Query 013663
Match_columns 438
No_of_seqs 164 out of 1565
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:46:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 6.7E-49 2.3E-53 415.9 36.9 401 5-436 3-403 (852)
2 1ibr_B P95, importin beta-1 su 100.0 6.5E-41 2.2E-45 330.4 31.2 369 16-436 2-411 (462)
3 2bpt_A Importin beta-1 subunit 100.0 3.6E-37 1.2E-41 326.7 34.2 373 15-436 4-414 (861)
4 1wa5_C Importin alpha RE-expor 100.0 8.7E-38 3E-42 334.2 29.0 379 14-422 4-435 (960)
5 1qgr_A Protein (importin beta 100.0 2.9E-35 9.9E-40 312.7 32.7 368 16-435 2-410 (876)
6 3m1i_C Exportin-1; heat repeat 100.0 6.9E-34 2.4E-38 306.5 30.1 396 11-435 12-497 (1049)
7 2x19_B Importin-13; nuclear tr 100.0 2.2E-32 7.7E-37 293.3 31.7 385 13-435 22-492 (963)
8 2x1g_F Cadmus; transport prote 100.0 5.4E-33 1.8E-37 298.1 25.6 385 13-436 5-508 (971)
9 4hat_C Exportin-1; heat repeat 100.0 5.2E-29 1.8E-33 263.7 31.8 395 12-436 13-498 (1023)
10 3ibv_A Exportin-T; karyopherin 100.0 5.9E-29 2E-33 263.1 29.7 382 13-435 4-492 (980)
11 3a6p_A Exportin-5; exportin-5, 100.0 2.1E-27 7.3E-32 257.3 28.3 387 10-426 6-520 (1204)
12 3gjx_A Exportin-1; transport, 99.9 4E-26 1.4E-30 240.5 25.3 393 12-436 25-524 (1073)
13 1u6g_C TIP120 protein, CAND1; 99.9 9.6E-26 3.3E-30 247.5 29.1 385 15-436 6-478 (1230)
14 4fdd_A Transportin-1; heat rep 99.9 5.7E-20 1.9E-24 194.4 35.2 365 6-436 79-486 (852)
15 1b3u_A Protein (protein phosph 99.9 9.8E-20 3.3E-24 184.5 29.3 329 62-427 137-476 (588)
16 1b3u_A Protein (protein phosph 99.8 1.3E-19 4.6E-24 183.5 25.4 373 16-426 49-436 (588)
17 2bpt_A Importin beta-1 subunit 99.8 6.4E-18 2.2E-22 179.0 33.0 360 22-435 418-827 (861)
18 1u6g_C TIP120 protein, CAND1; 99.8 1.3E-18 4.4E-23 191.0 24.2 330 53-435 8-376 (1230)
19 1qgr_A Protein (importin beta 99.8 3.4E-17 1.2E-21 173.6 33.7 380 17-436 218-694 (876)
20 1ibr_B P95, importin beta-1 su 99.8 9.1E-17 3.1E-21 157.6 28.0 340 28-435 50-453 (462)
21 2jdq_A Importin alpha-1 subuni 99.7 1.1E-15 3.9E-20 149.4 27.9 342 17-424 22-393 (450)
22 1wa5_B Importin alpha subunit; 99.7 1.5E-15 5E-20 152.0 25.9 342 17-424 89-460 (530)
23 2vgl_B AP-2 complex subunit be 99.7 8E-15 2.7E-19 148.2 28.3 333 19-424 53-422 (591)
24 4b8j_A Importin subunit alpha- 99.7 1.4E-14 5E-19 144.7 28.2 342 15-423 74-445 (528)
25 2jdq_A Importin alpha-1 subuni 99.7 9.7E-15 3.3E-19 142.7 22.7 312 50-422 22-348 (450)
26 1wa5_B Importin alpha subunit; 99.6 1.5E-14 5.2E-19 144.6 21.1 312 48-423 87-414 (530)
27 4b8j_A Importin subunit alpha- 99.6 2.1E-13 7.2E-18 136.2 23.0 310 50-422 76-401 (528)
28 3ul1_B Importin subunit alpha- 99.6 7E-13 2.4E-17 131.6 26.4 339 17-421 59-430 (510)
29 2vgl_B AP-2 complex subunit be 99.6 7.6E-13 2.6E-17 133.8 26.4 364 20-434 18-395 (591)
30 3tpo_A Importin subunit alpha- 99.6 1.9E-12 6.5E-17 129.2 27.8 340 16-421 77-449 (529)
31 2qk2_A LP04448P; mini spindles 99.6 4.3E-13 1.5E-17 119.7 20.6 202 131-392 15-217 (242)
32 2qk2_A LP04448P; mini spindles 99.5 6.4E-13 2.2E-17 118.6 21.0 195 97-306 19-219 (242)
33 1w63_A Adapter-related protein 99.5 1.7E-12 5.9E-17 131.7 23.1 295 25-395 80-432 (618)
34 2qk1_A Protein STU2; STU2P, XM 99.5 1.8E-12 6E-17 115.8 17.9 199 98-305 21-233 (249)
35 2qk1_A Protein STU2; STU2P, XM 99.5 4.3E-12 1.5E-16 113.3 20.2 206 136-393 21-233 (249)
36 1w63_A Adapter-related protein 99.5 1.9E-11 6.3E-16 124.1 27.0 172 62-253 81-266 (618)
37 1wa5_C Importin alpha RE-expor 99.4 1.2E-10 4.2E-15 124.4 27.3 346 32-436 377-764 (960)
38 3tpo_A Importin subunit alpha- 99.4 9.8E-10 3.4E-14 109.5 31.3 274 26-315 130-430 (529)
39 4hxt_A De novo protein OR329; 99.4 2.8E-11 9.5E-16 108.2 18.2 228 50-292 4-242 (252)
40 4db8_A Armadillo-repeat protei 99.4 2E-11 6.9E-16 109.4 17.0 234 48-291 12-251 (252)
41 2vgl_A Adaptor protein complex 99.4 4.7E-10 1.6E-14 113.6 28.8 334 17-427 76-439 (621)
42 1oyz_A Hypothetical protein YI 99.3 4.5E-10 1.5E-14 102.3 25.0 196 49-290 24-220 (280)
43 4hxt_A De novo protein OR329; 99.3 7.9E-11 2.7E-15 105.2 19.4 226 17-258 4-249 (252)
44 3ul1_B Importin subunit alpha- 99.3 2.1E-10 7.1E-15 113.8 22.7 311 50-424 59-390 (510)
45 2z6g_A B-catenin; FULL-length, 99.3 1.3E-09 4.3E-14 113.6 29.5 331 25-422 160-519 (780)
46 3now_A UNC-45 protein, SD10334 99.3 1.7E-09 5.8E-14 110.8 29.7 350 18-424 293-697 (810)
47 2z6h_A Catenin beta-1, beta-ca 99.3 1.5E-09 5.2E-14 110.9 29.1 331 25-423 24-384 (644)
48 1oyz_A Hypothetical protein YI 99.3 7.3E-10 2.5E-14 100.9 24.0 225 17-291 25-250 (280)
49 3now_A UNC-45 protein, SD10334 99.3 2.6E-09 8.8E-14 109.5 30.1 350 14-421 375-782 (810)
50 1jdh_A Beta-catenin; beta-cate 99.3 7.3E-09 2.5E-13 103.1 32.1 331 25-423 27-387 (529)
51 2x19_B Importin-13; nuclear tr 99.3 1.7E-09 5.7E-14 115.9 28.3 275 108-436 422-729 (963)
52 2z6g_A B-catenin; FULL-length, 99.3 1.9E-09 6.5E-14 112.3 27.1 343 16-424 116-475 (780)
53 2x1g_F Cadmus; transport prote 99.2 1.1E-09 3.8E-14 117.3 25.2 274 108-436 436-737 (971)
54 4db6_A Armadillo repeat protei 99.2 5E-10 1.7E-14 97.2 16.2 192 93-291 12-209 (210)
55 4db8_A Armadillo-repeat protei 99.2 2.2E-10 7.4E-15 102.6 14.0 218 17-250 14-251 (252)
56 3ltm_A Alpha-REP4; protein eng 99.2 1.5E-09 5E-14 94.4 16.9 189 11-253 18-206 (211)
57 1jdh_A Beta-catenin; beta-cate 99.1 1.7E-08 5.7E-13 100.5 26.1 332 20-419 148-528 (529)
58 2iw3_A Elongation factor 3A; a 99.1 2.8E-08 9.5E-13 103.4 27.9 279 11-314 10-303 (986)
59 3ltm_A Alpha-REP4; protein eng 99.1 1.8E-09 6.1E-14 93.9 16.4 190 44-292 15-204 (211)
60 2vgl_A Adaptor protein complex 99.1 2E-08 7E-13 101.5 26.2 286 62-421 85-398 (621)
61 3ltj_A Alpharep-4; protein eng 99.1 3.8E-09 1.3E-13 91.0 16.9 110 26-158 25-134 (201)
62 4db6_A Armadillo repeat protei 99.1 1.5E-09 5.3E-14 94.1 14.2 189 47-250 11-209 (210)
63 3ltj_A Alpharep-4; protein eng 99.1 5.3E-09 1.8E-13 90.1 17.2 154 47-249 13-166 (201)
64 2z6h_A Catenin beta-1, beta-ca 99.1 3.7E-08 1.3E-12 100.6 24.9 270 95-423 16-294 (644)
65 1xm9_A Plakophilin 1; armadill 99.0 2.7E-07 9.2E-12 90.0 28.5 340 20-421 7-449 (457)
66 1xqr_A HSPBP1 protein; armadil 99.0 4.8E-08 1.6E-12 89.0 21.5 151 96-253 84-241 (296)
67 3nmz_A APC variant protein; pr 99.0 8.9E-07 3E-11 85.5 30.1 353 14-426 31-455 (458)
68 2iw3_A Elongation factor 3A; a 98.9 4.6E-07 1.6E-11 94.4 26.6 281 66-421 29-324 (986)
69 3l6x_A Catenin delta-1; cateni 98.8 1.6E-05 5.6E-10 78.7 31.7 349 17-421 50-476 (584)
70 3nmw_A APC variant protein; AR 98.8 1.2E-06 4.2E-11 81.8 22.3 248 33-292 49-335 (354)
71 3ibv_A Exportin-T; karyopherin 98.8 4.2E-07 1.5E-11 96.5 21.4 324 62-436 204-581 (980)
72 2db0_A 253AA long hypothetical 98.7 2.2E-05 7.7E-10 63.7 25.2 205 21-250 37-246 (253)
73 2db0_A 253AA long hypothetical 98.7 2E-05 6.9E-10 64.0 24.3 215 46-290 30-245 (253)
74 3tjz_B Coatomer subunit gamma; 98.7 1.4E-06 4.8E-11 80.7 19.8 280 99-435 31-330 (355)
75 3m1i_C Exportin-1; heat repeat 98.7 3.4E-06 1.1E-10 91.0 25.5 200 108-315 428-642 (1049)
76 1xqr_A HSPBP1 protein; armadil 98.7 5.7E-07 1.9E-11 81.9 16.6 178 108-292 55-239 (296)
77 4hat_C Exportin-1; heat repeat 98.6 4.8E-06 1.6E-10 88.6 24.4 193 115-315 435-642 (1023)
78 1xm9_A Plakophilin 1; armadill 98.6 3.5E-06 1.2E-10 82.1 21.6 310 50-424 4-409 (457)
79 3l6x_A Catenin delta-1; cateni 98.6 5.5E-05 1.9E-09 74.9 29.1 311 50-423 50-434 (584)
80 3nmz_A APC variant protein; pr 98.6 9.8E-06 3.3E-10 78.2 22.9 246 35-292 167-451 (458)
81 3tjz_B Coatomer subunit gamma; 98.6 2.5E-07 8.6E-12 85.7 10.6 255 17-288 70-350 (355)
82 3nmw_A APC variant protein; AR 98.5 1.7E-05 5.7E-10 74.2 22.3 236 66-315 47-315 (354)
83 3b2a_A TON_1937, putative unch 98.5 8.8E-06 3E-10 69.0 16.7 181 94-293 34-220 (265)
84 3b2a_A TON_1937, putative unch 98.5 1.2E-05 4E-10 68.2 17.1 159 130-302 32-190 (265)
85 2of3_A ZYG-9; multifunctional 98.5 3.6E-05 1.2E-09 68.0 20.7 193 9-217 31-244 (266)
86 4ffb_C Protein STU2; tubulin f 98.4 1.6E-05 5.4E-10 71.9 18.9 195 136-384 14-216 (278)
87 3opb_A SWI5-dependent HO expre 98.4 1.1E-05 3.7E-10 81.5 18.2 231 46-292 455-729 (778)
88 2of3_A ZYG-9; multifunctional 98.4 4.3E-05 1.5E-09 67.5 19.7 192 185-434 51-249 (266)
89 4ffb_C Protein STU2; tubulin f 98.4 5E-06 1.7E-10 75.3 14.0 186 100-292 16-213 (278)
90 4ady_A RPN2, 26S proteasome re 98.3 0.00017 5.9E-09 74.5 24.2 242 94-426 430-681 (963)
91 3oc3_A Helicase MOT1, MOT1; re 98.2 4E-05 1.4E-09 73.2 15.6 131 62-208 185-327 (800)
92 4ady_A RPN2, 26S proteasome re 98.1 0.00023 7.7E-09 73.6 20.8 129 98-245 582-714 (963)
93 3opb_A SWI5-dependent HO expre 98.1 0.0016 5.6E-08 65.9 26.5 307 65-423 308-685 (778)
94 3gjx_A Exportin-1; transport, 98.0 0.00036 1.2E-08 74.2 19.5 199 109-315 455-668 (1073)
95 3l9t_A Putative uncharacterize 97.8 0.00021 7E-09 61.2 12.2 146 91-258 69-215 (240)
96 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00036 1.2E-08 66.8 13.1 189 29-246 242-432 (800)
97 1te4_A Conserved protein MTH18 97.7 6.2E-06 2.1E-10 65.4 0.4 113 21-157 18-130 (131)
98 3grl_A General vesicular trans 97.7 0.048 1.6E-06 53.9 27.3 212 15-253 21-244 (651)
99 1te4_A Conserved protein MTH18 97.7 9.7E-05 3.3E-09 58.3 7.1 121 46-206 10-130 (131)
100 3l9t_A Putative uncharacterize 97.5 0.011 3.7E-07 50.7 17.3 170 17-214 39-212 (240)
101 3u0r_A Apoptosis inhibitor 5; 97.4 0.11 3.6E-06 49.3 32.5 301 53-427 31-364 (507)
102 3tt9_A Plakophilin-2; cell adh 97.3 0.0061 2.1E-07 52.9 14.7 174 132-315 9-204 (233)
103 3a6p_A Exportin-5; exportin-5, 97.3 0.0084 2.9E-07 65.3 18.3 200 108-315 438-681 (1204)
104 3tt9_A Plakophilin-2; cell adh 97.2 0.033 1.1E-06 48.3 18.2 210 179-422 7-230 (233)
105 1vsy_4 Proteasome activator BL 97.1 0.31 1.1E-05 50.2 27.7 122 85-212 327-458 (799)
106 1upk_A MO25 protein; transfera 96.9 0.22 7.5E-06 44.9 28.1 188 97-294 82-286 (341)
107 3grl_A General vesicular trans 96.8 0.047 1.6E-06 54.0 16.7 155 127-292 17-196 (651)
108 3gs3_A Symplekin, LD45768P; he 96.5 0.41 1.4E-05 41.9 24.1 185 66-256 30-249 (257)
109 1vsy_5 Proteasome activator BL 96.4 0.036 1.2E-06 58.6 13.9 190 46-252 461-666 (997)
110 4atg_A TAF6; transcription, TF 96.3 0.096 3.3E-06 43.6 13.2 148 237-435 24-177 (196)
111 1lrv_A LRV, leucine-rich repea 96.2 0.0016 5.4E-08 57.0 2.1 133 62-285 61-193 (244)
112 1vsy_5 Proteasome activator BL 96.2 0.0096 3.3E-07 62.9 8.3 169 36-212 782-969 (997)
113 3o2t_A Symplekin; heat repeat, 96.2 0.78 2.7E-05 42.6 22.8 175 87-263 57-269 (386)
114 1vsy_4 Proteasome activator BL 96.1 1.2 4E-05 45.9 22.5 117 176-292 335-456 (799)
115 3gs3_A Symplekin, LD45768P; he 95.9 0.8 2.7E-05 40.0 22.6 146 92-250 11-173 (257)
116 4gmo_A Putative uncharacterize 95.8 0.041 1.4E-06 56.1 10.5 173 62-248 45-256 (684)
117 4gmo_A Putative uncharacterize 95.8 0.02 6.8E-07 58.4 8.1 153 131-292 35-215 (684)
118 1upk_A MO25 protein; transfera 95.5 0.31 1.1E-05 44.0 13.8 112 135-250 168-283 (341)
119 3fga_B Serine/threonine-protei 95.1 2.1 7.2E-05 39.9 20.7 235 17-261 131-377 (403)
120 2npp_B PP2A, B subunit, serine 94.7 2.3 7.8E-05 40.3 17.7 159 86-256 239-405 (449)
121 1w9c_A CRM1 protein, exportin 94.6 1.2 4.1E-05 40.1 14.9 126 190-315 83-225 (321)
122 1lsh_A Lipovitellin (LV-1N, LV 94.0 2.1 7.1E-05 45.9 18.0 137 48-206 391-540 (1056)
123 3o2t_A Symplekin; heat repeat, 93.7 4.3 0.00015 37.6 25.6 246 13-270 23-319 (386)
124 1lsh_A Lipovitellin (LV-1N, LV 93.6 9.2 0.00032 40.9 25.0 154 105-292 407-577 (1056)
125 1lrv_A LRV, leucine-rich repea 93.3 0.12 4.2E-06 45.0 5.8 85 25-153 60-144 (244)
126 3u0r_A Apoptosis inhibitor 5; 92.4 7.7 0.00026 36.9 32.3 279 11-319 25-326 (507)
127 3jxy_A Alkylpurine DNA glycosy 91.3 6.3 0.00022 33.7 14.3 131 62-217 72-203 (232)
128 3dad_A FH1/FH2 domain-containi 90.6 8.1 0.00028 34.9 14.4 142 15-163 118-289 (339)
129 4atg_A TAF6; transcription, TF 89.8 7.6 0.00026 32.1 15.2 150 86-250 5-162 (196)
130 1ho8_A Vacuolar ATP synthase s 89.1 16 0.00054 34.8 18.5 132 106-252 334-478 (480)
131 3g2s_A C-terminal fragment of 88.4 7.9 0.00027 30.5 12.2 92 154-254 31-130 (149)
132 3g2s_A C-terminal fragment of 88.2 1.7 5.9E-05 34.4 7.4 79 129-213 46-130 (149)
133 1mhq_A ADP-ribosylation factor 87.9 1.9 6.6E-05 34.0 7.5 77 130-212 37-119 (148)
134 3ldz_A STAM-1, signal transduc 87.5 5.8 0.0002 30.9 10.1 76 179-254 41-118 (140)
135 1x5b_A Signal transducing adap 85.9 11 0.00036 30.3 11.1 77 178-254 50-129 (163)
136 2b6c_A Hypothetical protein EF 85.7 15 0.00052 31.0 14.3 129 62-216 66-195 (220)
137 3dad_A FH1/FH2 domain-containi 85.6 20 0.00069 32.3 17.5 109 182-292 162-287 (339)
138 2fv2_A RCD1 required for cell 85.5 5.1 0.00018 34.6 9.3 117 177-293 97-226 (268)
139 1juq_A ADP-ribosylation factor 85.2 2.8 9.4E-05 34.1 7.3 77 130-212 49-131 (171)
140 1juq_A ADP-ribosylation factor 85.2 13 0.00045 30.0 11.4 77 178-254 48-132 (171)
141 2nsz_A Programmed cell death p 85.0 8.2 0.00028 29.5 9.6 110 8-123 1-115 (129)
142 1mhq_A ADP-ribosylation factor 84.3 11 0.00037 29.7 10.2 76 179-254 37-120 (148)
143 2npp_B PP2A, B subunit, serine 84.3 28 0.00097 32.9 20.6 91 200-292 304-400 (449)
144 3ldz_A STAM-1, signal transduc 84.0 2.1 7.3E-05 33.4 5.9 78 129-212 40-117 (140)
145 1x5b_A Signal transducing adap 83.8 3.2 0.00011 33.4 7.0 98 104-212 30-128 (163)
146 1w9c_A CRM1 protein, exportin 83.1 26 0.00088 31.5 19.6 178 130-315 72-284 (321)
147 1sz9_A PCF11 protein; RNA poly 83.0 15 0.00051 28.7 11.6 76 128-210 40-115 (144)
148 2b6c_A Hypothetical protein EF 81.1 21 0.0007 30.1 11.6 138 98-260 60-198 (220)
149 2ion_A PDCD4, programmed cell 78.9 17 0.00058 28.7 9.6 110 8-123 3-117 (152)
150 3qml_C Protein SLS1, nucleotid 78.1 18 0.00061 32.1 10.2 154 127-290 18-188 (315)
151 3zyq_A Hepatocyte growth facto 76.4 27 0.00092 29.6 10.8 77 178-254 43-122 (226)
152 1vdy_A Hypothetical protein (R 75.4 6.5 0.00022 30.6 6.0 52 114-165 29-83 (140)
153 3jxy_A Alkylpurine DNA glycosy 72.8 21 0.00072 30.4 9.4 137 100-261 68-206 (232)
154 3fga_B Serine/threonine-protei 72.0 63 0.0022 30.0 21.9 197 83-292 138-367 (403)
155 1elk_A Target of MYB1; superhe 70.5 12 0.0004 29.8 6.6 97 104-211 31-132 (157)
156 3qml_C Protein SLS1, nucleotid 70.2 59 0.002 28.9 14.7 155 105-270 82-266 (315)
157 2jak_A Serine/threonine-protei 70.0 69 0.0024 29.6 15.0 111 86-204 251-362 (392)
158 3zyq_A Hepatocyte growth facto 70.0 8.3 0.00028 32.8 6.0 98 104-212 23-121 (226)
159 1ho8_A Vacuolar ATP synthase s 68.9 11 0.00038 35.8 7.1 70 131-209 395-476 (480)
160 2rg8_A Programmed cell death p 68.5 40 0.0014 26.9 9.5 103 13-124 9-117 (165)
161 3s4w_B Protein FACD2, fanconi 67.9 1.4E+02 0.0049 32.4 18.8 201 34-249 325-548 (1323)
162 1dvp_A HRS, hepatocyte growth 66.9 11 0.00037 31.9 6.1 78 128-211 39-117 (220)
163 2zu6_B Programmed cell death p 66.4 35 0.0012 30.5 9.6 110 7-123 159-274 (307)
164 3ut4_A CTHE_2751, putative unc 66.3 42 0.0014 25.7 11.1 101 85-207 23-128 (134)
165 1t06_A Hypothetical protein; s 66.3 50 0.0017 28.1 10.3 75 44-124 104-182 (235)
166 1dvp_A HRS, hepatocyte growth 64.0 64 0.0022 27.0 11.0 76 178-253 40-118 (220)
167 2fv2_A RCD1 required for cell 59.7 86 0.0029 27.1 18.1 100 145-251 116-225 (268)
168 1elk_A Target of MYB1; superhe 59.5 63 0.0022 25.5 10.6 75 178-252 51-132 (157)
169 3eiq_C Programmed cell death p 59.1 54 0.0018 30.0 9.6 111 6-123 209-325 (358)
170 4flb_A Regulation of nuclear P 58.3 58 0.002 24.6 10.7 101 97-209 12-112 (132)
171 1vdy_A Hypothetical protein (R 55.0 59 0.002 25.1 7.8 71 178-248 47-128 (140)
172 3rru_A TOM1L1 protein; structu 45.4 42 0.0014 26.4 5.7 78 129-212 51-133 (152)
173 2zu6_B Programmed cell death p 43.7 1.6E+02 0.0054 26.2 9.9 101 15-124 4-110 (307)
174 3l6a_A Eukaryotic translation 42.5 1.5E+02 0.0051 27.1 9.8 105 12-124 10-121 (364)
175 3s4w_B Protein FACD2, fanconi 42.1 3.7E+02 0.013 29.3 22.8 206 32-251 361-607 (1323)
176 3rru_A TOM1L1 protein; structu 40.4 1.3E+02 0.0045 23.5 8.8 77 178-254 51-134 (152)
177 3eg5_B Protein diaphanous homo 39.7 89 0.003 28.8 7.9 73 64-139 133-209 (383)
178 2km4_A Regulator of TY1 transp 38.2 1.3E+02 0.0046 23.0 9.7 103 97-209 10-115 (142)
179 3ebb_A Phospholipase A2-activa 36.8 2.2E+02 0.0076 25.1 10.1 98 63-160 160-263 (304)
180 3eiq_C Programmed cell death p 36.1 2.1E+02 0.0072 26.0 9.6 100 16-124 56-161 (358)
181 2f31_A Diaphanous protein homo 34.6 1.1E+02 0.0036 25.9 7.1 72 64-138 67-142 (233)
182 4fu3_A Regulation of nuclear P 31.6 1.6E+02 0.0056 22.0 9.0 82 15-102 7-89 (135)
183 3d9j_A RNA-binding protein 16; 30.9 1.8E+02 0.0062 22.4 10.1 79 128-208 39-118 (145)
184 3ebb_A Phospholipase A2-activa 30.2 2.9E+02 0.0098 24.4 10.2 114 130-250 146-263 (304)
185 2wx3_A MRNA-decapping enzyme 1 28.3 18 0.00063 22.2 0.8 42 4-45 3-44 (51)
186 3eg5_B Protein diaphanous homo 28.0 3.5E+02 0.012 24.7 10.6 60 145-211 134-193 (383)
187 1ug3_A EIF4GI, eukaryotic prot 26.2 3.5E+02 0.012 24.1 10.1 104 14-123 11-118 (339)
188 2bid_A Protein (BID); programm 26.0 2.5E+02 0.0087 22.4 7.3 63 105-167 80-145 (197)
189 1eyh_A Epsin; superhelix of he 25.3 1.2E+02 0.0041 23.5 5.2 51 114-164 23-76 (144)
190 4f52_E Glomulin; cullin-ring E 24.9 1.4E+02 0.0049 29.3 6.9 73 10-85 359-436 (596)
191 3ut4_A CTHE_2751, putative unc 24.5 2.3E+02 0.008 21.5 9.4 97 177-290 28-129 (134)
192 1t06_A Hypothetical protein; s 23.9 3.1E+02 0.01 23.0 8.1 73 130-212 107-183 (235)
193 2jak_A Serine/threonine-protei 23.8 4.3E+02 0.015 24.3 16.8 59 83-141 183-245 (392)
194 2ful_A EIF-5, eukaryotic trans 22.4 2.8E+02 0.0096 22.2 7.1 35 235-269 83-117 (177)
195 1inz_A EPS15-interacting porte 22.2 1.5E+02 0.0051 23.1 5.2 50 115-164 42-94 (148)
196 2iu1_A EIF5, eukaryotic transl 22.1 3.4E+02 0.011 22.4 8.6 89 224-318 67-155 (208)
197 3gae_A Protein DOA1; UFD3, CDC 22.0 2.7E+02 0.0091 23.8 7.4 99 62-160 101-217 (253)
198 4fu3_A Regulation of nuclear P 21.3 91 0.0031 23.6 3.9 58 99-162 13-70 (135)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=6.7e-49 Score=415.89 Aligned_cols=401 Identities=43% Similarity=0.784 Sum_probs=355.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc
Q 013663 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (438)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~ 84 (438)
|+|+|+++.++++.++|.+++|||++ +|++|+++|++++++|+++.+|.+++.+..+.++.+|++|+++|||.+.++|.
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCChhhHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999 99999999999999999999999999843478999999999999999999999
Q ss_pred cCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
.++++.+..||+.+++.+.++++.||+.++.+++.|++.++++.||++++.+.+.+.++++.+|++++.+|+.+++..+.
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999887
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~ 244 (438)
.+.++ .+...++.++|.+++++++++..||..|+++++.++...++.+.+.++.+++.++..++++++++|..++++
T Consensus 162 ~~~~~---~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSD---VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHHHC---SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred Hhchh---hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 65421 112457889999999999999999999999999888777766777788899999999999999999999999
Q ss_pred HHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhc
Q 013663 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (438)
Q Consensus 245 l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (438)
|..+++.+|+.+.+|++.++++++..+++.++++|..|+++|.++++.+...+.+++++..++|.++..+...++|..|+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999999999999999999999999999998755566688999999999999999888887766
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCC
Q 013663 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (438)
Q Consensus 325 ~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (438)
+.+.+ + +++|||....|++|++|..+|+.++..+|+.+++.++|++...+++++
T Consensus 319 ~~d~~----------------------e--d~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~-- 372 (852)
T 4fdd_A 319 KGDVE----------------------G--GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE-- 372 (852)
T ss_dssp HC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS--
T ss_pred cCCcc----------------------c--ccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC--
Confidence 42210 0 111111124799999999999999999999999999999999999888
Q ss_pred cchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 405 ~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
|+.|++|+.++|.+++++++.+.++++.+++
T Consensus 373 -~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp -HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999999999999888888777654
No 2
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=6.5e-41 Score=330.38 Aligned_cols=369 Identities=24% Similarity=0.367 Sum_probs=314.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh-----------
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA----------- 82 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~----------- 82 (438)
+|.++|.++++||++ +|++|+++|+++++ .|+|+..|.+++.+ .+.++.+|++|+++|||.+.++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 478899999999999 99999999999987 58999999999985 3568999999999999998654
Q ss_pred hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHH
Q 013663 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~ 159 (438)
|..++++.++.||+.+++.+.++++.+ ++++.+|+.|++.+++ ..||+++|.+++.++++ ++.+|.+++.+|+.++
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999999888888 9999999999999866 59999999999999988 8999999999999999
Q ss_pred hccccccccCCCCCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccchhhHHh-H-HHHHHHHHHhhCCCCH
Q 013663 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS-M-DQYLQGLFLLSNDPSA 235 (438)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~-~-~~ll~~l~~~~~~~~~ 235 (438)
+...... +..+.+.+++.+.+++.++ +..||..|+++++.++.+..+.+... + +.+++.+.....++++
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHSCGGG-------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhCCchh-------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 9873221 1356788999999999998 79999999999999887765332111 1 2356777777788889
Q ss_pred HHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccC-------------------CC
Q 013663 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (438)
Q Consensus 236 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~-------------------~~ 295 (438)
++|..++++|..++..+++.|.+|++ .++++++..+++.++++|..|+++|..+++.. ..
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 99999999999999999999999999 99999999999999999999999999998752 22
Q ss_pred hhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHH
Q 013663 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (438)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l 375 (438)
...+.++++.++|.+++.+...++ +++ ++.|++|.+|..+|
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~-----------------------------------d~~----~~~~~~r~~a~~~L 352 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------NDD----DDDWNPCKAAGVCL 352 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------SCC----TTCCSHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhccc-----------------------------------ccc----cccchHHHHHHHHH
Confidence 345667888999999888763210 001 12589999999999
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhccccccc
Q 013663 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEVIF 436 (438)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~ 436 (438)
+.++..+|+.+++.++|++...+++++ |+.|++++.+||++++|+. +.+.++++.+++
T Consensus 353 ~~l~~~~~~~~~~~~~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~ 411 (462)
T 1ibr_B 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411 (462)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999888 9999999999999999987 556677766653
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.6e-37 Score=326.67 Aligned_cols=373 Identities=21% Similarity=0.347 Sum_probs=317.8
Q ss_pred HHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhcC--CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh----------
Q 013663 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT---------- 81 (438)
Q Consensus 15 ~~l~~~l~~~-~s~d~~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~---------- 81 (438)
.++.++|..+ ++||++ +|++|+++|++++++ |+++..|.+++.+ .+.++++|++|+++|||.+.+
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 5789999999 999999 999999999999875 8999999999985 357899999999999999854
Q ss_pred -hhcc-CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccC-ChhhHhHHHHHHHH
Q 013663 82 -AYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (438)
Q Consensus 82 -~w~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~ 157 (438)
.|.. ++++.+..||+.+++.+.++++.+|++++.+++.|+..+++ +.||+++|.+.+.+.++ ++.+|.+++.+++.
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4676 99999999999999999999999999999999999999866 69999999999999988 89999999999999
Q ss_pred HHhccccccccCCCCCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccchhhHH--hHHHHHHHHHHhhCCC
Q 013663 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP 233 (438)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~--~~~~ll~~l~~~~~~~ 233 (438)
+++.++...+ .+..+.+.+++.+.+.+.++ +..||..|+++++.++.++...+.. ..+.+++.+...+.++
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHcCChhhh-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC
Confidence 9998764321 12356888999999999997 8999999999999998876543321 1235777788888888
Q ss_pred CHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCC---------------Chh
Q 013663 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (438)
Q Consensus 234 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~---------------~~~ 297 (438)
++++|..+++++..+++.+++.+.+|+. .++++++..+.+.++++|..|+++|..+++... ..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 9999999999999999999999999999 999999999999999999999999999987521 112
Q ss_pred hHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 013663 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (438)
Q Consensus 298 ~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~ 377 (438)
.+.+++..++|.++..+...++ +++| +.|++|.+|..+|+.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~-----------------------------------d~~d----~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNE-----------------------------------DPED----DDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----------------------------------C-CC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----------------------------------cccc----ccCcHHHHHHHHHHH
Confidence 4567788899999888863210 1011 248999999999999
Q ss_pred HHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhccccccc
Q 013663 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEVIF 436 (438)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~ 436 (438)
++..+|+.+++.+++++.+.+++++ |+.|++|+.++|.+++++. +.+.++++.+++
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred HHHHccHhHHHHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998887 9999999999999999986 667777766553
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=8.7e-38 Score=334.17 Aligned_cols=379 Identities=14% Similarity=0.206 Sum_probs=294.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc------cCC
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SMS 87 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~------~l~ 87 (438)
++++.++|.++++||++ +| |+++|++++++|+|+..|++++.+ .+.+.++|++|+++|||.|.++|. .++
T Consensus 4 ~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 4 LETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred HHHHHHHHHHhcCCCHH-HH--HHHHHHHhhcCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 57899999999999998 77 999999999999999999999984 467899999999999999999998 799
Q ss_pred HhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
++.+..||+.+++.+.++++.||+++|.+|+.|++.++++.||+++|.|++.++++++..+.+++.++.++++.....+.
T Consensus 80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999988779999999999999999998899999999999999988889999999999999997754322
Q ss_pred cC-CCCCCcchhhhHHHHH-------HHhccCCCH---------HHHHHHHHHHHHHHc-ccchhhHHhHHHHHHHHHHh
Q 013663 168 SD-VPGLAECPINIFLPRL-------LQFFQSPHT---------SLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLL 229 (438)
Q Consensus 168 ~~-~~~~~~~~~~~il~~l-------~~~l~~~~~---------~vr~~al~~l~~~~~-~~~~~~~~~~~~ll~~l~~~ 229 (438)
++ ...-+...+..+++.+ .+.++++.. +++..+++++..+.. ..|+.+..++..+++.+.+.
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 10 0000000122233322 233554321 233456777766542 34555555666666655554
Q ss_pred hCC-----------CC----HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhc-----CCChHHHhHHHHHHHHh
Q 013663 230 SND-----------PS----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSY 289 (438)
Q Consensus 230 ~~~-----------~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~-----~~~~~v~~~a~~~~~~~ 289 (438)
+.. .+ +.+|+.+++++..+++.+++.|.+|++.+++++++.+. ..++.++..|++||.++
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 321 11 36789999999999999999999999999999988764 45789999999999999
Q ss_pred hccCCChhhHH--hhHHHHH-HHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchh
Q 013663 290 FEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (438)
Q Consensus 290 ~~~~~~~~~~~--~~l~~l~-~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~ 366 (438)
++.+...+.++ +++..++ +.++++|..+++|++.|++ ||++|++ ++.+ + .+.++
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~-------dp~e~i~-----------~d~e--~---~d~~s 376 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED-------DPIEYIR-----------RDLE--G---SDTDT 376 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT-------CHHHHHH-----------HHHH--C-------C
T ss_pred hCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc-------CHHHHHH-----------hccC--c---ccccC
Confidence 87643344554 8999999 7899999988888877753 3333432 1111 1 23479
Q ss_pred hhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhc------cCCCCcchhhHHHHHHHHHHhhc
Q 013663 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~w~~r~aal~~l~~l~~~ 422 (438)
+|.+|..+|+.++..+|+.+++.+++++.+.++ +++ |+.|+||++++|+++++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~ 435 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAIN 435 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBS
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887 455 99999999999999975
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.9e-35 Score=312.66 Aligned_cols=368 Identities=24% Similarity=0.366 Sum_probs=311.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC--CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-----------Hhh
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i-----------~~~ 82 (438)
++.++|..+++||++ +|++|+.+|+++..+ |+++..|++++.+ .+.++.+|++|+++||+.+ .++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 478899999999999 999999999999875 8999999999985 3568999999999999987 467
Q ss_pred hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHH
Q 013663 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~ 159 (438)
|..++++.+..||+.+++.+.++++.+ +.++.+++.|++.+++ ..||+++|.+.+.+.++ ++.+|.+++.+++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999887778 9999999999998865 89999999999999998 8999999999999999
Q ss_pred hccccccccCCCCCCcchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccchhhHHh--HHHHHHHHHHhhCCCCH
Q 013663 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSA 235 (438)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~--~~~ll~~l~~~~~~~~~ 235 (438)
+.+.... +..+.+.+++.+.+.+.++ +..+|..|+++++.++.+++..+... .+.+++.+...+.++++
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhcCHhh-------HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 8874321 1246788999999999887 78999999999999988765433211 12467777777888889
Q ss_pred HHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccC-------------------CC
Q 013663 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (438)
Q Consensus 236 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~-------------------~~ 295 (438)
++|..+++++..++..+++.+.+++. .+++.++..+.+.++++|..|+++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 99999999999999999999999999 99999999998889999999999999998641 11
Q ss_pred hhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHH
Q 013663 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (438)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l 375 (438)
....++++..++|.+++.+...++ + +| +++|++|.+|..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-----------------------------------d-~~---~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-DD---DDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-CC---TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccc-----------------------------------c-cc---ccccHHHHHHHHHH
Confidence 233455678888888887753210 0 11 12589999999999
Q ss_pred HHHHhhhchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch-hhhhhcccccc
Q 013663 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEVI 435 (438)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~-~~~~~~l~~i~ 435 (438)
+.++..+|+.+++.++|++...+++++ |+.|++++.++|.+++++. +.+.++++.++
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l 410 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 410 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHCcHhhHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999998888 9999999999999999987 55666666554
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=6.9e-34 Score=306.48 Aligned_cols=396 Identities=14% Similarity=0.212 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~ 90 (438)
|..++++.++|..+++|+++ .|++|+++|++++++|++|..+.+++.+ +.++.+|++|+++||+.|+++|..++++.
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cccHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 45678999999999999998 9999999999999999999999999976 77999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcC---------cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 91 QQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~---------~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
+..||+.+++.+.+. ++.||++++.+++.|++.++++.||++++.+++.++ +++..+..++.+|..++++
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 999999999998642 378999999999999999999999999999999986 5667789999999999988
Q ss_pred cccccccCCC--------CCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhH------H---------
Q 013663 162 IPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALF------V--------- 217 (438)
Q Consensus 162 ~~~~~~~~~~--------~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~------~--------- 217 (438)
+...-..+.. ..+..+++.+++.+.+++.+ ++..++..+++|+.+++.|++-.+. +
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCC
Confidence 7642110000 01112345566666666654 4577889999999888887762110 0
Q ss_pred ----------------------------hH----HHHHHHHHH-h-------------hCCCCHHHHHHHHHHHHHHHhh
Q 013663 218 ----------------------------SM----DQYLQGLFL-L-------------SNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 218 ----------------------------~~----~~ll~~l~~-~-------------~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
.+ +.+++.+.. + ..+.+.++....++.+..+++.
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 327 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 00 011111100 0 0122334445566666655544
Q ss_pred Cccc------ccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc----cCCChhhHHhhHHHHHHHHHhccCcChhhh
Q 013663 252 RPSF------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (438)
Q Consensus 252 ~~~~------~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~----~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (438)
+... +.+++..++++++.+....+++++..|++||.++++ .+...+...+++..+++.++..|..++ |.
T Consensus 328 ~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d~ 406 (1049)
T 3m1i_C 328 NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-EV 406 (1049)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-TC
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc-ce
Confidence 3222 355677788888888887899999999999999998 445566778999999999999998754 33
Q ss_pred hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccC
Q 013663 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS 401 (438)
Q Consensus 322 ~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 401 (438)
+ |.++ |+.+++| + +.+|+ +.|+.|+++.++|..++...|..+++.+.+.+.+.++++
T Consensus 407 ~-~~~d------d~~e~~r-----------~--~~~d~---d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 407 L-VVEN------DEGEIVR-----------E--FVKES---DTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp C-EEEC------TTSCEEE-----------C--SSCCH---HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSS
T ss_pred e-eeeC------CCCcchH-----------h--hhccc---hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCC
Confidence 3 3211 1122222 1 11122 247889999999999998888899999999999988642
Q ss_pred CCCcchhhHHHHHHHHHHhhcchhhhh-hcccccc
Q 013663 402 GDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEVI 435 (438)
Q Consensus 402 ~~~~w~~r~aal~~l~~l~~~~~~~~~-~~l~~i~ 435 (438)
..+|+.|+|+++++|++++++.+... +++|+++
T Consensus 464 -~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~ 497 (1049)
T 3m1i_C 464 -EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVI 497 (1049)
T ss_dssp -SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHH
Confidence 12399999999999999998875533 3455554
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.2e-32 Score=293.25 Aligned_cols=385 Identities=15% Similarity=0.193 Sum_probs=287.5
Q ss_pred HHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 13 GFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 13 ~~~~l~~~l~~-~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
.++++.++|.. ..++|++ .|++|+++|++++++|++|..+..++.. +.++.+|++|+++||+.|+++|..++++.+
T Consensus 22 ~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~ 98 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQY 98 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGGH
T ss_pred hHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHHHH
Confidence 46788888988 4467888 9999999999999999999999999874 789999999999999999999999999999
Q ss_pred HHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-----CChhhHhHHHHHHHHHHhccc
Q 013663 92 QYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 92 ~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-----~~~~~r~~al~~l~~l~~~~~ 163 (438)
..||+.+++.+.+ .++.||++++.+++.|++.+++..||++++.+.+.+++ +++..+..++.+|..+++++.
T Consensus 99 ~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 99 ESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 9999999999875 37999999999999999999988999999999999876 356788999999999998763
Q ss_pred cc-cc----cCCCCCCcchhhhHHHHHHHhccCCC--HHHHHHHHHHHHHHHc---------------------------
Q 013663 164 QV-LD----SDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFIM--------------------------- 209 (438)
Q Consensus 164 ~~-~~----~~~~~~~~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~~~~~--------------------------- 209 (438)
.. .. ...+..+....+.+++.+.+.+.+.+ ..++..+++|+..|+.
T Consensus 179 ~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 258 (963)
T 2x19_B 179 TSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDS 258 (963)
T ss_dssp TCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHH
Confidence 32 10 01112233456667777777665542 2366667777765543
Q ss_pred ----------cc-chhhHHhHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHHHhhCccccc------ccHHHHHH
Q 013663 210 ----------LM-PSALFVSMDQYLQGLFLL-------SNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRNLFE 265 (438)
Q Consensus 210 ----------~~-~~~~~~~~~~ll~~l~~~-------~~~~~~~~~~~a~~~l~~l~~~~~~~~~------~~~~~li~ 265 (438)
.. +..+.+.+..+++.++.. ..+.+.+.....++.+..+++.++..+. +++..+++
T Consensus 259 a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 338 (963)
T 2x19_B 259 SVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVN 338 (963)
T ss_dssp HHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHH
Confidence 10 001112222233322221 2334566777888999988887666554 56677888
Q ss_pred HHhhhhcC-----CChHHHhHHHHHHHHhhcc-C--------CChhhHHhhHHHHHHHHHhccCcChhhh-hhccccccC
Q 013663 266 YMLQVNKD-----TDDDVALEACEFWHSYFEA-Q--------LPHENLKEFLPRLVPVLLSNMIYADDDE-SLVEAEEDE 330 (438)
Q Consensus 266 ~~~~~~~~-----~~~~v~~~a~~~~~~~~~~-~--------~~~~~~~~~l~~l~~~l~~~l~~~~~d~-~~~~~~~~~ 330 (438)
+++.+..+ .+++++..+++||.++++. . ...+.+.+++..+++.++..+..++++. +.|+
T Consensus 339 ~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~----- 413 (963)
T 2x19_B 339 MIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWS----- 413 (963)
T ss_dssp HHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSC-----
T ss_pred HHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCC-----
Confidence 88887764 4778999999999999873 1 1234567899999999998887544331 1111
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHh----ccCCCCcc
Q 013663 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASGDEAW 406 (438)
Q Consensus 331 ~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~w 406 (438)
+|+ .+...+.|+++.++|..++..+|+.+++.+++++.+.+ ++.+ |
T Consensus 414 --------------------------~de-~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~---w 463 (963)
T 2x19_B 414 --------------------------SDE-KEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS---W 463 (963)
T ss_dssp --------------------------HHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC---H
T ss_pred --------------------------hhH-HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCc---h
Confidence 111 11234679999999999999999999999999999888 4445 9
Q ss_pred hhhHHHHHHHHHHhhcchhhhhhcccccc
Q 013663 407 KDREAAVLALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
+.|+|+++++|++++++.+...++++.++
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~~~l~~l~ 492 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYSDVVPGLI 492 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHH
Confidence 99999999999999999876666666554
No 8
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-33 Score=298.09 Aligned_cols=385 Identities=12% Similarity=0.179 Sum_probs=272.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
.++++.++|..+++||++ .|++|+++|++++++|++|.++.++|.. +.++.+|++|+++||++|+++|..++++.+.
T Consensus 5 d~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp ------CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred hHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 356788889888999999 9999999999999999999999999975 7899999999999999999999999999999
Q ss_pred HHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC------ChhhHhHHHHHHHHHHhccc
Q 013663 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~------~~~~r~~al~~l~~l~~~~~ 163 (438)
.||+.+++.+.+ .++.||++++.+++.|++++++ .||++++.+.+.++++ ++..+..++.+|..+++++.
T Consensus 82 ~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 82 ELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999999999864 3689999999999999999988 9999999999999875 57789999999999998754
Q ss_pred cccccCCC-----CCCcchhhhHHHHHHHhccCC-C-------HHHHHHHHHHHHHHHc--ccchh----hH--------
Q 013663 164 QVLDSDVP-----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA----LF-------- 216 (438)
Q Consensus 164 ~~~~~~~~-----~~~~~~~~~il~~l~~~l~~~-~-------~~vr~~al~~l~~~~~--~~~~~----~~-------- 216 (438)
.. +...+ ..+....+.+++.+.+.+.+. + ..++..+++|+..|+. ++|.. +.
T Consensus 161 ~~-~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~ 239 (971)
T 2x1g_F 161 VI-HTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVH 239 (971)
T ss_dssp HC-CCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhh
Confidence 22 11000 011223456666666665432 1 2788999999988777 34311 00
Q ss_pred ------------------------------------------HhHHHHHHHHHH-------hhCCCC---HHHHHHHHHH
Q 013663 217 ------------------------------------------VSMDQYLQGLFL-------LSNDPS---AEVRKLVCAA 244 (438)
Q Consensus 217 ------------------------------------------~~~~~ll~~l~~-------~~~~~~---~~~~~~a~~~ 244 (438)
+.+..+++.+.. ...+.+ ++.....++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 240 KCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp HHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred hhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHH
Confidence 111122222222 113334 3677788899
Q ss_pred HHHHHhhCccccc-----------ccHHHHHHHHhhhhcC-----CChHHHhHHHHHHHHhhcc----------CCChhh
Q 013663 245 FNLLIEVRPSFLE-----------PHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA----------QLPHEN 298 (438)
Q Consensus 245 l~~l~~~~~~~~~-----------~~~~~li~~~~~~~~~-----~~~~v~~~a~~~~~~~~~~----------~~~~~~ 298 (438)
+..+++.++..+. +++..+++.++.++.. .+++++..+++||.++++. +.....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 399 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEY 399 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 9988877766554 4666788888876543 5789999999999998762 112245
Q ss_pred HHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 013663 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (438)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l 378 (438)
+.+++..+++.++..+..++++ + ++ + + +++|.++..++|+++.+++..+
T Consensus 400 ~~~~~~~ll~~l~~~~~~p~~~-~-~~---------------------------~-~-d~~e~~~f~~~R~~~~~~l~~~ 448 (971)
T 2x1g_F 400 IKPLYAHLTRILVRKSEQPDEK-S-LA---------------------------K-W-SSDDLECFRCYRQDISDTFMYC 448 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTT-T-TS---------------------------C-S-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcc-c-cc---------------------------c-c-CHhHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999888653321 1 10 0 0 1111123458899999999999
Q ss_pred HhhhchhhHHhHHHHHHHHhcc-----CCCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 379 SNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~-----~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
+..+|+.+++.+++++.+.+++ ++ |+.|+|+++++|+++++|.+...+++|.+++
T Consensus 449 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~ 508 (971)
T 2x1g_F 449 YDVLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR 508 (971)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 9999999999999999988865 45 9999999999999999999777777776653
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.97 E-value=5.2e-29 Score=263.65 Aligned_cols=395 Identities=15% Similarity=0.226 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
-.++++.+++..+++|+++ .|++|+++|++++++|++|..+..+|.. +.++.+|++|+++||++|+++|..++++.+
T Consensus 13 ~dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~ 89 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred CCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 3568899999999999988 9999999999999999999999999975 778999999999999999999999999999
Q ss_pred HHHHHHhhhhhhc----C-----cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 92 QYIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 92 ~~i~~~ll~~l~~----~-----~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
..||+.+++.+.. + .+.+++++|.+++.|++.+++..||++++.+++.+++ ++..+..++.+|..+.+++
T Consensus 90 ~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV 168 (1023)
T 4hat_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEV 168 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999998853 2 4788999999999999999999999999999999865 4567889999999999987
Q ss_pred ccccccCCC--------CCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchh-------------------
Q 013663 163 PQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA------------------- 214 (438)
Q Consensus 163 ~~~~~~~~~--------~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~------------------- 214 (438)
...-+.+.. ..+....+.++..+.+.+.+ .++.+...+++|+++++.|+|-.
