Query 013664
Match_columns 438
No_of_seqs 182 out of 332
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02768 AMP deaminase 100.0 8E-133 2E-137 1074.8 37.6 423 1-431 156-587 (835)
2 PLN03055 AMP deaminase; Provis 100.0 3E-117 6E-122 938.6 35.4 345 79-430 2-353 (602)
3 KOG1096 Adenosine monophosphat 100.0 2E-117 4E-122 933.7 29.1 364 66-435 124-528 (768)
4 TIGR01429 AMP_deaminase AMP de 100.0 8E-112 2E-116 899.0 33.2 342 83-430 1-374 (611)
5 PTZ00310 AMP deaminase; Provis 100.0 6E-107 1E-111 910.4 32.9 357 65-435 687-1054(1453)
6 cd01319 AMPD AMP deaminase (AM 100.0 8E-101 2E-105 802.4 23.6 256 169-430 1-263 (496)
7 PTZ00310 AMP deaminase; Provis 100.0 7.9E-94 1.7E-98 804.4 32.3 339 66-430 61-416 (1453)
8 COG1816 Add Adenosine deaminas 98.5 1.2E-08 2.6E-13 104.5 -2.3 132 284-422 2-133 (345)
9 cd00443 ADA_AMPD Adenosine/AMP 98.2 7.8E-07 1.7E-11 88.7 2.8 101 227-391 2-112 (305)
10 PF00962 A_deaminase: Adenosin 96.9 9.9E-05 2.1E-09 73.4 -2.9 128 225-391 1-144 (331)
11 cd01321 ADGF Adenosine deamina 85.8 4.6 0.0001 41.7 9.3 62 330-392 66-140 (345)
12 cd01320 ADA Adenosine deaminas 72.3 3.4 7.3E-05 41.2 3.2 53 225-277 1-58 (325)
13 TIGR01430 aden_deam adenosine 66.8 3.8 8.3E-05 41.0 2.3 25 227-251 2-26 (324)
14 PTZ00124 adenosine deaminase; 65.4 20 0.00043 37.6 7.2 128 226-391 35-173 (362)
15 PF01726 LexA_DNA_bind: LexA D 61.1 7.1 0.00015 31.2 2.4 31 241-280 8-38 (65)
16 PF05871 ESCRT-II: ESCRT-II co 57.8 21 0.00046 32.7 5.2 50 327-378 57-113 (139)
17 PRK09358 adenosine deaminase; 50.3 10 0.00022 38.3 2.1 28 224-251 8-35 (340)
18 KOG4741 Uncharacterized conser 34.9 28 0.00062 33.1 2.2 62 262-327 86-147 (173)
19 KOG1097 Adenine deaminase/aden 34.3 1.7E+02 0.0037 31.5 8.1 99 327-436 114-235 (399)
20 COG1908 FrhD Coenzyme F420-red 33.4 70 0.0015 29.3 4.4 41 326-373 69-115 (132)
21 KOG4068 Uncharacterized conser 32.1 86 0.0019 30.0 4.9 47 330-378 65-118 (174)
22 PF07521 RMMBL: RNA-metabolisi 30.8 65 0.0014 23.5 3.1 26 233-261 12-37 (43)
23 PRK10219 DNA-binding transcrip 28.5 59 0.0013 27.2 3.0 68 239-346 1-69 (107)
24 cd08588 PI-PLCc_At5g67130_like 27.4 91 0.002 31.3 4.6 52 231-282 63-124 (270)
25 PF07304 SRA1: Steroid recepto 25.2 1.5E+02 0.0034 27.5 5.4 37 165-201 43-82 (157)
26 COG4565 CitB Response regulato 25.1 1.2E+02 0.0027 30.2 4.9 93 171-291 84-181 (224)
27 PF08821 CGGC: CGGC domain; I 23.8 35 0.00076 29.9 0.8 21 232-252 68-98 (107)
28 PRK13361 molybdenum cofactor b 23.5 4.6E+02 0.01 26.6 8.9 113 241-389 75-193 (329)
29 cd01784 rasfadin_RA Ubiquitin- 21.6 67 0.0015 27.7 2.0 30 231-260 15-46 (87)
No 1
>PLN02768 AMP deaminase
Probab=100.00 E-value=7.7e-133 Score=1074.83 Aligned_cols=423 Identities=86% Similarity=1.291 Sum_probs=407.6
Q ss_pred CCCCCCCcceeeccCCCCCCCCCCccccchhh--hhhhhhhhhccCCCCCCCCCCCCcchhhhccCcccCCcceeeeCCC
Q 013664 1 MTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPK 78 (438)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~mirS~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~rv~i~~~ 78 (438)
++++.+.|++|+++||+.+ .++++..||++ +.+..||||++++|++|++++||+++||+|++|++.+||||.|+|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (835)
T PLN02768 156 LTDNEKLDTTYLHTNGNVE--LPDHADANGEQIPIPASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNITPL 233 (835)
T ss_pred cCCcccccchhhccCCCCC--CccccccCcccccccchhceeccccCCccccCCCCchHHHHhhcCchhhhhhccccccC
Confidence 3567889999999999999 59999999999 8899999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeCcEEEEecCCCCCc
Q 013664 79 EVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKE 158 (438)
Q Consensus 79 ~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~GV~~v~~~~~~~~ 158 (438)
++|.+|+++|++.|.+||.||+||+|....++|+.....++++|+|.+|||.+.+++++++.|+|+|||++||.+.+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~r~ky~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~v~~~~~~~~ 313 (835)
T PLN02768 234 EVPSPDEVEAYKVLQECLELRKRYVFREEVAPWEKEIISDPSTPKPNPNPFSYTPEGKSDHYFEMQDGVVHVYANKDSKE 313 (835)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHccCCCCCCccccccCCCCCCCCCCCCcccCCCCCCCeEEEecCCEEEEeeCCCCCc
Confidence 99999999999999999999999999888899988777778888999999999888999999999999999998887777
Q ss_pred cccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeeccccccccc
Q 013664 159 ELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSAC 238 (438)
Q Consensus 159 ~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~Sac 238 (438)
..+|+|||++|+.|++.|++++++||++|||++||+|||+||+||++||+++|..++|++||||||||||||||||||||
T Consensus 314 ~~~p~~~~~~F~~D~~~l~~~i~dg~~ksfc~~RL~~Le~Kf~Lh~lLN~~~E~~~~K~~phrDFYnvrKVDthvh~sac 393 (835)
T PLN02768 314 ELFPVADATTFFTDLHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSAC 393 (835)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhccCCCCCceeeeEeeccchhhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHH
Q 013664 239 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 318 (438)
Q Consensus 239 Mnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~ 318 (438)
|||||||||||+|++++||+||+.++|+.+||+|||+++++++|+||||+|||||+++||||||+||+||||+|+++||+
T Consensus 394 Mnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDkFn~kynP~G~s~LRe 473 (835)
T PLN02768 394 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 473 (835)
T ss_pred CCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccccccccCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhcccc
Q 013664 319 IFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHH 398 (438)
Q Consensus 319 iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~ 398 (438)
|||||||+|+|||||||||+||+++|++|||+||+||||||++++||++||+|+++|||+|+||||+|||||+|.+
T Consensus 474 iFLktDN~i~GrYfAELiK~V~~dlE~sKyQ~aE~RlsIYGr~~~EW~kLA~W~v~~~l~S~nvRWlIQIPRlY~i---- 549 (835)
T PLN02768 474 IFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNV---- 549 (835)
T ss_pred HHcCcCCCCChhhHHHHHHHHHHHHHhccceeeEEEEEecCCCHHHHHHHHHHHHHcCCCCCCceEEEEcccchhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccccccccccHHHHhhhccccccc-------cCchhHHHH
Q 013664 399 RCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCA 431 (438)
Q Consensus 399 ~~~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~~ 431 (438)
+++.|+++||||||+ |||+||| +||.||.|-
T Consensus 550 -~k~~g~v~nFqd~L~-NIF~PLFeATl~P~~hp~L~~FL 587 (835)
T PLN02768 550 -YKEMGIVTSFQNILD-NIFIPLFEVTVDPDSHPQLHVFL 587 (835)
T ss_pred -hhcCCccCCHHHHHH-HHHHHHHHHhcCCccCHHHHHHH
Confidence 558899999999995 9999999 778888763
No 2
>PLN03055 AMP deaminase; Provisional
Probab=100.00 E-value=2.9e-117 Score=938.58 Aligned_cols=345 Identities=77% Similarity=1.214 Sum_probs=331.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeCcEEEEecCCCCCc
Q 013664 79 EVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKE 158 (438)
