 251 (438)
Q Consensus 242 ~~~l~~l~~~ 251 (438)
.+.+..++++
T Consensus 467 nRll~~lIkH 476 (604)
T KOG4500|consen 467 NRLLLGLIKH 476 (604)
T ss_pred hHHHHHHHHh
Confidence 7777777765
No 318
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=64.73 E-value=1.7e+02 Score=29.84 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=57.5
Q ss_pred cCCHhhHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhcc-Cc----hHHHHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 85 SMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGI-AG----WLELLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~-~~----w~~ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
.+.++....+...+-..+. +++..+|-.++..++.+++...+ +. -|.+.......+.+.++.+.+.|+.+++++
T Consensus 471 ~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 471 LLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred hcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 4677777777777777774 56777999999999999987632 22 233333334455788999999999999999
Q ss_pred Hhccc
Q 013663 159 CEDIP 163 (438)
Q Consensus 159 ~~~~~ 163 (438)
++.-+
T Consensus 551 Ae~T~ 555 (559)
T PF14868_consen 551 AERTS 555 (559)
T ss_pred hccCC
Confidence 87644
No 319
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=64.58 E-value=1.1e+02 Score=27.70 Aligned_cols=130 Identities=11% Similarity=0.033 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ 187 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 187 (438)
......|..|+.+++..+...-..++......-- .....-.-.+..++++.+.+ .+...++..++.
T Consensus 130 ~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~f---r~~~dfl~~v~~~l~~~f~P-----------~~~~~~l~~Ll~ 195 (262)
T PF14225_consen 130 QECIEIAEALAQVAEAQGLPNLARILSSYAKGRF---RDKDDFLSQVVSYLREAFFP-----------DHEFQILTFLLG 195 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHH
Confidence 4455778999999976544444444444332211 11111122233444444322 234667788899
Q ss_pred hccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 188 FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
.+.++..-+|..+++++..++..++-. .+.-.+++..+.++++.+ .-.+|++.+..++......
T Consensus 196 lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 196 LLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSGSP 259 (262)
T ss_pred HHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999887522 224456888888887653 4467777777776655443
No 320
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=63.53 E-value=51 Score=33.22 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=48.0
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 184 ~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
.++....|-++.+|..++..++.|+...|+.+..-. .+...-..+.|.+..+|....+.+-.+....|
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p 346 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIP 346 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCC
Confidence 456667778899999999999999999887654321 22223334566677788888888877776654
No 321
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=63.47 E-value=85 Score=25.96 Aligned_cols=97 Identities=16% Similarity=0.355 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhh--ccCchHHHHHHH----HHHhccC--ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH
Q 013663 110 RSTVGTIVSVVVQLG--GIAGWLELLQAL----VTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (438)
Q Consensus 110 r~~~a~~la~i~~~~--~~~~w~~ll~~l----~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (438)
-..++.++..+.... +.-.|..+-+.. ...+..+ ++.+...|+.+|..++...+.... .. .-+.-
T Consensus 31 ~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~-----~V--~~evt 103 (160)
T PF11841_consen 31 GEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQ-----LV--EQEVT 103 (160)
T ss_pred HHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHH-----HH--hccCC
Confidence 355666666666543 445786554444 4444332 578888999999999887665321 00 01224
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccch
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (438)
++.+...++.++++++..|+..+..++...++
T Consensus 104 ~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 104 LESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 67788888889999999999988888776653
No 322
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=62.85 E-value=22 Score=32.81 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=47.7
Q ss_pred HHHHHHHHHhccCChh-hHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 131 ELLQALVTCLDSNDIN-HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~-~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
+++..|++.+++.+++ ....|+.=+..+++..|+... ++.+ -..=..++.++++++++||-.|++++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~-----vl~K--yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA-----VLSK--YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH-----HHHH--hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4556677777776555 445566667777777775311 0000 1122468899999999999999999988765
No 323
>PF14961 BROMI: Broad-minded protein
Probab=62.11 E-value=1.2e+02 Score=33.47 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=56.0
Q ss_pred HHhhhhhh-cCcHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 96 ~~ll~~l~-~~~~~vr~~~a~~la~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+.+++-+. +.+..||..+.+.+..+--.+ ....|+.+...|...+.++|+.....++..........+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 34444454 357899999999998876655 45889999999999999999999999999988887766653
No 324
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=62.09 E-value=9.1 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc
Q 013663 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (438)
Q Consensus 109 vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~ 141 (438)
||+.++.+|+.+. +++.+|.|++.++
T Consensus 1 VR~~Aa~aLg~ig-------d~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIG-------DPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG--------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-------CHHHHHHHHHHhc
Confidence 5777788777664 4778888877664
No 325
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.61 E-value=98 Score=28.61 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCH
Q 013663 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT 194 (438)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 194 (438)
.+..+...+.+.+|.+|..|+.-+..+... +.. .+..+....++.+.+.+++..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~-------~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQ-------SLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc-chh-------hhccchhhhHHHHHHHccCccc
Confidence 345677778888899999888777665544 221 1123456677888888887655
No 326
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=61.25 E-value=1.5e+02 Score=28.19 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCC--------------CHHHHHHH
Q 013663 177 PINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP--------------SAEVRKLV 241 (438)
Q Consensus 177 ~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--------------~~~~~~~a 241 (438)
.+...+..+++++.. .+++|-...+.-|...+....=.....++.+...+++++.|. ..++....
T Consensus 138 ~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~ 217 (356)
T PF03542_consen 138 PISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCV 217 (356)
T ss_pred eHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHH
Confidence 356677888888875 589998888888776655421000111445555555543221 14677788
Q ss_pred HHHHHHHHhhCccccccc-HHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 242 CAAFNLLIEVRPSFLEPH-LRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~-~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+..|..++..+. .|.+. -.+++..+..++.. ...+.|+..+...+-
T Consensus 218 ~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~ 264 (356)
T PF03542_consen 218 FPVLSALISYHS-HFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCY 264 (356)
T ss_pred HHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHH
Confidence 888888886543 33333 34788888887765 345566665555443
No 327
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.35 E-value=54 Score=36.97 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 219 ~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
++.+.+-+.....+.....|..|+..+..+.+.-++..-+++++++|++-..+.|.+++|..++-..+..+-+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~ 1611 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEE 1611 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3445444444455666789999999999999888888889999999999999999999998888775555433
No 328
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.31 E-value=1.5e+02 Score=27.86 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=70.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHH----hHHHHHHHHHHhhC----C-CC--------HHHHHHHHHH
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV----SMDQYLQGLFLLSN----D-PS--------AEVRKLVCAA 244 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~----~~~~ll~~l~~~~~----~-~~--------~~~~~~a~~~ 244 (438)
+..+...++.....+...+++.+.+++.+.+..... .++--++.+..++. . .+ +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 677888999888888899999999999976543322 12111222333221 1 01 2899999999
Q ss_pred HHHHHhhCcccccc-cH--HHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 245 FNLLIEVRPSFLEP-HL--RNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 245 l~~l~~~~~~~~~~-~~--~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
+..+....+..++. .+ ..++..+++.+.....++....++.+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 99998766543332 22 1356667777777777888888877665
No 329
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=60.18 E-value=1.1e+02 Score=26.17 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=26.1
Q ss_pred hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHh
Q 013663 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~ 123 (438)
+....+-..+++...+.-.+||..++.++..+...
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 37 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHS 37 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445556666666777889999999999999843
No 330
>PLN03205 ATR interacting protein; Provisional
Probab=59.86 E-value=1.7e+02 Score=28.16 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhh-ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHh-
Q 013663 111 STVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF- 188 (438)
Q Consensus 111 ~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~- 188 (438)
.+..++...+.+.. +.-....+++.|...+.-++..+...++++|..+.+++-.. +..+..-.+.+.-.++....+.
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~-~~~~~~~~~~NWvsLfElm~QiA 380 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGD-EKRFEASWDANWHSLFELMNQIA 380 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCC-cccccccccccHHHHHHHHHHHH
Confidence 55666666666654 44567889999999998888888899999999998887542 0000000012233344443333
Q ss_pred ccCCCHHHHHHHHHHHHHHHcccc-----hhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCcccccc----
Q 013663 189 FQSPHTSLRKLSLGSVNQFIMLMP-----SALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEP---- 258 (438)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~-----~~~~~~~~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~---- 258 (438)
..+....||..|+.++.-++..-. +.|.. ..++..+.++++- .-..|++.++..|--+. ++|+.+.-
T Consensus 381 v~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLL-NCpklL~iFcSg 457 (652)
T PLN03205 381 SIRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLL-NCPKLYDRFDSL 457 (652)
T ss_pred hccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHH-cCcHHHHHHhcC
Confidence 235677899999998877654322 12211 1344555555532 23467777777655333 23321110
Q ss_pred ---------------------cHHHHHHHHhhhhc-----CCChHHHhHHHHHHHHhhcc-CCChh--------hHHhhH
Q 013663 259 ---------------------HLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFEA-QLPHE--------NLKEFL 303 (438)
Q Consensus 259 ---------------------~~~~li~~~~~~~~-----~~~~~v~~~a~~~~~~~~~~-~~~~~--------~~~~~l 303 (438)
-+..++.-+..++. ..+-+++..++-.+.-++.+ +...+ --..|+
T Consensus 458 ~~e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFL 537 (652)
T PLN03205 458 HEEKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFL 537 (652)
T ss_pred CccccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHH
Confidence 11233333333332 23566778887777666655 11111 114567
Q ss_pred HHHHHHHHhcc
Q 013663 304 PRLVPVLLSNM 314 (438)
Q Consensus 304 ~~l~~~l~~~l 314 (438)
.-++.+|+.-|
T Consensus 538 mLILqvLvSem 548 (652)
T PLN03205 538 MLILHLLVAEI 548 (652)
T ss_pred HHHHHHHHHHh
Confidence 66777776554
No 331
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=59.85 E-value=77 Score=24.31 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHH--HHHHHhhh-----h-cCCChHHHhHHHHHHHHhh
Q 013663 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN--LFEYMLQV-----N-KDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 220 ~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--li~~~~~~-----~-~~~~~~v~~~a~~~~~~~~ 290 (438)
..++..+...+.++++.+...++..+-.+++++++.|..++.. ++..++.. . .+.+..||..+.+++...+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 3566667777777889999999999999999998877665532 22222221 1 2347789988888776543
No 332
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=59.77 E-value=1.9e+02 Score=28.68 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHHH--h------------hhccC----CHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHh
Q 013663 62 GKSVEIRQAAGLLLKNNLR--T------------AYKSM----SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~--~------------~w~~l----~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~ 123 (438)
+.++..|..|...+...+. | .+... ....++.-|-.++.+..+..+.+-.+.-.++|.++..
T Consensus 58 d~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~ 137 (728)
T KOG4535|consen 58 DPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSN 137 (728)
T ss_pred CCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 6788899888887766552 1 11111 1222333333333333566778888889999999887
Q ss_pred hccC-----chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 124 GGIA-----GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 124 ~~~~-----~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
.+-+ -..++...+...+++.|+.++..++..++.++..
T Consensus 138 ~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 138 APYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 5422 2345666777788889999999999999998764
No 333
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=59.41 E-value=18 Score=22.84 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=26.5
Q ss_pred hHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh
Q 013663 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~ 124 (438)
..+++|+.+++.|...+.. |..+..+|+.+.+..
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4679999999999876544 888888888887654
No 334
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=59.38 E-value=1.4e+02 Score=26.99 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=67.3
Q ss_pred HHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 132 LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 132 ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
+.|++-...++ +-+..|-.++.+++.+++.-..+.-+ ++ -..+++|.++..+..++.--|..|.-.+..++..
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~----fL--l~tEiiplcLr~me~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVIS----FL--LQTEIIPLCLRIMEFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHH----HH--HCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHH----HH--HhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 45666443333 23578999999999999855543211 10 1257899999999888888888888887776543
Q ss_pred c---------chhhHHhHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 211 M---------PSALFVSMDQYLQGL-FLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 211 ~---------~~~~~~~~~~ll~~l-~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
- ++.|. .+..++..+ ..+..++++.+-+.+++|-.++.++
T Consensus 170 d~GL~yiC~t~eRf~-av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 170 DVGLNYICQTAERFF-AVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHTSSHHHHH-HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHhcCHHHHH-HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 2 12222 122333322 2345677888888899998888765
No 335
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.61 E-value=1.5e+02 Score=26.89 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC
Q 013663 113 VGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP 192 (438)
Q Consensus 113 ~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~ 192 (438)
+..++..|.....|+.+.+++..+...+.++.+-.|...+.+|..+...+.-. + +...+++..+.+.++.+
T Consensus 170 l~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--~-------~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 170 LSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--S-------PHGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--C-------CcchHHHHHHHHHhCCc
Confidence 34445555555567888999999999999888889999999999998887653 1 24577888888888765
Q ss_pred CHHHHHHHHHHHHHHH
Q 013663 193 HTSLRKLSLGSVNQFI 208 (438)
Q Consensus 193 ~~~vr~~al~~l~~~~ 208 (438)
-. ..|++.+-..+
T Consensus 241 ~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 241 LW---MEALEVLDEIV 253 (262)
T ss_pred cH---HHHHHHHHHHH
Confidence 33 34555554443
No 336
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=57.51 E-value=4.4e+02 Score=32.23 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=69.4
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 258 (438)
......+...+...+..+-..+.++++-+..-....-.+.+..-+..++..+.+...--|..|.-.+..++...|.++-|
T Consensus 92 s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~ 171 (2341)
T KOG0891|consen 92 SRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYP 171 (2341)
T ss_pred HhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHH
Confidence 33334444555555777777777777765543321112222333344444443322333456667778888889999999
Q ss_pred cHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 259 ~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
+++.++.-++....+.+.-++..|...+...