T Consensus 169 ~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~ 248 (1023)
T 4hat_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSP 248 (1023)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCH
Confidence 542111100 00112234444444444432 34555566666666666665411
Q ss_pred ------------------------hHHhH----HHHHHHH-HHh-------------hCCCCHHHHHHHHHHHHHHHhhC
Q 013663 215 ------------------------LFVSM----DQYLQGL-FLL-------------SNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 215 ------------------------~~~~~----~~ll~~l-~~~-------------~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
+...+ ..+++.+ ..+ ..+.|.+.....++.++.+.+.+
T Consensus 249 ~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~ 328 (1023)
T 4hat_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN 328 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 11111 1111111 000 01223455666777788888776
Q ss_pred ccccc--ccHHHHH----HHHhhhhcCCChHHHhHHHHHHHHhhcc----CCChhhHHhhHHHHHHHHHhccCcChhhhh
Q 013663 253 PSFLE--PHLRNLF----EYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (438)
Q Consensus 253 ~~~~~--~~~~~li----~~~~~~~~~~~~~v~~~a~~~~~~~~~~----~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 322 (438)
...+. +....++ .+++.+....+.++...+++||..+++. +.......+++.++++++++.+..+++..
T Consensus 329 ~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~- 407 (1023)
T 4hat_C 329 RALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL- 407 (1023)
T ss_dssp GGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-
T ss_pred HHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-
Confidence 66554 3333443 4666666777899999999999999874 11234578999999999999999876432
Q ss_pred hccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccch-hhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccC
Q 013663 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS 401 (438)
Q Consensus 323 ~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 401 (438)
.++++++ .|. + +...|.|....| ..| ++|..++...|+.+++.+++.+.+.+.++
T Consensus 408 ive~d~~-----------------~~~--~-e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~~ 463 (1023)
T 4hat_C 408 VVENDEG-----------------EIV--R-EFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1023)
T ss_dssp EEECTTS-----------------CEE--E-CSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSST
T ss_pred cCCCCCc-----------------cHH--H-HhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhcCC
Confidence 1111100 000 0 000111111123 444 89999998889999999999998887653
Q ss_pred CCCcchhhHHHHHHHHHHhhcchhh-hhhccccccc
Q 013663 402 GDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEVIF 436 (438)
Q Consensus 402 ~~~~w~~r~aal~~l~~l~~~~~~~-~~~~l~~i~~ 436 (438)
+ .+|+.|+|++++||+|++|+.+. ..+++|++++
T Consensus 464 ~-~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~ 498 (1023)
T 4hat_C 464 E-WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1023)
T ss_dssp T-CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 1 23999999999999999998754 6677777654
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.97 E-value=5.9e-29 Score=263.10 Aligned_cols=382 Identities=14% Similarity=0.200 Sum_probs=273.0
Q ss_pred HHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh-
Q 013663 13 GFNEICRLLEQQISPS--STADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS- 89 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d--~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~- 89 (438)
..+++.+++..+++|+ ++ .|++|+++|++++++|++|..+..++.+....++.+|++|+.+|+++|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~ 78 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPI-IKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNES 78 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTT
T ss_pred CHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhh
Confidence 4689999998888884 56 9999999999999999999999999975212389999999999999999 68999
Q ss_pred ---hHHHHHHHhhhhhhc-----CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCCh-hhHhHHHHHHHHHHh
Q 013663 90 ---NQQYIKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (438)
Q Consensus 90 ---~~~~i~~~ll~~l~~-----~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~-~~r~~al~~l~~l~~ 160 (438)
.+..||+.+++.+.. .++.||+++|.+++.|++.+++..||++++.+++.+++++. ......+.+|..+.+
T Consensus 79 ~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 79 NLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 999999999999863 47899999999999999999999999999999999987544 344556677777777
Q ss_pred cccccc--ccC--------CCCCCc-chhhhHHHHHHHhcc----CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHH
Q 013663 161 DIPQVL--DSD--------VPGLAE-CPINIFLPRLLQFFQ----SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 161 ~~~~~~--~~~--------~~~~~~-~~~~~il~~l~~~l~----~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~ 225 (438)
++.... ... .+..+. ..++.+++.+++.+. ..++.++..+++|+++|+.|+|-.+... ..+++.
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~ 237 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNL 237 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHH
Confidence 765421 000 000010 113334555554443 3688899999999999999987443322 355565
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCcc---------------------------------------------------
Q 013663 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPS--------------------------------------------------- 254 (438)
Q Consensus 226 l~~~~~~~~~~~~~~a~~~l~~l~~~~~~--------------------------------------------------- 254 (438)
+++.+.+ +++|..|++||..++....+
T Consensus 238 l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~ 315 (980)
T 3ibv_A 238 LYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDP 315 (980)
T ss_dssp HHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 6555543 45555555555555432210
Q ss_pred ---------cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc----CC---ChhhHHhhHHHHHHHHHhccCcCh
Q 013663 255 ---------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QL---PHENLKEFLPRLVPVLLSNMIYAD 318 (438)
Q Consensus 255 ---------~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~----~~---~~~~~~~~l~~l~~~l~~~l~~~~ 318 (438)
...+++..++++++.++.+++++|...+++||..+.+. +. ......+++..+++.+++.+++++
T Consensus 316 ~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~ 395 (980)
T 3ibv_A 316 SELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE 395 (980)
T ss_dssp C--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 01144557788888888889999999999999998764 11 235568999999999999999865
Q ss_pred hhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHH----hHHHHH
Q 013663 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP----TLMPVI 394 (438)
Q Consensus 319 ~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~~l 394 (438)
++ .|+. ++++||+ +..-.+|+....+++.++...++.+++ .+.+.+
T Consensus 396 d~--~~~~--------------------------~~d~ed~--~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 396 SQ--EWDD--------------------------DPDSEEE--AEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp TC--CCCC--------------------------CSSSSTH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cc--cccc--------------------------ccchhHH--HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 42 1210 0011222 223468888886666666555667788 666667
Q ss_pred HHHhc---cCCCCcchhhHHHHHHHHHHhhcchhhh------hhcccccc
Q 013663 395 QAKLS---ASGDEAWKDREAAVLALGAIAEGCIKGL------YPHLSEVI 435 (438)
Q Consensus 395 ~~~l~---~~~~~~w~~r~aal~~l~~l~~~~~~~~------~~~l~~i~ 435 (438)
.+.+. +.+ |+.+||+++++++++|||.... .+++|.++
T Consensus 446 ~~~l~~~~~~~---W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 446 STAATLSPENS---WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHTTSCHHHH---HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHhcccCCCC---HHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 66663 344 9999999999999999987522 24566554
No 11
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=257.33 Aligned_cols=387 Identities=13% Similarity=0.167 Sum_probs=274.6
Q ss_pred CHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC
Q 013663 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (438)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~ 87 (438)
.++.++++.++|..+++| |++ .|++|+++|++++++|+++..+..+|. +.+.++.+|++|+++||+.|+++|..++
T Consensus 6 ~~~~~~~l~~~l~~~~~p~~~~~-~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 6 VNALCEQLVKAVTVMMDPNSTQR-YRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 367889999999999998 445 799999999999999988887888886 3488999999999999999999999999
Q ss_pred HhhHHHHHHHhhhhhhc-------CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHh
Q 013663 88 PSNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (438)
Q Consensus 88 ~~~~~~i~~~ll~~l~~-------~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~ 160 (438)
++.+..||+.+++.+.+ .++.||++++.+++.|++.++++.||++++.+++.+++ ++.+++.++.+|..+++
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999863 46999999999999999999999999999999998876 56789999999999999
Q ss_pred ccccccc--cC----CCCCCcchhhhHHHHHHHhccC-------------------CCHHHHHHHHHHHHHHHcccchhh
Q 013663 161 DIPQVLD--SD----VPGLAECPINIFLPRLLQFFQS-------------------PHTSLRKLSLGSVNQFIMLMPSAL 215 (438)
Q Consensus 161 ~~~~~~~--~~----~~~~~~~~~~~il~~l~~~l~~-------------------~~~~vr~~al~~l~~~~~~~~~~~ 215 (438)
++...-. .. .+..+...++.+++.+.+.+.+ ++..++..+++|+.+++.|++-.+
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 8654200 00 0000112234566666555543 234577888999988888776322
Q ss_pred H-HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc-----------------------------------------
Q 013663 216 F-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP----------------------------------------- 253 (438)
Q Consensus 216 ~-~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~----------------------------------------- 253 (438)
. ..-..+++.++..+.+ +++|..|++||..++..+.
T Consensus 243 i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 1 1001233333333321 2334444444444433221
Q ss_pred --------------c--------cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCC--ChhhHHhhHHHHHHH
Q 013663 254 --------------S--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPV 309 (438)
Q Consensus 254 --------------~--------~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~--~~~~~~~~l~~l~~~ 309 (438)
. ...+++..++++++.++.+.+.++...+++||..+.+... ....+.+++++++++
T Consensus 321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 0 1223455677777777778889999999999999887632 224467899999999
Q ss_pred H---HhccCcChhhh---hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhc
Q 013663 310 L---LSNMIYADDDE---SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (438)
Q Consensus 310 l---~~~l~~~~~d~---~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~ 383 (438)
+ +..+.+++++. ..|..+ |.++++|+....+++|+...+++..++...+
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~-------------------------D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRF-------------------------DFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHH-------------------------HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhcCccccCCcchhhhhc-------------------------ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8 77777654321 112100 0011112123467999999999999999999
Q ss_pred hhhHHhHHHHHHHHhcc----------------------CCCCcchhhHHHHHHHHHHhhcchhh
Q 013663 384 DEILPTLMPVIQAKLSA----------------------SGDEAWKDREAAVLALGAIAEGCIKG 426 (438)
Q Consensus 384 ~~~~~~l~~~l~~~l~~----------------------~~~~~w~~r~aal~~l~~l~~~~~~~ 426 (438)
...++.+.+.+.+.+.+ ..+..|...+|..+.+.++++++.+.
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~ 520 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRT 520 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98888888877655432 11234888999999999999998543
No 12
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.95 E-value=4e-26 Score=240.50 Aligned_cols=393 Identities=14% Similarity=0.187 Sum_probs=275.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
-.++.+.+++..+++|+++ .|++|+++|++++++|+.|..+..+|.. +.++.+|++|+.+|++.|+++|..++++.+
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~-~r~qA~~~L~q~q~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~ 101 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGA-QQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQC 101 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHH-HHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred CCHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHH
Confidence 3578999999999999988 9999999999999999999988888865 789999999999999999999999999999
Q ss_pred HHHHHHhhhhhhc---------CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 92 QYIKSELLPCLGA---------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 92 ~~i~~~ll~~l~~---------~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
..||+.+++.+.. .++.+++++|.+++.|++.++|..||++++.+++.+++ ++..+..++.+|..+.+++
T Consensus 102 ~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV 180 (1073)
T 3gjx_A 102 EGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEV 180 (1073)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999999852 24788899999999999999999999999999998865 4678889999999999986
Q ss_pred ccccccCC--------CCCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHH-HHhhCC
Q 013663 163 PQVLDSDV--------PGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL-FLLSND 232 (438)
Q Consensus 163 ~~~~~~~~--------~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l-~~~~~~ 232 (438)
...-+.+. +..+....+.+++.+.+.+.+ .++.+...++++++.++.|++-.+.-. ..+++.+ +..+.
T Consensus 181 ~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~- 258 (1073)
T 3gjx_A 181 FDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN- 258 (1073)
T ss_dssp TTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS-
T ss_pred HhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC-
Confidence 54210000 011122345566666666643 578888899999999999987332111 2355555 45553
Q ss_pred CCHHHHHHHHHHHHHHHhhCcc----cc----------------------------------------------------
Q 013663 233 PSAEVRKLVCAAFNLLIEVRPS----FL---------------------------------------------------- 256 (438)
Q Consensus 233 ~~~~~~~~a~~~l~~l~~~~~~----~~---------------------------------------------------- 256 (438)
++++|..|++||..++....+ .+
T Consensus 259 -~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~ 337 (1073)
T 3gjx_A 259 -VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQ 337 (1073)
T ss_dssp -SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777653110 00
Q ss_pred --------cccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc---CC--------------------ChhhHHhhHHH
Q 013663 257 --------EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QL--------------------PHENLKEFLPR 305 (438)
Q Consensus 257 --------~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~---~~--------------------~~~~~~~~l~~ 305 (438)
.+.+...+.+++.+....+.++.+.+++||..+.+. +. ......+++.+
T Consensus 338 lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~ 417 (1073)
T 3gjx_A 338 LLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSK 417 (1073)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHH
T ss_pred HHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHH
Confidence 001111222233444556889999999999998654 10 01225778888
Q ss_pred HHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchh
Q 013663 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (438)
Q Consensus 306 l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (438)
+..+++..|..++|.. ..+ +|.+ +.+| + .-.| .+.-+.++...++|..++...++.
T Consensus 418 L~~vlI~~m~~P~ev~-i~e-~e~g------e~~r------e-------~~~d---~~~~~ly~~mrd~L~~lt~l~~~~ 473 (1073)
T 3gjx_A 418 VRLLMVSRMAKPEEVL-VVE-NDQG------EVVR------E-------FMKD---TDSINLYKNMRETLVYLTHLDYVD 473 (1073)
T ss_dssp HHHHHHHTCCCSCCEE-EEE-CSSS------CEEE------E-------ECSS---CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhcCCCcccc-ccC-cccc------hHHH------H-------HHhh---cchHHHHHHHHHHHHHHhcCCHHH
Confidence 8999999988765321 111 1110 0110 0 0001 112355667778888877666778
Q ss_pred hHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhh-hhhccccccc
Q 013663 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEVIF 436 (438)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~-~~~~l~~i~~ 436 (438)
++..+++.+...+++. .-+|+.++|+++++|+|+.+..+. -.++||++++
T Consensus 474 ~~~i~~~~l~~~~~~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~ 524 (1073)
T 3gjx_A 474 TEIIMTKKLQNQVNGT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 524 (1073)
T ss_dssp HHHHHHHHHHHHHTSC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHH
Confidence 8888999888776543 223999999999999999655543 4577777764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.95 E-value=9.6e-26 Score=247.49 Aligned_cols=385 Identities=16% Similarity=0.190 Sum_probs=281.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC----------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~ 84 (438)
.++.++|..+.|||++ +|++|...|.+..+.+ ..+..+...+. +.++.+|..|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHhcCCCCHh-HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH----
Confidence 4678889999999999 9999999998765432 23344545553 6789999999999988764
Q ss_pred cCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC---------chHHHHHHHHHHhc-cCChhhHhHHHHH
Q 013663 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~---------~w~~ll~~l~~~l~-~~~~~~r~~al~~ 154 (438)
.++++....+++.+++.+.++++.+|..++.+++.++...++. .|++++|.++..+. ++++.+|.+|+.+
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 4577788899999999999988899999999999999876554 59999999999998 4788999999999
Q ss_pred HHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHH-hHHHHHHHHHHhhCCC
Q 013663 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV-SMDQYLQGLFLLSNDP 233 (438)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~ 233 (438)
+..+++..+..+. .+.+.+++.+++.+.+++..||..|+++++.++...++.+.+ .++.+++.+.. +.
T Consensus 158 l~~~~~~~~~~l~--------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLLV--------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---ND 226 (1230)
T ss_dssp HHHHHHHTCSSCT--------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TC
T ss_pred HHHHHHHhHhHHH--------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc---CC
Confidence 9999988776443 467999999999999999999999999999999887654422 24444444433 22
Q ss_pred CHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhc
Q 013663 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (438)
Q Consensus 234 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 313 (438)
++.+|..+++++..++...++.|.+|++.+++.++..+.+.++++|..+++.+..+++. ..+.+.++++.++|.+++.
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--ChHHHHHhHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999988999999999999998875 4455688999999999998
Q ss_pred cCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCC----CccccccchhhhhhHHHHHHHHHhhhch-----
Q 013663 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED----DDDDIVNVWNLRKCSAAALDVLSNVFGD----- 384 (438)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~----~d~~~~~~~~~r~~a~~~l~~l~~~~~~----- 384 (438)
+...+.. ..+++ ++...+.+.. .+.+++++ ..++.+..|.+|.+|..+++.++...|+
T Consensus 305 l~~d~~~--~~~~d-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDE-DEDENAMDAD----------GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred hCCCCCC--CCccc-cccccccccc----------ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8753321 00000 0000000000 00000000 0001123578888888888877765442
Q ss_pred ----------------------------------------------------------hhHHhHHHHHHHHhccCCCCcc
Q 013663 385 ----------------------------------------------------------EILPTLMPVIQAKLSASGDEAW 406 (438)
Q Consensus 385 ----------------------------------------------------------~~~~~l~~~l~~~l~~~~~~~w 406 (438)
.++|.++|.+...+++++ |
T Consensus 372 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~---~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS---V 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC---H
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC---H
Confidence 133445555555577777 9
Q ss_pred hhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 407 KDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
+.|.+++.+++.+++++++.+.+|++.+++
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 999999999999999988777777766653
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=5.7e-20 Score=194.45 Aligned_cols=365 Identities=15% Similarity=0.088 Sum_probs=284.2
Q ss_pred CCCCC-HHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhc------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Q 013663 6 AWQPQ-EQGFNEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQ------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKN 77 (438)
Q Consensus 6 ~~~~~-~~~~~~l~~~l~~~-~s~d~~~~r~~A~~~L~~~~~------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~ 77 (438)
.|... +...+.+.+.+-.. .+++.. +|+++...+..+.. .|+....+...+. +.++.+|..|...|..
T Consensus 79 ~w~~~~~~~~~~ik~~ll~~l~~~~~~-vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~---~~~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 79 HFQNFPNGVTDFIKSECLNNIGDSSPL-IRATVGILITTIASKGELQNWPDLLPKLCSLLD---SEDYNTCEGAFGALQK 154 (852)
T ss_dssp SGGGCCHHHHHHHHHHHHTTTTCSSHH-HHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS---CSSHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 46543 33445566555444 455556 99999999887642 4666676777665 5678999999999988
Q ss_pred HHHhhhccCC----HhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHhccCChhhHhH
Q 013663 78 NLRTAYKSMS----PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEG 150 (438)
Q Consensus 78 ~i~~~w~~l~----~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~l~~~l~~~~~~~r~~ 150 (438)
.....-..+. ......+...+++.+.++++.||..++.+++.++...+ ...++++++.+++.+.++++.+|..
T Consensus 155 i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~ 234 (852)
T 4fdd_A 155 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234 (852)
T ss_dssp HHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 7765311111 12256677788888899999999999999988775432 2456889999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc--chhhHHhHHHHHHHHHH
Q 013663 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--PSALFVSMDQYLQGLFL 228 (438)
Q Consensus 151 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~--~~~~~~~~~~ll~~l~~ 228 (438)
++.+|..+++..+..+. .++..+++.+.+.+.+.+..||..|++++..+.+.. .+.+.+++..+++.++.
T Consensus 235 a~~~L~~l~~~~~~~~~--------~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~ 306 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLL--------PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306 (852)
T ss_dssp HHHHHHHHHHHCHHHHG--------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHH--------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999998887653 467889999999999999999999999999887642 12234566677777776
Q ss_pred hh-----------CC-----------CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHH
Q 013663 229 LS-----------ND-----------PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (438)
Q Consensus 229 ~~-----------~~-----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~ 286 (438)
.+ .| .++.+|+.+..++..++...++. .++.+++++...+.+.+..+|..|+..+
T Consensus 307 ~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp HTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 65 33 23457999999999999877653 4678889988888888999999999999
Q ss_pred HHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchh
Q 013663 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (438)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~ 366 (438)
+.+++. ..+.+.++++.++|.++..+.. .+..
T Consensus 384 g~i~~~--~~~~~~~~l~~~l~~l~~~l~d----------------------------------------------~~~~ 415 (852)
T 4fdd_A 384 GAIAEG--CMQGMIPYLPELIPHLIQCLSD----------------------------------------------KKAL 415 (852)
T ss_dssp HHTTTT--THHHHGGGHHHHHHHHHHHTTC----------------------------------------------SSHH
T ss_pred HHHHhc--chHHHHHHHHHHHHHHHHHcCC----------------------------------------------CCHH
Confidence 999986 4456678999999999887741 1367
Q ss_pred hhhhHHHHHHHHHhhhch----hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 367 LRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
+|.+|..+++.++..++. .+++.+++.+...+.+++ +..|.+|+.+++.+++++++.+.+|+|.|++
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~---~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~ 486 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN---KRVQEAACSAFATLEEEACTELVPYLAYILD 486 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHH
Confidence 899999999999998764 567888888888888877 9999999999999999999889999998874
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.86 E-value=9.8e-20 Score=184.49 Aligned_cols=329 Identities=15% Similarity=0.111 Sum_probs=239.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHh
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTCL 140 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~-~w~~ll~~l~~~l 140 (438)
+.+..+|..|+.++.... ..+++..+..+.+.+.+.+.++++.||..++.+++.++...+.. .++.++|.+...+
T Consensus 137 ~~~~~~R~~a~~~l~~~~----~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 212 (588)
T 1b3u_A 137 GDWFTSRTSACGLFSVCY----PRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA 212 (588)
T ss_dssp CSSHHHHHHHGGGHHHHT----TTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHh
Confidence 345555655555544432 23455566677777777788899999999999999999876543 3578999999999
Q ss_pred ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH
Q 013663 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (438)
Q Consensus 141 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (438)
.++++.+|..|+.+++.+++.++.. ...+.++|.+.+.+.|+++.||..|+++++.+....+... ..+
T Consensus 213 ~d~~~~vr~~a~~~l~~l~~~~~~~----------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~ 280 (588)
T 1b3u_A 213 SDEQDSVRLLAVEACVNIAQLLPQE----------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKT 280 (588)
T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHH----------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHH
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chh
Confidence 9999999999999999999887653 2356788999999999999999999999999987654321 234
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc--ccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhh
Q 013663 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE--PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN 298 (438)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~ 298 (438)
.+++.+..+++|+++.+|..++.++..++...+.... ++.+.++|.+...+++.+..+|..++..+..+++. ..+
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~--~~~- 357 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI--LGK- 357 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH--HCH-
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hhH-
Confidence 5778888888899999999999999999987765432 46788999998889999999999999888887754 111
Q ss_pred HHhhHHHHHHHHHhccCcChhhhhhccccc--c--CCCCCCC---CCCCCccccCCCCCCCCCCCCccccccchhhhhhH
Q 013663 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEE--D--ESLPDRD---QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (438)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~--~--~~~~d~~---~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a 371 (438)
....+.++|.++..+...++++..--... . ... .++ ..+.|.+.. -- .+..|.+|..+
T Consensus 358 -~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~~lp~l~~-----------~~--~d~~~~vr~~~ 422 (588)
T 1b3u_A 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI-GIRQLSQSLLPAIVE-----------LA--EDAKWRVRLAI 422 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS-CHHHHHHHHHHHHHH-----------HH--TCSSHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH-----------Hh--cCCCchHHHHH
Confidence 12345677777777765444432110000 0 000 000 000000000 00 13578999999
Q ss_pred HHHHHHHHhhhchhh-HHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhh
Q 013663 372 AAALDVLSNVFGDEI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (438)
Q Consensus 372 ~~~l~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~ 427 (438)
..+++.++..+|..+ .+.++|.+...+++++ |..|++|+.+++.++..++...
T Consensus 423 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~ 476 (588)
T 1b3u_A 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV---YAIREAATSNLKKLVEKFGKEW 476 (588)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhCchh
Confidence 999999999998855 4688999999998888 9999999999999999887653
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=1.3e-19 Score=183.48 Aligned_cols=373 Identities=16% Similarity=0.124 Sum_probs=245.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHh-h
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPS-N 90 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~-~ 90 (438)
++...|....+++.. +|+.+...|..+.. .+.+...++..|... .+.++.+|..|...|++.... ++++ .
T Consensus 49 ~l~~~L~~~~d~~~~-vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~----~~~~~~ 123 (588)
T 1b3u_A 49 ELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE----HSPSDL 123 (588)
T ss_dssp THHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----SCHHHH
T ss_pred HHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH----CCHHHH
Confidence 344444444444444 56666655554432 122222222222110 145566666666666555432 2332 2
Q ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCC
Q 013663 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (438)
...+.+.+.+...+++..+|..++.+++.++...+...++.++|.+.+.+.++++.+|..++.+++.+++.++..
T Consensus 124 ~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~----- 198 (588)
T 1b3u_A 124 EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD----- 198 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-----
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-----
Confidence 223333333444556788888888888888766555567889999999998889999999999999999887652
Q ss_pred CCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
.....++|.+...++|++..||..|+++++.+....+.. ...+.+++.+..+++|+++.+|..++++++.++.
T Consensus 199 -----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 199 -----NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp -----HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred -----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 245778999999999999999999999999988877642 2234566777777888899999999999999987
Q ss_pred hCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhc-----c
Q 013663 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV-----E 325 (438)
Q Consensus 251 ~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~-----~ 325 (438)
..+.. .+.+.+++.+...+++.+.+||..|...+..+++.........++++.++|.+...+...+..+... .
T Consensus 272 ~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 272 AVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG
T ss_pred HhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 64332 2346788888888999999999999999999887521111112567777777766655332221100 0
Q ss_pred c----cccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhcc
Q 013663 326 A----EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSA 400 (438)
Q Consensus 326 ~----~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~ 400 (438)
. -+.+ ....++.|.+... - .+.+..+|..|..+++.++..+|. ...+.++|.+...+++
T Consensus 350 ~l~~~~~~~---~~~~~l~p~l~~~-----------l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 350 GLSPILGKD---NTIEHLLPLFLAQ-----------L--KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413 (588)
T ss_dssp GGHHHHCHH---HHHHHTHHHHHHH-----------H--TCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHh---HHHHHHHHHHHHH-----------h--CCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 0 0000 0000000000000 0 024568899999999999888877 4568899999888887
Q ss_pred CCCCcchhhHHHHHHHHHHhhcchhh
Q 013663 401 SGDEAWKDREAAVLALGAIAEGCIKG 426 (438)
Q Consensus 401 ~~~~~w~~r~aal~~l~~l~~~~~~~ 426 (438)
++ |+.|.+++.+++.+++.++..
T Consensus 414 ~~---~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 414 AK---WRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHCGG
T ss_pred CC---chHHHHHHHHHHHHHHHcCHH
Confidence 77 999999999999999887764
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.83 E-value=6.4e-18 Score=178.95 Aligned_cols=360 Identities=7% Similarity=0.025 Sum_probs=269.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhcC-------CcHH----HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh----ccC
Q 013663 22 EQQISPSSTADKSQIWQQLQQYSQF-------PDFN----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY----KSM 86 (438)
Q Consensus 22 ~~~~s~d~~~~r~~A~~~L~~~~~~-------p~~~----~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w----~~l 86 (438)
..+.+++.. +|..|...|.++... +.+. +.+...+. + ++.+|..|+..|.+.+...- ..+
T Consensus 418 ~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~---~-~~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 418 NLMNDQSLQ-VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ---D-HPKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HGGGCSCHH-HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT---S-CHHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHcCCCcHH-HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc---c-ChHHHHHHHHHHHHHHHhcccccchhh
Confidence 334456666 999988888766521 2233 33333332 2 38999999999988876531 112
Q ss_pred CHhhHHHHHHHhhhhhhc--CcHHHHHHHHHHHHHHHHhhccC---chHHHHHHHHHHhccC---------------Chh
Q 013663 87 SPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIA---GWLELLQALVTCLDSN---------------DIN 146 (438)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~la~i~~~~~~~---~w~~ll~~l~~~l~~~---------------~~~ 146 (438)
. .....+.+.+++.+.+ .++.+|..+..+++.++...+.. ..+.++|.+++.+.+. ...
T Consensus 493 ~-~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 571 (861)
T 2bpt_A 493 Y-NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571 (861)
T ss_dssp G-GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence 2 2345566777788874 34789999999999999876432 2456666666665421 345
Q ss_pred hHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCH-HHHHHHHHHHHHHHcccchhhHHhHHHHHHH
Q 013663 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (438)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~ 225 (438)
++..++.+++.+++.++..+. ++...+++.+.+.+++.+. .+|..++.+++.++...+..+.++++.+++.
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~--------~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVE--------PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTG--------GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 778899999999998886442 4678899999999988877 8999999999999988888888899999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCC--ChHHHhHHHHHHHHhhccCCChhhHHhhH
Q 013663 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT--DDDVALEACEFWHSYFEAQLPHENLKEFL 303 (438)
Q Consensus 226 l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~l 303 (438)
+...++++++.+|..++.++..++...+..+.+|++.+++.++..+++. +.++|..++..++.++.. ..+.+.+|+
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~--~~~~~~~~l 721 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN--IGADFIPYL 721 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH--HGGGGHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH--hhhhHHHHH
Confidence 9988887788999999999999999888899999999999999888765 378999999999998875 445688999
Q ss_pred HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhc
Q 013663 304 PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (438)
Q Consensus 304 ~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~ 383 (438)
+.++|.+++.+....+ .+ ++++.+....+|..+.+++..++..+|
T Consensus 722 ~~~l~~l~~~~~~~~~----------------------------------~~-d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 722 NDIMALCVAAQNTKPE----------------------------------NG-TLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHTCCCS----------------------------------SS-SHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCC----------------------------------CC-ChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999887653110 00 111112245789999999999998887
Q ss_pred ---h---hhHHhHHHHHHHHhccC----CCCcchhhHHHHHHHHHHhhcc-hhhhhhccc-ccc
Q 013663 384 ---D---EILPTLMPVIQAKLSAS----GDEAWKDREAAVLALGAIAEGC-IKGLYPHLS-EVI 435 (438)
Q Consensus 384 ---~---~~~~~l~~~l~~~l~~~----~~~~w~~r~aal~~l~~l~~~~-~~~~~~~l~-~i~ 435 (438)
+ .+++.+++.+...+.+. + +..|.+|+.+++.++..+ +..+.++++ .++
T Consensus 767 ~~~~~~~~~~~~i~~~l~~~~~d~~~~~~---~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~ 827 (861)
T 2bpt_A 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSE---DATSRAAVGLIGDIAAMFPDGSIKQFYGQDWV 827 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTS---HHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCcccCCc---HHHHHHHHHHHHHHHHHcCCchHHHHHhcHHH
Confidence 2 34566777776776553 5 999999999999999988 777777776 443
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.81 E-value=1.3e-18 Score=191.00 Aligned_cols=330 Identities=15% Similarity=0.148 Sum_probs=252.7
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHH
Q 013663 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL 132 (438)
Q Consensus 53 l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~l 132 (438)
+..+|....+.++++|+.|..-|.+.+++....+++.....+...+++.+.++++.+|+.++.+++.++...++..++.+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33444444488999999999999888776555667677778888899999999999999999999999987666778999
Q ss_pred HHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHccc
Q 013663 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~ 211 (438)
++.+...+.++++.+|.++..+++.++..++..-.. .+....+.+.++|.++..+.+ ++..+|..|+.+++.++...
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~--~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG--SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc--cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 999999999888899999999999999887753100 001123578899999999984 88999999999999999877
Q ss_pred chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC-CChHHHhHHHHHHHHhh
Q 013663 212 PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYF 290 (438)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~-~~~~v~~~a~~~~~~~~ 290 (438)
++.+.++++.+++.+...+.++++.+|..++.++..++...++.+ ++.+++.++..+.+ .+..+|..+++.|..++
T Consensus 166 ~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 666677888999999999999899999999999999998766543 33455555554432 23578889999999998
Q ss_pred ccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhh
Q 013663 291 EAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (438)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~ 370 (438)
+. ..+.+.++++.++|.++..+.. + ...+|..
T Consensus 243 ~~--~~~~~~~~l~~l~~~ll~~l~d----------------------------------------~------~~~vR~~ 274 (1230)
T 1u6g_C 243 RQ--AGHRIGEYLEKIIPLVVKFCNV----------------------------------------D------DDELREY 274 (1230)
T ss_dssp HH--SSGGGTTSCTTHHHHHHHHHSS----------------------------------------C------CTTTHHH
T ss_pred HH--hHHHHHHHHHHHHHHHHHHhcC----------------------------------------C------CHHHHHH
Confidence 75 3346788999999999887741 0 1246889
Q ss_pred HHHHHHHHHhhhchh---hHHhHHHHHHHHhcc----------------------------------CCCCcchhhHHHH
Q 013663 371 SAAALDVLSNVFGDE---ILPTLMPVIQAKLSA----------------------------------SGDEAWKDREAAV 413 (438)
Q Consensus 371 a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~----------------------------------~~~~~w~~r~aal 413 (438)
|..+++.++..+|+. +++.++|.+...+.. .++.+|+.|.+|+
T Consensus 275 a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHH
Confidence 999999999999875 567777766554431 0123599999999
Q ss_pred HHHHHHhhcchhhhhhcccccc
Q 013663 414 LALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 414 ~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
.+++.++...++.+.++++.++
T Consensus 355 ~~l~~l~~~~~~~~~~~~~~l~ 376 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEFYKTVS 376 (1230)
T ss_dssp HHHHHHHTTCCTTHHHHHTTTH
T ss_pred HHHHHHHHhchhHHHHHHHHHH
Confidence 9999999866655666665554
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.81 E-value=3.4e-17 Score=173.64 Aligned_cols=380 Identities=16% Similarity=0.173 Sum_probs=256.5
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHhhc-CC---------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh--
Q 013663 17 ICRLLEQQI-SPSSTADKSQIWQQLQQYSQ-FP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY-- 83 (438)
Q Consensus 17 l~~~l~~~~-s~d~~~~r~~A~~~L~~~~~-~p---------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w-- 83 (438)
+.+.+.... +++.. +|+.|-..|..+.. .| .++..+...+ .+.++.+|..|...+.+.....-
T Consensus 218 il~~l~~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~v~~~al~~l~~l~~~~~~~ 293 (876)
T 1qgr_A 218 IMQVVCEATQCPDTR-VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM---KSDIDEVALQGIEFWSNVCDEEMDL 293 (876)
T ss_dssp HHHHHHHHTTCSSHH-HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHHHHhH
Confidence 444444433 44555 99999999887653 22 3333333333 26778999999888877665421
Q ss_pred ---------------ccCCH---hhHHHHHHHhhhhhh-------cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q 013663 84 ---------------KSMSP---SNQQYIKSELLPCLG-------AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (438)
Q Consensus 84 ---------------~~l~~---~~~~~i~~~ll~~l~-------~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~ 138 (438)
..... .....+...+++.+. +.++.+|+.++.+++.++...+....+.++|.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~ 373 (876)
T 1qgr_A 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373 (876)
T ss_dssp HHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHH
Confidence 00000 111334445666664 23578999999999999987765667889999999
Q ss_pred HhccCChhhHhHHHHHHHHHHhccc-cccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhh--
Q 013663 139 CLDSNDINHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-- 215 (438)
Q Consensus 139 ~l~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-- 215 (438)
.+.+.++.+|.+|+.+++.+++..+ ..+. .++..++|.++..++|+++.||..|+.+++.+....+...
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~--------~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHH--------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 9999999999999999999988765 3221 3578899999999999999999999999999999876542
Q ss_pred HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc--------------ccccccHHHHHHHHhhhhcCC---ChHH
Q 013663 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--------------SFLEPHLRNLFEYMLQVNKDT---DDDV 278 (438)
Q Consensus 216 ~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~--------------~~~~~~~~~li~~~~~~~~~~---~~~v 278 (438)
.++++.+++.++..+.++ +.++..++.++..++.... +.+.||++.+++.++..+.+. +..+
T Consensus 446 ~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 467788899888888775 8899999999999997643 458899999999999887653 3577
Q ss_pred HhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhc---------------------------------cC-cCh-hhhhh
Q 013663 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN---------------------------------MI-YAD-DDESL 323 (438)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---------------------------------l~-~~~-~d~~~ 323 (438)
|..+++.+..++..-. ....+++..++|.++.. +. ... ++...
T Consensus 525 r~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 602 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSA--KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 602 (876)
T ss_dssp HHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHCc--hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH
Confidence 8778887777765411 11222333322222110 00 000 00000
Q ss_pred ccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchh---hHHhHHHHHHHHhcc
Q 013663 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE---ILPTLMPVIQAKLSA 400 (438)
Q Consensus 324 ~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~ 400 (438)
+- ..+-|.+. +.. ++ . .+.+.+|..+..+++.++..+|.. +++.++|.+...+.+
T Consensus 603 ~~-----------~~l~~~l~--~~l--~~---~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 603 IS-----------DVVMASLL--RMF--QS---T----AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp TH-----------HHHHHHHH--HHC--------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHH--HHH--Hh---c----cCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 00 00000000 000 00 0 001356888999999999988874 456678888888877
Q ss_pred C-CCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 401 S-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 401 ~-~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
. + +..|.+++.+++.++..+++.+.++++.+++
T Consensus 661 ~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~ 694 (876)
T 1qgr_A 661 YAE---YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQ 694 (876)
T ss_dssp CTT---HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred cch---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6 5 8999999999999999888878777776653
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.78 E-value=9.1e-17 Score=157.65 Aligned_cols=340 Identities=14% Similarity=0.114 Sum_probs=246.6
Q ss_pred CCHHHHHHHHHHHHHhhcC-----------------Cc----HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC
Q 013663 28 SSTADKSQIWQQLQQYSQF-----------------PD----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (438)
Q Consensus 28 d~~~~r~~A~~~L~~~~~~-----------------p~----~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l 86 (438)
+.. +|..|...|+++-+. ++ .-..++..+. +.++.+ ..++..+.......|..
T Consensus 50 ~~~-vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~v-~~~~~~i~~ia~~~~~~- 123 (462)
T 1ibr_B 50 SQV-ARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG---TETYRP-SSASQCVAGIACAEIPV- 123 (462)
T ss_dssp CHH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT---CCCSSS-CSHHHHHHHHHHHHGGG-
T ss_pred ChH-HHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhC---CCCchh-hHHHHHHHHHHHHhccc-
Confidence 345 899999999876421 11 1123444444 334455 55666776666554431
Q ss_pred CHhhHHHHHHHhhhhhhcC--cHHHHHHHHHHHHHHHHhh-c---cCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHH
Q 013663 87 SPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLG-G---IAGWLELLQALVTCLDSN--DINHMEGAMDALSKI 158 (438)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~la~i~~~~-~---~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l 158 (438)
..-..+.+.+++.+.++ ++.+|..+..+++.+++.. + ....+.+++.+.+.+.+. ++.+|..|+.+++.+
T Consensus 124 --~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 124 --NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp --TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 01123556677778877 8999999999999999754 2 344578999999999887 689999999999988
Q ss_pred HhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHH
Q 013663 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEV 237 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~ 237 (438)
+..+...... ....+.+++.+...+.+++..+|..+++++..++...++.+.++++ .+++.+...+.+.++.+
T Consensus 202 ~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 275 (462)
T 1ibr_B 202 LEFTKANFDK------ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 275 (462)
T ss_dssp TTTTHHHHTS------HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred HHHHHHhhhh------hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 7654432211 0112346777778888999999999999999999888877777777 88888877778888999
Q ss_pred HHHHHHHHHHHHhhC---------------------cccccccHHHHHHHHhhhhcC-------CChHHHhHHHHHHHHh
Q 013663 238 RKLVCAAFNLLIEVR---------------------PSFLEPHLRNLFEYMLQVNKD-------TDDDVALEACEFWHSY 289 (438)
Q Consensus 238 ~~~a~~~l~~l~~~~---------------------~~~~~~~~~~li~~~~~~~~~-------~~~~v~~~a~~~~~~~ 289 (438)
|..+++.+..+++.. ...+.++++.++|.++..+.+ .+..+|..|..++..+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 999999998888652 123445678889988877642 2347899999999998
Q ss_pred hccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhh
Q 013663 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (438)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~ 369 (438)
++.. . ...++.++|.+...+.. .+|.+|.
T Consensus 356 ~~~~--~---~~~~~~~~~~l~~~l~~----------------------------------------------~~~~~r~ 384 (462)
T 1ibr_B 356 ATCC--E---DDIVPHVLPFIKEHIKN----------------------------------------------PDWRYRD 384 (462)
T ss_dssp HHHT--T---TTHHHHHHHHHHHHTTC----------------------------------------------SSHHHHH
T ss_pred HHhc--c---HHHHHHHHHHHHHHhcC----------------------------------------------CChHHHH
Confidence 8752 1 24555666666555531 1488999
Q ss_pred hHHHHHHHHHhhhch----hhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhh--hhcccccc
Q 013663 370 CSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YPHLSEVI 435 (438)
Q Consensus 370 ~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~--~~~l~~i~ 435 (438)
+|..+++.++...+. ..++.++|.+...+++++ +.+|.+|+.+++.+++.+++.+ .++++.++
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~---~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS---VVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 999999999987652 456889999999999988 9999999999999999887654 35665554
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.74 E-value=1.1e-15 Score=149.37 Aligned_cols=342 Identities=13% Similarity=0.075 Sum_probs=246.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhh---cCC---------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QFP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~---~~p---------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~ 84 (438)
+..+++.+.++|.. +|..|...|.++. .+| +.++.|...+.+ +.++.+|..|+..|++....
T Consensus 22 l~~l~~~l~s~~~~-~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~~v~~~a~~~L~~l~~~--- 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPE-QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR--KENCTLQFESAWVLTNIASG--- 95 (450)
T ss_dssp CHHHHHHHHSSCHH-HHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC--CCCHHHHHHHHHHHHHHhcC---
Confidence 33444555578877 9999999998863 232 567777888864 44899999999999887642
Q ss_pred cCCHhhH-----HHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHHHHHhcc-CChhhHhHHHHH
Q 013663 85 SMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDS-NDINHMEGAMDA 154 (438)
Q Consensus 85 ~l~~~~~-----~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l~~~l~~-~~~~~r~~al~~ 154 (438)
+++.. ..+.+.+++.+.++++.+|..++.+++.++..... ... .+.++.++..+.+ .++.+|..++.+
T Consensus 96 --~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 96 --NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173 (450)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred --CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence 11111 23456677778888999999999999999875321 111 2468888888885 688999999999
Q ss_pred HHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCC
Q 013663 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDP 233 (438)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~ 233 (438)
|+.++....+... ......++|.+.+.+.+++..++..|+.++..+....++...... ..+++.+..++.++
T Consensus 174 L~~l~~~~~~~~~-------~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 246 (450)
T 2jdq_A 174 LSNLCRGKSPPPE-------FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN 246 (450)
T ss_dssp HHHHHCCSSSCCC-------GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS
T ss_pred HHHHhCCCCCCCC-------HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC
Confidence 9999976522111 123477899999999999999999999999998876543221111 24567777778888
Q ss_pred CHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHH
Q 013663 234 SAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLL 311 (438)
Q Consensus 234 ~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~ 311 (438)
++.++..++.++..++...+......+ ..+++.+...+++.+..+|..|+..+..++.. ........+ ..++|.++
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~ 324 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG--NRAQIQTVIDANIFPALI 324 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHH
Confidence 999999999999999876544322222 25788888888888999999999999999863 222223333 35677777
Q ss_pred hccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchh----hH
Q 013663 312 SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE----IL 387 (438)
Q Consensus 312 ~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~----~~ 387 (438)
..+.. . +..+|..|..+|..++...... ++
T Consensus 325 ~~l~~----------------------------------------~------~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 325 SILQT----------------------------------------A------EFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp HHHHH----------------------------------------S------CHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHhc----------------------------------------C------CHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66631 0 1467889999999998763221 22
Q ss_pred -HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 388 -PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 388 -~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
..++|.+...+++++ ++.|+.++.+|+.+++.+.
T Consensus 359 ~~~~i~~L~~ll~~~~---~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMD---SKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHTCHHHHHHGGGSSC---HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCC---HHHHHHHHHHHHHHHHhch
Confidence 347888888888887 9999999999999998654
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.72 E-value=1.5e-15 Score=151.96 Aligned_cols=342 Identities=13% Similarity=0.074 Sum_probs=249.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CC--------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p--------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+..++..+.++|.. +|..|...|.++.. .| +.++.|...|.+ +.++.+|..|+..|.+....
T Consensus 89 i~~lv~~L~s~~~~-~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~--~~~~~v~~~A~~~L~~l~~~---- 161 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE--NQPEMLQLEAAWALTNIASG---- 161 (530)
T ss_dssp HHHHHHHHSCSSHH-HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST--TSCHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHhCC----
Confidence 56666667777777 99999999998743 23 356667777753 34899999999999887542
Q ss_pred CCHhhHHH-----HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cc--hHHHHHHHHHHhccCChhhHhHHHHHHH
Q 013663 86 MSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AG--WLELLQALVTCLDSNDINHMEGAMDALS 156 (438)
Q Consensus 86 l~~~~~~~-----i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~--w~~ll~~l~~~l~~~~~~~r~~al~~l~ 156 (438)
+++.+.. +...+++.|.++++.+|..++.+|+.|+...+. .. -.+.++.|+..+.+.++.++..++++|.
T Consensus 162 -~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 162 -TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240 (530)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2333322 245677778888999999999999999865211 11 1247888999998888899999999999
Q ss_pred HHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCH
Q 013663 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSA 235 (438)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~ 235 (438)
.++..-..... ......++|.+...+.+++..++..|+.+|+.+....++.....+. .+++.+..++.++++
T Consensus 241 ~L~~~~~~~~~-------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~ 313 (530)
T 1wa5_B 241 NLCRGKKPQPD-------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313 (530)
T ss_dssp HHHCCSSSCCC-------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHhCCCCCCCc-------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh
Confidence 99976522111 1245678999999999999999999999999998765443332222 467778888888899
Q ss_pred HHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhc
Q 013663 236 EVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSN 313 (438)
Q Consensus 236 ~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~ 313 (438)
.++..++.++..++...+......+ ..+++.++..+.+.+..++..|+..+..++.. ....+..++ ..++|.|+..
T Consensus 314 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~--~~~~~~~~~~~~~l~~L~~l 391 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG--NTEQIQAVIDANLIPPLVKL 391 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999865544322222 26788888888888999999999999999864 222233333 3466777666
Q ss_pred cCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhH----
Q 013663 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL---- 387 (438)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~---- 387 (438)
+.. .+..+|..|..+|..++...+. ...
T Consensus 392 L~~----------------------------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~ 425 (530)
T 1wa5_B 392 LEV----------------------------------------------AEYKTKKEACWAISNASSGGLQRPDIIRYLV 425 (530)
T ss_dssp HHH----------------------------------------------SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred Hhc----------------------------------------------CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 531 0246788999999999876432 221
Q ss_pred -HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 388 -PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 388 -~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
..++|.+...+.+++ +..|..++.+|..++..+.
T Consensus 426 ~~~~l~~L~~ll~~~~---~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIAD---NRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HTTCHHHHHHHTTTCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhhh
Confidence 236777888888877 9999999999999987654
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=8e-15 Score=148.25 Aligned_cols=333 Identities=15% Similarity=0.150 Sum_probs=226.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHH
Q 013663 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (438)
Q Consensus 19 ~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~ 96 (438)
+++..+.++|.. +|+.+...+..+.+ +|+....+.+.+..+ .+.++.+|..|...|.+. .+++....+..
T Consensus 53 ~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~~ 124 (591)
T 2vgl_B 53 DVVNCMQTDNLE-LKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLCE 124 (591)
T ss_dssp HHHHTTSSSCHH-HHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHHH
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHHH
Confidence 334445566666 78888888777665 566654444544433 467788888777655443 26667778888
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchH--HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc--ccc--C-
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LDS--D- 169 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~--~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~--~~~--~- 169 (438)
.+.+++.++++.||++++.++..+++.. ++.++ ++++.+.+.+.++++.++..|+.+|..++..-+.. +.- .
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 8889999999999999999999999864 55665 58999999999999999999999999998865422 000 0
Q ss_pred CCCCC-------------------------cchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc---chhhHHhHHH
Q 013663 170 VPGLA-------------------------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQ 221 (438)
Q Consensus 170 ~~~~~-------------------------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~ 221 (438)
+..++ ......+++.+...+++.++.|+..|++++..+...+ ++.+...+..
