Query 013664
Match_columns 438
No_of_seqs 182 out of 332
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a3l_A AMP deaminase, AMPD; at 100.0 8E-102 3E-106 836.8 27.0 422 3-435 27-458 (701)
2 2pgf_A Adenosine deaminase; me 93.6 0.25 8.5E-06 49.4 9.5 125 226-391 44-182 (371)
3 4gxw_A Adenosine deaminase; am 78.6 3.3 0.00011 41.9 6.6 61 328-391 90-161 (380)
4 3rys_A Adenosine deaminase 1; 78.1 4.5 0.00015 40.2 7.3 124 225-392 12-146 (343)
5 3iar_A Adenosine deaminase; pu 77.8 7.4 0.00025 39.1 8.9 129 224-392 4-155 (367)
6 3pao_A Adenosine deaminase; st 71.4 4.3 0.00015 40.0 5.2 123 226-392 10-143 (326)
7 3cuq_C Vacuolar protein-sortin 47.7 23 0.00078 32.5 5.1 44 333-378 71-121 (176)
8 3k2z_A LEXA repressor; winged 39.1 15 0.00053 32.8 2.6 33 240-281 6-38 (196)
9 2jt1_A PEFI protein; solution 36.1 25 0.00087 27.7 3.1 33 241-281 6-38 (77)
10 1xb4_A VPS25, hypothetical 23. 28.9 77 0.0026 29.6 5.5 44 333-378 87-145 (202)
No 1
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Probab=100.00 E-value=7.9e-102 Score=836.78 Aligned_cols=422 Identities=79% Similarity=1.214 Sum_probs=346.0
Q ss_pred CCCCCcceeeccCCCCCCCCCCccccchhh--hhhhhhhhhccCCCCCCCCCCCCcchhhhccCcccCCcceeeeCCCCC
Q 013664 3 DSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEV 80 (438)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~mirS~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~rv~i~~~~~ 80 (438)
.+.+.|+.|+++||+.+.. +..++++ ....+|+||+|+++++++++++|+++++++++|.+++||||.|++ ++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~~~il~~~~~~~~f~rv~i~~-~~ 101 (701)
T 2a3l_A 27 NSEGLDASYLQANGDNEMP----ADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNVPL-EV 101 (701)
T ss_dssp ---------------------------------------------------CCCTTTCCCCCCCCCSCCCCCCCCCC-CC
T ss_pred cccCCcccccccccccccc----hhhccchhhHHHHhhhhccccccccccCCCCccccccccCCcccccceeEEcCC-CC
Confidence 3567899999999998753 5556655 566699999999999999999999999999999999999999966 56
Q ss_pred CChhHHHHHHHHHHHHHHhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCCCCCCceEEeeCcEEEEecCCCCCccc
Q 013664 81 PSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKEEL 160 (438)
Q Consensus 81 ~~~d~~~a~~~l~~aL~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~GV~~v~~~~~~~~~~ 160 (438)
|..|+++|++.|.+||.||+||++.....+|+.++..++++|.|.+|||...+.+++++.|+|+||||+||.+++..+..
T Consensus 102 ~~~e~~~~~~~i~~al~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~ 181 (701)
T 2a3l_A 102 PTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDL 181 (701)
T ss_dssp CCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCCCCCCCCCCCCCCBTTBCCCCCSSCCSSCS
T ss_pred CCHHHHHHHHHHHHHHhhHHHhcccccCCchhccccccCCCCCCCCCcccCCCCCcccceEEeeccEEEEecCCCccccc
Confidence 78899999999999999999999987777887766666778888999999988888999999999999999877777889
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHhccchhhhhhcCCCCCCcccceeecccccccccCC
Q 013664 161 YPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 240 (438)
Q Consensus 161 ~pip~~~~F~~D~~~l~~~i~~g~~ksfc~~RL~~Le~KF~Lh~lLN~~~E~~~~K~~phRDFYNvrKVDthvh~SacMn 240 (438)
+|+|||++|+.|++.|+++|++||+||||++||+|||+||+||.+||+.+|..++|++|||||||++|||+|+|+||||+
T Consensus 182 ~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~Rl~~l~~kf~l~~~ln~~~E~~~~k~~~~~dFy~~~KVDlHvHLsg~m~ 261 (701)
T 2a3l_A 182 FPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMN 261 (701)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCCTTTSCEEEEEEETTTCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhccCCCCccccCCccceeecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccccCCCCCCChhHHHHHh
Q 013664 241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIF 320 (438)
Q Consensus 241 qk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn~kynP~G~s~LR~iF 320 (438)
|++||+|||+|++.+|+++|+.++|+.+||+|+|+.++++.|+||||+|+|||++++|||||+||+||||+|+++||+||
T Consensus 262 ~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~~ydltvd~L~~~ad~~~F~rFd~Fn~kynp~g~~~LreiF 341 (701)
T 2a3l_A 262 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIF 341 (701)
T ss_dssp HHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCCSCSSCCCCCSSSHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHhhccCCCCceEecCCCCcccHHHHHHHcCCccccccccccccccccchhhhhcccccccChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEeecCChhHHHHHHHHHHHCCCCCCCceEEEEecchhhhcccccc
Q 013664 321 LKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQVWISMFLKSHHRC 400 (438)
Q Consensus 321 LktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYGrs~~EW~kLA~W~~~~~l~S~n~rW~IQIPRl~~~~~~~~~ 400 (438)
|||||+|.|+|||+++++|++++++++||++|+|+++||++..+|+++++|++++++.+.++||+|||||.+.. .