T Consensus 172 ~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~ 202 (2341)
T KOG0891|consen 172 YVNKFFKNIFAALRDPKPAIRLQACSALHAV 202 (2341)
T ss_pred HHHHHHHHHHHhccCCChhhhHHHHHHHHHH
Confidence 9999999999888888888888877655554
No 337
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=56.62 E-value=3.7e+02 Score=31.14 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG--IAGWLELLQALVTC 139 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~--~~~w~~ll~~l~~~ 139 (438)
+.++.+|.+|..+.+..+... +.-.+..|...|+..+.+.+..-...+-.++-.++...+ ...+..++.-++.+
T Consensus 446 S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~ 521 (1426)
T PF14631_consen 446 SKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDY 521 (1426)
T ss_dssp SSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 889999999999988876642 333566777778788766544334566777777876542 23345556666666
Q ss_pred hccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch------
Q 013663 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS------ 213 (438)
Q Consensus 140 l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~------ 213 (438)
+.+-+....+..+.+|..++-.-... . ...-+++.-.+.+.+.+++...+...+=....++..+..
T Consensus 522 l~~Ls~~qiR~lf~il~~La~~~~~~-~-------s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la~~~~~~~ 593 (1426)
T PF14631_consen 522 LDNLSLQQIRKLFDILCTLAFSDSSS-S-------SSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLAAKNSESD 593 (1426)
T ss_dssp GGG--HHHHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT-------
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCccc-c-------hhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHhccCC
Confidence 66655555666677777776432211 0 122355666678899999888876444333333332210
Q ss_pred -----------hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 214 -----------ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 214 -----------~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
.....+..+++.+.... ...|+...-.++-|..++..
T Consensus 594 ~~~~~~~~l~~~~~~q~~~Ll~l~~ss~-~~sp~~~ALfYDELA~li~~ 641 (1426)
T PF14631_consen 594 SSSSERSNLSDEQCKQATSLLELVQSSS-EQSPEALALFYDELANLIQS 641 (1426)
T ss_dssp -----------HHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhc
Confidence 00112223444333333 34566666666666666654
No 338
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=56.49 E-value=45 Score=34.57 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc----------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~ 80 (438)
.++.+++.-+.++++. ++..|...++++.. +-+-+..|+.+|. +...+++.-|+..|||.+-
T Consensus 233 ~~lpe~i~mL~~q~~~-~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~---~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPS-VQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD---HRNDEVQRQACGALRNLVF 304 (717)
T ss_pred cccHHHHHHHhccChh-hhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc---CCcHHHHHHHHHHHHhhhc
Confidence 4566677777788888 99999999988762 1233555777775 7889999999999999984
No 339
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=56.23 E-value=35 Score=25.11 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc
Q 013663 197 RKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 197 r~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
|-+++-+|++++...|-.+-++++.++..|.....++ ..++..+=++|.++-+.+.+
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-QPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcc
Confidence 5578888999998887666668888888888777763 45888888889988877654
No 340
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=56.21 E-value=1.9e+02 Score=27.74 Aligned_cols=137 Identities=10% Similarity=0.110 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHHHHHhh-----ccCchHH-HHHHHHHHhccC--ChhhHhHHHHHHHHHHhccccccccCCCCCCcc-
Q 013663 106 DRHIRSTVGTIVSVVVQLG-----GIAGWLE-LLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAEC- 176 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~-----~~~~w~~-ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~- 176 (438)
+..+..++-.+++.+.-+. .++.... ++...+..+.++ +......++++|.. +.++.. ++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~-------~~~~~ 129 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPK-------IMTSD 129 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCc-------ccchh
Confidence 5666777777777776432 1233333 667777777554 45677777887754 333332 1111
Q ss_pred hhhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 177 PINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 177 ~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
....++..+...-+ =++..+-..++.++..++...|+.+..+....++.++..+-+....+|..|..+...+...
T Consensus 130 ~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~ 205 (372)
T PF12231_consen 130 RVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKC 205 (372)
T ss_pred hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 22333333333222 2567788889999999999888777666665565555544455567888776666655543
No 341
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=55.57 E-value=2e+02 Score=27.65 Aligned_cols=225 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 110 RSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 110 r~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
++.+++.|...+++ +|.--.+.+..-+..+.+.+-.+|..|+.-|-.+|+. +. +..+.+.+.++|
T Consensus 41 k~lasq~ip~~fk~-fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~------------~~rv~d~l~qLL 105 (460)
T KOG2213|consen 41 KRLASQFIPRFFKH-FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA------------LSRVNDVLVQLL 105 (460)
T ss_pred HHHHHHHHHHHHhh-CchhhhHHHHhhhccccccchhhHHHHHhccchhccC--ch------------hhhhHHHHHHHH
Q ss_pred cC------------CCHHHHHHHHHHHHH-HHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 190 QS------------PHTSLRKLSLGSVNQ-FIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 190 ~~------------~~~~vr~~al~~l~~-~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
+. .+..+|..+++.+.. ++...++.+.+.++ .+++.+...+.|-.-+.....+..|..+-......
T Consensus 106 nk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~ 185 (460)
T KOG2213|consen 106 NKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKA 185 (460)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCC
Q ss_pred ccccHHHHHHHH-----hhhhcCCChHHHhHHHHHHHH----hhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccc
Q 013663 256 LEPHLRNLFEYM-----LQVNKDTDDDVALEACEFWHS----YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (438)
Q Consensus 256 ~~~~~~~li~~~-----~~~~~~~~~~v~~~a~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~ 326 (438)
=...+..++... +....-.|.+....-+.++.. +++.....+.+.-+-.+++|.-+..+.
T Consensus 186 ~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~----------- 254 (460)
T KOG2213|consen 186 GEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLT----------- 254 (460)
T ss_pred CHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccch-----------
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHh
Q 013663 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL 398 (438)
Q Consensus 327 ~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 398 (438)
...+-.-..+|..|+...-.+.....+|.|-+.|
T Consensus 255 --------------------------------------e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elL 288 (460)
T KOG2213|consen 255 --------------------------------------EERKLDLLKALAEMSSYTTAQAARQMLPSIVELL 288 (460)
T ss_pred --------------------------------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
No 342
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.34 E-value=2.5e+02 Score=28.82 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
-..+-.+...+.+.++..+..++..|..+.+++-+.+.-. .+.. ... ...+++.+++.= .
T Consensus 209 ~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR-------~lte-------~Ek--~~k~sKev~klr-~--- 268 (704)
T KOG2153|consen 209 LKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIR-------PLTE-------KEK--RTKLSKEVLKLR-E--- 268 (704)
T ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceec-------ccHH-------HHh--cccccHHHHHHH-H---
Confidence 3467777888888888788888888877777765532200 0000 000 112222222111 0
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCC---C---HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHH
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDP---S---AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~---~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~ 283 (438)
....+..+....++.+..+..+. . -.+..-|++|.+.+....|.+ .+...++.+++..+.+....++..++
T Consensus 269 -yE~~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHF--N~~~kiv~l~vr~in~~~~~~s~~~i 345 (704)
T KOG2153|consen 269 -YEQALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHF--NLRQKIVKLVVRLINDPGRPVSSGCI 345 (704)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhc--cHHHHHHHHHHHhhcCCCCchHHHHH
Confidence 01111222223333333333221 1 134557788888888766543 46678999998888888888999999
Q ss_pred HHHHHhhccC
Q 013663 284 EFWHSYFEAQ 293 (438)
Q Consensus 284 ~~~~~~~~~~ 293 (438)
..+.++.+..
T Consensus 346 ~t~k~lf~~D 355 (704)
T KOG2153|consen 346 QTIKTLFEND 355 (704)
T ss_pred HHHHHHhcCC
Confidence 8888887763
No 343
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=54.40 E-value=1.2e+02 Score=25.00 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=59.1
Q ss_pred hhHhHHHHHHHHHHhc--cccccccCCCCCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccchhhHHhH-H
Q 013663 146 NHMEGAMDALSKICED--IPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM-D 220 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~--~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~-~ 220 (438)
.....+|.++..+.++ ++.. ...+.++..+...++.+ +..+...|+..|-+++..-+..+ ..+ +
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd----------~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly-~~V~~ 100 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWD----------TLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLY-QLVEQ 100 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchh----------hccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHH-HHHhc
Confidence 4445566667666664 1221 12355666666666654 57788899999988887544322 222 1
Q ss_pred H-HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 221 Q-YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 221 ~-ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
. -++.+...++.+++++...++..+..+....+
T Consensus 101 evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 101 EVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 1 13444555566778888888888887775544
No 344
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=53.74 E-value=70 Score=33.22 Aligned_cols=73 Identities=15% Similarity=0.342 Sum_probs=56.5
Q ss_pred hHHH-HHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh--HHHHHHHhccCCCHHHHHHHHHHHH
Q 013663 129 WLEL-LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI--FLPRLLQFFQSPHTSLRKLSLGSVN 205 (438)
Q Consensus 129 w~~l-l~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~~~~~~vr~~al~~l~ 205 (438)
|.+. +|..+.++.++++..+-.|..-++.+|..-...- ..+.. =++.++..+.++..+|+..|+.+|.
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik---------~~vrqlggI~kLv~Ll~~~~~evq~~acgaLR 300 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIK---------SRVRQLGGIPKLVALLDHRNDEVQRQACGALR 300 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHH---------HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 7664 8889999999988888888888888886544321 11222 2678999999999999999999999
Q ss_pred HHHcc
Q 013663 206 QFIML 210 (438)
Q Consensus 206 ~~~~~ 210 (438)
+++--
T Consensus 301 NLvf~ 305 (717)
T KOG1048|consen 301 NLVFG 305 (717)
T ss_pred hhhcc
Confidence 98754
No 345
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=53.70 E-value=1.3e+02 Score=24.92 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHhccCChh
Q 013663 70 AAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDIN 146 (438)
Q Consensus 70 ~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~l~~~l~~~~~~ 146 (438)
++..+|.+.++.+ +..+..|.+.+++.+.............+++.+++..+ .+.|..+ ..+++.+..-+.+
T Consensus 37 LG~~IL~~~fk~h-----~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l-~~~ld~l~~lp~~ 110 (158)
T PF14676_consen 37 LGIQILLELFKVH-----EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKL-KELLDYLSFLPGD 110 (158)
T ss_dssp HHHHHHHHHHHH------GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHH-HGGGGGTTTS-HH
T ss_pred HHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHH-HHHHHHHHhCCHH
Confidence 7777777777654 23455555555555432211111234678888887653 2334333 3334444333444
Q ss_pred hHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHH
Q 013663 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (438)
...+-+.++.=+++.-+. .-+.++-.+-+.+-..+...|..|+..+
T Consensus 111 ~a~~ll~Al~PLi~~s~~------------lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 111 VAIGLLRALLPLIKFSPS------------LRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHHHTT-HH------------HHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHH------------HHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 444444444444443322 2366777888888888899999888765
No 346
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=4e+02 Score=30.42 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=107.0
Q ss_pred CCCCCCCHHHHH---HHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC---Cc---HHHHHHHHHhhc-cCCCHHHHHHHHH
Q 013663 4 SVAWQPQEQGFN---EICRLLEQQISPSSTADKSQIWQQLQQYSQF---PD---FNNYLAFILARA-EGKSVEIRQAAGL 73 (438)
Q Consensus 4 ~~~~~~~~~~~~---~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~---p~---~~~~l~~il~~~-~~~~~~~R~~A~~ 73 (438)
+.+..|+|.-+. ++..++..+..-|.. .+..|-+.|.++... +. +.+.+..+...- .+.+..+|...-.