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 00000 0122456777777888889999999999998886543 2333333345
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHh
Q 013663 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (438)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~ 301 (438)
+.+.+..+. ++++++|..+++++..++..+|+.+.+++..+ -+..+.+..||..|++++..++...
T Consensus 284 ~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~-----~~~~~d~~~Ir~~al~~L~~l~~~~-------- 349 (591)
T 2vgl_B 284 LAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVF-----FVKYNDPIYVKLEKLDIMIRLASQA-------- 349 (591)
T ss_dssp THHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT-----SCCTTSCHHHHHHHHHHHHHTCCSS--------
T ss_pred HHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhh-----eeccCChHHHHHHHHHHHHHHCChh--------
Confidence 555555444 47899999999999999999999887776643 1323445899999999999988652
Q ss_pred hHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh
Q 013663 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV 381 (438)
Q Consensus 302 ~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~ 381 (438)
.+..+++.+..++... ++.+|..+...++.++..
T Consensus 350 nv~~iv~~L~~~l~~~----------------------------------------------d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 350 NIAQVLAELKEYATEV----------------------------------------------DVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp THHHHHHHHHHHTTSS----------------------------------------------CHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhcC----------------------------------------------CHHHHHHHHHHHHHHHHh
Confidence 2345566665555311 135678888888888887
Q ss_pred hchhhHHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
++. ....+++.+...+.+.. ...+..++.+++.+....+
T Consensus 384 ~~~-~~~~~v~~Ll~ll~~~~---~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 384 VEQ-SAERCVSTLLDLIQTKV---NYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp CHH-HHHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHSC
T ss_pred Chh-HHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHCc
Confidence 753 22334444445555544 4445555667777766544
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.69 E-value=1.4e-14 Score=144.69 Aligned_cols=342 Identities=13% Similarity=0.092 Sum_probs=247.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-C--C--------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-F--P--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~--p--------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
..+..++..+.++|.. +|..|...|.++.. . | +.++.|..+|.+ +.++.+|..|+..|.+....
T Consensus 74 ~~l~~lv~~L~s~~~~-~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~v~~~A~~~L~~l~~~-- 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNN-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR--EDFPQLQFEAAWALTNIASG-- 148 (528)
T ss_dssp -CHHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHhCC--
Confidence 3466777777788887 99999999988743 2 2 456778888864 44599999999999887542
Q ss_pred ccCCHhhHHH-----HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHHHHHh-ccCChhhHhHHHH
Q 013663 84 KSMSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCL-DSNDINHMEGAMD 153 (438)
Q Consensus 84 ~~l~~~~~~~-----i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l~~~l-~~~~~~~r~~al~ 153 (438)
+++.+.. ....|++.|.++++.+|..++.+++.|+...+. ... .+.++.|+..+ .+.++.++..+++
T Consensus 149 ---~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 149 ---TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225 (528)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH
T ss_pred ---CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH
Confidence 2333332 345677778888999999999999999865321 111 13678888888 5678899999999
Q ss_pred HHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCC
Q 013663 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSND 232 (438)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~ 232 (438)
+|..++...+..- ......++|.+.+.+.+++..++..|+.+|+.+....+......+. .+++.+..++.+
T Consensus 226 ~L~~L~~~~~~~~--------~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 226 TLSNFCRGKPQPS--------FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp HHHHHHCSSSCCC--------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHcCCCCCc--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 9999998753321 1235778999999999999999999999999988665432222221 467778888888
Q ss_pred CCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCC-ChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHH
Q 013663 233 PSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPV 309 (438)
Q Consensus 233 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~ 309 (438)
+++.++..++.++..++...+......+ ..+++.++..+.+. +..++..|+..+..++.. ....+...+ ..++|.
T Consensus 298 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~ 375 (528)
T 4b8j_A 298 PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NKDQIQAVINAGIIGP 375 (528)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTCHHH
T ss_pred CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHH
Confidence 8899999999999999875544332222 35778888888877 899999999999998864 222222222 256677
Q ss_pred HHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhH--
Q 013663 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL-- 387 (438)
Q Consensus 310 l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-- 387 (438)
|+..+... +..+|..|..+|..++..-.....
T Consensus 376 L~~lL~~~----------------------------------------------~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (528)
T 4b8j_A 376 LVNLLQTA----------------------------------------------EFDIKKEAAWAISNATSGGSHDQIKY 409 (528)
T ss_dssp HHHHHHHS----------------------------------------------CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhcC----------------------------------------------CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 76665310 145688899999999877323222
Q ss_pred ---HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcc
Q 013663 388 ---PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 388 ---~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
..+++.+...+.+++ +..+..++.+|+.++...
T Consensus 410 l~~~~~i~~L~~lL~~~d---~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 410 LVSEGCIKPLCDLLICPD---IRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHTTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHH
Confidence 346778888888888 999999999999998644
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.66 E-value=9.7e-15 Score=142.73 Aligned_cols=312 Identities=14% Similarity=0.129 Sum_probs=223.7
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc-CCHhhHH-HHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhc-
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-MSPSNQQ-YIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGG- 125 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~-l~~~~~~-~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~- 125 (438)
++.+...+. +.++.+|..|+..|++.+.+.+.. +..-... .+...+++.+.++ ++.+|..++.+++.++....
T Consensus 22 l~~l~~~l~---s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 98 (450)
T 2jdq_A 22 TSDMIEMIF---SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98 (450)
T ss_dssp CHHHHHHHH---SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 455667775 578999999999999987643321 1111122 4566777888877 89999999999999987431
Q ss_pred -cCc--hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-CCHHHHHHHH
Q 013663 126 -IAG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSL 201 (438)
Q Consensus 126 -~~~--w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al 201 (438)
... ..+++|.+++.++++++.+|..|+.+|+.++...+..-.. -.-..+++.+++.+.+ ++..+|..|+
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY-------VLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH-------HHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 111 2468999999999999999999999999998865432100 0113578899999985 7899999999
Q ss_pred HHHHHHHccc-chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHH
Q 013663 202 GSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVA 279 (438)
Q Consensus 202 ~~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~ 279 (438)
.+++++.... +..-...+..+++.+..++.++++.++..++.++..++...++...... ..+++.++..+.+.+.+++
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 9999998654 3211122345677777778888899999999999999875443222211 2467777788888899999
Q ss_pred hHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCc
Q 013663 280 LEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (438)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d 358 (438)
..|+..+..++... .......+ ..++|.++..+...
T Consensus 252 ~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~----------------------------------------- 288 (450)
T 2jdq_A 252 SPALRAVGNIVTGD--DIQTQVILNCSALQSLLHLLSSP----------------------------------------- 288 (450)
T ss_dssp HHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHTTCS-----------------------------------------
T ss_pred HHHHHHHHHHhhCC--hHHHHHHHHCccHHHHHHHHcCC-----------------------------------------
Confidence 99999999998751 11112222 24677776666410
Q ss_pred cccccchhhhhhHHHHHHHHHhhhch---hhH-HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhc
Q 013663 359 DDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~ 422 (438)
.+.+|..|..+|+.++....+ .++ ..++|.+...+.+++ +..|..++.+++.++.+
T Consensus 289 -----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 289 -----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE---FRTRKEAAWAITNATSG 348 (450)
T ss_dssp -----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHcC
Confidence 256789999999999864433 222 357777888888887 89999999999999876
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.63 E-value=1.5e-14 Score=144.58 Aligned_cols=312 Identities=13% Similarity=0.125 Sum_probs=225.3
Q ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh----HHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHH
Q 013663 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN----QQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQ 122 (438)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~----~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~ 122 (438)
+.+..+...|. +.++.+|..|+..|++.+.+. . ++.. ...+...+++.|.++ ++.+|..++.+|+.++.
T Consensus 87 ~~i~~lv~~L~---s~~~~~~~~A~~~L~~ll~~~--~-~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~ 160 (530)
T 1wa5_B 87 QELPQMTQQLN---SDDMQEQLSATVKFRQILSRE--H-RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160 (530)
T ss_dssp CCHHHHHHHHS---CSSHHHHHHHHHHHHHHTCCS--S-SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCC--C-CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 34566777775 457999999999999886532 0 1111 223445677777776 89999999999999987
Q ss_pred hhc--cCch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHH
Q 013663 123 LGG--IAGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (438)
Q Consensus 123 ~~~--~~~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~ 198 (438)
... ...+ .+.+|.|+..+.++++.+|..|+++|+.++...+..-. . -....+++.++..+.+++..++.
T Consensus 161 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~-----~--~~~~~~l~~L~~ll~~~~~~v~~ 233 (530)
T 1wa5_B 161 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD-----Y--VLQCNAMEPILGLFNSNKPSLIR 233 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH-----H--HHHTTCHHHHHHGGGSCCHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH-----H--HHHcCcHHHHHHHhccCCHHHHH
Confidence 532 1112 35688999999999999999999999999976443210 0 01245789999999999999999
Q ss_pred HHHHHHHHHHccc-chhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCCh
Q 013663 199 LSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDD 276 (438)
Q Consensus 199 ~al~~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~ 276 (438)
.|+.+|..+.... +..-......+++.+..++.++++.++..++.+|..++...+......+. .+++.++..+.+.+.
T Consensus 234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~ 313 (530)
T 1wa5_B 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh
Confidence 9999999998764 32112233456777888888888999999999999999765544433333 677888888888899
Q ss_pred HHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 013663 277 DVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (438)
Q Consensus 277 ~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 355 (438)
.++..|+..+..++... .......+ ..++|.++..+...
T Consensus 314 ~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-------------------------------------- 353 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP-------------------------------------- 353 (530)
T ss_dssp HHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS--------------------------------------
T ss_pred hhHHHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCC--------------------------------------
Confidence 99999999999988641 11112222 25677777666410
Q ss_pred CCccccccchhhhhhHHHHHHHHHhhhchh---hH-HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcc
Q 013663 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGDE---IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 356 ~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
.+.+|..|..+|+.++...++. ++ ..++|.+...+++++ +..|..++.+|+.++.+.
T Consensus 354 --------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 354 --------KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE---YKTKKEACWAISNASSGG 414 (530)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcC
Confidence 2577899999999998654432 12 346777777787777 999999999999998864
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.58 E-value=2.1e-13 Score=136.24 Aligned_cols=310 Identities=14% Similarity=0.121 Sum_probs=221.4
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH----HHHHHHhhhhhhcCc-HHHHHHHHHHHHHHHHhh
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ----QYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~----~~i~~~ll~~l~~~~-~~vr~~~a~~la~i~~~~ 124 (438)
++.+...|. +.++.+|..|+..|++.+...- ++... ..+...|++.|.+++ +.+|..++.+|+.|+...
T Consensus 76 l~~lv~~L~---s~~~~~~~~A~~~L~~l~s~~~---~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 76 LPAMIGGVY---SDDNNLQLEATTQFRKLLSIER---SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp HHHHHHHHT---SSCHHHHHHHHHHHHHHHTCSS---SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCC---CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 445666664 5689999999999998865421 11122 234456777777765 999999999999999753
Q ss_pred c--cCch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHH
Q 013663 125 G--IAGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKL 199 (438)
Q Consensus 125 ~--~~~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~ 199 (438)
. .... .+.+|.|+..+.++++.++..|+++|+.++...+..-.. -.-...++.+++.+ .+++..++..
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------i~~~g~l~~Ll~lL~~~~~~~v~~~ 222 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL-------VLANGALLPLLAQLNEHTKLSMLRN 222 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH-------HHHTTCHHHHHHTCCTTCCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH-------HHHCCcHHHHHHHHhcCCCHHHHHH
Confidence 1 1111 148899999999999999999999999999765432100 01134788899999 6789999999
Q ss_pred HHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHH
Q 013663 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDV 278 (438)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v 278 (438)
|+.+|..+....+..-......+++.+..++.++++.++..++.+|..++...+......+. .+++.++..+.+.++.+
T Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v 302 (528)
T 4b8j_A 223 ATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302 (528)
T ss_dssp HHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhH
Confidence 99999999887543222334567788888888889999999999999998654433222222 57788888888889999
Q ss_pred HhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 013663 279 ALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (438)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~ 357 (438)
+..|+..+..++... .......+ ..++|.|+..+...
T Consensus 303 ~~~a~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~---------------------------------------- 340 (528)
T 4b8j_A 303 LIPALRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQN---------------------------------------- 340 (528)
T ss_dssp HHHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSC----------------------------------------
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCC----------------------------------------
Confidence 999999999998641 11112222 34566666665411
Q ss_pred ccccccchhhhhhHHHHHHHHHhhhchh---h-HHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhc
Q 013663 358 DDDIVNVWNLRKCSAAALDVLSNVFGDE---I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~ 422 (438)
....+|..|..+|..++...++. + -..++|.+...+.+++ +..|..|+.+|+.++.+
T Consensus 341 -----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 341 -----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE---FDIKKEAAWAISNATSG 401 (528)
T ss_dssp -----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHcC
Confidence 02467888999999998654331 1 2356788888888887 89999999999999986
No 28
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.58 E-value=7e-13 Score=131.63 Aligned_cols=339 Identities=12% Similarity=0.094 Sum_probs=236.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CC--------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p--------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+..++..+.|.|.+ .+.+|...+.++.. +| +.++.|..+|.. +.++.++..|+..|.|...
T Consensus 59 i~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~~~~lq~~Aa~aL~nias----- 130 (510)
T 3ul1_B 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIAS----- 130 (510)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHhc-----
Confidence 67778888899998 99999999988652 44 457778888874 6779999999999998753
Q ss_pred CCHhhHHHH-----HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cc--hHHHHHHHHHHhccCCh-----hhHhHH
Q 013663 86 MSPSNQQYI-----KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AG--WLELLQALVTCLDSNDI-----NHMEGA 151 (438)
Q Consensus 86 l~~~~~~~i-----~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~--w~~ll~~l~~~l~~~~~-----~~r~~a 151 (438)
-+++.+..+ ...|+++|.+++..+|..++.+|+.|+..... .. -...++.++..+.+.+. .....+
T Consensus 131 ~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence 244444333 35677888899999999999999999864321 01 11356777777776542 345677
Q ss_pred HHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhh
Q 013663 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLS 230 (438)
Q Consensus 152 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~ 230 (438)
.+++..++..-..... -.....++|.+.+++.+++.+++..|+.++..+...-++...... ..+++.+..++
T Consensus 211 ~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHCCCSSCCC-------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhhcccchhH-------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 8888888775433211 123577899999999999999999999999998765432211111 13566777778
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHH
Q 013663 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVP 308 (438)
Q Consensus 231 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~ 308 (438)
.++++.++..++.++..++...+..-...+ ...++.+...+++.+++++..|...+..++.. ......... ..++|
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~--~~~~~~~v~~~g~i~ 361 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQIQQVVNHGLVP 361 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHH
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHhcCCHH
Confidence 888999999999999998765433221111 13455566667788999999999999888764 111122221 24677
Q ss_pred HHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhH-
Q 013663 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL- 387 (438)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~- 387 (438)
.++..+... +..+|..|..+|..++........
T Consensus 362 ~Lv~lL~~~----------------------------------------------~~~v~~~Aa~aL~Nl~~~~~~~~~~ 395 (510)
T 3ul1_B 362 FLVGVLSKA----------------------------------------------DFKTQKEAAWAITNYTSGGTVEQIV 395 (510)
T ss_dssp HHHHHHHSS----------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHcCC----------------------------------------------CHHHHHHHHHHHHHHHccCCHHHHH
Confidence 777666421 245688899999998865433222
Q ss_pred ----HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhh
Q 013663 388 ----PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 388 ----~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~ 421 (438)
...++.+..++.+++ .+.+..++.+|..|..
T Consensus 396 ~L~~~g~i~~L~~LL~~~d---~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 396 YLVHCGIIEPLMNLLSAKD---TKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHTTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCC---HHHHHHHHHHHHHHHH
Confidence 335677778888888 8999999999988775
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.57 E-value=7.6e-13 Score=133.75 Aligned_cols=364 Identities=12% Similarity=0.108 Sum_probs=237.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhh--cC--CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH
Q 013663 20 LLEQQISPSSTADKSQIWQQLQQYS--QF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (438)
Q Consensus 20 ~l~~~~s~d~~~~r~~A~~~L~~~~--~~--p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~ 95 (438)
+-..+.++|.. .|+.|-..+-.+. .. +.....+..++ .+.+..+|+++...+.+.... .++....+.
T Consensus 18 i~~~L~~~~~~-~k~~~~~kli~~~~~G~d~~~~~~~vi~l~---~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~~ 88 (591)
T 2vgl_B 18 LKAELNNEKKE-KRKEAVKKVIAAMTVGKDVSSLFPDVVNCM---QTDNLELKKLVYLYLMNYAKS-----QPDMAIMAV 88 (591)
T ss_dssp HHHHTTSSCHH-HHHHHHHHHHHHHHTTCCCGGGHHHHHHTT---SSSCHHHHHHHHHHHHHHHHH-----SHHHHHTTH
T ss_pred HHHHHcCCCHH-HHHHHHHHHHHHHHCCCChHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccc-----CchHHHHHH
Confidence 33344467766 7877777765443 21 22333344433 378899999999999876553 345555556
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCc
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (438)
+.+.+.+.++++.+|..+..+++.+. .+.-++.++|.+.+.+.+.++.+|..|+.++..+++..++.+.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~-------- 157 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE-------- 157 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH--------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc--------
Confidence 77778888999999988877777664 4567889999999999999999999999999999986654321
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchh-hHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
-..+++.+.+.+.|+++.|+..|+.+++.+....++. .....+..+..++..+.+.++..+..+++++..+....
T Consensus 158 --~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~-- 233 (591)
T 2vgl_B 158 --DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD-- 233 (591)
T ss_dssp --HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS--
T ss_pred --cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC--
Confidence 1468899999999999999999999999988765532 11222334444444445567777777777665443211
Q ss_pred cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccC-CChhhHHhhHHHHHHHHHhccCcChhhhhh-----ccccc
Q 013663 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESL-----VEAEE 328 (438)
Q Consensus 255 ~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~-----~~~~~ 328 (438)
......+++.+...+++.+..|+..|+.++..+.... ...+.+...+..+.+.++..+. .+.++.. ...--
T Consensus 234 --~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 234 --DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIV 310 (591)
T ss_dssp --HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 1234678888888889999999999999999986421 1112344444555555554333 2222210 00000
Q ss_pred cCCCCCCC---CCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCCCc
Q 013663 329 DESLPDRD---QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (438)
Q Consensus 329 ~~~~~d~~---~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (438)
. .+|+ .+++..+ + . .++ ..++|..|.+++..++. +.-+..+++.+...+.+.+
T Consensus 311 ~---~~p~~~~~~~~~~~-~--------~--~~d----~~~Ir~~al~~L~~l~~---~~nv~~iv~~L~~~l~~~d--- 366 (591)
T 2vgl_B 311 Q---KRPEILKQEIKVFF-V--------K--YND----PIYVKLEKLDIMIRLAS---QANIAQVLAELKEYATEVD--- 366 (591)
T ss_dssp H---HCCSTTTTCTTTTS-C--------C--TTS----CHHHHHHHHHHHHHTCC---SSTHHHHHHHHHHHTTSSC---
T ss_pred H---hChHHHHHHHHhhe-e--------c--cCC----hHHHHHHHHHHHHHHCC---hhhHHHHHHHHHHHHhcCC---
Confidence 0 0011 0111100 0 0 011 26789989888777653 3345667777777777777
Q ss_pred chhhHHHHHHHHHHhhcchhhhhhccccc
Q 013663 406 WKDREAAVLALGAIAEGCIKGLYPHLSEV 434 (438)
Q Consensus 406 w~~r~aal~~l~~l~~~~~~~~~~~l~~i 434 (438)
+..|..++.+++.++...+.....+++.+
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~~~~~v~~L 395 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQSAERCVSTL 395 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 99999999999999987765444444443
No 30
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.56 E-value=1.9e-12 Score=129.21 Aligned_cols=340 Identities=12% Similarity=0.094 Sum_probs=236.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CC--------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ---FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p--------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~ 84 (438)
.+..++.++.|+|.. .+.+|...+.++.. +| +.++.|..+|.. +.++.++..|+..|.|....
T Consensus 77 ~l~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~~~~~q~~Aa~aL~nia~~--- 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG--- 150 (529)
T ss_dssp CHHHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcC---
Confidence 367778888899988 99999999987642 33 456678888864 67899999999999987542
Q ss_pred cCCHhhHH-----HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHHHHHhccCC-----hhhHhH
Q 013663 85 SMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSND-----INHMEG 150 (438)
Q Consensus 85 ~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l~~~l~~~~-----~~~r~~ 150 (438)
+++... .....|+.++.+++..++..++.+|+.|+...+. ..- .+.++.|+..+.+.+ ......
T Consensus 151 --~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 151 --TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred --CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 333322 2345677788899999999999999999864311 000 134677777776543 235567
Q ss_pred HHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHh
Q 013663 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLL 229 (438)
Q Consensus 151 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~ 229 (438)
+.+++..++..-..... ......++|.+.+++.+++.+++..|+.+|..+...-++...... ..+++.|..+
T Consensus 229 a~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 78888888875543211 123577899999999999999999999999998875433221111 2356677777
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHH
Q 013663 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLV 307 (438)
Q Consensus 230 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~ 307 (438)
+.++++.++..++.++..++...+..-...+ ...++.+...+++.+++++..|+-.+..++.. ........+ ..++
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~--~~~~~~~v~~~g~i 379 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQIQQVVNHGLV 379 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHH
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--cHHHHHHHHhcCcH
Confidence 8888999999999999999865433221111 24556667777888999999999999888764 112122222 2467
Q ss_pred HHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhH
Q 013663 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (438)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (438)
|.++..+... ...+|..|..+|..++........
T Consensus 380 ~~Lv~lL~~~----------------------------------------------~~~v~~~A~~aL~nl~~~~~~~~~ 413 (529)
T 3tpo_A 380 PFLVGVLSKA----------------------------------------------DFKTQKAAAWAITNYTSGGTVEQI 413 (529)
T ss_dssp HHHHHHHHSS----------------------------------------------CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhcCC----------------------------------------------CHHHHHHHHHHHHHHHcCCCHHHH
Confidence 7777666421 245688899999988865433222
Q ss_pred -----HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhh
Q 013663 388 -----PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 388 -----~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~ 421 (438)
..+++.+..++.++| .+.+..++.+|..|..
T Consensus 414 ~~l~~~g~i~~L~~LL~~~d---~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 414 VYLVHCGIIEPLMNLLSAKD---TKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHhcCCC---HHHHHHHHHHHHHHHH
Confidence 235677778888888 8999999999988764
No 31
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=4.3e-13 Score=119.74 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=164.6
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHc
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~ 209 (438)
.+-+.+.+.+.+.++..|..|+..|..+++..+.... .....+++.+.+.+. |++..||..|+.+++.++.
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--------~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--------GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK 86 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--------CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3445677788899999999999999999987654322 234778999999995 9999999999999999998
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
.+...+.++++.+++.++..+.|+++.+|..+..++..++... .++.+++.+...+++.+..+|..++.++..+
T Consensus 87 ~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 87 GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 8877888899999999999999999999999999999998753 2578888888889989999999999999997
Q ss_pred hccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhh
Q 013663 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (438)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~ 369 (438)
...-.......++++.++|.++..+.+ ..+.+|.
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D----------------------------------------------~~~~VR~ 194 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNE----------------------------------------------PDPTVRD 194 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTS----------------------------------------------SCHHHHH
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcC----------------------------------------------CChHHHH
Confidence 654111123567888999998887731 1368899
Q ss_pred hHHHHHHHHHhhhchhhHHhHHH
Q 013663 370 CSAAALDVLSNVFGDEILPTLMP 392 (438)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~ 392 (438)
+|..+++.++..+|+..+..+++
T Consensus 195 ~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 195 SSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999865544433
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=6.4e-13 Score=118.61 Aligned_cols=195 Identities=10% Similarity=0.136 Sum_probs=163.2
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhh---ccCchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~---~~~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
.+.+.+.+.++..|+.++..|..++... ......++++.|...+. +.+..+|..|+.+++.++..++..+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~----- 93 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS----- 93 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH-----
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH-----
Confidence 4666777889999999999999998862 13557899999999995 88999999999999999998876543
Q ss_pred CCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
.++..++|.++..+.|++..||.+|..++..++...+ ++.+++.+...+++.++.+|..++..+..++..+
T Consensus 94 ---~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 94 ---NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp ---HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999987653 4567788888888889999999999999988776
Q ss_pred -cc-cccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHH
Q 013663 253 -PS-FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (438)
Q Consensus 253 -~~-~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l 306 (438)
+. .+.++++.++|.+..++.|.+.+||..|++.+..++..- ..+.+.++++.+
T Consensus 165 ~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v-g~~~~~~~l~~L 219 (242)
T 2qk2_A 165 QPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM-GDKAVTPLLADV 219 (242)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH-CHHHHGGGGTTS
T ss_pred CCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc-CHHHHHHHHHhc
Confidence 44 577899999999999999999999999999999987651 112345555543
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.51 E-value=1.7e-12 Score=131.69 Aligned_cols=295 Identities=13% Similarity=0.083 Sum_probs=187.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhh
Q 013663 25 ISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL 102 (438)
Q Consensus 25 ~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l 102 (438)
.++|-. .||-+.-.+..+.. +|+......+.+..+ .+.++.+|.+|+..|.+.. +++....+...+.+++
T Consensus 80 ~s~~~~-~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 80 ASQKFT-DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp HSSSHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred cCCchH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHH
Confidence 356666 67777776666554 555433344443332 4677777777777776642 4455667777888888
Q ss_pred hcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH
Q 013663 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (438)
Q Consensus 103 ~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (438)
.++++.||++++.+++.+++..+ +.-+.+++.+...+.+.++.++..|+.+|..+++.-+... .....++
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~---------~~~~~~v 221 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML---------AHFRKLV 221 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH---------HHHHTTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH---------HHHHHHH
Confidence 88899999999999999988653 3334667777777888888899999999988876544210 0122233
Q ss_pred HHHHHhcc---------------CCCHHHHHHHHHHHHHHHcccch---hhH----------------------------
Q 013663 183 PRLLQFFQ---------------SPHTSLRKLSLGSVNQFIMLMPS---ALF---------------------------- 216 (438)
Q Consensus 183 ~~l~~~l~---------------~~~~~vr~~al~~l~~~~~~~~~---~~~---------------------------- 216 (438)
|.+++.+. .+++-.+...+++++.+...-|+ .+.
T Consensus 222 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 222 PQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 33333222 12445555555555554432211 000
Q ss_pred -------HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 217 -------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 217 -------~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
......++.+..++.++++.+|..++.++..++..+|..+.+|...+ +.++.+.+..||..|++.+..+
T Consensus 302 ~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i----~~~l~d~d~~Ir~~alelL~~l 377 (618)
T 1w63_A 302 MDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTI----VDCLKDLDVSIKRRAMELSFAL 377 (618)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHH----HHGGGSSCHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHH----HHHccCCChhHHHHHHHHHHHH
Confidence 00112345566667777889999999999999998888777766554 4556788999999999999999
Q ss_pred hccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhh
Q 013663 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (438)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~ 369 (438)
+...+ +..+++.++.++... +..+|.
T Consensus 378 ~~~~n--------v~~iv~eL~~~l~~~----------------------------------------------d~e~r~ 403 (618)
T 1w63_A 378 VNGNN--------IRGMMKELLYFLDSC----------------------------------------------EPEFKA 403 (618)
T ss_dssp CCSSS--------THHHHHHHHHHHHHC----------------------------------------------CHHHHH
T ss_pred ccccc--------HHHHHHHHHHHHHhC----------------------------------------------CHHHHH
Confidence 87532 233444555544310 135688
Q ss_pred hHHHHHHHHHhhhch---hhHHhHHHHHH
Q 013663 370 CSAAALDVLSNVFGD---EILPTLMPVIQ 395 (438)
Q Consensus 370 ~a~~~l~~l~~~~~~---~~~~~l~~~l~ 395 (438)
.+..+++.++..++. ++++.++..+.
T Consensus 404 ~~v~~I~~la~k~~~~~~~~v~~ll~lL~ 432 (618)
T 1w63_A 404 DCASGIFLAAEKYAPSKRWHIDTIMRVLT 432 (618)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 888999999887743 45565555543
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.8e-12 Score=115.77 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=163.7
Q ss_pred hhhhhhcCcHHHHHHHHHHHHH-HHHhh---c--cCchHHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccc-cccccC
Q 013663 98 LLPCLGAADRHIRSTVGTIVSV-VVQLG---G--IAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIP-QVLDSD 169 (438)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~la~-i~~~~---~--~~~w~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~-~~~~~~ 169 (438)
+.+.+.+.++.-|+.+...|+. ++... . ...+.+++..|...+ .+.+..++..|+.+++.+++.+. ..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f--- 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF--- 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS---
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc---
Confidence 4556678899999999999999 87542 1 346789999999999 68889999999999999998887 544
Q ss_pred CCCCCc-chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhH-HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013663 170 VPGLAE-CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (438)
Q Consensus 170 ~~~~~~-~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~ 247 (438)
. .+...++|.++..+.+....|+.++..++..++...+.... .+++.+++.++..+++.++.+|..++.++..
T Consensus 98 -----~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 98 -----SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp -----CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3 47889999999999999999999999999999887643211 1266788888888888899999999999999
Q ss_pred HHhhCc---ccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHH
Q 013663 248 LIEVRP---SFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (438)
Q Consensus 248 l~~~~~---~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~ 305 (438)
++...+ ..|.+++ +.++|.+..++.|.+.+||..|++.+..++..- ..+.+.++++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v-G~~~~~p~l~~ 233 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF-GMNTFVKTLEH 233 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-CSGGGHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 998876 5688899 999999999999999999999999999987651 11235555554
No 35
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.3e-12 Score=113.26 Aligned_cols=206 Identities=10% Similarity=0.146 Sum_probs=165.1
Q ss_pred HHHHhccCChhhHhHHHHHHHH-HHhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHcccc-
Q 013663 136 LVTCLDSNDINHMEGAMDALSK-ICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMP- 212 (438)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~-l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~- 212 (438)
+.+.+++.+|..|..|+..|.. +++..+..... ......++..+.+.+ +|.+..||..|+++++.++..+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~------~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST------SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT------TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC------cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3456688999999999999999 88765543210 012357788999999 79999999999999999998887
Q ss_pred hhhH-HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc-cccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhh
Q 013663 213 SALF-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 213 ~~~~-~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~ 290 (438)
..|. ++...+++.++..+.+....++..+..++..+++...+.. .++++.+++.++..+++.+..+|..++.++..++
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 6777 8889999999999999889999999999999998764432 1348899999999999889999999999999998
Q ss_pred ccCCC-hhhHHhhH-HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhh
Q 013663 291 EAQLP-HENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (438)
Q Consensus 291 ~~~~~-~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r 368 (438)
..... ...+.+++ +.++|.+.+.+.++ ...+|
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~----------------------------------------------~~~VR 208 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT----------------------------------------------QPAIR 208 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCS----------------------------------------------SHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCC----------------------------------------------CHHHH
Confidence 76221 24567888 99999998877310 25789
Q ss_pred hhHHHHHHHHHhhhchhhHHhHHHH
Q 013663 369 KCSAAALDVLSNVFGDEILPTLMPV 393 (438)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (438)
.+|..++..++..+|+..+...++-
T Consensus 209 ~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 209 TIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999654444443
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=1.9e-11 Score=124.11 Aligned_cols=172 Identities=9% Similarity=0.043 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~ 141 (438)
+.+...|+++-..+.+... -+++..-.+-+.+.+-|.++++.+|..+..+++.|... .--+.+++.+...+.
T Consensus 81 s~~~~~Krl~Yl~~~~~~~-----~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLD-----ERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMCRDLAGEVEKLLK 152 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHc
Confidence 5677777777766655432 24565566778888888999999999999999998742 233678999999999
Q ss_pred cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch---hhHHh
Q 013663 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVS 218 (438)
Q Consensus 142 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~ 218 (438)
+.++.+|..|+.++..++...++. +..+++.+...+.|.++.|+..|+.++..+...-|+ .+...
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~------------v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPEL------------MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGG------------GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHChHH------------HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999977753 345777788899999999999999999998776543 23334
Q ss_pred HHHHHHHHHHhhC-----------CCCHHHHHHHHHHHHHHHhhCc
Q 013663 219 MDQYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 219 ~~~ll~~l~~~~~-----------~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
++.++..|.++.. .+++..+..+++++..+....|
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 4555555444321 2467777788888887775543
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.38 E-value=1.2e-10 Score=124.42 Aligned_cols=346 Identities=11% Similarity=0.067 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHhhc-CCc-HH----HHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHhhh--c-cCCH-----hhHHHH
Q 013663 32 DKSQIWQQLQQYSQ-FPD-FN----NYLAFILAR---AEGKSVEIRQAAGLLLKNNLRTAY--K-SMSP-----SNQQYI 94 (438)
Q Consensus 32 ~r~~A~~~L~~~~~-~p~-~~----~~l~~il~~---~~~~~~~~R~~A~~~Lk~~i~~~w--~-~l~~-----~~~~~i 94 (438)
.|+.|...|..+.. .++ .. .++...+.. +.+.+-..|..|..++.....+.- . .... +....+
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 79999999988774 332 22 333333431 113345677777777766543210 0 1111 344455
Q ss_pred HHHhhhhhhcC---cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccc------cc
Q 013663 95 KSELLPCLGAA---DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP------QV 165 (438)
Q Consensus 95 ~~~ll~~l~~~---~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~------~~ 165 (438)
.+.++..+.++ .+.||..++.+++.++....+..++.+++.+++.+.++++.++..|..+|..+++... ..
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~ 536 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccc
Confidence 66788888877 8999999999999998765456688899999999988888999999999999998532 11
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCC---HH--HHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh----CC-CCH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPH---TS--LRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS----ND-PSA 235 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~---~~--vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~----~~-~~~ 235 (438)
+.. ..+.+++..+++.+++.++... .+ ....++++++.++...++.+.++++.+++.+...+ ++ .++
T Consensus 537 ~~~---~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~ 613 (960)
T 1wa5_C 537 FHK---EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP 613 (960)
T ss_dssp SCG---GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH
T ss_pred ccH---HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCc
Confidence 111 1234678889999998887741 22 34578899999888777777777776666555433 33 356
Q ss_pred HHHHHHHHHHHHHHhh-CcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHH--h
Q 013663 236 EVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL--S 312 (438)
Q Consensus 236 ~~~~~a~~~l~~l~~~-~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~ 312 (438)
..+..++++++.++.. .++.+.++.+.++|.+...+.....+....+++.+..+.+.. +.+.+++..++|.+. .
T Consensus 614 ~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 614 RFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS---ATIPESIKPLAQPLLAPN 690 (960)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC---SSCCTTTGGGHHHHTSGG
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHcCHH
Confidence 7788899999999886 556677777888898888876555567777888887776541 235567777777665 2
Q ss_pred ccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhH--HhH
Q 013663 313 NMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL--PTL 390 (438)
Q Consensus 313 ~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l 390 (438)
.+.. . .+ -.....+|+.+....++.+. ..+
T Consensus 691 ~~~~----------------------------------------~------~~--~~~~~~~L~~~~~~~~~~~~~~~~~ 722 (960)
T 1wa5_C 691 VWEL----------------------------------------K------GN--IPAVTRLLKSFIKTDSSIFPDLVPV 722 (960)
T ss_dssp GGCC----------------------------------------T------TT--HHHHHHHHHHHHHHHGGGCSCSHHH
T ss_pred HhcC----------------------------------------C------CC--chhHHHHHHHHHHhChHHHHHHHHH
Confidence 2210 0 01 11355556666555554444 445
Q ss_pred HHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhh-hhhccccccc
Q 013663 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEVIF 436 (438)
Q Consensus 391 ~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~-~~~~l~~i~~ 436 (438)
+..+...+.+.. .+..++.+++.++..++.. +.+|+|.+++
T Consensus 723 l~~~~~~~~~~~-----~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~ 764 (960)
T 1wa5_C 723 LGIFQRLIASKA-----YEVHGFDLLEHIMLLIDMNRLRPYIKQIAV 764 (960)
T ss_dssp HHHHHHHHTCTT-----THHHHHHHHHHHHHHSCHHHHGGGHHHHHH
T ss_pred HHHHHHHhCCCc-----ccchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 555555555543 2478899999999988877 8999988765
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.37 E-value=9.8e-10 Score=109.51 Aligned_cols=274 Identities=12% Similarity=0.099 Sum_probs=192.0
Q ss_pred CCCCHHHHHHHHHHHHHhhc-C---------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH
Q 013663 26 SPSSTADKSQIWQQLQQYSQ-F---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (438)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~ 95 (438)
+.++..++..|...|..+.. + .+.++.|..++. +.++.+|..|+..|.|.... +++.+..+.
T Consensus 130 ~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~---s~~~~v~e~A~~aL~nLa~~-----~~~~r~~i~ 201 (529)
T 3tpo_A 130 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAGA-----GSAFRDLVI 201 (529)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcc-----CHHHHHHHH
Confidence 34444388888888888763 2 345677777665 68899999999999987542 455555543
Q ss_pred -----HHhhhhhhcC-----cHHHHHHHHHHHHHHHHhh-ccCch---HHHHHHHHHHhccCChhhHhHHHHHHHHHHhc
Q 013663 96 -----SELLPCLGAA-----DRHIRSTVGTIVSVVVQLG-GIAGW---LELLQALVTCLDSNDINHMEGAMDALSKICED 161 (438)
Q Consensus 96 -----~~ll~~l~~~-----~~~vr~~~a~~la~i~~~~-~~~~w---~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~ 161 (438)
..|+..+..+ ...+.+.++.+++.++... +...+ ..++|.|...+.++++.++..++++|.+++..
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 3466666532 3456778889999998764 22333 56899999999999999999999999999876
Q ss_pred cccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHH
Q 013663 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKL 240 (438)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~ 240 (438)
-...... -....++|.++.++.+++..++..|++++++++...+......+ ...++.+..++.++++.+++.
T Consensus 282 ~~~~~~~-------v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 282 PNERIEM-------VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp CHHHHHH-------HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred hhhhHHH-------HHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 5442110 01245788999999999999999999999999865432211111 134566777788889999999
Q ss_pred HHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccC
Q 013663 241 VCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMI 315 (438)
Q Consensus 241 a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~ 315 (438)
++.++..++...+........ .++|.++..+++.+.+++..|...+..++... ..+.+...+ ..+++.|+..+.
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~-~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCcCHHHHHHHhc
Confidence 999999998765544333332 58888888888899999999998888876531 111111111 135666666554
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.37 E-value=2.8e-11 Score=108.24 Aligned_cols=228 Identities=15% Similarity=0.087 Sum_probs=169.1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH-----HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~ 124 (438)
++.+...|. +.++.+|..|+..|++..... ++.+. .+...+++.+.++++.+|..++.+++.++...
T Consensus 4 i~~L~~~L~---~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 4 VEKLVKLLT---STDSETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHTT---CSCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 455666775 455889999998888876432 22222 34456777788889999999999999998752
Q ss_pred cc--Cch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHH
Q 013663 125 GI--AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS 200 (438)
Q Consensus 125 ~~--~~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~a 200 (438)
.. ... .+.++.++..+.++++.++..++.+|..++...+..... -.-...++.+++.+.++++.++..|
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~~l~~~~~~~~~~a 148 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA-------IVDAGGVEVLVKLLTSTDSEVQKEA 148 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH-------HHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 11 111 247899999999999999999999999998654432110 0124578999999999999999999
Q ss_pred HHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHH
Q 013663 201 LGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDV 278 (438)
Q Consensus 201 l~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v 278 (438)
+.+++++....+....... ...++.+..++.++++.++..++.++..++...+....... ..+++.++..+++.+.++
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 228 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEV 228 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHH
Confidence 9999999876543211111 24678888888888999999999999999875544332222 257788888888889999
Q ss_pred HhHHHHHHHHhhcc
Q 013663 279 ALEACEFWHSYFEA 292 (438)
Q Consensus 279 ~~~a~~~~~~~~~~ 292 (438)
+..|+..+..++..
T Consensus 229 ~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 229 QKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998875
No 40
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.36 E-value=2e-11 Score=109.37 Aligned_cols=234 Identities=15% Similarity=0.098 Sum_probs=170.9
Q ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-
Q 013663 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI- 126 (438)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~- 126 (438)
..+..+...|. +.++++|..|+..|++.+...-.....-....+...+++.|.++++.+|..++.+|+.++.....
T Consensus 12 ~~~~~~~~~L~---s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 12 SELPQMTQQLN---SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CSHHHHHHHHH---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred chHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 34566777776 57889999999999887765200000011123346677888888899999999999999874311
Q ss_pred -Cc--hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHH
Q 013663 127 -AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (438)
Q Consensus 127 -~~--w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~ 203 (438)
.. -.+.+|.+++.++++++.++..|+.+|+.++..-..... ...-...++.+++.+.+++..+|..|+.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-------~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ-------AVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-------HHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH-------HHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 124789999999999999999999999999876544211 01124578999999999999999999999
Q ss_pred HHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH-HHHHHHhhhhcCCChHHHhH
Q 013663 204 VNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALE 281 (438)
Q Consensus 204 l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~~~~~~~~~~~~v~~~ 281 (438)
++++....++.....+ ...++.+..++.++++.++..++.+|..++...+........ ..++.+...+++.+++++..
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence 9999875543222111 246777888888889999999999999998655544333333 57888888888889999999
Q ss_pred HHHHHHHhhc
Q 013663 282 ACEFWHSYFE 291 (438)
Q Consensus 282 a~~~~~~~~~ 291 (438)
|...+..++.
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9988887654
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.36 E-value=4.7e-10 Score=113.56 Aligned_cols=334 Identities=11% Similarity=0.095 Sum_probs=208.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHH
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i 94 (438)
+.+++..+.++|-. .||-+.-.+..+.+ +|+......+.+..+ .+.++.+|-+|+..|.+. .+++..+.+
T Consensus 76 ~~~vvkl~~s~~~~-~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i-------~~~e~~~~l 147 (621)
T 2vgl_A 76 HMEAVNLLSSNRYT-EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV-------GSREMAEAF 147 (621)
T ss_dssp HHHHHHGGGCSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-------CCHHHHHHH
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc-------CCHHHHHHH
Confidence 34556666677877 88888888888775 677655555555543 578889998888887765 246677788
Q ss_pred HHHhhhhh--hcCcHHHHHHHHHHHHHHHHhhccCchH--HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCC
Q 013663 95 KSELLPCL--GAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (438)
Q Consensus 95 ~~~ll~~l--~~~~~~vr~~~a~~la~i~~~~~~~~w~--~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (438)
...+.+++ .+.++.||++++.++..+.+..+ +.-+ ++++.+.+.+.+.++.++.+|+.++..++..-+..+.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~--- 223 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK--- 223 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT---
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH---
Confidence 88888999 78999999999999999998753 1222 4566666777888999999999999999887665321
Q ss_pred CCCCcchhhhHHHHHHHhccCC-------------CHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCC-C---
Q 013663 171 PGLAECPINIFLPRLLQFFQSP-------------HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-P--- 233 (438)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~-------------~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~--- 233 (438)
..++.++..+.+.+... ++-.+...++.+..+...-+......+..++..+...+.+ +
T Consensus 224 -----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~ 298 (621)
T 2vgl_A 224 -----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSK 298 (621)
T ss_dssp -----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred -----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccc
Confidence 23444444444444321 4667777777776654321122233333344433332211 1
Q ss_pred -----C--HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHH
Q 013663 234 -----S--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (438)
Q Consensus 234 -----~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l 306 (438)
+ ..+...+.+++..+. + ..++....++.+...+.+.+.++|..|+..+..++........+.++...
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~---~--~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~- 372 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD---S--EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIET- 372 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC---C--CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHH-
T ss_pred cccccchHHHHHHHHHHHHHhcC---C--cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHH-
Confidence 1 245555555555442 1 12334456666666667788899999999999887652112233333333
Q ss_pred HHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhh
Q 013663 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (438)
Q Consensus 307 ~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (438)
++..+.. |+ +.++|..|.+++..++.. .-
T Consensus 373 ---i~~~L~~-----------------------------------------d~----d~~Ir~~aL~lL~~l~~~---~N 401 (621)
T 2vgl_A 373 ---VINALKT-----------------------------------------ER----DVSVRQRAVDLLYAMCDR---SN 401 (621)
T ss_dssp ---HHHHHTT-----------------------------------------CC----CHHHHHHHHHHHHHHCCH---HH
T ss_pred ---HHHHhcc-----------------------------------------CC----CHhHHHHHHHHHHHHcCh---hh
Confidence 3333320 01 135777777777766533 33
Q ss_pred HHhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhhh
Q 013663 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (438)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~~ 427 (438)
+..++..+...+.+.+ ...|..++.+++.+++..+...
T Consensus 402 v~~Iv~eL~~yl~~~d---~~~~~~~v~~I~~la~k~~~~~ 439 (621)
T 2vgl_A 402 AQQIVAEMLSYLETAD---YSIREEIVLKVAILAEKYAVDY 439 (621)
T ss_dssp HHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcCCcH
Confidence 4455555555555555 6778888888888876544333
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.34 E-value=4.5e-10 Score=102.29 Aligned_cols=196 Identities=13% Similarity=0.067 Sum_probs=144.6
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCc
Q 013663 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG 128 (438)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~ 128 (438)
.+..|...|. +.++.+|..|+..|.+.- ++ .....+++.+.++++.+|..++.+++.+.. ....
T Consensus 24 ~i~~L~~~L~---~~~~~vr~~A~~~L~~~~-------~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~ 87 (280)
T 1oyz_A 24 NDDELFRLLD---DHNSLKRISSARVLQLRG-------GQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKC 87 (280)
T ss_dssp CHHHHHHHTT---CSSHHHHHHHHHHHHHHC-------CH----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTT
T ss_pred hHHHHHHHHH---cCCHHHHHHHHHHHHccC-------Cc----hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--cccc
Confidence 3455666665 568899999998887641 22 344567778888899999999999887642 2334
Q ss_pred hHHHHHHHHH-HhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 129 WLELLQALVT-CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 129 w~~ll~~l~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
.+.+++.+.. .+.++++.+|..++.+|+.+....+. ....+++.+...++++++.||..|+.+++.+
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI------------YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc------------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 6677777764 45677889999999999988754432 2456788889999999999999999998765
Q ss_pred HcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHH
Q 013663 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (438)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~ 287 (438)
.. +..++.+..++.++++.+|..++.++..+.. .-+..++.+...+++.+..||..|+..+.
T Consensus 156 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 32 1234455666788889999999999987631 12467777778888889999999998888
Q ss_pred Hhh
Q 013663 288 SYF 290 (438)
Q Consensus 288 ~~~ 290 (438)
.+.
T Consensus 218 ~~~ 220 (280)
T 1oyz_A 218 YRK 220 (280)
T ss_dssp HTT
T ss_pred HhC
Confidence 765
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.34 E-value=7.9e-11 Score=105.25 Aligned_cols=226 Identities=15% Similarity=0.060 Sum_probs=167.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CC---------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p---------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l 86 (438)
+..++..+.+++.. +|..|...|..+.. .+ +.+..|..++. +.++.+|..|+..|.+....
T Consensus 4 i~~L~~~L~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~----- 74 (252)
T 4hxt_A 4 VEKLVKLLTSTDSE-TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASG----- 74 (252)
T ss_dssp HHHHHHHTTCSCHH-HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcC-----
Confidence 44556666677866 99999999998865 32 46667777776 46799999999999887532
Q ss_pred CHhhHHH-----HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--C--chHHHHHHHHHHhccCChhhHhHHHHHHHH
Q 013663 87 SPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--A--GWLELLQALVTCLDSNDINHMEGAMDALSK 157 (438)
Q Consensus 87 ~~~~~~~-----i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~--~w~~ll~~l~~~l~~~~~~~r~~al~~l~~ 157 (438)
+++.+.. ....+++.+.++++.+|..++.+++.++..... . .-.+.++.+++.+.++++.++..++.+|+.
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2343333 345677778888999999999999999954311 0 012578999999999999999999999999
Q ss_pred HHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHH
Q 013663 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~ 236 (438)
++...+..... ..-...++.+.+.+.++++.+|..|+.++.++....+....... ...++.+..++.++++.
T Consensus 155 l~~~~~~~~~~-------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 155 IASGPDEAIKA-------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HTTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHcCCHHHHHH-------HHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 98765432110 11245889999999999999999999999999875443222221 24678888888888999
Q ss_pred HHHHHHHHHHHHHhhCcccccc
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEP 258 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~ 258 (438)
++..++.++..+....+....+
T Consensus 228 v~~~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHHHHHHHHTCBCCC--
T ss_pred HHHHHHHHHHHHHcCCCccccc
Confidence 9999999999999876655443
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.32 E-value=2.1e-10 Score=113.80 Aligned_cols=311 Identities=15% Similarity=0.136 Sum_probs=210.3
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh----HHHHHHHhhhhhhc-CcHHHHHHHHHHHHHHHHhh
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN----QQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~----~~~i~~~ll~~l~~-~~~~vr~~~a~~la~i~~~~ 124 (438)
+..+..-+. +.+++.+.-|...+|+.+.+. . ++.. ...+.+.|+++|.. .++.++..+|.+|+.|+...