Q Consensus 79 ~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~GV~~v~~~~~~~~ 158 (438)
+.|..|.+++++.|++||.||++|+|.+..++| ++...++++|.|.+|||.+.+++++++.|+|+||||+||.+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~v~~~~~~~~ 80 (602)
T PLN03055 2 DAPSDEEEEVCAMMQECLELRDKYLFREKLPPW-RKGIFESSTSKPNPDPFRYEPEPPSQHVFRMVDGVMHVYAPDDAKE 80 (602)
T ss_pred CCCChHHHHHHHHHHHHHHhhhhhcccCCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeCCEEEEecCCcCCC
Confidence 457889999999999999999999999999999 5555677788999999999999999999999999999998877777
Q ss_pred cccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeeccccccccc
Q 013664 159 ELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSAC 238 (438)
Q Consensus 159 ~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~Sac 238 (438)
..+|+||+++|+.|++.|+++|++||++|||++||+|||+||+||++||+++|..++|++||||||||||||||||||||
T Consensus 81 ~~~~~p~~~~f~~D~~~l~~~~~~g~~~s~~~~RL~~Le~kf~L~~~lN~~~E~~~~k~~p~rDFyn~rKVDthvh~s~c 160 (602)
T PLN03055 81 ELFPVPDATTFFTDMHRILRIVSLGNVRTFCHHRLKLLEQKFSLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSSC 160 (602)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhccCCCCCceeeeEeecccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHH
Q 013664 239 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 318 (438)
Q Consensus 239 Mnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~ 318 (438)
|||||||||||+|++++||+||+.++|+.+||+|||+++|+++++||||+|||||+++||||||+||+||||+|+++||+
T Consensus 161 m~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evfe~l~~~~~dLtVd~Ldvha~~~~fhrfD~fn~kynp~g~s~Lr~ 240 (602)
T PLN03055 161 MNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGYDLNVDLLDVHADKNTFHRFDKFNLKYNPCGQSRLRE 240 (602)
T ss_pred CCHHHHHHHHHHHHHcCCCcEeecCCCcchhHHHHHHHcCCCcccCcccccCccCCCCcccccccccccCCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhcccc
Q 013664 319 IFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHH 398 (438)
Q Consensus 319 iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~ 398 (438)
|||||||+|+|||||||||+||+++|++|||+||+||||||++++||++||+|+++|||+|+||||+|||||+|.+
T Consensus 241 iFLktdN~i~G~YlAel~k~v~~~le~skyQ~~E~rlsiYG~~~~EW~kLA~W~~~~~l~s~n~rW~IqiPRly~~---- 316 (602)
T PLN03055 241 IFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNRLYSENVVWLIQLPRLYNV---- 316 (602)
T ss_pred HHcCcCCCcchhhHHHHHHHHHHHHHhccceeEEEEEEEeCCCHHHHHHHHHHHHHcCcCCCCceEEEecCcchhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccccccccccHHHHhhhccccccc-------cCchhHHH
Q 013664 399 RCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVC 430 (438)
Q Consensus 399 ~~~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~ 430 (438)
+++.|.++||||||+ |||.||| +||.||.|
T Consensus 317 -~~~~g~v~~Fqd~L~-NIF~PLFeatl~P~~hp~L~~f 353 (602)
T PLN03055 317 -YKEMGIVQSFQQILD-NIFKPLFEVTVDPSSHPQLHVF 353 (602)
T ss_pred -hhcCCCcCCHHHHHH-HHHHHHHHHHcCcccCHHHHHH
Confidence 557899999999995 9999999 67778876
No 3
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-117 Score=933.66 Aligned_cols=364 Identities=53% Similarity=0.830 Sum_probs=327.6
Q ss_pred ccCCcceeeeCC---CCCCChhHHHHHHHHHHHHHHhhccCCCCCCCccccc--------------c---cCCCC--CC-
Q 013664 66 EQETFARLQITP---KEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKE--------------M---ISDPS--TP- 122 (438)
Q Consensus 66 ~~~~f~rv~i~~---~~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~--------------~---~~~~~--~~- 122 (438)
....|+|+.|+| +++|.+|+..+++.+.+|+.+|+|||..+....++.. . ..++. +|
T Consensus 124 ~~~~~~~~~~~g~~~~~~~tedl~~~~k~l~~~l~~r~ky~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~ 203 (768)
T KOG1096|consen 124 MGVRFQRVAITGEELEGVPTEDLADASKSLAKALFLREKYMRISLQRFPDTTRNYLSGLAYPLPKYYYNESYDTKSHPPG 203 (768)
T ss_pred hccchheeeccCcccCCCCHHHHHHHHhhhHHHHHHHHHHhhhhhhcCCcccccccCCCCCCCcccCcccccccccCCcc
Confidence 457899999998 5689999999999999999999999964322211110 0 00111 11
Q ss_pred -----CCCCCCCccC-CCCCCCceEEeeCcEEEEecCCC----CCccccCCCChHHHHHHHHHHHHHHhcCchhhHHHHH
Q 013664 123 -----KPNPDPFYYA-PVGKSDHHFEMQDGVIHVYPNKD----SKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHR 192 (438)
Q Consensus 123 -----~~~~dp~~~~-~~~~~~~~~~~~~GV~~v~~~~~----~~~~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~R 192 (438)
.+..+|+... ++++.++.++|.+||..|+.+++ ..+..+|+||+++|+.|+++|+++|++||+|+||+||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~l~m~~~v~~v~~~~~~~~~~~~~~~~iPt~~ef~~D~~~ll~lI~dgp~ksf~~RR 283 (768)
T KOG1096|consen 204 KGNPPGEYFEPFDPEDPGEKLDYHLRMQDGVVHVYYDGKEDSHAEEVLLPIPTLQEFRDDFEKLLALIADGPLKSFCHRR 283 (768)
T ss_pred cCCCCccccccccccccCcccceEEEecCCeeEeecCCchhhhccCcCCCCCcHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 1112355443 45777899999999999997765 3466889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHH
Q 013664 193 LLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKE 272 (438)
Q Consensus 193 L~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~e 272 (438)
|+|||+||+||++||+++|..++|++|||||||||||||||||||||||||||||||+|+++|||+||+.++|+.+||+|
T Consensus 284 LqyLe~KF~l~~~LNe~~El~~~K~vPHRDFYNvRKVDthih~SaCmnQkhLlrFIk~klr~epdrvV~~~~g~~lTLre 363 (768)
T KOG1096|consen 284 LQYLESKFQLHQLLNEKKELLAQKKVPHRDFYNVRKVDTHIHASACMNQKHLLRFIKKKLRKEPDRVVIQRDGRKLTLRE 363 (768)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCCcccccccchhcchhhHhhhcCHHHHHHHHHHHhhcCCceEEEecCCceeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeE
Q 013664 273 VFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAE 352 (438)
Q Consensus 273 vFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE 352 (438)
||+++|+++|||+||+|||||+++||||||+||+||||.|+++||+|||||||||+|+|||||+|+|+.+||+||||+||
T Consensus 364 vF~~l~L~~yDlsvd~ldvha~~~tfHrfdkfn~Kynp~g~s~LR~iFLktDNyI~GeYlAei~Kev~~dleeSKYQ~ae 443 (768)
T KOG1096|consen 364 VFKSLGLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPVGESRLREIFLKTDNYINGEYLAEILKEVLSDLEESKYQLAE 443 (768)
T ss_pred HHHHcCCceeccchhHHHhhhchhhhhccchhhhhcCCccHHHHHHHHHhhccccchhhHHHHHHHHHhhHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhccccccccccccccHHHHhhhccccccc-------cCc
Q 013664 353 YRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHL 425 (438)
Q Consensus 353 ~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~~~~~~g~~~nf~~~l~~niF~Plf-------~~~ 425 (438)
+||||||++++||++||+|+++|+++|+|+||+|||||+|.+ ++..|+++|||+||+ |||.||| +||
T Consensus 444 ~rlsiygrs~~EW~klA~W~v~~~v~S~NvRWlIQipRiydv-----y~~~g~v~nFqe~L~-nIF~PLFeat~~p~~hp 517 (768)
T KOG1096|consen 444 PRLSIYGRSRDEWDKLASWLVDNKVFSPNVRWLIQIPRLYDV-----YRKKGIVKNFQEMLD-NIFLPLFEATKDPSSHP 517 (768)
T ss_pred eeEEEeeeCHHHHHHHHHHHHHccccCCCeeEEEecchHhHH-----HHhcCchhhHHHHHH-HHhhhhhhcccCCCcch
Confidence 999999999999999999999999999999999999999976 557899999999995 9999999 999
Q ss_pred hhHHHH-HHhh
Q 013664 426 YMHVCA-HVCA 435 (438)
Q Consensus 426 ~~~~~~-~~~~ 435 (438)
.||+|- +||.