T Consensus 27 ~~~~~~~~~~~~~dsel~~I~kkL~KkD~~-TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~ 105 (1312)
T KOG0803|consen 27 SASSNPDPFVLELDSELDIIVKKLLKRDET-TKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHD 105 (1312)
T ss_pred ccccCCChHHhccCHHHHHHHHHHhccChH-HHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 455566666443 677788888888988 999999999988752 21 122222322210 2788999988877
Q ss_pred HHHHHHHhhhccCCHhhHHHHHHHhhhhhh---cCcHHHHHHHHHHHHHHHHhh-ccCch----HHHHHHHHHH------
Q 013663 74 LLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQLG-GIAGW----LELLQALVTC------ 139 (438)
Q Consensus 74 ~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~---~~~~~vr~~~a~~la~i~~~~-~~~~w----~~ll~~l~~~------ 139 (438)
.+-..+.+.-+++++- +|..+.-.+. +....|..++-..+-....-+ .+.-| +++++.+.+.
T Consensus 106 v~s~l~t~lkk~lsp~----LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~ 181 (1312)
T KOG0803|consen 106 VFSKLLTKLKKKLSPF----LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETP 181 (1312)
T ss_pred HHHHHHHHHHHHhhHH----HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCc
Confidence 7666655433333332 3322222222 223333333222222222110 01111 1222222222
Q ss_pred -------------hccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh--HHHHHHHhccCCCHHHHHHHHHHH
Q 013663 140 -------------LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI--FLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 140 -------------l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~~~~~~vr~~al~~l 204 (438)
+...-..+...++.++..+.......-... +. ...... -...+.+.+++..+.++.+..+++
T Consensus 182 ~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~--~~-~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell 258 (1312)
T KOG0803|consen 182 DSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELH--SL-SEKEKTFLSSEKFWKLLKSKSPSIKVALLELL 258 (1312)
T ss_pred cccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhh--hh-hhhhhhhhhHHHHHHHhcCCCcchhHHHHHHH
Confidence 112223566677777777775554421100 00 000111 234577888899999999999999
Q ss_pred HHHHcccchh
Q 013663 205 NQFIMLMPSA 214 (438)
Q Consensus 205 ~~~~~~~~~~ 214 (438)
..++..++..
T Consensus 259 ~~l~~~i~~~ 268 (1312)
T KOG0803|consen 259 LSLIDDILNR 268 (1312)
T ss_pred HHHHhhhHHh
Confidence 9998877643
No 347
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=52.88 E-value=2.2e+02 Score=31.38 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=79.7
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCCCc--chhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccc--hhhHHhHH
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAE--CPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP--SALFVSMD 220 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~--~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~--~~~~~~~~ 220 (438)
.....++.+|..++...|+.. .+|+ ..+-..++.+...+.. .++++...|++.+.....+.+ ..+...
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdla-----svfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-- 1812 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLA-----SVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-- 1812 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchh-----hhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh--
Confidence 466788999999998888642 1121 1122345666666654 578899999988866544432 111111
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH--HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
..+..++.++. .-|..|..+++.|..+.+. ++..+.-+. .++.+.--.+...++..|-+|.+++..+.-.
T Consensus 1813 ~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1813 NVLTTLLTLLH-SQPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred hHHHHHHHHHh-cChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 13344444443 4577889999998877753 222221111 1222222223456788999999998887544
No 348
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=51.59 E-value=25 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCChhhHhHHHHHHHHHHhccc
Q 013663 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (438)
-++.++..++|..+.+|..|+.+|+.|+....
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 47888889999999999999999999987543
No 349
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=51.51 E-value=1.3e+02 Score=24.61 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcccch-hhHHhHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHHHhhCcccccccHHHHHH
Q 013663 195 SLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSND--------PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (438)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~-~~~~~~~~ll~~l~~~~~~--------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~ 265 (438)
.+-..+.+++..++.-+++ .|.| ++-.+..+... +...-+..-++.+..+.+.....|.||...+++
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRP----lF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~ 111 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRP----LFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLD 111 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHh----HHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888777766653 3444 44334443321 123334456777888888888899999998888
Q ss_pred HHhhhhc
Q 013663 266 YMLQVNK 272 (438)
Q Consensus 266 ~~~~~~~ 272 (438)
-+...++
T Consensus 112 ~~~~~L~ 118 (153)
T PF08146_consen 112 NAVDLLK 118 (153)
T ss_pred HHHHHHH
Confidence 8766654
No 350
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.94 E-value=2.7e+02 Score=27.81 Aligned_cols=154 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHhhcc--CchHH-HHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCC
Q 013663 117 VSVVVQLGGI--AGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH 193 (438)
Q Consensus 117 la~i~~~~~~--~~w~~-ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 193 (438)
+|.++..+|. ..+|. +...|......-++..|..-+.+|--+-..-.- ....++..|+.++..++
T Consensus 3 ~aqv~~~yp~~~a~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i------------~~~~LL~lff~l~~~~d 70 (616)
T KOG2229|consen 3 VAQVCPCYPEVLANFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLI------------VAEDLLELFFPLLRCGD 70 (616)
T ss_pred hhhcccccHHHHHhhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcC------------CHHHHHHHHHHHHhcCc
Q ss_pred HHHHHHHHHHHHHHHcccc--hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhh
Q 013663 194 TSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (438)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~ 271 (438)
...|..+..-+...+..+. ..-.+.=..+-..++.++.++++.-.+.|+..++++-+...=. -..-+..+...+
T Consensus 71 k~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~----d~~tV~i~~~ac 146 (616)
T KOG2229|consen 71 KNLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN----DSKTVNIITTAC 146 (616)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc----cchhHHHHHHHH
Q ss_pred cCCChHHHhHHHHHH
Q 013663 272 KDTDDDVALEACEFW 286 (438)
Q Consensus 272 ~~~~~~v~~~a~~~~ 286 (438)
-+.++.|...++.|+
T Consensus 147 f~~~~ki~vs~l~Ff 161 (616)
T KOG2229|consen 147 FSKVPKILVSGLRFF 161 (616)
T ss_pred hccCcHHHHhhhHHh
No 351
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=50.27 E-value=68 Score=24.80 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=39.8
Q ss_pred HHHHHHhccCC--CHHHHHHHHHHHHHHHcccch---hhHHhHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCccc
Q 013663 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 182 l~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~-~~~~~~a~~~l~~l~~~~~~~ 255 (438)
+..++..+... +.+-...|+++...++..-+. .+..+-..++..+..+-+.-+ ++.-..-.++++.++-..|..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 34455556532 466667899999999887765 566666777777776543211 222233334555566666655
Q ss_pred ccc
Q 013663 256 LEP 258 (438)
Q Consensus 256 ~~~ 258 (438)
..+
T Consensus 85 ~~~ 87 (114)
T PF10193_consen 85 VAP 87 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 352
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=50.00 E-value=1.4e+02 Score=25.41 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQ----YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~----~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
.|++...++|..++.. .|... .-..-...|-+ +.+.|...+.++..+. -.++....-+..+|. .|
T Consensus 4 ~p~~~~~~~L~~i~~~--~p~~~-L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~---w~~~~~~~~~~~ll~-----~W 72 (184)
T PF00613_consen 4 KPNEEERDQLEAIINK--DPLQE-LTEEEKELLWKYRYYLMNNPEALPKLLRSVD---WWNPEEVSEAYQLLL-----QW 72 (184)
T ss_dssp ---HHHHHHHHHHHTS---TTSS-S-HHHHHHHHHTHHHHTTSGGGHHHHHTTST---TTSHHHHHHHHHHHH-----TS
T ss_pred CcCHHHHHHHHHHHhc--CCCcc-CCHHHHHHHHHCCHHhhhCchHHHHHHhhCC---CCchhhHHHHHHHHH-----cC
Confidence 3677777788887764 33322 21111222322 3357876654444222 333433334444443 39
Q ss_pred ccCCHhhHHHHHHHhhhhhhc--CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC
Q 013663 84 KSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (438)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~ 143 (438)
..++++. .+++|.. +++.||..+...+..+. .+..-.++|.|++.++-.
T Consensus 73 ~~~~p~~-------AL~LL~~~f~~~~VR~yAv~~L~~~~----d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 73 PPISPED-------ALELLSPNFPDPFVRQYAVRRLESLS----DEELLFYLPQLVQALRYE 123 (184)
T ss_dssp HCTTHHH-------HHHCTSTT---HHHHHHHHHHHCTS-----HHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHH-------HHHHHHhhccHHHHHHHHHHHHHHcC----chHHHHHHHHHHHHheec
Confidence 9988754 3455654 36899998888886543 334567889999988743
No 353
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=49.38 E-value=1.2e+02 Score=23.24 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
+.+...+.+.+....+..+..++.++..+++........ .....+.+.+...+...++++|....+.+.-|
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKE-------FFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 566777777777777889999999999999987654211 11222355556666677888887766666554
No 354
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=49.17 E-value=35 Score=27.58 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=26.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
.+.+-..+..++.+++.+|+..|++|+..|=
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4566677889999999999999999998763
No 355
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.30 E-value=1.2e+02 Score=23.01 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC---CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF---PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~---p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
.+..+|....+.... ..|...+.++... +.++..++.... +.....|.+.+.++.....+. .++.+...
T Consensus 4 ~i~~~l~ey~~~~d~---~ea~~~l~el~~~~~~~~vv~~~l~~~l---e~~~~~r~~~~~Ll~~L~~~~--~~~~~~~~ 75 (113)
T PF02847_consen 4 KIFSILMEYFSSGDV---DEAVECLKELKLPSQHHEVVKVILECAL---EEKKSYREYYSKLLSHLCKRK--LISKEQFQ 75 (113)
T ss_dssp HHHHHHHHHHHHT-H---HHHHHHHHHTT-GGGHHHHHHHHHHHHH---TSSHHHHHHHHHHHHHHHHTT--SS-HHHHH
T ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHhCCCccHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 345556665554433 6777777776432 334433433333 347889999999998888764 46766666
Q ss_pred HHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
.--..+++.+.+ ..|.....+|..++.....
T Consensus 76 ~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~ 109 (113)
T PF02847_consen 76 EGFEDLLESLEDLELDIPKAPEYLAKFLARLIAD 109 (113)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhhccccchHHHHHHHHHHHHHHHc
Confidence 555566666654 2455666667777766543
No 356
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.73 E-value=57 Score=32.21 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=71.6
Q ss_pred hhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhH
Q 013663 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (438)
Q Consensus 102 l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (438)
+.++++.+---+|..|- .+ ...-++.+-.|...+.+.++.+...||.+|..++++++..|... -.-..+
T Consensus 14 l~~pDWa~NleIcD~IN----~~-~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~------Va~k~f 82 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLIN----ST-EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQ------VASKEF 82 (470)
T ss_pred ccCccHHHHHHHHHHHh----cC-ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHH
Confidence 44556555544444332 11 12335899999999998888999999999999999999875421 123556
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHHHHcccch
Q 013663 182 LPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPS 213 (438)
Q Consensus 182 l~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~ 213 (438)
+..++..... .+..||..++..+-.|-..+++
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 6767777755 4788999999999999877653
No 357
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=47.28 E-value=1.5e+02 Score=23.90 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=53.7
Q ss_pred hhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHH-HHHhhC---CCCHHHHHHHHHHHHHHHhh
Q 013663 179 NIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQG-LFLLSN---DPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 179 ~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~-l~~~~~---~~~~~~~~~a~~~l~~l~~~ 251 (438)
...+..+.+-++ +.++.|...|+..+-.++...+..|...+ ..+++. |..++. +....|+..+++.+......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 556667777776 46888988999999999998876665443 245654 555554 23458899999988888876
Q ss_pred Cc
Q 013663 252 RP 253 (438)
Q Consensus 252 ~~ 253 (438)
+.
T Consensus 117 f~ 118 (141)
T cd03565 117 FR 118 (141)
T ss_pred hC
Confidence 54
No 358
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=46.56 E-value=3.4e+02 Score=27.81 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCCh--------------hhHhHHHHHHHHHHhccccccccCCC
Q 013663 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI--------------NHMEGAMDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~--------------~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (438)
++.++......++.++... +..++..+..|++.+..+.. ......-.+|.+|++.+|..