T Consensus 59 i~~~v~~l~---s~d~~~q~~a~~~~rklls~e--~-~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGIN---SNNLESQLQATQAARKLLSRE--K-QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHT---SSCHHHHHHHHHHHHHHHTCS--S-CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcCC--C-CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 444555553 789999999999999887642 1 2222 23445677777864 57899999999999999754
Q ss_pred ccC--ch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCC-----HH
Q 013663 125 GIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-----TS 195 (438)
Q Consensus 125 ~~~--~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-----~~ 195 (438)
... .- ...+|.|++.+.++++.+++.|+++|+.++.+.+..-. . -.-...++.++..+..++ ..
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~-----~--v~~~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD-----L--VIKHGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH-----H--HHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH-----H--HHHcCChHHHHHHHHhccchhhhHH
Confidence 211 11 24789999999999999999999999999876554200 0 012346788888887654 34
Q ss_pred HHHHHHHHHHHHHcccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcC
Q 013663 196 LRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKD 273 (438)
Q Consensus 196 vr~~al~~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~ 273 (438)
+...++.++.++..... ..-......+++.|..++.+++++++..++.++..++........... ..+++.++..+.+
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 56677788888776432 111233456788888888999999999999999999865443322111 2467777888888
Q ss_pred CChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCC
Q 013663 274 TDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSE 352 (438)
Q Consensus 274 ~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~ 352 (438)
.+..++..|+..+..++... .......+ ...++.+...+.
T Consensus 286 ~~~~v~~~al~aL~nl~~~~--~~~~~~i~~~g~l~~L~~LL~------------------------------------- 326 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLT------------------------------------- 326 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTGGGGCC-CTT-------------------------------------
T ss_pred CChhhhhHHHHHHHHhhcCC--HHHHHHHhhccchHHHHHHhc-------------------------------------
Confidence 89999999999998887541 11001111 011222222221
Q ss_pred CCCCCccccccchhhhhhHHHHHHHHHhhhch---hhH-HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 353 ~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
. ....+|..|..+|..++...++ .+. ..++|.+...+.+++ +..|..|..+|+.++.+..
T Consensus 327 ----~-----~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 327 ----N-----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD---FKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp ----C-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCC
T ss_pred ----C-----CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHccCC
Confidence 0 1246788999999999865544 122 347788888888888 9999999999999887543
No 45
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.32 E-value=1.3e-09 Score=113.59 Aligned_cols=331 Identities=15% Similarity=0.060 Sum_probs=226.9
Q ss_pred cCCCCHHHHHHHHHHHHHhhc----------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH--
Q 013663 25 ISPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-- 92 (438)
Q Consensus 25 ~s~d~~~~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~-- 92 (438)
.++|.. +|..|...|..+.. .++.+..|...|.+ +.++.+|..|+..|++.... .+.+.
T Consensus 160 ~~~d~~-vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~------~~~~~~i 230 (780)
T 2z6g_A 160 NDEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHH------REGLLAI 230 (780)
T ss_dssp HCSCHH-HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTS------HHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCC------chhHHHH
Confidence 356777 99999999988764 34677788888875 56899999999999984321 11122
Q ss_pred ---HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 93 ---YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 93 ---~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
.....|++.+.++++.++..++.+|..|+..... ... ...++.++..+.+++..++..++.+|..++......
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH
Confidence 3345677788888999999999999999976321 111 357899999999888888999999998777533221
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCCHH-HHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTS-LRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCA 243 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~-vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~ 243 (438)
.. . ..-...++.++..+.+.+.+ ++..++.++..+... +......+ ...++.+..++.+.++.++..++.
T Consensus 311 ~~-~------i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~ 382 (780)
T 2z6g_A 311 KL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382 (780)
T ss_dssp HH-H------HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHH
T ss_pred HH-H------HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHH
Confidence 00 0 01124577788888876554 556778888777643 22111111 145778888888888999999999
Q ss_pred HHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhhh
Q 013663 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDES 322 (438)
Q Consensus 244 ~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~ 322 (438)
++..++...+.. .....+++.++..+++.+.+++..|+..+..++... .+.....+ ...++.|+..+....
T Consensus 383 ~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~---- 454 (780)
T 2z6g_A 383 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAG---- 454 (780)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHHHT----
T ss_pred HHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHccC----
Confidence 999999766543 234678898888888899999999999999987752 11111111 235566665553100
Q ss_pred hccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch------hh-HHhHHHHHH
Q 013663 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EI-LPTLMPVIQ 395 (438)
Q Consensus 323 ~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~------~~-~~~l~~~l~ 395 (438)
+ ...+|..|..+|+.++...++ .+ -...+|.+.
T Consensus 455 ----------------------------------~------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~ 494 (780)
T 2z6g_A 455 ----------------------------------D------REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494 (780)
T ss_dssp ----------------------------------T------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------------C------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHH
Confidence 0 125678899999988754332 11 134577777
Q ss_pred HHhccCCCCcchhhHHHHHHHHHHhhc
Q 013663 396 AKLSASGDEAWKDREAAVLALGAIAEG 422 (438)
Q Consensus 396 ~~l~~~~~~~w~~r~aal~~l~~l~~~ 422 (438)
..+.+++. |..|.+++.+|+.++.+
T Consensus 495 ~lL~~~~~--~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 495 KLLHPPSH--WPLIKATVGLIRNLALC 519 (780)
T ss_dssp HTTSTTCC--HHHHHHHHHHHHHHHSS
T ss_pred HHhcCCCh--HHHHHHHHHHHHHHhcC
Confidence 78876642 79999999999999864
No 46
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.32 E-value=1.7e-09 Score=110.78 Aligned_cols=350 Identities=11% Similarity=0.045 Sum_probs=229.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCc--------HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh---h--hc
Q 013663 18 CRLLEQQISPSSTADKSQIWQQLQQYSQFPD--------FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT---A--YK 84 (438)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~--------~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~---~--w~ 84 (438)
..++.-+.|++.. ++.+|...+......+. .++.|..++. +.++.+|..|++.|.+.-.. . -.
T Consensus 293 ~~li~Ll~s~~~~-~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~---s~~~~vr~~Al~~L~kl~s~~~~d~~~~ 368 (810)
T 3now_A 293 QMILAMATTDDEL-QQRVACECLIAASSKKDKAKALCEQGVDILKRLYH---SKNDGIRVRALVGLCKLGSYGGQDAAIR 368 (810)
T ss_dssp HHHHHHHHSSCHH-HHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHc---CCCHHHHHHHHHHHHHhccccccCcccc
Confidence 3344444567777 89999998888765432 2355666664 45688999999988765311 0 01
Q ss_pred cCCHhhHHHHHHHhhhhhhcC--cHHHHHHHHHHHHHHHHhhc-cCch---HHHHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 85 SMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGG-IAGW---LELLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~la~i~~~~~-~~~w---~~ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
.+.......+-..+.++|.++ +..+|+.++.+|+.++.... ...| ..++|.|++.+.+++.....+++.+|..+
T Consensus 369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NL 448 (810)
T 3now_A 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNL 448 (810)
T ss_dssp SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 222233445566777888876 88999999999999986532 1222 47999999999998899999999999999
Q ss_pred Hhccccc-cccCC---CCCCcc------------hh---------hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch
Q 013663 159 CEDIPQV-LDSDV---PGLAEC------------PI---------NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (438)
Q Consensus 159 ~~~~~~~-~~~~~---~~~~~~------------~~---------~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (438)
+...... ..+++ ..+... ++ ...+|.|.+++.++++.+|..|+.+++++... ++
T Consensus 449 t~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~ 527 (810)
T 3now_A 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KE 527 (810)
T ss_dssp TTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HH
T ss_pred cCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 9854321 00000 000000 01 24689999999999999999999999999853 22
Q ss_pred hhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh-Cccc-ccc-cHHHHHHHHhhhhcCC-ChHHHhHHHHHHH
Q 013663 214 ALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSF-LEP-HLRNLFEYMLQVNKDT-DDDVALEACEFWH 287 (438)
Q Consensus 214 ~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~-~~~~-~~~-~~~~li~~~~~~~~~~-~~~v~~~a~~~~~ 287 (438)
....+ ...++.|..++.++++..++.|+.++..++.. .|+. |.. .....+|.++..+... +...+..|+..+.
T Consensus 528 -~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~ 606 (810)
T 3now_A 528 -LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606 (810)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 22222 13566777777777889999999999998864 3333 211 1234677777777643 3344557887888
Q ss_pred HhhccC-CChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchh
Q 013663 288 SYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (438)
Q Consensus 288 ~~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~ 366 (438)
.++... .....+.. ...+|.|+..+.. .+..
T Consensus 607 NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s----------------------------------------------~~~~ 638 (810)
T 3now_A 607 NLASMNESVRQRIIK--EQGVSKIEYYLME----------------------------------------------DHLY 638 (810)
T ss_dssp HHTTSCHHHHHHHHH--TTHHHHHHHHHHS----------------------------------------------CCTT
T ss_pred HHhcCCHHHHHHHHH--cCCHHHHHHHHcC----------------------------------------------CCHH
Confidence 887652 11111111 1244555544421 0135
Q ss_pred hhhhHHHHHHHHHhhhch--hhH--HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhhcch
Q 013663 367 LRKCSAAALDVLSNVFGD--EIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~--~~~--~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~ 424 (438)
+|..|..+|+.++..-.. .+. ...++.+..++.+++ ...|.+|..+|+.++.|..
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d---~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED---EETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS---HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC---HHHHHHHHHHHHHHhCCCH
Confidence 688999999999864322 233 246778888888877 8999999999999998643
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.31 E-value=1.5e-09 Score=110.87 Aligned_cols=331 Identities=14% Similarity=0.045 Sum_probs=228.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCC----------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH-
Q 013663 25 ISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY- 93 (438)
Q Consensus 25 ~s~d~~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~- 93 (438)
.+++.. +|..|...|.++.... +.+..|...|.+ +.++.+|..|+..|++.... ++.+..
T Consensus 24 ~~~~~~-vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~~~L~~Ls~~------~~~~~~i 94 (644)
T 2z6h_A 24 NDEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH------REGLLAI 94 (644)
T ss_dssp TCSCHH-HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTS------HHHHHHH
T ss_pred cCCCHH-HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcC------hhhHHHH
Confidence 357777 9999999999887532 446667777764 56899999999999864321 222222
Q ss_pred ----HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 94 ----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 94 ----i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
....+++.+.++++.++..++.+|..++..... ... ...+|.|++.++++++..+..++.+|..++...+..
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 335677778888999999999999999976421 111 357899999999988888888888998888643321
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCC-HHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVC 242 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~ 242 (438)
-. .-.-...++.+++.+.+.+ ..++..++.++..+... +. ....+ ...++.+..++.+++..++..++
T Consensus 175 ~~-------~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 175 KL-------IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HH-------HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TT-HHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HH-------HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 00 0011345788888887754 56778889998887643 22 11211 13677788888888899999999
Q ss_pred HHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhh
Q 013663 243 AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDE 321 (438)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~ 321 (438)
.+|..++...+.. .....+++.++..+++.+.+++..|...+..++... .+.....+ ...++.|+..+...
T Consensus 246 ~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~~~---- 317 (644)
T 2z6h_A 246 WTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRA---- 317 (644)
T ss_dssp HHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHH----
T ss_pred HHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHHcc----
Confidence 9999998765543 234578899999988889999999999999887641 11111111 23566666655310
Q ss_pred hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-h-----hH-HhHHHHH
Q 013663 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-E-----IL-PTLMPVI 394 (438)
Q Consensus 322 ~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~-----~~-~~l~~~l 394 (438)
. +...+|..|..+|..++...++ . +. ...+|.+
T Consensus 318 -----------------------------------~-----~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L 357 (644)
T 2z6h_A 318 -----------------------------------G-----DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357 (644)
T ss_dssp -----------------------------------T-----TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHH
T ss_pred -----------------------------------C-----CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHH
Confidence 0 0135678899999999754332 1 11 3467778
Q ss_pred HHHhccCCCCcchhhHHHHHHHHHHhhcc
Q 013663 395 QAKLSASGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 395 ~~~l~~~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
...+.+++ +|..|.+++.+++.++.+.
T Consensus 358 ~~lL~~~~--~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 358 VKLLHPPS--HWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHTTSTTC--CHHHHHHHHHHHHHHTTSG
T ss_pred HHHhCccC--chHHHHHHHHHHHHHccCH
Confidence 88887753 2889999999999998753
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.31 E-value=7.3e-10 Score=100.91 Aligned_cols=225 Identities=12% Similarity=0.035 Sum_probs=165.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHH
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~ 96 (438)
+..++..+.++|.. +|..|...|.++. .|+.+..|...+. +.++.+|..|+..|.+.- -+++....+..
T Consensus 25 i~~L~~~L~~~~~~-vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~------~~~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSL-KRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIK------ICKKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHH-HHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSC------CCTTTHHHHHH
T ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhc------cccccchHHHH
Confidence 44555666677777 9999999998886 4667777888775 578999999998886531 12222333434
Q ss_pred Hhhh-hhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCc
Q 013663 97 ELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (438)
Q Consensus 97 ~ll~-~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (438)
.+.+ ++.++++.||..++.+++.+....+ ...+.+++.+...+.++++.+|..++.+|+.+..
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------------- 157 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------------- 157 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---------------
Confidence 4443 4568899999999999999986532 2346899999999999999999999999875321
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
...++.+...+.++++.||..|+.+++.+-... +..++.+...+.|+++.+|..++.+|..+..
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----- 221 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----- 221 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence 236678888999999999999999998763211 2455667777888899999999999987652
Q ss_pred ccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 256 ~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
+..++.++..+++. ++|..|+..+..+..
T Consensus 222 -----~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 222 -----KRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp -----GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred -----HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 23455555566553 388899888887754
No 49
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.30 E-value=2.6e-09 Score=109.46 Aligned_cols=350 Identities=11% Similarity=0.045 Sum_probs=233.6
Q ss_pred HHHHHHHHHh-hcCC--CCHHHHHHHHHHHHHhhc----------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013663 14 FNEICRLLEQ-QISP--SSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (438)
Q Consensus 14 ~~~l~~~l~~-~~s~--d~~~~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~ 80 (438)
+.++...+.. +.++ |.+ +|+.|-..|..+.. .+++++.|..++. +.++.+++-|+.+|.|...
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~-v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~---s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKD-IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR---GGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSS-HHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH---TTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC---CCChHHHHHHHHHHHHHcC
Confidence 3444444433 3455 677 99999999988763 3467777888886 4678899999999999875
Q ss_pred hh--------------hccC--C--------HhhH----H----HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-C
Q 013663 81 TA--------------YKSM--S--------PSNQ----Q----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-A 127 (438)
Q Consensus 81 ~~--------------w~~l--~--------~~~~----~----~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~ 127 (438)
.+ +... + +..+ . .....+.+++.++++.+|..++.+|+.|+..... .
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~ 530 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG 530 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 21 1110 0 0111 1 2234566667788999999999999999854211 1
Q ss_pred ch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHHHHHHHHHHH
Q 013663 128 GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSV 204 (438)
Q Consensus 128 ~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l 204 (438)
.. .+.+|.|+..+.++++..++.|.++|..++....+... +. .......+|.|..++.++ +...+..|+.+|
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~--~~---~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL 605 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS--FS---GQRSLDVIRPLLNLLQQDCTALENFESLMAL 605 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH--TT---THHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh--hc---chhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 11 24688888889988889999999999999876443210 00 012345789999999865 444566899999
Q ss_pred HHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH--HHHHHHHhhhhcCCChHHHhH
Q 013663 205 NQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDTDDDVALE 281 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~li~~~~~~~~~~~~~v~~~ 281 (438)
.++...-++.-...+. ..++.+..++.++++.+++.|+++++.++.. ++....+. ...++.++..+...+.+++..
T Consensus 606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence 9988764321111111 3456666666677889999999999999863 33333333 257888888888889999999
Q ss_pred HHHHHHHhhccCCChhhHHhhH--HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCcc
Q 013663 282 ACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (438)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~ 359 (438)
|.-.+..++.. ........+ ...+|.|+..+...
T Consensus 685 Aa~ALanLt~~--s~~~~~~ii~~~g~I~~Lv~LL~s~------------------------------------------ 720 (810)
T 3now_A 685 CAGALAIITSV--SVKCCEKILAIASWLDILHTLIANP------------------------------------------ 720 (810)
T ss_dssp HHHHHHHHHHH--CHHHHHHHHTSTTHHHHHHHHHTCS------------------------------------------
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHcCCHHHHHHHHCCC------------------------------------------
Confidence 99888888762 111222333 24666776655421
Q ss_pred ccccchhhhhhHHHHHHHHHhhhch---hhH-HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhh
Q 013663 360 DIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~ 421 (438)
+..+|..|..++..++..-++ .+. ...++.+...++..++.+.+.++.|+.+|..+.+
T Consensus 721 ----d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 721 ----SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp ----SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 245688899999999874332 111 3367777777765533348899999999999876
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.29 E-value=7.3e-09 Score=103.08 Aligned_cols=331 Identities=14% Similarity=0.051 Sum_probs=226.1
Q ss_pred cCCCCHHHHHHHHHHHHHhhcC----------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH-
Q 013663 25 ISPSSTADKSQIWQQLQQYSQF----------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY- 93 (438)
Q Consensus 25 ~s~d~~~~r~~A~~~L~~~~~~----------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~- 93 (438)
.++|.. +|..|-..|.++... ++.+..+...|.+ +.++.+|..|+..|++... .++.+..
T Consensus 27 ~~~~~~-v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~L~~ls~------~~~~~~~i 97 (529)
T 1jdh_A 27 NDEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSH------HREGLLAI 97 (529)
T ss_dssp TCSCHH-HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT------SHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHc------CchhHHHH
Confidence 356777 999999999887642 3556677777864 5689999999999988532 2223332
Q ss_pred ----HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cc--hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 94 ----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 94 ----i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~--w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
....+++.+.++++.++..++.++..++..... .. -.+.+|.+++.+.++++..+..+..+|..++...+..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 334677778888999999999999999986421 11 2468899999999988899999988998887643221
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCC-HHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVC 242 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~ 242 (438)
-. . -.-...++.+++.+.+.+ ..++..+..++..+... ++ ....+ ...++.+..++.++++.++..++
T Consensus 178 ~~-~------i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 178 KL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HH-H------HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HH-H------HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 00 0 011235677777777654 44566778888777642 22 11111 24677788888888899999999
Q ss_pred HHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccCcChhhh
Q 013663 243 AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDE 321 (438)
Q Consensus 243 ~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~ 321 (438)
.++..+....+.. .....+++.+++.+.+.+++++..|...+..++... .+...... ...+|.++..+...
T Consensus 249 ~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~---- 320 (529)
T 1jdh_A 249 WTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRA---- 320 (529)
T ss_dssp HHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHH----
T ss_pred HHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHcc----
Confidence 9999998765443 234678888888888899999999999999987641 11111111 13455665555310
Q ss_pred hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch------hhH-HhHHHHH
Q 013663 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EIL-PTLMPVI 394 (438)
Q Consensus 322 ~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~------~~~-~~l~~~l 394 (438)
. +...+|..|..+|..++...+. .+. ...+|.+
T Consensus 321 -----------------------------------~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L 360 (529)
T 1jdh_A 321 -----------------------------------G-----DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360 (529)
T ss_dssp -----------------------------------T-----TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------------C-----CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHH
Confidence 0 0145678899999988764332 111 2357777
Q ss_pred HHHhccCCCCcchhhHHHHHHHHHHhhcc
Q 013663 395 QAKLSASGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 395 ~~~l~~~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
...+.+++ +|..|.+++.+++.++.+.
T Consensus 361 ~~lL~~~~--~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 361 VKLLHPPS--HWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHTTSTTC--CHHHHHHHHHHHHHHTTSG
T ss_pred HHHhcccc--chHHHHHHHHHHHHHhcCh
Confidence 77777754 2789999999999998753
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.27 E-value=1.7e-09 Score=115.90 Aligned_cols=275 Identities=13% Similarity=0.067 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHh----ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL----DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l----~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
..|+.++.++..++...+....+.+++.+.+.+ .+.++..+++++.+++.+.+.+.... ...+..+++
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~--------~~~l~~l~~ 493 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY--------SDVVPGLIG 493 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC--------CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh--------hHHHHHHHH
Confidence 347778888888877655445566667776666 55688999999999999998876531 134566666
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHH
Q 013663 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (438)
Q Consensus 184 ~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l 263 (438)
.+. .+.++++.||..++.+++.+..++... .++++.+++.++..+.+ +.++..|+.+|..+++.+++.+.||++.+
T Consensus 494 ~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~i 569 (963)
T 2x19_B 494 LIP-RISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANI 569 (963)
T ss_dssp HGG-GSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHH
T ss_pred HHH-hCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 433 445568889999999999998876432 24566777777777755 78999999999999999999999999999
Q ss_pred HHHHhhhhcC--CChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCC
Q 013663 264 FEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (438)
Q Consensus 264 i~~~~~~~~~--~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~ 341 (438)
++.+...+.. .+.+.+..+++.++.++.... .+...+++..+++.+...+.... .
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~------~---------------- 626 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLA------E---------------- 626 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHH------S----------------
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHH------h----------------
Confidence 9998887653 356888889999999886522 35677888888888776553110 0
Q ss_pred ccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-------------------------hhHHhHHHHHHH
Q 013663 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-------------------------EILPTLMPVIQA 396 (438)
Q Consensus 342 ~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-------------------------~~~~~l~~~l~~ 396 (438)
.. .+++ ....+....++|+.++..++. .+.+.++|.+..
T Consensus 627 ----------~~---~~~~---~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (963)
T 2x19_B 627 ----------EI---PNPS---NKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQK 690 (963)
T ss_dssp ----------SC---SCHH---HHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHH
T ss_pred ----------CC---CCHH---HHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHH
Confidence 00 0000 112234566666666666542 134555666555
Q ss_pred Hhcc--CCCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 397 KLSA--SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 397 ~l~~--~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
.++. .+ ...++.++.+++.++.++++.+.+++|.+++
T Consensus 691 ~l~~~~~~---~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~ 729 (963)
T 2x19_B 691 VLSKWLND---AQVVEAVCAIFEKSVKTLLDDFAPMVPQLCE 729 (963)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHSSSTTGGGHHHHHH
T ss_pred HHHhccCc---hHHHHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 5533 23 5789999999999999988888888887653
No 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.26 E-value=1.9e-09 Score=112.28 Aligned_cols=343 Identities=10% Similarity=0.014 Sum_probs=219.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
.+..+++.+.+++.. +|+.+...+..... ..+.++.|..+|. +.++.+|..|+..|.+.....=....-....
T Consensus 116 ~i~~lv~~L~~~~~~-~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~ 191 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQM-LKHAVVNLINYQDDAELATRAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 191 (780)
T ss_dssp ----------CCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH
T ss_pred cHHHHHHHhcCccHH-HHHHHHHHHHhhhHHHHHhCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhcc
Confidence 356777777888888 88887777764321 2456777888776 5689999999999987654210000000012
Q ss_pred HHHHHhhhhhhc-CcHHHHHHHHHHHHHHHHhhcc-Cc--hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 93 YIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI-AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 93 ~i~~~ll~~l~~-~~~~vr~~~a~~la~i~~~~~~-~~--w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
.+...|++.|.+ +++.+|..++.+|..++..... .. -...+|.|+..++++++.++..|+.+|..++...+..-.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~- 270 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM- 270 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH-
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH-
Confidence 345666777765 4899999999999998765311 11 125789999999999999999999999999976543210
Q ss_pred CCCCCCcch-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 013663 169 DVPGLAECP-INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPS-AEVRKLVCAAF 245 (438)
Q Consensus 169 ~~~~~~~~~-~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~-~~~~~~a~~~l 245 (438)
.. -...++.+++.+.+++.+++..|+.++..+....++.-.... ...++.+..++.+.+ ...+..++.++
T Consensus 271 -------~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL 343 (780)
T 2z6g_A 271 -------AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343 (780)
T ss_dssp -------HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred -------HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01 246789999999999999999999999877653322111111 123555566666544 44555677777
Q ss_pred HHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhc
Q 013663 246 NLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (438)
Q Consensus 246 ~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (438)
..+.. ++......+ ...++.++..+.+.+.+++..|+..+..++...... .....++|.|+..+..
T Consensus 344 ~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~-------- 410 (780)
T 2z6g_A 344 KVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGS-------- 410 (780)
T ss_dssp HHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTC--------
T ss_pred HHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh----hhhhhHHHHHHHHHcC--------
Confidence 77774 332221111 256788888888888899999999999888752111 1234567777666531
Q ss_pred cccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhH-HhHHHHHHHHhcc
Q 013663 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSA 400 (438)
Q Consensus 325 ~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~ 400 (438)
. .+.+|..|..+|..++..-.+ .+. ...++.+...+.+
T Consensus 411 --------------------------------~------d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 411 --------------------------------D------DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp --------------------------------S------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred --------------------------------C------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 0 256788999999999775432 111 2345555566554
Q ss_pred -CCCCcc-hhhHHHHHHHHHHhhcch
Q 013663 401 -SGDEAW-KDREAAVLALGAIAEGCI 424 (438)
Q Consensus 401 -~~~~~w-~~r~aal~~l~~l~~~~~ 424 (438)
.+ + ..|+.|+.+|+.++.+..
T Consensus 453 ~~~---~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 453 AGD---REDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HTT---CHHHHHHHHHHHHHTTSSST
T ss_pred cCC---HHHHHHHHHHHHHHHHhcCc
Confidence 33 4 799999999999986543
No 53
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.25 E-value=1.1e-09 Score=117.35 Aligned_cols=274 Identities=11% Similarity=0.063 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-----CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-----~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (438)
..|+.++.++..++...+..-.+.+++.+.+.+.+ .++..+++++.+++.+.+.+..... ..++.++
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--------~~l~~l~ 507 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--------RQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--------HHHHHHH
Confidence 56788888888887765544456666676666654 5789999999999999888775321 3567777
Q ss_pred HHHHHhcc--CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH
Q 013663 183 PRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (438)
Q Consensus 183 ~~l~~~l~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 260 (438)
+ ++..+. |+++.||..++.+++.+..++.... ++++.+++.++..+ + +.++..|+.++..+++.+.+.+.||+
T Consensus 508 ~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 508 R-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp H-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred H-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 7 334444 4689999999999999988875432 56677777777766 3 67899999999999999988899999
Q ss_pred HHHHHHHhhhhcC--CChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCC
Q 013663 261 RNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (438)
Q Consensus 261 ~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~ 338 (438)
+.++..+...+.. .+.+.+..+++.++.++..-. .+...+++..+++.++..+...-+
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~------------------- 642 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQ------------------- 642 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 9999999888765 467888899999999876521 345677777777777665531100
Q ss_pred CCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhh---hch----------------hhHHhHHHHHHHHhc
Q 013663 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV---FGD----------------EILPTLMPVIQAKLS 399 (438)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~---~~~----------------~~~~~l~~~l~~~l~ 399 (438)
+.. .++ +.+.....+++.++.. ++. .+.+.++|.+...+.
T Consensus 643 --------------~~~-~~~------~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 701 (971)
T 2x1g_F 643 --------------ADS-KTP------AARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE 701 (971)
T ss_dssp --------------C----CH------HHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH
T ss_pred --------------cCC-CCh------hhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH
Confidence 000 000 0122344444444433 321 235567777777665
Q ss_pred cCCCCcchhhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 400 ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 400 ~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
... .+-...+.++.+++.++.+.++.+.|++|.+++
T Consensus 702 ~~~-~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~ 737 (971)
T 2x1g_F 702 MWV-EEIDVLEAACSAMKHAITNLRSSFQPMLQDLCL 737 (971)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHH
T ss_pred hcc-ccHHHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 421 115788999999999999998889999887764
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.20 E-value=5e-10 Score=97.24 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=145.9
Q ss_pred HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cch--HHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~w--~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
.....+..++.++++.+|..++.+|+.++..... ... .+.+|.+++.+.++++.++..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4456777888889999999999999999865321 111 157899999999999999999999999998654432110
Q ss_pred CCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013663 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (438)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~ 247 (438)
-.-...+|.++..+.+++..+|..|+.+++++....++.....+ ...++.+..++.++++.++..++.++..
T Consensus 92 -------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 92 -------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp -------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 01244789999999999999999999999999875543322222 2467888888888899999999999999
Q ss_pred HHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhc
Q 013663 248 LIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (438)
Q Consensus 248 l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~ 291 (438)
++...+....... ...++.+...+.+.+.+++..|...+..+++
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9976444322222 2577888888888999999999999988875
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.20 E-value=2.2e-10 Score=102.60 Aligned_cols=218 Identities=18% Similarity=0.108 Sum_probs=159.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhh-c---------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-Q---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~-~---------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l 86 (438)
+..++..+.++|.. +|..|-..|.++. . ..+.++.|..+|. +.++.+|..|+..|.+....
T Consensus 14 ~~~~~~~L~s~~~~-~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~----- 84 (252)
T 4db8_A 14 LPQMTQQLNSDDMQ-EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASG----- 84 (252)
T ss_dssp HHHHHHHHHSSCSS-HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC-----
Confidence 33444555578888 9999999995432 1 2356667777776 45699999999999987542
Q ss_pred CHhhHHH-----HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC--c--hHHHHHHHHHHhccCChhhHhHHHHHHHH
Q 013663 87 SPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDINHMEGAMDALSK 157 (438)
Q Consensus 87 ~~~~~~~-----i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~--~--w~~ll~~l~~~l~~~~~~~r~~al~~l~~ 157 (438)
+++.+.. ..+.+++.+.++++.+|..++.+++.++...... . -.+.+|.|++.+.++++.++..++.+|..
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2333332 3456777888889999999999999998653211 1 12478999999999999999999999999
Q ss_pred HHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHH
Q 013663 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAE 236 (438)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~ 236 (438)
++...+..... -.-...++.+++.+.++++.++..|+.+|++++...++.....+. ..++.+..++.+++++
T Consensus 165 l~~~~~~~~~~-------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 237 (252)
T 4db8_A 165 IASGGNEQIQA-------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237 (252)
T ss_dssp HTTSCHHHHHH-------HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSH
T ss_pred HHcCChHHHHH-------HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHH
Confidence 98755432110 012557899999999999999999999999998655433222222 4678888888888899
Q ss_pred HHHHHHHHHHHHHh
Q 013663 237 VRKLVCAAFNLLIE 250 (438)
Q Consensus 237 ~~~~a~~~l~~l~~ 250 (438)
++..|+.++..++.
T Consensus 238 v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 238 IQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.15 E-value=1.5e-09 Score=94.42 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhh
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~ 90 (438)
+..+..+.+ .+.+++.. +|..|-..|.++.. ++.+..|...+. +.++.+|..|+..|.+.- +++
T Consensus 18 ~~~~~~L~~---~L~~~~~~-vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~-------~~~- 81 (211)
T 3ltm_A 18 PEKVEMYIK---NLQDDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DER- 81 (211)
T ss_dssp GGGHHHHHH---HTTCSSHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHC-------CGG-
T ss_pred HhHHHHHHH---HHcCCCHH-HHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CHH-
Confidence 444455544 44578888 99999999998765 566677888776 568999999998887641 222
Q ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCC
Q 013663 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (438)
....+++.+.++++.||..++.+++.+.. ++.++.|...+.++++.+|..++.+|+.+-.
T Consensus 82 ---~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 141 (211)
T 3ltm_A 82 ---AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 141 (211)
T ss_dssp ---GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred ---HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 23556677889999999999999998743 3567888888899999999999999987621
Q ss_pred CCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
...++.+...+.++++.||..|+.+|+.+-. +..++.+..+++++++.+|..+.++|..+..
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3466788889999999999999999988732 2344556666677889999999999998876
Q ss_pred hCc
Q 013663 251 VRP 253 (438)
Q Consensus 251 ~~~ 253 (438)
..+
T Consensus 204 ~~~ 206 (211)
T 3ltm_A 204 FNH 206 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.14 E-value=1.7e-08 Score=100.48 Aligned_cols=332 Identities=13% Similarity=0.016 Sum_probs=202.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhc-C---------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 20 LLEQQISPSSTADKSQIWQQLQQYSQ-F---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 20 ~l~~~~s~d~~~~r~~A~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
++.-+.+++.. +|..+...|..+.. + .+.+..+..++.+ +.+...+..++.+|++.-. +++
T Consensus 148 L~~ll~~~~~~-~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~~~~~~a~~~L~~l~~------~~~ 218 (529)
T 1jdh_A 148 MVALLNKTNVK-FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVLKVLSV------CSS 218 (529)
T ss_dssp HHHGGGCCCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT------STT
T ss_pred HHHHHhcCCHH-HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh--CChHHHHHHHHHHHHHHhc------Ccc
Confidence 33334445555 77777777766543 2 3456677787875 5566777777777776532 233
Q ss_pred hHHHH-----HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccc
Q 013663 90 NQQYI-----KSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 90 ~~~~i-----~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~-~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (438)
.+..+ ...+++.+.++++.+++.++.+++.++...+ ...-.+++|.+.+.+.+.++.++..++.+|..++..-+
T Consensus 219 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 33333 3456666777889999999999999987642 23346899999999999999999999999999987543
Q ss_pred cccccCCCCCCcchhhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHcccchh--hHHhH--HHHHHHHHHhhCCCC-HH
Q 013663 164 QVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSA--LFVSM--DQYLQGLFLLSNDPS-AE 236 (438)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~--~~~~~--~~ll~~l~~~~~~~~-~~ 236 (438)
..... -.-...++.+++.+.+ .+..++..|+.+++++....++. ....+ ...++.+..++.+++ +.
T Consensus 299 ~~~~~-------~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 299 KNKMM-------VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp HHHHH-------HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHHHH-------HHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence 21100 0113367788888865 34799999999999997654431 11111 134677777777665 68
Q ss_pred HHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHH----------------------HhhccC
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWH----------------------SYFEAQ 293 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~----------------------~~~~~~ 293 (438)
++..++.++..++...... .... ..+++.++..+++.+.++|..|.-.+. .++..+
T Consensus 372 v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 372 LIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 9999999999988532221 2222 256677777666656666665543332 222210
Q ss_pred CChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHH
Q 013663 294 LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA 373 (438)
Q Consensus 294 ~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~ 373 (438)
.....+.. ..+++.++..+.. . ...+|..|..
T Consensus 451 ~~~~~l~~--~~~v~~l~~ll~~----------------------------------------~------~~~v~~~a~~ 482 (529)
T 1jdh_A 451 HNRIVIRG--LNTIPLFVQLLYS----------------------------------------P------IENIQRVAAG 482 (529)
T ss_dssp HHHHHHHH--TTCHHHHHHGGGC----------------------------------------S------CHHHHHHHHH
T ss_pred hHHHHHhc--cCCccHHHHHHcC----------------------------------------C------chHHHHHHHH
Confidence 00000000 0122333332210 1 2457888999
Q ss_pred HHHHHHhhhch-hhH--HhHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Q 013663 374 ALDVLSNVFGD-EIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (438)
Q Consensus 374 ~l~~l~~~~~~-~~~--~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l 419 (438)
+|..++..-+. ..+ ...++.+...+.+++ ...|+.|..++..+
T Consensus 483 ~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~---~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 483 VLCELAQDKEAAEAIEAEGATAPLTELLHSRN---EGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS---HHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHcCChHHHHHHhcCCC---HHHHHHHHHHHHhc
Confidence 98888743111 111 235677778888887 88999999988766
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.13 E-value=2.8e-08 Score=103.40 Aligned_cols=279 Identities=14% Similarity=0.184 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-C------C-cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-F------P-DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~------p-~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~ 82 (438)
++....+..++..+...+.+ .++.|...+..+.. . + ++...+...+.+ +.++ .-|+..+.....+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~---~~a~~~~~~~~~~~ 83 (986)
T 2iw3_A 10 QQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKD--KKTA---ANAMQAVAHIANQS 83 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTS--HHHH---HHHHHHHHHHTCTT
T ss_pred cchHHHHHHHHhhccccchh-HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhc--cCCH---HHHHHHHHHHHHhc
Confidence 34555666666666555555 67777777766543 1 1 122223333321 2222 55666665544332
Q ss_pred hccCCHhhHHHH---HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC-ChhhHhHHHHHHHHH
Q 013663 83 YKSMSPSNQQYI---KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKI 158 (438)
Q Consensus 83 w~~l~~~~~~~i---~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l 158 (438)
...+....++ ...++..+.+....||.++..++..|++..++..-+.++|.|+..+.+. .|..+.+|+.++..+
T Consensus 84 --~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 84 --NLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp --TCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred --CCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1222223333 4666777778889999999999999999887777789999999999765 699999999999999
Q ss_pred HhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc-hhhHHhHHHHHHHHHHhhCCCCHHH
Q 013663 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEV 237 (438)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~ 237 (438)
++..+..+. ..+++++|.+..++.|..++|+.+|.+++..++..+. .++.+.++.++.. +.+|+.
T Consensus 162 ~~~~~~~~~--------~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~----~~~p~~-- 227 (986)
T 2iw3_A 162 VDAAKDQVA--------LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQC----IADPTE-- 227 (986)
T ss_dssp HHHSHHHHH--------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHH----HHCTTH--
T ss_pred HHHhHHHHH--------HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHH----hcChhh--
Confidence 998887653 4689999999999999999999999999999998775 3455555555554 455542
Q ss_pred HHHHHHHHHHHHhh-C-cccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhcc
Q 013663 238 RKLVCAAFNLLIEV-R-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (438)
Q Consensus 238 ~~~a~~~l~~l~~~-~-~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 314 (438)
.-+|+..+... + .+.=.|-+.-++|++...+......++.++.-.+..+|..=..+....+|++.++|.+-+..
T Consensus 228 ---~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~ 303 (986)
T 2iw3_A 228 ---VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNF 303 (986)
T ss_dssp ---HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHT
T ss_pred ---hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHh
Confidence 23444444432 1 12223556678899999998888888888877777776653355778999999999987644
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.13 E-value=1.8e-09 Score=93.88 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=146.4
Q ss_pred hcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHh
Q 013663 44 SQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 44 ~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~ 123 (438)
...|+.+..|...|. +.++.+|..|+..|...- +++ ....|++.+.++++.+|..++.+++.+..
T Consensus 15 ~~~~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~-------~~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~- 79 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQ---DDSYYVRRAAAYALGKIG-------DER----AVEPLIKALKDEDAWVRRAAADALGQIGD- 79 (211)
T ss_dssp -CCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-------CGG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCC-
T ss_pred hcCHhHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-------Ccc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence 346777888888886 578999999998887641 122 33556778888999999999999998742
Q ss_pred hccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHH
Q 013663 124 GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (438)
Q Consensus 124 ~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~ 203 (438)
++.++.|...+.++++.+|..++.+|+.+.. ...++.+...+.++++.||..|+.+
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------------~~~~~~L~~~l~d~~~~vr~~a~~a 135 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------------ERAVEPLIKALKDEDWFVRIAAAFA 135 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------GGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4567888888999999999999999987621 3456788889999999999999999
Q ss_pred HHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHH
Q 013663 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (438)
Q Consensus 204 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~ 283 (438)
|+.+-.. ..++.+..+++|+++.+|..++++|..+.. +..++.+...+++.++.||..|.
T Consensus 136 L~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~ 195 (211)
T 3ltm_A 136 LGEIGDE----------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAV 195 (211)
T ss_dssp HHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHcCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHH
Confidence 9887321 234456666788999999999999998742 56777777777888999999999
Q ss_pred HHHHHhhcc
Q 013663 284 EFWHSYFEA 292 (438)
Q Consensus 284 ~~~~~~~~~ 292 (438)
+.+..+...
T Consensus 196 ~aL~~~~~~ 204 (211)
T 3ltm_A 196 NYLETHKSF 204 (211)
T ss_dssp HHHHC----
T ss_pred HHHHhcCCC
Confidence 988877654
No 60
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.12 E-value=2e-08 Score=101.54 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=195.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHh-
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL- 140 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l- 140 (438)
+.+...|+++-..+..... -+++....+-+.+.+-+.++++.+|..+..+++.|.. +.-.+.++|.+.+++
T Consensus 85 s~~~~~Krl~YL~l~~~~~-----~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVN-----SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILV 156 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCC-----CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc-----CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHh
Confidence 6677778777777765432 3455555667788888899999999999999998854 334578899999999
Q ss_pred -ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH
Q 013663 141 -DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (438)
Q Consensus 141 -~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (438)
.+.++.+|..|+.++..+++..|+.+. .+.+++.+.+.+.|.++.|+.+|+.++..+...-|+.+.+.+
T Consensus 157 ~~d~~~~VRK~A~~al~kl~~~~p~~~~----------~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 226 (621)
T 2vgl_A 157 AGDTMDSVKQSAALCLLRLYRTSPDLVP----------MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 226 (621)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHCGGGCC----------CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhChhhcC----------chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 888999999999999999997776432 136788888999999999999999999999887776665666
Q ss_pred HHHHHHHHHhhCC-------------CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhc---------CCCh-
Q 013663 220 DQYLQGLFLLSND-------------PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK---------DTDD- 276 (438)
Q Consensus 220 ~~ll~~l~~~~~~-------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~---------~~~~- 276 (438)
+.+++.+.+++.. +++..+..+++.+..+...........+..+++-++..+. +.+.
T Consensus 227 ~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~ 306 (621)
T 2vgl_A 227 SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAK 306 (621)
T ss_dssp HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchH
Confidence 6666666655422 1577787887777766532211222222233333332221 1122
Q ss_pred -HHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 013663 277 -DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (438)
Q Consensus 277 -~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~ 355 (438)
.|...|+..+..+.. ..+.+...+..+.+.+..
T Consensus 307 ~aVl~ea~~~i~~l~~-------~~~~~~~~~~~L~~~L~~--------------------------------------- 340 (621)
T 2vgl_A 307 NAVLFEAISLIIHHDS-------EPNLLVRACNQLGQFLQH--------------------------------------- 340 (621)
T ss_dssp HHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHSSC---------------------------------------
T ss_pred HHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHhcC---------------------------------------
Confidence 555566655555432 123444455555544421
Q ss_pred CCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhc-cCCCCcchhhHHHHHHHHHHhh
Q 013663 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 356 ~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~-~~~~~~w~~r~aal~~l~~l~~ 421 (438)
...++|..|...|..++...+. .++....+.+...+. ++| ...|.-++-.+..++.
T Consensus 341 -------~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d---~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 341 -------RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD---VSVRQRAVDLLYAMCD 398 (621)
T ss_dssp -------SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHCC
T ss_pred -------CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHHcC
Confidence 0246799999999999987763 455666667777777 777 7789999988888775
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.10 E-value=3.8e-09 Score=91.01 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcC
Q 013663 26 SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA 105 (438)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~ 105 (438)
++|.. +|..|-..|..+.. +..+..|...+. +.++.+|..|+..|.+.- +++ ....++..+.++
T Consensus 25 ~~~~~-vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~-------~~~----~~~~L~~~l~d~ 88 (201)
T 3ltj_A 25 DDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DER----AVEPLIKALKDE 88 (201)
T ss_dssp CSCHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-------CGG----GHHHHHHHTTCS
T ss_pred CCCHH-HHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CHH----HHHHHHHHHcCC
Confidence 44444 55555555554443 233333444442 334555555554443320 111 112333344445
Q ss_pred cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHH
Q 013663 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l 158 (438)
++.||..++.+++.+.. ++.++.+...+.++++.+|..++.+|+.+
T Consensus 89 ~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp SHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55555555555544321 12344444444444555555555555443
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.09 E-value=1.5e-09 Score=94.12 Aligned_cols=189 Identities=18% Similarity=0.068 Sum_probs=140.7
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH-----HHHHhhhhhhcCcHHHHHHHHHHHHHHH
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVV 121 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~-----i~~~ll~~l~~~~~~vr~~~a~~la~i~ 121 (438)
+++++.+..++. +.++.+|..|+..|++.... +++.+.. ....+++.|.++++.+|..++.+++.++
T Consensus 11 ~~~~~~l~~LL~---s~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 11 GSELPQMVQQLN---SPDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp --CHHHHHHHTT---CSCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHhc---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345667777775 67899999999999887532 3333332 3456778888889999999999999998
Q ss_pred Hhhcc--C--chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHH
Q 013663 122 QLGGI--A--GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLR 197 (438)
Q Consensus 122 ~~~~~--~--~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr 197 (438)
..... . ...+.+|.++..++++++.++..|+.+|..++...+..... -.-...++.+++.+.+++..++
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~ll~~~~~~v~ 155 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-------VIDAGALPALVQLLSSPNEQIL 155 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH-------HHHcCcHHHHHHHHcCCCHHHH
Confidence 54321 1 11347899999999999999999999999998755442110 0124578999999999999999
Q ss_pred HHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 198 KLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
..|+.+|.++....++.-.... ...++.+..++.+++++++..++.+|..+++
T Consensus 156 ~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999876443221111 2467788888888899999999999988753
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.08 E-value=5.3e-09 Score=90.07 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=116.9
Q ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc
Q 013663 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (438)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~ 126 (438)
|+....++..|. +.++.+|..|+..|...- +++ ....|++.+.++++.+|..++.+++.+..
T Consensus 13 ~~~~~~~i~~L~---~~~~~vr~~A~~~L~~~~-------~~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIG-------DER----AVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHHC-------CGG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred CcchHHHHHHhc---CCCHHHHHHHHHHHHhcC-------Chh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 344556666665 689999999998887641 112 23556777888999999999999987742
Q ss_pred CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
++.++.+...+.++++.+|..++.+|+.+.. ...++.+...+.++++.||..|+.+++.
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------------ERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3567888888999999999999999987521 3356778888899999999999999988
Q ss_pred HHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 207 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
+-.. ..++.+..++.|+++.+|..++++|..+.
T Consensus 134 ~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 134 IGDE----------RAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HTCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred hCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7431 23444566677888899999999988884
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.06 E-value=3.7e-08 Score=100.61 Aligned_cols=270 Identities=12% Similarity=0.088 Sum_probs=189.4
Q ss_pred HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccC
Q 013663 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI----AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSD 169 (438)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~----~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (438)
...|++.|.++++.+|..++.+|+.++..... -.-++.++.+++.+.++ ++..+..|+.+|..++..-.....
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~-- 93 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-- 93 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH--
Confidence 45667778888999999999999999976421 12247889999998865 788999999999988765332100
Q ss_pred CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
-.-...++.+++.+.+++..++..|+.+|.++....+....... ...++.+..++.+++++++..++.+|..+
T Consensus 94 ------i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 94 ------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp ------HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred ------HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 01235789999999999999999999999999876432222121 25678888888888888999999999988
Q ss_pred HhhCcccccccH-HHHHHHHhhhhcCC-ChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccc
Q 013663 249 IEVRPSFLEPHL-RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (438)
Q Consensus 249 ~~~~~~~~~~~~-~~li~~~~~~~~~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~ 326 (438)
+...++.-.... ...++.++..+++. .+.++..+...+..++..+.....+.. ...++.++..+...
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~--~g~l~~L~~ll~~~--------- 236 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE--AGGMQALGLHLTDP--------- 236 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH--TTHHHHHHTTTTCS---------
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH--CCCHHHHHHHHhcC---------
Confidence 864332111111 24566666666543 466777888888888765322221111 23566776665311
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch-hhHHhHHHHHHHHhccCCCCc
Q 013663 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEA 405 (438)
Q Consensus 327 ~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~ 405 (438)
...+|..|..+|..++...+. .....++|.+...+.+.+
T Consensus 237 -------------------------------------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d--- 276 (644)
T 2z6h_A 237 -------------------------------------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD--- 276 (644)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC---
T ss_pred -------------------------------------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC---
Confidence 135678899999999876544 344577888888888887
Q ss_pred chhhHHHHHHHHHHhhcc
Q 013663 406 WKDREAAVLALGAIAEGC 423 (438)
Q Consensus 406 w~~r~aal~~l~~l~~~~ 423 (438)
+..|+.+..+|+.++.+.