T Consensus 518 ~Lh~FL~~V~g 528 (768)
T KOG1096|consen 518 ELHVFLQQVSG 528 (768)
T ss_pred HHHHHHHHhcC
Confidence 999984 4543
No 4
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=100.00 E-value=8.5e-112 Score=898.95 Aligned_cols=342 Identities=51% Similarity=0.808 Sum_probs=306.2
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCC------CCC---ccccc--------ccCCC-CCCCCCCCCCcc--C-CCCCCCceE
Q 013664 83 PDEMEAYVVLQECLEMRKRYLFRE------AVA---PWEKE--------MISDP-STPKPNPDPFYY--A-PVGKSDHHF 141 (438)
Q Consensus 83 ~d~~~a~~~l~~aL~lR~kY~~~~------~~~---~~~~~--------~~~~~-~~~~~~~dp~~~--~-~~~~~~~~~ 141 (438)
+|++++++.|.+||.+|+|||... ++. .|... ..... .+|.+.++|+.. . ++++.++.|
T Consensus 1 ~~~~~~~~~~~~~~~~r~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (611)
T TIGR01429 1 EDLAEAAKSLAKALMLREKYARLAYHRFPDTTAQYLSHQGYPESVPLEEGLPDFHPPPDPQEDPYCLDDDAPPIELGYLV 80 (611)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchhccCCCCCCCCCCccccccCcCCCCCCcCCCCcccCCCCCCCCCceE
Confidence 488999999999999999999432 111 12110 01111 122334667653 2 334788999
Q ss_pred EeeCcEEEEecCCCC----CccccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcC
Q 013664 142 EMQDGVIHVYPNKDS----KEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKS 217 (438)
Q Consensus 142 ~~~~GV~~v~~~~~~----~~~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~ 217 (438)
+|++|||+||.+++. .+...|+|||++|+.|++.|++++++||++|||++||+|||+||+||++||+.+|..++|+
T Consensus 81 ~~~~gv~~v~~~~~~~~~~~~~~~~~~~~~~f~~D~~~l~~~~~~g~~~s~~~~RL~~Le~kf~L~~llN~~~E~~~~k~ 160 (611)
T TIGR01429 81 RMHGGVLFVYDNDTMLERQEPHFLVPPTLKTYYVDMEHLLALISDGPTKSFCFRRLQYLESKFNLHELLNEMSELKEQKS 160 (611)
T ss_pred EecCCEEEEEcCcchhhcCCccccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcc
Confidence 999999999987654 2334566899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCc
Q 013664 218 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKST 297 (438)
Q Consensus 218 ~phRDFYNvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~t 297 (438)
+|||||||||||||||||||||||||||||||+|++++||+||+.++|+.+||+|||+++|+++|+||||+|||||++++
T Consensus 161 ~p~rDFyn~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evf~~l~l~~~dltvd~Ldv~a~~~~ 240 (611)
T TIGR01429 161 VPHRDFYNVRKVDTHIHAAASMNQKHLLRFIKHKLKTEPDETVIERDGKKLTLREVFDSLHLDPYDLSVDTLDVHADRNT 240 (611)
T ss_pred CCCCCceeeEEeeccccccccCCHHHHHHHHHHHHHcCCCcEEecCCCccccHHHHHHHcCCChhhCcHhhhCCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCC
Q 013664 298 FHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNEL 377 (438)
Q Consensus 298 fhrfD~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l 377 (438)
|||||+||+||||+|+++||+|||||||+|+|+|||||||+||+++|++|||+||+||||||++++||++||+|+++|||
T Consensus 241 fhrfd~fn~kynp~G~s~Lr~iFLktdN~i~G~YfAelik~v~~~le~skyQ~~E~rlsiyG~~~~EW~kLA~W~~~~~l 320 (611)
T TIGR01429 241 FHRFDKFNLKYNPVGESRLREIFLKTDNYIGGKYFAELVKEVFTDLEDSKYQYAEPRLSIYGRSPKEWDSLARWIIDHDV 320 (611)
T ss_pred cccccccccccCccchHHHHHHHhccCCCcchhhHHHHHHHHHHHHHhcCceeEEEEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecchhhhccccccccccccccHHHHhhhccccccc-------cCchhHHH
Q 013664 378 YSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVC 430 (438)
Q Consensus 378 ~S~n~rW~IQIPRl~~~~~~~~~~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~ 430 (438)
+|+||||+|||||+|.+ ++..|.++||||||+ |||.||| +||.||+|
T Consensus 321 ~s~n~rW~IqiPRly~v-----~k~~g~v~~Fq~~L~-NIF~PLFeat~~P~~~p~L~~f 374 (611)
T TIGR01429 321 FSPNVRWLIQVPRLYDV-----YRSKKLVPNFGDMLE-NVFLPLFEVTKDPSSHPELHLF 374 (611)
T ss_pred CCCCccEEEEcchhHHH-----HhcCCCcCCHHHHHH-HHHHHHHHHhcCCccCHHHHHH
Confidence 99999999999999975 457799999999995 9999999 67777765
No 5
>PTZ00310 AMP deaminase; Provisional
Probab=100.00 E-value=5.6e-107 Score=910.35 Aligned_cols=357 Identities=32% Similarity=0.531 Sum_probs=314.8
Q ss_pred cccCCcceeeeCCCCCCChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccC-CCCCCCceEEe
Q 013664 65 PEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYA-PVGKSDHHFEM 143 (438)
Q Consensus 65 ~~~~~f~rv~i~~~~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~-~~~~~~~~~~~ 143 (438)
+....|+|+.++|.+ ...+..+|++.|.+||.+|+||++.. ..+|+......+ ..+-+... ......|.|++
T Consensus 687 D~~~~fPR~I~~gp~-~~~~~~~~~~~l~~~~~lr~~y~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 759 (1453)
T PTZ00310 687 DQRVRFPRTVLYGPH-KSGKAVTAAPALARALDLRHKYIWNP-PPPWETTQRNVV-----EEDFQRTTRQFNEDQWTYAA 759 (1453)
T ss_pred cccccCceEEecCCc-ccchHHHHHHHHHHHHHHHHHhhcCC-CCcccccccccc-----ccccccccCCCCCCceeEec
Confidence 345689999888853 13458899999999999999999763 346654311110 01101111 11234567999
Q ss_pred eCcEEEEecCCCCCccccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhh--hhhcCCCCC
Q 013664 144 QDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEF--LAQKSAPHR 221 (438)
Q Consensus 144 ~~GV~~v~~~~~~~~~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~--~~~K~~phR 221 (438)
.|||+.|+..+........+||+++|+.|++.|++++++||+||||++||+|||+||+||++||+..|. .++|.+|||
T Consensus 760 ~dgv~~~~~~~~~~~~~~~~p~~~~f~~D~~~l~~~~~~~~~ksf~~~RL~~Le~kf~Lh~~lN~~~E~~~~~~k~~~~r 839 (1453)
T PTZ00310 760 YDGVFILSPKGAVHAWPRFLPTLTEFIRDLSELRDICSSVEVKRLATKRLENLEHKFRLHLALNHSNEAGTTEERESSNR 839 (1453)
T ss_pred cCcEEEEeeCCcccccccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHhhcCCCC
Confidence 999999997765333344589999999999999999999999999999999999999999999999996 699999999
Q ss_pred CcccceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccC
Q 013664 222 DFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRF 301 (438)
Q Consensus 222 DFYNvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrf 301 (438)
