Query 013667
Match_columns 438
No_of_seqs 363 out of 2829
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0128 RNA-binding protein SA 100.0 3.9E-39 8.5E-44 315.8 18.8 409 6-438 299-714 (881)
2 KOG1915 Cell cycle control pro 100.0 7.1E-31 1.5E-35 243.2 25.6 242 3-277 57-303 (677)
3 KOG1915 Cell cycle control pro 100.0 6E-29 1.3E-33 230.5 27.0 215 2-246 305-536 (677)
4 KOG1070 rRNA processing protei 99.9 9.5E-22 2.1E-26 202.3 27.4 248 6-280 1445-1697(1710)
5 KOG0495 HAT repeat protein [RN 99.9 7.2E-21 1.6E-25 183.1 27.1 244 4-279 535-778 (913)
6 KOG1914 mRNA cleavage and poly 99.9 3.9E-20 8.4E-25 174.9 27.7 278 2-285 36-503 (656)
7 KOG2047 mRNA splicing factor [ 99.9 4.4E-20 9.6E-25 177.5 26.3 233 22-275 476-715 (835)
8 KOG1258 mRNA processing protei 99.9 9.4E-20 2E-24 175.7 26.4 274 3-284 63-396 (577)
9 KOG2047 mRNA splicing factor [ 99.8 2.3E-18 4.9E-23 165.9 25.4 257 5-267 13-298 (835)
10 KOG0495 HAT repeat protein [RN 99.8 2.6E-16 5.6E-21 152.1 25.6 243 8-282 573-815 (913)
11 KOG1070 rRNA processing protei 99.8 5.9E-17 1.3E-21 167.4 22.7 211 43-281 1444-1661(1710)
12 PF05843 Suf: Suppressor of fo 99.7 4.5E-16 9.8E-21 144.7 15.0 122 155-284 15-137 (280)
13 KOG2396 HAT (Half-A-TPR) repea 99.7 9.3E-14 2E-18 131.2 26.1 136 2-142 34-192 (568)
14 COG5107 RNA14 Pre-mRNA 3'-end 99.6 2E-14 4.4E-19 133.7 18.2 228 24-274 262-522 (660)
15 KOG2396 HAT (Half-A-TPR) repea 99.6 1.5E-13 3.2E-18 129.9 21.7 91 7-101 93-183 (568)
16 KOG1258 mRNA processing protei 99.6 7.8E-13 1.7E-17 128.3 26.4 257 3-279 273-540 (577)
17 COG5107 RNA14 Pre-mRNA 3'-end 99.6 4.3E-13 9.4E-18 125.0 23.1 270 2-286 59-365 (660)
18 KOG1914 mRNA cleavage and poly 99.6 4.7E-13 1E-17 127.4 20.0 206 47-269 10-252 (656)
19 PF05843 Suf: Suppressor of fo 99.5 1.8E-13 4E-18 127.3 14.6 97 25-122 3-99 (280)
20 KOG0128 RNA-binding protein SA 99.4 5.8E-11 1.3E-15 118.6 20.3 216 6-244 333-561 (881)
21 KOG4626 O-linked N-acetylgluco 99.4 8.7E-11 1.9E-15 113.8 20.0 216 2-245 235-450 (966)
22 TIGR00990 3a0801s09 mitochondr 99.3 1E-09 2.2E-14 114.3 27.6 239 3-245 312-570 (615)
23 TIGR00990 3a0801s09 mitochondr 99.3 7.3E-09 1.6E-13 107.9 31.1 187 35-245 306-495 (615)
24 TIGR02917 PEP_TPR_lipo putativ 99.3 6E-09 1.3E-13 112.9 30.7 197 25-245 467-663 (899)
25 PRK15174 Vi polysaccharide exp 99.2 1.4E-08 3E-13 106.0 30.4 78 167-245 269-346 (656)
26 TIGR02917 PEP_TPR_lipo putativ 99.2 1.5E-08 3.3E-13 109.7 30.7 222 3-245 483-731 (899)
27 PRK11447 cellulose synthase su 99.2 3E-08 6.4E-13 110.4 31.3 264 3-280 369-697 (1157)
28 PRK15174 Vi polysaccharide exp 99.2 4E-08 8.7E-13 102.6 30.4 215 3-245 94-312 (656)
29 KOG4626 O-linked N-acetylgluco 99.2 3.5E-09 7.6E-14 102.9 19.5 241 3-278 202-443 (966)
30 PLN03134 glycine-rich RNA-bind 99.2 1.2E-10 2.7E-15 96.5 8.1 50 389-438 32-81 (144)
31 PRK11788 tetratricopeptide rep 99.1 2.9E-07 6.4E-12 90.3 32.2 108 166-278 198-306 (389)
32 PF13429 TPR_15: Tetratricopep 99.1 9.3E-10 2E-14 103.0 12.3 233 22-281 43-275 (280)
33 KOG0126 Predicted RNA-binding 99.1 2.9E-11 6.2E-16 99.0 1.5 52 387-438 31-82 (219)
34 PRK11189 lipoprotein NlpI; Pro 99.1 2E-07 4.3E-12 87.8 27.6 211 6-245 47-264 (296)
35 TIGR02521 type_IV_pilW type IV 99.1 1.4E-07 3E-12 84.7 24.5 198 23-244 31-230 (234)
36 KOG0121 Nuclear cap-binding pr 99.0 1.6E-10 3.4E-15 89.2 3.7 50 389-438 34-83 (153)
37 PF08424 NRDE-2: NRDE-2, neces 99.0 3.3E-08 7.1E-13 93.9 19.9 114 3-121 3-130 (321)
38 PRK11447 cellulose synthase su 99.0 2.9E-07 6.3E-12 102.6 30.2 238 4-272 288-547 (1157)
39 PRK10049 pgaA outer membrane p 99.0 1.2E-06 2.6E-11 93.4 32.7 96 3-104 67-162 (765)
40 PRK11788 tetratricopeptide rep 99.0 5.5E-07 1.2E-11 88.4 27.4 235 3-246 53-311 (389)
41 PRK12370 invasion protein regu 99.0 2.2E-07 4.8E-12 95.3 25.4 213 3-245 279-501 (553)
42 PF13429 TPR_15: Tetratricopep 99.0 6.4E-09 1.4E-13 97.3 13.1 220 25-273 10-233 (280)
43 PRK09782 bacteriophage N4 rece 99.0 5.1E-07 1.1E-11 97.2 28.8 99 22-125 476-574 (987)
44 KOG0122 Translation initiation 98.9 2.2E-09 4.7E-14 92.5 6.9 51 388-438 186-236 (270)
45 KOG0113 U1 small nuclear ribon 98.9 1.9E-09 4.1E-14 95.4 5.7 49 390-438 100-148 (335)
46 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.9 4.4E-09 9.4E-14 101.9 8.4 50 389-438 267-316 (352)
47 KOG0127 Nucleolar protein fibr 98.9 3.3E-09 7.1E-14 101.1 7.0 54 385-438 286-339 (678)
48 PRK11189 lipoprotein NlpI; Pro 98.9 5.9E-07 1.3E-11 84.6 22.3 199 3-229 82-283 (296)
49 COG3063 PilF Tfp pilus assembl 98.9 1.4E-06 3.1E-11 75.6 22.3 180 34-273 46-226 (250)
50 PRK09782 bacteriophage N4 rece 98.9 5.6E-07 1.2E-11 96.9 24.5 241 3-277 494-734 (987)
51 TIGR01659 sex-lethal sex-letha 98.9 3.5E-09 7.6E-14 100.7 6.8 52 387-438 103-154 (346)
52 PF00076 RRM_1: RNA recognitio 98.8 5.6E-09 1.2E-13 75.4 4.4 44 394-438 1-44 (70)
53 PRK12370 invasion protein regu 98.8 4E-06 8.7E-11 86.1 26.9 203 20-245 253-469 (553)
54 TIGR01645 half-pint poly-U bin 98.8 9.3E-09 2E-13 103.3 6.2 49 390-438 106-154 (612)
55 KOG0125 Ataxin 2-binding prote 98.8 9.9E-09 2.1E-13 92.0 5.7 47 390-438 95-141 (376)
56 COG3063 PilF Tfp pilus assembl 98.7 2.3E-06 5E-11 74.3 19.2 118 3-126 53-172 (250)
57 PRK10049 pgaA outer membrane p 98.7 3.3E-05 7.1E-10 82.5 32.4 231 5-246 35-301 (765)
58 PF08424 NRDE-2: NRDE-2, neces 98.7 1.8E-06 4E-11 82.0 20.5 170 43-248 5-185 (321)
59 TIGR01648 hnRNP-R-Q heterogene 98.7 2.6E-08 5.6E-13 100.0 7.0 49 389-438 56-104 (578)
60 KOG1125 TPR repeat-containing 98.7 2.6E-06 5.7E-11 82.9 20.3 235 34-276 296-564 (579)
61 PF14259 RRM_6: RNA recognitio 98.7 2.4E-08 5.2E-13 72.2 4.9 44 394-438 1-44 (70)
62 TIGR02521 type_IV_pilW type IV 98.7 2.5E-05 5.4E-10 70.0 25.3 195 57-276 31-225 (234)
63 PLN02789 farnesyltranstransfer 98.7 3.6E-05 7.8E-10 72.8 26.5 201 22-245 36-249 (320)
64 KOG0547 Translocase of outer m 98.7 7.3E-06 1.6E-10 78.3 21.3 209 36-272 339-555 (606)
65 COG5191 Uncharacterized conser 98.6 9.8E-08 2.1E-12 85.8 8.3 136 2-142 34-194 (435)
66 KOG2076 RNA polymerase III tra 98.6 3.9E-06 8.4E-11 85.6 20.3 251 20-277 204-506 (895)
67 TIGR01659 sex-lethal sex-letha 98.6 3.9E-08 8.4E-13 93.6 5.8 48 391-438 193-240 (346)
68 TIGR01645 half-pint poly-U bin 98.6 4E-08 8.8E-13 98.8 6.1 48 391-438 204-251 (612)
69 KOG0144 RNA-binding protein CU 98.6 4.8E-08 1E-12 90.8 5.4 51 388-438 31-81 (510)
70 KOG0148 Apoptosis-promoting RN 98.6 5.4E-08 1.2E-12 85.1 5.1 49 390-438 61-109 (321)
71 TIGR01622 SF-CC1 splicing fact 98.6 6.6E-08 1.4E-12 97.1 6.5 51 388-438 86-136 (457)
72 KOG0117 Heterogeneous nuclear 98.6 6.8E-08 1.5E-12 90.2 5.9 50 389-438 81-130 (506)
73 KOG2076 RNA polymerase III tra 98.6 0.00014 3.1E-09 74.5 29.9 269 4-285 158-477 (895)
74 KOG1155 Anaphase-promoting com 98.6 2.4E-05 5.1E-10 74.5 21.7 113 8-126 353-465 (559)
75 KOG1129 TPR repeat-containing 98.6 6.4E-06 1.4E-10 74.9 17.2 185 37-246 270-458 (478)
76 PLN03218 maturation of RBCL 1; 98.5 0.00019 4.1E-09 78.4 31.0 265 3-277 490-777 (1060)
77 TIGR00540 hemY_coli hemY prote 98.5 0.00023 4.9E-09 70.4 29.3 246 25-279 120-395 (409)
78 KOG0547 Translocase of outer m 98.5 1.7E-05 3.8E-10 75.8 19.9 220 4-245 345-565 (606)
79 KOG1155 Anaphase-promoting com 98.5 6.4E-05 1.4E-09 71.6 23.0 215 3-246 245-495 (559)
80 PRK10747 putative protoheme IX 98.5 0.00027 5.9E-09 69.6 28.9 244 26-279 121-386 (398)
81 KOG0108 mRNA cleavage and poly 98.5 1.1E-07 2.3E-12 92.0 4.6 47 392-438 19-65 (435)
82 TIGR00540 hemY_coli hemY prote 98.5 8.1E-05 1.8E-09 73.6 25.0 218 3-246 136-399 (409)
83 TIGR01642 U2AF_lg U2 snRNP aux 98.5 2.3E-07 4.9E-12 94.6 6.9 49 390-438 294-342 (509)
84 KOG0145 RNA-binding protein EL 98.5 2.6E-07 5.5E-12 80.4 5.9 51 388-438 275-325 (360)
85 PRK10747 putative protoheme IX 98.5 5E-05 1.1E-09 74.7 22.8 212 3-245 136-389 (398)
86 PLN03218 maturation of RBCL 1; 98.5 0.00037 8E-09 76.1 31.1 268 3-278 455-743 (1060)
87 PF08311 Mad3_BUB1_I: Mad3/BUB 98.5 2.2E-06 4.7E-11 69.3 10.7 110 2-120 2-126 (126)
88 KOG0145 RNA-binding protein EL 98.5 3.8E-07 8.2E-12 79.3 6.6 51 388-438 38-88 (360)
89 COG0724 RNA-binding proteins ( 98.4 2.4E-07 5.2E-12 86.3 5.6 48 391-438 115-162 (306)
90 KOG2002 TPR-containing nuclear 98.4 0.00019 4E-09 74.3 26.1 239 3-245 470-744 (1018)
91 KOG0148 Apoptosis-promoting RN 98.4 3.2E-07 7E-12 80.4 5.4 46 387-438 160-205 (321)
92 PRK10370 formate-dependent nit 98.4 9.9E-06 2.1E-10 71.4 14.9 116 5-125 59-176 (198)
93 PLN02789 farnesyltranstransfer 98.4 7.9E-05 1.7E-09 70.5 21.8 203 4-225 56-263 (320)
94 KOG4207 Predicted splicing fac 98.4 2.4E-07 5.2E-12 77.9 4.1 49 390-438 12-60 (256)
95 KOG0124 Polypyrimidine tract-b 98.4 1.1E-07 2.4E-12 86.4 2.3 48 391-438 113-160 (544)
96 PLN03081 pentatricopeptide (PP 98.4 4.7E-05 1E-09 80.7 22.4 258 5-280 244-520 (697)
97 KOG1125 TPR repeat-containing 98.4 6.7E-05 1.4E-09 73.4 20.9 216 56-286 285-527 (579)
98 TIGR01622 SF-CC1 splicing fact 98.4 3.9E-07 8.4E-12 91.6 5.9 48 391-438 186-233 (457)
99 COG5191 Uncharacterized conser 98.4 3.9E-07 8.4E-12 82.0 4.6 83 21-104 105-187 (435)
100 KOG1173 Anaphase-promoting com 98.4 0.00016 3.6E-09 70.5 22.4 202 24-246 313-518 (611)
101 smart00362 RRM_2 RNA recogniti 98.3 7.9E-07 1.7E-11 63.9 5.1 44 393-438 1-44 (72)
102 TIGR01628 PABP-1234 polyadenyl 98.3 8.7E-07 1.9E-11 91.3 6.0 48 390-438 284-331 (562)
103 PRK14574 hmsH outer membrane p 98.3 0.0014 3E-08 69.8 29.9 66 179-245 413-478 (822)
104 KOG1126 DNA-binding cell divis 98.3 6.3E-05 1.4E-09 74.7 18.2 192 37-254 367-558 (638)
105 PRK10370 formate-dependent nit 98.3 4.1E-05 8.8E-10 67.5 15.4 82 40-122 56-139 (198)
106 KOG0144 RNA-binding protein CU 98.3 2.7E-07 5.8E-12 85.9 1.2 49 389-438 122-170 (510)
107 PRK15359 type III secretion sy 98.3 7E-05 1.5E-09 62.4 15.6 112 6-126 14-125 (144)
108 smart00360 RRM RNA recognition 98.2 1.3E-06 2.8E-11 62.5 4.3 43 396-438 1-43 (71)
109 KOG0130 RNA-binding protein RB 98.2 2.2E-06 4.7E-11 67.2 4.8 54 385-438 66-119 (170)
110 KOG1126 DNA-binding cell divis 98.2 0.00013 2.7E-09 72.6 18.1 177 45-245 409-585 (638)
111 TIGR01628 PABP-1234 polyadenyl 98.2 1.9E-06 4.2E-11 88.8 5.5 47 391-438 88-134 (562)
112 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.2 3.3E-06 7.1E-11 81.8 6.3 49 390-438 88-136 (352)
113 KOG3060 Uncharacterized conser 98.1 0.0014 3E-08 58.1 21.6 222 22-277 16-245 (289)
114 KOG3060 Uncharacterized conser 98.1 0.0013 2.8E-08 58.3 21.4 60 40-100 69-128 (289)
115 KOG0147 Transcriptional coacti 98.1 1.1E-06 2.4E-11 84.6 2.5 45 394-438 281-325 (549)
116 TIGR03302 OM_YfiO outer membra 98.1 0.001 2.2E-08 60.3 21.7 186 20-245 30-231 (235)
117 TIGR02552 LcrH_SycD type III s 98.1 0.0002 4.4E-09 58.7 15.5 114 6-125 4-117 (135)
118 KOG1840 Kinesin light chain [C 98.1 0.0044 9.5E-08 61.9 27.1 238 21-277 197-470 (508)
119 KOG0114 Predicted RNA-binding 98.1 9.2E-06 2E-10 60.7 6.1 46 390-438 17-62 (124)
120 KOG1174 Anaphase-promoting com 98.1 0.0056 1.2E-07 58.0 25.0 202 22-245 231-466 (564)
121 PLN03077 Protein ECB2; Provisi 98.1 0.00064 1.4E-08 74.0 22.3 262 3-280 407-683 (857)
122 KOG0131 Splicing factor 3b, su 98.0 2.9E-06 6.3E-11 70.2 2.8 47 392-438 97-144 (203)
123 cd00590 RRM RRM (RNA recogniti 98.0 8.8E-06 1.9E-10 58.6 5.2 45 393-438 1-45 (74)
124 KOG0146 RNA-binding protein ET 98.0 5.2E-06 1.1E-10 72.7 4.4 52 387-438 281-332 (371)
125 PF08311 Mad3_BUB1_I: Mad3/BUB 98.0 0.00013 2.8E-09 59.0 11.5 61 177-244 64-126 (126)
126 smart00777 Mad3_BUB1_I Mad3/BU 98.0 0.00011 2.4E-09 58.8 10.8 108 2-118 2-124 (125)
127 PRK15359 type III secretion sy 98.0 0.00011 2.4E-09 61.2 11.5 93 3-100 42-134 (144)
128 PRK14720 transcript cleavage f 98.0 0.0049 1.1E-07 65.4 25.6 233 19-278 27-282 (906)
129 KOG1156 N-terminal acetyltrans 98.0 0.0069 1.5E-07 60.5 24.7 231 23-274 75-324 (700)
130 PRK15179 Vi polysaccharide bio 97.9 0.0017 3.7E-08 67.8 21.8 136 53-246 82-217 (694)
131 smart00386 HAT HAT (Half-A-TPR 97.9 1.4E-05 3.1E-10 47.8 4.0 32 37-68 1-32 (33)
132 KOG0127 Nucleolar protein fibr 97.9 1.3E-05 2.8E-10 77.1 5.6 47 391-438 117-163 (678)
133 PF12569 NARP1: NMDA receptor- 97.9 0.011 2.3E-07 59.8 26.4 203 22-244 37-255 (517)
134 KOG0124 Polypyrimidine tract-b 97.9 1.2E-05 2.6E-10 73.5 4.7 46 393-438 212-257 (544)
135 PLN03077 Protein ECB2; Provisi 97.9 0.0042 9E-08 67.7 25.3 261 3-279 372-650 (857)
136 PRK14574 hmsH outer membrane p 97.9 0.0026 5.6E-08 67.8 22.7 193 22-240 33-226 (822)
137 PLN03081 pentatricopeptide (PP 97.9 0.0075 1.6E-07 64.1 26.3 261 3-278 207-486 (697)
138 KOG0146 RNA-binding protein ET 97.9 1.2E-05 2.5E-10 70.5 3.6 49 389-438 17-65 (371)
139 PRK15179 Vi polysaccharide bio 97.9 0.0007 1.5E-08 70.6 17.1 134 3-142 104-240 (694)
140 KOG2002 TPR-containing nuclear 97.9 0.0059 1.3E-07 63.6 23.2 203 33-253 352-564 (1018)
141 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.8 3.2E-05 6.9E-10 77.9 6.3 45 389-438 273-318 (481)
142 KOG4205 RNA-binding protein mu 97.8 2.4E-05 5.1E-10 72.6 4.6 49 390-438 96-144 (311)
143 cd05804 StaR_like StaR_like; a 97.8 0.0041 8.9E-08 60.1 20.6 203 19-245 2-214 (355)
144 KOG1173 Anaphase-promoting com 97.7 0.0082 1.8E-07 59.1 20.7 207 9-246 268-484 (611)
145 smart00386 HAT HAT (Half-A-TPR 97.7 7.5E-05 1.6E-09 44.5 4.3 31 198-228 2-32 (33)
146 KOG4208 Nucleolar RNA-binding 97.7 6.2E-05 1.3E-09 63.9 4.8 49 390-438 48-97 (214)
147 TIGR03302 OM_YfiO outer membra 97.7 0.0076 1.6E-07 54.6 18.9 174 3-215 51-235 (235)
148 PF13432 TPR_16: Tetratricopep 97.6 0.00031 6.7E-09 49.5 7.6 58 188-246 3-60 (65)
149 PRK14720 transcript cleavage f 97.6 0.0088 1.9E-07 63.5 20.9 161 43-225 102-265 (906)
150 KOG4661 Hsp27-ERE-TATA-binding 97.6 9.9E-05 2.2E-09 71.4 5.7 51 388-438 402-452 (940)
151 cd00189 TPR Tetratricopeptide 97.6 0.0016 3.5E-08 48.4 11.5 97 25-123 2-98 (100)
152 KOG0123 Polyadenylate-binding 97.6 6.7E-05 1.5E-09 72.1 4.4 43 393-438 78-120 (369)
153 PF13414 TPR_11: TPR repeat; P 97.6 0.00037 8E-09 49.8 7.3 68 22-89 2-69 (69)
154 PF02184 HAT: HAT (Half-A-TPR) 97.6 0.00011 2.4E-09 42.7 3.4 30 198-228 2-31 (32)
155 TIGR02552 LcrH_SycD type III s 97.6 0.0016 3.5E-08 53.3 12.0 81 165-246 34-114 (135)
156 KOG0110 RNA-binding protein (R 97.6 6E-05 1.3E-09 75.0 3.7 48 391-438 613-660 (725)
157 KOG2003 TPR repeat-containing 97.5 0.033 7.2E-07 53.4 21.5 223 30-282 497-724 (840)
158 KOG1156 N-terminal acetyltrans 97.5 0.075 1.6E-06 53.4 24.1 203 36-268 54-264 (700)
159 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.5 0.00015 3.2E-09 73.2 5.5 47 390-438 393-441 (481)
160 KOG4209 Splicing factor RNPS1, 97.5 7.9E-05 1.7E-09 66.6 3.1 50 389-438 99-148 (231)
161 KOG0116 RasGAP SH3 binding pro 97.5 0.00017 3.7E-09 69.6 5.5 51 388-438 285-335 (419)
162 PF13414 TPR_11: TPR repeat; P 97.4 0.0012 2.7E-08 46.9 8.5 62 183-245 4-66 (69)
163 cd05804 StaR_like StaR_like; a 97.4 0.098 2.1E-06 50.5 24.5 204 25-245 116-335 (355)
164 PF13432 TPR_16: Tetratricopep 97.4 0.00072 1.6E-08 47.6 7.0 61 30-91 4-64 (65)
165 PRK10153 DNA-binding transcrip 97.4 0.022 4.8E-07 57.7 20.1 179 83-279 328-510 (517)
166 KOG1840 Kinesin light chain [C 97.4 0.018 3.9E-07 57.6 19.0 164 70-246 211-396 (508)
167 PF13428 TPR_14: Tetratricopep 97.4 0.0005 1.1E-08 44.3 5.5 42 24-65 2-43 (44)
168 TIGR01648 hnRNP-R-Q heterogene 97.4 0.00024 5.2E-09 71.9 5.9 40 391-438 233-274 (578)
169 KOG0132 RNA polymerase II C-te 97.4 0.00012 2.7E-09 73.4 3.5 42 391-438 421-462 (894)
170 smart00361 RRM_1 RNA recogniti 97.4 0.00018 3.8E-09 51.7 3.4 34 405-438 2-42 (70)
171 KOG0117 Heterogeneous nuclear 97.4 0.00021 4.6E-09 67.4 4.8 51 388-438 161-213 (506)
172 KOG0226 RNA-binding proteins [ 97.4 0.00021 4.6E-09 62.5 4.3 51 388-438 187-237 (290)
173 KOG1128 Uncharacterized conser 97.3 0.014 3E-07 59.2 17.2 113 164-280 501-613 (777)
174 PF14559 TPR_19: Tetratricopep 97.3 0.00077 1.7E-08 47.9 6.4 65 34-99 2-66 (68)
175 PLN03088 SGT1, suppressor of 97.3 0.0056 1.2E-07 59.2 14.3 95 30-126 9-103 (356)
176 PF02184 HAT: HAT (Half-A-TPR) 97.3 0.00032 6.9E-09 40.8 3.1 30 38-68 2-31 (32)
177 KOG4162 Predicted calmodulin-b 97.3 0.27 5.8E-06 50.6 25.4 246 22-288 322-578 (799)
178 smart00777 Mad3_BUB1_I Mad3/BU 97.3 0.0076 1.6E-07 48.3 11.8 60 177-243 64-125 (125)
179 TIGR01642 U2AF_lg U2 snRNP aux 97.2 0.00055 1.2E-08 69.9 6.5 48 385-438 169-228 (509)
180 PLN03088 SGT1, suppressor of 97.2 0.0048 1E-07 59.7 12.7 90 3-97 20-109 (356)
181 KOG1128 Uncharacterized conser 97.2 0.012 2.7E-07 59.6 15.3 68 178-246 549-616 (777)
182 PF12569 NARP1: NMDA receptor- 97.2 0.28 6E-06 49.7 25.2 217 3-245 56-290 (517)
183 PF14559 TPR_19: Tetratricopep 97.2 0.0018 3.9E-08 45.9 7.2 52 194-246 3-54 (68)
184 KOG4212 RNA-binding protein hn 97.2 0.00048 1E-08 64.8 4.9 47 391-438 44-91 (608)
185 COG2956 Predicted N-acetylgluc 97.2 0.19 4.1E-06 46.5 25.1 219 37-282 49-277 (389)
186 PRK15363 pathogenicity island 97.2 0.014 3E-07 48.6 12.9 102 20-123 32-133 (157)
187 KOG0123 Polyadenylate-binding 97.2 0.0004 8.6E-09 66.8 4.3 48 390-438 269-316 (369)
188 PF13428 TPR_14: Tetratricopep 97.2 0.0013 2.9E-08 42.2 5.4 42 183-225 2-43 (44)
189 KOG2003 TPR repeat-containing 97.2 0.26 5.7E-06 47.5 25.5 185 37-245 470-654 (840)
190 KOG1174 Anaphase-promoting com 97.2 0.19 4E-06 48.1 21.3 236 24-272 198-459 (564)
191 KOG0153 Predicted RNA-binding 97.1 0.00069 1.5E-08 62.0 5.1 45 388-438 225-269 (377)
192 COG2956 Predicted N-acetylgluc 97.1 0.23 5E-06 46.0 27.2 229 19-271 65-300 (389)
193 KOG1548 Transcription elongati 97.1 0.0015 3.2E-08 59.9 6.9 46 390-436 133-186 (382)
194 KOG0415 Predicted peptidyl pro 97.1 0.00046 1E-08 63.2 3.6 47 392-438 240-286 (479)
195 KOG4162 Predicted calmodulin-b 97.0 0.39 8.5E-06 49.4 24.0 84 161-245 697-782 (799)
196 cd00189 TPR Tetratricopeptide 97.0 0.0063 1.4E-07 45.0 8.8 80 165-245 17-96 (100)
197 KOG0533 RRM motif-containing p 96.9 0.0011 2.4E-08 59.2 4.7 48 389-437 81-128 (243)
198 PRK02603 photosystem I assembl 96.9 0.052 1.1E-06 46.6 15.1 82 22-104 34-118 (172)
199 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.037 7.9E-07 43.7 13.1 99 25-125 4-108 (119)
200 PF13371 TPR_9: Tetratricopept 96.9 0.0073 1.6E-07 43.4 8.1 55 191-246 4-58 (73)
201 COG4235 Cytochrome c biogenesi 96.9 0.048 1E-06 50.0 14.9 86 39-125 138-225 (287)
202 PF13371 TPR_9: Tetratricopept 96.9 0.0051 1.1E-07 44.3 7.3 60 34-94 6-65 (73)
203 COG4235 Cytochrome c biogenesi 96.9 0.031 6.7E-07 51.2 13.5 113 7-125 144-259 (287)
204 KOG4210 Nuclear localization s 96.8 0.00089 1.9E-08 62.0 3.3 51 388-438 181-232 (285)
205 KOG1129 TPR repeat-containing 96.8 0.11 2.4E-06 48.0 16.5 216 32-275 232-450 (478)
206 COG4783 Putative Zn-dependent 96.8 0.041 9E-07 53.4 14.3 98 4-106 325-422 (484)
207 KOG0147 Transcriptional coacti 96.8 0.00031 6.7E-09 68.2 -0.2 52 387-438 175-226 (549)
208 KOG0624 dsRNA-activated protei 96.8 0.28 6.1E-06 45.8 18.7 259 19-284 34-334 (504)
209 KOG0109 RNA-binding protein LA 96.8 0.00092 2E-08 59.8 2.7 36 391-426 78-113 (346)
210 KOG0151 Predicted splicing reg 96.8 0.0028 6E-08 63.4 6.2 53 386-438 169-224 (877)
211 COG4783 Putative Zn-dependent 96.7 0.036 7.9E-07 53.8 13.2 113 162-278 320-432 (484)