T Consensus 87 ~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s------ 159 (563)
T PF05327_consen 87 DEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPTS------ 159 (563)
T ss_dssp -HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GGG------
T ss_pred CHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCC------
Confidence 4555555556566565432 34456666666666654321 12234557777888777753
Q ss_pred CCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccc
Q 013663 172 GLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~ 212 (438)
...+.+.+.+.+-.. +......-++-+-.+..+.|
T Consensus 160 ------~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P 196 (563)
T PF05327_consen 160 ------PSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCP 196 (563)
T ss_dssp ------HHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-G
T ss_pred ------HHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchH
Confidence 344555555555432 22233333444444455544
No 359
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=46.11 E-value=1.8e+02 Score=24.56 Aligned_cols=130 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC
Q 013663 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (438)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~ 87 (438)
.+.......+...+....+-+.- ..-.+.-.-......|.. ..+..... +.+.-.|++|.+.+...+.+
T Consensus 67 ~~~~~~~~~~~~~i~~~~~W~~~-D~~~~~~~~~~~~~~~~~-~~~~~w~~---s~~~~~rR~~~~~~~~~~~~------ 135 (197)
T cd06561 67 ELKEEDLERFEPWIEYIDNWDLV-DSLCANLLGKLLYAEPEL-DLLEEWAK---SENEWVRRAAIVLLLRLIKK------ 135 (197)
T ss_pred cCCHHHHHHHHHHHcCCchHHHH-HHHHHHHHHHHHhcCcch-HHHHHHHh---CCcHHHHHHHHHHHHHHHHh------
Q ss_pred HhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHH
Q 013663 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAM 152 (438)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al 152 (438)
......+...+-..+.+++..|+.+.+.+|..+++..+ ...++.+.+.-.+........|.
T Consensus 136 ~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~----~~v~~~l~~~~~~~~~~t~r~a~ 196 (197)
T cd06561 136 ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP----ERVIAFLEKNGLSMPRLTLRYAI 196 (197)
T ss_pred cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH----HHHHHHHHHHHHhCChHHHHHHc
No 360
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=46.09 E-value=3.1e+02 Score=27.12 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHH-HhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-Cc---hHHHHHHHH
Q 013663 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-ELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AG---WLELLQALV 137 (438)
Q Consensus 63 ~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~-~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~---w~~ll~~l~ 137 (438)
.-...|-.|+..|...+.+ | +.+....+-+ .++.+|.++...-|..+|-++...++.... .. -+.+.+.|.
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~-~---~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSY-W---PESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHHh-c---ccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 3366788888888766554 4 5555555655 588888888888899999999999987621 11 246777777
Q ss_pred HHhccC
Q 013663 138 TCLDSN 143 (438)
Q Consensus 138 ~~l~~~ 143 (438)
..+.++
T Consensus 175 ~~L~~~ 180 (441)
T PF12054_consen 175 EILENP 180 (441)
T ss_pred HHHcCC
Confidence 777744
No 361
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=45.01 E-value=3.2e+02 Score=26.98 Aligned_cols=134 Identities=16% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHhhcCCCCH-HHHHHHHHHHHHhhc--CCcHH-----HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh
Q 013663 19 RLLEQQISPSST-ADKSQIWQQLQQYSQ--FPDFN-----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (438)
Q Consensus 19 ~~l~~~~s~d~~-~~r~~A~~~L~~~~~--~p~~~-----~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~ 90 (438)
-+|.-+++|+.+ .+|-+|..-|++... +-+.+ ..++.+-. ...+++.....+-+|.+.+++ +.+.
T Consensus 184 ~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK--~~e~~e~aR~~~~il~~mFKH-----Seet 256 (832)
T KOG3678|consen 184 LLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK--EREPVELARSVAGILEHMFKH-----SEET 256 (832)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh--hcCcHHHHHHHHHHHHHHhhh-----hHHH
Confidence 345556678765 159999999998763 22221 11222222 245556656667677776654 3343
Q ss_pred HH-HHHHHhhh----hhhcCcHHHHHHHHHHHHHHHHhhccCchHHH-----HHHHHHHhccCChhhHhHHHHHHHHHH
Q 013663 91 QQ-YIKSELLP----CLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKIC 159 (438)
Q Consensus 91 ~~-~i~~~ll~----~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~l-----l~~l~~~l~~~~~~~r~~al~~l~~l~ 159 (438)
.. .+-...+. ...-.++.+-+-.|.++++++-+.+...-..+ -+.|+-...+.+...|..|+.+...++
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 32 22223333 33456788888889999999876421110111 111222223345666666665554443
No 362
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=44.75 E-value=1.2e+02 Score=31.41 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred HHHHHHhhhhh----hcCcHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHH---------hc--cCChhhHhHHHH
Q 013663 92 QYIKSELLPCL----GAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTC---------LD--SNDINHMEGAMD 153 (438)
Q Consensus 92 ~~i~~~ll~~l----~~~~~~vr~~~a~~la~i~~~~~~---~~w~~ll~~l~~~---------l~--~~~~~~r~~al~ 153 (438)
..++..+++.+ .+.+..+|-.++..+|+|++..+- ..+=+++....++ +. ..++.+-.+++.
T Consensus 241 h~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~ 320 (993)
T COG5234 241 HIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAIL 320 (993)
T ss_pred hHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence 34445555555 456889999999999999987632 2222333222222 11 113344444444
Q ss_pred HHHHHHhccccccccCCCCCCcchhh-hHHHHHHHhccC--------CCHHHHHHHHHHHHHHHcccchhhHHhHHH-HH
Q 013663 154 ALSKICEDIPQVLDSDVPGLAECPIN-IFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YL 223 (438)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~~~~~~-~il~~l~~~l~~--------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-ll 223 (438)
.++ +....+.-+ .+ -+.+.+.++++= ....+|.+++-.+.++....++...+.++. ++
T Consensus 321 ~~a-la~~~~id~-----------~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~ 388 (993)
T COG5234 321 FFA-LAGAGLIDY-----------SDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLI 388 (993)
T ss_pred HHH-Hhhccccch-----------hhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHH
Confidence 443 333322211 11 144555555542 234577777766666555544444444443 33
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHHHhh
Q 013663 224 QGLFL-LSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 224 ~~l~~-~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
..+.+ .+.|++-.+|+.|..++.+++.+
T Consensus 389 hll~~~alFDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 389 HLLLQTALFDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred HHHHhhhhcCchhhhhhHHHHHHHHHhcc
Confidence 44444 67788889999999998888866
No 363
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=44.04 E-value=3.7e+02 Score=27.48 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHhhhch-----hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 367 LRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
+|-+..+.++.++..+-. ...|.+.......+.+.+ |-.++-|+-+||..|++++
T Consensus 496 ~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~---Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 496 VKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRH---WLLHQHALEAFGQFAERTS 555 (559)
T ss_pred chHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCc---HHHHHHHHHHHHHHhccCC
Confidence 677888899988877622 467777777888888888 9999999999999999876
No 364
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=43.33 E-value=1.5e+02 Score=22.88 Aligned_cols=74 Identities=11% Similarity=0.137 Sum_probs=49.3
Q ss_pred chhhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 176 CPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 176 ~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
.++..++|.+..++. ...++.|.++.-.++.+....+=. .+.++.++..+......... .+.++-++..+....
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 357889999999999 778899999998888877665410 12334455555443332222 467888888787544
No 365
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=42.88 E-value=40 Score=18.50 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~ 142 (438)
.||+.++.+|+.+.. ++.++.|.+.+.+
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 578899999998732 5667777776654
No 366
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=42.86 E-value=80 Score=22.19 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhhh-chhhHH--hHHHHHHHHhcc-CCCCcchhhHHHHHHHHHHhhc
Q 013663 368 RKCSAAALDVLSNVF-GDEILP--TLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~--~l~~~l~~~l~~-~~~~~w~~r~aal~~l~~l~~~ 422 (438)
.++|.-+++.++..- |-.+++ .+++.+.++... +. |..|-.+++++|.++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---LSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---cchHHHHHHHHHHHhCC
Confidence 467888888888774 446665 477777766554 55 99999999999999874
No 367
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=42.52 E-value=4e+02 Score=27.47 Aligned_cols=177 Identities=15% Similarity=0.170 Sum_probs=87.3
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHccc-chhhHHhHHHHHHHHHHhh---CCCC---H-HHHHHHHHHHHHHHhh
Q 013663 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLS---NDPS---A-EVRKLVCAAFNLLIEV 251 (438)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~ll~~l~~~~---~~~~---~-~~~~~a~~~l~~l~~~ 251 (438)
.++..++..=..++..+|..|+-|+..++... +..+.+.+..+.-+...-. .... . -.+..+.+.++.=...
T Consensus 282 ~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~ 361 (661)
T KOG2256|consen 282 KLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQV 361 (661)
T ss_pred HHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHH
Confidence 33333333334568889999999998766543 3333443333332222211 1111 1 2233333333222222
Q ss_pred CcccccccHHHHHHHHhhhhcCCC-hHH-------HhHHHHHHHHhhc-cCCChhhHHhhHHHHHHHHHhccCcChhhhh
Q 013663 252 RPSFLEPHLRNLFEYMLQVNKDTD-DDV-------ALEACEFWHSYFE-AQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (438)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~~~~~~-~~v-------~~~a~~~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 322 (438)
+|..---|+.++.-.+=.++.... +++ -..++.+|..+.. .......+.|.+-.++.+++..+...+
T Consensus 362 ~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLip---- 437 (661)
T KOG2256|consen 362 SYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIP---- 437 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcC----
Confidence 232222233443333333332111 111 2467788888765 222223455555555555554433211
Q ss_pred hccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhHHhHHHHHHHHh
Q 013663 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQAKL 398 (438)
Q Consensus 323 ~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l 398 (438)
+ ...+.+|.-+.+.|-.++...|- .+.|.+++.+....
T Consensus 438 ---------------------------T-----------~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~~~ 477 (661)
T KOG2256|consen 438 ---------------------------T-----------PQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKSVT 477 (661)
T ss_pred ---------------------------c-----------ccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHHhh
Confidence 0 11367789999999999988886 55666666665554
No 368
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=42.24 E-value=2.6e+02 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHhhCCCC--HHHHHHHHHHHHHHHhhCcc
Q 013663 225 GLFLLSNDPS--AEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 225 ~l~~~~~~~~--~~~~~~a~~~l~~l~~~~~~ 254 (438)
.+..++.+++ .-+|..+++++..++...+.
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444555554 67899999999999987664
No 369
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=40.62 E-value=2.4e+02 Score=25.42 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcccchh---hHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhh
Q 013663 196 LRKLSLGSVNQFIMLMPSA---LFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQV 270 (438)
Q Consensus 196 vr~~al~~l~~~~~~~~~~---~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~ 270 (438)
+...|++.+..++...|.. |.. ..-++.+..++. ...+.+...++.++..+.-..|...+.+-. .=+..+...
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r--~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHR--EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhh--hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 4556888888888777642 221 133455555553 345788889999988877666654432211 112233344
Q ss_pred hcC--CChHHHhHHHHHHHHhhc
Q 013663 271 NKD--TDDDVALEACEFWHSYFE 291 (438)
Q Consensus 271 ~~~--~~~~v~~~a~~~~~~~~~ 291 (438)
+++ .+.++|..++||+.-+..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 443 478999999999887543
No 370
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.43 E-value=4.7e+02 Score=27.69 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=53.8
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
..++..|-.+..++-..|+..+++++..++..-|+.-. .++..+.+-+.|++..+...|--.|..+...+|.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 44555666666788899999999999999988875432 4555666667888877777777777777777764
No 371
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.41 E-value=2.8e+02 Score=24.97 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHhccCC--CHHHHHHHHHHHHHHHcccc---hhhHHhHHHHHH
Q 013663 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP---SALFVSMDQYLQ 224 (438)
Q Consensus 182 l~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~---~~~~~~~~~ll~ 224 (438)
+..+...+.++ +..+|.+|++++..++..-+ +....++..+++
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~ 160 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLN 160 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34566677776 56699999999999887655 334444444443
No 372
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=39.83 E-value=2.1e+02 Score=23.41 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcC-----cHHHHHHHHHHHHHHHHhhccCchHHH-----HH
Q 013663 65 VEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-----DRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQ 134 (438)
Q Consensus 65 ~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~-----~~~vr~~~a~~la~i~~~~~~~~w~~l-----l~ 134 (438)
+..+..........+-..|++-+.+.++.+....++-+.+. ...+-.+.-.++..+.+.-......++ =|
T Consensus 43 ~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~P 122 (152)
T PF12422_consen 43 PQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEP 122 (152)
T ss_pred ccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 45555455555566667798877777778877777665432 334444445556655544322223332 36
Q ss_pred HHHHHhccCChhhHhHHHHHHHHH
Q 013663 135 ALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 135 ~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
.|...++..++.+|..|..++...
T Consensus 123 iL~r~L~~~n~~Vr~na~~l~~~a 146 (152)
T PF12422_consen 123 ILWRALQAANAKVRSNAAALFLDA 146 (152)
T ss_pred HHHHHHcCCCcchhccHHHHHHHH
Confidence 788888988999999888877543
No 373
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=39.76 E-value=80 Score=23.26 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
.|-.++-.|+.++..+|..+.++++.++..+.....+ ...|+..+=..+..+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEF 56 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 3556778899999999999999999998887776664 344444444444444
No 374
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=39.49 E-value=2.2e+02 Score=24.98 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHcccchh-hHHhHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCcc--ccccc
Q 013663 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPS--FLEPH 259 (438)
Q Consensus 184 ~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~-~~~~~~a~~~l~~l~~~~~~--~~~~~ 259 (438)
.|.+.|.+++..+|..|++.+..++..-... -..-+..+-.+|+-.+-..| +.+....++.+..++...+. ....+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Q ss_pred HHHHHHHHhh
Q 013663 260 LRNLFEYMLQ 269 (438)
Q Consensus 260 ~~~li~~~~~ 269 (438)
+..+...+..