||||||||||||||||||||||||+|||+|++++||+||+.++|+.+||+|||+++|+++| ||||+||||||++|||||
T Consensus 840 DFYn~rKVDthih~sacm~qk~LL~FIk~kl~~~~d~vV~~~~g~~~TL~evF~~l~~t~~-lsvd~L~v~ad~~~f~rf 918 (1453)
T PTZ00310 840 DFYQAYKVDTHIHMAAGMTARQLLEFVVDKLLESGDDIAFKRGDHIVTLGQLFSKYGITPN-LTVDQLNVQADHTLFERF 918 (1453)
T ss_pred CceeeeeeccccchhccCCHHHHHHHHHHHHhcCCCcEEEcCCCccccHHHHHHHcCCCcc-cchhhhccccCcchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCC
Q 013664 302 DKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSEN 381 (438)
Q Consensus 302 D~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n 381 (438)
|+||+||||+|+++||+|||||||+|+|||||||||+||++||++|||+||+||||||++++||++||+|+++|||+|+|
T Consensus 919 D~fn~kynP~g~s~LreiFLktDN~i~G~YfAel~K~v~~~le~skyq~aE~RlSIYG~~~~EW~kLA~W~~~~~l~S~n 998 (1453)
T PTZ00310 919 DNFNSKYNPMENPDLRSLLLKTDNFMKGRYFAELIKDVFEQYSRDRFTYAENRLSIYGINVKEWDDLAHWFDTHGMASKH 998 (1453)
T ss_pred hcccccCCCcccHHHHHHHccCCCCcccHhHHHHHHHHHHHHHhccceeeeeeEeeeCCCHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecchhhhccccccccccccccHHHHhhhccccccc-------cCchhHHHH-HHhh
Q 013664 382 VVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCA-HVCA 435 (438)
Q Consensus 382 ~rW~IQIPRl~~~~~~~~~~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~~-~~~~ 435 (438)
|||+|||||+|.+ +++.|.++||||||+ |||.||| +||.||.|- +|++
T Consensus 999 vrW~IQiPRlY~~-----~k~~g~v~~F~~~L~-nIF~PLFeat~~P~~hp~L~~FL~~v~g 1054 (1453)
T PTZ00310 999 NKWMIQVPRVYKV-----FRAQNVIGSFGQYLD-NIFQPLWEASLHPSKHPKFHYFLNHVSG 1054 (1453)
T ss_pred ceEEEecchhhHH-----HHhcCCcCCHHHHHH-HHHHHhHhhhcCcccChHHHHHHHHhCc
Confidence 9999999999975 557899999999995 9999999 789999874 4544
No 6
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=100.00 E-value=7.9e-101 Score=802.43 Aligned_cols=256 Identities=65% Similarity=1.053 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeecccccccccCCHHHHHHHH
Q 013664 169 FFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFI 248 (438)
Q Consensus 169 F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~SacMnqk~LL~FI 248 (438)
|+.|++.|++++++||++|||++||+|||+||+||++||+++|..++|++||||||||||||||||||||||||||||||
T Consensus 1 ~~~D~~~l~~~~~~~~~~s~~~~RL~~L~~kf~l~~~lN~~~E~~~~k~~~~rdfyn~~KVD~~vh~s~cm~~k~Ll~FI 80 (496)
T cd01319 1 FYLDLEFLLALISDGPAKSFCYRRLQYLESKFQLHVLLNEDRELKEQKTVPHRDFYNVRKVDTHVHHSACMNQKHLLRFI 80 (496)
T ss_pred ChhHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCceeCceecccccccccCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHHHhcccCCCCc
Q 013664 249 KSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQ 328 (438)
Q Consensus 249 k~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~iFLktDN~i~ 328 (438)
|+|++++||+||+.++|+++||+|||+++|+++|+||||+|||||++++|||||+||+||||+|+++||+|||||||+|+
T Consensus 81 ~~k~~~~pd~vv~~~~g~~~TL~e~f~~l~~~~~~ltvd~L~~~a~~~~~~rfd~fn~kynp~g~~~Lr~iFLktdn~~~ 160 (496)
T cd01319 81 KKKLRTEPDEVVIFRDGKKLTLKEVFDSLKLTAYDLSVDTLDVHADRNTFHRFDKFNLKYNPIGESRLREIFLKTDNYIN 160 (496)
T ss_pred HHHHHcCCCcEEECCCCccccHHHHHHHcCCChhhCchhhcCcCCCCCccccccccccccCccchHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhcccccccccccccc
Q 013664 329 GRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQN 408 (438)
Q Consensus 329 G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~~~~~~g~~~n 408 (438)
|||||||||+||+++|++|||+||+||||||++++||++||+|+++|||+|+||||+|||||+|.+ +++.|.++|
T Consensus 161 G~y~Ael~k~v~~~le~~kyq~~E~rlsiyG~~~~Ew~~lA~W~~~~~l~s~n~rW~iqipR~y~~-----~~~~g~~~~ 235 (496)
T cd01319 161 GRYLAEITKEVFSDLEESKYQHAEYRLSIYGRSKDEWDKLASWVVDNDLFSPNVRWLIQIPRLYDV-----YKKSGIVNS 235 (496)
T ss_pred hHhHHHHHHHHHHHHHhccceeEEEEEEEeCCCHHHHHHHHHHHHHcCCCCCCceEEEecchhHHH-----HhhcCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999975 447799999
Q ss_pred HHHHhhhccccccc-------cCchhHHH
Q 013664 409 FSFWIKCNVCFPLL-------SHLYMHVC 430 (438)
Q Consensus 409 f~~~l~~niF~Plf-------~~~~~~~~ 430 (438)
|||||+ |||.||| +||.||.|
T Consensus 236 Fq~~L~-nIF~PLfeat~~P~~~p~l~~f 263 (496)
T cd01319 236 FQEMLE-NIFEPLFEATKDPSSHPELHVF 263 (496)
T ss_pred HHHHHH-HHHHHHHHHhcCcccCHHHHHH
Confidence 999995 9999999 66777765
No 7
>PTZ00310 AMP deaminase; Provisional
Probab=100.00 E-value=7.9e-94 Score=804.43 Aligned_cols=339 Identities=22% Similarity=0.340 Sum_probs=300.4
Q ss_pred ccCCcceeeeCCCCCCChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeC
Q 013664 66 EQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQD 145 (438)
Q Consensus 66 ~~~~f~rv~i~~~~~~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~ 145 (438)
+.+++.+|.|+|+++ ..|+.+|+++|..||.+|++|+..++... +. +..+|.. ..+.++.++|+|+|
T Consensus 61 ~~~~~~~v~idgddg-~~~~~~~~~~l~~ai~~r~~yk~~d~g~~-~g----------~~~~~~~-~~~~~~~~~~~~~~ 127 (1453)
T PTZ00310 61 VASTMFRVVIDGDDG-GVDMRKVHGRIAAAIRVRQLYKPTDTKVP-EG----------EREQPSD-STPMPSLVTIVQRD 127 (1453)
T ss_pred cccceEEEEecCCCc-chHHHHHHHHHHHHHHHHHhhhccCCCcC-cC----------CccCccc-cCCCCCceEEEEeC
Confidence 567899999999775 66999999999999999999997643211 10 1111111 12235677899999
Q ss_pred cEEEEecCCCCCccccCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCccc
Q 013664 146 GVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYN 225 (438)
Q Consensus 146 GV~~v~~~~~~~~~~~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYN 225 (438)
|||+|++.+. ...+| |+|++|+.|++.|++++++|||+|||++||+|||+||+||++||+++|..+++..+||||||
T Consensus 128 GV~~v~~~~~--~~~~~-p~~~~F~~D~~~l~~~v~~g~~ks~c~~RL~~Le~Kf~L~~llN~~~E~~~~~~~~~~dFyn 204 (1453)
T PTZ00310 128 GVYRFSGMDT--SVVLP-PPWEQYVRDVQAVYLTVGNGPCLSACRHRLTIIQERSRMFFLLNAEIEERADLYKAGGVFSP 204 (1453)