T Consensus 342 lktdn~i~~e~l~ri~~evled~a~dgV~Y~ElR~sp~~~~~~~~~~l~~~v~~~~~~~~~vr~ii~i~R~~~~-----~ 416 (701)
T 2a3l_A 342 LKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNI-----Y 416 (701)
T ss_dssp SCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHHHHTTTCCCSSEEEEEEEECCHHH-----H
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHcCCeEEEEEeccccCCCCcHHHHHHHHHhcCccCcceEEEEEeecccCH-----H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998854 3
Q ss_pred ccccccccHHHHhhhccccccc-------cCchhHHHHH-Hhh
Q 013664 401 YEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCAH-VCA 435 (438)
Q Consensus 401 ~~~g~~~nf~~~l~~niF~Plf-------~~~~~~~~~~-~~~ 435 (438)
...+.+.+|+++|+ |||.||| +||.++.+-+ |++
T Consensus 417 ~a~~~v~~F~~~l~-nIF~PL~e~t~~p~~~~~l~~~~~~VvG 458 (701)
T 2a3l_A 417 KDMGIVTSFQNILD-NIFIPLFEATVDPDSHPQLHVFLKQVVG 458 (701)
T ss_dssp TTSSSCSSTHHHHH-HHSSHHHHHHHCGGGSTTTHHHHTTEEE
T ss_pred HhcChHHHHHHHHH-hhhhHHHHhhcCcccCHHHHhcCCCEEE
Confidence 36688999999996 9999999 5678777653 443
No 2
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=93.64 E-value=0.25 Score=49.37 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=74.0
Q ss_pred ceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCcccc
Q 013664 226 VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFN 305 (438)
Q Consensus 226 vrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn 305 (438)
.-|||.|+|+.||++.+.|++..+++-.. |. .|..++.+.+... ..+..++.|
T Consensus 44 lPK~eLH~Hl~gsl~~~~l~~la~~~~~~-p~----------~~~~~l~~~~~~~---------------~~~~~L~~~- 96 (371)
T 2pgf_A 44 IPKCELHCHLDLCFSADFFVSCIRKYNLQ-PN----------LSDEEVLDYYLFA---------------KGGKSLGEF- 96 (371)
T ss_dssp SCEEEEEEEGGGCCCHHHHHHHHHHTTCC-TT----------SCHHHHHHHHCCT---------------TCCSCHHHH-
T ss_pred CcHhhheeCCccCCCHHHHHHHHHHcCCC-CC----------CCHHHHHHHHhcc---------------cCCCCHHHH-
Confidence 57999999999999999999977755322 32 1223332211110 011111111
Q ss_pred CCCCCCChhHHHHHhcccCC-CCchhHHHHHHHHHHHHhhhccceeeEEEEEeec------CChhHHH-----HHHHHHH
Q 013664 306 LKYNPCGQSRLREIFLKQDN-LIQGRFLAELTKQVFSDLEASKYQMAEYRISIYG------RKQSEWD-----QLASWIV 373 (438)
Q Consensus 306 ~kynP~G~s~LR~iFLktDN-~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsIYG------rs~~EW~-----kLA~W~~ 373 (438)
.++|...-. ....+.+.+++++++.++-.+..+++|+|++.+. -+..+.- -+++-..
T Consensus 97 -----------l~~~~~~~~~~~t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~ 165 (371)
T 2pgf_A 97 -----------VEKAIKVADIFHDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVE 165 (371)
T ss_dssp -----------HHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 122211111 2367889999999999999999999999987542 3332221 1222112
Q ss_pred HC--CCCCCCceEEEEecch
Q 013664 374 NN--ELYSENVVWLIQVWIS 391 (438)
Q Consensus 374 ~~--~l~S~n~rW~IQIPRl 391 (438)
+. |+ ..+|+++++|.