T Consensus 84 ~~~f~~tm~r 93 (217)
T PF05997_consen 84 LKAFWETMRR 93 (217)
T ss_pred HHHHHHHHHH
No 375
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=39.47 E-value=2.1e+02 Score=23.41 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHhcc--------CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDS--------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 112 ~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~--------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
.+..++..++-......+..++-.+.++... +....+..-+..+..+.+.+-..+ .++...++.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf--------~~Y~~~ll~ 111 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLF--------TPYFSYLLD 111 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 3444444555555566778888888888754 122333333444555555444332 245566666
Q ss_pred HHHHhccCC------C----HHHHHHHHHHHHHHHcc
Q 013663 184 RLLQFFQSP------H----TSLRKLSLGSVNQFIML 210 (438)
Q Consensus 184 ~l~~~l~~~------~----~~vr~~al~~l~~~~~~ 210 (438)
.....|+.. + ..++..++.+|..+..+
T Consensus 112 ~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 112 NAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 655555432 2 56778888888877654
No 376
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=39.44 E-value=73 Score=26.48 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhcc-----CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc
Q 013663 113 VGTIVSVVVQLGGI-----AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 113 ~a~~la~i~~~~~~-----~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 166 (438)
++.++..+....-+ +....++|.+...+.+..+.+...|+.++..+.+.+.+.+
T Consensus 46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666532222 4456899999999999999999999999999988777643
No 377
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=38.16 E-value=2.7e+02 Score=24.16 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcC-CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHH
Q 013663 32 DKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (438)
Q Consensus 32 ~r~~A~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr 110 (438)
.|+-|...+...... .+....+..-|-+ +.--+.|.+|..+|..... .++++....+...+ .. -.+..+.
T Consensus 28 ~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~~~----~~~~~~~~~~~~~l-~~--~~~Wd~v 98 (208)
T cd07064 28 RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKYKK----FLTPEDLPLLEELI-TT--KSWWDTV 98 (208)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHH-cC--CchHHHH
Confidence 667676666666552 3444455555553 4446888888887776433 35666554444322 21 1344444
Q ss_pred HHHHH-HHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 111 STVGT-IVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 111 ~~~a~-~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
-.+|. +++.+... -+++.+.+.....+++.=.|+.|+.+.....+. .....++..+...+
T Consensus 99 D~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~--------------~~~~~l~~~~~~~~ 159 (208)
T cd07064 99 DSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK--------------TDTDLLFEIILANL 159 (208)
T ss_pred HHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhC
Confidence 44443 33443332 245678888888888877777776654333221 12455666777888
Q ss_pred cCCCHHHHHHHHHHHHHHHcccchhhHH
Q 013663 190 QSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (438)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (438)
.|++.-|+++.--+|..+...-|+....
T Consensus 160 ~d~e~fI~KAiGW~LRe~~k~d~~~V~~ 187 (208)
T cd07064 160 GSKEFFIRKAIGWALREYSKTNPDWVRD 187 (208)
T ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 8888889998888888877766544333
No 378
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=38.05 E-value=4.8e+02 Score=27.75 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=83.3
Q ss_pred HHHHhhhhhhc-----CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 94 IKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 94 i~~~ll~~l~~-----~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
+.-.+.++|.. .++.+|.....++..+........+.+++|-++..+-++++..|.=|...+..+-..-......
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~ 157 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDE 157 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchh
Confidence 44455566654 3566777777788777655433333788999999888889999999999888765431111000
Q ss_pred CCCCCCc-chhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccch-hhHHhHHH-----HHHHHHHhhCCCCHHHHH
Q 013663 169 DVPGLAE-CPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS-ALFVSMDQ-----YLQGLFLLSNDPSAEVRK 239 (438)
Q Consensus 169 ~~~~~~~-~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~-~~~~~~~~-----ll~~l~~~~~~~~~~~~~ 239 (438)
+ ++ ...+.+...+... +.. ++..-..-=+.+..++..+++ .+..++.. ++..+++-+.++..+...
T Consensus 158 ~----~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~ 232 (727)
T PF12726_consen 158 E----FDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLP 232 (727)
T ss_pred h----hhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHH
Confidence 0 11 1233344444444 221 222222222344444555543 22223322 445555545444233445
Q ss_pred HHHHHHHHHHhhCcc
Q 013663 240 LVCAAFNLLIEVRPS 254 (438)
Q Consensus 240 ~a~~~l~~l~~~~~~ 254 (438)
..++++..+.+..+.
T Consensus 233 ~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 233 ILLRCLSILLEKLGS 247 (727)
T ss_pred HHHHHHHHHHHhCHH
Confidence 666777777766553
No 379
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=37.45 E-value=1.4e+02 Score=28.46 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=57.8
Q ss_pred CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-CCCHHHHHHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVN 205 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~ 205 (438)
+.=.+.+..+...+...++++...|+.++..++..++..++.+ -....+...|..++. .....|+..--..+.
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E------VsSr~F~~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE------VSSRDFTTELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH------HhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 4446888999999999999999999999999999999876532 123456666777776 456777766555566
Q ss_pred HHHcc
Q 013663 206 QFIML 210 (438)
Q Consensus 206 ~~~~~ 210 (438)
.|.+.
T Consensus 115 eWsee 119 (462)
T KOG2199|consen 115 EWSEE 119 (462)
T ss_pred HHHHH
Confidence 66653
No 380
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.23 E-value=3.8e+02 Score=26.67 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=55.3
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhC
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~--~~~~~~~~a~~~l~~l~~~~ 252 (438)
..+.+..|.+-+++.++.+...||..|-.|++.+...|...+ ..+++-+...... .+.+||..++..+-.....+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHc
Confidence 457778888889888889999999988889988877776444 3566666665543 45688888888776665544
No 381
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.17 E-value=2.6e+02 Score=24.70 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=46.1
Q ss_pred chhhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 176 CPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
.+++.++-.++..... +...+|..++..++++++.-+......+ ..+++.++.++..+++--+.-+.-.+..+.
T Consensus 140 AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 140 AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3445554445544433 3567999999999999987665554443 357777777776655544555555555544
No 382
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=36.71 E-value=4.8e+02 Score=26.72 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=45.7
Q ss_pred hhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCC--------------CHHHHHHHH
Q 013663 178 INIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP--------------SAEVRKLVC 242 (438)
Q Consensus 178 ~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--------------~~~~~~~a~ 242 (438)
...++..+++.-- .-++.++.+-++.+..++...+..+. ..+..+.+.+..+ ...+...+-
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~----~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH 146 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLS----PVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH 146 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHH----HHHHHHHHGGGS-HHHHHH---------------HH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH
Confidence 4556666655533 34666666666667776665543332 3333333222110 112334455
Q ss_pred HHHHHHHhhCcccccccHHHHHHHHhhhhcC--CChHHHhHHHHHHHHhhcc
Q 013663 243 AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~ 292 (438)
.+|..+++..|... ..+.+.+.+..-. ........-+..+..+.+.
T Consensus 147 ~~L~~Il~lvP~s~----~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y 194 (563)
T PF05327_consen 147 DALQKILRLVPTSP----SFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEY 194 (563)
T ss_dssp HHHHHHHHH-GGGH----HHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCH----HHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcc
Confidence 66666666655432 3455555554432 2233333334455555554
No 383
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=36.70 E-value=2.5e+02 Score=23.41 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC
Q 013663 8 QPQEQGFNEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (438)
Q Consensus 8 ~~~~~~~~~l~~~l~~~-~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l 86 (438)
.|++...++|..++..- ...=++..++---..=..+.+.|...+.++.-.. =.++....-+..+|+ .|..+
T Consensus 5 ~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~---W~~~~e~~e~~~lL~-----~W~~i 76 (166)
T cd00870 5 KPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVN---WSDEQEVKQALELMP-----KWAKI 76 (166)
T ss_pred CcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCC---CCCHHHHHHHHHHHh-----cCCCC
Confidence 57777777777777652 1111120222222221223356776543333221 223333333443443 49888
Q ss_pred CHhhHHHHHHHhhhhhhc--CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC
Q 013663 87 SPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (438)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~ 143 (438)
+++.. +++|+. ++..||..|..++..+. .+..-..+|.|++.++-.
T Consensus 77 ~~~~a-------LeLL~~~f~~~~VR~yAV~~L~~~s----d~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 77 DIEDA-------LELLSPYFTNPVVRKYAVSRLKLAS----DEELLLYLLQLVQALKYE 124 (166)
T ss_pred CHHHH-------HHHcCccCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhc
Confidence 77533 445553 47899999888888643 345677888888888743
No 384
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.30 E-value=1.4e+02 Score=30.84 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHH-HHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc
Q 013663 64 SVEIRQAAGLLLKNN-LRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (438)
Q Consensus 64 ~~~~R~~A~~~Lk~~-i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~ 142 (438)
+..+-.+..-+.|-. +.++|. +..||..+.....-.+..|+.-+-.+|...+.....+.+..++|.+...+.+
T Consensus 652 de~lstlqSRl~kLqiVR~~We------r~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS 725 (825)
T KOG0267|consen 652 NEFLSTLQSRLTKLQIVRHFWE------RSDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGS 725 (825)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh------hhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcc
Confidence 343434444444433 455674 3456666655555566677766677777777666678889999999999998
Q ss_pred CChhhHhHHHHHHHHHHhcccccc
Q 013663 143 NDINHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 143 ~~~~~r~~al~~l~~l~~~~~~~~ 166 (438)
.....+...+.+|..++..++..+
T Consensus 726 ~~e~~v~vsld~Llklv~~fgt~I 749 (825)
T KOG0267|consen 726 KTERPVNVSLDMLLKLVAVFGTVI 749 (825)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhh
Confidence 877888888888888887776643
No 385
>PF14961 BROMI: Broad-minded protein
Probab=35.61 E-value=6.9e+02 Score=28.15 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=78.6
Q ss_pred HHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 131 ELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 131 ~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
+=+..+.+.+..+ ...+|..|+..|. ..-+.-+-+ ....+.+-..+..+|.|++..+...+++.....+.
T Consensus 161 e~lq~i~d~ld~~~P~evR~eAlq~Lc---~~p~SDVls------~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 161 EQLQLIADKLDPGQPKEVRLEALQILC---SAPPSDVLS------CESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHh---cCChhhccc------cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 4445566666543 3478888877764 333322111 13577788889999999999999999999998887
Q ss_pred ccchhhH-HhHHHHHHHHHHh--------------hC--CCCHHHHHHHHHHHHHHHhhCcc----cccccHHHHHHHHh
Q 013663 210 LMPSALF-VSMDQYLQGLFLL--------------SN--DPSAEVRKLVCAAFNLLIEVRPS----FLEPHLRNLFEYML 268 (438)
Q Consensus 210 ~~~~~~~-~~~~~ll~~l~~~--------------~~--~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~li~~~~ 268 (438)
.-|-.+. .....++..+... ++ .++..-....++.+.++-+..|+ +-.++++.+++-++
T Consensus 232 sSpl~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTL 311 (1296)
T PF14961_consen 232 SSPLNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTL 311 (1296)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHH
Confidence 7652221 1111222222111 11 11222233456677777666665 44567788888877
Q ss_pred hhhc
Q 013663 269 QVNK 272 (438)
Q Consensus 269 ~~~~ 272 (438)
..+.
T Consensus 312 sLLs 315 (1296)
T PF14961_consen 312 SLLS 315 (1296)
T ss_pred HHhc
Confidence 7654
No 386
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.57 E-value=3.9e+02 Score=25.28 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=82.8
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH-HHHHHhhhhhhc-CcHHHH---HHHHHHHHHHHHhh
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-YIKSELLPCLGA-ADRHIR---STVGTIVSVVVQLG 124 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~-~i~~~ll~~l~~-~~~~vr---~~~a~~la~i~~~~ 124 (438)
...|...+.. ..+|++--.+...|+..-.+. .+..++.+ .-.+.+++++.+ ....+| +..+..+..++-.+
T Consensus 243 l~~L~Eal~A--~~dp~~L~~l~~tl~~lAVr~--E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D 318 (461)
T KOG4199|consen 243 LTALTEALQA--GIDPDSLVSLSTTLKALAVRD--EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD 318 (461)
T ss_pred HHHHHHHHHc--cCCccHHHHHHHHHHHHHHHH--HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC
Confidence 3445555654 667777777777777664432 12222211 223567888876 344455 44455555555443
Q ss_pred c-------cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-C-CHH
Q 013663 125 G-------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-P-HTS 195 (438)
Q Consensus 125 ~-------~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~-~~~ 195 (438)
. .+.-+.++..+.+. +.+|.+...++-++..+|-..|+.... . .-...-...++.|.- | ...