T ss_pred CEEEeecCCc--ccccC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHchhhhhhcCcCCCCCceee
Confidence 9999986542 34456 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCC-CCcccccccCccc--CCCccccCc
Q 013664 226 VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLT-GYDLNVDLLDVHA--DKSTFHRFD 302 (438)
Q Consensus 226 vrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~-~~~LtVD~Ldvha--~~~tfhrfD 302 (438)
||||||||||||||||||||||||+|++++||+||+.++|+.+||+|||+++|++ +++||||+||||| +++||||||
T Consensus 205 ~rKVDthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~~Gk~~TL~evFesl~lt~~~dLTVd~Ldvha~~drntfhrFD 284 (1453)
T PTZ00310 205 CTKVDNAVLLSTSVDAQELLEFVVTTYREQPRAPLRLRDGSNSTLREYLEAHGVRDPRELTVEGLGWQPTKYRNKYGQYD 284 (1453)
T ss_pred cceeecccchhccCCHHHHHHHHHHHHhcCCCcEEEcCCCccccHHHHHHhcCCCCccccchhhcCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999996 8999999999999 789999999
Q ss_pred cccCCCCCCCh--hHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccce--eeEEEEEeecCChhHHHHHHHHHHHCCCC
Q 013664 303 KFNLKYNPCGQ--SRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQ--MAEYRISIYGRKQSEWDQLASWIVNNELY 378 (438)
Q Consensus 303 ~fn~kynP~G~--s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ--~aE~rlsIYGrs~~EW~kLA~W~~~~~l~ 378 (438)
+||.| ||+|+ ++||+||||| +|+|||++||+||+++|++||| ++|+||||||++++||++||+|+++|+|+
T Consensus 285 kFn~K-NP~G~~~s~LReiFLkT----~G~y~a~liK~vi~~lE~sKyQ~q~~E~rlSIYGr~~~EW~kLA~Wvv~~~l~ 359 (1453)
T PTZ00310 285 LFDAK-NPMGALGAELRQSFLSL----HGNLCGKLLRRELERREYQKQQPQATEYSLPLYGHHPEELTDLAEWVRRQGFG 359 (1453)
T ss_pred ccccc-CCCccchhHHHHHHHhc----CcHHHHHHHHHHHHHHHhccccceeeEEEEEEeCCChhHHHHHHHHHHHCCCC
Confidence 99999 99999 9999999999 6999999999999999999997 69999999999999999999999999999
Q ss_pred C-CCceEEEEecchhhhccccccccccccccHHHHhhhccccccc-------c--CchhHHH
Q 013664 379 S-ENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------S--HLYMHVC 430 (438)
Q Consensus 379 S-~n~rW~IQIPRl~~~~~~~~~~~~g~~~nf~~~l~~niF~Plf-------~--~~~~~~~ 430 (438)
| +||||+|||+ | ++...++..+.++||||||+ |||.||| + ||.||.|
T Consensus 360 s~~nvRWlIQIv--y--k~~~~~~~~~~v~nFqd~Ld-NIF~PLFeaTl~P~~~~~p~L~~F 416 (1453)
T PTZ00310 360 PFSRNRWILAIS--F--KELGPFQVPSSCTTVQDQLD-NIFLPLFKATLCPSDPQWSDVAWL 416 (1453)
T ss_pred ccCCceEEEEEE--E--eccccccccccccCHHHHHH-HHHHHHHHHhcCcCcCCCHHHHHH
Confidence 6 7999999993 3 33334556788999999995 9999999 2 5777776
No 8
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.2e-08 Score=104.47 Aligned_cols=132 Identities=14% Similarity=0.006 Sum_probs=110.2
Q ss_pred ccccccCcccCCCccccCccccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChh
Q 013664 284 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQS 363 (438)
Q Consensus 284 LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~ 363 (438)
+.++.+.+++.+..+|++...+.++++.++...|..+.++.+...+.+++++.++......-.+|+...+++.-++++.+
T Consensus 2 ~~~~~~~~~~pkaelH~HL~g~l~p~~v~~la~r~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~~y~~~~v~~~~~ 81 (345)
T COG1816 2 MDILELIRHLPKAELHRHLEGSLRPELVLELARRYGIALPPAEFDETILEELRAEYNKFNDLQEFLEKYYRGASVLRTEE 81 (345)
T ss_pred cchHHHHhhchhhHhhhcccCCcCHHHHHHHHHHhCccCCcccccchhHHHHHHHHhccccHHHHHHHHHHHHHhhccHH
Confidence 35677888999999999999999999999888888998888888888888886665544444456666666777778999
Q ss_pred HHHHHHHHHHHCCCCCCCceEEEEecchhhhccccccccccccccHHHHhhhccccccc
Q 013664 364 EWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL 422 (438)
Q Consensus 364 EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~~~~~~g~~~nf~~~l~~niF~Plf 422 (438)
+|.+||.|++++...+.+++|.||++| |. .+.+.+.+++|.+.+. ++|.|+-
T Consensus 82 ~~~~la~~~~~~~~~~~~vy~Ei~f~p-~~-----~t~~~l~~~~~~e~~~-~~~~~~~ 133 (345)
T COG1816 82 DFYRLAYEYLEDAAADNVVYAEIRFDP-YL-----HTKRGLSVDTVVEGLI-AGFRPAE 133 (345)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCc-ch-----hhhccCCHHHHHHHHH-HHHHHHh
Confidence 999999999999999999999999999 53 2446678999999985 8999997
No 9
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=98.19 E-value=7.8e-07 Score=88.71 Aligned_cols=101 Identities=26% Similarity=0.299 Sum_probs=77.3
Q ss_pred eeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccC
Q 013664 227 RKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNL 306 (438)
Q Consensus 227 rKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~ 306 (438)
.|||.|+|++|||.+..|++++++
T Consensus 2 PK~eLH~Hl~Gsi~~~~l~~l~~~-------------------------------------------------------- 25 (305)
T cd00443 2 PKVELHAHLSGSISPETLLELIKK-------------------------------------------------------- 25 (305)
T ss_pred CceeEEecCcCCCCHHHHHHHHHH--------------------------------------------------------
Confidence 599999999999999999999999
Q ss_pred CCCCCChhHHHHHhcccCCC-CchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChh-HHHHHHHHHHHCCCC------
Q 013664 307 KYNPCGQSRLREIFLKQDNL-IQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQS-EWDQLASWIVNNELY------ 378 (438)
Q Consensus 307 kynP~G~s~LR~iFLktDN~-i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~-EW~kLA~W~~~~~l~------ 378 (438)
+..++|..+.+. ..+++|++++++++.++.+++++++|+|++.++.... .|.....|-.-...+
T Consensus 26 --------~f~~~f~~~~~~l~~~~~l~~~~~~~~~~~~~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T cd00443 26 --------EFFEKFLLVHNLLQKGEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQW 97 (305)
T ss_pred --------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 566777777777 6889999999999999999999999999999875443 344333332211111
Q ss_pred --CCCceEEEEecch
Q 013664 379 --SENVVWLIQVWIS 391 (438)
Q Consensus 379 --S~n~rW~IQIPRl 391 (438)
.-.++|++.+-|.