212 PRK15363 pathogenicity island 96.7 0.026 5.7E-07 46.9 10.6 81 3-88 53-133 (157)
213 KOG0553 TPR repeat-containing 96.7 0.023 4.9E-07 51.9 10.9 99 26-126 84-182 (304)
214 PF04059 RRM_2: RNA recognitio 96.6 0.0042 9.1E-08 47.2 5.0 47 392-438 2-50 (97)
215 PF12895 Apc3: Anaphase-promot 96.6 0.013 2.9E-07 43.5 7.6 61 181-243 24-84 (84)
216 COG5010 TadD Flp pilus assembl 96.5 0.55 1.2E-05 42.2 19.9 94 178-275 130-223 (257)
217 PF09295 ChAPs: ChAPs (Chs5p-A 96.5 0.065 1.4E-06 52.1 13.6 106 164-279 185-290 (395)
218 KOG0624 dsRNA-activated protei 96.4 0.8 1.7E-05 42.9 24.7 62 183-245 190-251 (504)
219 PF14938 SNAP: Soluble NSF att 96.4 0.52 1.1E-05 44.0 18.9 123 155-280 129-260 (282)
220 PRK11906 transcriptional regul 96.4 0.24 5.2E-06 48.4 16.7 171 84-268 240-422 (458)
221 COG5010 TadD Flp pilus assembl 96.3 0.43 9.2E-06 42.9 16.6 179 42-245 52-230 (257)
222 KOG3617 WD40 and TPR repeat-co 96.3 1.6 3.5E-05 45.5 22.3 71 214-287 1077-1175(1416)
223 KOG3152 TBP-binding protein, a 96.3 0.0052 1.1E-07 54.1 4.3 38 392-429 75-112 (278)
224 PF12688 TPR_5: Tetratrico pep 96.2 0.27 5.8E-06 39.3 13.4 94 26-121 4-103 (120)
225 KOG1127 TPR repeat-containing 96.2 0.61 1.3E-05 49.5 19.0 90 33-122 12-103 (1238)
226 KOG3785 Uncharacterized conser 96.2 0.91 2E-05 42.7 18.2 60 157-217 160-219 (557)
227 KOG0110 RNA-binding protein (R 96.1 0.0064 1.4E-07 61.1 4.4 46 392-438 516-565 (725)
228 KOG0120 Splicing factor U2AF, 96.1 0.0061 1.3E-07 60.0 4.2 51 388-438 286-336 (500)
229 PF09295 ChAPs: ChAPs (Chs5p-A 96.1 0.13 2.8E-06 50.1 13.2 102 4-114 188-289 (395)
230 PF09976 TPR_21: Tetratricopep 96.1 0.39 8.6E-06 39.7 14.7 59 184-244 87-145 (145)
231 PF12895 Apc3: Anaphase-promot 95.9 0.035 7.5E-07 41.2 6.7 81 36-119 2-84 (84)
232 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.35 7.7E-06 37.9 13.1 53 192-245 12-67 (119)
233 CHL00033 ycf3 photosystem I as 95.8 0.34 7.4E-06 41.2 13.2 81 22-103 34-117 (168)
234 PRK10803 tol-pal system protei 95.7 0.18 3.9E-06 46.4 12.0 61 184-245 182-245 (263)
235 KOG0553 TPR repeat-containing 95.7 0.085 1.8E-06 48.3 9.5 89 162-253 95-183 (304)
236 PF13424 TPR_12: Tetratricopep 95.7 0.097 2.1E-06 38.0 8.2 63 182-245 5-74 (78)
237 KOG4212 RNA-binding protein hn 95.6 0.0088 1.9E-07 56.6 2.9 44 388-434 533-576 (608)
238 PRK02603 photosystem I assembl 95.5 0.74 1.6E-05 39.3 14.5 49 183-232 73-121 (172)
239 KOG4849 mRNA cleavage factor I 95.5 0.0081 1.7E-07 55.1 2.1 50 389-438 78-129 (498)
240 PRK10153 DNA-binding transcrip 95.4 0.69 1.5E-05 47.0 16.0 173 47-245 327-513 (517)
241 KOG4660 Protein Mei2, essentia 95.4 0.018 3.9E-07 56.4 4.3 46 388-438 72-117 (549)
242 PF04733 Coatomer_E: Coatomer 95.4 1.1 2.4E-05 42.0 16.0 92 182-277 167-259 (290)
243 PF14938 SNAP: Soluble NSF att 95.3 1.2 2.6E-05 41.5 16.3 124 156-281 89-223 (282)
244 PF13525 YfiO: Outer membrane 95.3 1.9 4.2E-05 38.0 19.7 65 25-92 7-76 (203)
245 KOG1127 TPR repeat-containing 95.2 3.4 7.4E-05 44.2 20.0 184 56-245 460-658 (1238)
246 PRK10803 tol-pal system protei 95.2 0.56 1.2E-05 43.2 13.3 98 24-125 143-249 (263)
247 PF09976 TPR_21: Tetratricopep 95.2 0.82 1.8E-05 37.8 13.2 21 36-56 24-44 (145)
248 PF13431 TPR_17: Tetratricopep 95.1 0.026 5.7E-07 33.8 2.9 33 205-237 1-33 (34)
249 PF03704 BTAD: Bacterial trans 95.1 0.45 9.8E-06 39.3 11.4 45 74-119 78-122 (146)
250 PF13893 RRM_5: RNA recognitio 94.7 0.034 7.4E-07 37.6 3.1 26 408-438 1-26 (56)
251 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.16 3.4E-06 49.6 8.2 68 19-87 71-141 (453)
252 PRK11906 transcriptional regul 94.6 2.1 4.6E-05 42.1 15.8 173 49-244 240-434 (458)
253 CHL00033 ycf3 photosystem I as 94.5 0.46 1E-05 40.4 10.3 44 184-228 74-117 (168)
254 PF13431 TPR_17: Tetratricopep 94.4 0.047 1E-06 32.7 2.7 26 45-70 1-26 (34)
255 PF13512 TPR_18: Tetratricopep 94.4 0.44 9.5E-06 39.0 9.1 97 26-125 13-131 (142)
256 PRK10866 outer membrane biogen 94.3 4.1 8.8E-05 37.1 21.9 66 25-93 34-104 (243)
257 PF12688 TPR_5: Tetratrico pep 94.3 2.2 4.8E-05 34.0 12.9 62 183-245 39-103 (120)
258 KOG0129 Predicted RNA-binding 93.4 0.14 3.1E-06 50.0 5.3 49 389-437 368-417 (520)
259 PLN03098 LPA1 LOW PSII ACCUMUL 93.4 0.49 1.1E-05 46.3 9.0 68 178-246 71-141 (453)
260 PF06552 TOM20_plant: Plant sp 92.5 2.5 5.3E-05 36.1 10.9 55 4-59 10-71 (186)
261 PF03704 BTAD: Bacterial trans 92.3 1.4 3.1E-05 36.3 9.4 61 184-245 64-124 (146)
262 PF07719 TPR_2: Tetratricopept 92.3 0.44 9.5E-06 28.0 4.7 31 184-215 3-33 (34)
263 PF13512 TPR_18: Tetratricopep 92.2 3.1 6.7E-05 34.1 10.8 51 72-125 24-79 (142)
264 PRK10866 outer membrane biogen 92.0 1.3 2.7E-05 40.4 9.5 61 3-67 50-111 (243)
265 PF07719 TPR_2: Tetratricopept 91.9 0.44 9.5E-06 28.0 4.4 32 25-56 3-34 (34)
266 PRK15331 chaperone protein Sic 91.5 4.7 0.0001 33.9 11.4 102 19-122 33-134 (165)
267 KOG0129 Predicted RNA-binding 91.5 0.33 7.1E-06 47.5 5.1 36 388-424 256-291 (520)
268 KOG0550 Molecular chaperone (D 91.1 13 0.00028 36.1 15.1 99 180-285 247-349 (486)
269 PF06552 TOM20_plant: Plant sp 91.1 2.7 5.9E-05 35.8 9.7 83 39-121 7-101 (186)
270 KOG1457 RNA binding protein (c 91.1 0.58 1.3E-05 40.7 5.7 50 389-438 32-82 (284)
271 KOG3824 Huntingtin interacting 91.1 0.49 1.1E-05 43.5 5.5 61 34-95 127-187 (472)
272 KOG0548 Molecular co-chaperone 90.5 8.9 0.00019 38.3 13.9 91 33-125 368-458 (539)
273 KOG0543 FKBP-type peptidyl-pro 90.5 11 0.00024 36.3 14.2 81 165-246 274-355 (397)
274 KOG0550 Molecular chaperone (D 90.4 18 0.00038 35.2 15.2 67 179-246 284-350 (486)
275 KOG1995 Conserved Zn-finger pr 90.3 0.24 5.1E-06 46.2 2.9 49 389-437 64-120 (351)
276 PF13181 TPR_8: Tetratricopept 90.0 0.91 2E-05 26.6 4.6 31 184-215 3-33 (34)
277 KOG2376 Signal recognition par 90.0 24 0.00052 35.9 22.5 110 164-274 357-478 (652)
278 KOG4206 Spliceosomal protein s 90.0 0.52 1.1E-05 41.2 4.6 45 389-438 144-188 (221)
279 KOG0548 Molecular co-chaperone 89.7 5.6 0.00012 39.6 11.8 111 4-120 377-487 (539)
280 KOG1457 RNA binding protein (c 89.6 0.31 6.7E-06 42.4 2.9 34 391-424 210-243 (284)
281 PF08777 RRM_3: RNA binding mo 89.6 0.32 6.9E-06 37.8 2.7 36 391-426 1-36 (105)
282 KOG4211 Splicing factor hnRNP- 89.0 1.1 2.3E-05 43.8 6.3 48 390-438 102-150 (510)
283 PRK15331 chaperone protein Sic 88.9 13 0.00028 31.3 14.8 86 193-282 48-133 (165)
284 PF13174 TPR_6: Tetratricopept 88.7 0.97 2.1E-05 26.1 3.9 28 188-216 6-33 (33)
285 PF13424 TPR_12: Tetratricopep 88.5 2.5 5.5E-05 30.3 6.9 72 213-284 1-73 (78)
286 PF04733 Coatomer_E: Coatomer 88.4 21 0.00046 33.4 14.6 120 5-128 115-236 (290)
287 PF00515 TPR_1: Tetratricopept 88.2 0.99 2.1E-05 26.5 3.7 31 25-55 3-33 (34)
288 COG3071 HemY Uncharacterized e 88.0 26 0.00057 33.7 27.0 215 25-246 120-357 (400)
289 KOG3824 Huntingtin interacting 87.8 1.6 3.4E-05 40.3 6.3 60 194-256 128-187 (472)
290 COG4785 NlpI Lipoprotein NlpI, 87.7 19 0.00042 31.8 15.4 47 5-55 85-131 (297)
291 PF00515 TPR_1: Tetratricopept 86.7 2.4 5.2E-05 24.8 4.9 31 184-215 3-33 (34)
292 KOG4234 TPR repeat-containing 86.7 6.3 0.00014 34.3 8.9 89 33-124 105-199 (271)
293 KOG4555 TPR repeat-containing 86.4 16 0.00035 29.6 11.7 89 35-125 55-147 (175)
294 KOG1855 Predicted RNA-binding 86.3 0.99 2.2E-05 43.2 4.3 37 390-426 230-266 (484)
295 PF13181 TPR_8: Tetratricopept 86.0 1.4 3.1E-05 25.8 3.6 32 24-55 2-33 (34)
296 PF14605 Nup35_RRM_2: Nup53/35 85.9 0.83 1.8E-05 30.5 2.7 32 392-424 2-33 (53)
297 COG1729 Uncharacterized protei 85.6 9 0.0002 34.9 9.9 96 25-125 144-247 (262)
298 PF04184 ST7: ST7 protein; In 85.5 15 0.00033 36.5 12.0 138 73-244 183-322 (539)
299 KOG3081 Vesicle coat complex C 85.5 29 0.00063 31.7 20.0 60 59-118 74-133 (299)
300 PF13525 YfiO: Outer membrane 85.5 6.7 0.00014 34.5 9.1 55 3-58 23-77 (203)
301 PF13174 TPR_6: Tetratricopept 84.7 1.6 3.5E-05 25.1 3.4 21 35-55 12-32 (33)
302 TIGR02996 rpt_mate_G_obs repea 84.0 2.2 4.7E-05 26.7 3.6 27 45-71 4-30 (42)
303 KOG4555 TPR repeat-containing 83.7 9.5 0.00021 30.8 8.0 75 198-274 58-135 (175)
304 KOG0543 FKBP-type peptidyl-pro 83.4 16 0.00035 35.2 11.0 96 25-121 259-354 (397)
305 KOG0112 Large RNA-binding prot 82.8 0.59 1.3E-05 48.9 1.3 44 383-426 364-407 (975)
306 KOG0115 RNA-binding protein p5 82.6 1.1 2.4E-05 40.0 2.7 44 392-436 32-75 (275)
307 KOG1190 Polypyrimidine tract-b 82.6 2.7 5.9E-05 40.1 5.4 36 391-426 28-63 (492)
308 PF15297 CKAP2_C: Cytoskeleton 82.2 21 0.00045 33.9 11.0 50 196-245 116-168 (353)
309 KOG0105 Alternative splicing f 82.2 2.6 5.6E-05 35.7 4.6 38 389-426 113-150 (241)
310 KOG1166 Mitotic checkpoint ser 81.9 19 0.0004 39.5 12.0 71 198-270 93-165 (974)
311 COG1729 Uncharacterized protei 81.7 18 0.00039 33.0 10.2 51 194-245 190-243 (262)
312 PF10602 RPN7: 26S proteasome 81.2 7.4 0.00016 33.4 7.3 63 182-245 36-101 (177)
313 PF15297 CKAP2_C: Cytoskeleton 80.7 17 0.00037 34.5 9.9 56 73-129 118-176 (353)
314 PF08675 RNA_bind: RNA binding 80.6 3.7 8E-05 30.1 4.3 33 393-426 10-42 (87)
315 TIGR02996 rpt_mate_G_obs repea 79.8 4.4 9.5E-05 25.4 3.9 33 6-42 3-35 (42)
316 PF13176 TPR_7: Tetratricopept 77.3 4.1 8.9E-05 24.4 3.3 26 26-51 2-27 (36)
317 PF13176 TPR_7: Tetratricopept 76.6 5.6 0.00012 23.8 3.8 26 220-245 2-27 (36)
318 KOG0530 Protein farnesyltransf 76.6 62 0.0013 29.7 14.1 40 61-100 46-85 (318)
319 KOG1972 Uncharacterized conser 75.3 4.9 0.00011 42.0 5.1 51 52-103 831-881 (913)
320 KOG4642 Chaperone-dependent E3 75.2 19 0.00041 32.4 7.9 81 38-120 25-105 (284)
321 COG3071 HemY Uncharacterized e 74.2 88 0.0019 30.3 23.3 128 92-246 263-390 (400)
322 smart00028 TPR Tetratricopepti 73.8 6.6 0.00014 21.3 3.7 31 25-55 3-33 (34)
323 PRK04841 transcriptional regul 73.6 1.5E+02 0.0032 32.7 25.9 116 4-121 471-601 (903)
324 PF10602 RPN7: 26S proteasome 73.2 16 0.00036 31.3 7.3 68 218-285 37-104 (177)
325 PRK04841 transcriptional regul 72.1 1.6E+02 0.0035 32.4 26.1 199 34-245 420-640 (903)
326 KOG4454 RNA binding protein (R 69.3 1.5 3.3E-05 38.1 -0.0 49 389-438 78-130 (267)
327 KOG2376 Signal recognition par 69.0 1.4E+02 0.0031 30.6 20.8 65 181-246 174-253 (652)
328 PF10300 DUF3808: Protein of u 68.3 1.3E+02 0.0027 30.5 13.4 71 184-258 268-343 (468)
329 COG0457 NrfG FOG: TPR repeat [ 68.0 73 0.0016 26.8 23.4 196 27-245 63-264 (291)
330 COG4105 ComL DNA uptake lipopr 67.2 1E+02 0.0022 28.1 20.7 76 24-102 35-116 (254)
331 PF02259 FAT: FAT domain; Int 67.0 1.2E+02 0.0025 28.8 15.9 46 183-229 253-304 (352)
332 KOG0529 Protein geranylgeranyl 66.8 1.3E+02 0.0029 29.4 13.0 171 41-231 47-242 (421)
333 PF04781 DUF627: Protein of un 66.3 61 0.0013 25.3 8.6 84 194-284 8-105 (111)
334 KOG1166 Mitotic checkpoint ser 66.3 1.5E+02 0.0032 32.8 13.9 98 22-123 33-144 (974)
335 KOG0529 Protein geranylgeranyl 64.0 89 0.0019 30.5 10.5 93 43-135 95-193 (421)
336 KOG2314 Translation initiation 62.9 11 0.00025 37.6 4.5 49 389-438 56-110 (698)
337 KOG3785 Uncharacterized conser 62.2 1.3E+02 0.0027 29.0 10.9 61 181-244 58-118 (557)
338 KOG4642 Chaperone-dependent E3 62.0 73 0.0016 28.8 8.8 81 164-245 26-106 (284)
339 KOG4234 TPR repeat-containing 61.8 1.1E+02 0.0025 26.9 12.3 40 178-218 164-203 (271)
340 PF08640 U3_assoc_6: U3 small 61.1 11 0.00023 27.9 3.1 30 2-35 26-55 (83)
341 COG4700 Uncharacterized protei 60.9 1.1E+02 0.0024 26.6 18.7 133 106-264 102-241 (251)
342 KOG4210 Nuclear localization s 59.3 4.7 0.0001 37.5 1.2 50 389-438 86-135 (285)
343 KOG1365 RNA-binding protein Fu 58.6 18 0.0004 34.4 4.8 47 391-438 280-329 (508)
344 KOG1365 RNA-binding protein Fu 58.2 17 0.00037 34.6 4.6 46 392-438 162-211 (508)
345 PF10300 DUF3808: Protein of u 56.6 2.3E+02 0.0049 28.7 19.2 85 36-121 201-295 (468)
346 PRK10941 hypothetical protein; 55.5 52 0.0011 30.4 7.3 54 37-91 195-248 (269)
347 KOG2253 U1 snRNP complex, subu 54.5 8.3 0.00018 39.4 2.1 34 390-423 39-72 (668)
348 KOG1190 Polypyrimidine tract-b 52.7 20 0.00044 34.4 4.2 38 391-428 297-335 (492)
349 COG3629 DnrI DNA-binding trans 52.7 84 0.0018 29.2 8.1 59 186-245 157-215 (280)
350 COG3629 DnrI DNA-binding trans 52.6 2E+02 0.0043 26.8 10.8 56 29-85 159-214 (280)
351 PF11608 Limkain-b1: Limkain b 52.4 16 0.00036 26.9 2.8 30 392-421 3-37 (90)
352 KOG3617 WD40 and TPR repeat-co 52.0 3.4E+02 0.0075 29.4 20.9 61 183-244 913-994 (1416)
353 KOG1308 Hsp70-interacting prot 51.7 11 0.00023 35.7 2.2 87 35-125 126-214 (377)
354 KOG4648 Uncharacterized conser 49.0 64 0.0014 30.7 6.7 89 35-125 109-197 (536)
355 KOG1586 Protein required for f 47.7 2.2E+02 0.0047 25.8 15.8 119 158-280 90-221 (288)
356 PF10579 Rapsyn_N: Rapsyn N-te 47.5 1E+02 0.0022 22.5 6.2 48 198-245 21-68 (80)
357 COG4976 Predicted methyltransf 46.5 31 0.00067 30.9 4.1 58 33-91 5-62 (287)
358 KOG0106 Alternative splicing f 45.3 14 0.00031 32.6 1.9 34 388-421 96-129 (216)
359 COG3947 Response regulator con 44.9 61 0.0013 30.2 5.8 35 73-107 294-328 (361)
360 PF14853 Fis1_TPR_C: Fis1 C-te 43.8 80 0.0017 21.0 4.9 25 193-218 12-36 (53)
361 KOG3081 Vesicle coat complex C 42.9 2.3E+02 0.0049 26.2 9.0 121 4-125 152-274 (299)
362 KOG2690 Uncharacterized conser 42.7 43 0.00092 31.2 4.5 74 44-122 165-238 (331)
363 COG4976 Predicted methyltransf 42.4 41 0.00088 30.1 4.2 53 193-246 6-58 (287)
364 PF08631 SPO22: Meiosis protei 42.1 2.8E+02 0.0061 25.6 18.0 79 41-120 105-184 (278)
365 PF12854 PPR_1: PPR repeat 42.0 58 0.0012 19.1 3.7 24 184-208 9-32 (34)
366 PF13041 PPR_2: PPR repeat fam 40.8 77 0.0017 20.2 4.6 28 219-246 5-32 (50)
367 KOG4008 rRNA processing protei 40.4 19 0.00041 31.9 1.9 33 389-421 38-70 (261)
368 TIGR03504 FimV_Cterm FimV C-te 39.9 62 0.0013 20.6 3.7 23 188-211 5-27 (44)
369 TIGR00756 PPR pentatricopeptid 39.8 69 0.0015 17.9 4.4 26 220-245 3-28 (35)
370 KOG4307 RNA binding protein RB 39.6 42 0.00091 34.8 4.3 46 390-436 865-912 (944)
371 COG4499 Predicted membrane pro 39.4 3.7E+02 0.008 26.1 11.3 80 201-292 301-386 (434)
372 KOG1308 Hsp70-interacting prot 39.4 28 0.0006 33.0 2.8 80 164-246 130-211 (377)
373 PF13374 TPR_10: Tetratricopep 37.2 90 0.002 18.4 4.4 27 220-246 5-31 (42)
374 PF13041 PPR_2: PPR repeat fam 36.8 1E+02 0.0022 19.6 4.7 32 184-216 5-38 (50)
375 KOG2053 Mitochondrial inherita 36.5 6E+02 0.013 27.7 27.6 214 7-246 31-255 (932)
376 KOG0890 Protein kinase of the 35.2 9.4E+02 0.02 29.6 21.7 72 182-257 1889-1965(2382)
377 PF15513 DUF4651: Domain of un 32.9 48 0.001 22.8 2.5 17 406-422 9-25 (62)
378 cd02684 MIT_2 MIT: domain cont 32.7 1.9E+02 0.0041 20.8 6.7 16 230-245 19-34 (75)
379 PF01535 PPR: PPR repeat; Int 32.4 86 0.0019 17.0 3.4 26 220-245 3-28 (31)
380 KOG4307 RNA binding protein RB 32.1 57 0.0012 33.9 3.9 49 389-438 432-481 (944)
381 KOG1130 Predicted G-alpha GTPa 31.9 5.2E+02 0.011 25.6 13.6 52 35-90 29-80 (639)
382 KOG2891 Surface glycoprotein [ 31.0 52 0.0011 29.9 3.1 23 403-425 173-195 (445)
383 KOG2114 Vacuolar assembly/sort 30.6 4E+02 0.0087 28.8 9.7 51 161-212 347-397 (933)
384 KOG3364 Membrane protein invol 30.0 2.2E+02 0.0047 23.4 6.1 68 185-254 37-106 (149)
385 KOG0687 26S proteasome regulat 29.9 5E+02 0.011 24.8 10.6 67 218-284 105-171 (393)
386 PF00244 14-3-3: 14-3-3 protei 29.9 4.2E+02 0.009 23.9 17.0 56 157-212 142-198 (236)
387 COG0030 KsgA Dimethyladenosine 29.0 81 0.0018 28.9 4.1 35 392-426 96-130 (259)
388 smart00101 14_3_3 14-3-3 homol 28.9 4.5E+02 0.0097 23.9 11.9 56 157-212 144-200 (244)
389 PF05172 Nup35_RRM: Nup53/35/4 28.6 53 0.0011 25.2 2.4 32 390-422 5-36 (100)
390 COG0457 NrfG FOG: TPR repeat [ 28.1 3.5E+02 0.0075 22.4 20.7 171 22-215 94-268 (291)
391 PF12583 TPPII_N: Tripeptidyl 27.4 89 0.0019 25.2 3.5 32 198-229 91-122 (139)
392 PF09707 Cas_Cas2CT1978: CRISP 27.3 82 0.0018 23.4 3.1 42 393-437 27-68 (86)
393 COG0724 RNA-binding proteins ( 26.8 98 0.0021 27.7 4.5 39 389-427 223-261 (306)
394 KOG4648 Uncharacterized conser 26.8 5.8E+02 0.013 24.6 9.2 33 193-226 176-208 (536)
395 PRK11558 putative ssRNA endonu 26.6 71 0.0015 24.3 2.7 42 393-437 29-70 (97)
396 PRK14136 recX recombination re 26.2 5.6E+02 0.012 24.2 15.1 138 77-244 161-303 (309)
397 COG5175 MOT2 Transcriptional r 25.4 58 0.0012 30.6 2.5 35 390-424 113-153 (480)
398 KOG1456 Heterogeneous nuclear 25.0 1.6E+02 0.0035 28.3 5.2 52 382-438 278-330 (494)
399 KOG0376 Serine-threonine phosp 24.9 1.7E+02 0.0037 29.2 5.6 83 162-245 18-100 (476)
400 KOG0112 Large RNA-binding prot 24.7 86 0.0019 33.7 3.8 36 388-423 452-487 (975)
401 COG4700 Uncharacterized protei 24.7 4.8E+02 0.01 22.9 16.2 45 77-122 108-153 (251)
402 KOG0890 Protein kinase of the 24.2 1.4E+03 0.031 28.2 24.1 215 19-245 1666-1918(2382)
403 PF13929 mRNA_stabil: mRNA sta 23.9 3.1E+02 0.0067 25.6 6.9 60 184-244 204-265 (292)
404 PF12583 TPPII_N: Tripeptidyl 23.5 1.8E+02 0.0039 23.6 4.5 45 24-68 70-121 (139)
405 PF04910 Tcf25: Transcriptiona 23.4 6.8E+02 0.015 24.2 12.5 45 38-87 25-69 (360)
406 KOG3364 Membrane protein invol 23.4 2.5E+02 0.0055 23.0 5.4 54 164-218 51-106 (149)
407 cd02683 MIT_1 MIT: domain cont 23.4 2.6E+02 0.0056 20.2 5.1 17 229-245 18-34 (77)
408 KOG2690 Uncharacterized conser 23.2 1.8E+02 0.0039 27.3 5.2 22 43-64 194-215 (331)
409 PRK15490 Vi polysaccharide bio 23.2 4.8E+02 0.01 27.1 8.7 51 188-241 48-98 (578)
410 PF09986 DUF2225: Uncharacteri 23.0 5.3E+02 0.012 22.8 12.5 63 183-246 119-194 (214)
411 PF07721 TPR_4: Tetratricopept 22.9 1.4E+02 0.003 16.0 3.2 20 187-207 6-25 (26)
412 COG4105 ComL DNA uptake lipopr 22.9 5.9E+02 0.013 23.3 17.8 88 3-91 52-149 (254)
413 KOG0739 AAA+-type ATPase [Post 22.6 5.8E+02 0.012 24.2 8.2 16 230-245 23-38 (439)
414 cd02677 MIT_SNX15 MIT: domain 22.6 2.8E+02 0.006 19.9 5.1 15 231-245 20-34 (75)
415 COG3118 Thioredoxin domain-con 22.3 3.8E+02 0.0083 25.1 7.1 82 195-279 147-228 (304)
416 KOG2610 Uncharacterized conser 22.1 7.2E+02 0.016 24.0 13.7 88 36-125 116-207 (491)
417 PF08780 NTase_sub_bind: Nucle 22.0 4.1E+02 0.0089 21.1 7.0 60 185-244 44-108 (124)
418 KOG1972 Uncharacterized conser 21.2 2.1E+02 0.0045 30.7 5.7 48 22-69 835-882 (913)
419 KOG0530 Protein farnesyltransf 21.1 6.7E+02 0.015 23.2 20.8 100 22-122 41-142 (318)
420 PF11846 DUF3366: Domain of un 21.0 2.7E+02 0.0059 23.9 5.9 54 41-96 129-183 (193)
421 COG1747 Uncharacterized N-term 20.8 9.2E+02 0.02 24.7 10.9 97 185-284 102-199 (711)
422 PF11846 DUF3366: Domain of un 20.7 3.6E+02 0.0078 23.1 6.6 44 201-245 129-172 (193)
423 KOG3077 Uncharacterized conser 20.2 6.6E+02 0.014 23.0 8.1 68 198-269 175-253 (260)
No 1
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.9e-39 Score=315.77 Aligned_cols=409 Identities=29% Similarity=0.467 Sum_probs=295.6
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
..||..++..+. .++.|+.|+++|.+.|++-+++.+|||++..++.+.++|+.|..|+....+-+..+..++-||+
T Consensus 299 ~~~e~~~q~~~~----~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~ 374 (881)
T KOG0128|consen 299 FKFERLVQKEPI----KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV 374 (881)
T ss_pred HHHHHHhhhhHH----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhh
Confidence 456666666654 7889999999999999999999999999999999999999999999988888888999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHH
Q 013667 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~ 165 (438)
++|||.+.||..|+..|++.......|...|+++++.++. ++..+.-+.++.... ....+++.+|.+|.