T Consensus 277 ~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 277 INVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999998754
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.02 E-value=2.7e-07 Score=89.99 Aligned_cols=340 Identities=12% Similarity=0.068 Sum_probs=213.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhc-CC---------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 20 LLEQQISPSSTADKSQIWQQLQQYSQ-FP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 20 ~l~~~~s~d~~~~r~~A~~~L~~~~~-~p---------~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
++..+.++|.. +|..|...|..+.. ++ +.++.|..+|. +.++.++..|+..|+|.... +++
T Consensus 7 lv~~L~s~~~~-~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~~~~~A~~aL~nLa~~-----~~~ 77 (457)
T 1xm9_A 7 AVQYLSSQDEK-YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SPNQNVQQAAAGALRNLVFR-----STT 77 (457)
T ss_dssp HHHHHHSSCTH-HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT---SSCHHHHHHHHHHHHHHHSS-----CHH
T ss_pred HHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC-----CHH
Confidence 34444468888 99999999998764 32 34566777775 57889999999999987542 466
Q ss_pred hHHHHH-----HHhhhhhh-cCcHHHHHHHHHHHHHHHHhhcc-C-chHHHHHHHHHHh--------ccC--------Ch
Q 013663 90 NQQYIK-----SELLPCLG-AADRHIRSTVGTIVSVVVQLGGI-A-GWLELLQALVTCL--------DSN--------DI 145 (438)
Q Consensus 90 ~~~~i~-----~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~-~-~w~~ll~~l~~~l--------~~~--------~~ 145 (438)
.+..|. ..|++.|. ++++.++..++.+|..++..+.. . -..+.+|.|++.+ .++ ++
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 776664 46788888 77899999999999999976321 1 1237888898888 222 34
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC------CCHHHHHHHHHHHHHHHccc----c---
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGSVNQFIMLM----P--- 212 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~al~~l~~~~~~~----~--- 212 (438)
.+...|+++|..++.. +.. ...+ . ..+..++.++..+.+ .+.+++..|+.++.++.... +
T Consensus 158 ~v~~~a~~aL~nLs~~-~~~-~~~i---~--~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSA-DAG-RQTM---R--NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp HHHHHHHHHHHHHTTS-HHH-HHHH---T--TSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred HHHHHHHHHHHHHccC-HHH-HHHH---H--HcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 4556999999999986 432 1100 0 012567777766653 34556666666665543110 0
Q ss_pred -------------------------------------------hhhHHh-HHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 013663 213 -------------------------------------------SALFVS-MDQYLQGLFLLSN-DPSAEVRKLVCAAFNL 247 (438)
Q Consensus 213 -------------------------------------------~~~~~~-~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~ 247 (438)
+..... -...++.+..++. ..++.++..++.++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 000000 0234455555554 3468899999999999
Q ss_pred HHhhCcc---cc-cccH--HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhh
Q 013663 248 LIEVRPS---FL-EPHL--RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (438)
Q Consensus 248 l~~~~~~---~~-~~~~--~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (438)
++..... .+ ...+ ...+|.+++.+.+.+++++..|...+..++..+.....+. ...+|.|+..+...+.+
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~---~~~i~~Lv~lL~~~~~~- 386 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG---NQVFPEVTRLLTSHTGN- 386 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH---HHTHHHHHHTTTSCCSC-
T ss_pred hccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH---HhhhHHHHHhccCCCCC-
Confidence 9864332 11 1112 2467888888888999999999999999987532222232 35677787777532100
Q ss_pred hhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhH--HhHHHHHHHH
Q 013663 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL--PTLMPVIQAK 397 (438)
Q Consensus 322 ~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~--~~l~~~l~~~ 397 (438)
. . ....+...+..+|..+...-++ ..+ ...++.+..+
T Consensus 387 ---------------------------------~-~-----~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L 427 (457)
T 1xm9_A 387 ---------------------------------T-S-----NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427 (457)
T ss_dssp ---------------------------------S-T-----THHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH
T ss_pred ---------------------------------C-C-----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 0 0 0112333555666666544333 112 3467777788
Q ss_pred hccC-CCCcchhhHHHHHHHHHHhh
Q 013663 398 LSAS-GDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 398 l~~~-~~~~w~~r~aal~~l~~l~~ 421 (438)
+.++ + -+.++.|...|..+..
T Consensus 428 ~~~~~~---~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 428 CRSSAS---PKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHCTTC---HHHHHHHHHHHHTTSS
T ss_pred HcCCCc---HHHHHHHHHHHHHHHc
Confidence 8777 5 7888888888887663
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.02 E-value=4.8e-08 Score=89.00 Aligned_cols=151 Identities=17% Similarity=0.057 Sum_probs=115.4
Q ss_pred HHhhh-hhhcCcHHHHHHHHHHHHHHHHhhccCch----HHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccC
Q 013663 96 SELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSD 169 (438)
Q Consensus 96 ~~ll~-~l~~~~~~vr~~~a~~la~i~~~~~~~~w----~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (438)
..+++ +|.++++.+|..++.+|+.++...+..++ .+.+|.|++.+++ ++..++..|+++|+.++...+...+.
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~- 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ- 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH-
Confidence 45677 88889999999999999999976432111 1478888888885 47889999999999999876653210
Q ss_pred CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
......+|.+...+.+++..++..|+.++..+...-++.....++ ..++.|+.++.+++++++..++.++..+
T Consensus 163 ------~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 163 ------FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp ------HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred ------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 012357899999999999999999999999988764432222221 4678888888888899999999999999
Q ss_pred HhhCc
Q 013663 249 IEVRP 253 (438)
Q Consensus 249 ~~~~~ 253 (438)
+...+
T Consensus 237 ~~~~~ 241 (296)
T 1xqr_A 237 VTDFP 241 (296)
T ss_dssp HTTCH
T ss_pred HhCCh
Confidence 97643
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.99 E-value=8.9e-07 Score=85.52 Aligned_cols=353 Identities=12% Similarity=0.028 Sum_probs=200.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCc---------HHHHHHHHHhhccC---------CCHHHHHHHHHHH
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPD---------FNNYLAFILARAEG---------KSVEIRQAAGLLL 75 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~---------~~~~l~~il~~~~~---------~~~~~R~~A~~~L 75 (438)
++.+..++..+.+.|.+ . .-..|..+..+|. .++.|.++|..... .+++.|+-|++.|
T Consensus 31 ~~~~~~l~~~~~~~~~~-~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 31 VEMVYSLLSMLGTHDKD-D---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp --------------CCH-H---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHH-H---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 34455566666566655 2 4455666666554 35667888874211 3489999999999
Q ss_pred HHHHHhhhccCCHhhHH-HHH----------HHhhhhhhcCc-------HHHHH-------HHHHHHHHHHHhhc-cCch
Q 013663 76 KNNLRTAYKSMSPSNQQ-YIK----------SELLPCLGAAD-------RHIRS-------TVGTIVSVVVQLGG-IAGW 129 (438)
Q Consensus 76 k~~i~~~w~~l~~~~~~-~i~----------~~ll~~l~~~~-------~~vr~-------~~a~~la~i~~~~~-~~~w 129 (438)
.|++...=.. ....++ .+. ..+++.+.... ..++. +++.+|++|+.... .+..
T Consensus 107 ~ni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i 185 (458)
T 3nmz_A 107 HNIIHSQPDD-KRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 185 (458)
T ss_dssp HHHHHHSCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHccCcch-hHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9998754111 111000 111 12333333210 11433 66677777753321 1111
Q ss_pred --HHHHHHHHHHhcc-----------CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHH
Q 013663 130 --LELLQALVTCLDS-----------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (438)
Q Consensus 130 --~~ll~~l~~~l~~-----------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 196 (438)
...++.|+..+.. .++..+..|.++|..++..-+..-. .+ ......+|.|++.+.+++.++
T Consensus 186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~-----~i-~~~~GaIp~LV~LL~s~~~~v 259 (458)
T 3nmz_A 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA-----TL-CSMKGCMRALVAQLKSESEDL 259 (458)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHH-----HH-HHCHHHHHHHHHGGGCSCHHH
T ss_pred HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHH-----HH-HHcCCcHHHHHHHHhCCCHHH
Confidence 1345556665531 2356789999999999975442100 00 012557999999999999999
Q ss_pred HHHHHHHHHHHHcccchhhHHhHH--HHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhCcccccccH--HHHHHHHhhhh
Q 013663 197 RKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVN 271 (438)
Q Consensus 197 r~~al~~l~~~~~~~~~~~~~~~~--~ll~~l~~~-~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~li~~~~~~~ 271 (438)
+..|+.+|.++...-.......+. ..++.|..+ ....++.++..++.++..++....+.=.... ...++.++..+
T Consensus 260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 999999999986531111112211 345666664 4556788999999999999874432111111 35677777776
Q ss_pred cCCCh----HHHhHHHHHHHHhhcc-CCChhhHHhhH-HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCcccc
Q 013663 272 KDTDD----DVALEACEFWHSYFEA-QLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (438)
Q Consensus 272 ~~~~~----~v~~~a~~~~~~~~~~-~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~ 345 (438)
.+.++ +++..|.-.+..++.. ....+...... ...+|.|+..+...
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~---------------------------- 391 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---------------------------- 391 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS----------------------------
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC----------------------------
Confidence 65433 5888888777777641 00111111111 24577777766521
Q ss_pred CCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--h-hH-HhHHHHHHHHhccCCCCcchhhHHHHHHHHHHhh
Q 013663 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--E-IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 346 ~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~-~~-~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~l~~ 421 (438)
...+++.|..+|..++...++ . +. ...+|.+..++.+++ .+.|+.|..+|..++.
T Consensus 392 ------------------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~---~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 392 ------------------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH---KMIAMGSAAALRNLMA 450 (458)
T ss_dssp ------------------CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS---HHHHHHHHHHHHHHHT
T ss_pred ------------------ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHc
Confidence 134577789999999854333 2 22 346788888888887 8999999999999998
Q ss_pred cchhh
Q 013663 422 GCIKG 426 (438)
Q Consensus 422 ~~~~~ 426 (438)
+.+.+
T Consensus 451 ~~p~k 455 (458)
T 3nmz_A 451 NRPAK 455 (458)
T ss_dssp CCSCC
T ss_pred CCHhh
Confidence 76544
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.92 E-value=4.6e-07 Score=94.38 Aligned_cols=281 Identities=16% Similarity=0.186 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHhh-hc-cCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc--Cc---hHHHHHHHHH
Q 013663 66 EIRQAAGLLLKNNLRTA-YK-SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AG---WLELLQALVT 138 (438)
Q Consensus 66 ~~R~~A~~~Lk~~i~~~-w~-~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--~~---w~~ll~~l~~ 138 (438)
.-|.-|+..+-..+... .. .++ ..+...+.+.+.+.... ..++.+++.|++..+. .. +-.++|.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVP----EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCC----HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccccccc----hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 33444555555555432 11 122 24556666666664333 8888999999976521 22 2345788888
Q ss_pred HhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccchhhHH
Q 013663 139 CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFV 217 (438)
Q Consensus 139 ~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~ 217 (438)
.+.+....+|..|-.++..++..++.. .+..++|.++..+.+. .++.+..|++++..++...|+.+..
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~-----------a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~ 171 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVNPV-----------AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL 171 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSCGG-----------GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCCHH-----------HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence 888888899999999999999999874 3688999999999765 6999999999999999988988888
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-cccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCCh
Q 013663 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH 296 (438)
Q Consensus 218 ~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~ 296 (438)
.++.+++.+...+.|..++|++++.+++..++... ...+.| ++|.++.++.++++ ...++. .++..--..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~----~~~~~~~~~~~p~~--~~~~~~---~l~~~tfv~ 242 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER----FIPSLIQCIADPTE--VPETVH---LLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG----GHHHHHHHHHCTTH--HHHHHH---HHTTCCCCS
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh----hHHHHHHHhcChhh--hHHHHH---HhhcCeeEe
Confidence 99999999999999999999999999999998743 344545 45555566655532 334444 333320001
Q ss_pred hhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHH
Q 013663 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (438)
Q Consensus 297 ~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~ 376 (438)
+--.|.+.-++|.|.+.+.... -..++.+.-.++
T Consensus 243 ~v~~~~l~~~~p~l~r~l~~~~----------------------------------------------~~~~r~~~~~~~ 276 (986)
T 2iw3_A 243 EVTPATLSIMVPLLSRGLNERE----------------------------------------------TGIKRKSAVIID 276 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSS----------------------------------------------HHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHhhhccCc----------------------------------------------chhheeeEEEEc
Confidence 1126788889999988886321 234566778889
Q ss_pred HHHhhhch-----hhHHhHHHHHHHHhcc-CCCCcchhhHHHHHHHHHHhh
Q 013663 377 VLSNVFGD-----EILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAE 421 (438)
Q Consensus 377 ~l~~~~~~-----~~~~~l~~~l~~~l~~-~~~~~w~~r~aal~~l~~l~~ 421 (438)
.|+.-+.+ .|+|.|+|-+...... .+ +..|+.+-.++..+..
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~---pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD---PEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCS---HHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhhccCC---HHHHHHHHHHHHHHHH
Confidence 99988866 6789999999887655 34 8899999888888754
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.79 E-value=1.6e-05 Score=78.67 Aligned_cols=349 Identities=12% Similarity=0.022 Sum_probs=220.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-C---------CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccC
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-F---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l 86 (438)
+..++..+.+++.. ++..|...|..+.. + .+.++.|..+|. +.++.+|..|+..|+|.... -
T Consensus 50 i~~LV~~L~s~~~~-~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~---s~~~~vq~~Aa~AL~nLa~~----~ 121 (584)
T 3l6x_A 50 LPEVIAMLGFRLDA-VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD---HPKKEVHLGACGALKNISFG----R 121 (584)
T ss_dssp HHHHHHHTTCSCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG---CSSHHHHHHHHHHHHHHTSS----S
T ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC---CCCHHHHHHHHHHHHHHHcc----C
Confidence 34445555577777 88888889987763 2 345677778776 57899999999999987431 0
Q ss_pred CHhhHHHHH-----HHhhhhhhc-CcHHHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHhc-----------------
Q 013663 87 SPSNQQYIK-----SELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI--AGWLELLQALVTCLD----------------- 141 (438)
Q Consensus 87 ~~~~~~~i~-----~~ll~~l~~-~~~~vr~~~a~~la~i~~~~~~--~~w~~ll~~l~~~l~----------------- 141 (438)
+++.+..|. ..|+++|.+ .+..++..++.+|..++..+.. .--.+.+|.|++.+.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 355666554 457777876 5788999999999999875421 111345677766541
Q ss_pred -cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc------CCCHHHHHHHHHHHHHHHcccch-
Q 013663 142 -SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ------SPHTSLRKLSLGSVNQFIMLMPS- 213 (438)
Q Consensus 142 -~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~------~~~~~vr~~al~~l~~~~~~~~~- 213 (438)
..++.++..|..+|..++..-+.. +. .+ .....+++.|+..+. +.+..+...|+.+|.++......
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~-R~----~i-~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEA-RR----KL-RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHH-HH----HH-HHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHH-HH----HH-HHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 124688899999999998654321 00 00 012345556666554 25667778888888776543210
Q ss_pred -----hhH------------------HhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCc---ccccccH--HH
Q 013663 214 -----ALF------------------VSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP---SFLEPHL--RN 262 (438)
Q Consensus 214 -----~~~------------------~~~--~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~--~~ 262 (438)
.+. ..+ ...++.+..++. ..++.++..|+.+|..++.... ..+...+ ..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 000 000 234566666664 3568999999999999975321 1121122 35
Q ss_pred HHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCc
Q 013663 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (438)
Q Consensus 263 li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~ 342 (438)
.+|.++..+.+.+++++..|...+..++........+ -...+|.|+..|.....+ +..
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~--------------~~~----- 413 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQN--------------SSW----- 413 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCS--------------GGG-----
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCccc--------------ccc-----
Confidence 6888888888889999999999999998875444433 246788888877643110 000
Q ss_pred cccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhH-HhHHHHHHHHhccCCCCcchhhHHHHHHHHH
Q 013663 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (438)
Q Consensus 343 ~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~w~~r~aal~~l~~ 418 (438)
.....+...|..+|..++..-++ .+. ...+|.+..++.+.+ .+.+.+++|..++..
T Consensus 414 -------------------~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~Aa~vL~n 473 (584)
T 3l6x_A 414 -------------------NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRAAALVLQT 473 (584)
T ss_dssp -------------------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHHHHHHHHH
Confidence 00123345566667666544333 122 346777778877651 127889999999998
Q ss_pred Hhh
Q 013663 419 IAE 421 (438)
Q Consensus 419 l~~ 421 (438)
+..
T Consensus 474 l~~ 476 (584)
T 3l6x_A 474 IWG 476 (584)
T ss_dssp HHT
T ss_pred HHc
Confidence 875
No 70
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.78 E-value=1.2e-06 Score=81.84 Aligned_cols=248 Identities=13% Similarity=0.139 Sum_probs=168.1
Q ss_pred HHHHHHHHHHhhcC---------CcHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHH-
Q 013663 33 KSQIWQQLQQYSQF---------PDFNNYLAFILARA--------EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI- 94 (438)
Q Consensus 33 r~~A~~~L~~~~~~---------p~~~~~l~~il~~~--------~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i- 94 (438)
.-+|-..|.++..+ -+.++.|..+|..+ ...++.+|+.|+..|+|.-.. +++.+..+
T Consensus 49 ~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~-----~~~~k~~i~ 123 (354)
T 3nmw_A 49 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-----DVANKATLC 123 (354)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSS-----CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Confidence 44555555554432 25566777777521 123578999999999987422 23333333
Q ss_pred -----HHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc---cCch--HHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccc
Q 013663 95 -----KSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGW--LELLQALVTCL-DSNDINHMEGAMDALSKICEDIP 163 (438)
Q Consensus 95 -----~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~---~~~w--~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~ 163 (438)
...|++.|.++++.++..++.+|..++.... .... ...+|.|++.+ +++++..++.++.+|..++....
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4567778888899999999999999986421 1111 24688888864 55778889999999999887443
Q ss_pred cccccCCCCCCcchhhhHHHHHHHhccCCCH----HHHHHHHHHHHHHHcc---cchhhHHhH--HHHHHHHHHhhCCCC
Q 013663 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHT----SLRKLSLGSVNQFIML---MPSALFVSM--DQYLQGLFLLSNDPS 234 (438)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~----~vr~~al~~l~~~~~~---~~~~~~~~~--~~ll~~l~~~~~~~~ 234 (438)
.. ... + ......+|.|.+.+.+.+. +++..|+.+|.++..+ .++ ....+ ...++.|..++.+++
T Consensus 204 ~n-k~~---i--~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~g~i~~Lv~lL~~~~ 276 (354)
T 3nmw_A 204 EN-KAD---I--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKSHS 276 (354)
T ss_dssp HH-HHH---H--HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHTTTHHHHHHHHTTCSC
T ss_pred hh-hHH---H--HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHcCCHHHHHHHHcCCC
Confidence 21 000 0 0025678999999987644 5899999999887753 222 12222 135777888888888
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 235 AEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
..+++.|+.++..++...++...... ...+|.++..+++.++.++..|...+..++..
T Consensus 277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999854443322222 25788888888888999999999988888765
No 71
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.78 E-value=4.2e-07 Score=96.46 Aligned_cols=324 Identities=12% Similarity=0.083 Sum_probs=197.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHH----
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQAL---- 136 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l---- 136 (438)
+.++.++..+...++..+. |-.++.-....+.+.+++.+.+ +.+|..++.++..|+... .+..--+++..+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 3567788778877777766 6432211113444555555554 789999999999998764 222222333222
Q ss_pred -HHHhc--cCChhhHhHHHHHHHHHHhccccccccCCCCCC--------cchhhhHHHHHHHhccCCCHHHHHHHHHHHH
Q 013663 137 -VTCLD--SNDINHMEGAMDALSKICEDIPQVLDSDVPGLA--------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (438)
Q Consensus 137 -~~~l~--~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~--------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (438)
+..+. ..|.+..++-...+..+.+..... ... ++.. ...+..+++.++.++.+++.+|-..++..+.
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~-~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSD-PSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTS-CC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccC-ccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 11112 345555554444554444332222 110 0000 1356778999999999999999888888887
Q ss_pred HHHccc---------chhhHHhHHHHHHHHHHhhC-------CC----C-----HHHHHHHHHHHHHHHh-hCccccccc
Q 013663 206 QFIMLM---------PSALFVSMDQYLQGLFLLSN-------DP----S-----AEVRKLVCAAFNLLIE-VRPSFLEPH 259 (438)
Q Consensus 206 ~~~~~~---------~~~~~~~~~~ll~~l~~~~~-------~~----~-----~~~~~~a~~~l~~l~~-~~~~~~~~~ 259 (438)
.++... +..+.+.+..+++.+..-+. +. + .+.|+... .+.+.+. ..++.+..+
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence 776542 23455677788887776442 11 1 14555555 4444443 345544332
Q ss_pred HH-HHHHHHhhhhc---CCChHHHhHHHHHHHHhhccCC-Chh---hHHhhHHHHHHHHHhccCcChhhhhhccccccCC
Q 013663 260 LR-NLFEYMLQVNK---DTDDDVALEACEFWHSYFEAQL-PHE---NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (438)
Q Consensus 260 ~~-~li~~~~~~~~---~~~~~v~~~a~~~~~~~~~~~~-~~~---~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~ 331 (438)
+- .+.+.+-+.+. +.+...+..|+-.++.++|.-. ... ...++++.+++.+.+.+... +.
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~---i~--------- 504 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ---VC--------- 504 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS---TT---------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC---CC---------
Confidence 22 22233333332 2356778888888999988611 111 11245556665555443210 00
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch--hhHHhHHHHHHH--HhccCCCCcch
Q 013663 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQA--KLSASGDEAWK 407 (438)
Q Consensus 332 ~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~--~l~~~~~~~w~ 407 (438)
. ..+..+|..+..++++++..+.. .+++.+++.+.. .+.+++ .+
T Consensus 505 -------------------------~----~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~---~~ 552 (980)
T 3ibv_A 505 -------------------------R----HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTN---ER 552 (980)
T ss_dssp -------------------------T----CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCC---TT
T ss_pred -------------------------C----CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCC---hh
Confidence 0 12568899999999999999965 788999998888 777776 78
Q ss_pred hhHHHHHHHHHHhhcchhhhhhccccccc
Q 013663 408 DREAAVLALGAIAEGCIKGLYPHLSEVIF 436 (438)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 436 (438)
.|.+|..+|..+++.|+..+.+|++.|+.
T Consensus 553 V~~~a~~af~~f~~~~~~~L~~~~~~il~ 581 (980)
T 3ibv_A 553 VRPRAWYLFYRFVKSIKKQVVNYTESSLA 581 (980)
T ss_dssp THHHHHHHHHHHHHHTTTTCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhHHHHHHH
Confidence 99999999999999999999998887764
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.75 E-value=2.2e-05 Score=63.73 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=144.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhc-CCcHHH----HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH
Q 013663 21 LEQQISPSSTADKSQIWQQLQQYSQ-FPDFNN----YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (438)
Q Consensus 21 l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~~----~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~ 95 (438)
+-..++-|-=-+|++|...+-.+.+ .|+.+. .|+.++.. +.....-+--+..+..... +.|+....+.
T Consensus 37 lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k--sEaIpltqeIa~a~G~la~-----i~Pe~v~~vV 109 (253)
T 2db0_A 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK--SEAIPLTQEIAKAFGQMAK-----EKPELVKSMI 109 (253)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHH-----HCHHHHHHHH
T ss_pred HHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh--cccCchHHHHHHHHhHHHH-----hCHHHHHhhH
Confidence 3334555652289999999987765 677543 34444454 5555554444445544322 3555555555
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCc
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (438)
..+..-..-.++++|-..++++..|++.. |...+.++..+...+.++|..-|..|+.+++.+-+.-+
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~------------ 176 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF------------ 176 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH------------
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc------------
Confidence 55555555579999999999999999864 44566777778888888887788888887754432222
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
.++..++|.++.++.|.+.-||..|+++|+.++...|. ++.++...++-++|++..+....-+.++.+.-
T Consensus 177 ~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988753 44555555556778888888888888887763
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.73 E-value=2e-05 Score=63.99 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=158.5
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhh
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~ 124 (438)
+.++...++..|.. .-=.+|.-|..++-+.+.. -++..+-++..|+-.+. ++.-..-..++.+++.+++.-
T Consensus 30 d~~~l~~lI~~LDD---DlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDD---DLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp CHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhcc---HHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 34455555555532 2223666677666665443 24556667777877775 556666677899999998763
Q ss_pred ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHH
Q 013663 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (438)
|+.-...+|.++...+-+++..|.+--++|+.+....|.. +..++..+...+.+++..-|..|+..+
T Consensus 102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l------------~~~v~rdi~smltskd~~Dkl~aLnFi 168 (253)
T 2db0_A 102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML------------MASIVRDFMSMLSSKNREDKLTALNFI 168 (253)
T ss_dssp -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH------------HHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH------------HHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4455677888888888899999999999999999988863 577888888999999988899999777
Q ss_pred HHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHH
Q 013663 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (438)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~ 284 (438)
+.+.... ..++..+++.++.++.|.++-||..++++|..++..+|+ + ..++.--++-+.|.++.|....-+
T Consensus 169 ~alGen~----~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-l----Rkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 169 EAMGENS----FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-L----RKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HTCCTTT----HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-H----HHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred HHHhccC----ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-H----HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6654443 344556677788888999999999999999999998876 3 445555667778888888877777
Q ss_pred HHHHhh
Q 013663 285 FWHSYF 290 (438)
Q Consensus 285 ~~~~~~ 290 (438)
.++.+.
T Consensus 240 gL~rl~ 245 (253)
T 2db0_A 240 GISRLL 245 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.71 E-value=1.4e-06 Score=80.73 Aligned_cols=280 Identities=12% Similarity=0.020 Sum_probs=163.1
Q ss_pred hhhhhcC---cHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCC
Q 013663 99 LPCLGAA---DRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (438)
Q Consensus 99 l~~l~~~---~~~vr~~~a~~la~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (438)
.+.++++ ..+.|..+..+|..+..++ +......+++.+...+++++...|+.++..+..+.+. ++
T Consensus 31 ~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~--------- 100 (355)
T 3tjz_B 31 ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AE--------- 100 (355)
T ss_dssp GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SS---------
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HH---------
Confidence 3667764 3455667888888777765 2244678999999999999999998888888766654 22
Q ss_pred CcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCc
Q 013663 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
. +--+...|.+-++++++.+|..|+++++++..- ..++.+.+.+-+.+.|.++.||+.|+-+..++....|
T Consensus 101 --e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p 171 (355)
T 3tjz_B 101 --D-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF 171 (355)
T ss_dssp --C-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH
T ss_pred --H-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH
Confidence 1 225677889999999999999999999998542 1344566677778899999999999999999988888
Q ss_pred ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHH--------------HhccCcC-h
Q 013663 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVL--------------LSNMIYA-D 318 (438)
Q Consensus 254 ~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l--------------~~~l~~~-~ 318 (438)
+.... +++-+...+.+.+.-|...|+.++..+.+.. .. .+.++++.+ ++.+... .
T Consensus 172 e~v~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 172 DVVKR----WVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp HHHHT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred HHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 76654 4444455567788888888888888887641 11 122222222 2211110 0
Q ss_pred hhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHh
Q 013663 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL 398 (438)
Q Consensus 319 ~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 398 (438)
+|. .+..++--+.+.|.+ .+.+..+-..|..++-.+.. .+...+......+...+
T Consensus 242 ~d~-------~~~~~~~~~~l~~~L-----------------~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fL 296 (355)
T 3tjz_B 242 DED-------GSRDSPLFDFIESCL-----------------RNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFC 296 (355)
T ss_dssp ----------------------CCC-----------------CCSSHHHHHHHHHHHTC------------CCCTHHHHH
T ss_pred ccc-------hhhHHHHHHHHHHHH-----------------cCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Confidence 000 000000000111110 01234566667777666644 33344445566777778
Q ss_pred ccCCCCcchhhHHHHHHHHHHhhcchhhhhhcccccc
Q 013663 399 SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEVI 435 (438)
Q Consensus 399 ~~~~~~~w~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 435 (438)
++++ ...|++|+..+..++...++.+..+-..|.
T Consensus 297 ss~d---~niryvaLr~L~~l~~~~P~~v~~~n~~ie 330 (355)
T 3tjz_B 297 SSPK---AALRYAAVRTLNKVAMKHPSAVTACNLDLE 330 (355)
T ss_dssp HSSS---SSSHHHHHHCC-------------------
T ss_pred cCCC---chHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 8887 789999999999999887777665554443
No 75
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.70 E-value=3.4e-06 Score=91.00 Aligned_cols=200 Identities=10% Similarity=0.122 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (438)
..|+.++.++..++...+..-.+-+++.+.+.+.+ .++..+++++.+++.+.+.+.....+ ..+..+++.+
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~-------~~l~~v~~~l 500 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK-------RFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhH-------HHHHHHHHHH
Confidence 45777888888888654433344455666655543 57899999999999998766542110 2356666666
Q ss_pred HHhcc-----CCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc---
Q 013663 186 LQFFQ-----SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE--- 257 (438)
Q Consensus 186 ~~~l~-----~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~--- 257 (438)
..... ++.+-++..++.+++.+..++... ..+++.+++.++..+.++++.++..|+.+|..+++.++..+.
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~ 579 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ 579 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55432 234456667888888877665332 245677888888888888899999999999999998776664
Q ss_pred -----ccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccC
Q 013663 258 -----PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 258 -----~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
||++.++..+...+...+.+-....++.++.++......+...+++..+++.++..+.
T Consensus 580 ~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 580 PRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp TTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877766555555677787788776532234567888888887765543
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.69 E-value=5.7e-07 Score=81.88 Aligned_cols=178 Identities=10% Similarity=0.067 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHhh-ccCch--HHHHHHHHH-HhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 108 HIRSTVGTIVSVVVQLG-GIAGW--LELLQALVT-CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~-~~~~w--~~ll~~l~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
.-|..+...|..++... ..... -..+|.++. .+.++++.+|..|+++|+.++...+..-+ . -.-...+|
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~-----~--vv~~g~l~ 127 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE-----Q--VLGLGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH-----H--HHHTTHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH-----H--HHHCCCHH
Confidence 34556667777766532 11111 134577777 88899999999999999999987654210 0 01135788
Q ss_pred HHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHH
Q 013663 184 RLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (438)
Q Consensus 184 ~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 261 (438)
.|++++.+ ++..+|..|+.++++++...+....... ...++.|..++.++++.+++.++.++..++...++.......
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 88898884 5899999999999999876553222222 146677777778889999999999999999876654333333
Q ss_pred -HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 262 -NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 262 -~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.+++.++..+.+.+.+++..|+..+..++..
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 6778888888888999999999999988765
No 77
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.65 E-value=4.8e-06 Score=88.61 Aligned_cols=193 Identities=10% Similarity=0.138 Sum_probs=140.3
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcc--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC-
Q 013663 115 TIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS- 191 (438)
Q Consensus 115 ~~la~i~~~~~~~~w~~ll~~l~~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~- 191 (438)
.+|..++...+.+..+-+++.+.+.+.+ .+|..+++++.+++.|.+.+..... ...++.+++.+++.+.+
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e-------~~~l~~vi~~Ll~l~~~~ 507 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE-------KRFVVTVIKDLLDLCVKK 507 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHH-------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhH-------HHHHHHHHHHHHHhhhcc
Confidence 5565555544433344455666555553 5799999999999999988765311 24678888888887763
Q ss_pred ----CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc--------ccc
Q 013663 192 ----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL--------EPH 259 (438)
Q Consensus 192 ----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~--------~~~ 259 (438)
+...||..++.+++++.+|+... ..+++.+++.++..+.++.+.+...|+.+|..+++.+...+ .||
T Consensus 508 ~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~ 586 (1023)
T 4hat_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1023)
T ss_dssp CSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 44557778889999887776321 34577888888888887788999999999999999877666 478
Q ss_pred HHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccC
Q 013663 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 260 ~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
+++++..+......-+.+-+..+++.+++++...........++..+++.+...+.
T Consensus 587 ~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~ 642 (1023)
T 4hat_C 587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1023)
T ss_dssp HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHH
Confidence 99999888887776677777888999999988633333456677777776655443
No 78
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.64 E-value=3.5e-06 Score=82.07 Aligned_cols=310 Identities=9% Similarity=0.016 Sum_probs=187.3
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH-----HHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~ 124 (438)
++.+...|. +.++.+|..|+..|++...+ +++.+. .....|++.|.++++.++..++.++..|+...
T Consensus 4 l~~lv~~L~---s~~~~~q~~A~~~L~~l~~~-----~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLS---SQDEKYQAIGAYYIQHTCFQ-----DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHH---SSCTHHHHHHHHHHHHHTSS-----CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHHcC-----ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 345677776 45788999999999986422 233332 22356778888889999999999999999752
Q ss_pred cc--Cch--HHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc--------cC
Q 013663 125 GI--AGW--LELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF--------QS 191 (438)
Q Consensus 125 ~~--~~w--~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l--------~~ 191 (438)
.. ... .+.+|.|++.+. ++++..++.++++|..++.. +. ... ......+|.|++.+ .+
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~-------~i~~g~i~~Lv~ll~~~~s~~~~~ 146 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKE-------ELIADALPVLADRVIIPFSGWCDG 146 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THH-------HHHHHHHHHHHHHTTHHHHTCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHH-------HHHhccHHHHHHHHhccccccccC
Confidence 11 111 135889999998 78899999999999999976 32 110 12347888999988 22
Q ss_pred C--------CHHHHHHHHHHHHHHHcccchhhHHhHH---HHHHHHHHhhCC------CCHHHHHHHHHHHHHHHhhC--
Q 013663 192 P--------HTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSND------PSAEVRKLVCAAFNLLIEVR-- 252 (438)
Q Consensus 192 ~--------~~~vr~~al~~l~~~~~~~~~~~~~~~~---~ll~~l~~~~~~------~~~~~~~~a~~~l~~l~~~~-- 252 (438)
+ +..+...|+.+|.++... ++. ...+. ..++.|..++.+ .+.++...++.++..+....
T Consensus 147 ~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~ 224 (457)
T 1xm9_A 147 NSNMSREVVDPEVFFNATGCLRNLSSA-DAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224 (457)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTS-HHH-HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH
T ss_pred ccchhcccccHHHHHHHHHHHHHHccC-HHH-HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhc
Confidence 2 456677999999998876 432 11111 334444443321 33345555555544442100
Q ss_pred ------------------------------------------------cccccc-cHHHHHHHHhhhhc-CCChHHHhHH
Q 013663 253 ------------------------------------------------PSFLEP-HLRNLFEYMLQVNK-DTDDDVALEA 282 (438)
Q Consensus 253 ------------------------------------------------~~~~~~-~~~~li~~~~~~~~-~~~~~v~~~a 282 (438)
+....- +-...++.++..++ ..+++++..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a 304 (457)
T 1xm9_A 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp HSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred cCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHH
Confidence 000000 11244555555554 3467888888
Q ss_pred HHHHHHhhccCCC-hhhH-HhhH--HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCc
Q 013663 283 CEFWHSYFEAQLP-HENL-KEFL--PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (438)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~-~~~l--~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d 358 (438)
.-.+..++..... ...+ +..+ ...+|.|++.+...
T Consensus 305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----------------------------------------- 343 (457)
T 1xm9_A 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----------------------------------------- 343 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-----------------------------------------
T ss_pred HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-----------------------------------------
Confidence 8888888754211 1122 2223 24567777766421
Q ss_pred cccccchhhhhhHHHHHHHHHhhhch--hhHHhHHHHHHHHhccCCCC---cchhhHHHHHHHHHHhhcch
Q 013663 359 DDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQAKLSASGDE---AWKDREAAVLALGAIAEGCI 424 (438)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~---~w~~r~aal~~l~~l~~~~~ 424 (438)
...+++.|..+|..++..-.. .+-...+|-+...+.++++. +-....+++.+++.+..+..
T Consensus 344 -----~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~ 409 (457)
T 1xm9_A 344 -----NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409 (457)
T ss_dssp -----CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT
T ss_pred -----CHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH
Confidence 135678889999999764322 22345667777777776410 12345578888888776543
No 79
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.61 E-value=5.5e-05 Score=74.93 Aligned_cols=311 Identities=10% Similarity=0.036 Sum_probs=194.2
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH-----HHhhhhhhcCcHHHHHHHHHHHHHHHHhh
Q 013663 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----SELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~-----~~ll~~l~~~~~~vr~~~a~~la~i~~~~ 124 (438)
++.|...|. +.++.++..|+..|++...+ +.+.+..|. ..|+++|.+++..++..++.+|..|+...
T Consensus 50 i~~LV~~L~---s~~~~~q~~Aa~~L~~La~~-----~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 50 LPEVIAMLG---FRLDAVKSNAAAYLQHLCYR-----NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp HHHHHHHTT---CSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHHcC-----ChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 566778886 56789999999999876532 334444443 56788888999999999999999999742
Q ss_pred ccCch-----HHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc--------
Q 013663 125 GIAGW-----LELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-------- 190 (438)
Q Consensus 125 ~~~~w-----~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-------- 190 (438)
..... ...+|.|++.+.+ ++..+++.+..+|..++.. +.. .. .....-+|.|++.+.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~-k~-------~I~~~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSI-KM-------EIVDHALHALTDEVIIPHSGWER 192 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGG-HH-------HHHHHTHHHHHHHTHHHHHCCC-
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh-hH-------HHHhccHHHHHHHHhcccccccc
Confidence 11111 2468889999987 5677888888888888762 211 00 112344666666541
Q ss_pred ----------CCCHHHHHHHHHHHHHHHcccch---hhHH---hHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHhhC
Q 013663 191 ----------SPHTSLRKLSLGSVNQFIMLMPS---ALFV---SMDQYLQGLFLLS--NDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 191 ----------~~~~~vr~~al~~l~~~~~~~~~---~~~~---~~~~ll~~l~~~~--~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
..+..|+..|..||.++...-++ .+.. .++.++..+...+ .+.+......|+.+|..+....
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 23578999999999998765432 1111 1234444443322 2345567777887776665331
Q ss_pred ----cc--cc-------------------cc-cHHHHHHHHhhhhc-CCChHHHhHHHHHHHHhhccCCC-hhhHHhhH-
Q 013663 253 ----PS--FL-------------------EP-HLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLP-HENLKEFL- 303 (438)
Q Consensus 253 ----~~--~~-------------------~~-~~~~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~~~~-~~~~~~~l- 303 (438)
+. .+ .. +-+..++.++..++ ..+++++..|...+..++..... ...+...+
T Consensus 273 ~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~ 352 (584)
T 3l6x_A 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352 (584)
T ss_dssp HHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT
T ss_pred cccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH
Confidence 10 00 00 11345666666664 45789999999888888754111 11222233
Q ss_pred -HHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhh
Q 013663 304 -PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (438)
Q Consensus 304 -~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~ 382 (438)
...+|.|+..+... ...++..|..+|..|+..-
T Consensus 353 ~~~glp~Lv~LL~s~----------------------------------------------~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 353 QEKALSAIADLLTNE----------------------------------------------HERVVKAASGALRNLAVDA 386 (584)
T ss_dssp SHHHHHHHHHGGGCS----------------------------------------------CHHHHHHHHHHHHHHHTTC
T ss_pred HcCcHHHHHHHHcCC----------------------------------------------CHHHHHHHHHHHHHHhCCh
Confidence 35577887777421 1245778999999998765
Q ss_pred ch--hhHHhHHHHHHHHhccCCCC-----cchhhHHHHHHHHHHhhcc
Q 013663 383 GD--EILPTLMPVIQAKLSASGDE-----AWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 383 ~~--~~~~~l~~~l~~~l~~~~~~-----~w~~r~aal~~l~~l~~~~ 423 (438)
.. .+-...+|.+.+.|.+++.. +-..+.+++.+++.++.+.
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~ 434 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN 434 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC
Confidence 33 33355777777777665210 1356778888888877553
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.60 E-value=9.8e-06 Score=78.25 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=169.4
Q ss_pred HHHHHHHHhhcCC---------cHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHH---
Q 013663 35 QIWQQLQQYSQFP---------DFNNYLAFILARA--------EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI--- 94 (438)
Q Consensus 35 ~A~~~L~~~~~~p---------~~~~~l~~il~~~--------~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i--- 94 (438)
+|-..|.++...+ +.+..|..+|..+ ...++.+++.|+..|.|.-.. +++.+..+
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~-----~~~~k~~i~~~ 241 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-----DVANKATLCSM 241 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC-----CcccHHHHHHc
Confidence 7777777665433 4566677777421 123577899999999987532 22233322
Q ss_pred ---HHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-c--cCch--HHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccccc
Q 013663 95 ---KSELLPCLGAADRHIRSTVGTIVSVVVQLG-G--IAGW--LELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 95 ---~~~ll~~l~~~~~~vr~~~a~~la~i~~~~-~--~~~w--~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
...|++.|.++++.++..++.+|..++... . .... ...+|.|++.+ .++++..++.++.+|..++......
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 456778888889999999999999998641 1 1111 24678888874 5567888999999999888744321
Q ss_pred cccCCCCCCcchhhhHHHHHHHhccCCCH----HHHHHHHHHHHHHHcc---cchhhHHhH--HHHHHHHHHhhCCCCHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFFQSPHT----SLRKLSLGSVNQFIML---MPSALFVSM--DQYLQGLFLLSNDPSAE 236 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~----~vr~~al~~l~~~~~~---~~~~~~~~~--~~ll~~l~~~~~~~~~~ 236 (438)
... + ......+|.|.+.+.+.+. +++..|+.+|.++..+ .++. ...+ ...++.|..++.+++..
T Consensus 322 -k~~---I--~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~G~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 322 -KAD---I--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQTLLQHLKSHSLT 394 (458)
T ss_dssp -HHH---H--HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHSSCSCHH
T ss_pred -HHH---H--HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-HHHHHHcccHHHHHHHHcCCChH
Confidence 000 0 0024578999999987643 5899999999888753 2222 2222 14577788888888899
Q ss_pred HHHHHHHHHHHHHhhCcccccccH-HHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
+++.|+.++..++...++...... ...++.++..+...++.++..|...+..++..
T Consensus 395 v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999855444332222 25788888888888999999999998888765
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.57 E-value=2.5e-07 Score=85.70 Aligned_cols=255 Identities=12% Similarity=0.041 Sum_probs=138.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~ 95 (438)
+..++..+.++|-. .||-..-.+..+.+.|+-.....+-+.+| ++.++-+|-.|.-.|.+. .+++..+.+-
T Consensus 70 f~~v~kl~~s~d~~-lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I-------~~~~m~~~l~ 141 (355)
T 3tjz_B 70 FFAMTKLFQSNDPT-LRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQI-------TDSTMLQAIE 141 (355)
T ss_dssp HHHHHGGGGCCCHH-HHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHH-------CCTTTHHHHH
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcC-------CCHHHHHHHH
Confidence 44455567788888 99999999999887544222344444443 588899999998887765 4667777888
Q ss_pred HHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc-------cccc
Q 013663 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ-------VLDS 168 (438)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~-------~~~~ 168 (438)
..+.+++.+.++.||++|+.++..+....+ +.-..+++.+.+.+.+.++.+...|+.++..+.+.-.. .+..
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~ 220 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTR 220 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhc
Confidence 889999999999999999999998876543 22234567777778888888888888888888763221 0000
Q ss_pred C-CC-------------CCCc----chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh
Q 013663 169 D-VP-------------GLAE----CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS 230 (438)
Q Consensus 169 ~-~~-------------~~~~----~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~ 230 (438)
. .+ .+.. .....+++.+...+++.++.|..+|++++..+-. .+.. .+....+.+..++
T Consensus 221 ~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~---~~~~a~~~L~~fL 296 (355)
T 3tjz_B 221 HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK---ELAPAVSVLQLFC 296 (355)
T ss_dssp SCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHH
T ss_pred CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH---HHHHHHHHHHHHH
Confidence 0 00 0010 1124466667777788889999999988877533 2211 1112233444456
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 231 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
.++++.+|-.+++.+..++..+|..+..+-.++ ..++.|++..++..|+..+..
T Consensus 297 ss~d~niryvaLr~L~~l~~~~P~~v~~~n~~i----e~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 297 SSPKAALRYAAVRTLNKVAMKHPSAVTACNLDL----ENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp HSSSSSSHHHHHHCC-------------------------------------------
T ss_pred cCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHH----HHHccCCcHhHHHHHHHHhhh
Confidence 667788999999999999999988876555444 455677888898888865443
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.54 E-value=1.7e-05 Score=74.16 Aligned_cols=236 Identities=12% Similarity=-0.012 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCHhhHHHHH-----HHhhhhhhc-----------CcHHHHHHHHHHHHHHHHhhcc--C
Q 013663 66 EIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----SELLPCLGA-----------ADRHIRSTVGTIVSVVVQLGGI--A 127 (438)
Q Consensus 66 ~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~-----~~ll~~l~~-----------~~~~vr~~~a~~la~i~~~~~~--~ 127 (438)
....-|+..|+|.- .+++.+..+. +.|++.|.. .++.+++.++.+|..++..... .
T Consensus 47 ~~~~~A~~aL~nls------~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 47 HQICPAVCVLMKLS------FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp GTHHHHHHHHHHHH------TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHHc------CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33445677777763 2455555543 345555531 2578899999999999866421 1
Q ss_pred c---hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHHHHHH
Q 013663 128 G---WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGS 203 (438)
Q Consensus 128 ~---w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~ 203 (438)
. -..++|.|++.+.++++.++..|..+|..++..-...... . -.-...+|.+++.+ .+.+..++..|+.+
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~----~--i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~a 194 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKK----T--LREVGSVKALMECALEVKKESTLKSVLSA 194 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHH----H--HHHTTHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHH----H--HHHCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 2357999999999999999999999999998641111000 0 01134678888864 56788999999999
Q ss_pred HHHHHcccchhhHHhH--HHHHHHHHHhhCCCCH----HHHHHHHHHHHHHHh---hCcccccccH-HHHHHHHhhhhcC
Q 013663 204 VNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSA----EVRKLVCAAFNLLIE---VRPSFLEPHL-RNLFEYMLQVNKD 273 (438)
Q Consensus 204 l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~----~~~~~a~~~l~~l~~---~~~~~~~~~~-~~li~~~~~~~~~ 273 (438)
+.++....++.-.... ...++.|..++.++++ +++..++.+|..+.. ..++.-.... ...++.++..+++
T Consensus 195 L~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 9998874432111111 2456777777765432 588899988888875 2333211111 2467888888888
Q ss_pred CChHHHhHHHHHHHHhhccCCChhhHHhhH-HHHHHHHHhccC
Q 013663 274 TDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMI 315 (438)
Q Consensus 274 ~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~ 315 (438)
.+.+++..|...+..++.. ..+.....+ ...+|.|+..+.
T Consensus 275 ~~~~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIH 315 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHh
Confidence 8899999999999988742 111111122 246777776664
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.49 E-value=8.8e-06 Score=68.97 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=142.4
Q ss_pred HHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh----ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccC
Q 013663 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLG----GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (438)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~----~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (438)
....+++.+++.++.++..+-.++..+.+.. ......+++|.++..+.+.|..+...|+.|++.+.+.+|-.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~---- 109 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG---- 109 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC----
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC----
Confidence 4466778888999999999999999999873 23567889999999999999999999999999999988752
Q ss_pred CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
......+...+...+..++.-++..|...++.+ .... ..+.+++.+++++.+.+..++..++.+|..++
T Consensus 110 -----~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~-----~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 110 -----SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE-----DSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp -----HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC-----CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred -----HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc-----chHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 124566777888888889999999999999887 3221 22456677777778889999999999999999
Q ss_pred hhCc--ccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccC
Q 013663 250 EVRP--SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (438)
Q Consensus 250 ~~~~--~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~ 293 (438)
.... ..+.+ ++.=+-..+++.|+.++..|+..+-.+...+
T Consensus 179 ~~S~D~~i~~~----I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 179 NSSADSGHLTL----ILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GGCSSCCCGGG----TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccCCHHHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 7543 33433 3333334466779999999999998888774
No 84
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.47 E-value=1.2e-05 Score=68.20 Aligned_cols=159 Identities=12% Similarity=0.107 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
.+.+..+...+.+.|+.++..++.++..+.+..+..++. ..+..+++.++..+.+.+..|...|++|++.++.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-------~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-------MVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-------HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 467888888888999999999999999999998765542 3578899999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHh
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~ 289 (438)
..|-. ...+..+..++......+++-.+..+.+.++.+ .+ ....+.++.++...+++.+.+++..|+.++..+
T Consensus 105 ~vpL~-~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 105 DVPMG-SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp TCCBC-HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 87621 123445777777778888888999999999987 11 223467888888888889999999999999999
Q ss_pred hccCCChhhHHhh
Q 013663 290 FEAQLPHENLKEF 302 (438)
Q Consensus 290 ~~~~~~~~~~~~~ 302 (438)
+......+.+.+.
T Consensus 178 a~~S~D~~i~~~I 190 (265)
T 3b2a_A 178 LNSSADSGHLTLI 190 (265)
T ss_dssp GGGCSSCCCGGGT
T ss_pred hcccCCHHHHHHH
Confidence 8763333333333
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.45 E-value=3.6e-05 Score=68.02 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHHHHhh---------cCCCCHHHHHHHHHHHHHhh-cCCcHHH----HHHHHHhh-ccCCCHHHHHHHHH
Q 013663 9 PQEQGFNEICRLLEQQ---------ISPSSTADKSQIWQQLQQYS-QFPDFNN----YLAFILAR-AEGKSVEIRQAAGL 73 (438)
Q Consensus 9 ~~~~~~~~l~~~l~~~---------~s~d~~~~r~~A~~~L~~~~-~~p~~~~----~l~~il~~-~~~~~~~~R~~A~~ 73 (438)
|.+.-++++...+... .+.|-. .|-+|-+.|.+.. ..|+... .++.++.- -.+.+..+-..+..