T Consensus 98 ~~~I~~~lI~~~~R~ 112 (305)
T cd00443 98 FPPIKVRLILSVDRR 112 (305)
T ss_pred cCCeeEeEEEEEeCC
Confidence 1366777777764
No 10
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=96.86 E-value=9.9e-05 Score=73.42 Aligned_cols=128 Identities=18% Similarity=0.130 Sum_probs=75.1
Q ss_pred cceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCC-------ccccHHHHHHhCCCCCCcccccccCcccCCCc
Q 013664 225 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDG-------TYLTLKEVFESLDLTGYDLNVDLLDVHADKST 297 (438)
Q Consensus 225 NvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dG-------k~~TL~evFe~l~~~~~~LtVD~Ldvha~~~t 297 (438)
|..|||.|+|++|||+...|++++++....++........+ ..-+|.+.++.+
T Consensus 1 m~pK~eLH~HL~Gsi~~~~l~ela~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------- 60 (331)
T PF00962_consen 1 MLPKAELHIHLDGSISPETLLELAKKNNICELPADTDEELEKHLTRPENFRSLNEFLELF-------------------- 60 (331)
T ss_dssp TS-EEEEEEEGGGSS-HHHHHHHHHHCTCC-TTSCSSHHHHHHHHCTSSCSSHHHHHHHH--------------------
T ss_pred CCCEEEeeeCCccCCCHHHHHHHHHhCCCCccccccchhhhhHHhhhhhcccHHHHHHHH--------------------
Confidence 57899999999999999999999999887644332221111 111222222111
Q ss_pred cccCccccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEee---cCC-----hhHHHHHH
Q 013664 298 FHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIY---GRK-----QSEWDQLA 369 (438)
Q Consensus 298 fhrfD~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIY---Grs-----~~EW~kLA 369 (438)
....-.+..+ ..=+=+.+++.+++++.-+...+++|+|++.. -.+ ..-.+.+.
T Consensus 61 -----------------~~~~~~~~~~--~~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~ 121 (331)
T PF00962_consen 61 -----------------DIISSVLQAD--RTPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAII 121 (331)
T ss_dssp -----------------HHHHHHHTCS--TSHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHH
T ss_pred -----------------HHhhhhhhhc--ccHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHH
Confidence 1111111111 14455667788889999999999999999632 222 23344555
Q ss_pred HHHHHCCCCC-CCceEEEEecch
Q 013664 370 SWIVNNELYS-ENVVWLIQVWIS 391 (438)
Q Consensus 370 ~W~~~~~l~S-~n~rW~IQIPRl 391 (438)
..+.+..=-+ -.++|++.+-|.
T Consensus 122 ~~~~~a~~~~~i~~~li~~~~R~ 144 (331)
T PF00962_consen 122 EGIDRAEKEFGIKVRLIISVLRH 144 (331)
T ss_dssp HHHHHHHHHHTTEEEEEEEEETT
T ss_pred hhhhhcccccccccccccccccc
Confidence 5555421112 578999999984
No 11
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=85.81 E-value=4.6 Score=41.68 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHhhhccceeeEEEEEe---ec-----CChhHHH-HH----HHHHHHCCCCCCCceEEEEecchh
Q 013664 330 RFLAELTKQVFSDLEASKYQMAEYRISI---YG-----RKQSEWD-QL----ASWIVNNELYSENVVWLIQVWISM 392 (438)
Q Consensus 330 ~YlAEliK~v~~~lE~skyQ~aE~rlsI---YG-----rs~~EW~-kL----A~W~~~~~l~S~n~rW~IQIPRl~ 392 (438)
+=|.+++++++.++.+....++|+|++. |. .+.+++- -+ +.+-..+.- --.+||++.+-|.+
T Consensus 66 ~~~~~~~~~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~-~i~v~lI~~~~R~~ 140 (345)
T cd01321 66 PIFRDYYRRLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPD-FIGLKIIYATLRNF 140 (345)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCC-CceEEEEEEecCCC
Confidence 3467889999999999999999999976 32 3455552 22 222233311 13688999999954
No 12
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=72.32 E-value=3.4 Score=41.24 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=35.3
Q ss_pred cceeecccccccccCCHHHHHHHHHHHhccCCCceE----Ec-cCCccccHHHHHHhC
Q 013664 225 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVV----IF-RDGTYLTLKEVFESL 277 (438)
Q Consensus 225 NvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV----~~-~dGk~~TL~evFe~l 277 (438)
|.-|||.|+|+.||+....|.++.++.=...|.... .. .-+...+|.+.|+..
T Consensus 1 ~lpK~elH~Hl~Gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 58 (325)
T cd01320 1 NLPKAELHLHLDGSLRPETILELAKKNGITLPASDVELLELVVAAYNFSDLQDFLAKY 58 (325)
T ss_pred CCCceEEeecccCCCCHHHHHHHHHHhCCCCCCCCHHHHHHHhccccCCCHHHHHHHH
Confidence 567999999999999999999988876333332111 01 123345777777654
No 13
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=66.77 E-value=3.8 Score=41.04 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.2
Q ss_pred eeecccccccccCCHHHHHHHHHHH
Q 013664 227 RKVDTHVHHSACMNQKHLLRFIKSK 251 (438)
Q Consensus 227 rKVDthvh~SacMnqk~LL~FIk~K 251 (438)
-|||.|+|+.||.....|.+..++.
T Consensus 2 pK~eLH~Hl~Gsi~~~~l~~l~~~~ 26 (324)
T TIGR01430 2 PKAELHLHLEGSIRPETLLELAQKN 26 (324)
T ss_pred CceeeEecccCCCCHHHHHHHHHHc
Confidence 4999999999999999999977644
No 14
>PTZ00124 adenosine deaminase; Provisional
Probab=65.39 E-value=20 Score=37.57 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=71.6
Q ss_pred ceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCcccc
Q 013664 226 VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFN 305 (438)
Q Consensus 226 vrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn 305 (438)
.-||+-|+|+.||+....|++..++. ...+ +.|+.++.+...... . -.+|+ ..|..|+
T Consensus 35 lPKvELH~HLdGsi~~~tl~~La~~~-~~~~----------~~~~~~l~~~~~~~~-~--~~~L~-----~fl~~f~--- 92 (362)
T PTZ00124 35 IPKCELHCHLDLCFSVDFFLSCIRKY-NLQP----------NLSDEEILDYYLFAK-G--GKSLG-----EFVEKAI--- 92 (362)
T ss_pred CCceeEeecccCCCCHHHHHHHHHHc-CCCC----------CCCHHHHHHHHhccc-C--CCCHH-----HHHHHHH---
Confidence 56999999999999999998888532 2221 125566554321110 0 00110 0111111
Q ss_pred CCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEe-ec---CChhHHHHHHHHHHH------C
Q 013664 306 LKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISI-YG---RKQSEWDQLASWIVN------N 375 (438)
Q Consensus 306 ~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsI-YG---rs~~EW~kLA~W~~~------~ 375 (438)
....++ ..-+=|.+++.+++.+..+....++|+|++- +. +..+ |+..-..+++ .
T Consensus 93 ---------~~~~vl------~t~~dl~r~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~-~~~vv~av~~g~~~a~~ 156 (362)
T PTZ00124 93 ---------RVADIF------NDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLD-IDLIHQAIVKGIKEAVE 156 (362)
T ss_pred ---------HHHHHh------CCHHHHHHHHHHHHHHHHHcCCEEEEEEcCchhhhcCCCCC-HHHHHHHHHHHHHHHHh
Confidence 112222 1224478899999999999999999999976 32 1111 3333333321 1
Q ss_pred C-CCCCCceEEEEecch
Q 013664 376 E-LYSENVVWLIQVWIS 391 (438)
Q Consensus 376 ~-l~S~n~rW~IQIPRl 391 (438)
. =+--.++|++.+-|.
T Consensus 157 ~~~~gI~~~lI~~~~R~ 173 (362)
T PTZ00124 157 LLDHKIEVGLLCIGDTG 173 (362)
T ss_pred ccCCCceEeEEEEecCC
Confidence 1 023468999999884
No 15
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=61.10 E-value=7.1 Score=31.18 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCC
Q 013664 241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLT 280 (438)
Q Consensus 241 qk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~ 280 (438)
|++.|+||++-+.++ |-+.|.+||.+.+|+.