T Consensus 375 R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-------l~~~~~~~rr~~~~~----~~s~~~s~lr~~F~ 443 (881)
T KOG0128|consen 375 RSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-------LHNDYLAYRRRCTNI----IDSQDYSSLRAAFN 443 (881)
T ss_pred cCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-------HHHHHHHHHHhhccc----chhhhHHHHHHHHH
Confidence 9999999999999999999888888899999998875443 222222222222211 12367889999999
Q ss_pred HHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 166 RASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 166 ~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~-~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
+|+.+|...+.. .++.+.+...|+++|..++++++.||.||+.++........ .|+.|+++|..+|+...||.++++|
T Consensus 444 ~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~a 523 (881)
T KOG0128|consen 444 HAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKA 523 (881)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHH
Confidence 999999999887 88899999999999999999999999999999998665565 9999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhHHHHHHHHHHhhhccCCCchhhhhhhhccccccccCCCCC
Q 013667 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSN 323 (438)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~ 323 (438)
+.....++....+++.|..||+++|+++.+..|..+++++.......+.+...+...+.+ ..++..+.+++....
T Consensus 524 y~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~-----~~ke~~~~~~k~~~~ 598 (881)
T KOG0128|consen 524 YSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVYPEQ-----QKKEIQRRQFKGEGN 598 (881)
T ss_pred HhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCCcch-----hhHHhhHHHhhcccc
Confidence 986544444568999999999999999999999999999887666555555544322211 111111111221111
Q ss_pred CCccCCchhhcccCCC----CCCccchhhHHhhhhhhhhhccccccccccCCCCCCC-CcCCCCCCCCCCCCCceEEEeC
Q 013667 324 ISYEQSPAKRQKHAPQ----KPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP-IKDAVPGRTKGFTDECTAFLSN 398 (438)
Q Consensus 324 ~~~~~~~~K~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~n 398 (438)
...-.-|.++.|...+ .....++. .++.+..+.|..+......++..++ +.......++..++.+++||+|
T Consensus 599 vekv~~p~~g~k~h~q~~~~~~~s~~~~----~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsn 674 (881)
T KOG0128|consen 599 VEKVNGPKRGFKAHEQPQQQKVQSKHGS----AESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSN 674 (881)
T ss_pred cccccCccccccccccchhhhhhccccc----hhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhh
Confidence 1111112222221111 00001111 0111111111111111111111111 1122333334446778999999
Q ss_pred CCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 399 INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 399 l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
|+..+.+.+|...|..+|.+..+++.....+|+.||.|||
T Consensus 675 l~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~ 714 (881)
T KOG0128|consen 675 LSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYV 714 (881)
T ss_pred cchhhcCchhhhhcCccchhhhHHHHHHhhccccccceee
Confidence 9999999999999999999999988866678999999986
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.1e-31 Score=243.22 Aligned_cols=242 Identities=23% Similarity=0.412 Sum_probs=213.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
..|..||..|.++.. +.+.|+.|+.||...+++.+|+.||||||.....+..||+.|+.+..++ +..++++.|++
T Consensus 57 RkRkefEd~irrnR~----~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~d 131 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRL----NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWD 131 (677)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHH
Confidence 579999999999987 8899999999999999999999999999999999999999999987754 67889999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (438)
|||...|....+|..|+. +|...++...+++||+|-+...|+ .|..|+.+.+.| .++.++
T Consensus 132 RAvt~lPRVdqlWyKY~y-mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----------------keiera 193 (677)
T KOG1915|consen 132 RAVTILPRVDQLWYKYIY-MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----------------KEIERA 193 (677)
T ss_pred HHHHhcchHHHHHHHHHH-HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----------------hHHHHH
Confidence 999999999999999997 666689999999999999988776 334455544433 456677
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH---HHHHHHHHHHhcccHHHHH
Q 013667 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISMEIELDHINEAR 237 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~---~W~~y~~~e~~~g~~~~ar 237 (438)
|.+|++..- +.+.+.-|+.|++||.++| ++..||.+|++|+...++... +..+++.||..+..+++||
T Consensus 194 R~IYerfV~--------~HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 194 RSIYERFVL--------VHPKVSNWIKYARFEEKHG-NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHhe--------ecccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776543 3466789999999999999 999999999999999887653 8999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013667 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
.||+-||. .++.+..+.|+..|+.||..||+...+++++
T Consensus 265 ~iykyAld-~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 265 FIYKYALD-HIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHH-hcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 99999998 4688888999999999999999999999887
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=6e-29 Score=230.49 Aligned_cols=215 Identities=24% Similarity=0.445 Sum_probs=161.4
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------HHHHHHHHHHHHhhcc
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------SDLWLDYTQYLDKTLK 72 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---------~~lW~~Y~~~l~~~~~ 72 (438)
.+.|..||.-|+.+|+ +++.|..|+.++...|+.++|+.+|||||...|.- .-||++|+-|.+-..+
T Consensus 305 ~KRk~qYE~~v~~np~----nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY----NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred hhhhhHHHHHHHhCCC----CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999998 99999999999999999999999999999988753 3599999999887778
Q ss_pred chhHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhh
Q 013667 73 VGNVVRDVYSRATKNCPWV----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRIL 146 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~----~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~ 146 (438)
+.+..++||+++|..+|+. ..||++|+.+ +..+.+...++.++-.|+-..|. .+..|+++.+..
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f-eIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL--------- 450 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF-EIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQL--------- 450 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-HHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH---------
Confidence 8899999999999999984 4899999995 55578889999999999954443 445566555432
Q ss_pred cccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-chHH-HHHHHH
Q 013667 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLE-AWQSYI 224 (438)
Q Consensus 147 ~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-~~~~-~W~~y~ 224 (438)
.+++++|.+|++.+. -.|..+..|..||.+|..+| +.++||.||+-|++... +.++ +|..||
T Consensus 451 --------~efDRcRkLYEkfle-------~~Pe~c~~W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 451 --------REFDRCRKLYEKFLE-------FSPENCYAWSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred --------hhHHHHHHHHHHHHh-------cChHhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 223333333333333 25556667777777777777 67777777777776533 2232 677777
Q ss_pred HHHHhcccHHHHHHHHHHHHhc
Q 013667 225 SMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+||...|.+++||++|++.|.+
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh
Confidence 7777777777777777776654
No 4
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.90 E-value=9.5e-22 Score=202.26 Aligned_cols=248 Identities=18% Similarity=0.313 Sum_probs=203.4
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCC----HHHHHHHHHHHHhhccchhHHHHH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVS----SDLWLDYTQYLDKTLKVGNVVRDV 80 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~-p~~----~~lW~~Y~~~l~~~~~~~~~~~~i 80 (438)
+.||..|...|. .--.|+.|+.+..+.++++.|+.++||||... +.- -.+|+.|++++...+ .-+.+..+
T Consensus 1445 eDferlvrssPN----SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN----SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKV 1519 (1710)
T ss_pred HHHHHHHhcCCC----cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHH
Confidence 568899988886 33479999999999999999999999999864 433 369999999887664 45668999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHH
Q 013667 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (438)
Q Consensus 81 ~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (438)
|+||++.|- ...++...+.+++. ...++++.++|++.+..- -....+|..|.++|-|+- +-+..
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k-~ek~~~A~ell~~m~KKF----~q~~~vW~~y~~fLl~~n----------e~~aa 1583 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEK-SEKNDEADELLRLMLKKF----GQTRKVWIMYADFLLRQN----------EAEAA 1583 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHh----cchhhHHHHHHHHHhccc----------HHHHH
Confidence 999999885 34677777777776 456678888888877421 123567877877776542 34566
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHH
Q 013667 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~ 240 (438)
|.++.+|+.++.+ ..+.++...+|++|.+.| |.+++|.+|+..+..+|...++|.-|+++|+.+|+.+.+|.+|
T Consensus 1584 ~~lL~rAL~~lPk-----~eHv~~IskfAqLEFk~G-DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1584 RELLKRALKSLPK-----QEHVEFISKFAQLEFKYG-DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHhhcch-----hhhHHHHHHHHHHHhhcC-CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 7888888888743 346789999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013667 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
+|++...+.......++..|++||..+||...++.+=.++
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 9999987777777889999999999999999887644443
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=7.2e-21 Score=183.14 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=203.8
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+|..|-.+|+-+|. .-.+|..-+.+|+.+|..+....++++|+..+|..+.+|++|+.--+.. ++...++.++.+
T Consensus 535 arAVya~alqvfp~----k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il~~ 609 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC----KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHhhccc----hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 68888899988886 5668999999999999999999999999999999999999999866654 566679999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHH
Q 013667 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (438)
|+...|+|.+||...+. +|..+..++.++.+|.+|....... .+|..++ .+......
T Consensus 610 af~~~pnseeiwlaavK-le~en~e~eraR~llakar~~sgTe-----Rv~mKs~-----------------~~er~ld~ 666 (913)
T KOG0495|consen 610 AFEANPNSEEIWLAAVK-LEFENDELERARDLLAKARSISGTE-----RVWMKSA-----------------NLERYLDN 666 (913)
T ss_pred HHHhCCCcHHHHHHHHH-HhhccccHHHHHHHHHHHhccCCcc-----hhhHHHh-----------------HHHHHhhh
Confidence 99999999999999877 7776778899999999988754431 3343332 22233455
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
+++|+.++...++..+....+|+...+++...+ +++.||..|..+++.+|...-+|+..+++|...|++-+||.|++++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 677777777777777888899999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
.-++ +....+|..-+++|.+.|+.+..+..+.+
T Consensus 746 rlkN---Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 746 RLKN---PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HhcC---CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8753 44568999999999999999887755443
No 6
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.88 E-value=3.9e-20 Score=174.92 Aligned_cols=278 Identities=17% Similarity=0.250 Sum_probs=202.6
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc----hhHH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV----GNVV 77 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~----~~~~ 77 (438)
.+.|+.||+.+..+|. ...+|..||..|....+++.+..+|.|||... ++.+||.-|+.|+.+..+. .+.+
T Consensus 36 ~~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 4689999999999997 45689999999999999999999999999875 6799999999999866432 2456
Q ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHHHH--------ccCCHHHHHHHHHHHHhCCcccH----HHHHHHHHHHHHH-H
Q 013667 78 RDVYSRATKNC---PWVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFSTF----EEYLDLFLTRIDG-L 141 (438)
Q Consensus 78 ~~i~erAl~~~---p~~~~lW~~y~~~le~--------~~~~~~~~~~i~~ral~~~~~~~----~~~~~~~~~~~~~-l 141 (438)
...|+-|+..| +.|..||..|+.+++. .++.++.++.+|+||+..+..+. .+|..+.. -++. +
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~-~IN~~t 189 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQ-EINIIT 189 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH-HHHHHH
Confidence 77888888877 5788999999998874 12356889999999999877642 23322111 1110 0
Q ss_pred HHhhhccc--------------------------c---------------cchhhcH-----------------------
Q 013667 142 RRRILFSG--------------------------E---------------VEGVLDY----------------------- 157 (438)
Q Consensus 142 ~rr~~~~~--------------------------~---------------~~~~~~~----------------------- 157 (438)
-|++.... . +-.+++|
T Consensus 190 arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yaye 269 (656)
T KOG1914|consen 190 ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYE 269 (656)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHH
Confidence 01000000 0 0000000
Q ss_pred ----------------------------------------HHHHHHH---------------------------------
Q 013667 158 ----------------------------------------SLIRETF--------------------------------- 164 (438)
Q Consensus 158 ----------------------------------------~~~r~~f--------------------------------- 164 (438)
..++.+|
T Consensus 270 Q~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~ 349 (656)
T KOG1914|consen 270 QCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKK 349 (656)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhh
Confidence 0011111
Q ss_pred ---------------------------------HHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013667 165 ---------------------------------QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 165 ---------------------------------~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
.-|+.++.++-+..-+.++++...|-+|....+|...|-.||+.+|+
T Consensus 350 ~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 350 VHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLK 429 (656)
T ss_pred hHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 11233333332222233567778888888877799999999999999
Q ss_pred hccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhHH
Q 013667 212 ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (438)
Q Consensus 212 ~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l~ 285 (438)
.+++...+-+.|++|....|+-.++|.+|+|++.+.++.+....||+.|++||-.+|++.++....++-..+..
T Consensus 430 kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 430 KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997567777889999999999999999999886666555444
No 7
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.87 E-value=4.4e-20 Score=177.50 Aligned_cols=233 Identities=17% Similarity=0.289 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC--CHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~--~~~lW~~y~ 99 (438)
.+.+|..|+++|+..|.++....+|+|.|..---.|.+=++|+.||+.+ .-.+.+.++|+|+|..||| ..+||..|+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 3568999999999999999999999999998888999999999999976 4567799999999999965 669999999
Q ss_pred HHHHHc--cCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013667 100 LSLERS--RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 100 ~~le~~--~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
..+-.. +...+.++.+|++||...++....+ +|+.|...-. .++-......+|++|..-..
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKt--iyLlYA~lEE----------e~GLar~amsiyerat~~v~----- 617 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKT--IYLLYAKLEE----------EHGLARHAMSIYERATSAVK----- 617 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHH----------HhhHHHHHHHHHHHHHhcCC-----
Confidence 744433 3347899999999998655533322 3333322111 00111122244455433321
Q ss_pred CchhHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhccch--HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013667 178 TDGLLRLYAYWAHLE-QSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e-~~~~~~~~~ar~i~e~~l~~~~~~--~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (438)
..+.+++|..|+.-- ...| +...|.||++++...|++ .++.+.|++||.+.|.+++||.||.-+-+. +++....
T Consensus 618 ~a~~l~myni~I~kaae~yG--v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYG--VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCCh
Confidence 234567888887644 4445 889999999999997765 369999999999999999999999999873 5677778
Q ss_pred HHHHHHHHHHHHhCCHHHHHH
Q 013667 255 DICHAWLRFEREYGTLEDFDH 275 (438)
Q Consensus 255 ~i~~~~~~fE~~~G~~~~~~~ 275 (438)
.+|+.|-.||-.|||.+++++
T Consensus 695 ~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999987
No 8
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.87 E-value=9.4e-20 Score=175.75 Aligned_cols=274 Identities=19% Similarity=0.314 Sum_probs=210.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
..|..|-..|...|. .+..|.+|+++|.+.|..+.+..+|||+|...|.+.++|+.|+.++....++++.++..|+
T Consensus 63 ~~r~~y~~fL~kyPl----~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPL----CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHhhCcc----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 478999999999998 8889999999999999999999999999999999999999999999988788888999999
Q ss_pred HHHHcCCC---CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHH-------------hhh
Q 013667 83 RATKNCPW---VGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRR-------------RIL 146 (438)
Q Consensus 83 rAl~~~p~---~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~r-------------r~~ 146 (438)
||+..+.. |+.||-.||.+. ..+.+...+-.||+|.+..+...+..+.+.|...++...- ...
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~e-n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFE-NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHH-hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 99998853 779999999955 5578889999999999988776666666555544432100 000
Q ss_pred cc-----------ccc----------chhhcH---------HHHHHHHHHHHHHHhhh-------------hcC-CchhH
Q 013667 147 FS-----------GEV----------EGVLDY---------SLIRETFQRASDYLSEQ-------------MKN-TDGLL 182 (438)
Q Consensus 147 ~~-----------~~~----------~~~~~~---------~~~r~~f~~a~~~l~~~-------------~~~-~~~~~ 182 (438)
.. +.. ....+. ...+.+|+.....+.+. .+. ....+
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 00 000 001111 01112222221111111 111 23356
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~ 262 (438)
..|.+|..++...| +.+.+--.|++++-.+....++|+.|+.|....|+.+-|..++.+++.. .......|--.|..
T Consensus 298 ~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i--~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI--HVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh--cCCCCcHHHHHHHH
Confidence 78999999999999 9999999999999999998899999999999999999999999999984 33445578888999
Q ss_pred HHHHhCCHHHHHHHHHhhhhhH
Q 013667 263 FEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 263 fE~~~G~~~~~~~a~~~~~~~l 284 (438)
||+..||..+...+++++...+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC
Confidence 9999999999888887765543
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.83 E-value=2.3e-18 Score=165.86 Aligned_cols=257 Identities=19% Similarity=0.289 Sum_probs=186.9
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-------chhHH
Q 013667 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-------VGNVV 77 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~-------~~~~~ 77 (438)
-.+||.-|.++|. +...|..||++-.. ....+...+||||++..|.+..||.+|+..-..+-+ ..+.+
T Consensus 13 DvpfEeEilRnp~----svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 13 DVPFEEEILRNPF----SVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESV 87 (835)
T ss_pred ccchHHHHHcCch----hHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHH
Confidence 3579999999998 88999999997654 344678889999999999999999999976554322 22458
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-----cHHHHHHHHHH-----HHHHHHHhhhc
Q 013667 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLT-----RIDGLRRRILF 147 (438)
Q Consensus 78 ~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-----~~~~~~~~~~~-----~~~~l~rr~~~ 147 (438)
..+|+|++...-.++.||..|+.++-. ++....++.+|.+||..-+. .|..|+.+... ++-.+.||.+.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~-Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIK-QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh-cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 899999999666666999999997765 67889999999999976443 34444443321 22223344432
Q ss_pred --ccccchhhcHHHHHHHHHHHHHHHhhhh-------cCCchhHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhccch
Q 013667 148 --SGEVEGVLDYSLIRETFQRASDYLSEQM-------KNTDGLLRLYAYWAHLEQSMGKDM--VSARGVWERLLKISGAM 216 (438)
Q Consensus 148 --~~~~~~~~~~~~~r~~f~~a~~~l~~~~-------~~~~~~~~l~~~~a~~e~~~~~~~--~~ar~i~e~~l~~~~~~ 216 (438)
....++++++-....-.+.|.+.+...+ +...+.+.+|....++..++.+.+ -..-.|+..++..++|+
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 2334445544333333344433332222 124667789999988877655211 24567899999999999
Q ss_pred H-HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013667 217 L-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (438)
Q Consensus 217 ~-~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (438)
. .+|...+++.++.|.+++||.+|+.|+.....-.+-..|++.|++||+..
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~ 298 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESC 298 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHH
Confidence 8 59999999999999999999999999987655566779999999999864
No 10
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.6e-16 Score=152.12 Aligned_cols=243 Identities=18% Similarity=0.248 Sum_probs=192.9
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHc
Q 013667 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (438)
Q Consensus 8 ~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~ 87 (438)
++.++...|. ....|+-|+..--..|+...++.+..+|+..+|++.++|+.-+..+..+ ...+.++.+|.+|-..
T Consensus 573 lqkav~~~pk----ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en-~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 573 LQKAVEQCPK----AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN-DELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHhCCc----chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHhcc
Confidence 3444444554 4568999999877889999999999999999999999999999977644 4668899999999876
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHH
Q 013667 88 CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRA 167 (438)
Q Consensus 88 ~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a 167 (438)
-| ...+|+.++. +|+..++.+++..++++||..-+. +-.+|+..-... .++ .+++..|.+|..+
T Consensus 648 sg-TeRv~mKs~~-~er~ld~~eeA~rllEe~lk~fp~----f~Kl~lmlGQi~-e~~---------~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 648 SG-TERVWMKSAN-LERYLDNVEEALRLLEEALKSFPD----FHKLWLMLGQIE-EQM---------ENIEMAREAYLQG 711 (913)
T ss_pred CC-cchhhHHHhH-HHHHhhhHHHHHHHHHHHHHhCCc----hHHHHHHHhHHH-HHH---------HHHHHHHHHHHhc
Confidence 55 6689999998 777788999999999999975332 334443221111 011 2344445555444
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Q 013667 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR 247 (438)
Q Consensus 168 ~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~ 247 (438)
+. .+|.+..||+..+++|.+.| ++.+||.|++++.-.+|++..+|++-|++|.+.|+.+.|+.+..+||+.
T Consensus 712 ~k-------~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 712 TK-------KCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred cc-------cCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 43 46777789999999999999 8999999999999999999999999999999999999999999999983
Q ss_pred cCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 013667 248 FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (438)
Q Consensus 248 ~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~ 282 (438)
++.+..+|-.-|-+|...+.-.-..+|+.+|..
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 455678999999999888876666677887743
No 11
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.77 E-value=5.9e-17 Score=167.44 Aligned_cols=211 Identities=19% Similarity=0.272 Sum_probs=172.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC-CC----CHHHHHHHHHHHHHccCCHHHHHHHHH
Q 013667 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PW----VGELWVRSLLSLERSRASEEEISTVFE 117 (438)
Q Consensus 43 ~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~-p~----~~~lW~~y~~~le~~~~~~~~~~~i~~ 117 (438)
..=|+|.|..+|++.-+|++|+.|.... .+.+.++.+.+|||+.+ +. -..||+.|+. ||...++.+.+..+|+
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lN-lEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLN-LENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHh-HHHhhCcHHHHHHHHH
Confidence 4679999999999999999999998743 56788999999999976 33 2369999987 8888899999999999
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCC
Q 013667 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK 197 (438)
Q Consensus 118 ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~ 197 (438)
||.+...+ +.++++.++.+. .-.-|+.|.++|..+++.+.+...+|..|+++..++.
T Consensus 1522 RAcqycd~-----~~V~~~L~~iy~-----------------k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n- 1578 (1710)
T KOG1070|consen 1522 RACQYCDA-----YTVHLKLLGIYE-----------------KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN- 1578 (1710)
T ss_pred HHHHhcch-----HHHHHHHHHHHH-----------------HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc-
Confidence 99874332 334444333321 1234566777777777766677889999999999998
Q ss_pred CHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHH
Q 013667 198 DMVSARGVWERLLKISGA--MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~--~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (438)
+-+.||.++.+||+..|. +.++...++++|..+|+.+++|.+|+-.+.. -+.-.++|..|++.|..+|+.+.++.
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a---yPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA---YPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh---CccchhHHHHHHHHHHccCCHHHHHH
Confidence 789999999999999887 6789999999999999999999999998872 23345899999999999999999998
Q ss_pred HHHhhh
Q 013667 276 SVQKVT 281 (438)
Q Consensus 276 a~~~~~ 281 (438)
..+++.
T Consensus 1656 lfeRvi 1661 (1710)
T KOG1070|consen 1656 LFERVI 1661 (1710)
T ss_pred HHHHHH
Confidence 877754
No 12
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.69 E-value=4.5e-16 Score=144.71 Aligned_cols=122 Identities=27% Similarity=0.448 Sum_probs=100.2
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHH
Q 013667 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~ 234 (438)
..++..|.+|.+|+. .....+++|..+|.+|...++|.+.|++||+.+++.+|++..+|+.|++|+...|+.+
T Consensus 15 ~g~~~aR~vF~~a~~-------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 15 EGIEAARKVFKRARK-------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHHC-------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred CChHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHH
Confidence 346677888888864 2445678999999999998879999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCC-hHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013667 235 EARSIYKRCYSKRFTGTG-SEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 235 ~ar~i~~ral~~~~~~~~-~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
+||.+|+|++.. ++... ...||..|++||..||+++++..+..++...+
T Consensus 88 ~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 88 NARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999984 55555 67899999999999999999988766655443
No 13
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.66 E-value=9.3e-14 Score=131.23 Aligned_cols=136 Identities=24% Similarity=0.429 Sum_probs=105.8
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcC--------------------ChhhHHHHHHHHHhcCCCCHHHHH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--------------------DPGRVQLLYERAITDFPVSSDLWL 61 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g--------------------~~~~~~~~yERal~~~p~~~~lW~ 61 (438)
.+.|..||..|.+... ...-++.||++|.... -+.+|..+|.+|+..++.++.+|.
T Consensus 34 vk~Rr~fE~kL~rr~~----~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~ 109 (568)
T KOG2396|consen 34 VKKRRDFELKLQRRTL----SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWL 109 (568)
T ss_pred HHHHHHHHHHHccCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4678899999987654 4556888888875421 146788899999999999999999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc---cHHHHHHHHHHHH
Q 013667 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLTRI 138 (438)
Q Consensus 62 ~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~---~~~~~~~~~~~~~ 138 (438)
+|+.|..+. +.+..+-.||..+++.+|.+++||+..+.++-..+.+.+.++.+|.++|..++. .+.+|+.+.+.++
T Consensus 110 ~yi~f~kk~-~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 110 SYIAFCKKK-KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHHHHh-cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 999998754 335668899999999999999999998887666667789999999999987766 3555666666666
Q ss_pred HHHH
Q 013667 139 DGLR 142 (438)
Q Consensus 139 ~~l~ 142 (438)
.-++
T Consensus 189 ~Kl~ 192 (568)
T KOG2396|consen 189 EKLR 192 (568)
T ss_pred HHHH
Confidence 5544
No 14
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.63 E-value=2e-14 Score=133.74 Aligned_cols=228 Identities=18% Similarity=0.254 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHhcC-----C--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHH
Q 013667 24 QQYMIYLKYEQSSG-----D--PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g-----~--~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~ 96 (438)
..|+++|+||..+| + ..|+--+|+.++...|.++++|.+|..|+... .+...+..+.+|++..||. |..
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~i-sd~q~al~tv~rg~~~sps---L~~ 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGI-SDKQKALKTVERGIEMSPS---LTM 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc-cHHHHHHHHHHhcccCCCc---hhe
Confidence 45999999998875 2 35888899999999999999999999999854 4556688888888888884 666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC------------------cc-cHHHHH-------HHHHHHHHHHHHhhhcccc
Q 013667 97 RSLLSLERSRASEEEISTVFEKSLLCA------------------FS-TFEEYL-------DLFLTRIDGLRRRILFSGE 150 (438)
Q Consensus 97 ~y~~~le~~~~~~~~~~~i~~ral~~~------------------~~-~~~~~~-------~~~~~~~~~l~rr~~~~~~ 150 (438)
.|....|. ..+.+.+...|+++++.- +. ..+..+ -+|..++++++|.
T Consensus 338 ~lse~yel-~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~------ 410 (660)
T COG5107 338 FLSEYYEL-VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK------ 410 (660)
T ss_pred eHHHHHhh-cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH------
Confidence 76665554 667788999888877421 00 011111 1233344444433
Q ss_pred cchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc
Q 013667 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL 230 (438)
Q Consensus 151 ~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~ 230 (438)
..++.+|.+|.++.+.- . ...+++...|-+|....+|...|-.||+.++..+|+...+-..|+.|....
T Consensus 411 ----~Gl~aaR~~F~k~rk~~--~-----~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 411 ----RGLEAARKLFIKLRKEG--I-----VGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred ----hhHHHHHHHHHHHhccC--C-----CCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 34566778888776631 1 122377778888877777999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 013667 231 DHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (438)
Q Consensus 231 g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (438)
|+-++||.+|+.++.+ +..+....||+.|+++|-.+|++..+-
T Consensus 480 nde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 480 NDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred CcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 9999999999999985 444556789999999999999986653
No 15
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.5e-13 Score=129.92 Aligned_cols=91 Identities=14% Similarity=0.276 Sum_probs=83.0
Q ss_pred hHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013667 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
.|-.++.+++. +...|..|+.+.++.+.+.++-.+|..+|..+|+++++|+.-+.++..-+.+.+.++++|.|+|+
T Consensus 93 lyr~at~rf~~----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 93 LYRRATNRFNG----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 46777777775 78899999999999999999999999999999999999999999998766667889999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 013667 87 NCPWVGELWVRSLLS 101 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~ 101 (438)
.+|.++.||..|+++
T Consensus 169 ~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRM 183 (568)
T ss_pred cCCCChHHHHHHHHH
Confidence 999999999999973
No 16
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.60 E-value=7.8e-13 Score=128.34 Aligned_cols=257 Identities=18% Similarity=0.223 Sum_probs=186.7
Q ss_pred hhhHhHHHHHhcCC----CCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHH
Q 013667 3 NARAHLEEQISRQD----LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (438)
Q Consensus 3 ~~R~~~E~~l~~~~----~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~ 78 (438)
+.|+.||..|++.. +.+..+...|+.|++++...|+..++..+|+||+..|.+..++|++|+.+++.. ++.+-+.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~-~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS-GDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc-CchhHHH
Confidence 57899999998852 346778889999999999999999999999999999999999999999999977 5667788
Q ss_pred HHHHHHHH-cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcH
Q 013667 79 DVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (438)
Q Consensus 79 ~i~erAl~-~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (438)
.++.+|++ ++|....|...++.+.| ..+++..|+.++++..+..+. ++.+-+.++...+|+...
T Consensus 352 ~~~~~~~~i~~k~~~~i~L~~a~f~e-~~~n~~~A~~~lq~i~~e~pg----~v~~~l~~~~~e~r~~~~---------- 416 (577)
T KOG1258|consen 352 NVLARACKIHVKKTPIIHLLEARFEE-SNGNFDDAKVILQRIESEYPG----LVEVVLRKINWERRKGNL---------- 416 (577)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHHH-hhccHHHHHHHHHHHHhhCCc----hhhhHHHHHhHHHHhcch----------
Confidence 99999999 56888899999998544 578999999999998876533 222333333333333211
Q ss_pred HHHHHHHHHHHHHHhhhhc--CCch-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc---
Q 013667 158 SLIRETFQRASDYLSEQMK--NTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD--- 231 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~--~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g--- 231 (438)
..... .. ...+.... .+.+ .-.+...++++-....++.+.|+.++..++...|+.-.+|+.+++|+..++
T Consensus 417 ~~~~~-~~---~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 417 EDANY-KN---ELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred hhhhH-HH---HHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 01110 11 11111111 1222 234677788888887779999999999999999999999999999999875
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
+++-.-.++...+......+.+-.--+.|+.|-..+|+......+...