T Consensus 31 p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k-~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~ 109 (266)
T 2of3_A 31 PTDEHISQLQTLLGNQAKVSLMSQLFHKDFK-QHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE 109 (266)
T ss_dssp CCHHHHHHHHHHHHTTBCHHHHHHHTCSCHH-HHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhcCCCHH-HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555555555443 445555 6777888876544 3554321 12333220 11457888888888
Q ss_pred HHHHHHHhh---hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhH
Q 013663 74 LLKNNLRTA---YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEG 150 (438)
Q Consensus 74 ~Lk~~i~~~---w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~ 150 (438)
+|...+... --.+++.....+...|++-++++...||..+-.++..+....++ ..+++.+.+.+.+.++..|..
T Consensus 110 ~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 110 LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHH
Confidence 888776542 22467777777889999999999999999999999888776543 457888888999999999999
Q ss_pred HHHHHHHHHhccccccccCCCCCCcchhhhHH---HHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHH
Q 013663 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFL---PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (438)
Q Consensus 151 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il---~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (438)
++..+..+++..+.. -...+ |.+.+.+.|++..||.+|+.|+..+....++.+..
T Consensus 187 ~l~~l~~li~~~G~~------------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 187 CLLVIEYYITNAGIS------------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHHHHHHHHHHCSG------------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhcCCC------------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999887653 12356 89999999999999999999999988877665543
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.6e-05 Score=71.92 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=133.3
Q ss_pred HHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch--
Q 013663 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-- 213 (438)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-- 213 (438)
+.+.+.+.+|..|..|+.-+..++...+....++ ..+ .....+.+.+.+.+.|.+..|...|++++..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~--~~~-~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRD--DNI-QIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC-------------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccch--hHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 5578889999999999999999887765432111 000 12344567788899999999999999999999876532
Q ss_pred ----hhHHhHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHH
Q 013663 214 ----ALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (438)
Q Consensus 214 ----~~~~~~~~ll~~l~~-~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~ 288 (438)
.+...+..+++.+.. .+.+....+|..+.+++..++..... ...+++.+...+++.++.++..++.++..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 223345567777775 46788889999999999998875432 24567788888899999999999999888
Q ss_pred hhccCCChh-hHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhh
Q 013663 289 YFEAQLPHE-NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (438)
Q Consensus 289 ~~~~~~~~~-~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 367 (438)
+.+...... ...+.++.+++.+.+.+.. .+.++
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d----------------------------------------------~~~~V 199 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGH----------------------------------------------GDRNV 199 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTC----------------------------------------------SSHHH
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhC----------------------------------------------CcHHH
Confidence 765411110 1233444444444444321 13578
Q ss_pred hhhHHHHHHHHHhhhch
Q 013663 368 RKCSAAALDVLSNVFGD 384 (438)
Q Consensus 368 r~~a~~~l~~l~~~~~~ 384 (438)
|.+|..++..+..++|+
T Consensus 200 R~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 200 RSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999999986
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.1e-05 Score=81.55 Aligned_cols=231 Identities=15% Similarity=0.151 Sum_probs=158.9
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH-----HHhhhhhhcCcHH---HHHHHHHHH
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----SELLPCLGAADRH---IRSTVGTIV 117 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~-----~~ll~~l~~~~~~---vr~~~a~~l 117 (438)
..+.++.|..++. +.++++|..|+.+|.+.-. +++.+..+. ..|++.+.+.... +|..++.+|
T Consensus 455 eaGvIp~Lv~Ll~---S~s~~~re~A~~aL~nLS~------d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~AL 525 (778)
T 3opb_A 455 RTELISFLKREMH---NLSPNCKQQVVRIIYNITR------SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRAL 525 (778)
T ss_dssp TTTHHHHHHHHGG---GSCHHHHHHHHHHHHHHHT------SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred HCcCHHHHHHHHc---CCCHHHHHHHHHHHHHHcC------CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 4577888888776 5789999999999988732 344444433 4577777665433 899999999
Q ss_pred HHHHHhh-c----cC-chHHHHHHHHHHhcc-CC-h------------hhHhHHHHHHHHHHhccc---cccccCCCCCC
Q 013663 118 SVVVQLG-G----IA-GWLELLQALVTCLDS-ND-I------------NHMEGAMDALSKICEDIP---QVLDSDVPGLA 174 (438)
Q Consensus 118 a~i~~~~-~----~~-~w~~ll~~l~~~l~~-~~-~------------~~r~~al~~l~~l~~~~~---~~~~~~~~~~~ 174 (438)
+.+.... + +. .-.+.+|.|++.+.. +. . ..+..|+.+|..++..-. +..+.
T Consensus 526 ArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~------ 599 (778)
T 3opb_A 526 TRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK------ 599 (778)
T ss_dssp HHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH------
T ss_pred HHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH------
Confidence 9998543 1 11 112788999988872 11 1 236789999998887542 11111
Q ss_pred cchhh--hHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch---hhHHhH-H---HHHHHHHHhhCCCCHHHHHHHHHHH
Q 013663 175 ECPIN--IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVSM-D---QYLQGLFLLSNDPSAEVRKLVCAAF 245 (438)
Q Consensus 175 ~~~~~--~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~-~---~ll~~l~~~~~~~~~~~~~~a~~~l 245 (438)
..+. ..+|.+..++.+++..||.+|++++.+++..-.. .+...- + .=++.+..++...+.++|+.|..+|
T Consensus 600 -~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 600 -HIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp -HHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1233 4789999999999999999999999999864321 221100 1 1266777788888899999999999
Q ss_pred HHHHhhCcccccccH--HHHHHHHhhhhcC--CChHHHhHHHHHHHHhhcc
Q 013663 246 NLLIEVRPSFLEPHL--RNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 246 ~~l~~~~~~~~~~~~--~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~ 292 (438)
..+....+......+ +..++.++..+++ .+++++..++-++..+++.
T Consensus 679 AnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 679 ANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 988766554332222 3567777777766 7999999999999998873
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.40 E-value=4.3e-05 Score=67.49 Aligned_cols=192 Identities=12% Similarity=0.096 Sum_probs=138.5
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC---ccccccc-H
Q 013663 185 LLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR---PSFLEPH-L 260 (438)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~-~ 260 (438)
+...+-+.+.+.+.+|+..+...+...++.+...+.-++.-+.-.+.+.+..+...+++.+..++... ...+..+ .
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 44445556888888999999888776665555554444553332344778889889988888776432 3345554 4
Q ss_pred HHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCC
Q 013663 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (438)
Q Consensus 261 ~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~ 340 (438)
..++|.++.-+.|..+.+|..+-+.+..++.. .+ ...+++.++..+..
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~--~~~v~~~l~~g~ks------------------------ 178 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VG--PLKMTPMLLDALKS------------------------ 178 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HC--HHHHHHHHHHGGGC------------------------
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CC--HHHHHHHHHHHHcc------------------------
Confidence 78999999999999999999998887776542 11 11234444443321
Q ss_pred CccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHH---HHHHHHhccCCCCcchhhHHHHHHHH
Q 013663 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLM---PVIQAKLSASGDEAWKDREAAVLALG 417 (438)
Q Consensus 341 ~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~---~~l~~~l~~~~~~~w~~r~aal~~l~ 417 (438)
-+|..|..+.+.+..+....|-. ....+ |.+-.++.++| -.+|.||+.++.
T Consensus 179 ----------------------KN~R~R~e~l~~l~~li~~~G~~-~~~~l~~~~~ia~ll~D~d---~~VR~aAl~~lv 232 (266)
T 2of3_A 179 ----------------------KNARQRSECLLVIEYYITNAGIS-PLKSLSVEKTVAPFVGDKD---VNVRNAAINVLV 232 (266)
T ss_dssp ----------------------SCHHHHHHHHHHHHHHHHHHCSG-GGGGGCHHHHHGGGGGCSS---HHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHHHHhcCCC-ccccccchHHHHHHHcCCC---HHHHHHHHHHHH
Confidence 14788999999999999988875 34466 88999999988 899999999999
Q ss_pred HHhhcchhhhhhccccc
Q 013663 418 AIAEGCIKGLYPHLSEV 434 (438)
Q Consensus 418 ~l~~~~~~~~~~~l~~i 434 (438)
.+-...++.+..+++.+
T Consensus 233 e~y~~~Gd~v~k~lg~L 249 (266)
T 2of3_A 233 ACFKFEGDQMWKAAGRM 249 (266)
T ss_dssp HHHHHHTTHHHHHHCCC
T ss_pred HHHHHhhHHHHHHHhcC
Confidence 99999998888877653
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.38 E-value=5e-06 Score=75.27 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=136.1
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHhhcc--------CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCC
Q 013663 100 PCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 100 ~~l~~~~~~vr~~~a~~la~i~~~~~~--------~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (438)
+-|.+.++..|..+-..+..++..... ..|..+.+.+...+.+.+..+...++.++..+++.........
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~-- 93 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN-- 93 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH--
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc--
Confidence 457788999999999888887764321 1255566777778888899999999999999998765431100
Q ss_pred CCCcchhhhHHHHHHH-hccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 172 GLAECPINIFLPRLLQ-FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 172 ~~~~~~~~~il~~l~~-~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
..+......++|.++. ++.++...+|..|+.++..++..... ...+++.+...+++.+|.++..++..+..++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 0011245667787764 68999999999999999888764321 12345666777888899999999999999998
Q ss_pred hCcccc---cccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 251 VRPSFL---EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 251 ~~~~~~---~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.++... ++.++.+++.+...+.+.+.+||..|++++..+...
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 765332 234566777777888999999999999999887654
No 90
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.30 E-value=0.00017 Score=74.46 Aligned_cols=242 Identities=13% Similarity=0.043 Sum_probs=150.8
Q ss_pred HHHHhhhhhhcC--------cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 94 IKSELLPCLGAA--------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 94 i~~~ll~~l~~~--------~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+...|.+.+.++ .+.+|+.++..|+.+..... -+++++.|...+.+.+...+..|...|+.+.-.-+.
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~---~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn- 505 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA---NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK- 505 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-
Confidence 344455555433 37899999999997765432 257788888888777777777888888876442221
Q ss_pred cccCCCCCCcchhhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013663 166 LDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (438)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~ 244 (438)
...+..+++.+ .+.+..+|..+.-+|+-+...-++.. +.++..+. .+.++-+|..++-+
T Consensus 506 -------------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~----~~li~~L~---~~~dp~vRygaa~a 565 (963)
T 4ady_A 506 -------------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA----DDLITKML---ASDESLLRYGGAFT 565 (963)
T ss_dssp -------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG----HHHHHHHH---HCSCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH----HHHHHHHH---hCCCHHHHHHHHHH
Confidence 23334444433 45678899888888876644433332 23444432 35678899888776
Q ss_pred HHHHHhhCcccccccHHHHHHHHhh-hhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhh
Q 013663 245 FNLLIEVRPSFLEPHLRNLFEYMLQ-VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (438)
Q Consensus 245 l~~l~~~~~~~~~~~~~~li~~~~~-~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (438)
++-..-..+. ...++-++. +..+.+++||..|...++.+.-.. ... ++.++..+..
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~------~e~----v~rlv~~L~~------- 622 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD------YTT----VPRIVQLLSK------- 622 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS------CSS----HHHHTTTGGG-------
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC------HHH----HHHHHHHHHh-------
Confidence 6522111111 234443333 345678899999988877764321 011 2223332220
Q ss_pred ccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhchhhHHhHHHHHHHHhccCCC
Q 013663 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (438)
Q Consensus 324 ~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 403 (438)
. .++.+|..|..+|+.++..-|. +.++..+..+..+++
T Consensus 623 ---------------------------------~-----~d~~VR~gAalALGli~aGn~~---~~aid~L~~L~~D~d- 660 (963)
T 4ady_A 623 ---------------------------------S-----HNAHVRCGTAFALGIACAGKGL---QSAIDVLDPLTKDPV- 660 (963)
T ss_dssp ---------------------------------C-----SCHHHHHHHHHHHHHHTSSSCC---HHHHHHHHHHHTCSS-
T ss_pred ---------------------------------c-----CCHHHHHHHHHHHHHhccCCCc---HHHHHHHHHHccCCC-
Confidence 0 1267899999999999866664 445556666667777
Q ss_pred CcchhhHHHHHHHHHHhhcchhh
Q 013663 404 EAWKDREAAVLALGAIAEGCIKG 426 (438)
Q Consensus 404 ~~w~~r~aal~~l~~l~~~~~~~ 426 (438)
..+|.+|++++|.+.-|..+.
T Consensus 661 --~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 661 --DFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp --HHHHHHHHHHHHHHSTTCCTT
T ss_pred --HHHHHHHHHHHHHHhcCCccc
Confidence 889999999999999876655
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.19 E-value=4e-05 Score=73.20 Aligned_cols=131 Identities=16% Similarity=0.114 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhc------cCCHhhHHHHHH-Hhhhhhhc-----CcHHHHHHHHHHHHHHHHhhccCch
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYK------SMSPSNQQYIKS-ELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGW 129 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~------~l~~~~~~~i~~-~ll~~l~~-----~~~~vr~~~a~~la~i~~~~~~~~w 129 (438)
+..=++|+=|+..||..++.+-. ..+.+..-.+.. ..+.-++| .-..||..+|+++|.+ .+.+..
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS--
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh--
Confidence 67789999999999999977531 223321211111 12222332 2578999999999999 665544
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
-.++..++..+..+.|.+|++|+..|.++ .+.+ .. ++.+++.++.+|.|.+.+||..|..+|..++
T Consensus 262 ~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL--------~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 262 NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFV--------ED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGC--------CC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHH--------HH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 24555555555677899999999999988 2211 11 6889999999999999999999999998877
No 92
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.13 E-value=0.00023 Score=73.62 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=85.1
Q ss_pred hhhhh-hcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHh-ccCChhhHhHHHHHHHHHHhccccccccCCCCCCc
Q 013663 98 LLPCL-GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (438)
Q Consensus 98 ll~~l-~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (438)
||+.+ .+.+..||+.++.+||.|...++ +..+.++..+ .+.++.+|.++..+|+.++-.-+
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~~g~~-----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~------------ 644 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVLLRDY-----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG------------ 644 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSSC-----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC------------
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC------------
Confidence 33433 45678899988888887765542 3455555544 45789999999999988764333
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND--PSAEVRKLVCAAF 245 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~a~~~l 245 (438)
...++..|.....|++..||..|+.+|+.+.....+...+.+..++..+.+...+ .++..+-.+.-+.
T Consensus 645 --~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAq 714 (963)
T 4ady_A 645 --LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQ 714 (963)
T ss_dssp --CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2567778888889999999999999999887654443333444555555554433 4455554443333
No 93
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.0016 Score=65.87 Aligned_cols=307 Identities=9% Similarity=0.078 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh----ccCchHHHHHHHHHHh
Q 013663 65 VEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG----GIAGWLELLQALVTCL 140 (438)
Q Consensus 65 ~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~----~~~~w~~ll~~l~~~l 140 (438)
..+|..|++.|-+.-.. ..........+-..+.+.|.+++...|+.+...++.+...- ....-+.+++.|++.+
T Consensus 308 ~~ir~lAavvL~KL~~~--~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSF--TKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp GGGHHHHHHHHHHHTGG--GTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC--CCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHH
Confidence 58888888887554211 11222233445566677777655555888899999886431 1122367899999999
Q ss_pred cc-CChhhHhHHHHHHHHHHhcccccccc--CCCC---CCc----------c----------------hhhhHHHHHHHh
Q 013663 141 DS-NDINHMEGAMDALSKICEDIPQVLDS--DVPG---LAE----------C----------------PINIFLPRLLQF 188 (438)
Q Consensus 141 ~~-~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~---~~~----------~----------------~~~~il~~l~~~ 188 (438)
.+ .+.....+++.++..++...+..... .+.+ +.. . .-..++|.|...
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 85 66778899999999998876642110 1000 000 0 012357888899
Q ss_pred ccCCCHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHh-hCcccc-ccc-HH
Q 013663 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSA---EVRKLVCAAFNLLIE-VRPSFL-EPH-LR 261 (438)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~---~~~~~a~~~l~~l~~-~~~~~~-~~~-~~ 261 (438)
+.++++.+|..|++++.++... ++.-...+ ...++.|..++.+... ..|..|+.+|.++.. ..|... ..+ ..
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred HcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 9899999999999999999754 22111111 1345666666654433 379999999999884 344432 111 11
Q ss_pred HHHHHHhhhhcC-CCh-------------HHHhHHHHHHHHhhccCCC-hhhH-HhhHH--HHHHHHHhccCcChhhhhh
Q 013663 262 NLFEYMLQVNKD-TDD-------------DVALEACEFWHSYFEAQLP-HENL-KEFLP--RLVPVLLSNMIYADDDESL 323 (438)
Q Consensus 262 ~li~~~~~~~~~-~~~-------------~v~~~a~~~~~~~~~~~~~-~~~~-~~~l~--~l~~~l~~~l~~~~~d~~~ 323 (438)
..++.++..+.. ... --+..|+..+..++..+.. .+.+ ...+. ..+|.|...+..
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s------- 617 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD------- 617 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-------
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-------
Confidence 566666666541 110 1155777777777775311 1122 22332 356666655531
Q ss_pred ccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhH----Hh---HHHH
Q 013663 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL----PT---LMPV 393 (438)
Q Consensus 324 ~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~----~~---l~~~ 393 (438)
+ +..+|++|..++..++..-.. .++ |. =++.
T Consensus 618 ---------------------------------~------n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l 658 (778)
T 3opb_A 618 ---------------------------------E------NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658 (778)
T ss_dssp ---------------------------------S------SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred ---------------------------------C------CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence 0 246899999999999974431 333 12 1566
Q ss_pred HHHHhccCCCCcchhhHHHHHHHHHHhhcc
Q 013663 394 IQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (438)
Q Consensus 394 l~~~l~~~~~~~w~~r~aal~~l~~l~~~~ 423 (438)
+..++.+.+ ...|.||..+|+.++.+.
T Consensus 659 LV~Ll~s~D---~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 659 LVKLLQLSD---VESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHGGGCSC---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCC---HHHHHHHHHHHHHhcCCC
Confidence 777787777 999999999999986543
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.97 E-value=0.00036 Score=74.21 Aligned_cols=199 Identities=9% Similarity=0.105 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc--CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHH
Q 013663 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (438)
Q Consensus 109 vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (438)
+++....++..++...+.+...-+++.+.+.+.. .++..+++++++++.++..+....+ ..++..+++.++
T Consensus 455 ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E-------~~~Lp~vi~~Ll 527 (1073)
T 3gjx_A 455 LYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE-------KRFLVTVIKDLL 527 (1073)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc-------cchHHHHHHHHh
Confidence 4455556665555333322333445555544443 3589999999999999877664322 135777777777
Q ss_pred HhccCCC-----HHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc-----
Q 013663 187 QFFQSPH-----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL----- 256 (438)
Q Consensus 187 ~~l~~~~-----~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~----- 256 (438)
+....+. .-++...+-+++.+.+|+... ...++.+++.+++.+.++++.+...|+.+|..+++.+...|
T Consensus 528 ~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~ 606 (1073)
T 3gjx_A 528 GLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV 606 (1073)
T ss_dssp HHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred cccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7765542 224444445677666665321 33566788888888888889999999999999999988776
Q ss_pred ---cccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccC
Q 013663 257 ---EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 257 ---~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
.||+.+++..+.....+-..+-...-++.++.++...........++..+++.+...+.
T Consensus 607 ~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~ 668 (1073)
T 3gjx_A 607 GEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWD 668 (1073)
T ss_dssp TCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 35777777777776666566666777788888877632223346677777776665543
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.85 E-value=0.00021 Score=61.20 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=109.5
Q ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH-HhccCChhhHhHHHHHHHHHHhccccccccC
Q 013663 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT-CLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (438)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (438)
.+.+......+..++...||-.++.+|+.. . .-+++++.+.. ...+.++.+|+.+..+++.+|.....
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----
Confidence 344444455555677889999999988876 2 22789999988 55567899999999999998863322
Q ss_pred CCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
+..++.+.....|++..||..|......+... + .+......+++.+-.+..|++.-||+.+...|.++.
T Consensus 138 ---------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 138 ---------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp ---------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 22567788999999999999999988665432 2 223344467777777788999999999999999999
Q ss_pred hhCcccccc
Q 013663 250 EVRPSFLEP 258 (438)
Q Consensus 250 ~~~~~~~~~ 258 (438)
+.+|+.+..
T Consensus 207 K~~Pd~V~~ 215 (240)
T 3l9t_A 207 KKFPDLVKI 215 (240)
T ss_dssp TTCHHHHHH
T ss_pred hhCHHHHHH
Confidence 988876543
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.74 E-value=0.00036 Score=66.81 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHH
Q 013663 29 STADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRH 108 (438)
Q Consensus 29 ~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~ 108 (438)
.+ ||..|.+.|..+..-|+-...+.+++.......=++|+-+...||-. ... +. + ...+.+.++.+|.+.+..
T Consensus 242 AP-VRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL---L~-~-Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 242 AP-VRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEF---VE-D-KDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp CH-HHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG---CC-C-HHHHHHHHHHHTTCSSHH
T ss_pred ee-hHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHH---HH-H-HHHHHHHHHhhcCCcccH
Confidence 35 99999999998843333234455554322366789999999989866 211 22 1 677888999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCCh--hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHH
Q 013663 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (438)
Q Consensus 109 vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (438)
||..+|.++.-++ .+...+.++..+..++.+.+. ......+..|..+|..-.. .. ..+.++|.+.
T Consensus 315 VRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-a~---------~dp~LVPRL~ 381 (800)
T 3oc3_A 315 IKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-LS---------IPPERLKDIF 381 (800)
T ss_dssp HHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-CC---------CCSGGGGGTG
T ss_pred HHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-cc---------cChHHHHHHH
Confidence 9999999999888 467789999999999987532 3344567778887775432 11 1248899999
Q ss_pred HhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013663 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (438)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~ 246 (438)
..+.++-..||.++++++..++ ..+.++-+++ +++-.++++++..+.+.+.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL------~~~~LRLIFQ---NILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS------EESIDFLVAE---VVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC------CHHHHHHHHH---HHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH------hhhHHHHHHH---HHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999997766 1222222322 2344567788888777774
No 97
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.69 E-value=6.2e-06 Score=65.36 Aligned_cols=113 Identities=13% Similarity=0.058 Sum_probs=84.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhh
Q 013663 21 LEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (438)
Q Consensus 21 l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~ 100 (438)
+..+.++|.. +|..|-..|.++.. +. +..|...+. +.++.+|..|+..|.+.- ++ .....|+.
T Consensus 18 ~~~L~~~~~~-vR~~A~~~L~~~~~-~~-~~~L~~~L~---d~~~~vR~~A~~aL~~~~-------~~----~a~~~L~~ 80 (131)
T 1te4_A 18 GSHMADENKW-VRRDVSTALSRMGD-EA-FEPLLESLS---NEDWRIRGAAAWIIGNFQ-------DE----RAVEPLIK 80 (131)
T ss_dssp ---CCSSCCC-SSSSCCSSTTSCSS-TT-HHHHHHGGG---CSCHHHHHHHHHHHGGGC-------SH----HHHHHHHH
T ss_pred HHHhcCCCHH-HHHHHHHHHHHhCc-hH-HHHHHHHHc---CCCHHHHHHHHHHHHhcC-------CH----HHHHHHHH
Confidence 4444567888 99999888876654 33 466767665 678999999998887641 12 23456777
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHH
Q 013663 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSK 157 (438)
Q Consensus 101 ~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~ 157 (438)
.+.++++.||..++.+++.+.. ++.++.|...++++++.+|..|..+|+.
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7889999999999999998752 5788999999988899999999888754
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.67 E-value=0.048 Score=53.94 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=131.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcH-----HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDF-----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~-----~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~ 88 (438)
+.+..+...+.+..-...|+.|-..|+.+.+ .|.. ...|+.+|..+ ..|.++-..+..+|-+.+... ..
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d-~~D~e~v~~~LetL~~l~~~~----~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD-RSDSEIIGYALDTLYNIISND----EE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCC----Cc
Confidence 3455555556555443389999999999886 3332 44677777764 456665556666666654321 11
Q ss_pred hhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccccc
Q 013663 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (438)
+.... ..+.-...++.-++.++... ++-++.|+..+++.+...|..++.+|..++..-+...+.
T Consensus 96 ~~~~~-----------~~~~~~~~~~~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~ 159 (651)
T 3grl_A 96 EEVEE-----------NSTRQSEDLGSQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQ 159 (651)
T ss_dssp -----------------------CHHHHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred ccccc-----------cccccchHHHHHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 10000 00000111222233333221 578899999999999999999999999999988774331
Q ss_pred CCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHH--hHHHHHHHHHHhhCCC----CHHHHHHHH
Q 013663 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP----SAEVRKLVC 242 (438)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~ll~~l~~~~~~~----~~~~~~~a~ 242 (438)
. + -..+.-++.++..|.|+...+|..|+-.|..+....++ +.+ .++..++.++.++... ...+...++
T Consensus 160 ~---I--l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 160 I---I--LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp H---H--HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred H---H--HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 0 0 01234678999999999999999999999999887653 111 1223344455544321 236777888
Q ss_pred HHHHHHHhhCc
Q 013663 243 AAFNLLIEVRP 253 (438)
Q Consensus 243 ~~l~~l~~~~~ 253 (438)
.++..+++.++
T Consensus 234 ~ll~nLLr~N~ 244 (651)
T 3grl_A 234 ILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhcCH
Confidence 88998987764
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.67 E-value=9.7e-05 Score=58.30 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~ 125 (438)
+|.+...+...|. +.++.+|..|+..|.+. .... + ..|++.+.++++.||..++.+++.+..
T Consensus 10 ~~~~~~~l~~~L~---~~~~~vR~~A~~~L~~~--------~~~~---~-~~L~~~L~d~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMA---DENKWVRRDVSTALSRM--------GDEA---F-EPLLESLSNEDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp -----------CC---SSCCCSSSSCCSSTTSC--------SSTT---H-HHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred ccccHHHHHHHhc---CCCHHHHHHHHHHHHHh--------CchH---H-HHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence 3455566666664 57888999888777542 1111 3 667788899999999999999987742
Q ss_pred cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHH
Q 013663 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (438)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (438)
++.++.|...+.++++.+|..++.+|+.+.. ...++.+.+.++++++.||..|..+|+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5678888899999999999999999987631 446788888999999999999998875
Q ss_pred H
Q 013663 206 Q 206 (438)
Q Consensus 206 ~ 206 (438)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.47 E-value=0.011 Score=50.65 Aligned_cols=170 Identities=11% Similarity=0.100 Sum_probs=112.9
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 17 ICRLLEQQIS---PSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 17 l~~~l~~~~s---~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
+.+++..+.. .=.. +-+.|...+..+.. +....+..-|.. +...++|..|+-+|... . -.++..
T Consensus 39 ~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~~--~~~~~la~~L~~--~~~deVR~~Av~lLg~~-~-----~~~~~L-- 105 (240)
T 3l9t_A 39 VARLEKDFSLIEHGFKE-EEQRALTDYKSNDG--EYIKKLAFLAYQ--SDVYQVRMYAVFLFGYL-S-----KDKEIL-- 105 (240)
T ss_dssp HHHHHHHHTC-----CH-HHHHHHHHHHHSCH--HHHHHHHHHHHT--CSSHHHHHHHHHHHHHT-T-----TSHHHH--
T ss_pred HHHHHHHHHHhhcccHH-HHHHHHHHHHhCCH--HHHHHHHHHHHh--CcchHHHHHHHHHHHhc-c-----CcHHHH--
Confidence 4444444433 2233 45555555544442 333446666664 66689999999877654 1 123333
Q ss_pred HHHHhhh-hhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 94 IKSELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 94 i~~~ll~-~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
..+.+ .-.++...||..++.++..++...++. ..++.+...+.+++..+|+.|...+.-.+.. +..
T Consensus 106 --~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~------- 172 (240)
T 3l9t_A 106 --IFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF------- 172 (240)
T ss_dssp --HHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT-------
T ss_pred --HHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh-------
Confidence 33334 234788999999999999999733332 2678888999999999999998876532221 211
Q ss_pred CCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchh
Q 013663 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (438)
......++|.+-....|++..||++.-..|..+.+..|+-
T Consensus 173 --k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 173 --KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred --hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 2345778899999999999999999999999998887643
No 101
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.36 E-value=0.11 Score=49.30 Aligned_cols=301 Identities=13% Similarity=0.101 Sum_probs=173.1
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHH
Q 013663 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL 132 (438)
Q Consensus 53 l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~l 132 (438)
-..||.. .+.++..+++|+..+-+. |+..|. ..+.-.+.++.+.-+.+..||..+-..|..+++. ..-+.+
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kf----fk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~ki 101 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKF----FKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRV 101 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHH----GGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHH----HhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhH
Confidence 3445553 366799999999666554 444443 3444446777888899999999999999888876 335778
Q ss_pred HHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 133 l~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
...|.+.+++.++..+...=..|.++.+.-+.. .+..++..+.+ ++..+|..+++.+..-+.-++
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~-----------tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG-----------TLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcChHH-----------HHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcc
Confidence 899999999888776666666666666543321 23333333333 578999999999987666554
Q ss_pred hh-hHHhHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccc--cHHHHHHHHhhhhc------CCChHHHhHH
Q 013663 213 SA-LFVSMDQ-YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNK------DTDDDVALEA 282 (438)
Q Consensus 213 ~~-~~~~~~~-ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~li~~~~~~~~------~~~~~v~~~a 282 (438)
.. +..-++. ++..+.+.++|-..+.....++ +... .+.+.. ...++++++...+. ..|.+....-
T Consensus 167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~----lL~~-lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRl 241 (507)
T 3u0r_A 167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMK----ILSG-LKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241 (507)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHH----HHHT-SGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhccccHHHHHHHHH----HHHh-cccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHH
Confidence 32 2222333 3455556666644433333333 3322 122222 23467777766532 1355554444
Q ss_pred HHHHHHhhcc----CCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCc
Q 013663 283 CEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (438)
Q Consensus 283 ~~~~~~~~~~----~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d 358 (438)
+.++....-. ....+.+.-+..+++| .+....+. .. ++
T Consensus 242 I~C~~~ALP~FS~~v~StkFv~y~~~kIlP----~l~~L~e~---------------------------------~~-~~ 283 (507)
T 3u0r_A 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLP----NLGTLTTP---------------------------------VE-GL 283 (507)
T ss_dssp HHHHHHHGGGCBTTBCCHHHHHHHHHHTGG----GTTCCCCC------------------------------------CC
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhcc----chhhcccc---------------------------------cc-ch
Confidence 4444443221 1122333344444444 32211000 00 11
Q ss_pred cccccchhhhhhHHHHHHHHHhhhch-----hhHHhHHHHHHHHhccCC--------------CCcchhhHHHHHHHHHH
Q 013663 359 DDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASG--------------DEAWKDREAAVLALGAI 419 (438)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~--------------~~~w~~r~aal~~l~~l 419 (438)
..+-.-..++..++..+|+ +.++.+++.+..++-.+. ..++-.-|+-+++|..+
T Consensus 284 -------~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L 356 (507)
T 3u0r_A 284 -------DIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQL 356 (507)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHH
Confidence 1234456666677777772 467777777766552221 13566789999999999
Q ss_pred hhcchhhh
Q 013663 420 AEGCIKGL 427 (438)
Q Consensus 420 ~~~~~~~~ 427 (438)
+..+++.+
T Consensus 357 ~~k~P~~l 364 (507)
T 3u0r_A 357 GRKLPDFL 364 (507)
T ss_dssp HTTCTHHH
T ss_pred hhhChhhh
Confidence 98877655
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.34 E-value=0.0061 Score=52.90 Aligned_cols=174 Identities=10% Similarity=0.094 Sum_probs=110.4
Q ss_pred HHHHHHHHhccCCh--hhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 132 LLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 132 ll~~l~~~l~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
-+|.+++.++++++ .++..|..++..++..-+..-. . -.-...+|.|++.|.+++..++..|+.+|.++..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~-~------I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARK-R------VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH-H------HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHH-H------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 36888889998877 7788888999998865543200 0 0123467999999999999999999999999976
Q ss_pred ccchhhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhh-------c-------
Q 013663 210 LMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN-------K------- 272 (438)
Q Consensus 210 ~~~~~~~~~~--~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~-------~------- 272 (438)
..++. ...+ ..-++.+.+++. .++.++++.+..+|..+.....-. ......-++.+...+ .
T Consensus 82 ~~~~n-k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 82 EDNDN-KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred CCHHH-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccc
Confidence 43321 1111 134555666665 467899999999999887532111 111223344443321 1
Q ss_pred --CCChHHHhHHHHHHHHhhcc-CCChhhHHhhHHHHHHHHHhccC
Q 013663 273 --DTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 273 --~~~~~v~~~a~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~l~ 315 (438)
..+.+++..|..++..++.. +...+.+.. .+.+++.|+..+.
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVR 204 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHH
Confidence 13678999999999888763 112222322 2346677766664
No 103
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.28 E-value=0.0084 Score=65.33 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC-------------------------ChhhHhHHHHHHHHHHhcc
Q 013663 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-------------------------DINHMEGAMDALSKICEDI 162 (438)
Q Consensus 108 ~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~-------------------------~~~~r~~al~~l~~l~~~~ 162 (438)
..|+..+.++..++...+....+-+.+.+.+.+.+. .....++...++..+.+.+
T Consensus 438 ~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 438 SSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888887665444444455554444321 1133455666666666665
Q ss_pred ccccccCCCCCCcchhh-hHHHHHHHhc---cCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCC------
Q 013663 163 PQVLDSDVPGLAECPIN-IFLPRLLQFF---QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND------ 232 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-~il~~l~~~l---~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~------ 232 (438)
...... .++. .+++.+++.+ +..++.+|..++.+++.+..+.... ..+++.+++.++..+.+
T Consensus 518 ~~~~e~-------~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~ 589 (1204)
T 3a6p_A 518 FRTLNR-------EEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEES 589 (1204)
T ss_dssp HHHSCT-------TCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCST
T ss_pred hccccc-------ccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccc
Confidence 332211 0112 3455555543 3458889999999998888776421 13455555555544332
Q ss_pred ------CCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCC---ChHHHhHHHHHHHHhhccCCChhhHHhhH
Q 013663 233 ------PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT---DDDVALEACEFWHSYFEAQLPHENLKEFL 303 (438)
Q Consensus 233 ------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~---~~~v~~~a~~~~~~~~~~~~~~~~~~~~l 303 (438)
...++|..|+.++..++..+++.|.||+++|...+...+... ...=+..-.+++..++..-...+....++
T Consensus 590 ~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l 669 (1204)
T 3a6p_A 590 KAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFL 669 (1204)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 124799999999999999999999999999999877765422 23444445566666654311123345667
Q ss_pred HHHHHHHHhccC
Q 013663 304 PRLVPVLLSNMI 315 (438)
Q Consensus 304 ~~l~~~l~~~l~ 315 (438)
..+++.++..+.
T Consensus 670 ~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 670 EELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHc
Confidence 777777666554
No 104
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.24 E-value=0.033 Score=48.27 Aligned_cols=210 Identities=15% Similarity=0.088 Sum_probs=126.1
Q ss_pred hhHHHHHHHhccCCCH--HHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 013663 179 NIFLPRLLQFFQSPHT--SLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~--~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 255 (438)
...+|.+++.+.++++ +++..|..++..+....++.-.... ...++.|.+++.+++++++..|+.+|..++...++.
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4467889999998877 8988888888887654332111111 134677888888888999999999999998644321
Q ss_pred ccccH-HHHHHHHhhhhc-CCChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhccCcChhhhhhccccccCCCC
Q 013663 256 LEPHL-RNLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (438)
Q Consensus 256 ~~~~~-~~li~~~~~~~~-~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~~~~ 333 (438)
=.... ...+|.+++.++ ..+.+++..|...+..++.....+.. ....-+|.|+..+.... .-|... +
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~---i~~~~i~~Lv~ll~~p~---sG~~~~-~---- 155 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL---MITEALLTLTENIIIPF---SGWPEG-D---- 155 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH---HHHHHHHHHCCCCCHHH---HCCCGG-G----
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH---HHhccHHHHHHHHhccc---cCCccc-c----
Confidence 11111 256777777776 46889999998777777765322222 23344666665443110 001000 0
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---------hhHHhHHHHHHHHhccCCCC
Q 013663 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---------EILPTLMPVIQAKLSASGDE 404 (438)
Q Consensus 334 d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~l~~~l~~~l~~~~~~ 404 (438)
+. +. . . ..+..++..|..+|..++..-.+ ..++.++.++.....+.+ .
T Consensus 156 -~~---------------~~-~-~----~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~-~ 212 (233)
T 3tt9_A 156 -YP---------------KA-N-G----LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ-P 212 (233)
T ss_dssp -CC---------------CC-C-T----TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC-T
T ss_pred -cc---------------cc-c-c----cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhccc-c
Confidence 00 00 0 0 01236778899999999764211 234555666665554332 1
Q ss_pred cchhhHHHHHHHHHHhhc
Q 013663 405 AWKDREAAVLALGAIAEG 422 (438)
Q Consensus 405 ~w~~r~aal~~l~~l~~~ 422 (438)
+-+.+|-++-+|..++-.
T Consensus 213 ~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 213 DDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 147788888888777643
No 105
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=97.13 E-value=0.31 Score=50.19 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=92.2
Q ss_pred cCCHhhHHHHHHHhhh----hhhcCcHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHhcc---CChhhHhHHHHH
Q 013663 85 SMSPSNQQYIKSELLP----CLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDS---NDINHMEGAMDA 154 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~----~l~~~~~~vr~~~a~~la~i~~~~~---~~~w~~ll~~l~~~l~~---~~~~~r~~al~~ 154 (438)
+++++.+..+...++. ++.+.+..+...+..++..++-..| .--.|.++..+...+.+ ..++....++.+
T Consensus 327 ~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 327 CLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 4777777666555444 4567899999999999999998776 55567777777777776 456666778888
Q ss_pred HHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
|..++..+... ..+..++..++..++.++.-+++.--..+++.+..++..+|
T Consensus 407 l~~~~r~lv~~------~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 407 FTRVIRFIVMD------KLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTTHHHHTTS------TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcC------cccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 88877766542 11235788888888999988888888889999999988876
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.92 E-value=0.22 Score=44.95 Aligned_cols=188 Identities=11% Similarity=0.134 Sum_probs=125.9
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhh---------ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG---------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~---------~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
.|+..|..=+-..|+.++.+++.+.+.. +....|+++..|+.+..+++.....| .+|+..++.-. . .
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G--~mLRecir~e~-l-a 157 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG--IMLRECIRHEP-L-A 157 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH--HHHHHHHTSHH-H-H
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHH--HHHHHHHHhHH-H-H
Confidence 3344444445555666666666666542 11236889999998887665332222 22333222110 0 0
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc----hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~ 243 (438)
. -++ -...+-.+++.++.++.+|-.-|+.++..++...+ +.+..+.+.++.....++.+++.-.|+++++
T Consensus 158 ~---~iL---~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 158 K---IIL---WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp H---HHH---HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H---HHh---ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 0 000 01233467789999999999999999998876543 3345566777777778888889999999999
Q ss_pred HHHHHHhh--CcccccccHH--HHHHHHhhhhcCCChHHHhHHHHHHHHhhccCC
Q 013663 244 AFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL 294 (438)
Q Consensus 244 ~l~~l~~~--~~~~~~~~~~--~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~ 294 (438)
.|+++... +...+..|+. .-+.++...+++.+..++..|++...-+.-.+.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999854 5566666764 677788888999999999999998888876643
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.81 E-value=0.047 Score=54.00 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=114.3
Q ss_pred CchHHHHHHHHHHhccC-ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC--CCHHHHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~ 203 (438)
+.-.+-++.|...+++. -..-|+.|+..|..+.+..+..+ ...-++.++..|.+ .+.++-+.++++
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-----------g~~~l~~li~~L~~d~~D~e~v~~~Let 85 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEV-----------GIQAMEHLIHVLQTDRSDSEIIGYALDT 85 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-----------HHHTHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHh-----------hhhhHHHHHHHHhcccccHHHHHHHHHH
Confidence 44567888888888764 46778899999988877666432 34457777787765 477788889999
Q ss_pred HHHHHcccch------------hhHHhH-------HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccH---H
Q 013663 204 VNQFIMLMPS------------ALFVSM-------DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL---R 261 (438)
Q Consensus 204 l~~~~~~~~~------------~~~~~~-------~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---~ 261 (438)
|..++...++ .+..++ +.-++.++.+++..+..+|..++++|..+...+++.....+ +
T Consensus 86 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p 165 (651)
T 3grl_A 86 LYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP 165 (651)
T ss_dssp HHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST
T ss_pred HHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc
Confidence 9887654321 111111 24477788888888999999999999999999887544333 3
Q ss_pred HHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 262 ~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.-++.++..+++..+-+|..|+-++..++..
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 5677788889998999999999999999876
No 108
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.46 E-value=0.41 Score=41.90 Aligned_cols=185 Identities=13% Similarity=0.150 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCCh
Q 013663 66 EIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI 145 (438)
Q Consensus 66 ~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~ 145 (438)
+.|-..+...+..+-+. +++....+...+++.-.+++..+|+-.+..++..++.. +..-+..++.|...+++.++
T Consensus 30 ~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCH
Confidence 34444444444443321 45666777788888767789999999999999998654 34567888999999988889
Q ss_pred hhHhHHHHHHHHHHhccccccccCCCCC---Ccc---hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc-------
Q 013663 146 NHMEGAMDALSKICEDIPQVLDSDVPGL---AEC---PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------- 212 (438)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~---~~~---~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------- 212 (438)
.+...++.+...+...+-..+-.. ++. .+. .+..+=..++..+.+.+..||..|+|.+..++....
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~-~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~ 183 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSL-MEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSL 183 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-SSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccC
Confidence 888888888877766554433211 000 001 122333456667778899999999999999874321
Q ss_pred ------------h--------hhHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhCcccc
Q 013663 213 ------------S--------ALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 213 ------------~--------~~~~~~~~ll~~l~~~~~~~--~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
. .+..--..++..|+....++ +...-..++.+|..+++.+|.++
T Consensus 184 ~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 184 KRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp CCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 0 01111135677777666554 34467788999999999988765
No 109
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.40 E-value=0.036 Score=58.55 Aligned_cols=190 Identities=12% Similarity=0.017 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-
Q 013663 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG- 124 (438)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~- 124 (438)
+++++..+...+..+.+....-+..-..+++..+.-.-....+.....++..+-..+.+.+..-.+.+|+++|.+..+.
T Consensus 461 ~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK 540 (997)
T 1vsy_5 461 TREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSK 540 (997)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCS
T ss_pred CHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccC
Confidence 3788776666665443333333555566666666411111223334456666666667778888999999999998764
Q ss_pred -c-----cCchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHH--HHh---ccCC
Q 013663 125 -G-----IAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL--LQF---FQSP 192 (438)
Q Consensus 125 -~-----~~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l--~~~---l~~~ 192 (438)
+ ..-|.-+.|.|...+. +-+++....=..++..++...... ....++..| +.. .+..
T Consensus 541 ~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dpr-----------R~~~L~e~l~~~~~~l~~~~~ 609 (997)
T 1vsy_5 541 FMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLR-----------RSKTFFCHFINADGMFDRESD 609 (997)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGG-----------GCHHHHHHHTCCCCCCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChh-----------hhHHHHHHHHHhhcccCCCCC
Confidence 2 1357788999999998 455555444445566666554432 234455544 221 1111
Q ss_pred CH---HHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 193 HT---SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 193 ~~---~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
+. .-|..-++.+..-..|--.. +..++..+. +.++-..+|..+...|..+....
T Consensus 610 ssf~~~~rl~ll~~~l~~~~wr~~~----~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 610 AATHQTSKIYMLRSILMSMEFRAPD----VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTSSCC----CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHhcccccc----HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 11 12333333333333332111 233444333 66677889999988888877654
No 110
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.32 E-value=0.096 Score=43.61 Aligned_cols=148 Identities=12% Similarity=0.229 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcC--CChHHHhHHHHHHHHhhccCCChhhHHhhHHHHHHHHHhcc
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~--~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 314 (438)
.|..|++.+. . . .-+.+.+|-++.++...... .+-..-...+....++...+.. .+.+|+..++|.+++++
T Consensus 24 ~r~~aL~sL~---~-D-~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l--~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 24 MKDIAIECLE---K-E-SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV--FIDPYLHQILPSLLTCV 96 (196)
T ss_dssp THHHHHHHHH---H-C-SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC--CCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---c-C-CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHHHHH
Confidence 4666655554 2 1 22334455555555444321 2445555666667777665332 36899999999999987
Q ss_pred CcChhhhhhccccccCCCCCCCCCCCCccccCCCCCCCCCCCCccccccchhhhhhHHHHHHHHHhhhch---hhHHhHH
Q 013663 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLM 391 (438)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~ 391 (438)
.... . . ...+|..|++++..++..+|. ..-|.+.
T Consensus 97 l~k~-----------------------------------l--~------~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~ 133 (196)
T 4atg_A 97 IGKS-----------------------------------I--V------DDDVRKMSADIVKYIYDTYSRSYKTLAPRVL 133 (196)
T ss_dssp HCTT-----------------------------------C--C------CHHHHHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred Hhcc-----------------------------------c--C------HHHHHHHHHHHHHHHHHHhCccCchHHHHHH
Confidence 5210 0 0 117899999999999999987 3345566
Q ss_pred HHHHHHhccCCCCcchhhHHHHHHHHHHhhcchhh-hhhcccccc
Q 013663 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEVI 435 (438)
Q Consensus 392 ~~l~~~l~~~~~~~w~~r~aal~~l~~l~~~~~~~-~~~~l~~i~ 435 (438)
..+...+.+++ .+...+++|+..++++....-.. +.|+++.+.
T Consensus 134 ~tl~k~l~dp~-~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 134 KTLKGVWMDPN-RSEDSQYGALYCLSILSKNVVNTVIREHAEEYK 177 (196)
T ss_dssp HHHHHHHTCTT-SCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHH
Confidence 66666665543 34889999999999988754433 457776543
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.23 E-value=0.0016 Score=57.03 Aligned_cols=133 Identities=22% Similarity=0.229 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~ 141 (438)
+.++.+|..|+..| +++ .+..++.++++.||..++..+ +. +.+...+.
T Consensus 61 d~~~~VR~~AA~~l-----------~~~-------~l~~L~~D~~~~VR~~aA~~L-------~~-------~~L~~ll~ 108 (244)
T 1lrv_A 61 DPFWERRAIAVRYS-----------PVE-------ALTPLIRDSDEVVRRAVAYRL-------PR-------EQLSALMF 108 (244)
T ss_dssp CSSHHHHHHHHTTS-----------CGG-------GGGGGTTCSSHHHHHHHHTTS-------CS-------GGGGGTTT
T ss_pred CCCHHHHHHHHHhC-----------CHH-------HHHHHccCcCHHHHHHHHHHC-------CH-------HHHHHHHc
Confidence 78899999888632 322 355566789999999988642 11 24556677
Q ss_pred cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHH
Q 013663 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (438)
Q Consensus 142 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 221 (438)
++++.+|..+...+ +. +.+...++|+++.||..+...+ +.
T Consensus 109 D~d~~VR~~aA~~l-------~~------------------~~L~~L~~D~d~~VR~~aA~~l-------~~-------- 148 (244)
T 1lrv_A 109 DEDREVRITVADRL-------PL------------------EQLEQMAADRDYLVRAYVVQRI-------PP-------- 148 (244)
T ss_dssp CSCHHHHHHHHHHS-------CT------------------GGGGGGTTCSSHHHHHHHHHHS-------CG--------
T ss_pred CCCHHHHHHHHHhC-------CH------------------HHHHHHHcCCCHHHHHHHHHhc-------CH--------
Confidence 88888988877632 21 1234557899999999888731 21
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHH
Q 013663 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (438)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~ 285 (438)
+.+..+++|+++.||..+...+ +. +.+...++|.+.+||..++..
T Consensus 149 --~~l~~l~~D~d~~VR~~aa~~l-------~~----------~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 149 --GRLFRFMRDEDRQVRKLVAKRL-------PE----------ESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp --GGGGGTTTCSCHHHHHHHHHHS-------CG----------GGGGGSTTCSSHHHHHHHHHH
T ss_pred --HHHHHHHcCCCHHHHHHHHHcC-------CH----------HHHHHHHcCCCHHHHHHHHHh
Confidence 1233567789999999887751 10 233355788999999888853
No 112
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.22 E-value=0.0096 Score=62.91 Aligned_cols=169 Identities=13% Similarity=0.100 Sum_probs=117.6
Q ss_pred HHHHHHHhhc---CCcHHHHHHHHHhhc-c-CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCc-HHH
Q 013663 36 IWQQLQQYSQ---FPDFNNYLAFILARA-E-GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAAD-RHI 109 (438)
Q Consensus 36 A~~~L~~~~~---~p~~~~~l~~il~~~-~-~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~-~~v 109 (438)
|...+..+.. .++....++..+..- . +.+= .|..++..+...+-++.-.++.+.+..|.+.++.+|.++. ..|
T Consensus 782 a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EV 860 (997)
T 1vsy_5 782 PVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEV 860 (997)
T ss_dssp SHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHH
Confidence 4455555544 233444344443321 1 2344 9998988998888888878898999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhcc------------CChhhHhHHHHHHHHHHhccccccccCCCCCCcc
Q 013663 110 RSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDS------------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (438)
Q Consensus 110 r~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~------------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (438)
|..||.+|+.+.... +...-.+++..+...+.. .+...|++|...|+.++...|..+= .| .