T Consensus 8 Q~~vL~~I~~~~~~~---------G~~Pt~rEIa~~~g~~ 38 (65)
T PF01726_consen 8 QKEVLEFIREYIEEN---------GYPPTVREIAEALGLK 38 (65)
T ss_dssp HHHHHHHHHHHHHHH---------SS---HHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHc---------CCCCCHHHHHHHhCCC
Confidence 789999999987754 7888999999999986
No 16
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=57.81 E-value=21 Score=32.73 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=36.7
Q ss_pred CchhHHHHHHHHHHHHhhhccceeeEE------EEEeecCChhHHHH-HHHHHHHCCCC
Q 013664 327 IQGRFLAELTKQVFSDLEASKYQMAEY------RISIYGRKQSEWDQ-LASWIVNNELY 378 (438)
Q Consensus 327 i~G~YlAEliK~v~~~lE~skyQ~aE~------rlsIYGrs~~EW~k-LA~W~~~~~l~ 378 (438)
|+=+.=.|.+++|++.|.+.. .||| +.-||=++++||.. |-+|+.++|+.
T Consensus 57 I~R~L~~e~~~~Il~~Lv~~g--~aew~~~~~~~~~I~Wrt~~eWa~~I~~Wv~~~G~~ 113 (139)
T PF05871_consen 57 INRRLSPEFIREILDELVQKG--NAEWIDKSKTRCLIYWRTPEEWADLIYDWVESTGQL 113 (139)
T ss_dssp TTEE--HHHHHHHHHHHHCTT--SEEECSTTSCEEEE-SS-HHHHHHHHHHHHHCCTTT
T ss_pred ccCCCCHHHHHHHHHHHHhcC--CeEEeeCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC
Confidence 555666677888888888885 5666 68899999999965 68999999854
No 17
>PRK09358 adenosine deaminase; Provisional
Probab=50.30 E-value=10 Score=38.26 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=24.2
Q ss_pred ccceeecccccccccCCHHHHHHHHHHH
Q 013664 224 YNVRKVDTHVHHSACMNQKHLLRFIKSK 251 (438)
Q Consensus 224 YNvrKVDthvh~SacMnqk~LL~FIk~K 251 (438)
-+.-|||.|+|+.||+....|.+..++.
T Consensus 8 ~~lpK~eLH~Hl~Gs~~~~~l~~l~~~~ 35 (340)
T PRK09358 8 RSLPKAELHLHLDGSLRPETILELARRN 35 (340)
T ss_pred hcCCceeEEecccCCCCHHHHHHHHHHc
Confidence 3567999999999999999998877665
No 18
>KOG4741 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=28 Score=33.11 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=45.7
Q ss_pred ccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHHHhcccCCCC
Q 013664 262 FRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLI 327 (438)
Q Consensus 262 ~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~iFLktDN~i 327 (438)
.++|.++++++|-+.++....+-+++.+.-+-++..+..|=+ .-|+..+++-+-|.|-+|||
T Consensus 86 ~~ngrpl~~r~v~Ei~~t~l~e~~~~~Itq~eHP~Lg~pyy~----LHPC~Tse~mke~~k~sNyi 147 (173)
T KOG4741|consen 86 CRNGRPLRVRQVAEILGTKLEENDAIVITQSEHPTLGIPYYK----LHPCDTSELMKEIPKRSNYI 147 (173)
T ss_pred hcCCCchhhhhhHHhhcCccccCccceeeeccCCcccceeee----ecCCcHHHHHhhcCCchHHH
Confidence 379999999999999887665555565655555555544432 33999999999999999765
No 19
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=34.33 E-value=1.7e+02 Score=31.53 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=64.5
Q ss_pred CchhHHHHHHHHHHHHhhhccceeeEEE-E-----EeecCChhHHH------HHHHHHHHCCCCCCCceEEEEecchhhh
Q 013664 327 IQGRFLAELTKQVFSDLEASKYQMAEYR-I-----SIYGRKQSEWD------QLASWIVNNELYSENVVWLIQVWISMFL 394 (438)
Q Consensus 327 i~G~YlAEliK~v~~~lE~skyQ~aE~r-l-----sIYGrs~~EW~------kLA~W~~~~~l~S~n~rW~IQIPRl~~~ 394 (438)
+.-.=|+.++-+.+++..+...+++|+| . ++-|.-.-||. -+.+-...++ -..|=+.++=|....
T Consensus 114 ~~~~~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~~~fp---I~sklI~~~~R~~~~ 190 (399)
T KOG1097|consen 114 IYAPAFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAKRDFP---IKSKLIMCCIRHMPP 190 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHcCceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCC---CcceEEEeeccCCCh
Confidence 4556678888999999999999999999 3 45563333432 2344455666 344666777774432
Q ss_pred ccccccccccccccHHHHhhhccccccc-------cCc----hhHHHHHHhhh
Q 013664 395 KSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHL----YMHVCAHVCAY 436 (438)
Q Consensus 395 ~~~~~~~~~g~~~nf~~~l~~niF~Plf-------~~~----~~~~~~~~~~~ 436 (438)
....+++++....|.+.|-| .+| .++-|+.|.|+
T Consensus 191 --------e~~~e~v~~~~~~~~~~~~~VvGidL~G~e~~~~p~~~f~~vl~~ 235 (399)
T KOG1097|consen 191 --------EVAEETVSEAKELNKLFPNFVVGIDLVGQEDLGGPLSLFLEVLAK 235 (399)
T ss_pred --------HHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCCCChhhhHHHHHh
Confidence 22446777766668888988 444 34556666554
No 20
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=33.35 E-value=70 Score=29.34 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=29.1
Q ss_pred CCchhHHH----HHHHHHHHH--hhhccceeeEEEEEeecCChhHHHHHHHHHH
Q 013664 326 LIQGRFLA----ELTKQVFSD--LEASKYQMAEYRISIYGRKQSEWDQLASWIV 373 (438)
Q Consensus 326 ~i~G~YlA----EliK~v~~~--lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~ 373 (438)
|+.|.|.| |++|+++.+ +|....+..+ .|.+||+|+++-+.
T Consensus 69 y~~GN~ka~rR~~~lke~l~elgie~eRv~~~w-------iSa~E~ekf~e~~~ 115 (132)
T COG1908 69 YISGNYKAKRRMELLKELLKELGIEPERVRVLW-------ISAAEGEKFAETIN 115 (132)
T ss_pred eeccchHHHHHHHHHHHHHHHhCCCcceEEEEE-------EehhhHHHHHHHHH
Confidence 56777776 457777777 5666666555 45699999998765
No 21
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=86 Score=29.98 Aligned_cols=47 Identities=28% Similarity=0.573 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhhhccceeeE------EEEEeecCChhHHHHH-HHHHHHCCCC
Q 013664 330 RFLAELTKQVFSDLEASKYQMAE------YRISIYGRKQSEWDQL-ASWIVNNELY 378 (438)
Q Consensus 330 ~YlAEliK~v~~~lE~skyQ~aE------~rlsIYGrs~~EW~kL-A~W~~~~~l~ 378 (438)
+.=-+.|.+|.+++++.+- || -|.-||=|+++||.++ -.|+.+.|-.
T Consensus 65 ~Ls~~~i~~Il~~l~k~g~--~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg~~ 118 (174)
T KOG4068|consen 65 RLSQEFIDEILEELEKKGL--AEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSGQL 118 (174)
T ss_pred cCCHHHHHHHHHHHHHccC--CcccccCceEEEEEEcCHHHHHHHHHHHHHHcCcC
Confidence 3334567777788877653 33 3678999999999885 6899998865
No 22
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=30.78 E-value=65 Score=23.49 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=20.4
Q ss_pred ccccccCCHHHHHHHHHHHhccCCCceEE
Q 013664 233 VHHSACMNQKHLLRFIKSKLRKEPDEVVI 261 (438)
Q Consensus 233 vh~SacMnqk~LL~FIk~Kl~~epd~vV~ 261 (438)
++.||..++.+|++||..- .|..++.
T Consensus 12 ~~fSgHad~~~L~~~i~~~---~p~~vil 37 (43)
T PF07521_consen 12 IDFSGHADREELLEFIEQL---NPRKVIL 37 (43)
T ss_dssp SGCSSS-BHHHHHHHHHHH---CSSEEEE
T ss_pred EeecCCCCHHHHHHHHHhc---CCCEEEE
Confidence 5699999999999999987 5666554
No 23
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=28.48 E-value=59 Score=27.18 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHH
Q 013664 239 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 318 (438)
Q Consensus 239 Mnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~ 318 (438)
|++..+++=+..-++.++++ ++|+.++.+.+|++. ..|..