T Consensus 493 e~d~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~~~ 540 (577)
T KOG1258|consen 493 EYDLLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDERP 540 (577)
T ss_pred hhhhhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhchH
Confidence 344455555555543333344444445699999999987666554443
No 17
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.59 E-value=4.3e-13 Score=125.01 Aligned_cols=270 Identities=16% Similarity=0.202 Sum_probs=193.0
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-----chhH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-----VGNV 76 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~-----~~~~ 76 (438)
-+.|+.||+.+.-+|. -..+|..|+.-|....++..+..+|-|||... ++.+||.-|+.|+.+... ....
T Consensus 59 ~~~re~yeq~~~pfp~----~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~ 133 (660)
T COG5107 59 DAEREMYEQLSSPFPI----MEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFK 133 (660)
T ss_pred HHHHHHHHHhcCCCcc----ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhh
Confidence 4679999999988887 44589999999999999999999999999875 679999999999986542 1233
Q ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCcccHHHH---HHHHHHHHHHHH
Q 013667 77 VRDVYSRATKNC---PWVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTFEEY---LDLFLTRIDGLR 142 (438)
Q Consensus 77 ~~~i~erAl~~~---p~~~~lW~~y~~~le~~--------~~~~~~~~~i~~ral~~~~~~~~~~---~~~~~~~~~~l~ 142 (438)
+.++|+-.+.+. |.++.+|..|..+++.- +..++.++.+|.||+..++.+.+.+ +.-|..-++.+.
T Consensus 134 i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~T 213 (660)
T COG5107 134 IYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKIT 213 (660)
T ss_pred hHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHH
Confidence 556676666622 88999999999988752 2346789999999999988754432 233332232222
Q ss_pred -HhhhcccccchhhcHHHHHHHHHHHHHHHhh-----------hhcCCchhHHHHHHHHHHHHHc----CCCH--HHHHH
Q 013667 143 -RRILFSGEVEGVLDYSLIRETFQRASDYLSE-----------QMKNTDGLLRLYAYWAHLEQSM----GKDM--VSARG 204 (438)
Q Consensus 143 -rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~-----------~~~~~~~~~~l~~~~a~~e~~~----~~~~--~~ar~ 204 (438)
|++..... ..+...|..|++......- +-+..-....-|+.|+++|... ++++ .+.--
T Consensus 214 arKfvge~s----p~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y 289 (660)
T COG5107 214 ARKFVGETS----PIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHY 289 (660)
T ss_pred HHHHhcccC----HHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHH
Confidence 33332211 3344555555543332110 0000011234599999999753 2232 35667
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013667 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 205 i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
+|+.++..++-..++|..|..+....++-++|.....+++.- .| .+-..+..+++...+.+++..|.++|...|
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-----sp-sL~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-----SP-SLTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-----CC-chheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 899999999988999999999999999999999999999862 12 266677888888889999999999998888
Q ss_pred HH
Q 013667 285 EE 286 (438)
Q Consensus 285 ~~ 286 (438)
.+
T Consensus 364 ~r 365 (660)
T COG5107 364 KR 365 (660)
T ss_pred HH
Confidence 65
No 18
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.55 E-value=4.7e-13 Score=127.40 Aligned_cols=206 Identities=16% Similarity=0.287 Sum_probs=149.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013667 47 ERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 47 ERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
++-|..+|++.+-|...+...... ..++++..||+.+..+|.++..|..||. .|....+++.++.+|.|||.....
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~FP~s~r~W~~yi~-~El~skdfe~VEkLF~RCLvkvLn- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVFPSSPRAWKLYIE-RELASKDFESVEKLFSRCLVKVLN- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCCCcHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHhh-
Confidence 677889999999999999987654 6788999999999999999999999998 566688899999999999975333
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH---cC-----CC
Q 013667 127 FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS---MG-----KD 198 (438)
Q Consensus 127 ~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~---~~-----~~ 198 (438)
+++|..|++|+|+.-.... .--..+..+|+-++.- ..-....+.+|..|+.|... .| -.
T Consensus 86 ----lDLW~lYl~YVR~~~~~~~-----~~r~~m~qAy~f~l~k----ig~di~s~siW~eYi~FL~~vea~gk~ee~QR 152 (656)
T KOG1914|consen 86 ----LDLWKLYLSYVRETKGKLF-----GYREKMVQAYDFALEK----IGMDIKSYSIWDEYINFLEGVEAVGKYEENQR 152 (656)
T ss_pred ----HhHHHHHHHHHHHHccCcc-----hHHHHHHHHHHHHHHH----hccCcccchhHHHHHHHHHcccccccHHHHHH
Confidence 7999999999986542211 1112233444444332 22123456799999887643 11 04
Q ss_pred HHHHHHHHHHHHHhccchH-HHHHHHHHHHHhcc-------------cHHHHHHHHHHHH------hccc---CCCCh--
Q 013667 199 MVSARGVWERLLKISGAML-EAWQSYISMEIELD-------------HINEARSIYKRCY------SKRF---TGTGS-- 253 (438)
Q Consensus 199 ~~~ar~i~e~~l~~~~~~~-~~W~~y~~~e~~~g-------------~~~~ar~i~~ral------~~~~---~~~~~-- 253 (438)
++..|.+|++++...-.+. .+|..|..||...+ ++.+||.+++... .+.. ++..+
T Consensus 153 I~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 153 ITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 7899999999999865555 69999999997643 3568888877443 3221 11111
Q ss_pred ----HHHHHHHHHHHHHhCC
Q 013667 254 ----EDICHAWLRFEREYGT 269 (438)
Q Consensus 254 ----~~i~~~~~~fE~~~G~ 269 (438)
-.+|..||.+|+..+-
T Consensus 233 e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 233 EIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 1689999999998763
No 19
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.53 E-value=1.8e-13 Score=127.29 Aligned_cols=97 Identities=15% Similarity=0.296 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
+|+.|+.+....+.++.++.+|++|+...+....+|+.|+.+.....++...+..||+++++.+|.+..+|..|+.++..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 58888888888777888888888888666677888888887766656676678888888888888888888888876654
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 013667 105 SRASEEEISTVFEKSLLC 122 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~ 122 (438)
.++.+.++.+|+|++..
T Consensus 83 -~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 83 -LNDINNARALFERAISS 99 (280)
T ss_dssp -TT-HHHHHHHHHHHCCT
T ss_pred -hCcHHHHHHHHHHHHHh
Confidence 45677778888877754
No 20
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=5.8e-11 Score=118.61 Aligned_cols=216 Identities=18% Similarity=0.175 Sum_probs=144.6
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQ-SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~-~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erA 84 (438)
..||.++...+. +.+.|+.|..+.. ..+-++++..+|-||+..||...+||..|+.-+..+......+...++++
T Consensus 333 l~~eR~~~E~~~----~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ 408 (881)
T KOG0128|consen 333 LIEERAVAEMVL----DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKD 408 (881)
T ss_pred HHHHHHHHhccc----cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHH
Confidence 356777777665 5678999988764 34567788999999999999999999999977777665666677778888
Q ss_pred HHcCCCCHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCcccHHHHHHH-HHHHHHHHH--Hhhhcccccchhhc
Q 013667 85 TKNCPWVGELWVRSLLSLERSR-----ASEEEISTVFEKSLLCAFSTFEEYLDL-FLTRIDGLR--RRILFSGEVEGVLD 156 (438)
Q Consensus 85 l~~~p~~~~lW~~y~~~le~~~-----~~~~~~~~i~~ral~~~~~~~~~~~~~-~~~~~~~l~--rr~~~~~~~~~~~~ 156 (438)
+.. ...++..|+.++.+.. ...+.++..|..|..- +..+... +.+.+.++. +++ +
T Consensus 409 ls~---~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~e----Lt~~~~~~~Dt~~~~~q~wA~~----------E 471 (881)
T KOG0128|consen 409 LSM---TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEE----LTELYGDQLDTRTEVLQLWAQV----------E 471 (881)
T ss_pred HHH---HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH----HHHHhhhhhhhHHHHHHHHHHH----------H
Confidence 774 2246666665444321 1235566777766531 0111111 222221111 000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchhHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccc-hHHHHHHHHHHHHhccc
Q 013667 157 YSLIRETFQRASDYLSEQMKNTDGLLR-LYAYWAHLEQSMGKDMVSARGVWERLLKI--SGA-MLEAWQSYISMEIELDH 232 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~-l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~-~~~~W~~y~~~e~~~g~ 232 (438)
..+-...+.|+.+....+......+. .|+.|+++|..+| +...||.++.+++.. .|+ ...+...|.+||+..|+
T Consensus 472 -~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g-~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 472 -ASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYG-DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred -HHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhC-CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 11224446666666555544455566 9999999999999 899999999999977 555 34689999999999999
Q ss_pred HHHHHHHHHHHH
Q 013667 233 INEARSIYKRCY 244 (438)
Q Consensus 233 ~~~ar~i~~ral 244 (438)
++.......+.+
T Consensus 550 l~~~~~~~~~~~ 561 (881)
T KOG0128|consen 550 LESFDLCPEKVL 561 (881)
T ss_pred HHHHhhhHHhhc
Confidence 887776655544
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.36 E-value=8.7e-11 Score=113.82 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=119.0
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
|.+-..||++++-.|. -.++|++.....+..+.+++++..|+||+...|++....-+.+-.... .+..+.++..|
T Consensus 235 ~~aiq~y~eAvkldP~----f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Y 309 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPN----FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTY 309 (966)
T ss_pred HHHHHHHHHhhcCCCc----chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHH
Confidence 3455667777766664 455677777766666777777777777777777665554443332222 23556677777
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHH
Q 013667 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (438)
+|||..-|+....+...+..|-. .++..++.+.|.+||...+...+.+..+-..+- .. ..++...
T Consensus 310 kral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-----E~---------~~~e~A~ 374 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-----EQ---------GKIEEAT 374 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-----Hh---------ccchHHH
Confidence 77777777777777776665443 466677777777777655544443333222111 11 1111222
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
..|..|+.+ .+.....+...+.++...| +++.|...|+.+|+..|.-.+.......-....|+.+.|.+.|.
T Consensus 375 ~ly~~al~v-------~p~~aaa~nNLa~i~kqqg-nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 375 RLYLKALEV-------FPEFAAAHNNLASIYKQQG-NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred HHHHHHHhh-------ChhhhhhhhhHHHHHHhcc-cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 223333332 2333334444555555555 55666666666665555555544444555555555556666666
Q ss_pred HHHh
Q 013667 242 RCYS 245 (438)
Q Consensus 242 ral~ 245 (438)
|||.
T Consensus 447 rAI~ 450 (966)
T KOG4626|consen 447 RAIQ 450 (966)
T ss_pred HHHh
Confidence 6654
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.32 E-value=1e-09 Score=114.29 Aligned_cols=239 Identities=14% Similarity=0.090 Sum_probs=142.0
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++-..|+.+|..... .+.....|...+.+....|+++.++..|+++|..+|.+...|+..+..+.. .++.+.+...|+
T Consensus 312 ~A~~~~~~al~~~~~-~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~ 389 (615)
T TIGR00990 312 EAARAFEKALDLGKL-GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 345567777755421 123444566666666667777777777777777777777777777765553 345566777777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHH---------HHHHHHHhhh-cccccc
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT---------RIDGLRRRIL-FSGEVE 152 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~---------~~~~l~rr~~-~~~~~~ 152 (438)
+++...|....+|...... ....++.+++...|++++...+.....++.+-.. -+..+.+-+. .....+
T Consensus 390 ~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQL-HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 7777777777777776653 3345667777777777776665533332221111 0111111000 011100
Q ss_pred ----------hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHH
Q 013667 153 ----------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQS 222 (438)
Q Consensus 153 ----------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~ 222 (438)
...++......|++|+..-............++.....+....+ +++.|..++++++..+|+....|..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 01223334444444444321100000011112222222323346 8999999999999999998889999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHh
Q 013667 223 YISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 223 y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+......|+++.|...|++++.
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999987
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.28 E-value=7.3e-09 Score=107.91 Aligned_cols=187 Identities=10% Similarity=0.033 Sum_probs=117.1
Q ss_pred hcCChhhHHHHHHHHHhcC---CCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHH
Q 013667 35 SSGDPGRVQLLYERAITDF---PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~---p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~ 111 (438)
..+.++.+..+|++++... |.....|.....+... .++.+.+...|++++...|.....|......+. ..++.++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~-~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~e 383 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL-KGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDK 383 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHH
Confidence 3467889999999999864 6666777777666553 457788999999999999999999988877554 4678899
Q ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q 013667 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (438)
Q Consensus 112 ~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (438)
+...|++++...+.....+..+-..+. .. .++......|++++. ..+.....|...+.+
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~-----~~---------g~~~~A~~~~~kal~-------l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHF-----IK---------GEFAQAGKDYQKSID-------LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHH-------cCccCHHHHHHHHHH
Confidence 999999999876664443332211110 00 222222233333222 233333344455555
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....| +++.|...|++++..+|+...+|..+.......|+++.|...|++++.
T Consensus 443 ~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 443 QYKEG-SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55555 555555555555555555555555555555555555555555555554
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=6e-09 Score=112.88 Aligned_cols=197 Identities=14% Similarity=0.042 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|+++.+..+|++++...|.+...|..++..... .+..+.+..+|++++...|.....|..++..+..
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ-EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555555554443332 2233445555555555555554555544443332
Q ss_pred ccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHH
Q 013667 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l 184 (438)
.+..+++..+|++++...+.....++.+-..+. ..+-+++|+.++.......+....+
T Consensus 546 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 546 -TGNEEEAVAWLEKAAELNPQEIEPALALAQYYL---------------------GKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred -cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 344455555555554433332221111110000 0111233333333333323333445
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|...+.+....+ +++.|...|++++...|++...|..++.+....|+++.|..+|++++.
T Consensus 604 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 604 WLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555666655555 566666666666666666666666666666666666666666666665
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.24 E-value=1.4e-08 Score=105.97 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=45.3
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|...+..++...|....++..++.+....| +++.|...+++++...|++..++..+.......|+++.|...|++++.
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444454444444444455555666555555 566666666666666666665565555555556666666666666654
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.22 E-value=1.5e-08 Score=109.69 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=142.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+...|..++...... +..+.+..+|+
T Consensus 483 ~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 557 (899)
T TIGR02917 483 KAREAFEKALSIEPD----FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT-GNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHhhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 466778888877765 6778888888888999999999999999999999999999998877654 46677999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|.....|...+..+.. .+..+.+..++++++...+.....+..+-..+. +. .++.....
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~---------~~~~~A~~ 622 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLG-KGQLKKALAILNEAADAAPDSPEAWLMLGRAQL-----AA---------GDLNKAVS 622 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----Hc---------CCHHHHHH
Confidence 9999999888888887775554 678889999999988765554333222211110 00 11112222
Q ss_pred ---------------------------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013667 163 ---------------------------TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 163 ---------------------------~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
-+++|..++...+...+.....|...+.+....| +++.|..+++.+....|.
T Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~ 701 (899)
T TIGR02917 623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK-RTESAKKIAKSLQKQHPK 701 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcC
Confidence 2344444444444333333444444455544444 455555555555555554
Q ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 216 MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 216 ~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....|..........|+++.|...|++++.
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444554444444455555555555555554
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.18 E-value=3e-08 Score=110.38 Aligned_cols=264 Identities=11% Similarity=0.054 Sum_probs=169.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------------
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK------------- 69 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~------------- 69 (438)
+|...|+.+|...|. +...+...+......|+++.+...|++++...|.+...|......+..
T Consensus 369 eA~~~~~~Al~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 369 QAERLYQQARQVDNT----DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 467788889988775 667888888989999999999999999999999999888655443210
Q ss_pred ----------------------------hccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013667 70 ----------------------------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (438)
Q Consensus 70 ----------------------------~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~ 121 (438)
..+..+.+..+|++|+...|.+..++...+..+. ..+..+++..+|++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 1234567889999999999999888888777555 47889999999999997
Q ss_pred CCcccHHHHHH--HHHH-------HHHHHHHhhhcccccchhhc---------------HHHHHHHHHHHHHHHhhhhcC
Q 013667 122 CAFSTFEEYLD--LFLT-------RIDGLRRRILFSGEVEGVLD---------------YSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 122 ~~~~~~~~~~~--~~~~-------~~~~l~rr~~~~~~~~~~~~---------------~~~~r~~f~~a~~~l~~~~~~ 177 (438)
..+......+. ++.. ....+. ++..........+ .-....-++.|+.++..
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~-~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLN-TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 66554332221 1111 001111 0000000000000 00001123455555542
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHH
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~ 257 (438)
.+....++...+.+....| +++.|...|++++...|++...|+..+.+....|+++.|..+|++++.. .++.+ .++
T Consensus 599 ~p~~~~~~~~La~~~~~~g-~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~-~~~ 674 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRG-DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL-NTQ 674 (1157)
T ss_pred CCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh-HHH
Confidence 3334456677777777777 7888888888888888888888888888888888888888888887762 22333 222
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhh
Q 013667 258 HAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 258 ~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
......-...|+.+.-...++++
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 22222333456655444444443
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.18 E-value=4e-08 Score=102.56 Aligned_cols=215 Identities=13% Similarity=0.037 Sum_probs=152.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.|...|+..+...|. +...|...+......|+++.+...|++++...|.++.+|...+..+.. .+..+.+..+|.
T Consensus 94 ~A~~~l~~~l~~~P~----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~-~g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNVC----QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL-MDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCChHHHHHHHH
Confidence 567889999998886 677899888888899999999999999999999999999999887664 456677999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|.....|...+. +. ..+..+++..++.+++...+........ ... ..+. .. .++.....
T Consensus 169 ~~~~~~P~~~~a~~~~~~-l~-~~g~~~eA~~~~~~~l~~~~~~~~~~~~-~l~--~~l~-~~---------g~~~eA~~ 233 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLS-FL-NKSRLPEDHDLARALLPFFALERQESAG-LAV--DTLC-AV---------GKYQEAIQ 233 (656)
T ss_pred HHHHhCCCCHHHHHHHHH-HH-HcCCHHHHHHHHHHHHhcCCCcchhHHH-HHH--HHHH-HC---------CCHHHHHH
Confidence 999999988888766543 33 3678888999999988764321111111 000 0000 00 22333334
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHH
Q 013667 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS----ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~----ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
.|.+++. ..+....++..++.+....| +.+. |...|++++...|++..+|..+.......|+++.|..
T Consensus 234 ~~~~al~-------~~p~~~~~~~~Lg~~l~~~G-~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 234 TGESALA-------RGLDGAALRRSLGLAYYQSG-RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHh-------cCCCCHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444433 23444556667777777777 5553 7788888888888877788888887777888888888
Q ss_pred HHHHHHh
Q 013667 239 IYKRCYS 245 (438)
Q Consensus 239 i~~ral~ 245 (438)
.|++++.
T Consensus 306 ~l~~al~ 312 (656)
T PRK15174 306 LLQQSLA 312 (656)
T ss_pred HHHHHHH
Confidence 8888876
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.16 E-value=3.5e-09 Score=102.94 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=167.2
Q ss_pred hhhHhHHHHHhcCCCCChHhHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQ-QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~-~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
++...|-++|...|. +. +|.+..-.-...|++-+++.-|+.|++..|...+.+++....+.. ....+.+..+|
T Consensus 202 ea~~cYlkAi~~qp~-----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke-~~~~d~Avs~Y 275 (966)
T KOG4626|consen 202 EAKACYLKAIETQPC-----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE-ARIFDRAVSCY 275 (966)
T ss_pred hhHHHHHHHHhhCCc-----eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-HhcchHHHHHH
Confidence 455666677766652 33 577777777777888888888888888888888888888876653 34567788888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHH
Q 013667 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (438)
.||+..-|.....+-..+- ....++..+.+...|+||+...+...+.|-.+-.+. .+.+++....
T Consensus 276 ~rAl~lrpn~A~a~gNla~-iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL--------------kd~G~V~ea~ 340 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLAC-IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL--------------KDKGSVTEAV 340 (966)
T ss_pred HHHHhcCCcchhhccceEE-EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH--------------HhccchHHHH
Confidence 8888888877666555432 222357778888888888876665444443333211 0113455555
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
..|.+|+.+ ++.+.+-....+.+....+ .++.|-.+|++++..+|.-.......+.....+|+++.|...|+
T Consensus 341 ~cYnkaL~l-------~p~hadam~NLgni~~E~~-~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 341 DCYNKALRL-------CPNHADAMNNLGNIYREQG-KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred HHHHHHHHh-------CCccHHHHHHHHHHHHHhc-cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 666666665 4455556667778888888 79999999999999999998999999999999999999999999
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013667 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (438)
Q Consensus 242 ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~ 278 (438)
.||.. . ..+.++|.++-..+.....+..|+.
T Consensus 413 ealrI--~----P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 413 EALRI--K----PTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred HHHhc--C----chHHHHHHhcchHHHHhhhHHHHHH
Confidence 99973 2 2455566655544444444444443
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.15 E-value=1.2e-10 Score=96.48 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=47.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++|+++|+++|++||.|.+++|+.|+.||+++|||||
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV 81 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEE
Confidence 45669999999999999999999999999999999999999999999997
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=2.9e-07 Score=90.34 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=68.3
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH-HHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~-~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
.|..++...+...+.....+...+.+....| +++.|.++|++++...|+.. ..|...+......|+++.|...+++++
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQG-DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333323344456677777777777 78888888888888776653 466667777777888888888888888
Q ss_pred hcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013667 245 SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (438)
Q Consensus 245 ~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~ 278 (438)
.. .++ +. ++......-...|..+.....+.
T Consensus 277 ~~--~p~-~~-~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 277 EE--YPG-AD-LLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred Hh--CCC-ch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 63 222 22 33556666666676555444333
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.09 E-value=9.3e-10 Score=103.02 Aligned_cols=233 Identities=14% Similarity=0.083 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+...|..++.+....++.+.+...|++.+...+.++.....++.++ ..++++.+..+++++.+..+ +..+|..++..
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~--~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~ 119 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLL--QDGDPEEALKLAEKAYERDG-DPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc-ccchhhHHHHH
Confidence 5567888888877788888888888888887777777777777763 22455667777777776543 45666666664
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchh
Q 013667 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~ 181 (438)
+. ..+..+.+..+++++....... .-..+|..+..... +. ++.......|++|+.. .|..
T Consensus 120 ~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~-~~---------G~~~~A~~~~~~al~~-------~P~~ 179 (280)
T PF13429_consen 120 YY-RLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYE-QL---------GDPDKALRDYRKALEL-------DPDD 179 (280)
T ss_dssp HH-HTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHH-HC---------CHHHHHHHHHHHHHHH--------TT-
T ss_pred HH-HHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHH-Hc---------CCHHHHHHHHHHHHHc-------CCCC
Confidence 43 3566777777777766432110 11112222221111 11 2333444445554443 3444
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 013667 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~ 261 (438)
..++..++.+....| +.++++.++.......|++..+|..++......|+++.|..+|++++.. .+++| .+...|.
T Consensus 180 ~~~~~~l~~~li~~~-~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~-~~~~~~a 255 (280)
T PF13429_consen 180 PDARNALAWLLIDMG-DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDP-LWLLAYA 255 (280)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-H-HHHHHHH
T ss_pred HHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--ccccc-ccccccc
Confidence 456666666665666 6777777777777776666677777777777777777777777777763 33334 4455666
Q ss_pred HHHHHhCCHHHHHHHHHhhh
Q 013667 262 RFEREYGTLEDFDHSVQKVT 281 (438)
Q Consensus 262 ~fE~~~G~~~~~~~a~~~~~ 281 (438)
+.-...|..+.-.....++.
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHT----------------
T ss_pred cccccccccccccccccccc
Confidence 66666666555444444433
No 33
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.9e-11 Score=99.03 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=48.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+..-|||||||+..||.||--+|++||.|++|.|++|+.||+|+||||.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFL 82 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFL 82 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEE
Confidence 3466779999999999999999999999999999999999999999999994
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2e-07 Score=87.81 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=144.4
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
..+.+.|...+..+......|...+......|+...+...|++++..+|.++..|......+.. .++.+.+...|++|+
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al 125 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3445556554533334466788888888889999999999999999999999999999987764 457788999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHH
Q 013667 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~ 165 (438)
...|.....|......+. ..+..+++...|++++...+... +..+|..... . ..+.......|.
T Consensus 126 ~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~----~---------~~~~~~A~~~l~ 189 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDP--YRALWLYLAE----S---------KLDPKQAKENLK 189 (296)
T ss_pred HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH----c---------cCCHHHHHHHHH
Confidence 999999999988776554 46889999999999998776643 2223321110 0 022233333333
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------HhccchHHHHHHHHHHHHhcccHHHHHH
Q 013667 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL-------KISGAMLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l-------~~~~~~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
++...+ .+. .|. +......++ +...+ ..++.+. ...|+..+.|..........|+++.|+.
T Consensus 190 ~~~~~~------~~~---~~~-~~~~~~~lg-~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 190 QRYEKL------DKE---QWG-WNIVEFYLG-KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHhhC------Ccc---ccH-HHHHHHHcc-CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 322211 111 232 233334455 44333 3444444 3345566789999999999999999999
Q ss_pred HHHHHHh
Q 013667 239 IYKRCYS 245 (438)
Q Consensus 239 i~~ral~ 245 (438)
.|++|+.
T Consensus 258 ~~~~Al~ 264 (296)
T PRK11189 258 LFKLALA 264 (296)
T ss_pred HHHHHHH
Confidence 9999997
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=1.4e-07 Score=84.73 Aligned_cols=198 Identities=15% Similarity=0.049 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013667 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
...+...+......|+++.+...|++++...|.+...|...+..... .++.+.+...|++++...|....+|..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ-LGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45677777777889999999999999999999999999988876664 45677899999999999999888888877754
Q ss_pred HHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch
Q 013667 103 ERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (438)
Q Consensus 103 e~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (438)
. ..+..+++...|++++..... ....+..+- .+ . ... .++......|.+++.. .+.
T Consensus 110 ~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~--~-~~~---------g~~~~A~~~~~~~~~~-------~~~ 167 (234)
T TIGR02521 110 C-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAG--LC--A-LKA---------GDFDKAEKYLTRALQI-------DPQ 167 (234)
T ss_pred H-HcccHHHHHHHHHHHHhccccccchHHHHHHH--HH--H-HHc---------CCHHHHHHHHHHHHHh-------CcC
Confidence 4 467788888889888864211 111111100 00 0 000 2222333333333322 222
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
....+..++.+....+ +++.|..++++++...|+....|...+.+....|+.+.|+.+.+.+.
T Consensus 168 ~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 168 RPESLLELAELYYLRG-QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred ChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2334555555555555 56666666666666555555544455555555566666665555443
No 36
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1.6e-10 Score=89.22 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=47.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||||||++.++|+.|.++|+.||+|..|-|-.|+.+..+.|||||
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFV 83 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFV 83 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEE
Confidence 45679999999999999999999999999999999999989999999997
No 37
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.03 E-value=3.3e-08 Score=93.89 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=90.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC------------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD------------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~------------~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~ 70 (438)
+....|+..|+.+|. +.+.|+.|+++-...-. .++-+.+|||||..+|.+..||+.|+.....-
T Consensus 3 ~r~~el~~~v~~~P~----di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 3 KRTAELNRRVRENPH----DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred hHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 456788999999887 89999999998765421 23457899999999999999999999977654
Q ss_pred ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHh
Q 013667 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS--RASEEEISTVFEKSLL 121 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~--~~~~~~~~~i~~ral~ 121 (438)
. +.+.+..-+++++...|.+..||..||.+.... .-+.+.++.+|.++|.
T Consensus 79 ~-~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 79 W-DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred C-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 4 567788999999999999999999999876652 2346677777777775
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.02 E-value=2.9e-07 Score=102.58 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=135.7
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH--HHHHHHHHH-----------HHhh
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS--DLWLDYTQY-----------LDKT 70 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~--~lW~~Y~~~-----------l~~~ 70 (438)
|...|+.+|...|. +...|...+......|+++.+...|++++...|.+. ..|..++.. ....
T Consensus 288 A~~~l~~aL~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 288 AIPELQQAVRANPK----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556666666554 455666666666666777777777777777666543 234322210 0011
Q ss_pred ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccc
Q 013667 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGE 150 (438)
Q Consensus 71 ~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~ 150 (438)
.+..+.+...|++++...|.....|......+ ...+..+++...|++++...+.....+..+...+. .
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~-~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-----~------ 431 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVA-MARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-----Q------ 431 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----h------
Confidence 23455567777777777776666666554433 33566667777777777655443222221111110 0
Q ss_pred cchhhcHHHHHHHHHHHHHHHhhhhcCCc---------hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHH
Q 013667 151 VEGVLDYSLIRETFQRASDYLSEQMKNTD---------GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ 221 (438)
Q Consensus 151 ~~~~~~~~~~r~~f~~a~~~l~~~~~~~~---------~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~ 221 (438)
..+++|+.++........ -....+...+......+ +.+.|...|++++..+|++..++.