T Consensus 861 Re~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP--~P----~ 934 (997)
T 1vsy_5 861 RVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFP--LP----P 934 (997)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSS--CC----T
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCC--CC----c
Confidence 999999999998764 323333555555554411 1125889999999999999887421 01 3
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (438)
.+++++..|....+++.+ ++..+=++++.+-....
T Consensus 935 w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 935 WIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp HHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence 566777667666777544 99999999998866543
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.21 E-value=0.78 Score=42.60 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=116.8
Q ss_pred CHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccccc
Q 013663 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (438)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 166 (438)
+++....+...+++.-.+++..||+..+..|+..++.. ...-+..++.|...+.+.++.+...++.+...+...+-..+
T Consensus 57 dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 57 DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777889999999999999999764 33458899999999988888888888888777765443322
Q ss_pred ccCCCCC---Cc---chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc------h-------h-------------
Q 013663 167 DSDVPGL---AE---CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------S-------A------------- 214 (438)
Q Consensus 167 ~~~~~~~---~~---~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~-------~------------- 214 (438)
... ++. .+ ..+..+-..++..+.+.+..||..|+|.+..++.... + .
T Consensus 136 ~~~-~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L 214 (386)
T 3o2t_A 136 VKS-RVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI 214 (386)
T ss_dssp HHC--CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred hcC-CCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence 110 000 00 1123334456667777899999999999998874321 0 0
Q ss_pred ----hHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhCcccccccHHHH
Q 013663 215 ----LFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (438)
Q Consensus 215 ----~~~~~~~ll~~l~~~~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l 263 (438)
+..--..++..|+..+..+ ++-.-..++.+|..+++..|.++...++.+
T Consensus 215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL 269 (386)
T 3o2t_A 215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAY 269 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 1111135777777777643 345667789999999999998764433433
No 114
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.06 E-value=1.2 Score=45.92 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=89.4
Q ss_pred chhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHhh-
Q 013663 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND---PSAEVRKLVCAAFNLLIEV- 251 (438)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~a~~~l~~l~~~- 251 (438)
..++.+.|.+..++-+.+..+...+..++..++...|..-.-.++.+++.+...++. .++.-...+++++..++..
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999999998877722222345566666666554 4566666788888877753
Q ss_pred -CcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc
Q 013663 252 -RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 252 -~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~ 292 (438)
..+.+..|+..++..++..+.-+|..-...++.++..++..
T Consensus 415 v~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp TTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred hcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHh
Confidence 33456789999999999999888888888999999998765
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.90 E-value=0.8 Score=40.03 Aligned_cols=146 Identities=5% Similarity=0.029 Sum_probs=97.8
Q ss_pred HHHHHHhhhhhhc----CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 92 QYIKSELLPCLGA----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 92 ~~i~~~ll~~l~~----~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
..-+..+.+.+++ ++ ..+-..-.-+-.++.+..+.-.|++++.++....+.+..+|.-...++...|..-++
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~--- 86 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE--- 86 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG---
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH---
Confidence 3445555555542 23 333333333333333323567899999999977677888999999999888854332
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc-------ch---hhH---HhHHHHHHHHHHhhCCCC
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-------PS---ALF---VSMDQYLQGLFLLSNDPS 234 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-------~~---~~~---~~~~~ll~~l~~~~~~~~ 234 (438)
....+++.+..++++.++.|.+.++.|..++.... +. ... ..+..+=..+++...+.+
T Consensus 87 ---------l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n 157 (257)
T 3gs3_A 87 ---------LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNEN 157 (257)
T ss_dssp ---------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSC
T ss_pred ---------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCC
Confidence 46788899999999999999999998887765431 11 111 123344456666677777
Q ss_pred HHHHHHHHHHHHHHHh
Q 013663 235 AEVRKLVCAAFNLLIE 250 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~ 250 (438)
..+|..+++.+..++-
T Consensus 158 ~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 158 DGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 8999999999888774
No 116
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.78 E-value=0.041 Score=56.13 Aligned_cols=173 Identities=10% Similarity=0.066 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhH-HHHHH-----HhhhhhhcCcHHHHHHHHHHHHHHHHhhcc---------
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ-QYIKS-----ELLPCLGAADRHIRSTVGTIVSVVVQLGGI--------- 126 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~-~~i~~-----~ll~~l~~~~~~vr~~~a~~la~i~~~~~~--------- 126 (438)
+.++..|..|+..|.+.+. +++.+ ..++. .+-.+|.+++..||..++.++..++...+.
T Consensus 45 S~~~~~r~~A~~al~~l~~------~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQ------DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTT------SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHc------CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 7899999999999999874 22322 22232 233456788999999999999999876432
Q ss_pred CchHHHHHHHHHH---hccC-------C-------hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhc
Q 013663 127 AGWLELLQALVTC---LDSN-------D-------INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (438)
Q Consensus 127 ~~w~~ll~~l~~~---l~~~-------~-------~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (438)
+-|+.++..+-.. +... . +.....++.+|..+|+.-...+.. -.....++.++..+
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~-------v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA-------VATKQTILRLLFRL 191 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-------HHhcccHHHHHHHH
Confidence 3455544443322 1111 0 112334566777777655443210 01134566666665
Q ss_pred cC---CCHHHHHHHHHHHHHHHcccchhhHHhH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013663 190 QS---PHTSLRKLSLGSVNQFIMLMPSALFVSM----DQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 190 ~~---~~~~vr~~al~~l~~~~~~~~~~~~~~~----~~ll~~l~~~~~~~~~~~~~~a~~~l~~l 248 (438)
.+ ...+++..|+.||..+....++...... ..++..+.....+.++ .+..++..+..+
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni 256 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNV 256 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhH
Confidence 33 3578999999999998876543221111 1234444444433333 344555555444
No 117
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.76 E-value=0.02 Score=58.45 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=87.8
Q ss_pred HHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH-HHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL-PRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il-~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
.++|.+ +.++++++..|..|+.+|..++++-... . + -.-..++ +.+...+.|++.+||.+|+.+|.++..
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~--~----l--~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCR--K----L--LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHH--H----H--HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHH--H----H--HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 456655 5689999999999999999999743321 0 0 0123344 456678999999999999999999875
Q ss_pred ccchhhHHh------HHHHHHHH---HHhhCC-------CC-------HHHHHHHHHHHHHHHhhCcccccccH-HHHHH
Q 013663 210 LMPSALFVS------MDQYLQGL---FLLSND-------PS-------AEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFE 265 (438)
Q Consensus 210 ~~~~~~~~~------~~~ll~~l---~~~~~~-------~~-------~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~ 265 (438)
.....+..+ ++.++..+ ...+.. .. +.+..+++.+|..+++...+.+.... ...++
T Consensus 106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~ 185 (684)
T 4gmo_A 106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL 185 (684)
T ss_dssp HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence 532222111 12222222 111110 11 12334566677777765544332221 13344
Q ss_pred HHhhhh---cCCChHHHhHHHHHHHHhhcc
Q 013663 266 YMLQVN---KDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 266 ~~~~~~---~~~~~~v~~~a~~~~~~~~~~ 292 (438)
.++..+ .....+++..|.+++..+++.
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 443332 123467888888888887664
No 118
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.53 E-value=0.31 Score=43.95 Aligned_cols=112 Identities=10% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccch-
Q 013663 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS- 213 (438)
Q Consensus 135 ~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~- 213 (438)
.+++.++.++-++-..|+.++..+...-..... .++..+.+.++..+.+++.+++.-.|..+++.|+.++..-..
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva----efL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~ 243 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSA----EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNF 243 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHH----HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHH----HHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHH
Confidence 455677777777777788888777654322111 122234567888888999999999999999999998765321
Q ss_pred -hhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q 013663 214 -ALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 214 -~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~ 250 (438)
....++ +.-+..+..++.|++..++..|+..+--++.
T Consensus 244 ~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 244 TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 112222 2456777778899999999999999987775
No 119
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=95.13 E-value=2.1 Score=39.86 Aligned_cols=235 Identities=14% Similarity=0.132 Sum_probs=132.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhh-cCCc---HH-HHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 013663 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QFPD---FN-NYLAFILAR---AEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (438)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~-~~p~---~~-~~l~~il~~---~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~ 88 (438)
+.++|..+.|+|.. .|......|..+- +..+ ++ ..+-+++.. ....-..+- -.+.+|+..++..=..+.+
T Consensus 131 i~~Ll~lfdSeDpr-ER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIa-eLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHH-HHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHH-HHHHHHHHHHcccCCCchH
Confidence 55666666677777 7777777666533 1111 11 111112111 001111111 1233344444432223556
Q ss_pred hhHHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 89 ~~~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
+-+..+...|+.+-..+ -..--..++.++..++..++ ..-..++..++...--.+..-...-+.-+..+++.++..
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~-- 285 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPS-- 285 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHH--
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHH--
Confidence 66667777777776643 33445688999998888763 222345555555554445544445556677777666542
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH--HHcccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAA 244 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~ 244 (438)
-+......++..+..++.+++.+|-..|+....+ ++..+.+.-...++.+++.+.+... +=+..++..++.+
T Consensus 286 -----~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~v 360 (403)
T 3fga_B 286 -----EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 360 (403)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 0123456677788889999999998888765432 2222222122233445555554332 3357899999999
Q ss_pred HHHHHhhCcccccccHH
Q 013663 245 FNLLIEVRPSFLEPHLR 261 (438)
Q Consensus 245 l~~l~~~~~~~~~~~~~ 261 (438)
+..+.+..+..|.....
T Consensus 361 lk~l~e~d~~lF~~~~~ 377 (403)
T 3fga_B 361 LKLFMEMNQKLFDDCTQ 377 (403)
T ss_dssp HHHHHTTSCCCCCTTHH
T ss_pred HHHHHHhCHHHHHHHHH
Confidence 99999999988866443
No 120
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=94.66 E-value=2.3 Score=40.30 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=94.8
Q ss_pred CCHhhHHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 86 MSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
+.++-+..+...|+.+.... -..--..++.++..++..++. .-..++..++...--.+..-...-+.-+..+++.++.
T Consensus 239 LKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~ 317 (449)
T 2npp_B 239 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP 317 (449)
T ss_dssp CCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCH
T ss_pred CcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH-hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 45666666666666666543 233445788888888877631 2234555555554444444444455666667766654
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHH--HHcccchhhHHhHHHHHHHHHHhh----C-CCCHHH
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLS----N-DPSAEV 237 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~ll~~l~~~~----~-~~~~~~ 237 (438)
. -+......++..+..++++++.+|-..|+....+ ++..+ ..+-..+++.++..+ . +=+..+
T Consensus 318 ~-------ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii~p~L~~~s~~HWn~~V 386 (449)
T 2npp_B 318 S-------EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSLYRNSKTHWNKTI 386 (449)
T ss_dssp H-------HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHHTSCTTCCSSTTH
T ss_pred H-------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhhHHHHHHHHHHhcCHHH
Confidence 2 0123456677888889999999998888755432 22222 222234445444433 1 224578
Q ss_pred HHHHHHHHHHHHhhCcccc
Q 013663 238 RKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 238 ~~~a~~~l~~l~~~~~~~~ 256 (438)
+..+..++..+.+..+..|
T Consensus 387 ~~la~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 387 HGLIYNALKLFMEMNQKLF 405 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCHHHH
Confidence 9999999988887766655
No 121
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.57 E-value=1.2 Score=40.07 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=80.1
Q ss_pred cCCCHHHHH-HHHHHHHHHHcccchhhHHhHHHHHHHHHHh----hCC---CCHHHHHHHHHHHHHHHhhCcccccccH-
Q 013663 190 QSPHTSLRK-LSLGSVNQFIMLMPSALFVSMDQYLQGLFLL----SND---PSAEVRKLVCAAFNLLIEVRPSFLEPHL- 260 (438)
Q Consensus 190 ~~~~~~vr~-~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~----~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~- 260 (438)
++..+..|. .++.++..++..+.+.+.+.++.+++.++.. ++. .-|+.|..-++.+..+...+...+-..-
T Consensus 83 ~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~ 162 (321)
T 1w9c_A 83 QRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP 162 (321)
T ss_dssp HTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCH
T ss_pred HhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCH
Confidence 344444442 4567777777766666677778888777763 332 3489999999999999988776554433
Q ss_pred ---HHHHHHHhhhhcCCChHHHhHHHHHHHHhhcc-CCC----hhhHHhhHHHHHHHHHhccC
Q 013663 261 ---RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLP----HENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 261 ---~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~-~~~----~~~~~~~l~~l~~~l~~~l~ 315 (438)
..++..++-..++.+.+|...+++.+..+.+. ... ......|+-.++..++.-+.
T Consensus 163 ~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlT 225 (321)
T 1w9c_A 163 TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVT 225 (321)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555557899999999998777665443 101 12234455555555555444
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.04 E-value=2.1 Score=45.85 Aligned_cols=137 Identities=15% Similarity=0.026 Sum_probs=91.2
Q ss_pred cHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhc---cCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHh
Q 013663 48 DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYK---SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 48 ~~~~~l~~il~~~-~~~~~~~R~~A~~~Lk~~i~~~w~---~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~ 123 (438)
+.+..+..++.+. ...++.+|..|...+...+.++.. ..+++....+.+.+.+.+...+..-+..+-.+|+++..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 4555555565432 135678999999999999887543 23566677888888888877766666677777777753
Q ss_pred hccCchHHHHHHHHHHhcc-------CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC--CCH
Q 013663 124 GGIAGWLELLQALVTCLDS-------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHT 194 (438)
Q Consensus 124 ~~~~~w~~ll~~l~~~l~~-------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~ 194 (438)
|..++.+..++.. ....+|..|+.+|..+....+ ..+-+.+++.+.| .+.
T Consensus 470 ------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------------~~v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 470 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------------RKVQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------------HHHHHHHHHHHHCTTSCH
T ss_pred ------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------------HHHHHHHHHHhcCCCCCh
Confidence 3455655555431 134577789888877664333 2344566777744 589
Q ss_pred HHHHHHHHHHHH
Q 013663 195 SLRKLSLGSVNQ 206 (438)
Q Consensus 195 ~vr~~al~~l~~ 206 (438)
+||.+|+..+..
T Consensus 529 EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 529 ELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987743
No 123
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.73 E-value=4.3 Score=37.63 Aligned_cols=246 Identities=17% Similarity=0.199 Sum_probs=144.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--cCCcHHH-HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYS--QFPDFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~--~~p~~~~-~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
.-+++..+|+.+.....+ .+-..-.+.+++. ++|.+.. ++-.++.-....+..+|...+.++.....+ ..+
T Consensus 23 ~~~~v~~lln~A~~~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~e 96 (386)
T 3o2t_A 23 TSERVVDLLNQAALITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIE 96 (386)
T ss_dssp HHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGG
T ss_pred HHHHHHHHHHhhhccChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHH
Confidence 446788888887653345 5666666666642 4564322 233333322367899999999888877654 334
Q ss_pred hHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhh-------cc------CchHH---HHHHHHHHhccCChhhHhHHHH
Q 013663 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-------GI------AGWLE---LLQALVTCLDSNDINHMEGAMD 153 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~-------~~------~~w~~---ll~~l~~~l~~~~~~~r~~al~ 153 (438)
....+...|..++.++++.|.+.+..+.+.+.... +. ..|.. +-..++..+.+.+..+|..++.
T Consensus 97 l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiK 176 (386)
T 3o2t_A 97 LLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIK 176 (386)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 44556667777777888888887777777776431 11 34754 4456777788888999999999
Q ss_pred HHHHHHhcccccc-c-------c-C-----CC---CCC-----cchhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHc
Q 013663 154 ALSKICEDIPQVL-D-------S-D-----VP---GLA-----ECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 154 ~l~~l~~~~~~~~-~-------~-~-----~~---~~~-----~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~ 209 (438)
++..++-...... . . + ++ .++ +..-..++..++..+..+ +.-.-.+++.+|..++.
T Consensus 177 Fle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak 256 (386)
T 3o2t_A 177 FVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIAR 256 (386)
T ss_dssp HHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 9999875332110 0 0 0 11 111 223456778888888763 44455667888888887
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 210 LMPSALFVSMDQYLQGLFLLSNDPS--------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
.-|.. ++.+++++..+..+.. ..+++..=-.|..+.++ |.. .++-++|-..+...
T Consensus 257 ~RP~~----~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~-p~s-~~~~~~I~~~L~~L 319 (386)
T 3o2t_A 257 QRPMF----MSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH-PAS-LEFQAQITTLLVDL 319 (386)
T ss_dssp HSGGG----HHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS-GGG-GGGHHHHHHHHHHT
T ss_pred hcHHH----HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC-CCc-hhhHHHHHHHHHHH
Confidence 76643 3345555544321111 12333333344555553 333 26666766666554
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.56 E-value=9.2 Score=40.89 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=99.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhc-------cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcch
Q 013663 105 ADRHIRSTVGTIVSVVVQLGG-------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~-------~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (438)
.++.+|..+..+++.++.... ...-+.+...+.+.+...+...+..++.+|+.+-
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g------------------ 468 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG------------------ 468 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC------------------
Confidence 467888888888888886531 1224567777777777777778888888887652
Q ss_pred hhhHHHHHHHhccC-------CCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQS-------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--NDPSAEVRKLVCAAFNLL 248 (438)
Q Consensus 178 ~~~il~~l~~~l~~-------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~a~~~l~~l 248 (438)
.+..++.+.+++.. ....||.+|+.+|..+....|+... +.++++. ...++++|..|+..+.
T Consensus 469 ~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~-------~il~~i~~n~~e~~EvRiaA~~~Lm-- 539 (1056)
T 1lsh_A 469 QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ-------EIVLPIFLNVAIKSELRIRSCIVFF-- 539 (1056)
T ss_dssp CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH-------HHHHHHHHCTTSCHHHHHHHHHHHH--
T ss_pred ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH-------HHHHHHhcCCCCChHHHHHHHHHHH--
Confidence 13345556565532 2457889999999887765543222 2233433 2346899999877664
Q ss_pred HhhCcccccccHHHHHHHHhhhh-cCCChHHHhHHHHHHHHhhcc
Q 013663 249 IEVRPSFLEPHLRNLFEYMLQVN-KDTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 249 ~~~~~~~~~~~~~~li~~~~~~~-~~~~~~v~~~a~~~~~~~~~~ 292 (438)
+..|+. .++.-+...+ .+.+..|+......+.++++.
T Consensus 540 -~t~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 540 -ESKPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HTCCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -HHCcCH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 444542 2333333333 446888988888888888876
No 125
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.30 E-value=0.12 Score=44.95 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=51.1
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhc
Q 013663 25 ISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA 104 (438)
Q Consensus 25 ~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~ 104 (438)
.+++.. +|..|-..| |.+ ++.-+.. +.++.+|..|+.. ++. ..+..++.+
T Consensus 60 ~d~~~~-VR~~AA~~l------~~~---~l~~L~~--D~~~~VR~~aA~~-----------L~~-------~~L~~ll~D 109 (244)
T 1lrv_A 60 ADPFWE-RRAIAVRYS------PVE---ALTPLIR--DSDEVVRRAVAYR-----------LPR-------EQLSALMFD 109 (244)
T ss_dssp TCSSHH-HHHHHHTTS------CGG---GGGGGTT--CSSHHHHHHHHTT-----------SCS-------GGGGGTTTC
T ss_pred cCCCHH-HHHHHHHhC------CHH---HHHHHcc--CcCHHHHHHHHHH-----------CCH-------HHHHHHHcC
Confidence 456666 898888854 211 1222332 7889999988842 232 245566677
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHH
Q 013663 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMD 153 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~ 153 (438)
+++.||..++..+ +. +.+...++++++.+|..+..
T Consensus 110 ~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 110 EDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHH
Confidence 8888888877632 11 12334456677777777665
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.39 E-value=7.7 Score=36.86 Aligned_cols=279 Identities=13% Similarity=0.113 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCcHH----HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFN----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~p~~~----~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+++.+....+|.+.-. +.. ..+-|.+.+-+|-+ .|+.. ..++.++. +.+.++|..|.--|=..
T Consensus 25 ~~~~~~y~~Il~~~kg-~~k-~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE---Ded~~IR~qaik~Lp~~------- 92 (507)
T 3u0r_A 25 GQHKDAYQVILDGVKG-GTK-EKRLAAQFIPKFFKHFPELADSAINAQLDLCE---DEDVSIRRQAIKELPQF------- 92 (507)
T ss_dssp GGGHHHHHHHHHGGGS-CHH-HHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHGGGG-------
T ss_pred cccHHHHHHHHHhcCC-CHH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhhHHH-------
Confidence 3455667777776544 344 77778888877654 67643 33444443 78899998554322211
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
.-.+....|-..|.++|...++.-+..+-+++..+.+.++......++..+.. +++.+|+.++..|..=+..++..
T Consensus 93 ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 93 ATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp CCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTT
T ss_pred hhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchh
Confidence 11145667778889999988888899999999999998876555555555554 57889998888776666555543
Q ss_pred cccCCCCCCcchhh-hHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc--hhhHHhHHHHHHHHHHhhC-----C-CCHH
Q 013663 166 LDSDVPGLAECPIN-IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSN-----D-PSAE 236 (438)
Q Consensus 166 ~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~-----~-~~~~ 236 (438)
++...+. .+...+.+.+.|-...= +..+.+++.... +.. .-...++..+..... + .|.+
T Consensus 169 -------~l~~E~E~~i~~~ikK~L~DVT~~E----F~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e 236 (507)
T 3u0r_A 169 -------VLTKEVEELILTESKKVLEDVTGEE----FVLFMKILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPD 236 (507)
T ss_dssp -------TSCHHHHHHHHHHHHHHTTSCCHHH----HHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHH
T ss_pred -------hccHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHH
Confidence 2222333 35566777776643321 122223332221 111 112344444443321 1 3455
Q ss_pred HHHHHHHHHHHHHhhCcccccccHHHHHHHHhh----hhcC-----CChHHHhHHHHHHHHhhccCCChhhHHhhHHHHH
Q 013663 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ----VNKD-----TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (438)
Q Consensus 237 ~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~----~~~~-----~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~l~ 307 (438)
.-...+.|+....-.+.... .-..++.++.. ...+ ..++.+..-+..+..++..-...+.....++.|+
T Consensus 237 ~vdRlI~C~~~ALP~FS~~v--~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy 314 (507)
T 3u0r_A 237 CVDRLLQCTRQAVPLFSKNV--HSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF 314 (507)
T ss_dssp HHHHHHHHHHHHGGGCBTTB--CCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH
Confidence 55555566655443221111 11234444332 2221 1223565555555555554222355678899999
Q ss_pred HHHHhccCcChh
Q 013663 308 PVLLSNMIYADD 319 (438)
Q Consensus 308 ~~l~~~l~~~~~ 319 (438)
..|+.+|...+.
T Consensus 315 ~~L~~ymP~~p~ 326 (507)
T 3u0r_A 315 DKLLEYMPLPPE 326 (507)
T ss_dssp HHHHTTSCCCC-
T ss_pred HHHHHHCCCCcc
Confidence 999999986654
No 127
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=91.32 E-value=6.3 Score=33.73 Aligned_cols=131 Identities=9% Similarity=0.026 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHH-HHHHHHHHhhccCchHHHHHHHHHHh
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVG-TIVSVVVQLGGIAGWLELLQALVTCL 140 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a-~~la~i~~~~~~~~w~~ll~~l~~~l 140 (438)
+..-+.|.+|..+++.. ...++++....+...+- .-.+..+.-.+| .+++.+++..+. .+.+.+..++
T Consensus 72 ~~~~E~r~~ai~~l~~~----~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p~----~~~~~l~~W~ 140 (232)
T 3jxy_A 72 LPEREFQAAALDIMQKY----KKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHPE----LISAYIPKWI 140 (232)
T ss_dssp SSBHHHHHHHHHHHHHT----GGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCGG----GGGGTHHHHH
T ss_pred CcHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCHH----HHHHHHHHHh
Confidence 45677998888888643 33466666666654332 235566665554 677887776432 1456777888
Q ss_pred ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHH
Q 013663 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (438)
Q Consensus 141 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (438)
.+++.-.|+.|+.++ ++.... .....+++.+...+.|++..|+.+.-.+|..+....|+...+
T Consensus 141 ~s~~~w~rR~ai~~~------l~~~~~--------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQ------LKYKQK--------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp HSSCHHHHHHHHHTT------TTCGGG--------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCchHHHHHHHHHH------HHHHhC--------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 898888888887654 111111 234566777788899999999999999998887776654433
No 128
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=90.58 E-value=8.1 Score=34.90 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH-hhcCCcHHH---------HHHHHHhhccCCCHHHHHHHHHHHHHHHHh--h
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNN---------YLAFILARAEGKSVEIRQAAGLLLKNNLRT--A 82 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~-~~~~p~~~~---------~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~--~ 82 (438)
.....++..+++++.. .++.|-..|++ ++..++|+. .|+.++. +.+.++..+++..|++.+.+ .
T Consensus 118 ~ra~~iiekL~~~~~~-~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~---~~~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 118 VRVNAILEKLYSSSGP-ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA---AADHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT---TSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHhcCCcH-HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH---hcChHHHHHHHHHHHHHHhcccc
Confidence 4566777777778888 99999999998 766554432 3444553 56999999999999999875 3
Q ss_pred hccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc------------------cCchHHHHHHHHHHhccCC
Q 013663 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG------------------IAGWLELLQALVTCLDSND 144 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~------------------~~~w~~ll~~l~~~l~~~~ 144 (438)
|..+-. .....+.+...+.+.+..|.+.+-.++-.++.... ...|..++..|.+. .+.+
T Consensus 194 m~gvvs--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-~~~D 270 (339)
T 3dad_A 194 MLGVVA--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-NGAD 270 (339)
T ss_dssp HHHHHH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-TSCC
T ss_pred ccchhC--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-CCCC
Confidence 432211 12233445555556667776666666666655421 11243333322211 1455
Q ss_pred hhhHhHHHHHHHHHHhccc
Q 013663 145 INHMEGAMDALSKICEDIP 163 (438)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~ 163 (438)
......|+..+..+....+
T Consensus 271 ~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 271 PELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 6666666666666665555
No 129
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.81 E-value=7.6 Score=32.14 Aligned_cols=150 Identities=12% Similarity=0.155 Sum_probs=87.5
Q ss_pred CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhcc
Q 013663 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDI 162 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~ 162 (438)
++.|.+.+... +.+.+.+ ..| ..++..+....+. .-+|-++.++.+.+... +.......+.+...+..+-
T Consensus 5 LS~Elq~yf~~-It~a~~~---~~r---~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 5 LPKELQLYFDK-ILSMIKS---DMK---DIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp SCHHHHHHHHH-HHHHHTS---TTH---HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHH-HHHHHHh---HHH---HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 55665555433 3333332 223 3455555554443 45677777777766543 3333344444444444322
Q ss_pred ccccccCCCCCCcchhhhHHHHHHHhccCC---CHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCC--HHH
Q 013663 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPS--AEV 237 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~~ 237 (438)
.- .+++++-.++|.++.++-.. ...+|..|.+.+..++...+......-+.++..+.+.+.|++ ...
T Consensus 78 ~l--------~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t 149 (196)
T 4atg_A 78 HV--------FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDS 149 (196)
T ss_dssp TC--------CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHH
T ss_pred CC--------ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHH
Confidence 21 23578999999999888542 238999999999998877654332223467777777666543 456
Q ss_pred HHHHHHHHHHHHh
Q 013663 238 RKLVCAAFNLLIE 250 (438)
Q Consensus 238 ~~~a~~~l~~l~~ 250 (438)
...|+..+..+..
T Consensus 150 ~YGAi~GL~~lG~ 162 (196)
T 4atg_A 150 QYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhHH
Confidence 6677777666654
No 130
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=89.14 E-value=16 Score=34.83 Aligned_cols=132 Identities=14% Similarity=0.237 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHH
Q 013663 106 DRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (438)
Q Consensus 106 ~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 184 (438)
++.+..-+..+...+-... -...|.+....+....-.=+|.|+...++- ++... +. ..--+++..
T Consensus 334 Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~-----ENa~k-f~--------e~~~~llk~ 399 (480)
T 1ho8_A 334 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS-----DNIDE-FK--------KDNYKIFRQ 399 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH-----HHSGG-GS--------SGGGHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHH-----HHHHH-HH--------hcchHHHHH
Confidence 5555554444444443332 234566666665543323346666655553 22322 21 123446666
Q ss_pred HHHhccC----------CCHHHHHHHHHHHHHHHcccchhhHHhHHH--HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 013663 185 LLQFFQS----------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ--YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (438)
Q Consensus 185 l~~~l~~----------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~ 252 (438)
+.+.+.. .++.+-.-|+.=++.++.+.|..- ..+.. .=..+.+++.++|++||.+|+.|+..++...
T Consensus 400 L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr-~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 400 LIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI-DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH-HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchh-HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 6666652 256677778888899999888431 11111 1234566788999999999999999988654
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.42 E-value=7.9 Score=30.50 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=66.8
Q ss_pred HHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC
Q 013663 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN 231 (438)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~ 231 (438)
.+..||+.+...- ..-...+..+.+-+++.++.+...|+..+-.++......|...+ ..+++.|..++.
T Consensus 31 ~ileicD~I~~~~---------~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~ 101 (149)
T 3g2s_A 31 SINGFCEQLNEDF---------EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVS 101 (149)
T ss_dssp HHHHHHHHGGGSS---------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC---------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHc
Confidence 4556666665421 12355677888888999999999999999999998877665443 356666666654
Q ss_pred C------CCHHHHHHHHHHHHHHHhhCcc
Q 013663 232 D------PSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 232 ~------~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
+ .++.|+..+++.+......++.
T Consensus 102 ~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 102 PKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp TTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 4679999999999988887654
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.24 E-value=1.7 Score=34.36 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC------CCHHHHHHHHH
Q 013663 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLG 202 (438)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~al~ 202 (438)
=.+.+..|...+.+.++++...||.+|..++++++..+...+ ....++..+.+.+.+ ++..||..++.
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei------as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~ 119 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV------GKFRFLNELIKVVSPKYLGSRTSEKVKNKILE 119 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH------TSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH------hhHHHHHHHHHHHcccccCCCCCHHHHHHHHH
Confidence 357888899999999999999999999999999998654211 125566667777753 57899999999
Q ss_pred HHHHHHcccch
Q 013663 203 SVNQFIMLMPS 213 (438)
Q Consensus 203 ~l~~~~~~~~~ 213 (438)
.+..|...+++
T Consensus 120 li~~W~~~f~~ 130 (149)
T 3g2s_A 120 LLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHhCC
Confidence 99999877653
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.88 E-value=1.9 Score=34.04 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC------CCHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGS 203 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~al~~ 203 (438)
.+.+..|...+++.++++...||.+|..++++++..+...+ ....++..+.+.+.. .+..||..++..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev------as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEV------AKFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH------TSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------hhHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 56788888999999999999999999999999998654211 135677777777763 478999999999
Q ss_pred HHHHHcccc
Q 013663 204 VNQFIMLMP 212 (438)
Q Consensus 204 l~~~~~~~~ 212 (438)
+..|...++
T Consensus 111 i~~W~~~f~ 119 (148)
T 1mhq_A 111 LFSWTVWFP 119 (148)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHcC
Confidence 999987765
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.46 E-value=5.8 Score=30.90 Aligned_cols=76 Identities=7% Similarity=0.015 Sum_probs=55.6
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
...+..+.+-+++.++.+...|+..+-.++......|...+ ..+++.+..++...++.|+..+++.+......++.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 55667777888888999999999999999988776665433 34555454444446789999999988888776543
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.89 E-value=11 Score=30.26 Aligned_cols=77 Identities=5% Similarity=0.001 Sum_probs=55.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCcc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~-~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
-...+..|.+-+++.++.++..|+..+-.++......|...+ ..+++.+..++.. .++.|+..+++.+......++.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 355667788888889999999999999999988776665433 2355545444432 5678999998888877766543
No 136
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=85.67 E-value=15 Score=30.96 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHHHHhhhhhh-cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL 140 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l 140 (438)
+..-+.|.+|+.++...-. .++++....+. ..+. -.+..+.-..|.+++.++...+ ..+.+.+...+
T Consensus 66 s~~~E~r~la~~~l~~~~~----~~~~~~l~~~~----~~l~~~~nWd~~D~~a~~~~~~~~~~~----~~~~~~i~~W~ 133 (220)
T 2b6c_A 66 KTEREYQYVAIDLALQNVQ----RFSLEEVVAFK----AYVPQKAWWDSVDAWRKFFGSWVALHL----TELPTIFALFY 133 (220)
T ss_dssp SSSHHHHHHHHHHHHHTGG----GCCHHHHHHGG----GGTTTTCSHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHh----hCCHHHHHHHH----HHhccCCcHHHHHHHHHHHHHHHHHCh----HHHHHHHHHHH
Confidence 5668889999988865422 24444433322 2222 3567777777777887776532 12567788899
Q ss_pred ccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhH
Q 013663 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (438)
Q Consensus 141 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (438)
.+++.-+|+.|+..+ ++. .. ..+...+++.+...+.|++..|+.+.-..|..+....|+...
T Consensus 134 ~s~~~w~rR~ai~~~------l~~-~~-------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 134 GAENFWNRRVALNLQ------LML-KE-------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp TCSSHHHHHHHHHTT------TTC-GG-------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cCCCHHHHHHHHHHH------HHH-HH-------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 999988888887644 121 11 124566778777799999999999999999888877665433
No 137
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=85.63 E-value=20 Score=32.32 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=70.7
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHcccch--hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccccc
Q 013663 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (438)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 259 (438)
+..++......+......++++|..++.+... .+.. -+.+++-+..++...+..+-+.+++.|..++...+..+. .
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~-l 239 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP-L 239 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-H
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch-H
Confidence 34566666667888888999999988876421 1111 145677777777767788888999999888876543332 1
Q ss_pred HHHHH------------HHHhhhhc---CCChHHHhHHHHHHHHhhcc
Q 013663 260 LRNLF------------EYMLQVNK---DTDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 260 ~~~li------------~~~~~~~~---~~~~~v~~~a~~~~~~~~~~ 292 (438)
+..-+ +-++..++ ..+.++...|+.++..+...
T Consensus 240 v~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ 287 (339)
T 3dad_A 240 FIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc
Confidence 11111 12333443 46888899999888876554
No 138
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=85.54 E-value=5.1 Score=34.59 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=71.9
Q ss_pred hhhhHHHHHHHhccCC--CHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh-
Q 013663 177 PINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV- 251 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~- 251 (438)
+++..+-++++.-+.. .+.+|..++..++.+++.-......++ ..+++.+...++.+++--|.-|.-.+.++...
T Consensus 97 ~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 97 HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 3444444455544443 467999999999999986544333332 25778777877777777777777777766642
Q ss_pred --------CcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccC
Q 013663 252 --------RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (438)
Q Consensus 252 --------~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~ 293 (438)
.++.|.....-+-..+.+..++.+..+-+..+.+-..+++.+
T Consensus 177 ~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 177 TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 123332212222223334455677788888888888888763
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.22 E-value=2.8 Score=34.06 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC------CCHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGS 203 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~al~~ 203 (438)
.+.+..|...+.+.++.+...||.+|..++++++..+...+ ....++..+.+.+.. .+..||..++..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev------as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 122 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV------GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIEL 122 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH------TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 56788899999999999999999999999999987654211 124556666666652 468999999999
Q ss_pred HHHHHcccc
Q 013663 204 VNQFIMLMP 212 (438)
Q Consensus 204 l~~~~~~~~ 212 (438)
+..|...++
T Consensus 123 i~~W~~~f~ 131 (171)
T 1juq_A 123 LYSWTMALP 131 (171)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHcC
Confidence 999987765
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.20 E-value=13 Score=29.97 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC------CCCHHHHHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN------DPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~------~~~~~~~~~a~~~l~~l~ 249 (438)
-...+..|.+-+++.++.+...|+..|-.++......|...+ ..+++.|..++. ..+..|+..+++.+....
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 355677788888999999999999999999998876665433 345666666553 235789999999998888
Q ss_pred hhCcc
Q 013663 250 EVRPS 254 (438)
Q Consensus 250 ~~~~~ 254 (438)
..++.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 76543
No 141
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=84.96 E-value=8.2 Score=29.54 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH-Hhh-ccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFI-LAR-AEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~i-l~~-~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+|.....+++..+|...++...- +.|...++++.. |.|...+... +.. -+..++..|...+.+|+...... -
T Consensus 1 ~p~eel~kki~~ll~EY~~~~D~---~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~--~ 74 (129)
T 2nsz_A 1 QPVNHLVKEIDMLLKEYLLSGDI---SEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS--T 74 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT--C
T ss_pred CcHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC--C
Confidence 36666677888888888776644 889999998863 4443322222 111 11445577888888998887543 4
Q ss_pred CCHhhHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 86 MSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
++.++...-...+++.+.+ .-|.....++..++.....
T Consensus 75 is~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 75 ITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHC
Confidence 7777766666666676654 3567777777777776654
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.34 E-value=11 Score=29.68 Aligned_cols=76 Identities=13% Similarity=0.050 Sum_probs=58.8
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHh
Q 013663 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND------PSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~~------~~~~~~~~a~~~l~~l~~ 250 (438)
...+..+.+-+++.++.+...|+..|-.++......|...+ ..+++.+..++.. .++.|+..+++.+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44566677788889999999999999999998877665544 4677777776643 367999999999988887
Q ss_pred hCcc
Q 013663 251 VRPS 254 (438)
Q Consensus 251 ~~~~ 254 (438)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 6543
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.27 E-value=28 Score=32.87 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHHHHHHHcccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHh----hhhc-C
Q 013663 200 SLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML----QVNK-D 273 (438)
Q Consensus 200 al~~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~----~~~~-~ 273 (438)
-+.-+..++..++ ..+.+.+..++..+...+.++.-+|...|+..+..--- -..+..+...++|.++ +..+ +
T Consensus 304 FL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i--~~li~~n~~~IlPii~p~L~~~s~~H 381 (449)
T 2npp_B 304 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI--MSLISDNAAKILPIMFPSLYRNSKTH 381 (449)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH--HHHHHTTHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH--HHHHHhchhhhHHhhHHHHHHHHHHh
Confidence 3444445555443 34455556667777777777777888887765421100 0122233344555544 3333 2
Q ss_pred CChHHHhHHHHHHHHhhcc
Q 013663 274 TDDDVALEACEFWHSYFEA 292 (438)
Q Consensus 274 ~~~~v~~~a~~~~~~~~~~ 292 (438)
=+..|+..|...+..+.+.
T Consensus 382 Wn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 382 WNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp SSTTHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3778999999888877764
No 144
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.02 E-value=2.1 Score=33.43 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
=.+.+..+...+...++++...||.+|..++++++..+...+ ....++..+...+...++.|+..++..+..|.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev------as~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV------CSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH------SSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH------hhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 357888888999999999999999999999999987653211 11334455555555678899999999999887
Q ss_pred cccc
Q 013663 209 MLMP 212 (438)
Q Consensus 209 ~~~~ 212 (438)
...+
T Consensus 114 ~~f~ 117 (140)
T 3ldz_A 114 DEFK 117 (140)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 6553
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.79 E-value=3.2 Score=33.37 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=66.8
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
+++...-..+|..|. .. +..=.+.+..|...+...++++...||.+|..++++++..+...+ ....++.
T Consensus 30 ~~Dw~~~leicD~I~----~~-~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev------as~~Fl~ 98 (163)
T 1x5b_A 30 TEDWSLIMDICDKVG----ST-PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV------CSRDFAT 98 (163)
T ss_dssp SCCHHHHHHHHHHHH----HS-SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH------TSHHHHH
T ss_pred CcCHHHHHHHHHHHh----CC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH------hhHHHHH
Confidence 445555444443333 22 223357888899999999999999999999999999987654211 1133455
Q ss_pred HHHHhccC-CCHHHHHHHHHHHHHHHcccc
Q 013663 184 RLLQFFQS-PHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 184 ~l~~~l~~-~~~~vr~~al~~l~~~~~~~~ 212 (438)
.+...+.. .++.||..++..+..|...++
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 55555544 678999999999999887654
No 146
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=83.07 E-value=26 Score=31.47 Aligned_cols=178 Identities=12% Similarity=0.157 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhccCChhhH-hHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHH----hccC---CCHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHM-EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ----FFQS---PHTSLRKLSL 201 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r-~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~----~l~~---~~~~vr~~al 201 (438)
|.++..++.-.++..|..| -..+.++..++..+...+. ..++.++..++. .++. .-|+.|..=.
T Consensus 72 ppLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~--------~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff 143 (321)
T 1w9c_A 72 PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHIT--------AEIPQIFDAVFECTLNMINKDFEEYPEHRTNFF 143 (321)
T ss_dssp HHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGG--------GGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHhcccccChHHHHHHH
Confidence 4444443333344445555 3567778888888876543 345556555543 3343 4688998888
Q ss_pred HHHHHHHcccchhhH----HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcc-------cccccHHHHHHHHhhh
Q 013663 202 GSVNQFIMLMPSALF----VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS-------FLEPHLRNLFEYMLQV 270 (438)
Q Consensus 202 ~~l~~~~~~~~~~~~----~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~-------~~~~~~~~li~~~~~~ 270 (438)
+.+..+....-..+. +.+..++..+....++++.++...+++++.++..+..+ ++..|.-.++.-++.+
T Consensus 144 ~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~V 223 (321)
T 1w9c_A 144 LLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSV 223 (321)
T ss_dssp HHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 888887765433322 34567788888888999999999999998888765431 2333444555555555
Q ss_pred hcCCC--hHHHhHH--HHHHHHhhcc-----CC-------ChhhHHhhHHHHHHHHHhccC
Q 013663 271 NKDTD--DDVALEA--CEFWHSYFEA-----QL-------PHENLKEFLPRLVPVLLSNMI 315 (438)
Q Consensus 271 ~~~~~--~~v~~~a--~~~~~~~~~~-----~~-------~~~~~~~~l~~l~~~l~~~l~ 315 (438)
+.|.+ ...+.++ +..+-.+.+. +. ....+..|+..++...+..+.
T Consensus 224 lTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~ 284 (321)
T 1w9c_A 224 VTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQ 284 (321)
T ss_dssp HHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSC
T ss_pred HhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCCCC
Confidence 54431 1223333 3333334433 10 122455666666665566664
No 147
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=83.01 E-value=15 Score=28.70 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (438)
.-+.+...+.+.+....+.++..+|+++.+|++.++..+.. .....+.+.|.......+..+|....+.+..|
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~-------~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTI-------YFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHH-------HHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44678888888888788999999999999999998764321 12233444555565666889999999999888
Q ss_pred Hcc
Q 013663 208 IML 210 (438)
Q Consensus 208 ~~~ 210 (438)
-..
T Consensus 113 ~~~ 115 (144)
T 1sz9_A 113 LNP 115 (144)
T ss_dssp TSG
T ss_pred hCc
Confidence 755
No 148
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=81.08 E-value=21 Score=30.15 Aligned_cols=138 Identities=11% Similarity=0.051 Sum_probs=87.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcc
Q 013663 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (438)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (438)
+.++..++....|..++.++....+. ..++-++.+-..+.. +++.+......+++.++...+
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~----~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~------------- 122 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQR----FSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL------------- 122 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGG----CCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-------------
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhh----CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-------------
Confidence 33444556667777777777655422 124556655555543 466666554455555554333
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
..+.+.+.....+++.-+|..|+.++. .+... .....++..+-....|++.-+++.+...|.++...+|+..
T Consensus 123 --~~~~~~i~~W~~s~~~w~rR~ai~~~l---~~~~~---~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 123 --TELPTIFALFYGAENFWNRRVALNLQL---MLKEK---TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp --GGHHHHHHHHTTCSSHHHHHHHHHTTT---TCGGG---CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHH---HHHHC---CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 235567889999999999998887553 22221 1223455555557788889999999999999998877655
Q ss_pred cccH
Q 013663 257 EPHL 260 (438)
Q Consensus 257 ~~~~ 260 (438)
.+++
T Consensus 195 ~~fl 198 (220)
T 2b6c_A 195 EELM 198 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 149
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=78.90 E-value=17 Score=28.65 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHHHH-Hhh-ccCCCHHHHHHHHHHHHHHHHhhhcc
Q 013663 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFI-LAR-AEGKSVEIRQAAGLLLKNNLRTAYKS 85 (438)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~~i-l~~-~~~~~~~~R~~A~~~Lk~~i~~~w~~ 85 (438)
+|.....+++..+|...++...- +.|...++++.. |.|...+... +.. -+..+...|...+.+|+...... -
T Consensus 3 ~~~eel~kki~~lL~EY~~~~D~---~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~--~ 76 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSGDI---SEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS--T 76 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT--C
T ss_pred ChHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC--C
Confidence 45556667788888888776644 889999998864 4443322222 111 11335677888888998887543 4
Q ss_pred CCHhhHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 86 MSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
++.++...-...+++.+.+ .-|.....++..++.....
T Consensus 77 is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHC
Confidence 7777766555666666654 3566677777777766654
No 150
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.09 E-value=18 Score=32.15 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=80.2
Q ss_pred CchHHHHHHHHHHhccC------ChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHH
Q 013663 127 AGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS 200 (438)
Q Consensus 127 ~~w~~ll~~l~~~l~~~------~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~a 200 (438)
..+..-+..+...++++ +......||..|..+.-++-..+. + ..+-..++..|. +.....+.+|..|
T Consensus 18 yeFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~K-----I-~~~ef~lL~nL~-~~~~~~~~~rE~a 90 (315)
T 3qml_C 18 YEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYK-----I-ITHEFALLANLS-LNENLPLTLRELS 90 (315)
T ss_dssp CTTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHH-----H-HHHHHHHHHHHH-HCTTSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhH-----H-HhCcHHHHHHHH-hhccCChhHHHHH
Confidence 34555566666666554 333456666666544433322110 0 001122333343 3344677899999
Q ss_pred HHHHHHHHcccchhhH---HhHHHHHHHHHH----hhCC---CCHHHHHHHHHHHHHHHhhCccccccc-HHHHHHHHhh
Q 013663 201 LGSVNQFIMLMPSALF---VSMDQYLQGLFL----LSND---PSAEVRKLVCAAFNLLIEVRPSFLEPH-LRNLFEYMLQ 269 (438)
Q Consensus 201 l~~l~~~~~~~~~~~~---~~~~~ll~~l~~----~~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~li~~~~~ 269 (438)
.++++++++..|..+. ...+.++..+|. .... ...-+.+..+.++..++... ..|..+ +..+..++-
T Consensus 91 arII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F~~~~m~~L~~ly~- 168 (315)
T 3qml_C 91 TRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDLPIYSTVVLQNVYE- 168 (315)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--CCHHHHHHHHH-
T ss_pred HHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-HhhhhccHHHHHHHHc-
Confidence 9999999999986542 122334444433 2221 12345556666676666554 323332 234444332
Q ss_pred hhcCCChHHHhHHHHHHHHhh
Q 013663 270 VNKDTDDDVALEACEFWHSYF 290 (438)
Q Consensus 270 ~~~~~~~~v~~~a~~~~~~~~ 290 (438)
. ...+..++..+++++..+-
T Consensus 169 ~-~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 169 R-NNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp H-TTTCHHHHHHHHHHHHHHH
T ss_pred c-CCCCHHHHHHHHHHHHHHc
Confidence 2 2447788888887776654
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.36 E-value=27 Score=29.60 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCcc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS 254 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~~ 254 (438)
-...+..|.+-+++.++.+...|+..|-.++......|...+ ..+++.|..+++ ..++.|+..+++.+......+..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 356777888888999999999999999999887765554332 234444433332 35678999999988888876543
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=75.44 E-value=6.5 Score=30.56 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcc---CchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccc
Q 013663 114 GTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (438)
Q Consensus 114 a~~la~i~~~~~~---~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (438)
+..+..|++.... +.+.++++.|...+.+.+++++.-||.+|.++|..-+..
T Consensus 29 gylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~ 83 (140)
T 1vdy_A 29 VYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE 83 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH
Confidence 4556667666422 446999999999999999999999999999999866554
No 153
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=72.85 E-value=21 Score=30.37 Aligned_cols=137 Identities=8% Similarity=0.036 Sum_probs=78.3
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhcc-CChhhHhHH-HHHHHHHHhccccccccCCCCCCcch
Q 013663 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECP 177 (438)
Q Consensus 100 ~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~r~~a-l~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (438)
.+..++....|..+...+....+... ++-++.+...+.. +++.+.... -.+++.++...+.