T Consensus 166 ~~~~gi---~~~li~~~~r~ 182 (371)
T 2pgf_A 166 LLDHKI---HVALMCIGDTG 182 (371)
T ss_dssp HTTTSS---EEEEEEEEEES
T ss_pred HccCCC---EEEEEEEecCC
Confidence 33 32 57999999984
No 3
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=78.55 E-value=3.3 Score=41.86 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHhhhccceeeEEEEEe------ecCChhHH-----HHHHHHHHHCCCCCCCceEEEEecch
Q 013664 328 QGRFLAELTKQVFSDLEASKYQMAEYRISI------YGRKQSEW-----DQLASWIVNNELYSENVVWLIQVWIS 391 (438)
Q Consensus 328 ~G~YlAEliK~v~~~lE~skyQ~aE~rlsI------YGrs~~EW-----~kLA~W~~~~~l~S~n~rW~IQIPRl 391 (438)
.-+=|.+++.++++++......++|+|++- -|.+.++. +-+.+--.+.| -.+||++++.|.
T Consensus 90 t~ed~~r~a~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~g---i~~rlI~~~~R~ 161 (380)
T 4gxw_A 90 RPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTGMRDAARDFG---IGARLIPSIDRE 161 (380)
T ss_dssp SHHHHHHHHHHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC---CEEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEcCHHHhccccCCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEeecCC
Confidence 345688999999999999999999999963 24444443 22333334455 368999999994
No 4
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=78.13 E-value=4.5 Score=40.22 Aligned_cols=124 Identities=10% Similarity=0.141 Sum_probs=74.5
Q ss_pred cceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCccc
Q 013664 225 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKF 304 (438)
Q Consensus 225 NvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~f 304 (438)
+.-||+-|+|+.||+...-|++.-+++=-.=| .-|..++-+..
T Consensus 12 ~lPK~ELH~Hl~Gsl~p~tl~~la~~~~~~lp----------~~~~~~l~~~~--------------------------- 54 (343)
T 3rys_A 12 APPVAELHLHIEGTLQPELIFALAERNGIELP----------YEDIEELREKY--------------------------- 54 (343)
T ss_dssp CCCEEECSBBGGGGCCHHHHHHHHHHTTCCCS----------CSSHHHHHTTC---------------------------
T ss_pred cCCceeeEecCccCCCHHHHHHHHHhcCCCCC----------CCCHHHHHHhc---------------------------
Confidence 46799999999999999888887776310000 01222221111
Q ss_pred cCCCCCCChhHHHHHhcccCCCC-chhHHHHHHHHHHHHhhhccceeeEEEEEe-----ecCChhH-HHHHHHH----HH
Q 013664 305 NLKYNPCGQSRLREIFLKQDNLI-QGRFLAELTKQVFSDLEASKYQMAEYRISI-----YGRKQSE-WDQLASW----IV 373 (438)
Q Consensus 305 n~kynP~G~s~LR~iFLktDN~i-~G~YlAEliK~v~~~lE~skyQ~aE~rlsI-----YGrs~~E-W~kLA~W----~~ 373 (438)
..-.-.+..++|--.-..+ .-+=|.+++++++.++.+....++|+|.+- +|.+.++ .+-+.+= -.
T Consensus 55 ----~~~~l~~fl~~f~~~~~vl~~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~ 130 (343)
T 3rys_A 55 ----EFTDLQSFLDLYYANMAVLQTEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEE 130 (343)
T ss_dssp ----CCSSHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHHHHHHTTHHH
T ss_pred ----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEecHHHhccCCCCHHHHHHHHHHHHHHHhh
Confidence 0001123334443333332 467788999999999999999999999953 4555443 2212111 12
Q ss_pred HCCCCCCCceEEEEecchh
Q 013664 374 NNELYSENVVWLIQVWISM 392 (438)
Q Consensus 374 ~~~l~S~n~rW~IQIPRl~ 392 (438)
++| -.+||++++.|..