T Consensus 432 -----------~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 432 -----------QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred -----------cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 011223222221110000 00123445566666777 899999999999999999988888
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 013667 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (438)
Q Consensus 222 ~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (438)
..+......|+++.|..+|++++.. .++.++..+ ....+-...|..+.
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~-a~al~l~~~~~~~~ 547 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVY-AYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHhCCCHHH
Confidence 8888888999999999999999873 344454332 33333334454433
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.00 E-value=1.2e-06 Score=93.39 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=80.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+.+|...|. +...|...+......|+++.++.++++++...|.+.. |...+..+.. .+..+.+..+|+
T Consensus 67 ~A~~~~~~al~~~P~----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l~ 140 (765)
T PRK10049 67 NSLTLWQKALSLEPQ----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHHH
Confidence 466788888888775 6778888888888899999999999999999999999 9888776664 456778999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q 013667 83 RATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~ 104 (438)
+++...|....+|..++..+..
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999998888776553
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.98 E-value=5.5e-07 Score=88.38 Aligned_cols=235 Identities=10% Similarity=0.032 Sum_probs=148.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccchhHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS----SDLWLDYTQYLDKTLKVGNVVR 78 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~----~~lW~~Y~~~l~~~~~~~~~~~ 78 (438)
++...|+.++...|. +...|...+.+....|+++.+..+|++++...+.. ...|...+..+. ..++.+.+.
T Consensus 53 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~ 127 (389)
T PRK11788 53 KAIDLFIEMLKVDPE----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAE 127 (389)
T ss_pred HHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHH
Confidence 356678888877664 66778888888888888888888888888753332 245555555444 334667788
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHH-----HHHHHHHH---------HHHHHHHh
Q 013667 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE-----EYLDLFLT---------RIDGLRRR 144 (438)
Q Consensus 79 ~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~-----~~~~~~~~---------~~~~l~rr 144 (438)
.+|++++...|.....+..++..+.. .+..+++..+|.+++...+.... .+..+-.. -...+. +
T Consensus 128 ~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-~ 205 (389)
T PRK11788 128 ELFLQLVDEGDFAEGALQQLLEIYQQ-EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK-K 205 (389)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH-H
Confidence 88888888777777777776664443 56777888888887765433111 11111000 000111 1
Q ss_pred hhc--ccccchh---hcHHHHHHHHHHHHHHHhhhhcCCchh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH
Q 013667 145 ILF--SGEVEGV---LDYSLIRETFQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 145 ~~~--~~~~~~~---~~~~~~r~~f~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
+.. ......+ ...-...+-+++|..++..+....+.. ..++...+..+...| +++.|...+++++...|+...
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG-DEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchH
Confidence 110 0110000 011111233456666666655433322 345666777777888 899999999999999887644
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 219 ~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
....+.+....|+++.|..+|++++..
T Consensus 285 -~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 285 -LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 478888888999999999999999984
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=2.2e-07 Score=95.33 Aligned_cols=213 Identities=9% Similarity=-0.099 Sum_probs=143.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHH---------hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQ---------SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~---------~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~ 73 (438)
+|...|+++|...|. +...|...+.... ..++++.+...+++||...|.++..|..+...+... ++
T Consensus 279 ~A~~~~~~Al~ldP~----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-g~ 353 (553)
T PRK12370 279 QALKLLTQCVNMSPN----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH-SE 353 (553)
T ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cC
Confidence 467788999988875 4445543333211 123478899999999999999999999887766543 46
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccch
Q 013667 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (438)
Q Consensus 74 ~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~ 153 (438)
.+.+...|++|++..|.+...|..+...+.. .+..+++...|++++...+.....+..+...+ +.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~--~~------------ 418 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWIT--YY------------ 418 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH--Hh------------
Confidence 7789999999999999999999887765554 67789999999999987766432221111000 00
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhcCC-chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc
Q 013667 154 VLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (438)
Q Consensus 154 ~~~~~~~r~~f~~a~~~l~~~~~~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~ 232 (438)
..-+++|+..+...+... +.....+...+.+....| +.+.|+..+.+++...|.....+..........|
T Consensus 419 -------~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G-~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 419 -------HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG-KHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred -------ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC-CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 011334444433333222 223345666777777788 8999999999988778877766666655555555
Q ss_pred HHHHHHHHHHHHh
Q 013667 233 INEARSIYKRCYS 245 (438)
Q Consensus 233 ~~~ar~i~~ral~ 245 (438)
+.+...+++.+.
T Consensus 490 -~~a~~~l~~ll~ 501 (553)
T PRK12370 490 -ERALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHHH
Confidence 377777777554
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.98 E-value=6.4e-09 Score=97.34 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDF--PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~--p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
....++.+....|+++.+..++.+++... |.++.+|..++.... ..++.+.+..+|++.+..-+........++..+
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQLL 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 34567888888999999999998877665 899999999988655 445677899999999988777777777777642
Q ss_pred HHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch
Q 013667 103 ERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (438)
Q Consensus 103 e~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (438)
..++.+.+..+++++...... .+..++.++. +. .++..+...+.++...- ..+.
T Consensus 89 --~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~--------~~---------~~~~~~~~~l~~~~~~~-----~~~~ 144 (280)
T PF13429_consen 89 --QDGDPEEALKLAEKAYERDGDPRYLLSALQLYY--------RL---------GDYDEAEELLEKLEELP-----AAPD 144 (280)
T ss_dssp -------------------------------H-HH--------HT---------T-HHHHHHHHHHHHH-T--------T
T ss_pred --ccccccccccccccccccccccchhhHHHHHHH--------HH---------hHHHHHHHHHHHHHhcc-----CCCC
Confidence 356677787888777654322 1222222221 11 45666667776655321 1234
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~ 260 (438)
...+|..++.++...| +.+.|..+|+++++.+|++..++..++.+....|+.+.++.++....... ++.| .+|..+
T Consensus 145 ~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~-~~~~~l 220 (280)
T PF13429_consen 145 SARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP-DLWDAL 220 (280)
T ss_dssp -HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC-CHCHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH-HHHHHH
Confidence 5568999999999999 89999999999999999999999999999999999999999998887632 2223 466666
Q ss_pred HHHHHHhCCHHHH
Q 013667 261 LRFEREYGTLEDF 273 (438)
Q Consensus 261 ~~fE~~~G~~~~~ 273 (438)
.......|+.+.-
T Consensus 221 a~~~~~lg~~~~A 233 (280)
T PF13429_consen 221 AAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHT-HHHH
T ss_pred HHHhccccccccc
Confidence 6666666765443
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.98 E-value=5.1e-07 Score=97.22 Aligned_cols=99 Identities=6% Similarity=-0.057 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
+...|..++.+... |.+..+...|.+++...|.+.. .+..+..+. ..+..+.+...|++++..-|. ...|......
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~-~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAY-QVEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHH-HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 44566666665554 5666666666666666665322 222222222 233455566666666554333 3345544443
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcc
Q 013667 102 LERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
+.. .++.+++...|++++...+.
T Consensus 552 ll~-~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 552 AQA-AGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred HHH-CCCHHHHHHHHHHHHhcCCc
Confidence 332 45566666666666655443
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.2e-09 Score=92.46 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=48.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.++|-|.|||.+++|++|+++|.+||.|.++.|++|+.||.+||||||
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFV 236 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFV 236 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEE
Confidence 357889999999999999999999999999999999999999999999998
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.9e-09 Score=95.36 Aligned_cols=49 Identities=35% Similarity=0.531 Sum_probs=46.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.=+||||+-|++.++|..|+..|+.||+|..|+||.|+.||+++|||||
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFI 148 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFI 148 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEE
Confidence 3459999999999999999999999999999999999999999999997
No 46
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.89 E-value=4.4e-09 Score=101.92 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.+|||+|||+++++++|+++|++||.|.+++|+.|+.||++||||||
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEE
Confidence 44568999999999999999999999999999999999889999999997
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.3e-09 Score=101.09 Aligned_cols=54 Identities=33% Similarity=0.496 Sum_probs=50.2
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+...+.+.||||.||||++|++.|.+.|++||+|..+.||.++.||+++|.|||
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv 339 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFV 339 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEE
Confidence 344567789999999999999999999999999999999999999999999997
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=5.9e-07 Score=84.64 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=136.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.++..|+.+|..+|. +..+|...+......|+++.+...|+++|..+|.+...|...+..+.. .+..+.+...|+
T Consensus 82 ~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~~ 156 (296)
T PRK11189 82 LARNDFSQALALRPD----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 467789999998886 788999999999999999999999999999999999999998877664 456788999999
Q ss_pred HHHHcCCCCH--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHH
Q 013667 83 RATKNCPWVG--ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (438)
Q Consensus 83 rAl~~~p~~~--~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (438)
+++...|... .+|... .+ ..+..+++...|.+++....+..+.. .+...+ + .++..
T Consensus 157 ~al~~~P~~~~~~~~~~l---~~-~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~---l-------------g~~~~- 214 (296)
T PRK11189 157 AFYQDDPNDPYRALWLYL---AE-SKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFY---L-------------GKISE- 214 (296)
T ss_pred HHHHhCCCCHHHHHHHHH---HH-ccCCHHHHHHHHHHHHhhCCccccHH-HHHHHH---c-------------cCCCH-
Confidence 9999999875 355432 22 34567888888877664322211111 000000 0 01100
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHh
Q 013667 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIE 229 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-~~~~~W~~y~~~e~~ 229 (438)
...+..+...+.......+.....|.+.+.+....| +++.|+..|++++..+| +.++.=...++++..
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g-~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 215 ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG-DLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 023333333222222112344568888999999999 89999999999999976 555554455555544
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=1.4e-06 Score=75.58 Aligned_cols=180 Identities=17% Similarity=0.154 Sum_probs=141.1
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHH
Q 013667 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~ 113 (438)
...|++..+..-+|.||...|.++..|.--+.+... .+.++.+..-|++|+..-|..+++-.+|--||=. .+.++++.
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~ 123 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-LGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAM 123 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHH
Confidence 457999999999999999999999999999887664 4577889999999999999999999999887776 45889999
Q ss_pred HHHHHHHhCCcc-cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q 013667 114 TVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (438)
Q Consensus 114 ~i~~ral~~~~~-~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (438)
.-|++|+..+.- ... ..|....-.-
T Consensus 124 q~F~~Al~~P~Y~~~s------------------------------------------------------~t~eN~G~Ca 149 (250)
T COG3063 124 QQFERALADPAYGEPS------------------------------------------------------DTLENLGLCA 149 (250)
T ss_pred HHHHHHHhCCCCCCcc------------------------------------------------------hhhhhhHHHH
Confidence 999999975421 000 0111111111
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 013667 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (438)
.+.| +.+.|+..|+++|..+|+....-+..++.+...|++-.||..+++...+. . ..-+.+| --++++...|+.+.
T Consensus 150 l~~g-q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~-~~A~sL~-L~iriak~~gd~~~ 225 (250)
T COG3063 150 LKAG-QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG-G-AQAESLL-LGIRIAKRLGDRAA 225 (250)
T ss_pred hhcC-CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc-c-ccHHHHH-HHHHHHHHhccHHH
Confidence 3556 78999999999999999998888899999999999999999999988742 2 3334444 56789999999665
Q ss_pred H
Q 013667 273 F 273 (438)
Q Consensus 273 ~ 273 (438)
.
T Consensus 226 a 226 (250)
T COG3063 226 A 226 (250)
T ss_pred H
Confidence 4
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.87 E-value=5.6e-07 Score=96.93 Aligned_cols=241 Identities=12% Similarity=-0.040 Sum_probs=171.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|..++...|. +. .....+......|+++.+...|++++...|. ...|...+..+.. .++.+.+...|.
T Consensus 494 eAi~a~~~Al~~~Pd----~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~-~Gd~~eA~~~l~ 566 (987)
T PRK09782 494 VALYAWLQAEQRQPD----AW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQA-AGNGAARDRWLQ 566 (987)
T ss_pred HHHHHHHHHHHhCCc----hH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 355667888877774 22 2333344445789999999999998777555 4568888776664 456777999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (438)
+++...|....++......++ ..+..+++...|++++...+. ...+..+-..+ .+. .++.....
T Consensus 567 qAL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l-----~~l---------G~~deA~~ 630 (987)
T PRK09782 567 QAEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPS-ANAYVARATIY-----RQR---------HNVPAAVS 630 (987)
T ss_pred HHHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH-----HHC---------CCHHHHHH
Confidence 999998887776665433233 357899999999999987764 44333322211 111 33334444
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013667 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~r 242 (438)
.|.+++. ..|....++..++.+....| +.+.|..+|++++..+|++..+|..........|+++.|...|++
T Consensus 631 ~l~~AL~-------l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 631 DLRAALE-------LEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHH-------hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555444 35666678888888888888 899999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013667 243 CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 243 al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
++.. . +..-.|-..+-.++..-.+......++
T Consensus 703 Al~l--~-P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 703 VIDD--I-DNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHhc--C-CCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9973 2 234456666666666666655554444
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.87 E-value=3.5e-09 Score=100.68 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.|+.+|+++|||||
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFV 154 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFV 154 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEE
Confidence 3456789999999999999999999999999999999999999999999998
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.80 E-value=5.6e-09 Score=75.42 Aligned_cols=44 Identities=34% Similarity=0.628 Sum_probs=42.1
Q ss_pred EEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 394 v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
|||+|||.++|+++|+++|++||.|..+.++.+ .+|+++|||||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V 44 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFV 44 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEE
Confidence 799999999999999999999999999999998 68999999997
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=98.80 E-value=4e-06 Score=86.10 Aligned_cols=203 Identities=9% Similarity=-0.108 Sum_probs=138.7
Q ss_pred hHhHHHHHHHHHHHHh--c---CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHh--h------ccchhHHHHHHHHHHH
Q 013667 20 SEKFQQYMIYLKYEQS--S---GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK--T------LKVGNVVRDVYSRATK 86 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~--~---g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~--~------~~~~~~~~~i~erAl~ 86 (438)
+++++.|..|+.-... . ++.+.++.+|++|+...|.+...|...+..... . .+..+.+...+++|+.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 3467777777764322 1 245789999999999999999988665542211 1 1234678999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHH
Q 013667 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~ 166 (438)
.-|.....|..+...+. ..+..+++...|++|+...+.....+..+-..+. .. .+++.....|++
T Consensus 333 ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-----~~---------G~~~eAi~~~~~ 397 (553)
T PRK12370 333 LDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-----MA---------GQLEEALQTINE 397 (553)
T ss_pred cCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HC---------CCHHHHHHHHHH
Confidence 99999999988776444 4677899999999999888775544332221110 10 334444455555
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~-~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
++.. .+.....+...+.+....| +++.|...+++++... |+....+.....+....|+++.|+..+.+.+.
T Consensus 398 Al~l-------~P~~~~~~~~~~~~~~~~g-~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 398 CLKL-------DPTRAAAGITKLWITYYHT-GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhc-------CCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5443 3332222222233344566 7999999999999884 77778787788888889999999999998765
No 54
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.77 E-value=9.3e-09 Score=103.31 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=47.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||||||+++++++|+++|..||.|.+|+++.|+.+|+++|||||
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFV 154 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFV 154 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEE
Confidence 4579999999999999999999999999999999999999999999997
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=9.9e-09 Score=92.04 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=43.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....|+|+||||...+.||+.+|.+||.|.+|.|+.+ +.| |||||||
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFV 141 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFV 141 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceE
Confidence 4458999999999999999999999999999999997 555 8999998
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.74 E-value=2.3e-06 Score=74.27 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=100.4
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.|+..+|.+|...|. .+..|..-+.+-...|..+.+..-|++||...|.+.++-.+|.-||-..+ .++.+..-|+
T Consensus 53 ~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg-~~~eA~q~F~ 127 (250)
T COG3063 53 QAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG-RPEEAMQQFE 127 (250)
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC-ChHHHHHHHH
Confidence 578899999999886 78899999988899999999999999999999999999999999998765 6788999999
Q ss_pred HHHH--cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013667 83 RATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 83 rAl~--~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
+|+. +.|.-...|.+... +-...+..+.++..|+|+|...+..
T Consensus 128 ~Al~~P~Y~~~s~t~eN~G~-Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 128 RALADPAYGEPSDTLENLGL-CALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHHhCCCCCCcchhhhhhHH-HHhhcCCchhHHHHHHHHHHhCcCC
Confidence 9998 45656677777544 4444677889999999999876653
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.74 E-value=3.3e-05 Score=82.54 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=149.3
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 013667 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erA 84 (438)
-..|+..+...|. ....|...+......|++..+..+|+++|...|.++.+|...+..+... +..+.+...++++
T Consensus 35 ~~~~~~~~~~~~~----~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~-g~~~eA~~~l~~~ 109 (765)
T PRK10049 35 ITVYNRYRVHMQL----PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA-GQYDEALVKAKQL 109 (765)
T ss_pred HHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 3456666653443 4556888888889999999999999999999999999999888877644 5667899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHH---------HHHHHhhhcc-c---cc
Q 013667 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRILFS-G---EV 151 (438)
Q Consensus 85 l~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~---------~~l~rr~~~~-~---~~ 151 (438)
+...|.... |......+. ..+..+.+...|++++...+.....++.+-.... ..+. ++... . ..
T Consensus 110 l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~-~~~~~p~~~~~l 186 (765)
T PRK10049 110 VSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID-DANLTPAEKRDL 186 (765)
T ss_pred HHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH-hCCCCHHHHHHH
Confidence 999999999 988877555 4678899999999999887765443332211110 0010 00000 0 00
Q ss_pred chhhcHHHHHH-------------HHHHHHHHHhhhhc---CCchh----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013667 152 EGVLDYSLIRE-------------TFQRASDYLSEQMK---NTDGL----LRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 152 ~~~~~~~~~r~-------------~f~~a~~~l~~~~~---~~~~~----~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
........++. ..++|+..+...+. ..+.. ........-.....+ +++.|+..|++++.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g-~~~eA~~~~~~ll~ 265 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD-RYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhc
Confidence 00000111111 11445544443332 11111 111111111223456 89999999999998
Q ss_pred hc---cchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 212 IS---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 212 ~~---~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.. |.....|+ .......|+++.|..+|++++..
T Consensus 266 ~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 266 EGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred cCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhc
Confidence 74 56666775 66777889999999999999863
No 58
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.73 E-value=1.8e-06 Score=81.98 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-----------chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHH
Q 013667 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLK-----------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (438)
Q Consensus 43 ~~~yERal~~~p~~~~lW~~Y~~~l~~~~~-----------~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~ 111 (438)
..-|+|.|..+|.+++.|+.|+.|-..... ..+.-..||+|||+++|.+..||..|+..... ..+.+.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 346899999999999999999998765432 12456789999999999999999999997765 347788
Q ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q 013667 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (438)
Q Consensus 112 ~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (438)
+...+++++...+. ...+|..|+++...++.. ..+..++.+|.+|+..+.......
T Consensus 84 l~~~we~~l~~~~~----~~~LW~~yL~~~q~~~~~-------f~v~~~~~~y~~~l~~L~~~~~~~------------- 139 (321)
T PF08424_consen 84 LAKKWEELLFKNPG----SPELWREYLDFRQSNFAS-------FTVSDVRDVYEKCLRALSRRRSGR------------- 139 (321)
T ss_pred HHHHHHHHHHHCCC----ChHHHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHHhhccc-------------
Confidence 88889988876444 346777777666544321 346677788888877765432111
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Q 013667 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (438)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~ 248 (438)
.. . .....-.+. ....+.+.+..|+...|..+.|.++++-.+..++
T Consensus 140 ---~~-~-~~~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 ---MT-S-HPDLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred ---cc-c-ccchhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 00 0 000111111 1245667888888888888888888888887644
No 59
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.70 E-value=2.6e-08 Score=99.98 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=46.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|||+|||+++++++|+++|+.||.|.+++|++| .+|++||||||
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV 104 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFV 104 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEE
Confidence 34689999999999999999999999999999999999 89999999997
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2.6e-06 Score=82.90 Aligned_cols=235 Identities=12% Similarity=0.091 Sum_probs=143.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHH
Q 013667 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~ 113 (438)
.++|++..+..+||-||..+|.+.+.|......-... ..-..++..+.||+..-|....+-...+. ...+.+....+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl~LdP~NleaLmaLAV-SytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCLELDPTNLEALMALAV-SYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHHhcCCccHHHHHHHHH-HHhhhhhHHHHH
Confidence 3456677777777777777777777776655433322 22233666677777766765554444332 222233334455
Q ss_pred HHHHHHHhCCcc--------------------cHHHHHHHHHHHHHHHHHhhhcccccchhhcHH-------HHHHHHHH
Q 013667 114 TVFEKSLLCAFS--------------------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS-------LIRETFQR 166 (438)
Q Consensus 114 ~i~~ral~~~~~--------------------~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~-------~~r~~f~~ 166 (438)
..+++-+...|+ .......+-..+++-.+ .... ..+ .|+. .+-.-|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~--~~~~-~~D--pdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR--QLPT-KID--PDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH--hCCC-CCC--hhHHhhhHHHHhcchHHHH
Confidence 555554422111 11111222222221111 1110 000 1111 23466788
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
|+++|..++...|..+.+|..+.-....-. ..+.|.+.|.+|+...|..+..|....--.+..|.+.+|...|=.||..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 888888888778888899999987776655 7889999999999999999999988888889999999999999999964
Q ss_pred ccC----CCC---hHHHHHHHHHHHHHhCCHHHHHHH
Q 013667 247 RFT----GTG---SEDICHAWLRFEREYGTLEDFDHS 276 (438)
Q Consensus 247 ~~~----~~~---~~~i~~~~~~fE~~~G~~~~~~~a 276 (438)
.-. .+. .+.||.....+-...+..+.+..+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 211 111 367888777666667766655443
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.69 E-value=2.4e-08 Score=72.17 Aligned_cols=44 Identities=41% Similarity=0.655 Sum_probs=39.8
Q ss_pred EEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 394 v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
|||+|||+++++++|+++|+.+|.|..+++..++. |.++|+|||
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v 44 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFV 44 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEE
Confidence 79999999999999999999999999999999965 999999997
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.68 E-value=2.5e-05 Score=69.96 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 013667 57 SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136 (438)
Q Consensus 57 ~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~ 136 (438)
...+...+..... .++.+.+...|++++...|.....|......+. ..++.+.+...|++++...+.....+..+-..
T Consensus 31 ~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLE-QGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4566666655543 356778999999999999998888888776444 46888999999999998766543322221111
Q ss_pred HHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 013667 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (438)
Q Consensus 137 ~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (438)
+ ... .++......|.+++... ..+.....+...+.+....| +++.|...|++++...|+.
T Consensus 109 ~-----~~~---------g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 109 L-----CQQ---------GKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAG-DFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred H-----HHc---------ccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCC
Confidence 1 000 23444444455544321 12233456777788888888 8999999999999999998
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 013667 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS 276 (438)
Q Consensus 217 ~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a 276 (438)
...|..++.+....|+++.|..++++++.. .++.+. .+..........|+.+.....
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAE-SLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHHHhhHHHHHHH
Confidence 889999999999999999999999999974 333343 333556666667776665543
No 63
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=3.6e-05 Score=72.82 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~ 101 (438)
-.++|.-+-......+..++|..+++.+|..+|.+..+|..-...+..-+...+.+...+++++...|.+..+|......
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 33455555555556778899999999999999999999998887776543345678999999999999999999987665
Q ss_pred HHHccCC-HHHHHHHHHHHHhCCcccHHHH--HHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCC
Q 013667 102 LERSRAS-EEEISTVFEKSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (438)
Q Consensus 102 le~~~~~-~~~~~~i~~ral~~~~~~~~~~--~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~ 178 (438)
++..+.. .+.....+.+++...+.++..+ ..+.+. ++ ..++++++++.+++..+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~-------~l----------------~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR-------TL----------------GGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH-------Hh----------------hhHHHHHHHHHHHHHHC
Confidence 6654332 2556778889998777644332 221111 11 23566666666666555
Q ss_pred chhHHHHHHHHHHHHHc---CC---CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc----ccHHHHHHHHHHHHh
Q 013667 179 DGLLRLYAYWAHLEQSM---GK---DMVSARGVWERLLKISGAMLEAWQSYISMEIEL----DHINEARSIYKRCYS 245 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~---~~---~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~----g~~~~ar~i~~ral~ 245 (438)
+.....|..-..+.... ++ ..+.......++|...|++...|.....+.... +....|...+..++.
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 55566777655444333 21 124677778899999999999997777766663 334557777887775
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=7.3e-06 Score=78.34 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=153.6
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 013667 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i 115 (438)
.|+...++.-|..+|...|..+.+++.-...+.. ..+.+.....|..|.+..|..+++|....+ +....+.++.+..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d-~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ-m~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD-ENQSEKMWKDFNKAEDLDPENPDVYYHRGQ-MRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh-hhccHHHHHHHHHHHhcCCCCCchhHhHHH-HHHHHHHHHHHHHH
Confidence 4788889999999999999999986665544432 345677889999999999999999998877 33345678899999
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc
Q 013667 116 FEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195 (438)
Q Consensus 116 ~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~ 195 (438)
|++|+...+.+.-.|+.+.... | |. ..+......|+.+.. .+|.+.+++.++++++...
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~--Y---r~---------~k~~~~m~~Fee~kk-------kFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCAL--Y---RQ---------HKIAESMKTFEEAKK-------KFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHH--H---HH---------HHHHHHHHHHHHHHH-------hCCCCchHHHHHHHHHhhH
Confidence 9999998887666666543211 1 11 123334455666554 3577778999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccc------hHH--HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013667 196 GKDMVSARGVWERLLKISGA------MLE--AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (438)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~~~------~~~--~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (438)
+ +++.|.+.|..++...|. +.. +....+.+- =.+++..|..++.+|+.. .+..+.-.....+||...
T Consensus 476 q-qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 476 Q-QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL---DPKCEQAYETLAQFELQR 550 (606)
T ss_pred H-hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHH
Confidence 9 899999999999999776 222 222222222 127999999999999982 345677788889999999
Q ss_pred CCHHH
Q 013667 268 GTLED 272 (438)
Q Consensus 268 G~~~~ 272 (438)
|+++.
T Consensus 551 ~~i~e 555 (606)
T KOG0547|consen 551 GKIDE 555 (606)
T ss_pred hhHHH
Confidence 98654
No 65
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.65 E-value=9.8e-08 Score=85.75 Aligned_cols=136 Identities=23% Similarity=0.374 Sum_probs=106.0
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc-------------C---------ChhhHHHHHHHHHhcCCCCHHH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-------------G---------DPGRVQLLYERAITDFPVSSDL 59 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~-------------g---------~~~~~~~~yERal~~~p~~~~l 59 (438)
.+.|..||..|.+... ...-++.||.+|-.. | -+.++..+|.|+.-.+|.++.+
T Consensus 34 vktRr~fE~rL~rr~~----klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~ 109 (435)
T COG5191 34 VKTRRKFELRLQRREK----KLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKI 109 (435)
T ss_pred HHHHHHHHHHHhcccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHH
Confidence 3679999999988765 667789999987532 1 1345667889999999999999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc---cHHHHHHHHHH
Q 013667 60 WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLT 136 (438)
Q Consensus 60 W~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~---~~~~~~~~~~~ 136 (438)
|.+|+.|+... +....+-.||..+++..|...+||+..+.+-.....+++.++.+|.+++...+. .|.+|..+.+.
T Consensus 110 w~~y~~Y~~k~-k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 110 WSQYAAYVIKK-KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 99999999865 355668899999999999999999885553333468899999999999977655 46667776666
Q ss_pred HHHHHH
Q 013667 137 RIDGLR 142 (438)
Q Consensus 137 ~~~~l~ 142 (438)
++.-|.
T Consensus 189 yiTKL~ 194 (435)
T COG5191 189 YITKLI 194 (435)
T ss_pred HHHHHH
Confidence 664443
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.64 E-value=3.9e-06 Score=85.57 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=143.8
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH------H
Q 013667 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG------E 93 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~------~ 93 (438)
|.+++.|....++-.+.|++.+|+.+|-|||..+|.+..+-..++..+.+. ++...+...|.+.+..+|.+. .
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 447789999999999999999999999999999999988888888877654 466678999999999999433 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-----cHHHHHHHHHHHHHHHH------H-hh--hccccc--------
Q 013667 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLTRIDGLR------R-RI--LFSGEV-------- 151 (438)
Q Consensus 94 lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-----~~~~~~~~~~~~~~~l~------r-r~--~~~~~~-------- 151 (438)
+|.. +.++... ...+.+..+++.++..... ....+..+++..-.+-+ + +. ...+..
T Consensus 283 i~~~-~~~~~~~-~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 283 IRRV-AHYFITH-NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHH-HHHHHHh-hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 4432 3433332 3337788888888874332 34445555554322111 0 00 000000
Q ss_pred ------------chhhcHHHHHH---HH-------HHHH-HHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013667 152 ------------EGVLDYSLIRE---TF-------QRAS-DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWER 208 (438)
Q Consensus 152 ------------~~~~~~~~~r~---~f-------~~a~-~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~ 208 (438)
+...++..++. .+ ..++ .++............++...++.+...| .+..|..+|-.