T Consensus 68 ~L~~~~~~E~r~~ai~~l~~~~k~~~----~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------------- 130 (232)
T 3jxy_A 68 ELWDLPEREFQAAALDIMQKYKKHIN----ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------------- 130 (232)
T ss_dssp HHHTSSBHHHHHHHHHHHHHTGGGCC----GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------------
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------------
Confidence 33445555566665555543222211 2223333333332 456655433 2445555554332
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCccccc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 257 (438)
.+.+.+.....+++.-+|..|+.++..+ .. ......++..+...+.|++.-+++.+..+|.++...+|+...
T Consensus 131 --~~~~~l~~W~~s~~~w~rR~ai~~~l~~---~~---~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 131 --LISAYIPKWIASDNIWLQRAAILFQLKY---KQ---KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp --GGGGTHHHHHHSSCHHHHHHHHHTTTTC---GG---GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHH---Hh---CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 1335567888899999998888665322 11 112223445555567788899999999999999988877655
Q ss_pred ccHH
Q 013663 258 PHLR 261 (438)
Q Consensus 258 ~~~~ 261 (438)
+++.
T Consensus 203 ~fl~ 206 (232)
T 3jxy_A 203 EYVQ 206 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 154
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=71.99 E-value=63 Score=29.98 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=98.4
Q ss_pred hccCCHhhHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhc---cC-ChhhHhHHHHH
Q 013663 83 YKSMSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLD---SN-DINHMEGAMDA 154 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~---~~-~~~~r~~al~~ 154 (438)
+.+-++..++.++..+-...+. -.+.+|+++..++..+.-.. ..+.-.+++..+-..++ -+ ...++..
T Consensus 138 fdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~f---- 213 (403)
T 3fga_B 138 FDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIF---- 213 (403)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHH----
T ss_pred cCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHH----
Confidence 4455777888888777665543 35678888877777655322 22344455554444333 22 1222222
Q ss_pred HHHHHhccccccccCCCCCCcchhhhHHHHHHHhccC------------------CCHHHHHHHHHHHHHHHcccc-hhh
Q 013663 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------------------PHTSLRKLSLGSVNQFIMLMP-SAL 215 (438)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------------------~~~~vr~~al~~l~~~~~~~~-~~~ 215 (438)
+.. .+-+.... .-+..+..++...+.+.+.. .+..=...-+.-+..++..++ ..+
T Consensus 214 l~~---vLlPLHk~---~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f 287 (403)
T 3fga_B 214 LLK---VLLPLHKV---KSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 287 (403)
T ss_dssp HHH---TTTGGGGS---TTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHH---HHHHHHcC---CcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHH
Confidence 211 11111111 00112233333333333321 122222233344445555543 344
Q ss_pred HHhHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HHHHhhCcccccccHHHHHHHHhhhhcC-CChHHHhHHHHHHHHh
Q 013663 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAF-----NLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSY 289 (438)
Q Consensus 216 ~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l-----~~l~~~~~~~~~~~~~~li~~~~~~~~~-~~~~v~~~a~~~~~~~ 289 (438)
.+.+..++..+...+.++.-+|...|+..+ ..++..+.. ..+|-++|.+.+..+. =+..|+..+...+..+
T Consensus 288 ~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~---~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l 364 (403)
T 3fga_B 288 VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA---KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLF 364 (403)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH---HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555556666666677777778887777654 333332221 1233444444444443 3788999998888887
Q ss_pred hcc
Q 013663 290 FEA 292 (438)
Q Consensus 290 ~~~ 292 (438)
.+.
T Consensus 365 ~e~ 367 (403)
T 3fga_B 365 MEM 367 (403)
T ss_dssp HTT
T ss_pred HHh
Confidence 765
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=70.52 E-value=12 Score=29.83 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=64.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhc-cCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (438)
+++...-..+|..|. .. +..=.+.+..|...++ +.++.+...||.+|..++++++..+...+ ....++
T Consensus 31 ~~Dw~~~leicD~I~----~~-~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev------a~~~fl 99 (157)
T 1elk_A 31 SEDWALNMEICDIIN----ET-EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV------ASQDFV 99 (157)
T ss_dssp SCCHHHHHHHHHHHH----HS-SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH------TSHHHH
T ss_pred CcCHHHHHHHHHHHh----CC-CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH------hhHHHH
Confidence 345554444444332 22 2333678888999997 47899999999999999999987654211 123455
Q ss_pred HH-HHHhcc---CCCHHHHHHHHHHHHHHHccc
Q 013663 183 PR-LLQFFQ---SPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 183 ~~-l~~~l~---~~~~~vr~~al~~l~~~~~~~ 211 (438)
.. +.+.+. +++..||..++..+..|...+
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 54 455553 356789999999999887754
No 156
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=70.15 E-value=59 Score=28.86 Aligned_cols=155 Identities=6% Similarity=0.070 Sum_probs=79.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhc------cCchHHHHHHHHHHhcc-------CChhhHhHHHHHHHHHHhccccccccCCC
Q 013663 105 ADRHIRSTVGTIVSVVVQLGG------IAGWLELLQALVTCLDS-------NDINHMEGAMDALSKICEDIPQVLDSDVP 171 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~------~~~w~~ll~~l~~~l~~-------~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (438)
.++.+|..++.+|+...+..| ...||.++..++..+.+ .........+.++..++...... ..
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-~~--- 157 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-PI--- 157 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC------
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-hh---
Confidence 345567777777776665542 13577777777665543 12345555666666555543211 10
Q ss_pred CCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcc-cch-----------hhH---HhHHHHHHHHHHhhCCC--C
Q 013663 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPS-----------ALF---VSMDQYLQGLFLLSNDP--S 234 (438)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~-~~~-----------~~~---~~~~~ll~~l~~~~~~~--~ 234 (438)
..+..++. ++... ..+..++..++..+..+... .+. ... +.+..+.+.+.+++++. +
T Consensus 158 ----~~m~~L~~-ly~~~-~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~d 231 (315)
T 3qml_C 158 ----YSTVVLQN-VYERN-NKDKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQNKSID 231 (315)
T ss_dssp ----CCHHHHHH-HHHHT-TTCHHHHHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHTCTTSC
T ss_pred ----ccHHHHHH-HHccC-CCCHHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHhccccC
Confidence 12333333 33322 44788888888877776631 110 111 22223444455555542 3
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhh
Q 013663 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~ 270 (438)
+.-.+.-+..|..+-+.+++.+++ -..++.++.+.
T Consensus 232 E~~~r~fF~~L~~ik~~~~~~lK~-~~~FLnWLa~E 266 (315)
T 3qml_C 232 ELHTRTFFDTLYNLKKIFKSDITI-NKGFLNWLAQQ 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCC-CHHHHHHHHHH
Confidence 445556677777776666555544 34566665543
No 157
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=70.03 E-value=69 Score=29.61 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=64.9
Q ss_pred CCHhhHHHHHHHhhhhhhcC-cHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 86 MSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
+.++-+..+...++.+.... -..--.+++.++..+...++. .-..++..++...--++..-...-+.-+..+++.++.
T Consensus 251 LKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~ 329 (392)
T 2jak_A 251 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP 329 (392)
T ss_dssp CCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCH
T ss_pred CcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch-hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 45566666666666666543 233345788888888876631 2223444444444333333333445556666665554
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHH
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (438)
. -+......++..+..++++++.+|-..|+...
T Consensus 330 ~-------~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 330 S-------EFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp H-------HHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred H-------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 2 01234566777788899999999988877544
No 158
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.99 E-value=8.3 Score=32.83 Aligned_cols=98 Identities=8% Similarity=0.115 Sum_probs=65.5
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHH
Q 013663 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (438)
Q Consensus 104 ~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (438)
+++...--.++..| ... +..=.+.+..|...+.+.++++...||.+|..++++.+..+...+ ....++.
T Consensus 23 ~~dw~~ileicD~I----~~~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei------as~~fl~ 91 (226)
T 3zyq_A 23 ETDWESILQICDLI----RQG-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV------ANKQTME 91 (226)
T ss_dssp SCCHHHHHHHHHHH----HTT-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH------SSHHHHH
T ss_pred CcCHHHHHHHHHHH----hCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh------ccHHHHH
Confidence 34555444444443 222 233368899999999999999999999999999999987543211 1133344
Q ss_pred HHHHhcc-CCCHHHHHHHHHHHHHHHcccc
Q 013663 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLMP 212 (438)
Q Consensus 184 ~l~~~l~-~~~~~vr~~al~~l~~~~~~~~ 212 (438)
.+.+.+. .++..|+..++..+..|...++
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4444443 3578899999999988876553
No 159
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=68.87 E-value=11 Score=35.81 Aligned_cols=70 Identities=10% Similarity=0.267 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcc----------CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhh--HHHHHHHhccCCCHHHHH
Q 013663 131 ELLQALVTCLDS----------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI--FLPRLLQFFQSPHTSLRK 198 (438)
Q Consensus 131 ~ll~~l~~~l~~----------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~~~~~~vr~ 198 (438)
+++..|++.+.+ .++.....|+.=++.+++..|..- ..+.. .=..+++++++++++||.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr---------~i~~~lg~K~~VM~Lm~h~d~~Vr~ 465 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI---------DVLDKTGGKADIMELLNHSDSRVKY 465 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH---------HHHHHHSHHHHHHHHTSCSSHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchh---------HHHHHcCcHHHHHHHhcCCCHHHHH
Confidence 567777777763 356777788888999999888631 11111 235688999999999999
Q ss_pred HHHHHHHHHHc
Q 013663 199 LSLGSVNQFIM 209 (438)
Q Consensus 199 ~al~~l~~~~~ 209 (438)
.|+.|+..++.
T Consensus 466 ~AL~avQklm~ 476 (480)
T 1ho8_A 466 EALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 160
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=68.52 E-value=40 Score=26.88 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
.-+....++...++.... +.|...++++.. .|.++..+...-. ...+.-|.+++.+|..... ..++++
T Consensus 9 ~~kk~~~ii~EYf~~~D~---~Ea~~~l~eL~~p~~~~~~V~~~I~~al---drk~~ere~~s~LL~~L~~---~~ls~~ 79 (165)
T 2rg8_A 9 FEKTLTPIIQEYFEHGDT---NEVAEMLRDLNLGEMKSGVPVLAVSLAL---EGKASHREMTSKLLSDLCG---TVMSTT 79 (165)
T ss_dssp HHHHHHHHHHHHHHHCCH---HHHHHHHHHHTCSGGGGHHHHHHHHHHH---TSCHHHHHHHHHHHHHHBT---TTBCHH
T ss_pred HHHHHHHHHHHHHcCCCH---HHHHHHHHHhCCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHH---CCCCHH
Confidence 334577777777776644 788888888763 3445444433332 4567789999999988632 467888
Q ss_pred hHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhh
Q 013663 90 NQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~ 124 (438)
+...-...+++.+.+ .-|.+...++..++..+..+
T Consensus 80 ~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~ 117 (165)
T 2rg8_A 80 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 117 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcC
Confidence 776666777777765 36778888888888887654
No 161
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=67.92 E-value=1.4e+02 Score=32.44 Aligned_cols=201 Identities=11% Similarity=0.099 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhc------CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHHHH-----------H
Q 013663 34 SQIWQQLQQYSQ------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----------S 96 (438)
Q Consensus 34 ~~A~~~L~~~~~------~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~i~-----------~ 96 (438)
.-|+.+|+.+.. +.-+-..++-++. +.+...|..|-.++|++|... .++........ .
T Consensus 325 ~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~---s~n~~~rk~aE~ilrkkI~~G--~it~~ll~~~f~~h~~vL~~~f~ 399 (1323)
T 3s4w_B 325 TISEAWFKAIERIESAAEHKSLDVVMLLIIY---STSTQTKKGVEKLLRNKIQSD--CIQEQLLDSAFSTHYLVLKDICP 399 (1323)
T ss_dssp HHHHHHHHHHHHGGGSTTCCTHHHHHHHHHH---HHCHHHHHHHHHHHHHHHTTT--CSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhCCCcccccchhHHHHHHHHH---cCCchhHHHHHHHHHHHHHcC--CchHHHHHHHHHhhHHHHHHHHH
Confidence 345666665542 1112223334443 345677888999999999753 23333222111 1
Q ss_pred Hhhh----hhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCC
Q 013663 97 ELLP----CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (438)
Q Consensus 97 ~ll~----~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (438)
.++. ++.+.++.|+.-.+.....+++....-.-.+++..|+..+.+++......|+.+|..+++..+..+.+
T Consensus 400 siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~---- 475 (1323)
T 3s4w_B 400 SILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRL---- 475 (1323)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHH----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhH----
Confidence 1222 23467889998888888888876421123689999999888888888888999999999877765431
Q ss_pred CCcchhhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHcccchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013663 173 LAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (438)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~ 249 (438)
...++..++..+.+- ..++|.. +..|+.++-..+......+ ..+.=.+-+.+.+++.+.|+...-.-+.++
T Consensus 476 -----~a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 476 -----NAAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp -----THHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
Confidence 233444455555553 3556654 6666654421111000011 122222334455666666664433333333
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.89 E-value=11 Score=31.93 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhcc-CCCHHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~ 206 (438)
.=.+.+..|...+.+.++.+...||.+|..++++.+..+...+ ....++..+...+. .++..||..+++.+..
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ev------a~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEV------FTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH------SSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHH------HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4457888899999999999999999999999999987553211 11234444444443 4578899999988888
Q ss_pred HHccc
Q 013663 207 FIMLM 211 (438)
Q Consensus 207 ~~~~~ 211 (438)
|...+
T Consensus 113 W~~~f 117 (220)
T 1dvp_A 113 WAYAF 117 (220)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87654
No 163
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.39 E-value=35 Score=30.46 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013663 7 WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (438)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w 83 (438)
|+|....-+++..+|...++...- +.|...++++.. +++++...+.... +...+..|...+.+|+......
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~---~EA~~ci~EL~~p~f~~e~V~~ai~~al--E~~~~~~re~~~~LL~~L~~~~- 232 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDI---SEAEHCLKELEVPHFHHELVYEAIIMVL--ESTGESTFKMILDLLKSLWKSS- 232 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHCCGGGHHHHHHHHHHHHH--TCCSSHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHcCCCcchHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHCC-
Confidence 456666667788888887766533 788999988874 2333332222221 2444667888999998887653
Q ss_pred ccCCHhhHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 84 KSMSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
-++.++...-...++..+.+ .-|.....++..++.....
T Consensus 233 -~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~ 274 (307)
T 2zu6_B 233 -TITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 274 (307)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence 57777766555666666654 3577777777777777654
No 164
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=66.35 E-value=42 Score=25.70 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=71.7
Q ss_pred cCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcccc
Q 013663 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (438)
.++.+....+...|+..|+|.+.-+...++..++.+- ..++|.+.+.++++|..= -.+++..++..++.
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------~~l~p~I~~vl~s~D~~W---~ywil~~lv~~~~~ 91 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ--------SIAMPHILTILQGNDIMW---KYWVIKLMIPYLIY 91 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH--------HHHHHHHHHHHHSSCHHH---HHHHHHHHGGGCCH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc--------HhhHHHHHHHHHcCChHH---HHHHHHHHHHcCCH
Confidence 4566777777788999999988877777777776542 478888888888776532 35667777777765
Q ss_pred ccccCCCCCCcchhhhHHHHHHHhccCC-----CHHHHHHHHHHHHHH
Q 013663 165 VLDSDVPGLAECPINIFLPRLLQFFQSP-----HTSLRKLSLGSVNQF 207 (438)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~-----~~~vr~~al~~l~~~ 207 (438)
. ....+.+.+.+...++ ..+|...|-+.|..+
T Consensus 92 ~-----------~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 92 P-----------NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp H-----------HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 3 3566777777777765 456777777777665
No 165
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=66.25 E-value=50 Score=28.06 Aligned_cols=75 Identities=13% Similarity=0.000 Sum_probs=54.3
Q ss_pred hcCCcHHHHHHHHHhhccCCCHHHHHHHHH----HHHHHHHhhhccCCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHH
Q 013663 44 SQFPDFNNYLAFILARAEGKSVEIRQAAGL----LLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSV 119 (438)
Q Consensus 44 ~~~p~~~~~l~~il~~~~~~~~~~R~~A~~----~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~ 119 (438)
.+.|.....+...+. +.+.=.|.+|.+ +|-+ ...+.++......+...+...+.++...|+++++.+|..
T Consensus 104 ~~~~~~~~~~~~W~~---s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~ 177 (235)
T 1t06_A 104 SESNIAQDVADKWIA---SGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNT 177 (235)
T ss_dssp TTSSSHHHHHHHHHH---SCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHc---CcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHH
Confidence 345555555555554 678888888887 5444 122345667777777777778899999999999999999
Q ss_pred HHHhh
Q 013663 120 VVQLG 124 (438)
Q Consensus 120 i~~~~ 124 (438)
+++..
T Consensus 178 ~gk~~ 182 (235)
T 1t06_A 178 VAISY 182 (235)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99874
No 166
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.01 E-value=64 Score=27.03 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=53.0
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCc
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP 253 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~~~~ 253 (438)
-...+..|.+-+++.++.+...|+..|-.++......|...+ ..+++.+..++. ..+..|+..+++.+......+.
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 355667778888889999999999999999888765553322 234444444333 3567899988888887776543
No 167
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=59.70 E-value=86 Score=27.07 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=65.4
Q ss_pred hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc---------hhh
Q 013663 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---------SAL 215 (438)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---------~~~ 215 (438)
+..|-.++.+++.+++.-.+++-+ ++ -..+++|.++..+..++.--|..|.-.+..++..-. +.|
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~----fL--L~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF 189 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVIN----FL--LTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERF 189 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHH----HH--HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHH----HH--HhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHH
Confidence 578999999999999864443211 10 125689999999999998888888888877664321 111
Q ss_pred HHhHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHhh
Q 013663 216 FVSMDQYLQGL-FLLSNDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 216 ~~~~~~ll~~l-~~~~~~~~~~~~~~a~~~l~~l~~~ 251 (438)
. .+..++..+ ..+.+++++.+.+.+++|-.++.++
T Consensus 190 ~-av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 190 S-HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp H-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred H-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 1 122233222 2345577788888888888877754
No 168
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=59.48 E-value=63 Score=25.45 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=54.3
Q ss_pred hhhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHH-HHHhhC---CCCHHHHHHHHHHHHHHHh
Q 013663 178 INIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQG-LFLLSN---DPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 178 ~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~-l~~~~~---~~~~~~~~~a~~~l~~l~~ 250 (438)
-...+..+.+-++ +.++.++..|+..+-.++......|...+ ..+++. +..++. ++...|+..+++.+.....
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3556777888887 57899999999999999998876665433 245655 455443 3456899999888887776
Q ss_pred hC
Q 013663 251 VR 252 (438)
Q Consensus 251 ~~ 252 (438)
.+
T Consensus 131 ~f 132 (157)
T 1elk_A 131 AF 132 (157)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 169
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.14 E-value=54 Score=29.97 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013663 6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (438)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~ 82 (438)
+|+|..+..+.+..+|....+... .+.|...++++.. +++++...+.... +..+...|...+.+|+......
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D---~~EA~~ci~EL~~p~fhhe~V~~av~~aL--E~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGD---ISEAEHCLKELEVPHFHHELVYEAIVMVL--ESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHCCTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHhccCCC---HHHHHHHHHHccCCcchHHHHHHHHHHHH--ccCchHHHHHHHHHHHHHHHCC
Confidence 445666677778888888777653 3889999998874 2333332222211 1334567777888888877653
Q ss_pred hccCCHhhHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 83 YKSMSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
-++.++...-...++..+.+ .-|.....++..++.....
T Consensus 284 --lls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~ 325 (358)
T 3eiq_C 284 --TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 325 (358)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence 46776655555556666554 3566677777777766654
No 170
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=58.26 E-value=58 Score=24.64 Aligned_cols=101 Identities=7% Similarity=-0.012 Sum_probs=62.1
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcc
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (438)
..|+.|+.....|......++... ..-+++...+.+.+....+..|...+.++..++......-. ..+..
T Consensus 12 ~~L~~L~~s~~sI~~~s~w~l~h~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~----~~f~~ 81 (132)
T 4flb_A 12 RKFQSVTNTMESIQGLSSWCIENK------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNA----IIFRE 81 (132)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTC----THHHH
T ss_pred HHHHHCcccHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccCh----HHHHH
Confidence 344556666677777666666532 22356777777777777888999999999999987643211 11112
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (438)
.+...++..+..+. +++.|....+++.-|-+
T Consensus 82 ~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 82 SFADVLPEAAALVK--DPSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHTTHHHHHHTTC--STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcc
Confidence 33444555555443 34566666777766654
No 171
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=54.95 E-value=59 Score=25.11 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=48.6
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHH---HHHHHHHhhC--CC----C--HHHHHHHHHHHH
Q 013663 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ---YLQGLFLLSN--DP----S--AEVRKLVCAAFN 246 (438)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~---ll~~l~~~~~--~~----~--~~~~~~a~~~l~ 246 (438)
...++..|.+-|++.++.++..||++|--++..-++.|...+.. ++..+.++-. |+ + ..||..|-+++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999888777666655543 2333332211 21 1 467777766665
Q ss_pred HH
Q 013663 247 LL 248 (438)
Q Consensus 247 ~l 248 (438)
-+
T Consensus 127 ll 128 (140)
T 1vdy_A 127 AI 128 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=45.36 E-value=42 Score=26.37 Aligned_cols=78 Identities=9% Similarity=0.148 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHH-HHHhccC---CCHHHHHHHHHH
Q 013663 129 WLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQS---PHTSLRKLSLGS 203 (438)
Q Consensus 129 w~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~-l~~~l~~---~~~~vr~~al~~ 203 (438)
=.+.+..|...+.. .++.+...||.+|..++++++..+...+ ....++.. +.+.+.. ....||..++..
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei------ask~Fl~e~L~kl~~~~~~~~~~Vk~kil~l 124 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI------VKKEFVKENLVKLLNPRYNLPLDIQNRILNF 124 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH------SSHHHHTTTTGGGGSGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH------HhhHhHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 35788888888874 5777778899999999999998654211 01233432 4444443 356899999999
Q ss_pred HHHHHcccc
Q 013663 204 VNQFIMLMP 212 (438)
Q Consensus 204 l~~~~~~~~ 212 (438)
+..|...++
T Consensus 125 i~~Wa~~F~ 133 (152)
T 3rru_A 125 IKTWSQGFP 133 (152)
T ss_dssp HHHHHTCCS
T ss_pred HHHHHHHhC
Confidence 999988765
No 173
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.74 E-value=1.6e+02 Score=26.16 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhH
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~ 91 (438)
+....++...++.+.. +.|...++++.. .|.++..+...-. +....-|.+++.+|..... ..+++++.
T Consensus 4 k~~~~ii~EYf~~~d~---~Ea~~~l~el~~p~~~~~~v~~~i~~al---dr~~~erE~~s~LLs~L~~---~~ls~~~i 74 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDT---NEVAEMLRDLNLGEMKSGVPVLAVSLAL---EGKASHREMTSKLLSDLCG---TVMSTTDV 74 (307)
T ss_dssp HHHHHHHHHHHHHCCH---HHHHHHHHTTCCGGGGGGHHHHHHHHHH---TSCHHHHHHHHHHHHHHHH---HTBCHHHH
T ss_pred HHHHHHHHHHHcCCCH---HHHHHHHHHhCCcchHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHh---CCCCHHHH
Confidence 3455667776666544 777788887753 4555554444333 5669999999999988753 35788777
Q ss_pred HHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhh
Q 013663 92 QYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 92 ~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~ 124 (438)
..-...+++.+.+ .-|.+...++..++..+..+
T Consensus 75 ~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~d~ 110 (307)
T 2zu6_B 75 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 110 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHhcccccchHHHHHHHHHHHHHhC
Confidence 6666777777765 46777888888888877654
No 174
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.52 E-value=1.5e+02 Score=27.09 Aligned_cols=105 Identities=8% Similarity=0.039 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC----CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCC
Q 013663 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF----PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (438)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~----p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~ 87 (438)
..+.....+|...++.+.- +.|...++++... |.++..++..-. ...+..|.+++.+|....... .++
T Consensus 10 ~~~k~~~~ii~EY~~~~D~---~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL---er~~~~re~~~~LL~~L~~~~--~ls 81 (364)
T 3l6a_A 10 ELLKLTETVVTEYLNSGNA---NEAVNGVREMRAPKHFLPEMLSKVIILSL---DRSDEDKEKASSLISLLKQEG--IAT 81 (364)
T ss_dssp HHHHHHHHHHHHHHHHCCH---HHHHHHHHHHTCCGGGHHHHHHHHHHHHH---TSCHHHHHHHHHHHHHHHHTT--SSC
T ss_pred HHHHHHHHHHHHHHhCCCH---HHHHHHHHHhCCchhhHHHHHHHHHHHHH---CCChHHHHHHHHHHHHHHHCC--CCC
Confidence 3566777788887777644 8899999988752 233333322222 446888999999998887752 578
Q ss_pred HhhHHHHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhh
Q 013663 88 PSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 88 ~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~ 124 (438)
.++...-...+++.+.+ .-|.+...++..++..+...
T Consensus 82 ~~~~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~ 121 (364)
T 3l6a_A 82 SDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISE 121 (364)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcC
Confidence 77766666667777664 36777888888888887643
No 175
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=42.14 E-value=3.7e+02 Score=29.28 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhhcC-------------------CcHHH---HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 013663 32 DKSQIWQQLQQYSQF-------------------PDFNN---YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (438)
Q Consensus 32 ~r~~A~~~L~~~~~~-------------------p~~~~---~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~ 89 (438)
-|+.|+..+++--+. .+++. .+.+.+.. +.++.+|.+|..+.+..+.. .+.-
T Consensus 361 ~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~--S~~~~v~~Fg~~lY~~lF~~----fd~~ 434 (1323)
T 3s4w_B 361 TKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFH--SQDQRIILFGSLLYKYAFKF----FDTY 434 (1323)
T ss_dssp HHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHHHS----SCHH
T ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHh----ccch
Confidence 689999888753221 11222 23444554 88999999999888777654 2444
Q ss_pred hHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccc
Q 013663 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~--~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
.+..|...|+..+.+....=...+-.++..++...+ ......++.-++.++.+-+..+.+..+.+|..++-.-+.. .
T Consensus 435 ~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~-~ 513 (1323)
T 3s4w_B 435 CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG-T 513 (1323)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS-C
T ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC-c
Confidence 566777777777766543334446677777776532 1334456666667777766666667788888776433321 1
Q ss_pred cCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccc-----------------hhhHHhHHHHHHHHHHhh
Q 013663 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-----------------SALFVSMDQYLQGLFLLS 230 (438)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-----------------~~~~~~~~~ll~~l~~~~ 230 (438)
+ ....+++.-.+.+.+.+++.+.|...+-....++..+. +.....+..+++.+....
T Consensus 514 ~------~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~~~~~~~~~s~~~~~~l~~~~~~q~~~Ll~lv~~s~ 587 (1323)
T 3s4w_B 514 S------NHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMAEDRSVPSNSSQRSANVSSEQRTQVTSLLQLVHSCT 587 (1323)
T ss_dssp C------CHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTTC----------------CHHHHHHHHHHHHHHHHH
T ss_pred c------hhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHHHhccccCccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 0 01235566677889999998887643333223332221 011112234444444433
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 013663 231 NDPSAEVRKLVCAAFNLLIEV 251 (438)
Q Consensus 231 ~~~~~~~~~~a~~~l~~l~~~ 251 (438)
+ ..|+...-.++-|..++..
T Consensus 588 ~-~sp~~~AL~YDELA~~i~~ 607 (1323)
T 3s4w_B 588 E-HSPWASSLYYDEFANLIQE 607 (1323)
T ss_dssp S-SSHHHHHHHHHHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHHHHHhc
Confidence 3 4566777777777777754
No 176
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=40.44 E-value=1.3e+02 Score=23.50 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=54.1
Q ss_pred hhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHcccchhhHHhH--HHHHHH-HHHhhCC---CCHHHHHHHHHHHHHHHh
Q 013663 178 INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQG-LFLLSND---PSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 178 ~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~ll~~-l~~~~~~---~~~~~~~~a~~~l~~l~~ 250 (438)
-...+..+.+-++. .++.+...|+..+-.++......|...+ ..+++- +..++.. ....|+..+++.+.....
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 35566777777774 5777888899999999988876665444 355653 5555542 235799999999998887
Q ss_pred hCcc
Q 013663 251 VRPS 254 (438)
Q Consensus 251 ~~~~ 254 (438)
.++.
T Consensus 131 ~F~~ 134 (152)
T 3rru_A 131 GFPG 134 (152)
T ss_dssp CCSS
T ss_pred HhCC
Confidence 6543
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=39.70 E-value=89 Score=28.81 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhc--c-CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHH
Q 013663 64 SVEIRQAAGLLLKNNLRTAYK--S-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTC 139 (438)
Q Consensus 64 ~~~~R~~A~~~Lk~~i~~~w~--~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~-~w~~ll~~l~~~ 139 (438)
+......+...||..+++.+- . +..+ .....+..++..+.+.+|..+..+++.++....+. ....++..+...
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~---~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~ 209 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETE---EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 209 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCS---SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcCh---HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHH
Confidence 456777778888887754321 0 1100 11235556677788999999999999998765433 366677666543
No 178
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=38.20 E-value=1.3e+02 Score=23.00 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=58.3
Q ss_pred HhhhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhccccccccCCCCCC
Q 013663 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (438)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (438)
..|+.|++....|......++... ..-+++...+.+.+... ++..|...++.+..++......-.++ +
T Consensus 10 ~kL~~L~~sq~sIq~~s~W~l~h~------~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~----f 79 (142)
T 2km4_A 10 TKLNTLEDSQESISSASKWLLLQY------RDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQ----F 79 (142)
T ss_dssp HHHHTCCSCHHHHHHHHHHHHTCG------GGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCH----H
T ss_pred HHHHhccccHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchH----H
Confidence 344556666666666666665321 23356777777777764 56788888888888887654310010 0
Q ss_pred cchhhhHHHHHHH-hccCCCHHHHHHHHHHHHHHHc
Q 013663 175 ECPINIFLPRLLQ-FFQSPHTSLRKLSLGSVNQFIM 209 (438)
Q Consensus 175 ~~~~~~il~~l~~-~l~~~~~~vr~~al~~l~~~~~ 209 (438)
.......++..+. .....+++++....+++.-|-+
T Consensus 80 ~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWee 115 (142)
T 2km4_A 80 QDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKE 115 (142)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Confidence 0112222332222 2222477888888888877643
No 179
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=36.83 E-value=2.2e+02 Score=25.13 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcc-CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHH
Q 013663 63 KSVEIRQAAGLLLKNNLRTAYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI----AGWLELLQALV 137 (438)
Q Consensus 63 ~~~~~R~~A~~~Lk~~i~~~w~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~----~~w~~ll~~l~ 137 (438)
..+..+.+++.++-|.+.+.+.. +=-..+..+.+.+...+.+++..+|.+++.++-+++..... +.-..++..+.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 34566778888887777653210 00012333444444444556889999999998888865311 11122444444
Q ss_pred HHhcc-CChhhHhHHHHHHHHHHh
Q 013663 138 TCLDS-NDINHMEGAMDALSKICE 160 (438)
Q Consensus 138 ~~l~~-~~~~~r~~al~~l~~l~~ 160 (438)
+.+.. .+.+....++.+|+.++.
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCHHHHHHHHHHHHHHHh
Confidence 44432 356677777777777774
No 180
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.11 E-value=2.1e+02 Score=26.01 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
....+|...++.+.. +.|...++++.. .|.++..+...-. .....-|.+++.+|..... ..++.++..
T Consensus 56 ~~~~ii~EYf~~~d~---~Ea~~~l~eL~~p~~~~~~v~~~I~~aL---dr~~~erE~~s~LLs~L~~---~~ls~~~i~ 126 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDT---NEVAEMLRDLNLGEMKSGVPVLAVSLAL---EGKASHREMTSKLLSDLCG---TVMSTNDVE 126 (358)
T ss_dssp HHHHHHHHHHHHCCH---HHHHHHHHTTTCCGGGGGHHHHHHHHHT---TSCHHHHHHHHHHHHTTTT---TSCCHHHHH
T ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHhCCchhHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 444555555554433 556666666542 3444443333322 5678889999999887763 457777666
Q ss_pred HHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHhh
Q 013663 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG 124 (438)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~~ 124 (438)
.-...+++.+.+ ..|.+...+|..+|..+..+
T Consensus 127 ~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~ 161 (358)
T 3eiq_C 127 KSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 161 (358)
T ss_dssp HHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhC
Confidence 555667777654 36777888888888877654
No 181
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=34.64 E-value=1.1e+02 Score=25.91 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhc--c-CCHhhHHHHHHHhhhhhhcCcHHHHHHHHHHHHHHHHhhccCc-hHHHHHHHHH
Q 013663 64 SVEIRQAAGLLLKNNLRTAYK--S-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVT 138 (438)
Q Consensus 64 ~~~~R~~A~~~Lk~~i~~~w~--~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~la~i~~~~~~~~-w~~ll~~l~~ 138 (438)
+....+.+...||..+++.+. . +..+ .....+..+|..+.+.+|..+..+++.++....++. ...++..+-.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~---~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~ 142 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETE---EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 142 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSS---SHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCc---HHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 356667777788877654321 0 1100 112455566667889999999999998886644445 6666666554
No 182
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=31.57 E-value=1.6e+02 Score=22.05 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHH-HHhhcCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHHH
Q 013663 15 NEICRLLEQQISPSSTADKSQIWQQL-QQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (438)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L-~~~~~~p~~~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~~ 93 (438)
+.+.+.|+.+.+. .+ -...+..++ .+.......+..+..-+.. .+++ +.++...|-+-|-++-.+-.++....
T Consensus 7 ~~l~~~L~~L~~s-~~-sI~~~s~w~l~~~~~a~~iv~~i~~~l~~---~~~~-~KL~~LYLindIl~ns~~~~~~y~~~ 80 (135)
T 4fu3_A 7 SALEKKLSELSNS-QQ-SVQTLSLWLIHHRKHAGPIVSVWHRELRK---AKSN-RKLTFLYLANDVIQNSKRKGPEFTRE 80 (135)
T ss_dssp HHHHHHHHHCCSS-TT-HHHHHHHHHHHTGGGHHHHHHHHHHHHHH---SCTT-THHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHHHHHcccc-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccc-hhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4567777776533 33 344444444 4433333455555566653 2333 45677777676654433333344444
Q ss_pred HHHHhhhhh
Q 013663 94 IKSELLPCL 102 (438)
Q Consensus 94 i~~~ll~~l 102 (438)
+...|...+
T Consensus 81 f~~~l~~~~ 89 (135)
T 4fu3_A 81 FESVLVDAF 89 (135)
T ss_dssp HHTTHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 183
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=30.93 E-value=1.8e+02 Score=22.36 Aligned_cols=79 Identities=5% Similarity=0.066 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHhccCChhhHhHHHHHHHHHHhccccccccCCCCCCcchh-hhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013663 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI-NIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (438)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (438)
.-..+...+.+.+....+..+-.+|+++..|++......... .+.+.... ..+.+.|...+. ..+..|....+.+.-
T Consensus 39 ~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~-~~~f~~~F~~~L~~~f~~~~~-~~~~~r~kl~rLl~i 116 (145)
T 3d9j_A 39 FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQE-KDVFAPRFSNNIISTFQNLYR-CPGDDKSKIVRVLNL 116 (145)
T ss_dssp GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTT-TCSHHHHHHHHHHHHHHHHTS-SCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCc-cccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 346777777777777788999999999999999887632100 00111111 222222323333 347888777777766
Q ss_pred HH
Q 013663 207 FI 208 (438)
Q Consensus 207 ~~ 208 (438)
|-
T Consensus 117 W~ 118 (145)
T 3d9j_A 117 WQ 118 (145)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 184
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=30.21 E-value=2.9e+02 Score=24.40 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcc-CChhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (438)
Q Consensus 130 ~~ll~~l~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (438)
..++..+...+.+ ..+..+..+++++..++..-... .++......+++.+...+.+++..+|.++...+.++.
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~------~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlA 219 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ------KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYS 219 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH------HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH------HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 4555555555543 23444545555554444332211 0111234667777777777788999999998888876
Q ss_pred cccch--hhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHh
Q 013663 209 MLMPS--ALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIE 250 (438)
Q Consensus 209 ~~~~~--~~~~~~~~ll~~l~~~~~-~~~~~~~~~a~~~l~~l~~ 250 (438)
-+.-+ .+ +....++..+..+++ ..+++....++-+++.++.
T Consensus 220 v~~~~~~~~-~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 220 VCFHKDHNI-EGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHSCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCCc-hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 55321 11 112234444444443 3456677777777777774
No 185
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=28.34 E-value=18 Score=22.21 Aligned_cols=42 Identities=14% Similarity=-0.075 Sum_probs=29.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 013663 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ 45 (438)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~ 45 (438)
.|++-+.+.+-.|+.+.|..+..+|.+.+++-=+..++.+.+
T Consensus 3 ~~a~~~~~Ltk~Ql~qaLihLIqnD~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 3 HMADLSIILSKSQLQDTLIHLIKNDSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTC-
T ss_pred CcCCCcCccCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 455555666777888888888878877667777777776654
No 186
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=28.03 E-value=3.5e+02 Score=24.73 Aligned_cols=60 Identities=5% Similarity=0.007 Sum_probs=41.4
Q ss_pred hhhHhHHHHHHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHccc
Q 013663 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (438)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (438)
......++.||..+...-... . .++ ..+..+..+..++..+.+.+|..|++.|..++.+-
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~-~----~vl--~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGI-K----TML--ETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHH-H----HHH--TCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcchhhH-H----HHH--cChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 355667788888776543321 0 000 12446778888999999999999999998887765
No 187
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.17 E-value=3.5e+02 Score=24.13 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCcHHHHHH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhccCCHhhHH
Q 013663 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLA-FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (438)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~p~~~~~l~-~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~~l~~~~~~ 92 (438)
.+.+..+|...++...- +.|...++++.. |.+...+. .++...-..+...|...+.+|....... .++.++..
T Consensus 11 ~k~~~~ll~Ey~~~~d~---~Ea~~ci~el~~-p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~--~is~~~~~ 84 (339)
T 1ug3_A 11 EKKSKAIIEEYLHLNDM---KEAVQCVQELAS-PSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAG--HLSTAQYY 84 (339)
T ss_dssp HHHHHHHHHHHHHHCCH---HHHHHHHHTTCC-GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT--SSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCH---HHHHHHHHHcCC-cccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC--CCCHHHHH
Confidence 34566667766666543 678888888864 33332222 2222111345688999999999887653 57887776
Q ss_pred HHHHHhhhhhhc---CcHHHHHHHHHHHHHHHHh
Q 013663 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (438)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~a~~la~i~~~ 123 (438)
.-...+++.+.+ .-|..+..++..++.....
T Consensus 85 ~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~ 118 (339)
T 1ug3_A 85 QGLYEILELAEDMEIDIPHVWLYLAELVTPILQE 118 (339)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGST
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHC
Confidence 666677777764 4688888888888876644
No 188
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=26.00 E-value=2.5e+02 Score=22.44 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCC---hhhHhHHHHHHHHHHhccccccc
Q 013663 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND---INHMEGAMDALSKICEDIPQVLD 167 (438)
Q Consensus 105 ~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~---~~~r~~al~~l~~l~~~~~~~~~ 167 (438)
....+.+.+|.-+|.|........-|.++..|...+.+.+ .+.|..-..++..+...+|.-++
T Consensus 80 ~qEeiir~IA~qLAqiGD~md~sI~P~lV~~La~qf~N~~lsEEdrr~~LAaaleql~Qt~P~Dme 145 (197)
T 2bid_A 80 SQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDME 145 (197)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHCCCcHh
Confidence 3566667778888888865432344566666666665542 45566666788888888887554
No 189
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=25.32 E-value=1.2e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhc-cCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhcccc
Q 013663 114 GTIVSVVVQLGG-IAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 114 a~~la~i~~~~~-~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~ 164 (438)
...++.|+...+ ...+++++..|...+.+. ++.+..-||.+|.+++.+=++
T Consensus 23 ~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse 76 (144)
T 1eyh_A 23 SSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSE 76 (144)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCH
Confidence 345666666543 356789999999999874 678888999999999887554
No 190
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=24.89 E-value=1.4e+02 Score=29.34 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhhc--CCcH-HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhc
Q 013663 10 QEQGFNEICRLLEQQ--ISPSSTADKSQIWQQLQQYSQ--FPDF-NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (438)
Q Consensus 10 ~~~~~~~l~~~l~~~--~s~d~~~~r~~A~~~L~~~~~--~p~~-~~~l~~il~~~~~~~~~~R~~A~~~Lk~~i~~~w~ 84 (438)
+......+.|.+..+ ++|+.. .|+.|...+..+-. .++. +..+..++.+ ...+.++-++...+|+.|...|+
T Consensus 359 d~~~~~~~~q~L~~v~~~~P~~~-lR~~a~~vl~~~I~~~~~e~R~~iL~~LL~~--~~~~~v~~~lI~~~KdeI~~al~ 435 (596)
T 4f52_E 359 EIKSFLTVPQGLVKVMTLCPIET-LRKKSLAMLQLYINKLDSQGKYTLFRCLLNT--SNHSGVEAFIIQNIKNQIDMSLK 435 (596)
T ss_dssp GSHHHHHHHHHHHHHHHHCSCHH-HHHHHHHHHHHHHHHBCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHTCC
T ss_pred chhhHHHHHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHh
Q ss_pred c
Q 013663 85 S 85 (438)
Q Consensus 85 ~ 85 (438)
+
T Consensus 436 ~ 436 (596)
T 4f52_E 436 R 436 (596)
T ss_dssp C
T ss_pred c
No 191
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=24.54 E-value=2.3e+02 Score=21.53 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=55.8
Q ss_pred hhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccc
Q 013663 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (438)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 256 (438)
.+..++|.++..++|.+..+....+..|..+ ++.+.++ +...+..+|.. ..+.++..++...+...
T Consensus 28 ~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~~~l~p~-------I~~vl~s~D~~---W~ywil~~lv~~~~~~~ 93 (134)
T 3ut4_A 28 EIEPIIFDLLKWLQDYNWPIAKDILPVVVLH----QSIAMPH-------ILTILQGNDIM---WKYWVIKLMIPYLIYPN 93 (134)
T ss_dssp HHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT----HHHHHHH-------HHHHHHSSCHH---HHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHc----cHhhHHH-------HHHHHHcCChH---HHHHHHHHHHHcCCHHH
Confidence 5788999999999999999987777777653 2223333 22223344432 33445555554444321
Q ss_pred cccHHHHHHHHhhhh----c-CCChHHHhHHHHHHHHhh
Q 013663 257 EPHLRNLFEYMLQVN----K-DTDDDVALEACEFWHSYF 290 (438)
Q Consensus 257 ~~~~~~li~~~~~~~----~-~~~~~v~~~a~~~~~~~~ 290 (438)
...+.+-+.+.+ + +..+++...|-+++..+.
T Consensus 94 ---~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~ 129 (134)
T 3ut4_A 94 ---KQLVKSELERLSSLEIINEDIREIVNLSKDYLHFYY 129 (134)
T ss_dssp ---HHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHc
Confidence 223333333333 2 246778888887777653
No 192
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=23.95 E-value=3.1e+02 Score=23.02 Aligned_cols=73 Identities=11% Similarity=0.026 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCChhhHhHHHH----HHHHHHhccccccccCCCCCCcchhhhHHHHHHHhccCCCHHHHHHHHHHHH
Q 013663 130 LELLQALVTCLDSNDINHMEGAMD----ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (438)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~al~----~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (438)
+...+.+..++.|++.-.|..|+. ++.. .....++ +...+.++..+...+.+++..|+.+.-.+|.
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~-------~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr 176 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFS-------ESKISDMLEMVKDTIHHSPERTKSAMNNFLN 176 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSC-------HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcC-------hhhHHHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 345667778888988888888877 4443 1211111 1356778888888999999999999888887
Q ss_pred HHHcccc
Q 013663 206 QFIMLMP 212 (438)
Q Consensus 206 ~~~~~~~ 212 (438)
.+....|
T Consensus 177 ~~gk~~~ 183 (235)
T 1t06_A 177 TVAISYV 183 (235)
T ss_dssp HHHHHCG
T ss_pred HHHhhCH
Confidence 7765544
No 193
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=23.80 E-value=4.3e+02 Score=24.30 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=36.4
Q ss_pred hccCCHhhHHHHHHHhhhhhh---cCcHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHhc
Q 013663 83 YKSMSPSNQQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLD 141 (438)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~---~~~~~vr~~~a~~la~i~~~~-~~~~w~~ll~~l~~~l~ 141 (438)
..+-++.+++.++..+-...+ .-.+.+|+++..++..+.-.. ..+.-.+++..+-..++
T Consensus 183 fdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 183 FDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 344577788888877655544 346778888888877776332 33445566665544443
No 194
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=22.39 E-value=2.8e+02 Score=22.20 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhh
Q 013663 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ 269 (438)
Q Consensus 235 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~ 269 (438)
......++.++-.++......+.+.++.++..+..
T Consensus 83 ~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd 117 (177)
T 2ful_A 83 PEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYN 117 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhc
Confidence 44556667777776643333444555555555543
No 195
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=22.20 E-value=1.5e+02 Score=23.08 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=38.1
Q ss_pred HHHHHHHHhhc-cCchHHHHHHHHHHhccC--ChhhHhHHHHHHHHHHhcccc
Q 013663 115 TIVSVVVQLGG-IAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQ 164 (438)
Q Consensus 115 ~~la~i~~~~~-~~~w~~ll~~l~~~l~~~--~~~~r~~al~~l~~l~~~~~~ 164 (438)
..++.|+...+ ...+++++..|...+.+. ++.+..-||.+|.+++.+=++
T Consensus 42 ~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse 94 (148)
T 1inz_A 42 SLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSE 94 (148)
T ss_dssp CHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCH
Confidence 34556665542 356789999999999874 688999999999999887554
No 196
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=22.09 E-value=3.4e+02 Score=22.43 Aligned_cols=89 Identities=8% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhCcccccccHHHHHHHHhhhhcCCChHHHhHHHHHHHHhhccCCChhhHHhhH
Q 013663 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303 (438)
Q Consensus 224 ~~l~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l 303 (438)
+.+..++.+ +......++.++-.++......+.+.++.++..+... +=+-..++--|..=....-..+....-+
T Consensus 67 ~lL~~~~~~-~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~-----DIleEEaIl~W~~~~s~~~~~~e~~k~v 140 (208)
T 2iu1_A 67 RHFLRFCHN-NKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDA-----DLLEEEVIISWSEKASKKYVSKELAKEI 140 (208)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHT-----TSSCHHHHHHHHHSCCCSSSCHHHHHHH
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc-----chhhhHHHHHHHhcCCcccccHHHHHHH
Confidence 334444432 3344455566665554333323344455555554432 1222345555654322110111122122
Q ss_pred HHHHHHHHhccCcCh
Q 013663 304 PRLVPVLLSNMIYAD 318 (438)
Q Consensus 304 ~~l~~~l~~~l~~~~ 318 (438)
..-+..++.||...+
T Consensus 141 ~~~~~pFI~WL~EAE 155 (208)
T 2iu1_A 141 RVKAEPFIKWLKEAE 155 (208)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHccc
Confidence 333456778887554
No 197
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.02 E-value=2.7e+02 Score=23.81 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh-cc---CCHhhHHHHHHHhhhhhhc----CcHHHHHHHHHHHHHHHHhhcc-CchHHH
Q 013663 62 GKSVEIRQAAGLLLKNNLRTAY-KS---MSPSNQQYIKSELLPCLGA----ADRHIRSTVGTIVSVVVQLGGI-AGWLEL 132 (438)
Q Consensus 62 ~~~~~~R~~A~~~Lk~~i~~~w-~~---l~~~~~~~i~~~ll~~l~~----~~~~vr~~~a~~la~i~~~~~~-~~w~~l 132 (438)
+.++..+.++..++-|.+.+.. .. .+......+...+...+.+ ++..+|-++|..+-+++..... ..-.++
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4467888899988888887643 21 1222233333333333332 3677888888888888765311 111344
Q ss_pred HHHHHHHhcc---------CChhhHhHHHHHHHHHHh
Q 013663 133 LQALVTCLDS---------NDINHMEGAMDALSKICE 160 (438)
Q Consensus 133 l~~l~~~l~~---------~~~~~r~~al~~l~~l~~ 160 (438)
...+.+.+.. .+++...+++.+++.++.
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 5555554442 256788888999998885
No 198
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.35 E-value=91 Score=23.56 Aligned_cols=58 Identities=7% Similarity=-0.013 Sum_probs=39.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhccCChhhHhHHHHHHHHHHhcc
Q 013663 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (438)
Q Consensus 99 l~~l~~~~~~vr~~~a~~la~i~~~~~~~~w~~ll~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (438)
|+.|++....|......++-.. ..-.++...+.+.+....+..|...++++..|+...
T Consensus 13 L~~L~~s~~sI~~~s~w~l~~~------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 13 LSELSNSQQSVQTLSLWLIHHR------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHHCCSSTTHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4555666677777766666532 123566777777777767788999999999997655
Done!