T Consensus 319 svKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa~----~---ie~G~a~~avqAmkahP~~a~ 389 (461)
T KOG4199|consen 319 SVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDHSAK----A---IEAGAADLAVQAMKAHPVAAQ 389 (461)
T ss_pred chHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHHH----H---HhcchHHHHHHHHHhCcHHHH
Confidence 2 12233333333333 357889999999999999888863210 0 001122344555543 3 456
Q ss_pred HHHHHHHHHHHHHcc
Q 013663 196 LRKLSLGSVNQFIML 210 (438)
Q Consensus 196 vr~~al~~l~~~~~~ 210 (438)
|+..|+..+.+++..
T Consensus 390 vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 390 VQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888887654
No 387
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=35.36 E-value=1.4e+02 Score=29.85 Aligned_cols=110 Identities=9% Similarity=0.007 Sum_probs=57.6
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhH-HhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc--c
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--S 254 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~--~ 254 (438)
..+...+++.+.+|+..+...+...+.+++--.+. +. ..+ ..++..+.+.+...|..++....+.+-.++-.+. .
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN-LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccc-hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 44666777777776666665555555544332211 11 111 3566777666655566677777777766665443 2
Q ss_pred cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 255 ~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
.|.+...-=+..++..+.|+...|..+++..+..+
T Consensus 509 kf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNf 543 (743)
T COG5369 509 KFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNF 543 (743)
T ss_pred hhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhc
Confidence 34333332333444444555555555555544443
No 388
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=35.31 E-value=4.5e+02 Score=25.97 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCCh--hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (438)
.|-+-.|+.+....+. .+-+..|+.++++++- .+|..+...|.++...-.-. .....-+..+
T Consensus 163 aV~~evAq~LCD~iR~------~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d----------~va~~~~~~I 226 (832)
T KOG3678|consen 163 AVGREVAQGLCDAIRL------DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRD----------RVARIGLGVI 226 (832)
T ss_pred hhhHHHHHhhhhHhhc------cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhh----------HHhhccchhh
Confidence 4444444444444433 2456677777877653 45777777776654321110 0111112233
Q ss_pred HHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc-ccH-H
Q 013663 186 LQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-PHL-R 261 (438)
Q Consensus 186 ~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~-~ 261 (438)
+..... ..++.....+..+..++.+-.+.....+. ..+..++-.+.-.+|.+.+.+.-+|...+-....... ..+ .
T Consensus 227 l~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK 306 (832)
T KOG3678|consen 227 LNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK 306 (832)
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh
Confidence 333322 34556666777777776654322111111 2233343344445677877777777766543222111 111 1
Q ss_pred HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 262 ~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+-++++-.....++-.|..|+-....++..
T Consensus 307 r~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 307 RAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 3444554444445777888888777776654
No 389
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=35.03 E-value=5.3e+02 Score=26.70 Aligned_cols=266 Identities=19% Similarity=0.267 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 128 ~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
.+|+++....+.+. +.++....+.+..+...++-+|-.+ -+...++..+..-+++ .+..|.++++||..
T Consensus 189 EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~y---------IfeTnIieLv~~~f~s-~pd~r~~tl~CLtE 258 (1053)
T COG5101 189 EFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDY---------IFETNIIELVLEHFNS-MPDTRVATLSCLTE 258 (1053)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhH---------HHHHHHHHHHHHHhcc-CCchhHHHHHHHHH
Confidence 44555555555443 3467777888888888888877531 1235566666655543 34677889999998
Q ss_pred HHccc--chh-------hHHhHHHHHHHHH-----------HhhC--CCCH-HHHHHHHHHHHHHHhhCcccccc-----
Q 013663 207 FIMLM--PSA-------LFVSMDQYLQGLF-----------LLSN--DPSA-EVRKLVCAAFNLLIEVRPSFLEP----- 258 (438)
Q Consensus 207 ~~~~~--~~~-------~~~~~~~ll~~l~-----------~~~~--~~~~-~~~~~a~~~l~~l~~~~~~~~~~----- 258 (438)
++..- |.. +.-+++-++.... ..-. +.++ ..-......++.+.+.+-..+..
T Consensus 259 i~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e 338 (1053)
T COG5101 259 IVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAE 338 (1053)
T ss_pred HHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 87653 211 1111111111000 0001 1112 22233344455555444333221
Q ss_pred cHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc--------C-----C-------------Ch---------h-hHHhh
Q 013663 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA--------Q-----L-------------PH---------E-NLKEF 302 (438)
Q Consensus 259 ~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~--------~-----~-------------~~---------~-~~~~~ 302 (438)
.+..-..++++..+-.+.++-..|+++|..+.-. + . .+ + .....
T Consensus 339 ~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~i 418 (1053)
T COG5101 339 NLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGI 418 (1053)
T ss_pred HHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHH
Confidence 1112223445555556788999999999985321 0 0 00 1 11345
Q ss_pred HHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhh
Q 013663 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (438)
Q Consensus 303 l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~ 382 (438)
+.++.-+++..|..++ ++---++|+ .+-+| +. -.|.| .-..-+....+|-.++.-.
T Consensus 419 lsqLrlvlienMvrPE-EVliVende-------gEivR------ef-----vketD-----tI~lYksmRevLvyLthL~ 474 (1053)
T COG5101 419 LSQLRLVLIENMVRPE-EVLIVENDE-------GEIVR------EF-----VKETD-----TIELYKSMREVLVYLTHLI 474 (1053)
T ss_pred HHHHHHHHHHcCCCcc-eEEEEECCC-------cHHHH------HH-----hcccc-----HhHHHHHHhhHHHHHhhhh
Confidence 5666667777776443 221111000 00010 00 00011 1233344555665555444
Q ss_pred chhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhh
Q 013663 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (438)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~ 428 (438)
-...-..++..+-..+.+.+ -+|+.--.-..++|+|+...++...
T Consensus 475 v~Dte~~mi~Klarq~dg~E-Wsw~nlNtLcWAIGSISGamsE~~E 519 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKE-WSWNNLNTLCWAIGSISGAMSEVNE 519 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCc-cchhhHhHHHHHHhcccchhhhHHH
Confidence 44444445555555554442 3378888889999999988776543
No 390
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=34.98 E-value=1.6e+02 Score=24.30 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCHhhHHHHHHHhhhhh-hcCcHHHHHHHHHHHHHHHHhhccC----chHHHHHHHHHHhcc
Q 013663 86 MSPSNQQYIKSELLPCL-GAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDS 142 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l-~~~~~~vr~~~a~~la~i~~~~~~~----~w~~ll~~l~~~l~~ 142 (438)
+..+..+.+|+.++..| .+..|+|+-++-..++-|++..+.. ....++..+...++.
T Consensus 69 i~~~nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~kn~~~v~s~lid~I~~kiSe 130 (180)
T PHA02855 69 VTEENINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGYKNNNIVMSDLINEIANKISE 130 (180)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhh
Confidence 34556678999999998 5789999999999999999875432 234455555555443
No 391
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=34.26 E-value=93 Score=31.70 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcccchhhHHhHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCC
Q 013663 198 KLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD 275 (438)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 275 (438)
...+..+..+++.+|.-+...++ .+++.|+..+-+.|+.++..|..+|..++...| .-...+..+..++++ ..+..
T Consensus 446 ~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~~~~vi~~Fa~Fif~-~~d~~ 523 (552)
T PF14222_consen 446 KPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-NRQQVITGFARFIFR-FDDKY 523 (552)
T ss_pred cchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHee-CcccC
Q ss_pred hHH----------HhHHHHHHHHhhc
Q 013663 276 DDV----------ALEACEFWHSYFE 291 (438)
Q Consensus 276 ~~v----------~~~a~~~~~~~~~ 291 (438)
... -..++.+|..+.+
T Consensus 524 ~~~~~~~~l~~~~~~~~L~lyveLL~ 549 (552)
T PF14222_consen 524 PSMYDGGYLGSGEIESLLKLYVELLE 549 (552)
T ss_pred ccchhhhccchHHHHHHHHHHHHHHH
No 392
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.01 E-value=2.2e+02 Score=29.48 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc-------h---hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-------S---ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-------~---~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
.+..=+..+++.++++++++...|+..+...++... + .+.|+.. .+..++..+. +++.|+.++..+.
T Consensus 45 ~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~-~Lk~i~~~~~--~~n~Kk~laDIlS 121 (878)
T KOG2005|consen 45 QLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYG-VLKEIYESMA--DSNLKKWLADILS 121 (878)
T ss_pred HhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchh-HHHHHHHhcc--CchhHhHHHHHHH
Confidence 345567889999999999999999999998876532 2 1222222 2333443333 3567888888888
Q ss_pred HHHhh
Q 013663 247 LLIEV 251 (438)
Q Consensus 247 ~l~~~ 251 (438)
.++-.
T Consensus 122 vLamt 126 (878)
T KOG2005|consen 122 VLAMT 126 (878)
T ss_pred HHhee
Confidence 77754
No 393
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.89 E-value=2.3e+02 Score=21.46 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
.+..++....+++.. ..|...+.++.. .++++..++.... +.....|.+.+.++....+.. .++.+...
T Consensus 4 ~i~~~l~ey~~~~D~---~ea~~~l~~L~~~~~~~~vv~~~i~~~l---e~~~~~~~~~~~Ll~~L~~~~--~~~~~~~~ 75 (113)
T smart00544 4 KIFLIIEEYLSSGDT---DEAVHCLLELKLPEQHHEVVKVLLTCAL---EEKRTYREMYSVLLSRLCQAN--VISTKQFE 75 (113)
T ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHhCCCcchHHHHHHHHHHHH---cCCccHHHHHHHHHHHHHHcC--CcCHHHHH
Confidence 455566666666543 677777777653 3444444444433 235678888888888777553 45666555
Q ss_pred HHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
.--..+++.+.+ ..|.....+|..++.+...
T Consensus 76 ~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~~ 109 (113)
T smart00544 76 KGFWRLLEDIEDLELDIPNAWRNLAEFVARLISD 109 (113)
T ss_pred HHHHHHHhhChhhhcccccHHHHHHHHHHHHHHc
Confidence 555556666654 3567777788888877653
No 394
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=31.78 E-value=76 Score=31.69 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh-HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~-il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
..++..++..+.+.+...+....+++..+.-....... | ..+.. =+..++...+|+...|+...++.+.++.
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek------f-~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK------F-KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh------h-hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 46788888888888888889999999988776665311 0 11222 2456888999999999999999999886
Q ss_pred c
Q 013663 209 M 209 (438)
Q Consensus 209 ~ 209 (438)
.
T Consensus 545 c 545 (743)
T COG5369 545 C 545 (743)
T ss_pred c
Confidence 5
No 395
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=30.89 E-value=1.1e+02 Score=25.35 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=45.4
Q ss_pred hHHHHHHHHH--hhhch---hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhhhc
Q 013663 370 CSAAALDVLS--NVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH 430 (438)
Q Consensus 370 ~a~~~l~~l~--~~~~~---~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~ 430 (438)
...++|..+. ..... .....++|.+..++++.. -.+..+|+..+..+...+++.+...