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~-~~~~Al~~l~~ 439 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG-KYKEALRLLSP 439 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 00001111011 00 0111 1111100011223456666666666666 67777777777
Q ss_pred HHHhccch-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013667 209 LLKISGAM-LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 209 ~l~~~~~~-~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
+++..+.+ ..+|...+.+++..|.++.|...|+++|.. .++ ..++--.....-...|+.+....++
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~-~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APD-NLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC-chhhhhhHHHHHHhcCCHHHHHHHH
Confidence 77665443 357777777777777777777777777762 222 2233333444444455555443333
No 67
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.63 E-value=3.9e-08 Score=93.59 Aligned_cols=48 Identities=27% Similarity=0.476 Sum_probs=45.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||.++|+++|+++|++||.|..++|+.++.+|+++|||||
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV 240 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFV 240 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEE
Confidence 358999999999999999999999999999999999889999999997
No 68
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.63 E-value=4e-08 Score=98.79 Aligned_cols=48 Identities=8% Similarity=0.179 Sum_probs=46.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+++++++|+++|+.||.|.+++|+.|+.+|++||||||
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFV 251 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFI 251 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEE
Confidence 469999999999999999999999999999999999889999999997
No 69
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.8e-08 Score=90.80 Aligned_cols=51 Identities=31% Similarity=0.485 Sum_probs=48.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+.+..++|||.+|..++|.+|+.+|++||.|.+|.|++|+.||.++|||||
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv 81 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFV 81 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEE
Confidence 356679999999999999999999999999999999999999999999997
No 70
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=5.4e-08 Score=85.11 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=47.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....||||.|...++.++|++.|.+||+|.+++|++|..|+||||||||
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFV 109 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFV 109 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEE
Confidence 3568999999999999999999999999999999999999999999998
No 71
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.59 E-value=6.6e-08 Score=97.09 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=48.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+.++|||+|||+.+++.+|+++|+.||.|.+|+|+.|+.+|+++|||||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afV 136 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYV 136 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEE
Confidence 456779999999999999999999999999999999999999999999997
No 72
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=6.8e-08 Score=90.23 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=48.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+|.||||.||.++.|++|..+|+..|+|-++|||+|+.+|.+||||||
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFV 130 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFV 130 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEE
Confidence 67889999999999999999999999999999999999999999999998
No 73
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.59 E-value=0.00014 Score=74.50 Aligned_cols=269 Identities=15% Similarity=0.137 Sum_probs=159.9
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
|-..+.+.|+.+|. +...|...+..-+..|+...+...+=-|--.+|.+.++|....++.. ..++.+.++-+|.|
T Consensus 158 A~~i~~EvIkqdp~----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 158 AEEILMEVIKQDPR----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHhCcc----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHH
Confidence 44567777888886 78889999998899999988888777777789999999999999776 44678889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-c-------HHHHHHHHHHHHHH------HHHhhhccc
Q 013667 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-T-------FEEYLDLFLTRIDG------LRRRILFSG 149 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-~-------~~~~~~~~~~~~~~------l~rr~~~~~ 149 (438)
||+..|..-.+...++..+. ..+....+...|.+++...++ . ...++..+.+..+. +.--+....
T Consensus 233 AI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99999877665556666444 467788899999999977663 1 11122222222111 000000000
Q ss_pred ccchhhcHHHH------HHHHHHHHHHHhhhhc----------------------------CCchhHHHHHHHHHHHHHc
Q 013667 150 EVEGVLDYSLI------RETFQRASDYLSEQMK----------------------------NTDGLLRLYAYWAHLEQSM 195 (438)
Q Consensus 150 ~~~~~~~~~~~------r~~f~~a~~~l~~~~~----------------------------~~~~~~~l~~~~a~~e~~~ 195 (438)
......++..+ ...++++...+...-. ..+..+.+ ....+-.-+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v--~rl~icL~~ 389 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV--IRLMICLVH 389 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh--HhHhhhhhc
Confidence 00001112111 2333444333211110 00111122 111111111
Q ss_pred CCCHHHHHHHHHHHHHhc--c-chHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 013667 196 GKDMVSARGVWERLLKIS--G-AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (438)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~--~-~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (438)
.+..+..-.+....+..+ + +.+++.+..++..+..|.+..|-.+|-..+.. +......+ |...-+++-.++.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~--~~~~~~~v---w~~~a~c~~~l~e 464 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR--EGYQNAFV---WYKLARCYMELGE 464 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC--ccccchhh---hHHHHHHHHHHhh
Confidence 213344444555555543 3 34578889999999999999999999999873 33333444 4555555555555
Q ss_pred HHHHHHhhhhhHH
Q 013667 273 FDHSVQKVTPRLE 285 (438)
Q Consensus 273 ~~~a~~~~~~~l~ 285 (438)
++.|++-+.+.+.
T Consensus 465 ~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 465 YEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHHHHh
Confidence 6666655555554
No 74
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.4e-05 Score=74.48 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=86.7
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHc
Q 013667 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (438)
Q Consensus 8 ~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~ 87 (438)
|..+|+-+|. ...+|.--+---....+...|+.-|.|||..||.+...|....+... -++-+.-+.--|+||+..
T Consensus 353 FkRALkLNp~----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 353 FKRALKLNPK----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHhcCcc----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhc
Confidence 4444455554 56678533221123457888999999999999999999998887544 445566788999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013667 88 CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 88 ~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
-|++..+|.......++ .+..+++...|.+|+..+...
T Consensus 428 kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred CCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhccccc
Confidence 99999999998886665 677899999999999876653
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=6.4e-06 Score=74.91 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=115.2
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHccCCHHHH
Q 013667 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE----LWVRSLLSLERSRASEEEI 112 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~----lW~~y~~~le~~~~~~~~~ 112 (438)
..|.++..+|-..|..+|.++.+-..-+...+ .++..+.+.++|.++++..|...+ |=..|. ..++.+.+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-----Y~~~PE~A 343 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-----YDNNPEMA 343 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-----cCCChHHH
Confidence 44555555666666666665555555554333 223334455566666555443221 111211 13445555
Q ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Q 013667 113 STVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (438)
Q Consensus 113 ~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (438)
...|.|.|+.+..+.+.+..+-++.. + -..++.+-..|++|+....+ .+...++|-....+.
T Consensus 344 lryYRRiLqmG~~speLf~NigLCC~-y-------------aqQ~D~~L~sf~RAlstat~----~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 344 LRYYRRILQMGAQSPELFCNIGLCCL-Y-------------AQQIDLVLPSFQRALSTATQ----PGQAADVWYNLGFVA 405 (478)
T ss_pred HHHHHHHHHhcCCChHHHhhHHHHHH-h-------------hcchhhhHHHHHHHHhhccC----cchhhhhhhccceeE
Confidence 55566666555554444443332211 0 02334455677777665421 233457898888887
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
...| |+..|...|.-+|..++++.+.....+-++.+.|+++.||.+|..|-..
T Consensus 406 V~iG-D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 406 VTIG-DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred Eecc-chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7888 9999999999999999999999999999999999999999999998763
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.53 E-value=0.00019 Score=78.37 Aligned_cols=265 Identities=8% Similarity=-0.011 Sum_probs=165.5
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
.++..|++....... + +...|...|...-+.|+++.+..+|++..... ..+...|...+..+-.. +..+.+..+|
T Consensus 490 ~A~~vf~eM~~~Gv~--P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf 565 (1060)
T PLN03218 490 AMFEVFHEMVNAGVE--A-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVL 565 (1060)
T ss_pred HHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 467778877765421 1 45688888888888899999999998887653 34677788888766644 4667788999
Q ss_pred HHHHHc----CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc----cHHHHHHHHHHH-----HHHHHHhhhcc
Q 013667 82 SRATKN----CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTR-----IDGLRRRILFS 148 (438)
Q Consensus 82 erAl~~----~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~----~~~~~~~~~~~~-----~~~l~rr~~~~ 148 (438)
++.... .| ....|...+..+-+ .+..+++..+|+.+...+.. .+...+..+... .-.+...+...
T Consensus 566 ~eM~~~~~gi~P-D~vTynaLI~ay~k-~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDP-DHITVGALMKACAN-AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCC-cHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 888752 24 34567766664444 67788899999988876542 222222222110 00011111111
Q ss_pred cccchhhcHHHHH------HHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHH
Q 013667 149 GEVEGVLDYSLIR------ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEA 219 (438)
Q Consensus 149 ~~~~~~~~~~~~r------~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~~ 219 (438)
...-+..-+..+. ..++.|..++..+... ..+....|...+..+.+.| +++.|.++|+.+... .|+ ...
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~Pd-vvt 721 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPT-VST 721 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCC-HHH
Confidence 0000000011111 1234555655555442 2334457777788888888 899999999988765 343 567
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013667 220 WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
|...|......|+++.|..+|+......+.+ ....+...+.-....|.++.....+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8899998889999999999999887643332 2345666666677777766555443
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.52 E-value=0.00023 Score=70.42 Aligned_cols=246 Identities=12% Similarity=0.027 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
.+.--+......|+++.+..+|++++...|.+. .+-..++...... ++.+.+...+++.++..|.+..++..+...+.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455556677999999999999999999885 6777788766644 56788999999999999999988888777444
Q ss_pred HccCCHHHHHHHHHHHHhCCcccHHHHHHHH-HHHHHHHH---H--------hhhc--c----cccc---hhhcHHHHHH
Q 013667 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLR---R--------RILF--S----GEVE---GVLDYSLIRE 162 (438)
Q Consensus 104 ~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~-~~~~~~l~---r--------r~~~--~----~~~~---~~~~~~~~r~ 162 (438)
..++.+.+..++.+.+..+......+..+- ..+.+.+. . .+.. . +... .+...-...+
T Consensus 199 -~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 199 -RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred -HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 477889999999998866433222221111 11111110 0 0000 0 0000 0000001112
Q ss_pred HHHHHHHHHhhhhcCCchhHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH--HHHHHHHHHHHhcccHHHH
Q 013667 163 TFQRASDYLSEQMKNTDGLLR----LYAYWAHLEQSMGKDMVSARGVWERLLKISGAML--EAWQSYISMEIELDHINEA 236 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~----l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~--~~W~~y~~~e~~~g~~~~a 236 (438)
-+++|...+...++..+.... +...+..+ ..+ +...+.+.++++++.+|++. .+...+..+....|+++.|
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~-~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPE-DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 345666666666654333321 23333322 223 77888888888888888888 7778888888888889999
Q ss_pred HHHHHH--HHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 237 RSIYKR--CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 237 r~i~~r--al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
+..|++ ++.. .+.++. +..+...-...|+.+...+...+
T Consensus 355 ~~~le~a~a~~~---~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 355 ADAFKNVAACKE---QLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHhHHhhc---CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999884 5542 233444 44777777777887666554444
No 78
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.7e-05 Score=75.82 Aligned_cols=220 Identities=13% Similarity=0.124 Sum_probs=146.4
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+-..|..+|.-.|. ....|+.....-....+.......|..|...+|.+++++..-..... -....+.+..=|++
T Consensus 345 a~~d~~~~I~l~~~----~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPA----FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQK 419 (606)
T ss_pred hhhhHHHHHhcCcc----cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHH
Confidence 44556667766653 23335554444455667888899999999999999999988876543 23456779999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHH
Q 013667 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (438)
|++.-|...--++...-.+.+ ...+++....|+.+...-|. ..+.+.++- +.|..+ .++......
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~-~~Evy~~fA---eiLtDq----------qqFd~A~k~ 484 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPN-CPEVYNLFA---EILTDQ----------QQFDKAVKQ 484 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCC-CchHHHHHH---HHHhhH----------HhHHHHHHH
Confidence 999999876666666655565 45788899999998864332 222222221 111101 344445555
Q ss_pred HHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (438)
Q Consensus 164 f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~r 242 (438)
|+.|+..-...-.. ...-.-+....+.+-++ + |+..|.+++.++++.+|..-.......+|+...|++++|..+|++
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~-d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E-DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchh-h-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66665532110000 00111123333333344 4 899999999999999999888899999999999999999999999
Q ss_pred HHh
Q 013667 243 CYS 245 (438)
Q Consensus 243 al~ 245 (438)
++.
T Consensus 563 sa~ 565 (606)
T KOG0547|consen 563 SAQ 565 (606)
T ss_pred HHH
Confidence 986
No 79
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.4e-05 Score=71.61 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=142.9
Q ss_pred hhhHhHHHHHhc-CCCCChHhHHHHHHHHHHH-HhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHhh-------
Q 013667 3 NARAHLEEQISR-QDLSDSEKFQQYMIYLKYE-QSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKT------- 70 (438)
Q Consensus 3 ~~R~~~E~~l~~-~~~~~~~~~~~w~~Y~~~e-~~~g~~~~~~~~yERal~~~p~~~---~lW~~Y~~~l~~~------- 70 (438)
+++..+|..+.. .|. ......++... ....|++.+..+||..+...|+.. ++..+-+-....+
T Consensus 245 e~~~k~e~l~~~gf~~-----~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPN-----SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHhccCCc-----cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 456777777766 443 22233344333 234588999999999999888644 3333322211110
Q ss_pred -----------------------ccchhHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCccc
Q 013667 71 -----------------------LKVGNVVRDVYSRATKNCPWVGELWVRSLL-SLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 71 -----------------------~~~~~~~~~i~erAl~~~p~~~~lW~~y~~-~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
.+..+++..-|+||++..|....+|.-.-- ++| ..+...+-+-|.+|+...+..
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE--mKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE--MKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH--hcccHHHHHHHHHHHhcCchh
Confidence 012356888899999999999999987442 445 356678888999999887775
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013667 127 FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVW 206 (438)
Q Consensus 127 ~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~ 206 (438)
+...+.+-.+|. .+ .--.-.---|++|..+ -|...++|...++.+.+++ .++.|.+.|
T Consensus 398 yRAWYGLGQaYe-im-------------~Mh~YaLyYfqkA~~~-------kPnDsRlw~aLG~CY~kl~-~~~eAiKCy 455 (559)
T KOG1155|consen 398 YRAWYGLGQAYE-IM-------------KMHFYALYYFQKALEL-------KPNDSRLWVALGECYEKLN-RLEEAIKCY 455 (559)
T ss_pred HHHHhhhhHHHH-Hh-------------cchHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 544444443331 00 0000111234555443 2334579999999999999 899999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 207 ERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 207 e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+++.....+..+....+++..+.++.+.|...|++.+..
T Consensus 456 krai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 456 KRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999875555566668889999999999999999999974
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.50 E-value=0.00027 Score=69.57 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=157.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013667 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
+.--.......|+++.+...|++|....|.+. ...+.-..+.. ..++.+.+...+++++...|.+.......+..+.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~- 198 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI- 198 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-
Confidence 34344444678999999999999999888875 33223233333 3457788999999999999999877777666443
Q ss_pred ccCCHHHHHHHHHHHHhCCcccHHHHHHHH-HHHHHHHHHhhhccc--c----c----chhh-c------HH---HHHHH
Q 013667 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSG--E----V----EGVL-D------YS---LIRET 163 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~~~~~~~~~~-~~~~~~l~rr~~~~~--~----~----~~~~-~------~~---~~r~~ 163 (438)
..++.+.+..++.+..........+.-.+. ..++..+.......+ . + .... + +. ...+-
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 467888999999888865443222222111 111111111000000 0 0 0000 0 00 01122
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
.+.|...+...++. +....+...|+++. .+ +.+.+.+..+..++.+|++..+.+.+..+....|+++.|+..|+++
T Consensus 279 ~~~A~~~L~~~l~~-~~~~~l~~l~~~l~--~~-~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 279 HDTAQQIILDGLKR-QYDERLVLLIPRLK--TN-NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHhhcc--CC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35566666666652 33445666777653 35 8999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
+.. .++ . ..+..+.......|..+.-..+..+
T Consensus 355 l~~--~P~-~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 355 LKQ--RPD-A-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred Hhc--CCC-H-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 983 222 2 3345678888888887665554443
No 81
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.49 E-value=1.1e-07 Score=91.98 Aligned_cols=47 Identities=36% Similarity=0.482 Sum_probs=46.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+.|||||+|++++++.|..+|+..|.|.+++++.|+.||+++|||||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~ 65 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFC 65 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeE
Confidence 79999999999999999999999999999999999999999999996
No 82
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.49 E-value=8.1e-05 Score=73.59 Aligned_cols=218 Identities=12% Similarity=0.017 Sum_probs=133.1
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHH---
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD--- 79 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~--- 79 (438)
.+...|+.++...|.. ...+-..+..+....|+++.+...+++.+...|.++.++..++...... ++.+.+..
T Consensus 136 ~A~~~l~~a~~~~p~~---~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~ 211 (409)
T TIGR00540 136 RANQHLEEAAELAGND---NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-GAWQALDDIID 211 (409)
T ss_pred HHHHHHHHHHHhCCcC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 3556666776666531 2334555667667778888888888888888888887766665544322 22222333
Q ss_pred -----------------------------------HHHHHHHcCC----CCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013667 80 -----------------------------------VYSRATKNCP----WVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 80 -----------------------------------i~erAl~~~p----~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
.+..+....| ....++..++..+. ..+..+.+..++++++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~-~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI-DCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH-HCCChHHHHHHHHHHH
Confidence 3333334444 35566666666333 3556677777777777
Q ss_pred hCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhH--HHHHHHHHHHHHcCCC
Q 013667 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL--RLYAYWAHLEQSMGKD 198 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~--~l~~~~a~~e~~~~~~ 198 (438)
...++.....+.++..+. .+. . .+...+...++++ ++..+... .+...++.+....+ +
T Consensus 291 ~~~pd~~~~~~~~l~~~~-----~l~-~------~~~~~~~~~~e~~-------lk~~p~~~~~~ll~sLg~l~~~~~-~ 350 (409)
T TIGR00540 291 KKLGDDRAISLPLCLPIP-----RLK-P------EDNEKLEKLIEKQ-------AKNVDDKPKCCINRALGQLLMKHG-E 350 (409)
T ss_pred hhCCCcccchhHHHHHhh-----hcC-C------CChHHHHHHHHHH-------HHhCCCChhHHHHHHHHHHHHHcc-c
Confidence 654443211111111000 000 0 1222233333333 33333333 67888999998888 8
Q ss_pred HHHHHHHHH--HHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 199 MVSARGVWE--RLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 199 ~~~ar~i~e--~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+++|++.|+ .+++..|+... +..+..+....|+.+.|+.+|++++..
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999 57777888766 448899999999999999999999864
No 83
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.48 E-value=2.3e-07 Score=94.58 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=46.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+|||||||+.+|+++|+++|..||.|..+.|+.++.+|+++|||||
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv 342 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFC 342 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEE
Confidence 4569999999999999999999999999999999999889999999997
No 84
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=2.6e-07 Score=80.36 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+..|||-||.++++|.-|.++|.+||.|..|++++|..|.++||||||
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFV 325 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 325 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEE
Confidence 455779999999999999999999999999999999999888999999997
No 85
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.46 E-value=5e-05 Score=74.74 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=136.0
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.++..|+.+....|.. ......--..+....|+++.+...+++++...|.++.+....+...... ++.+.+..++.
T Consensus 136 ~A~~~l~~A~~~~~~~---~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~ 211 (398)
T PRK10747 136 RANQHLERAAELADND---QLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILP 211 (398)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 4567788888776641 1222222355667789999999999999999999987666555544332 34444554444
Q ss_pred HHHHcC------------------------------------------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013667 83 RATKNC------------------------------------------PWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 83 rAl~~~------------------------------------------p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
+..+.. |....++..|+..+.. .+..+.+..++++++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~~~L~~~l 290 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 444433 2344455555553332 344455555555555
Q ss_pred hCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHH
Q 013667 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV 200 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~ 200 (438)
..++.. ..+.++. ++. ...+.+++..+....+..|....+...++++....+ ++.
T Consensus 291 ~~~~~~--~l~~l~~--------~l~--------------~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~-~~~ 345 (398)
T PRK10747 291 KRQYDE--RLVLLIP--------RLK--------------TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG-EWQ 345 (398)
T ss_pred hcCCCH--HHHHHHh--------hcc--------------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHH
Confidence 532221 0011110 000 022344555555555556667778999999999999 899
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 201 SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 201 ~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.|++.|+.++...|+... +..+.......|+.+.|..+|++++.
T Consensus 346 ~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 346 EASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998654 66788999999999999999999987
No 86
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.46 E-value=0.00037 Score=76.15 Aligned_cols=268 Identities=9% Similarity=-0.015 Sum_probs=174.5
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
.++..|+..+...... +...|...|...-+.|+++.+..+|+++.... ..+...|...|..+-+. +..+.+..+|
T Consensus 455 ~A~~lf~~M~~~Gl~p---D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf 530 (1060)
T PLN03218 455 GALRVLRLVQEAGLKA---DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 5677888877664321 45688999999999999999999999999864 34889999999877654 5678899999
Q ss_pred HHHHHc-CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--C--cc--cHHHHHHHHHHH-----HHHHHHhhhccc
Q 013667 82 SRATKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC--A--FS--TFEEYLDLFLTR-----IDGLRRRILFSG 149 (438)
Q Consensus 82 erAl~~-~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~--~--~~--~~~~~~~~~~~~-----~~~l~rr~~~~~ 149 (438)
++.... +......|...|..+-+ .+..+.+..+|+++... + +. .+...+..+... ...+.+.+....
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k-~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQ-SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999763 32356788888886665 67889999999998752 2 22 222233322110 001111111111
Q ss_pred ccchhhcHHHHH------HHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccchHHHHH
Q 013667 150 EVEGVLDYSLIR------ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQ 221 (438)
Q Consensus 150 ~~~~~~~~~~~r------~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~~W~ 221 (438)
......-+..+- ..++.|..++..+... ..+....|...+......+ +++.|.++|+.+.+. ..-+...|.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG-DLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 000000011111 2234566665554432 2233446677777777888 899999999999977 344567888
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013667 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (438)
Q Consensus 222 ~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~ 278 (438)
..+....+.|+++.|..+|+......+.+ ....|...+.-....|..+.....+.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999887543332 23557777777777777666555444
No 87
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.46 E-value=2.2e-06 Score=69.33 Aligned_cols=110 Identities=17% Similarity=0.348 Sum_probs=84.6
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc----CChhhHHHHHHHHHhcCCCC---------HHHHHHHHHHHH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS----GDPGRVQLLYERAITDFPVS---------SDLWLDYTQYLD 68 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~----g~~~~~~~~yERal~~~p~~---------~~lW~~Y~~~l~ 68 (438)
-+.|..||..|.... ...+-++.|..||.|...+ |.......++|||+..+..+ ..+|+.|+++..
T Consensus 2 ~~~r~~~e~~i~~~~-~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYE-EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp HHHHHHHHHHHHCCG-GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHHHcc-CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Confidence 357999999998876 1234578899999998865 34566788999999976543 379999998643
Q ss_pred hhccchhHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013667 69 KTLKVGNVVRDVYSRATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 69 ~~~~~~~~~~~i~erAl~--~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
....+|..... .+-....+|..|+..+|. .++...+..||++++
T Consensus 81 -------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -------DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp -------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 35678887776 345678999999998887 688999999999875
No 88
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=3.8e-07 Score=79.33 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=47.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+...+++.|.-||.++|+++++.+|...|+|.+|++++|+-+|.|-|||||
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFV 88 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFV 88 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccccccccee
Confidence 345668999999999999999999999999999999999999999999997
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.44 E-value=2.4e-07 Score=86.34 Aligned_cols=48 Identities=40% Similarity=0.606 Sum_probs=46.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||||||+.+|+++|+.+|..||.|..++++.++.+|+++|||||
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v 162 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFV 162 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEE
Confidence 689999999999999999999999999999999999889999999997
No 90
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.43 E-value=0.00019 Score=74.27 Aligned_cols=239 Identities=14% Similarity=0.058 Sum_probs=135.9
Q ss_pred hhhHhHHHHHhcC-CCCChHh-----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhH
Q 013667 3 NARAHLEEQISRQ-DLSDSEK-----FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (438)
Q Consensus 3 ~~R~~~E~~l~~~-~~~~~~~-----~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~ 76 (438)
.|+..|..++... +..+.+. +..=...+.+.+..+++..+-..|.-.|..+|...+..+..+.+....+ +...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~-~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN-NLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-CcHH
Confidence 4677788888662 1111111 2223344556677889999999999999999999999998886554443 3455
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccc----
Q 013667 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE---- 152 (438)
Q Consensus 77 ~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~---- 152 (438)
+...+..++........+|.-+-. ++.......-+..-|++++.......+.|-.+-+.. -++.+........+
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~-~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGN-LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHH-HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhcccccChHHHHH
Confidence 888999999977777788877653 444334344455555555543332212222111111 11111111110000
Q ss_pred ------------------------hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 013667 153 ------------------------GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWER 208 (438)
Q Consensus 153 ------------------------~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~ 208 (438)
..+-+-...+-|..|+++|.+.-........+|+..+.++...+ .+-.|.++|+.
T Consensus 627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~-qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG-QYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH-HHHHHHHHHHH
Confidence 00001111233456666666554433334457777777777777 77788888888
Q ss_pred HHHhcc--chHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 209 LLKISG--AMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 209 ~l~~~~--~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+++.+- +.+++-...+...-..|.+..|...+.+|+.
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887732 3455555555555555666666666666654
No 91
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.2e-07 Score=80.36 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=42.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.++|+|||||++.-+|++.+++.|++||+|.+||+..+ +||+||
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFV 205 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFV 205 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEE
Confidence 3467899999999999999999999999999999999988 489997
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=9.9e-06 Score=71.37 Aligned_cols=116 Identities=13% Similarity=0.041 Sum_probs=96.0
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc--hhHHHHHHH
Q 013667 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV--GNVVRDVYS 82 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~--~~~~~~i~e 82 (438)
-..++.+|..+|. +.+.|...+......|+++.+...|++|+...|.++.+|..|+..+....+. .+.+..+++
T Consensus 59 i~~l~~~L~~~P~----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 59 LQALQDKIRANPQ----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3567777777776 7889999999999999999999999999999999999999999865333332 467999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
++++..|.....|......+. ..++.+++...|++++...++
T Consensus 135 ~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 135 KALALDANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 999999998888888776444 478899999999999976665
No 93
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=7.9e-05 Score=70.51 Aligned_cols=203 Identities=10% Similarity=-0.002 Sum_probs=134.0
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccc-hhHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVY 81 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g-~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~-~~~~~~i~ 81 (438)
|-..++.+|..+|. ++.+|..-.......| ++..+...+++++..+|.+..+|..-.-.+..-+.. .+.....+
T Consensus 56 AL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 56 ALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 33455666666665 8999998877777777 578999999999999999999999776555433221 24578899
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHH
Q 013667 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (438)
++++..-|.....|....-.+.. .+..+++...++++|..++.+.+.+...+... .++... ..+ .
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl-----~~~~~l------~~~---~ 196 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI-----TRSPLL------GGL---E 196 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH-----Hhcccc------ccc---c
Confidence 99999999999999998765655 45678888999999987776433322221110 011000 000 1
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013667 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK---DMVSARGVWERLLKISGAMLEAWQSYIS 225 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~---~~~~ar~i~e~~l~~~~~~~~~W~~y~~ 225 (438)
..++..+.+..+++...+.....|.+..-+....+. ....|..++..++...+++...--..++
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d 263 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLD 263 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHH
Confidence 123445555555555556666789888777665321 3456888889988877766543333333
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=2.4e-07 Score=77.93 Aligned_cols=49 Identities=29% Similarity=0.474 Sum_probs=46.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.-++|-|-||.+-++.++|+.+|++||.|.+|.|+.|+.|+.++|||||
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFV 60 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFV 60 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEE
Confidence 3458999999999999999999999999999999999999999999998
No 95
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=1.1e-07 Score=86.39 Aligned_cols=48 Identities=27% Similarity=0.504 Sum_probs=46.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
-|.||||.++|+..|+.||..|.+||+|+++.+..|+.||+++||+||
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFV 160 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFV 160 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEE
Confidence 369999999999999999999999999999999999999999999997
No 96
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.41 E-value=4.7e-05 Score=80.73 Aligned_cols=258 Identities=9% Similarity=0.018 Sum_probs=157.3
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 013667 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erA 84 (438)
+..+...++.... .+...|...++..-+.|+++.|..+|++.. +.+...|...+..+... +..+.+..+|++.
T Consensus 244 ~~l~~~~~~~g~~---~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~-g~~~eA~~lf~~M 316 (697)
T PLN03081 244 QQLHCCVLKTGVV---GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH-GYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHhCCC---ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 4444444444321 134467777888888888888888888764 34667787777766544 4567788888888
Q ss_pred HHc-CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc----cHHHHHHHHHHH--HH---HHHHhhhcccccchh
Q 013667 85 TKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTR--ID---GLRRRILFSGEVEGV 154 (438)
Q Consensus 85 l~~-~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~----~~~~~~~~~~~~--~~---~l~rr~~~~~~~~~~ 154 (438)
... +......+...+..+-. .+..+.+.+++..++..++. .+...++.|... ++ .+...+...+.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~---- 391 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSR-LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL---- 391 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHh-ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe----
Confidence 763 32234456665654444 56677888888888876543 233344444220 00 11111111110
Q ss_pred hcHHHHHH------HHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHH
Q 013667 155 LDYSLIRE------TFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYIS 225 (438)
Q Consensus 155 ~~~~~~r~------~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~~W~~y~~ 225 (438)
.-|..+-. ..++|++++..+... ..+....+...+....+.| .+++|.++|+.+.+.++- +...|...++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 11222222 224566666554432 2233334555555556667 899999999999876432 2456778889
Q ss_pred HHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013667 226 MEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 226 ~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
...+.|.++.|..++++.- ......+|...+.-+..+|+++..+.+.++.