T Consensus 131 ~~g---i~~~lI~~~~R~~ 146 (343)
T 3rys_A 131 DFG---VSTLLIAAFLRDM 146 (343)
T ss_dssp HHS---CEEEEEEEEETTS
T ss_pred cCc---eeEEEEEEeCCCC
Confidence 333 3689999999954
No 5
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=77.83 E-value=7.4 Score=39.11 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=74.5
Q ss_pred ccceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccC-c
Q 013664 224 YNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRF-D 302 (438)
Q Consensus 224 YNvrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrf-D 302 (438)
.+.-||+-|+|+.||+....|++.-+++=-.=|. .|..++-+.+.... ...+..| +
T Consensus 4 ~~lPK~ELH~HL~Gsl~p~tl~~La~~~~~~lp~----------~~~~~l~~~~~~~~-------------~~~L~~fl~ 60 (367)
T 3iar_A 4 FDKPKVELHVHLDGSIKPETILYYGRRRGIALPA----------NTAEGLLNVIGMDK-------------PLTLPDFLA 60 (367)
T ss_dssp CCSCEEECCBBGGGSCCHHHHHHHHHHHTCCCSC----------SSHHHHHHHHCCSS-------------CCCHHHHHG
T ss_pred CCCCeeEeeecccCCCCHHHHHHHHHhcCCCCCc----------CCHHHHHHHhccCC-------------CCCHHHHHH
Confidence 3577999999999999999999888765221111 12223222211100 0001111 2
Q ss_pred cccCCCCCCChhHHHHHhcccCCCCchhHHHHHHHHHHHHhhhccceeeEEEEEe-----------------ecCChhHH
Q 013664 303 KFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISI-----------------YGRKQSEW 365 (438)
Q Consensus 303 ~fn~kynP~G~s~LR~iFLktDN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsI-----------------YGrs~~EW 365 (438)
.|. .+.+.|+ . .-+=|.+++.++++++.+....++|+|.+- +|-+.++-
T Consensus 61 ~f~-----~~~~vl~----~-----~~edl~~~a~e~~ed~a~dgV~Y~Eir~~P~~~~~~~~~~~~~~~~~~gl~~~~v 126 (367)
T 3iar_A 61 KFD-----YYMPAIA----G-----CREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEV 126 (367)
T ss_dssp GGG-----GTHHHHT----T-----CHHHHHHHHHHHHHHHHTTTEEEEEEEECGGGGCSSSCSSCGGGCCCCSCCHHHH
T ss_pred HHH-----HHHHHHc----C-----CHHHHHHHHHHHHHHHHHcCCEEEEEEecHHHhhhccccccccccccCCCCHHHH
Confidence 121 0111111 0 236789999999999999999999999962 25555443
Q ss_pred HH-HHHHHH----HCCCCCCCceEEEEecchh
Q 013664 366 DQ-LASWIV----NNELYSENVVWLIQVWISM 392 (438)
Q Consensus 366 ~k-LA~W~~----~~~l~S~n~rW~IQIPRl~ 392 (438)
-+ +.+=+. +.| -.+||++++.|..
T Consensus 127 v~~v~~~~~~a~~~~g---i~~~lI~~~~R~~ 155 (367)
T 3iar_A 127 VALVGQGLQEGERDFG---VKARSILCCMRHQ 155 (367)
T ss_dssp HHHHHHHHHHHHHHHC---CEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHhcC---CeEEEEEEeCCCC
Confidence 22 322222 233 3689999999943
No 6
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=71.39 E-value=4.3 Score=40.01 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=72.9
Q ss_pred ceeecccccccccCCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccCcccCCCccccCcccc
Q 013664 226 VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFN 305 (438)
Q Consensus 226 vrKVDthvh~SacMnqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~~~LtVD~Ldvha~~~tfhrfD~fn 305 (438)
.-||+-|+|+.||+....|++.-+++=-.=| .-|..++-.... | .
T Consensus 10 lPK~ELH~Hl~Gsl~~~t~~~la~~~~~~lp----------~~~~~~l~~~~~-------------------~---~--- 54 (326)
T 3pao_A 10 LPKAELHLHLEGTLEPELLFALAERNRIALP----------WNDVETLRKAYA-------------------F---N--- 54 (326)
T ss_dssp SCEEECSBBGGGGCCHHHHHHHHHHTTCCCS----------SSSHHHHHHTCC-------------------C---S---
T ss_pred CCceEEEecccCCCCHHHHHHHHHhcCCCCC----------CCCHHHHHhhcC-------------------C---C---
Confidence 5699999999999999888877765311111 012233211100 0 0
Q ss_pred CCCCCCChhHHHHHhccc-CCCCchhHHHHHHHHHHHHhhhccceeeEEEEEe-----ecCChhHHHH-HHH----HHHH
Q 013664 306 LKYNPCGQSRLREIFLKQ-DNLIQGRFLAELTKQVFSDLEASKYQMAEYRISI-----YGRKQSEWDQ-LAS----WIVN 374 (438)
Q Consensus 306 ~kynP~G~s~LR~iFLkt-DN~i~G~YlAEliK~v~~~lE~skyQ~aE~rlsI-----YGrs~~EW~k-LA~----W~~~ 374 (438)
.-.+..++|--+ .=...-+=|.+++++++.++.+....++|+|.+- +|-+.+++-+ +.+ --.+
T Consensus 55 ------~l~~fl~~~~~~~~vl~t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~ 128 (326)
T 3pao_A 55 ------NLQEFLDLYYAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRDGEKL 128 (326)
T ss_dssp ------SHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhccCCCCHHHHHHHHHHHHHHHHhh
Confidence 001222222222 2223456788999999999999999999999963 4555555433 222 2223
Q ss_pred CCCCCCCceEEEEecchh
Q 013664 375 NELYSENVVWLIQVWISM 392 (438)
Q Consensus 375 ~~l~S~n~rW~IQIPRl~ 392 (438)
+| -.+||++++.|..