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~---E~~i~~aL~~L~~i~~~f~~~I~~~ 107 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKY---ESYISVALEMLRSILKKFGPVIRSN 107 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888887 33333 566889999999999987 6788999999999999888777643
No 396
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.73 E-value=6.5e+02 Score=26.37 Aligned_cols=133 Identities=12% Similarity=0.218 Sum_probs=74.6
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh-----HHhHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHH
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-----FVSMDQYLQGLFLLSNDP----SAEVRKLVCAAFNLLI 249 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-----~~~~~~ll~~l~~~~~~~----~~~~~~~a~~~l~~l~ 249 (438)
...+..++.....-.+.....|+.|+..++..-..-| .+++..++.++-.++.++ |+.-.-.-|+.+.++-
T Consensus 254 ~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 254 SSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred chHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 4567778888888888888899999988876532111 345566777777766543 3444445556655554
Q ss_pred hhCc--cc-----ccccHHHHHHHHhhhhcC--CChHHHhHHHHHHHHhhcc-C---C-ChhhHHhhHHHHHHHHH
Q 013663 250 EVRP--SF-----LEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA-Q---L-PHENLKEFLPRLVPVLL 311 (438)
Q Consensus 250 ~~~~--~~-----~~~~~~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~-~---~-~~~~~~~~l~~l~~~l~ 311 (438)
.+|- +. ....+.-+.+++++.+++ -...-...-+.+|..+..+ | . .+-.+..|.+++....+
T Consensus 334 tNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~y~PeIt~afi 409 (1082)
T KOG1410|consen 334 TNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDTYCPEITKAFI 409 (1082)
T ss_pred hhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCCChHHHhhhcHHHHHHHH
Confidence 4331 11 111223344555555543 1223345667788887654 2 1 12344556666655443
No 397
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=29.95 E-value=4.7e+02 Score=24.47 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-H-----------hhcCCcHHHHHHHHHhhccCCCHHHHHHHHHH
Q 013663 7 WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQ-Q-----------YSQFPDFNNYLAFILARAEGKSVEIRQAAGLL 74 (438)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~-~-----------~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~ 74 (438)
+.|.-..++++.++|...+..+.+...+-+.-.|- - |...+..+++|+....+.++.+.-+|=+++.+
T Consensus 146 ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~L 225 (312)
T PF04869_consen 146 GEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFL 225 (312)
T ss_dssp TS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHH
Confidence 44444455666666655444333313344444332 2 22345667777776555568889999999999
Q ss_pred HHHHHHhhhccCCHhhHHHHHHHhhhhh
Q 013663 75 LKNNLRTAYKSMSPSNQQYIKSELLPCL 102 (438)
Q Consensus 75 Lk~~i~~~w~~l~~~~~~~i~~~ll~~l 102 (438)
|.-..... .+-++-.+..+.+.+.+-+
T Consensus 226 LGicyef~-~~~s~~~R~~l~~ll~~ri 252 (312)
T PF04869_consen 226 LGICYEFS-TKDSPIPRATLHPLLTKRI 252 (312)
T ss_dssp HHHHHHT--S-SCCC-HHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCCCcCHHHHHHHHHHhc
Confidence 99887765 4444445555554444433
No 398
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=29.71 E-value=1.4e+02 Score=20.57 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=26.9
Q ss_pred hhccCCHhhHHHHHHHhhhhhhcCcHH-HHHHHHHHHHHH
Q 013663 82 AYKSMSPSNQQYIKSELLPCLGAADRH-IRSTVGTIVSVV 120 (438)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l~~~~~~-vr~~~a~~la~i 120 (438)
.|..++++.++.+..++...|..-... |+......++.+
T Consensus 16 ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~v 55 (68)
T PF06628_consen 16 LYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYKV 55 (68)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHh
Confidence 466678888888888888888765444 766655544443
No 399
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=29.19 E-value=1.6e+02 Score=23.20 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhc-cCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhccccc
Q 013663 114 GTIVSVVVQLGG-IAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 114 a~~la~i~~~~~-~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+..++.|+...+ ...+++++..|...+.+. ++.+..-+|.++.+++.+-+..
T Consensus 19 ~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~ 73 (123)
T cd03571 19 GTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSER 73 (123)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHH
Confidence 456677776653 467889999999999875 7888888999999998877653
No 400
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.57 E-value=9.5e+02 Score=27.62 Aligned_cols=220 Identities=17% Similarity=0.087 Sum_probs=121.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCc-----HHHHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 23 QQISPSSTADKSQIWQQLQQYSQFPD-----FNNYLAFILARA----EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 23 ~~~s~d~~~~r~~A~~~L~~~~~~p~-----~~~~l~~il~~~----~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
...++..+ +|...-+.+-++.+.++ -|+...+++.+. .....++-+.+-..||-...-....+|.+....
T Consensus 850 ~~s~~~~e-vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 850 DNSSRGVE-VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred HhcCccce-eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 34455556 77777777776665443 155555555432 112233444455556544444445677777766
Q ss_pred HHHHhhhhhhc-CcHHHHHHH---HHHHHHHHHh--------------------h-------ccCchHHHHHHHHHHhcc
Q 013663 94 IKSELLPCLGA-ADRHIRSTV---GTIVSVVVQL--------------------G-------GIAGWLELLQALVTCLDS 142 (438)
Q Consensus 94 i~~~ll~~l~~-~~~~vr~~~---a~~la~i~~~--------------------~-------~~~~w~~ll~~l~~~l~~ 142 (438)
+.+.+...-.. .+-.|.-.+ -+.++...+. . +..-|=-++..|.+++.+
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 66666555432 111111111 1112221111 0 124476778888888888
Q ss_pred CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh-HHHHHHHhccC---------CCHHHH----HHHHHHHHHHH
Q 013663 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI-FLPRLLQFFQS---------PHTSLR----KLSLGSVNQFI 208 (438)
Q Consensus 143 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~-il~~l~~~l~~---------~~~~vr----~~al~~l~~~~ 208 (438)
..+.+|.+|.+++-+++..-+..+.+. .... +...++..+.. +..+++ ...+-++++++
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~-------aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIa 1081 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTN-------AWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIA 1081 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChh-------HHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHH
Confidence 889999999999999988766554432 1222 23333444431 122232 23455666666
Q ss_pred cccchhh---------HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 209 MLMPSAL---------FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 209 ~~~~~~~---------~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
+..++.+ ....+.+++.+-.+..+..+++...+++++.++..
T Consensus 1082 klf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1082 KLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 6655443 22334556666666677788888888888777654
No 401
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=28.40 E-value=72 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHhhhccCCHhhHHHHHHHhhhhh
Q 013663 75 LKNNLRTAYKSMSPSNQQYIKSELLPCL 102 (438)
Q Consensus 75 Lk~~i~~~w~~l~~~~~~~i~~~ll~~l 102 (438)
|...+...|+..+++.++.+.+.|-+.+
T Consensus 37 LGVlFE~~W~~~~~~ek~~m~~~l~~~l 64 (65)
T TIGR03092 37 LGVLFEAIWKHANEQEKDEMLETLEQGV 64 (65)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 4555677899999999888877776654
No 402
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.39 E-value=95 Score=24.02 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=27.2
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (438)
.=.++.+++.+.|++.+|...|++.|..++..
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34577889999999999999999999887754
No 403
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.16 E-value=5.6e+02 Score=25.54 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=57.3
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHH
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~ 225 (438)
.....|+..|..+.+++..++. ..-..++..+++.+.-.+.++-..+.+.|..+--+......-.-..++..
T Consensus 278 qLLrva~ylLlNlAed~~~ElK--------MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveK 349 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELK--------MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEK 349 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHH--------HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHH
Confidence 3445677777777777766532 12356777888888888877777777666554333221110001245566
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 226 LFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 226 l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
+..++....++++...+..+-.+.
T Consensus 350 L~klfp~~h~dL~~~tl~LlfNlS 373 (791)
T KOG1222|consen 350 LLKLFPIQHPDLRKATLMLLFNLS 373 (791)
T ss_pred HHHhcCCCCHHHHHHHHHHhhhcc
Confidence 666665566777777776665554
No 404
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.67 E-value=5.6e+02 Score=24.31 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=91.4
Q ss_pred cHHHHHHHHHHHHHHHHhh-ccCchHH--HHHHHHHHhcc-CChhhHh---HHHHHHHHHHhccccccccCCCCCCcchh
Q 013663 106 DRHIRSTVGTIVSVVVQLG-GIAGWLE--LLQALVTCLDS-NDINHME---GAMDALSKICEDIPQVLDSDVPGLAECPI 178 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~-~~~~w~~--ll~~l~~~l~~-~~~~~r~---~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 178 (438)
+|.+-..++..+..++..+ .-..-.+ =+..++.++.+ ++...|. .++..|+.+...-+-. + .+ .-
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvK--s---~I---V~ 326 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVK--S---TI---VE 326 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchH--H---HH---HH
Confidence 4666666777777777543 1111111 24566667766 3333443 3344444433211110 0 00 00
Q ss_pred hhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHcccchhhHHhHHH-HHHHHHHhh-CCCC-HHHHHHHHHHHHHHHhhCc
Q 013663 179 NIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YLQGLFLLS-NDPS-AEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 179 ~~il~~l~~~l~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-ll~~l~~~~-~~~~-~~~~~~a~~~l~~l~~~~~ 253 (438)
..-++.+...+. ..++.|-..++-++.-+..-.|+.-...++. .-....+.+ .+|. ..+.+++|..+-.++.+..
T Consensus 327 ~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 327 KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 112334444332 2467788888888877666666544333321 111112222 2333 4788999999999988776
Q ss_pred ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 254 ~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
..-++++..=++-++...+..+++++..|-..+..+
T Consensus 407 ~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 407 ENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 666666666666666666666666655554333433
No 405
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.52 E-value=3.1e+02 Score=22.88 Aligned_cols=57 Identities=5% Similarity=0.004 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHhhCc--ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 233 PSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 233 ~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
.+......++.|+-.++.... ..+.. .+..+..+..++...+..+|..+++++..+|
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~-~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLS-HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHC-SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHc-CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 445777788899887775432 11111 3466777777777888999999999998876
No 406
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=25.66 E-value=7.8e+02 Score=25.66 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhhc-CCc--HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 11 EQGFNEICRLLEQQ--ISPSSTADKSQIWQQLQQYSQ-FPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 11 ~~~~~~l~~~l~~~--~s~d~~~~r~~A~~~L~~~~~-~p~--~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+.....+.|.|... .+|+.. .|+.+..-+..+-. .|+ -+.++..+|.+ ..-+++|-.+...+|..+.+.|..
T Consensus 436 ~~~~~~~~q~L~~i~~~~p~~~-lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~--c~~~~~k~~~I~~lKd~i~~a~~~ 512 (633)
T PF08568_consen 436 SEVFMQFLQALLLISVYCPSPE-LRKIAFTLLTRILHLFPEETRFKFIRDLLEN--CPFESLKASAIGWLKDEILKALQS 512 (633)
T ss_pred HHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHCCcHhHHHHHHHHHhc--CCCHhHHHHHHHHHHHHHHHHhcc
Confidence 44566677777664 578888 99999999887663 443 34567777875 888999999999999999876654
Q ss_pred C
Q 013663 86 M 86 (438)
Q Consensus 86 l 86 (438)
-
T Consensus 513 ~ 513 (633)
T PF08568_consen 513 S 513 (633)
T ss_pred C
Confidence 3
No 407
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.60 E-value=4.8e+02 Score=23.19 Aligned_cols=125 Identities=23% Similarity=0.277 Sum_probs=78.5
Q ss_pred hhcCcHHHHHHHHHHHHHHHHhh---------ccCchHH---HHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc-
Q 013663 102 LGAADRHIRSTVGTIVSVVVQLG---------GIAGWLE---LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS- 168 (438)
Q Consensus 102 l~~~~~~vr~~~a~~la~i~~~~---------~~~~w~~---ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~- 168 (438)
+.++++.|.+.+..+.+.+.... -.+.|.. +-..++..+.+.++.+|..++.++..++-.....-..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 45677788777777777776542 1245754 4567888888889999999999999987654332110
Q ss_pred --------C-----CC---CCC-----cchhhhHHHHHHHhccCCC--HHHHHHHHHHHHHHHcccchhhHHhHHHHHHH
Q 013663 169 --------D-----VP---GLA-----ECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 169 --------~-----~~---~~~-----~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~ 225 (438)
+ ++ .++ +..-..++..++..+.++. ..+-.+.+.+|..++..-|.. ++.++++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~----~~~Il~~ 157 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQF----MSRILPA 157 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGG----HHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHH----HHHHHHH
Confidence 0 01 111 2334557777888887764 666778888888888776643 3355565
Q ss_pred HHHhh
Q 013663 226 LFLLS 230 (438)
Q Consensus 226 l~~~~ 230 (438)
+.++-
T Consensus 158 ll~~~ 162 (239)
T PF11935_consen 158 LLSFN 162 (239)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 55543
No 408
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.87 E-value=4.6e+02 Score=26.06 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=46.4
Q ss_pred HHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
+-.+-+...++.+.+--.-+..|..+|.....+ +......|+..+.....++|..++..+..++.-.
T Consensus 9 ~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee------------~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs 75 (661)
T KOG2374|consen 9 IGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE------------VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRS 75 (661)
T ss_pred HHHHHHHhhcCCcccChHHHHHHHHHHhccHHH------------HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Confidence 333344445555555555677788887766553 4556677888888999999999999998876543
No 409
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.84 E-value=2.8e+02 Score=20.30 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=35.3
Q ss_pred hhHHHHHHHhhhhhhcC--cHHHHHHHHHHHHHHHHhh-cc-CchHHHHHHHHHHhccCC-hhhHhHHHHHH
Q 013663 89 SNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLG-GI-AGWLELLQALVTCLDSND-INHMEGAMDAL 155 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~--~~~vr~~~a~~la~i~~~~-~~-~~w~~ll~~l~~~l~~~~-~~~r~~al~~l 155 (438)
+..+.+...|-+.+++. +..||+++..++-.+-... .+ -.-...+..|-+..++++ |.+.+.-++-+
T Consensus 13 e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~v 84 (93)
T COG1698 13 EKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNV 84 (93)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 33334444444544543 6788888888877765422 22 223456666666655554 33444444433
No 410
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=24.81 E-value=3.9e+02 Score=23.02 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
.....++.+++.++..+.....+.+..++..+.++-.+++...|..+=++++..++.-
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am 72 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM 72 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC
Confidence 3455666777776666654455667777888877777666778888888888888754
No 411
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=24.70 E-value=2.7e+02 Score=23.23 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=37.8
Q ss_pred hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
......++.|+..++..-... . .+ -..+..+..+..++.+++..+|..|++.|..++
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~-~----~v--~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGL-E----AV--LSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHH-H----HH--HCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHH-H----HH--HcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 456667788888777644321 0 00 013557788899999999999999999997764
No 412
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=24.24 E-value=1.4e+02 Score=17.65 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHhh
Q 013663 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYS 44 (438)
Q Consensus 15 ~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~ 44 (438)
..|...|....+. |.- +|.+|...|+++.