T Consensus 471 ~l~r~G~~~eA~~~~~~~~-----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAP-----FKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHhcCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999999987642 1223468999999999999988777665543
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=6.7e-05 Score=73.38 Aligned_cols=216 Identities=16% Similarity=0.153 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHH
Q 013667 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (438)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~ 135 (438)
.++-...=+.++. .+ +...+.=+||-||+.-|...+.|...-. ....+++...+...+.||+...+.+...+..+-.
T Consensus 285 ~pdPf~eG~~lm~-nG-~L~~A~LafEAAVkqdP~haeAW~~LG~-~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 285 HPDPFKEGCNLMK-NG-DLSEAALAFEAAVKQDPQHAEAWQKLGI-TQAENENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred CCChHHHHHHHHh-cC-CchHHHHHHHHHHhhChHHHHHHHHhhh-HhhhccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3444455555444 33 4666888999999999999999988554 4444666777888999999988876555443332
Q ss_pred HHH---------HHHHHhhhc--------c----cccc---hhh---cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 013667 136 TRI---------DGLRRRILF--------S----GEVE---GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (438)
Q Consensus 136 ~~~---------~~l~rr~~~--------~----~~~~---~~~---~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (438)
.|. .+|..-+.. . ...+ ... .+..+...|-.|..... .....+|..-.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~L 436 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGL 436 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhh
Confidence 222 122211100 0 0000 111 23344445544433221 11223455555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013667 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (438)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (438)
.-+....+ ++++|...|+.||...|+++.+|..+.--...-.....|...|.||++. .+ .+...+-++--.+=
T Consensus 437 GVLy~ls~-efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP----~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 437 GVLYNLSG-EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QP----GYVRVRYNLGISCM 509 (579)
T ss_pred HHHHhcch-HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CC----Ceeeeehhhhhhhh
Confidence 54444444 8999999999999999999999999988887777899999999999983 32 23455666666677
Q ss_pred CHHHHHHHHHhhhhhHHH
Q 013667 269 TLEDFDHSVQKVTPRLEE 286 (438)
Q Consensus 269 ~~~~~~~a~~~~~~~l~~ 286 (438)
|+..+++|+.-...+|.-
T Consensus 510 NlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 888899999888877754
No 98
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.39 E-value=3.9e-07 Score=91.58 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=46.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.++|||+|||+.+|+++|+++|+.||.|..|.++.++.+|+++|||||
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 569999999999999999999999999999999999889999999997
No 99
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.37 E-value=3.9e-07 Score=82.02 Aligned_cols=83 Identities=13% Similarity=0.291 Sum_probs=75.7
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013667 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
.++..|..|+.+..+.|-...+-.+|-.|+..+|+++++|+--+.|......+.+.++.+|.+++|..|.++.||..|.+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 47889999999999999999999999999999999999999988887766677888999999999999999999999998
Q ss_pred HHHH
Q 013667 101 SLER 104 (438)
Q Consensus 101 ~le~ 104 (438)
+|.
T Consensus 185 -~El 187 (435)
T COG5191 185 -MEL 187 (435)
T ss_pred -HHH
Confidence 553
No 100
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00016 Score=70.52 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH--HHHHHHHHH
Q 013667 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--ELWVRSLLS 101 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~--~lW~~y~~~ 101 (438)
-.|..-+-+-...|...+|+..|-+|...+|.....|+.|.....- .+..+++.+.|.+|-+.+|.+. .|++. ++
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-e~EhdQAmaaY~tAarl~~G~hlP~LYlg-me- 389 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-EGEHDQAMAAYFTAARLMPGCHLPSLYLG-ME- 389 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-cchHHHHHHHHHHHHHhccCCcchHHHHH-HH-
Confidence 3566655555555777788888888888888888888888765542 2345678888888888877654 34444 22
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcccHH--HHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCc
Q 013667 102 LERSRASEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~ 179 (438)
....++.+.+..-|..|+...|..+- ..+.+-. | ...++..+...|..++...........
T Consensus 390 -y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva----y------------~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 390 -YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA----Y------------TYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred -HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhee----e------------hHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 22246677788888888866554211 1111100 0 013344444555555544333222222
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+..+|...+....+++ ..+.|...|+++|...|.++.......=.....|+++.|...|.+||-.
T Consensus 453 ~w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 34457888888888888 7999999999999999998887766665666789999999999999973
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=98.34 E-value=7.9e-07 Score=63.89 Aligned_cols=44 Identities=39% Similarity=0.606 Sum_probs=40.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+|||+|||..++.++|+++|..||.|..+.+..++ |.++|+|||
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v 44 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFV 44 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEE
Confidence 58999999999999999999999999999999875 788999986
No 102
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.30 E-value=8.7e-07 Score=91.33 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||.++|+++|+++|+.||.|.+++++.+ .+|+++|||||
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV 331 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFV 331 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEE
Confidence 3458999999999999999999999999999999999 79999999997
No 103
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.30 E-value=0.0014 Score=69.80 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|...+....-+......| ++..|.++++.++..-|.+..+++.++++++..|.+..|..+++.++.
T Consensus 413 ~d~~~~~~l~a~~~~~~g-dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALN-DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred ccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 333344455566667778 999999999999999999999999999999999999999999988876
No 104
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=6.3e-05 Score=74.65 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=138.6
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 013667 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~ 116 (438)
++++.+..+|+.+-...|.-++----|-..|+ |.++.-.+-.+-+--+..-|.+++-|.....++- .+++.+.+...|
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS-LQkdh~~Aik~f 444 (638)
T KOG1126|consen 367 IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS-LQKDHDTAIKCF 444 (638)
T ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHH-HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh-hhhHHHHHHHHH
Confidence 46778888898888887765554444444444 3333222334445556677999999999765443 467788899999
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcC
Q 013667 117 EKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (438)
Q Consensus 117 ~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (438)
+||++.++.....|- ++ +.=..++..|+.|..++..++.-.+.++..|-=..-++.+.+
T Consensus 445 ~RAiQldp~faYayT-Ll--------------------GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 445 KRAIQLDPRFAYAYT-LL--------------------GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHhhccCCccchhhh-hc--------------------CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 999988765211111 00 111133466777877777777767778888887787888888
Q ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013667 197 KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (438)
Q Consensus 197 ~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (438)
.++.|.-.|++|+..+|.+.-+-..+..++...|..+.|..+|++|+. +....|-
T Consensus 504 -k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l 558 (638)
T KOG1126|consen 504 -KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPL 558 (638)
T ss_pred -hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCch
Confidence 799999999999999999998888888999999999999999999997 3444443
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=4.1e-05 Score=67.48 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCC--HHHHHHHHH
Q 013667 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS--EEEISTVFE 117 (438)
Q Consensus 40 ~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~--~~~~~~i~~ 117 (438)
+.+...++++|..+|.+.+.|......+.. .++.+.+...|++|++..|....+|..++..+....+. .+++..+++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLW-RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 444555566666666666666655554432 23445555666666666665556665555533222222 244555555
Q ss_pred HHHhC
Q 013667 118 KSLLC 122 (438)
Q Consensus 118 ral~~ 122 (438)
+++..
T Consensus 135 ~al~~ 139 (198)
T PRK10370 135 KALAL 139 (198)
T ss_pred HHHHh
Confidence 54443
No 106
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=2.7e-07 Score=85.93 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=46.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.+++|||-|+..+||.+++++|++||.|.+|+|++| ..|.|||||||
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV 170 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFV 170 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEE
Confidence 35679999999999999999999999999999999999 68999999997
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=7e-05 Score=62.40 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=93.5
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
..|+.+|..+|. + |...+......|+++.+...|.+++...|.+...|...+..+... +..+.+...|++|+
T Consensus 14 ~~~~~al~~~p~----~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVDPE----T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCHH----H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 457777777663 2 445566667889999999999999999999999999999877754 56678999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCccc
Q 013667 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~ 126 (438)
...|.....|......+.. .+..+++...|++++...+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKM-MGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred hcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999998875554 788999999999999877664
No 108
>smart00360 RRM RNA recognition motif.
Probab=98.24 E-value=1.3e-06 Score=62.49 Aligned_cols=43 Identities=40% Similarity=0.607 Sum_probs=40.4
Q ss_pred EeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 396 LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 396 v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
|+|||..+++++|+.+|..||.|..+.+..++.+++++|+|||
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v 43 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFV 43 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEE
Confidence 6899999999999999999999999999998778999999996
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=2.2e-06 Score=67.17 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=49.8
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+..+-++..|||.++...+|++++...|..||+|+.++|-.|+.||..+||+.|
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLv 119 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALV 119 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeee
Confidence 344567889999999999999999999999999999999999999999999976
No 110
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.00013 Score=72.60 Aligned_cols=177 Identities=12% Similarity=0.071 Sum_probs=106.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCc
Q 013667 45 LYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 45 ~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~ 124 (438)
+-.-.+...|++|+-|....+...- .++.+.+...|+|||..-|...-.+...-. .......++.+...|..||...+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSL-Qkdh~~Aik~f~RAiQldp~faYayTLlGh-E~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSL-QKDHDTAIKCFKRAIQLDPRFAYAYTLLGH-ESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhh-hhHHHHHHHHHHHhhccCCccchhhhhcCC-hhhhhHHHHhHHHHHHhhhcCCc
Confidence 3345556678888888888776543 356677888888888877743222211110 11123345677778888887777
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHH
Q 013667 125 STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (438)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~ 204 (438)
..+..++.+-+.|. +. .-|+.|.-++.+++.-+|....+...+..++...+ ..++|..
T Consensus 487 rhYnAwYGlG~vy~-----Kq----------------ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k-~~d~AL~ 544 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYL-----KQ----------------EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK-RKDKALQ 544 (638)
T ss_pred hhhHHHHhhhhhee-----cc----------------chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh-hhhHHHH
Confidence 66666555444331 11 12233333333344335666656666677777777 6778888
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 205 i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+|++|+..+|.++..-..-+......+++++|...++..-.
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 88888877777665444555555666777777777776554
No 111
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.18 E-value=1.9e-06 Score=88.79 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=44.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+|||+|||.++++++|+++|+.||.|.+|+++.+ .+|+++|||||
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV 134 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFV 134 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEE
Confidence 458999999999999999999999999999999998 68999999997
No 112
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.15 E-value=3.3e-06 Score=81.81 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=45.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++|||+|||.++++++|+.+|+.||.|..++++.++.+|.++|||||
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 136 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFI 136 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEE
Confidence 3458999999999999999999999999999999999888999999997
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0014 Score=58.11 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHcCCCCHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP---VSSDLWLDYTQYLDKTL--KVGNVVRDVYSRATKNCPWVGELWV 96 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p---~~~~lW~~Y~~~l~~~~--~~~~~~~~i~erAl~~~p~~~~lW~ 96 (438)
.+..|. +...-+++.+..+++..+...+ +-++.|.-|=....... +....+..++.+--..+|.|..+=.
T Consensus 16 ~~~~wr-----~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~ 90 (289)
T KOG3060|consen 16 QMRKWR-----EETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGK 90 (289)
T ss_pred HHHHHH-----hccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHH
Confidence 344674 4455688889988888887654 45788988766544322 2345588899998888999998888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhc
Q 013667 97 RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (438)
Q Consensus 97 ~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~ 176 (438)
.++..+|. .++.+++.++|++.++-++.+...+. ..+..++.+ . ... .+++...++++.
T Consensus 91 lkam~lEa-~~~~~~A~e~y~~lL~ddpt~~v~~K----RKlAilka~--G-------K~l----~aIk~ln~YL~~--- 149 (289)
T KOG3060|consen 91 LKAMLLEA-TGNYKEAIEYYESLLEDDPTDTVIRK----RKLAILKAQ--G-------KNL----EAIKELNEYLDK--- 149 (289)
T ss_pred HHHHHHHH-hhchhhHHHHHHHHhccCcchhHHHH----HHHHHHHHc--C-------CcH----HHHHHHHHHHHH---
Confidence 88877775 67789999999999987766433332 222222111 0 001 222333334433
Q ss_pred CCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcccCCCCh
Q 013667 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g---~~~~ar~i~~ral~~~~~~~~~ 253 (438)
+....+.|...++++...+ ++.+|.=.++.++-..|.++-+...|++..--.| ++..+|+.|.+++.. . +
T Consensus 150 -F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--~---~ 222 (289)
T KOG3060|consen 150 -FMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--N---P 222 (289)
T ss_pred -hcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--C---h
Confidence 3444568999999999999 8999999999999999999999999999766554 688899999999983 2 2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Q 013667 254 EDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
.-...|.-.....--+.++-++.
T Consensus 223 -~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 223 -KNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred -HhHHHHHHHHHHHHHHHHHhHHH
Confidence 22344444444444454444333
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0013 Score=58.26 Aligned_cols=60 Identities=17% Similarity=0.028 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013667 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 40 ~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
+-|+.++.+.-..+|.+..+=..++.+++..+ ....+.++|++-+..-|....++..-+-
T Consensus 69 ~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 69 DLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-NYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-chhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 33444444444444555555555554444332 2233445555555544544444444443
No 115
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.14 E-value=1.1e-06 Score=84.60 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=43.9
Q ss_pred EEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 394 v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+|||||.+++++++|+.+|++||.|..|.++.|..||.++|||||
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi 325 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFI 325 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceE
Confidence 999999999999999999999999999999999889999999996
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.12 E-value=0.001 Score=60.28 Aligned_cols=186 Identities=15% Similarity=0.022 Sum_probs=124.7
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH---
Q 013667 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE--- 93 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~--- 93 (438)
....+.+...+......|+++.+...|++++..+|.++ ..|...+..+.. .++.+.+...|+++++..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 44566788888777889999999999999999999876 466666665553 35678899999999999997665
Q ss_pred HHHHHHHHHHHc-------cCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHH
Q 013667 94 LWVRSLLSLERS-------RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (438)
Q Consensus 94 lW~~y~~~le~~-------~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~ 166 (438)
.|.......... .+..+.+...|++++...+.+......++. + ..+...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--~-------------------~~~~~~--- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR--M-------------------DYLRNR--- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH--H-------------------HHHHHH---
Confidence 233322222211 134566777777777654443211111000 0 000000
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
+ .......+.+....| ++..|...|+.++..+|+. .+.|..........|+++.|..+++..
T Consensus 165 ----~----------~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 165 ----L----------AGKELYVARFYLKRG-AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred ----H----------HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 001224455666778 8999999999999997754 578989999999999999999988877
Q ss_pred Hh
Q 013667 244 YS 245 (438)
Q Consensus 244 l~ 245 (438)
..
T Consensus 230 ~~ 231 (235)
T TIGR03302 230 GA 231 (235)
T ss_pred Hh
Confidence 65
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=0.0002 Score=58.74 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=94.6
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
+.|+.+|...|. +...-..++......|+.+.+...|++++..+|.++.+|...+..+... ++.+.+..+|++++
T Consensus 4 ~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSE----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChh----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467888887775 5566667777778889999999999999999999999999999877644 45677999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 86 ~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
...|....+|......+. ..++.+.+...|++++...+.
T Consensus 79 ~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGE 117 (135)
T ss_pred hcCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccc
Confidence 999999999988776444 467889999999999987665
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.11 E-value=0.0044 Score=61.90 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=142.3
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC----
Q 013667 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC---- 88 (438)
Q Consensus 21 ~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~--------~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~---- 88 (438)
.....-..........|+++.+..+|++||.. +|.-..+-..|+.++... +...++..+|++|+...
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhc
Confidence 34444444555555678999999999999987 443334444466665543 45577999999999842
Q ss_pred ----CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-------cHHHHH-HHHHHHHHHHHHhhhcccccchhhc
Q 013667 89 ----PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-------TFEEYL-DLFLTRIDGLRRRILFSGEVEGVLD 156 (438)
Q Consensus 89 ----p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-------~~~~~~-~~~~~~~~~l~rr~~~~~~~~~~~~ 156 (438)
|....+...... +.-..+.+.+++..+++|+.+-.. .+...+ .+...+ ... .+
T Consensus 276 G~~h~~va~~l~nLa~-ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~--~~~------------~~ 340 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAV-LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL--QSM------------NE 340 (508)
T ss_pred CCCCHHHHHHHHHHHH-HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH--HHh------------cc
Confidence 344455555444 333468889999999988853111 111111 111100 000 23
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCc-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----cc-----hHHHHHHHHHH
Q 013667 157 YSLIRETFQRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS----GA-----MLEAWQSYISM 226 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~----~~-----~~~~W~~y~~~ 226 (438)
++..-..+.+++.++...++..+ ....+...++.+....| .++.|+++|++++... .. ...+|.--..+
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 44555666777777766655444 44567778888888888 8999999999999872 21 23477655555
Q ss_pred HHhcccHHHHHHHHHHHHhc--ccCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 013667 227 EIELDHINEARSIYKRCYSK--RFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (438)
Q Consensus 227 e~~~g~~~~ar~i~~ral~~--~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~ 277 (438)
...+.+..|-.+|.+++.- .+.++.| .+...|.++...|-.+..++.|+
T Consensus 420 -~~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 420 -EELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred -HHhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHH
Confidence 3345566566666655432 1223333 55567777776664444444443
No 119
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=9.2e-06 Score=60.73 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=40.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...-+||.|||+++|.++..++|..||.|.-|||-..+. .+|-|||
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFV 62 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFV 62 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEE
Confidence 345899999999999999999999999999999976654 4688886
No 120
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0056 Score=58.01 Aligned_cols=202 Identities=13% Similarity=0.053 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH--------------------
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY-------------------- 81 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~-------------------- 81 (438)
+.......++++...|+...+...||.+...+|+...---.|+-.|...+ .-+....+-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 67778888888888888888888888888888888777777776655433 223333333
Q ss_pred --------------HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhc
Q 013667 82 --------------SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILF 147 (438)
Q Consensus 82 --------------erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~ 147 (438)
+++|+.-|.+..-++.--..| .+.+..+++.--|..|...-+.....|..++..|+..-
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL-~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~------ 382 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL-IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK------ 382 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH-HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc------
Confidence 333333333333332222211 12233334444444444333333333444443332211
Q ss_pred ccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013667 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (438)
Q Consensus 148 ~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e 227 (438)
..+.+.--|...+ +.+.+....+.+.-.-.-++.-. --++|.++++++|+..|.....-...+++.
T Consensus 383 -----------~~kEA~~~An~~~-~~~~~sA~~LtL~g~~V~~~dp~--~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 383 -----------RFKEANALANWTI-RLFQNSARSLTLFGTLVLFPDPR--MREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred -----------hHHHHHHHHHHHH-HHhhcchhhhhhhcceeeccCch--hHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 1111111111111 11111111111111011111111 246788888888888888777666777776
Q ss_pred HhcccHHHHHHHHHHHHh
Q 013667 228 IELDHINEARSIYKRCYS 245 (438)
Q Consensus 228 ~~~g~~~~ar~i~~ral~ 245 (438)
..-|....+.++++++|.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HhhCccchHHHHHHHHHh
Confidence 666777778888888886
No 121
>PLN03077 Protein ECB2; Provisional
Probab=98.06 E-value=0.00064 Score=73.97 Aligned_cols=262 Identities=9% Similarity=-0.005 Sum_probs=165.5
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.+++.|+..++..... +...|...++...+.|+++.|..+|++... .+...|...+.-+... +..+.+..+|+
T Consensus 407 ~a~~l~~~~~~~g~~~---~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~-g~~~eA~~lf~ 479 (857)
T PLN03077 407 VGVKLHELAERKGLIS---YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLN-NRCFEALIFFR 479 (857)
T ss_pred HHHHHHHHHHHhCCCc---chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHC-CCHHHHHHHHH
Confidence 4567778777664321 456888999998999999999999998654 3556788888766544 45677999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc----cHHHHHHHHHHH--HHHHHHhhhcccccchhhc
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTR--IDGLRRRILFSGEVEGVLD 156 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~----~~~~~~~~~~~~--~~~l~rr~~~~~~~~~~~~ 156 (438)
+.+..++.....+...+..+-. .+..+...+++..++..++. .....++.|... ++...+.+... . .+..-
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~-~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~-~d~~s 556 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACAR-IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E-KDVVS 556 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhh-hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C-CChhh
Confidence 9988664455566666655543 56677888888888876543 223334443220 00000000000 0 00011
Q ss_pred HHHHHHH------HHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHH
Q 013667 157 YSLIRET------FQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISME 227 (438)
Q Consensus 157 ~~~~r~~------f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~~W~~y~~~e 227 (438)
|..+-.. .++|+.++..+... ..+....+...+....+.| .+++|..+|+.+.+.++- +...+...++..
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2222222 24566666554432 1222223333444445566 899999999999965332 346788899999
Q ss_pred HhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013667 228 IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
.+.|++++|..+++..- +.+ ...+|...+.-++.+|+++..+.+.++.
T Consensus 636 ~r~G~~~eA~~~~~~m~---~~p--d~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 636 GRAGKLTEAYNFINKMP---ITP--DPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HhCCCHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999998752 122 3578999999999999998776665443
No 122
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.04 E-value=2.9e-06 Score=70.20 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=43.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEE-EEeecCCCCCCcceeeC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSI-RILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~fv 438 (438)
.++|||||.+++++..|..+|+.||.+.+. .+++++.||.++|||||
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i 144 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFI 144 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEE
Confidence 599999999999999999999999998764 78899899999999996
No 123
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.04 E-value=8.8e-06 Score=58.64 Aligned_cols=45 Identities=44% Similarity=0.625 Sum_probs=40.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+|+|+|||..+++++|+++|..+|.|..+.+..++ .+.++|+|||
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v 45 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFV 45 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEE
Confidence 58999999999999999999999999999999885 4477899986
No 124
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=5.2e-06 Score=72.67 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=49.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...++|++||-.||.+.++.+|-++|-+||.|++.++..|+.|+.||.||||
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 3468999999999999999999999999999999999999999999999997
No 125
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.99 E-value=0.00013 Score=58.98 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~-~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
+....+.+|+.||++. ..++.+|..+... -+ ....+|..|+.+....|++..|..||.+||
T Consensus 64 nD~RylkiWi~ya~~~-------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDERYLKIWIKYADLS-------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHTTB-------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3445567888887432 2788888888876 33 446788889988888888999999888875
No 126
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.98 E-value=0.00011 Score=58.76 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=78.2
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc---C-ChhhHHHHHHHHHhcCC---------CCHHHHHHHHHHHH
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---G-DPGRVQLLYERAITDFP---------VSSDLWLDYTQYLD 68 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~---g-~~~~~~~~yERal~~~p---------~~~~lW~~Y~~~l~ 68 (438)
.+.|..||..|..... .++-++.|..||.|...+ | .-.....++|||+..+- ....+|+.|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~-~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~ 80 (125)
T smart00777 2 EQQRQAFEQELQDLYE-GDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCD 80 (125)
T ss_pred hHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcC
Confidence 3578999999954221 123478899999998753 2 33456889999998643 33479999998742
Q ss_pred hhccchhHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 013667 69 KTLKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEK 118 (438)
Q Consensus 69 ~~~~~~~~~~~i~erAl~~~--p~~~~lW~~y~~~le~~~~~~~~~~~i~~r 118 (438)
+ ...+|.-..++- -....+|..|+.++|. .+....|..||+.
T Consensus 81 ----d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 81 ----E---PRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred ----C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Confidence 2 356777776643 4566899999999997 6788999999874
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.98 E-value=0.00011 Score=61.17 Aligned_cols=93 Identities=9% Similarity=-0.073 Sum_probs=80.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...|..+|...|. +...|...+......|+++.+...|++++..+|.++..|......+.. .+..+.+...|+
T Consensus 42 ~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~ 116 (144)
T PRK15359 42 RAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAFQ 116 (144)
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 355677888877776 888999999999999999999999999999999999999999987774 457788999999
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 013667 83 RATKNCPWVGELWVRSLL 100 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~ 100 (438)
+|+..+|.....|.....
T Consensus 117 ~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 117 TAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHhCCCChHHHHHHHH
Confidence 999999999888866543
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0049 Score=65.40 Aligned_cols=233 Identities=9% Similarity=0.005 Sum_probs=138.3
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH------
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG------ 92 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~------ 92 (438)
++.+.++|...+......++++.+..+.+.++..+|....+|....-..... +..+.+.-+ +++..++...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhcccccchhHHH
Confidence 4668899999999888999999999999999999999999998777643332 233333333 6666554432
Q ss_pred -------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHH--HHHHHHHHHHHHHhhhcccccchhhcH
Q 013667 93 -------------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGVLDY 157 (438)
Q Consensus 93 -------------~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~--~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (438)
......+.++. ..+..+++..+|++++...+.++... +..+.+- .++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-----------------~dL 165 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-----------------EDK 165 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----------------hhH
Confidence 33334344333 35677889999999998876543221 1111110 023
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHhcccHHH
Q 013667 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINE 235 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~~W~~y~~~e~~~g~~~~ 235 (438)
+.....+.+|+..+-.. +.......+|..+... ...+++---.|.++++.. ++.-..+|..........++++.
T Consensus 166 ~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 166 EKAITYLKKAIYRFIKK-KQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 33344444444322100 0122333455555432 222455545555555554 44455677776677777778999
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013667 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (438)
Q Consensus 236 ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~ 278 (438)
+-.+|+++|.. .+++.....+--..|-..|++-..+++++.
T Consensus 242 ~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 242 VIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHHH
Confidence 99999999974 333333333333334466777666666553
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.96 E-value=0.0069 Score=60.47 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013667 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 23 ~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
.-.|.-|+-+-....+++.++..|.+||...|+|..+|.+..- |..++++.+-....-.+-+...|.....|+.++...
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl-LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL-LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3468888887777778888888888888888888888888664 555666655566666677777788888888888644
Q ss_pred HHccCCHHHHHHHHH---HHHhCCcccHHHH--HHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013667 103 ERSRASEEEISTVFE---KSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 103 e~~~~~~~~~~~i~~---ral~~~~~~~~~~--~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
.. .+....+..|.+ +....+++ ...+ ....+-....+ .-.+.++.+++.+...-..
T Consensus 154 ~L-~g~y~~A~~il~ef~~t~~~~~s-~~~~e~se~~Ly~n~i~-----------------~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 154 HL-LGEYKMALEILEEFEKTQNTSPS-KEDYEHSELLLYQNQIL-----------------IEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HH-HHHHHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHH-----------------HHcccHHHHHHHHHhhhhH
Confidence 33 344444444433 33322222 1111 11111110000 0012244555544321111
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcc--------c
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI-ELDHINEARSIYKRCYSKR--------F 248 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~-~~g~~~~ar~i~~ral~~~--------~ 248 (438)
.-..+.+-..-+.++..++ .++.|..+|..++..+|++......+....- -.+.......+|.+.-+.- +
T Consensus 215 i~Dkla~~e~ka~l~~kl~-~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLG-QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HHHHHHHhhhHHHHHHHHh-hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 1111223344577888889 8999999999999999998775544444332 2223344446666554420 0
Q ss_pred -----CCCChHHHHHHHHHHHHHhCCHHHHH
Q 013667 249 -----TGTGSEDICHAWLRFEREYGTLEDFD 274 (438)
Q Consensus 249 -----~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (438)
..+.-..++..|+.-+-..|-+..+.
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 11112356667777776666554443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.95 E-value=0.0017 Score=67.84 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHH
Q 013667 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (438)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~ 132 (438)
+|.+++.-...+..+... +..+.+..++++++..+|.....+..++..|-+ .+.++++...+++++...+.
T Consensus 82 ~~~~~~~~~~La~i~~~~-g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~------- 152 (694)
T PRK15179 82 YPHTELFQVLVARALEAA-HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSS------- 152 (694)
T ss_pred ccccHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCC-------
Confidence 444455555555444432 233445555555555555555555555554443 34445555555555544333
Q ss_pred HHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013667 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 133 ~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
+.......+.....+| .+++|..+|++++..
T Consensus 153 ------------------------------------------------~~~~~~~~a~~l~~~g-~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 153 ------------------------------------------------SAREILLEAKSWDEIG-QSEQADACFERLSRQ 183 (694)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHhc-chHHHHHHHHHHHhc
Confidence 3334444555556677 788888888888887
Q ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 213 ~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+|+..+.|+.|....+..|+.+.|...|++|+..
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888888888888888888888888888864
No 131
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.94 E-value=1.4e-05 Score=47.76 Aligned_cols=32 Identities=44% Similarity=0.949 Sum_probs=22.3
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013667 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~ 68 (438)
|+++.++.+|+++|..+|.++.+|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35566777777777777777777777777653
No 132
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.94 E-value=1.3e-05 Score=77.09 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=43.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+.|.||||.+...+|+.+|+.||.|..|.|++. ..|+.+|||||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV 163 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFV 163 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEE
Confidence 458999999999999999999999999999999976 56777799997
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.011 Score=59.76 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHcCCCCHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT----LKVGNVVRDVYSRATKNCPWVGELWVR 97 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~----~~~~~~~~~i~erAl~~~p~~~~lW~~ 97 (438)
.......-+.+..+.|..+.|..+|...|..||.+......|...+.-. ..+.+....+|+..-..+|.+..+-..