T Consensus 129 ~g---i~~~lI~~~~R~~ 143 (326)
T 3pao_A 129 LG---IRHGLILSFLRHL 143 (326)
T ss_dssp HC---CEECCEEEEETTS
T ss_pred Cc---eEEEEEEEeCCCC
Confidence 44 3579999999954
No 7
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=47.72 E-value=23 Score=32.46 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhccceeeEE------EEEeecCChhHHHH-HHHHHHHCCCC
Q 013664 333 AELTKQVFSDLEASKYQMAEY------RISIYGRKQSEWDQ-LASWIVNNELY 378 (438)
Q Consensus 333 AEliK~v~~~lE~skyQ~aE~------rlsIYGrs~~EW~k-LA~W~~~~~l~ 378 (438)
.|.++.|++.|.+.. .||| +..||=++++||.+ |.+|+.++|+.
T Consensus 71 ~e~~~~il~~L~~~g--~aew~d~~~~~~~I~Wrt~~eWa~~iy~wv~~~G~~ 121 (176)
T 3cuq_C 71 VESIQIVLEELRKKG--NLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQN 121 (176)
T ss_dssp HHHHHHHHHHHHHHT--SEEECSSSSSEEEECSSCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhcC--CceeecCCCCEEEEEeCCHHHHHHHHHHHHHhcCCc
Confidence 445666777776653 4665 58899999999975 68999999875
No 8
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=39.08 E-value=15 Score=32.76 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCC
Q 013664 240 NQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTG 281 (438)
Q Consensus 240 nqk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~ 281 (438)
.|+++|+||.+.++.+ |.+.|.+|+.+.+|++.
T Consensus 6 ~q~~il~~I~~~~~~~---------g~~~s~~eia~~lgl~~ 38 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKN---------GYPPSVREIARRFRITP 38 (196)
T ss_dssp HHHHHHHHHHHHHHHH---------SSCCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHh---------CCCCCHHHHHHHcCCCc
Confidence 4889999999988754 56689999999999863
No 9
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=36.13 E-value=25 Score=27.73 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCC
Q 013664 241 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTG 281 (438)
Q Consensus 241 qk~LL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~~~~ 281 (438)
++++|+||++.+... .|.++|.+||.+.+|++.
T Consensus 6 ~~~IL~~I~~~i~~~--------~g~~psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 6 VTKIISIVQERQNMD--------DGAPVKTRDIADAAGLSI 38 (77)
T ss_dssp HHHHHHHHHHHHHHH--------TTSCEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhc--------cCCCcCHHHHHHHHCCCH
Confidence 578999999987742 356779999999999964
No 10
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=28.93 E-value=77 Score=29.60 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhccceeeEE--------------EEEeecCChhHHHH-HHHHHHHCCCC
Q 013664 333 AELTKQVFSDLEASKYQMAEY--------------RISIYGRKQSEWDQ-LASWIVNNELY 378 (438)
Q Consensus 333 AEliK~v~~~lE~skyQ~aE~--------------rlsIYGrs~~EW~k-LA~W~~~~~l~ 378 (438)
.|-+++|++.|.+.+ .||| ++-||=|+++||.. |..|+.++|.-
T Consensus 87 ~e~~~~Il~~Lv~~g--~aew~d~~~~~~~~~~k~~~~I~Wrtp~EWa~~I~~Wv~~tG~~ 145 (202)
T 1xb4_A 87 QVFIDEIWSQMTKEG--KCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKL 145 (202)
T ss_dssp HHHHHHHHHHHHHTT--SEEEESSSSBCC--CCCCEEEECSSCHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHhcC--CeEEeCCCCcccccccCceEEEEeCCHHHHHHHHHHHHHhcCCc
Confidence 344566666665543 2333 47899999999975 68999999954
Done!