T Consensus 1 ~~~~~~~~~~~~~i~~~~~~--------~~~~~~lA~~~~~S~--------------------------------~~l~r 40 (107)
T PRK10219 1 MSHQKIIQTLIAWIDEHIDQ--------PLNIDVVAKKSGYSK--------------------------------WYLQR 40 (107)
T ss_pred CchHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHCCCH--------------------------------HHHHH
Confidence 45555666556666655433 358888888777742 34555
Q ss_pred HhcccCCCCchhHHHHH-HHHHHHHhhhc
Q 013664 319 IFLKQDNLIQGRFLAEL-TKQVFSDLEAS 346 (438)
Q Consensus 319 iFLktDN~i~G~YlAEl-iK~v~~~lE~s 346 (438)
+|-+.-+.-=.+|+.++ +......|...
T Consensus 41 ~f~~~~g~s~~~~i~~~Rl~~a~~~L~~~ 69 (107)
T PRK10219 41 MFRTVTHQTLGDYIRQRRLLLAAVELRTT 69 (107)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHHcc
Confidence 55555555555666666 55555555443
No 24
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=27.44 E-value=91 Score=31.34 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=36.3
Q ss_pred ccccccccC-----CHHHHHHHHHHHhccCCCceEEc--cCCcc--c-cHHHHHHhCCCCCC
Q 013664 231 THVHHSACM-----NQKHLLRFIKSKLRKEPDEVVIF--RDGTY--L-TLKEVFESLDLTGY 282 (438)
Q Consensus 231 thvh~SacM-----nqk~LL~FIk~Kl~~epd~vV~~--~dGk~--~-TL~evFe~l~~~~~ 282 (438)
-+++|+.|- .-.+.|+=|++-|..+|++||++ .+.-. . .+..+|+.-++..+
T Consensus 63 ~~lcH~~~~~~~~~~~~d~L~~i~~fL~~nP~EvV~l~l~~~~~~~~~~~~~~~~~~gl~~~ 124 (270)
T cd08588 63 LRLCHSVCGLGDGGPLSDVLREVVDFLDANPNEVVTLFLEDYVSPGPLLRSKLFRVAGLTDL 124 (270)
T ss_pred EEEECCCccccCCccHHHHHHHHHHHHHhCCCcEEEEEEEeCCCcchHHHHHHhhhcCccce
Confidence 356667664 57888899999999999999985 33222 2 36777776565543
No 25
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=25.18 E-value=1.5e+02 Score=27.47 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHHhcCchh---hHHHHHHHHHHHHHH
Q 013664 165 DATTFFTDLHHILRVIALGNMR---TLCHHRLLLLEQKFN 201 (438)
Q Consensus 165 ~~~~F~~D~~~l~~~i~~g~~k---sfc~~RL~~Le~KF~ 201 (438)
.+++++..++.++..+...--+ .=|.|||++|+.+++
T Consensus 43 ~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln 82 (157)
T PF07304_consen 43 PIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLN 82 (157)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHh
Confidence 4567777888888766554334 357899999999887
No 26
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=25.12 E-value=1.2e+02 Score=30.18 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCc----hhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeecccccccccCCHHHHHH
Q 013664 171 TDLHHILRVIALGN----MRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLR 246 (438)
Q Consensus 171 ~D~~~l~~~i~~g~----~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~SacMnqk~LL~ 246 (438)
+|++.|-..+..|- +|=|.+.||+---.+|.-++..=+.. ..+||++|=.
T Consensus 84 ~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~~--------------------------~~~sQ~~lD~ 137 (224)
T COG4565 84 SDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALESH--------------------------QQLSQKELDQ 137 (224)
T ss_pred chHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHhhh--------------------------cccCHHHHHH
Confidence 67788878888887 57899999999888998876543321 2567777776
Q ss_pred HHHHHhccCCCceEEccCC-ccccHHHHHHhCCCCCCcccccccCc
Q 013664 247 FIKSKLRKEPDEVVIFRDG-TYLTLKEVFESLDLTGYDLNVDLLDV 291 (438)
Q Consensus 247 FIk~Kl~~epd~vV~~~dG-k~~TL~evFe~l~~~~~~LtVD~Ldv 291 (438)
-+.-+.+..+ .....+| ...||+.|.+.+...+..+|.|.|+=
T Consensus 138 l~~~~~k~~~--~~~LPkGi~~~Tl~~i~~~~~~~~~~~Taeela~ 181 (224)
T COG4565 138 LFNIQSKEQP--PDDLPKGLDELTLQKVREALKEPDQELTAEELAQ 181 (224)
T ss_pred HHhccccccC--cccCCCCcCHHHHHHHHHHHhCcCCccCHHHHHH
Confidence 6665444333 3334466 46899999998885556788887763
No 27
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=23.82 E-value=35 Score=29.92 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=12.9
Q ss_pred cccccccCCH----------HHHHHHHHHHh
Q 013664 232 HVHHSACMNQ----------KHLLRFIKSKL 252 (438)
Q Consensus 232 hvh~SacMnq----------k~LL~FIk~Kl 252 (438)
-||+|+||.. .++.+.|++++
T Consensus 68 ~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~ 98 (107)
T PF08821_consen 68 VIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF 98 (107)
T ss_pred EEEEcCCEecCCCCCCCCCHHHHHHHHHHHh
Confidence 4566655554 56666666665
No 28
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.55 E-value=4.6e+02 Score=26.60 Aligned_cols=113 Identities=16% Similarity=0.273 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhccCCC--ceEEccCCccccHHHHHH---hCCCCCCcccccccCcccCCCccccCccccCCCCCCChhH
Q 013664 241 QKHLLRFIKSKLRKEPD--EVVIFRDGTYLTLKEVFE---SLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSR 315 (438)
Q Consensus 241 qk~LL~FIk~Kl~~epd--~vV~~~dGk~~TL~evFe---~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~ 315 (438)
.++|.++|+. ++..+. .+...-+|..++ +..+ ..|++...+|+|+++ ..+| ++.. ..
T Consensus 75 r~dl~~li~~-i~~~~~l~~i~itTNG~ll~--~~~~~L~~aGl~~v~ISlDs~~----~e~~---~~i~----~~---- 136 (329)
T PRK13361 75 RRGCDQLVAR-LGKLPGLEELSLTTNGSRLA--RFAAELADAGLKRLNISLDTLR----PELF---AALT----RN---- 136 (329)
T ss_pred cccHHHHHHH-HHhCCCCceEEEEeChhHHH--HHHHHHHHcCCCeEEEEeccCC----HHHh---hhhc----CC----
Confidence 3566666654 333444 444556776443 3333 345655567787765 1222 1111 00
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEe-ecCChhHHHHHHHHHHHCCCCCCCceEEEEec
Q 013664 316 LREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISI-YGRKQSEWDQLASWIVNNELYSENVVWLIQVW 389 (438)
Q Consensus 316 LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsI-YGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIP 389 (438)
| -|.++++ .++.+.+.......+...+ -|.+.+|+..+++|+.+.|+ .++++-.+|
T Consensus 137 -------------g-~~~~vl~-~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi---~~~~ie~mP 193 (329)
T PRK13361 137 -------------G-RLERVIA-GIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL---DIAFIEEMP 193 (329)
T ss_pred -------------C-CHHHHHH-HHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 1 1333333 3344444444334444333 47899999999999999886 356554566
No 29
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=21.62 E-value=67 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.1
Q ss_pred ccccccccCCHHHHHHHHHHHhcc--CCCceE
Q 013664 231 THVHHSACMNQKHLLRFIKSKLRK--EPDEVV 260 (438)
Q Consensus 231 thvh~SacMnqk~LL~FIk~Kl~~--epd~vV 260 (438)
||||.|++|+..+.++=.-+|.+- +|+.-.
T Consensus 15 ~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FA 46 (87)
T cd01784 15 TNVRINSTMTTPQVLKLLLNKFKIENSAEEFA 46 (87)
T ss_pred eEEEEecCCCHHHHHHHHHHhccccCCHHHeE
Confidence 799999999999999988887664 455443
Done!