T Consensus 4 ~~l~r~Lk~V~~~D~D~l-vr~hA~~~Le~Le 34 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDL-VREHAQDALEELE 34 (36)
T ss_pred HHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHh
Confidence 4455555555444 444 7888888777653
No 413
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.07 E-value=4.1e+02 Score=21.91 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC
Q 013663 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (438)
Q Consensus 112 ~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (438)
....++..+++.. ...-++++..+.+.+-+........-..+|..++...+-.+.. + ..-+..++..+..
T Consensus 37 LG~~IL~~~fk~h-~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle--------~-~~~l~~~ld~l~~ 106 (158)
T PF14676_consen 37 LGIQILLELFKVH-EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLE--------C-SSKLKELLDYLSF 106 (158)
T ss_dssp HHHHHHHHHHHH--GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS---------S--HHHHGGGGGTTT
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHH--------H-HHHHHHHHHHHHh
Confidence 4556666666553 2233577777777765433332223478899999888865431 1 1122234444444
Q ss_pred CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
-..++...-++++..++..-+ .+ -+.++-.+-+.+-..+.+.|..|+..+.
T Consensus 107 lp~~~a~~ll~Al~PLi~~s~-~l---rd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 107 LPGDVAIGLLRALLPLIKFSP-SL---RDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp S-HHHHHHHHHHHHHHHTT-H-HH---HHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCH-HH---HHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 456665566666666666532 11 2346666767776778888988887664
No 414
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=23.69 E-value=5e+02 Score=22.77 Aligned_cols=75 Identities=8% Similarity=-0.005 Sum_probs=50.8
Q ss_pred cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHH
Q 013663 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (438)
...|+++++......++.+.-.|..++.+.-.-++ .. .....+++.+-..+.|...-|+.+.=.+|.
T Consensus 113 ~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k---~~----------~~~~~if~i~E~~l~d~e~fV~KAigWaLr 179 (222)
T COG4912 113 IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKK---KT----------LDLLEIFEIIELLLGDKEFFVQKAIGWALR 179 (222)
T ss_pred cccCHHHHHHHHhccccchHHHHHHHHHHHHHHhc---Cc----------cchhHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 46899999999666666555555554443322222 11 123468888999999999999999888888
Q ss_pred HHHcccch
Q 013663 206 QFIMLMPS 213 (438)
Q Consensus 206 ~~~~~~~~ 213 (438)
.+....++
T Consensus 180 q~~k~~~e 187 (222)
T COG4912 180 QIGKHSNE 187 (222)
T ss_pred HHHhhchH
Confidence 88775443
No 415
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.49 E-value=2.1e+02 Score=22.33 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhc-cCchHHHHHHHHHHh---ccCChhhHhHHHHHHHHHHhccccc
Q 013663 114 GTIVSVVVQLGG-IAGWLELLQALVTCL---DSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 114 a~~la~i~~~~~-~~~w~~ll~~l~~~l---~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
...+..|+...+ ......++..+...+ ...++.+..-||.+|.+++.+-++.
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~ 76 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER 76 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH
Confidence 445566776653 367788999999999 4457888899999999999877764
No 416
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.18 E-value=8.4e+02 Score=24.82 Aligned_cols=68 Identities=15% Similarity=0.306 Sum_probs=46.9
Q ss_pred hHHHHHHHhc--cCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 180 IFLPRLLQFF--QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 180 ~il~~l~~~l--~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
++++.++..+ ++-+.++-.+|..++..++.+-+..+..+++.++. +..+|..|.....+|..+....+
T Consensus 649 efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~s------kq~np~~~qrLa~Af~~Lt~sn~ 718 (748)
T KOG4541|consen 649 EFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELIS------KQANPNFKQRLANAFQVLTTSNQ 718 (748)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh------hccChHHHHHHHHHHHHHhccCC
Confidence 4666666644 45577888999999999998876655544444432 23457788888888888876554
No 417
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=21.72 E-value=1.1e+02 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHhhhccCCHhhHHHHHHHhhhhh
Q 013663 75 LKNNLRTAYKSMSPSNQQYIKSELLPCL 102 (438)
Q Consensus 75 Lk~~i~~~w~~l~~~~~~~i~~~ll~~l 102 (438)
|...+...|++.+++.++.+.+.|-+.+
T Consensus 40 LGVlFE~~W~~~~~~ek~~m~~~l~~~l 67 (68)
T PRK02955 40 LGVLFEVIWKNADENEKDEMLETLEQGL 67 (68)
T ss_pred chhHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 4455667798899888888877776554
No 418
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.39 E-value=8.3e+02 Score=26.00 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCcccccccHH--HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 239 KLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 239 ~~a~~~l~~l~~~~~~~~~~~~~--~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
....+.+.++....|+.+...+. .....++.++-++++++++.|.+++..+...
T Consensus 499 ~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 499 DLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 33444555555444444433332 3344455556677888998998888887654
No 419
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.32 E-value=5.4e+02 Score=22.25 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc
Q 013663 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (438)
Q Consensus 63 ~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~ 142 (438)
..|..|..|-..++.. +.+........+..+..++....|..+...+....+.... +-++.+...+..
T Consensus 24 ~~P~~R~lak~~~~~~--------~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~----~~~~~~~~~l~~ 91 (208)
T cd07064 24 KTPERRALSKPFLKES--------KLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTP----EDLPLLEELITT 91 (208)
T ss_pred ChHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHcC
Confidence 4566676666555432 2222333333333444555556666666655554332222 224444444444
Q ss_pred -CChhhHhH-HHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH
Q 013663 143 -NDINHMEG-AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (438)
Q Consensus 143 -~~~~~r~~-al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (438)
++++.... +-.+++.+... -+...+.+.....+++.-+|..|+-+...+.... .++
T Consensus 92 ~~~Wd~vD~~~~~i~g~~~~~----------------~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~~ 149 (208)
T cd07064 92 KSWWDTVDSLAKVVGGILLAD----------------YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DTD 149 (208)
T ss_pred CchHHHHHHHHHHHhHHHHhC----------------ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CHH
Confidence 34554332 22223332211 1334567788888998888888876544443321 123
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH
Q 013663 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (438)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 260 (438)
.+...+...+.|++.-+++.+-..|-++.+..|+.+..++
T Consensus 150 ~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 150 LLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3444444556677777888889999999988776554444
No 420
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=21.16 E-value=4.5e+02 Score=21.28 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH-----H-hhccCCCHHHHHHHHHHHHHHHHhhhccCC
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFI-----L-ARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~i-----l-~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~ 87 (438)
++-+-+++..++...+.+.+.+....|.+|.=.|-.|..|.++ + .+-+.++.....++.-.|-|. -.+
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNl------C~d 88 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNL------CLD 88 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhh------ccC
Confidence 4556677777777655437888888899988888877766543 1 112356666666666666554 234
Q ss_pred HhhHHHHHHH-----hhhhhhcCcHHHHHHHHHHHHHHH
Q 013663 88 PSNQQYIKSE-----LLPCLGAADRHIRSTVGTIVSVVV 121 (438)
Q Consensus 88 ~~~~~~i~~~-----ll~~l~~~~~~vr~~~a~~la~i~ 121 (438)
+..++.|+.. ++..+++++..+-+.++..+-.+.
T Consensus 89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 4555666643 344556777666666665555443
No 421
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.37 E-value=5.4e+02 Score=21.87 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=70.6
Q ss_pred hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHH--HHHHHHHHHHHHHcccchhhHHhHHHH
Q 013663 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTS--LRKLSLGSVNQFIMLMPSALFVSMDQY 222 (438)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--vr~~al~~l~~~~~~~~~~~~~~~~~l 222 (438)
..+|..|..++..+...-...+ + +++ -.+.+...+..++.. ....+-.++..++..+. +..+...+
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~-~--------~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--~~~y~~~l 88 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTI-P--------HIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD--LPEYRYSL 88 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccc-c--------CCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--cHHHHHHH
Confidence 5789999999988883321211 0 111 113333444332211 11122233333332221 12334467
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC--CChHHHhHHHHHHHHhhcc
Q 013663 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 223 l~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~ 292 (438)
+.++.-......+.+.+.+..+|..++... +.-...+..++..++..+++ .++.+...+++++..+.+.
T Consensus 89 l~Glv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 89 LSGLVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HhHHHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 777766666666778888888888888532 11112234555555555543 4567777777777776654
No 422
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=20.18 E-value=8.6e+02 Score=24.15 Aligned_cols=211 Identities=10% Similarity=0.076 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHH
Q 013663 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVT 138 (438)
Q Consensus 63 ~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~---~~w~~ll~~l~~ 138 (438)
++...|--|+.-|+..+.++ ++ +....|=...-.++. +.+...|+.+...+-.++++... ..-..++..+..
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~--~~--~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~ 77 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKY--PL--SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISD 77 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhC--Cc--hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhc
Confidence 34566777777777776653 22 333333333333343 23677898888888888876522 222334444422
Q ss_pred HhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC---------------------------
Q 013663 139 CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--------------------------- 191 (438)
Q Consensus 139 ~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--------------------------- 191 (438)
. ..+..-..-+.+|..+.++=.+. . .+ ..++.|.+...+..
T Consensus 78 ~---~~~~d~~~~l~aL~~LT~~Grdi-~-----~~---~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 145 (464)
T PF11864_consen 78 P---SNDDDFDLRLEALIALTDNGRDI-D-----FF---EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLD 145 (464)
T ss_pred C---CCchhHHHHHHHHHHHHcCCcCc-h-----hc---ccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 2 22222223344444444322211 1 01 12222322222210
Q ss_pred CCHHHHHHHHHHHHHHHcccchhhH-HhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhh
Q 013663 192 PHTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ 269 (438)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~ 269 (438)
.+...-...+..+.+++++....+. ..+..++..++.+... ..+..-+.++..|..++. |...=..-++.++..+..
T Consensus 146 ~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCs 224 (464)
T PF11864_consen 146 NEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCS 224 (464)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhh
Confidence 0111223445555566665433232 3455677767666532 334445677777777765 222112234455555554
Q ss_pred hhcCCChHHHhHHHHHHHHhhcc
Q 013663 270 VNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 270 ~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.... .+....+-+.+..++.+
T Consensus 225 i~~~--~~l~~~~w~~m~nL~~S 245 (464)
T PF11864_consen 225 IVNS--VSLCKPSWRTMRNLLKS 245 (464)
T ss_pred Hhcc--cccchhHHHHHHHHHcC
Confidence 4322 25555665555665543
No 423
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=20.12 E-value=5.6e+02 Score=27.67 Aligned_cols=109 Identities=16% Similarity=0.213 Sum_probs=62.8
Q ss_pred hhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh----CCCC-HHHHHHHHHHHHHHHhh
Q 013663 178 INIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS----NDPS-AEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 178 ~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~-~~~~~~a~~~l~~l~~~ 251 (438)
.+.++-.+.+.+..+ +.+-|...++++++++..-++...+....+++.+.++. +++. +.+-...++.++.++..
T Consensus 531 lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~~ 610 (947)
T COG5657 531 LENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVFL 610 (947)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHh
Confidence 355555556666554 45667788899999888777766776666777666653 3443 45455556666666544
Q ss_pred CcccccccHHHHHHHHhhhhcCCChHH-HhHHHHHHHHhh
Q 013663 252 RPSFLEPHLRNLFEYMLQVNKDTDDDV-ALEACEFWHSYF 290 (438)
Q Consensus 252 ~~~~~~~~~~~li~~~~~~~~~~~~~v-~~~a~~~~~~~~ 290 (438)
.... .+.-+|.+...+.-.+.-+ ...+.|+|+.+-
T Consensus 611 ~~~~----~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~l 646 (947)
T COG5657 611 KSGM----CEITIPTLVLALVPEFPVLLSEDATELWSYVL 646 (947)
T ss_pred hhcc----cccchHHHHHhhCccchhhhhhhHHHHHHHHH
Confidence 3322 2344455444443222222 256677777653
Done!