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 3334444556667778888888888888888888888888777766211 123455777888777777875432222
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhh--
Q 013667 98 SLLSLERSRASE-EEISTVFEKSLLCAFST-FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE-- 173 (438)
Q Consensus 98 y~~~le~~~~~~-~~~~~i~~ral~~~~~~-~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~-- 173 (438)
-+.++. +..+ ..+.......+..|.++ ....-.+|. +.-+ ...+..++......+..
T Consensus 117 ~L~~~~--g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K--------------~~~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 117 PLDFLE--GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEK--------------AAIIESLVEEYVNSLESNG 177 (517)
T ss_pred hcccCC--HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---ChhH--------------HHHHHHHHHHHHHhhcccC
Confidence 122111 1111 22344444455444432 222222221 0000 00111111111111100
Q ss_pred hhc------CCchhHHHHHHH--HHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 174 QMK------NTDGLLRLYAYW--AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 174 ~~~------~~~~~~~l~~~~--a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
.+. ..++..-+|..| |+.....| +++.|.++.+++|...|..+++++.=+++....|++..|-..++.|-
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 112233355443 55555555 66666666666666666666666666666666666666555555544
No 134
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=1.2e-05 Score=73.45 Aligned_cols=46 Identities=9% Similarity=0.228 Sum_probs=44.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.|||..+.++.+++||+.+|+.||+|..|.+.+++.++.+|||||+
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfi 257 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFI 257 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeE
Confidence 8999999999999999999999999999999999888889999996
No 135
>PLN03077 Protein ECB2; Provisional
Probab=97.91 E-value=0.0042 Score=67.69 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=159.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
+|...|+........ | +...+...+...-+.|+++.+..+++.++... ..+..+|...+..+.+. +..+.+..+|
T Consensus 372 ~A~~lf~~M~~~g~~--P-d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~vf 447 (857)
T PLN03077 372 KALETYALMEQDNVS--P-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC-KCIDKALEVF 447 (857)
T ss_pred HHHHHHHHHHHhCCC--C-CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 456677766554321 1 23356666777778899999999999999874 45677888888766644 5678899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH--HHH------Hhhhcccc-cc
Q 013667 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--GLR------RRILFSGE-VE 152 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~--~l~------rr~~~~~~-~~ 152 (438)
++... | ....|...|..+-. .+..+++..+|.+++....++...+..+..+++. .+. ..+..... .+
T Consensus 448 ~~m~~--~-d~vs~~~mi~~~~~-~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 448 HNIPE--K-DVISWTSIIAGLRL-NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HhCCC--C-CeeeHHHHHHHHHH-CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 88654 2 34578888875554 6778899999999886433333333322221110 000 00000000 00
Q ss_pred hhhcHHHHHH------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHH
Q 013667 153 GVLDYSLIRE------TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYI 224 (438)
Q Consensus 153 ~~~~~~~~r~------~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~~W~~y~ 224 (438)
. .-...+.. .++.|+..+... ......|...+.-...+| +.+.|.++|+++... .|+..- +...+
T Consensus 524 ~-~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G-~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll 596 (857)
T PLN03077 524 G-FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVESGVNPDEVT-FISLL 596 (857)
T ss_pred c-eechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCccc-HHHHH
Confidence 0 00001111 224455555443 233447888888888888 899999999998875 566443 44555
Q ss_pred HHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
.-....|.++.|..+|+...... ........+...++.-.+-|.++.....+++
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~-gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKY-SITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66667799999999999988421 1111224566667777777777666655544
No 136
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.91 E-value=0.0026 Score=67.75 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
..+.-..-+-.....|++..+...|++++...|.+. .+. +++.++... +..+.++..+++++..-|.....-...+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 444333333345678999999999999999999995 444 777766544 45577999999999433333333332233
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch
Q 013667 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (438)
Q Consensus 101 ~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~ 180 (438)
+....++...+..+|++++...+.....+..+...+. +. .-.++|+..+.......+.
T Consensus 111 -ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-----------------~~----~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 111 -AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-----------------DA----GRGGVVLKQATELAERDPT 168 (822)
T ss_pred -HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-----------------hc----CCHHHHHHHHHHhcccCcc
Confidence 3334688899999999999988876555544332221 10 2234444444444333333
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHH
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~ 240 (438)
....+..+.+....+ +...|..+|++++..+|++.++...|+......|-...|-.+.
T Consensus 169 -~~~~l~layL~~~~~-~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 169 -VQNYMTLSYLNRATD-RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred -hHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 222344455554455 5556999999999999999999999999888887655444443
No 137
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.90 E-value=0.0075 Score=64.10 Aligned_cols=261 Identities=10% Similarity=0.032 Sum_probs=156.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
+|...|++.+...... +...|...+......|....+..++..++... ..+..+|...+..+.+. +..+.+..+|
T Consensus 207 ~A~~lf~~M~~~g~~p---~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~~~A~~vf 282 (697)
T PLN03081 207 EAFALFREMWEDGSDA---EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC-GDIEDARCVF 282 (697)
T ss_pred HHHHHHHHHHHhCCCC---ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC-CCHHHHHHHH
Confidence 4667788887664321 33456666776677888999999998887753 45667777777766654 4667899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHH--------HHHHhhhcccccc
Q 013667 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRID--------GLRRRILFSGEVE 152 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~-~~~~~~~~~~~~~~--------~l~rr~~~~~~~~ 152 (438)
++... .....|...+..+-+ .+..+++..+|++....+.. ....|..+...++. .+...+.......
T Consensus 283 ~~m~~---~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 283 DGMPE---KTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HhCCC---CChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 87643 355788888875554 67889999999998865533 22222222222110 0000111000000
Q ss_pred hhhcHHHHHH------HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHH
Q 013667 153 GVLDYSLIRE------TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYI 224 (438)
Q Consensus 153 ~~~~~~~~r~------~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~~W~~y~ 224 (438)
...-+..+-. .++.|..++..+.. +....|...+.-+...| +.+.|.++|++++.. .|+ ...+...+
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G-~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll 433 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG-RGTKAVEMFERMIAEGVAPN-HVTFLAVL 433 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Confidence 0000111111 23556666554432 22336777777777888 889999999998876 454 34466677
Q ss_pred HHHHhcccHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013667 225 SMEIELDHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (438)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~-~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~ 278 (438)
.-....|.++.|..+|+..... .+.+ ....+...++.-...|.++...+.++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHH
Confidence 7777788899999999888752 1111 12344555566566677665554443
No 138
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=1.2e-05 Score=70.52 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=45.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.+++|||-|...-.|+|++.+|..||.|.+|.+.+. ..|.+|||+||
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFV 65 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFV 65 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEE
Confidence 36779999999999999999999999999999999998 58999999997
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.0007 Score=70.63 Aligned_cols=134 Identities=14% Similarity=0.054 Sum_probs=106.9
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
++...++.++...|. +.+++..|+..+.+.+.++.+...+++++...|++...-...+..+.. .+..+++..+|+
T Consensus 104 ea~~~l~~~~~~~Pd----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y~ 178 (694)
T PRK15179 104 EGLAVWRGIHQRFPD----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACFE 178 (694)
T ss_pred HHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence 456667777777775 888999999999999999999999999999999999999999988774 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc---cHHHHHHHHHHHHHHHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLTRIDGLR 142 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~---~~~~~~~~~~~~~~~l~ 142 (438)
|++...|.....|..|...+.. .+..+++...|++|+..--+ .+..++.-..+.|+.++
T Consensus 179 ~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (694)
T PRK15179 179 RLSRQHPEFENGYVGWAQSLTR-RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALR 240 (694)
T ss_pred HHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHH
Confidence 9999888889999999986665 67789999999999964333 23334433344444444
No 140
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.0059 Score=63.59 Aligned_cols=203 Identities=16% Similarity=0.190 Sum_probs=122.2
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCH
Q 013667 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (438)
Q Consensus 33 e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~ 109 (438)
-...|++..+...||+.+..+|++.+.-.-........ ....+.+..+..+++...|.....|+...+.+|. .+.
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~--~d~ 429 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ--TDP 429 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh--cCh
Confidence 34456677777778888887777765433222211111 1123557777788888778888888887776664 333
Q ss_pred HHHHHHHHHHHhC----CcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCc---hhH
Q 013667 110 EEISTVFEKSLLC----AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD---GLL 182 (438)
Q Consensus 110 ~~~~~i~~ral~~----~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~---~~~ 182 (438)
-.....|.+|+.. +....-+ ++..++.+.-++ +++......|..|...+........ ..+
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E----~LNNvaslhf~~---------g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPE----VLNNVASLHFRL---------GNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHH----HHHhHHHHHHHh---------cChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 3336666666621 0000001 111111111111 3455566777777665432221111 122
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (438)
.+--..++++..++ +.+.|-++|..+++.+|...+..+...-+.+..++...|...++.++.. ....|
T Consensus 497 t~~YNlarl~E~l~-~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np 564 (1018)
T KOG2002|consen 497 TLKYNLARLLEELH-DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNP 564 (1018)
T ss_pred HHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCc
Confidence 22334577888888 8999999999999999998887777777777788899999999999973 44445
No 141
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.81 E-value=3.2e-05 Score=77.93 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=40.5
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+++|||+|||+ .+|+++|+++|+.||.|.+|+++.++ +|||||
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV 318 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALI 318 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEE
Confidence 4567999999998 69999999999999999999999873 699997
No 142
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.80 E-value=2.4e-05 Score=72.61 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=46.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+||||.||.++++.++++.|.+||.|..+.++.|..+++++|||||
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv 144 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFV 144 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceee
Confidence 3558999999999999999999999999999999999999999999997
No 143
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.79 E-value=0.0041 Score=60.11 Aligned_cols=203 Identities=10% Similarity=-0.065 Sum_probs=123.5
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHH
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW 95 (438)
||+..-.|.....+....|++..+...|.++....|.+ .+.+.-.+..+. ..++.+.+..++++++...|.....|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW-IAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 34455566666666667788888888898888877654 334433333222 33566789999999999999888776
Q ss_pred H---HHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHh
Q 013667 96 V---RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (438)
Q Consensus 96 ~---~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~ 172 (438)
. .++.... ..+....+..++.......+..+.. +.. ... +.... .++......+++++..
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~a~---~~~~~---------G~~~~A~~~~~~al~~-- 143 (355)
T cd05804 81 KLHLGAFGLGD-FSGMRDHVARVLPLWAPENPDYWYL-LGM-LAF---GLEEA---------GQYDRAEEAARRALEL-- 143 (355)
T ss_pred HHhHHHHHhcc-cccCchhHHHHHhccCcCCCCcHHH-HHH-HHH---HHHHc---------CCHHHHHHHHHHHHhh--
Confidence 6 2222111 1233334444444322222221111 100 000 00000 2333444444444443
Q ss_pred hhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch----HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM----LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~----~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+.....+...+.+....| +++.|...+++++...|.. ...|...+.+....|+++.|..+|++++.
T Consensus 144 -----~p~~~~~~~~la~i~~~~g-~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 144 -----NPDDAWAVHAVAHVLEMQG-RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred -----CCCCcHHHHHHHHHHHHcC-CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3444456777888888888 8999999999999886532 24677888889999999999999999875
No 144
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0082 Score=59.06 Aligned_cols=207 Identities=13% Similarity=0.147 Sum_probs=122.9
Q ss_pred HHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC
Q 013667 9 EEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88 (438)
Q Consensus 9 E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~ 88 (438)
+..+...|+ +.....-+|......|+..+...+=-+.+...|..+--|..-.-|...-+ ...+++..|.+|+..-
T Consensus 268 ~~lle~dpf----h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-k~seARry~SKat~lD 342 (611)
T KOG1173|consen 268 EELLEKDPF----HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-KYSEARRYFSKATTLD 342 (611)
T ss_pred HHHHhhCCC----CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-CcHHHHHHHHHHhhcC
Confidence 334444454 55555556666666666655555556666777777777877777666443 3455777888887777
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHH
Q 013667 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (438)
Q Consensus 89 p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~ 166 (438)
|..+.-|+.|...+-. .+..+.+...|-+|-..-+. .+..|+.+.-.. ...+..
T Consensus 343 ~~fgpaWl~fghsfa~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-----------------------t~n~kL 398 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-----------------------TNNLKL 398 (611)
T ss_pred ccccHHHHHHhHHhhh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-----------------------hccHHH
Confidence 7777788877765443 23345555666665543222 233344332111 133444
Q ss_pred HHHHHhhhhcCCchhHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHhc----cc---hHHHHHHHHHHHHhcccHHHHHH
Q 013667 167 ASDYLSEQMKNTDGLLRLYAYW-AHLEQSMGKDMVSARGVWERLLKIS----GA---MLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~-a~~e~~~~~~~~~ar~i~e~~l~~~----~~---~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
|-.++..++.-+|... +.... +-+-...+ .+..|...|+.++..- +. ...+|.......++.+.++.|..
T Consensus 399 Ae~Ff~~A~ai~P~Dp-lv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDP-LVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHhcCCCcc-hhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 4455555444333222 22332 22223334 7889999999999441 11 22367777778888999999999
Q ss_pred HHHHHHhc
Q 013667 239 IYKRCYSK 246 (438)
Q Consensus 239 i~~ral~~ 246 (438)
.|+++|..
T Consensus 477 ~~q~aL~l 484 (611)
T KOG1173|consen 477 YYQKALLL 484 (611)
T ss_pred HHHHHHHc
Confidence 99999973
No 145
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.70 E-value=7.5e-05 Score=44.50 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013667 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
+.+.||.+|++++..+|....+|+.|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 6889999999999999999999999999986
No 146
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.67 E-value=6.2e-05 Score=63.90 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=44.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCC-CCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDV-GGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...-++|+.+|+.+.+..+...|.+| |.+..+++.+++.||.|||||||
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFV 97 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFV 97 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEE
Confidence 34479999999999999999999998 78888999899999999999997
No 147
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.65 E-value=0.0076 Score=54.56 Aligned_cols=174 Identities=13% Similarity=-0.022 Sum_probs=107.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH---HHHHHHHHHhh-------cc
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKT-------LK 72 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~l---W~~Y~~~l~~~-------~~ 72 (438)
.+...|+..+...|. ++.....|...+......|+++.+...|++++..+|.++.+ |..-....... .+
T Consensus 51 ~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 51 EAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 356678888887774 22334578888888889999999999999999999988763 43333222211 13
Q ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHH-HHHHHHHHHHHHhhhccccc
Q 013667 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL-DLFLTRIDGLRRRILFSGEV 151 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~-~~~~~~~~~l~rr~~~~~~~ 151 (438)
..+.+...|+++++..|.+...|..+...... ....... ...+ .++.. .
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~--------~~~~~~~--------~~~~a~~~~~--------~------ 179 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAPDAKKRMDYL--------RNRLAGK--------ELYVARFYLK--------R------ 179 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH--------HHHHHHH--------HHHHHHHHHH--------c------
Confidence 45678999999999999987776554432111 0000000 0000 11100 0
Q ss_pred chhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013667 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 152 ~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
.++......|.+++.... +.+...+.|...+......| +.+.|..+++.+...+|+
T Consensus 180 ---g~~~~A~~~~~~al~~~p----~~~~~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 180 ---GAYVAAINRFETVVENYP----DTPATEEALARLVEAYLKLG-LKDLAQDAAAVLGANYPD 235 (235)
T ss_pred ---CChHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 233333344444443321 12334567888888888888 899999999998887764
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00031 Score=49.51 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=51.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+......| +++.|+.+|+.++..+|++..+|..+..+....|+++.|...|++++..
T Consensus 3 ~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355566778 8999999999999999999999999999999999999999999999973
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.62 E-value=0.0088 Score=63.53 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013667 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (438)
Q Consensus 43 ~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~ 122 (438)
...|..++...+.+-..-...+.... .++..+.+..+|+|+++.-|....+-..|+.++... +.+.+..++.+|+..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 33444444444544455555555443 456678899999999999999999988988877765 899999999999965
Q ss_pred Cc--ccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhc-CCchhHHHHHHHHHHHHHcCCCH
Q 013667 123 AF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK-NTDGLLRLYAYWAHLEQSMGKDM 199 (438)
Q Consensus 123 ~~--~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~-~~~~~~~l~~~~a~~e~~~~~~~ 199 (438)
.. ..+.....+|..+|.+.- .+++.+-.+..+....+. ++ ..+....+|.+|- .++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~------------~d~d~f~~i~~ki~~~~~--~~~~~~~~~~l~~~y~-----~~~~~ 239 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNS------------DDFDFFLRIERKVLGHRE--FTRLVGLLEDLYEPYK-----ALEDW 239 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCc------------ccchHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh-----hhhhh
Confidence 32 256667788877765432 111111111111111000 00 0112223555553 23378
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHH
Q 013667 200 VSARGVWERLLKISGAMLEAWQSYIS 225 (438)
Q Consensus 200 ~~ar~i~e~~l~~~~~~~~~W~~y~~ 225 (438)
+.+..+++.+|+..|++...-...+.
T Consensus 240 ~~~i~iLK~iL~~~~~n~~a~~~l~~ 265 (906)
T PRK14720 240 DEVIYILKKILEHDNKNNKAREELIR 265 (906)
T ss_pred hHHHHHHHHHHhcCCcchhhHHHHHH
Confidence 89999999999987776543333333
No 150
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.60 E-value=9.9e-05 Score=71.39 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=45.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..-++++||++|+..+.-.+|+.+|++||.|+-.+||++..+.-.|.||||
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfV 452 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFV 452 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEE
Confidence 455779999999999999999999999999999999998667667889997
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0016 Score=48.42 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
.|...+......|++..+..+|++++...|.+..+|..++..+... ++.+.+...|++++...|....+|......+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3555666666789999999999999999999998998888877644 456779999999999999888888887765444
Q ss_pred ccCCHHHHHHHHHHHHhCC
Q 013667 105 SRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~ 123 (438)
.++.+.+...|.+++...
T Consensus 81 -~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 -LGKYEEALEAYEKALELD 98 (100)
T ss_pred -HHhHHHHHHHHHHHHccC
Confidence 566778888888877543
No 152
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=6.7e-05 Score=72.10 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=40.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.|||.|||..+|..+|..+|+.||.|.+|+++++ ..| ++|| ||
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV 120 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FV 120 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EE
Confidence 4999999999999999999999999999999999 577 9999 97
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00037 Score=49.76 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCC
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p 89 (438)
+...|...+......|+++.++..|++||..+|.++.+|..........++....+...|++|+..-|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34578888888888888888888999999888888888888887666443256678888888888765
No 154
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.57 E-value=0.00011 Score=42.69 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013667 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
.+++||.||++.+..+|+ +..|+.|+.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 578999999999988876 888999999985
No 155
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.56 E-value=0.0016 Score=53.25 Aligned_cols=81 Identities=9% Similarity=-0.064 Sum_probs=64.5
Q ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
+.|...+.......+....+|...+.+....+ +++.|..+|+.++..+|+....|.....+....|+++.|...|++++
T Consensus 34 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 34 DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK-EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333334555668888888888888 89999999999999999999999888888888999999999999999
Q ss_pred hc
Q 013667 245 SK 246 (438)
Q Consensus 245 ~~ 246 (438)
..
T Consensus 113 ~~ 114 (135)
T TIGR02552 113 EI 114 (135)
T ss_pred Hh
Confidence 73
No 156
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.56 E-value=6e-05 Score=75.01 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=44.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.|.|.||||.++-.+++.+|..||.|.+|+|+.-...+.+||||||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv 660 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFV 660 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceee
Confidence 458999999999999999999999999999999987556778999997
No 157
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.033 Score=53.43 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=117.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCH
Q 013667 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (438)
Q Consensus 30 ~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~ 109 (438)
.+....+|+++.+...|..||.......+...+-..-. ...+..+.++.+|-+.-...-++.++-...+..+|. ..+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCH
Confidence 33344567777777777777765544444333322211 223445566666665544444555655555554444 3445
Q ss_pred HHHHHHHHHHHhCCcccH---HHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHH
Q 013667 110 EEISTVFEKSLLCAFSTF---EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYA 186 (438)
Q Consensus 110 ~~~~~i~~ral~~~~~~~---~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~ 186 (438)
..+.+++-++.+..+..+ ...-++|. +- .|-+.....+-....+ +++.++..-
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlyd--------qe---------gdksqafq~~ydsyry-------fp~nie~ie 630 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYD--------QE---------GDKSQAFQCHYDSYRY-------FPCNIETIE 630 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhh--------cc---------cchhhhhhhhhhcccc-------cCcchHHHH
Confidence 556666666665544322 22223331 11 1211111111111111 333333322
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 013667 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (438)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~ 266 (438)
..+.++.... =.+++...|+++.-..|++...-+-.+.+.++.|++.+|..+|+..-. .|+.+. +-+.-.++.+..
T Consensus 631 wl~ayyidtq-f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedl--dclkflvri~~d 706 (840)
T KOG2003|consen 631 WLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDL--DCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccch--HHHHHHHHHhcc
Confidence 2222222222 247899999999888888777445555677888999999999988765 454322 334556677777
Q ss_pred hCCH--HHHHHHHHhhhh
Q 013667 267 YGTL--EDFDHSVQKVTP 282 (438)
Q Consensus 267 ~G~~--~~~~~a~~~~~~ 282 (438)
.|-- ..+..-+++..+
T Consensus 707 lgl~d~key~~klek~ek 724 (840)
T KOG2003|consen 707 LGLKDAKEYADKLEKAEK 724 (840)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 7743 355454555543
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.075 Score=53.39 Aligned_cols=203 Identities=15% Similarity=0.049 Sum_probs=110.1
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 013667 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i 115 (438)
.|+.+.+...-.+++...+.+.-.|.-|.-+.. ..+..+.+..+|..|++.-|...+||..... |..+.++.+.....
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl-LQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSL-LQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhhhhHHHH
Confidence 355666666667777777777777777775433 3455566777777777777777777776543 33333333333333
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCC---ch-----hHHHHHH
Q 013667 116 FEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT---DG-----LLRLYAY 187 (438)
Q Consensus 116 ~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~---~~-----~~~l~~~ 187 (438)
-.+.++..+.. ...|.. +.. -.-+...+..|..+++...++. ++ .....++
T Consensus 132 r~~LLql~~~~----ra~w~~---~Av--------------s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly 190 (700)
T KOG1156|consen 132 RNQLLQLRPSQ----RASWIG---FAV--------------AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY 190 (700)
T ss_pred HHHHHHhhhhh----HHHHHH---HHH--------------HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 33333322211 011111 000 0112233444444443322211 11 1123333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013667 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (438)
-.++....| ..+.|.+....-=...-+...+-..-+++++..|.++.|..+|.+.+.++ | +-+..|..++...
T Consensus 191 ~n~i~~E~g-~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-----P-dn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 191 QNQILIEAG-SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-----P-DNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHcc-cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-----c-hhHHHHHHHHHHH
Confidence 444445556 44444443333322233444566677788889999999999999999852 2 4567888888888
Q ss_pred C
Q 013667 268 G 268 (438)
Q Consensus 268 G 268 (438)
|
T Consensus 264 g 264 (700)
T KOG1156|consen 264 G 264 (700)
T ss_pred H
Confidence 8
No 159
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.48 E-value=0.00015 Score=73.18 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=39.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCC--eeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGG--VSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+|||+|||.++|+++|+++|+.||. |..+++... .++ .+|||||
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~-~~~-~~~~gfV 441 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK-DNE-RSKMGLL 441 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC-CCC-cceeEEE
Confidence 4469999999999999999999999998 888888654 334 5899997
No 160
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.48 E-value=7.9e-05 Score=66.56 Aligned_cols=50 Identities=20% Similarity=0.497 Sum_probs=46.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+...|||||+.+.+|-+++...|+.||.|..+.++.|+.+|+++||+||
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yv 148 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYV 148 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEE
Confidence 45569999999999999999999999999999999999989999999996
No 161
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.47 E-value=0.00017 Score=69.62 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.....+|||+|||++++...|+++|..||.|+..+|..-...++..+||||
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV 335 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFV 335 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEE
Confidence 345667999999999999999999999999999888775434555589987
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.43 E-value=0.0012 Score=46.95 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYKRCYS 245 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g-~~~~ar~i~~ral~ 245 (438)
.+|...+......+ +++.|...|++++..+|++..+|..........| ++..|...|+++++
T Consensus 4 ~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 47888888888888 9999999999999999999999999999999999 79999999999997
No 163
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.43 E-value=0.098 Score=50.46 Aligned_cols=204 Identities=12% Similarity=-0.022 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH----HHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG----ELWVRSLL 100 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~----~lW~~y~~ 100 (438)
.+..........|+++.+...|++++...|.+...+..+...+... +..+.+...+++++...|... ..|...+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3334445556788899999999999999999988888887776643 466778899999998776432 34545555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCc--ccHHHHHHH-HHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013667 101 SLERSRASEEEISTVFEKSLLCAF--STFEEYLDL-FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 101 ~le~~~~~~~~~~~i~~ral~~~~--~~~~~~~~~-~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
+....++.+++..+|++++...+ ..+...+.. +..+ +............|+. +...... ...
T Consensus 195 -~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~g~~~~~~~w~~---~~~~~~~----~~~- 259 (355)
T cd05804 195 -FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW------RLELAGHVDVGDRWED---LADYAAW----HFP- 259 (355)
T ss_pred -HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH------HHHhcCCCChHHHHHH---HHHHHHh----hcC-
Confidence 33346888999999999874433 122211111 1111 1111110000011111 1111111 000
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-c---c-----hHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-G---A-----MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~-~---~-----~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
...........+......+ +.+.|..+++.+.... . . ...+-+-.+-.....|+.+.|..++..++.
T Consensus 260 ~~~~~~~~~~~a~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 260 DHGLAFNDLHAALALAGAG-DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cccchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0111112223555556666 8999999998887642 1 1 122333334445567899999999999986
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00072 Score=47.59 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=50.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC
Q 013667 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (438)
Q Consensus 30 ~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~ 91 (438)
+......|+++.+..+|+++|...|.++..|..+...+... +..+.+...|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 44456788999999999999999999999999999988754 56677889999999998865
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.022 Score=57.70 Aligned_cols=179 Identities=12% Similarity=0.019 Sum_probs=111.2
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSR----ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~----~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~ 158 (438)
++.+.-|.+...|..|++...... .....+..+|++|+...+.....+..+..++ .++... .. ..+ .++.
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~--~~~~~~-~~-~~~--~~l~ 401 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALAD--IVRHSQ-QP-LDE--KQLA 401 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HHHHhc-CC-ccH--HHHH
Confidence 333445667788888887544321 2256788999999988776433333332222 221111 10 000 1222
Q ss_pred HHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHH
Q 013667 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 159 ~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
.+.....++...- ..+....++...+-.....| +++.|...+++++...|+ ...|..+..+....|+.+.|..
T Consensus 402 ~a~~~~~~a~al~-----~~~~~~~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 402 ALSTELDNIVALP-----ELNVLPRIYEILAVQALVKG-KTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHhhhcc-----cCcCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 3333333332220 01112245555555555566 999999999999999985 6678888888899999999999
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 239 i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
.|.+|+. +.+..|...|..-+-| |-|++++..++-+
T Consensus 475 ~~~~A~~--L~P~~pt~~~~~~~~f---~~~~~~~~~~~~~ 510 (517)
T PRK10153 475 AYSTAFN--LRPGENTLYWIENLVF---QTSVETVVPYLYR 510 (517)
T ss_pred HHHHHHh--cCCCCchHHHHHhccc---cccHHHHHHHHHh
Confidence 9999997 4667777666666666 7788887765544
No 166
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.41 E-value=0.018 Score=57.61 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=109.5
Q ss_pred hccchhHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CcccHHHHHHHHHH
Q 013667 70 TLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC-----AFSTFEEYLDLFLT 136 (438)
Q Consensus 70 ~~~~~~~~~~i~erAl~~--------~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~-----~~~~~~~~~~~~~~ 136 (438)
..+..+.+..+|++|++. +|.....-..+.. +....+.+.++..+|++|+.. |..+.. +...+.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~-~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~--va~~l~ 287 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL-VYRSLGKYDEAVNLYEEALTIREEVFGEDHPA--VAATLN 287 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHH
Confidence 345678899999999997 4543333333333 455678899999999999954 222211 111111
Q ss_pred HHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--
Q 013667 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL-RLYAYWAHLEQSMGKDMVSARGVWERLLKIS-- 213 (438)
Q Consensus 137 ~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~-~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~-- 213 (438)
.+..+.-+ -.++......+++|..+..+.+...++.+ ......+.+....+ .++.|..++.++++..
T Consensus 288 nLa~ly~~---------~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 288 NLAVLYYK---------QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-EYEEAKKLLQKALKIYLD 357 (508)
T ss_pred HHHHHHhc---------cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHh
Confidence 11111101 15677788889999998887555444433 34445566666666 7999999999999872
Q ss_pred ------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 214 ------GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 214 ------~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+.-..+...+..+....|.++.|+.+|+.|+++
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 233458888888888999999999999999976
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.0005 Score=44.26 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 013667 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~ 65 (438)
..|..+.......|+++++..+|+++|..+|.++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888998999999999999999999999999999988764
No 168
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.40 E-value=0.00024 Score=71.86 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=35.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCC--CCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDV--GGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..+|||+|||.++|+++|+++|+.| |.|.+|.++ +|||||
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFV 274 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFV 274 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEE
Confidence 3589999999999999999999999 999998765 368987
No 169
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.38 E-value=0.00012 Score=73.42 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=38.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+|||||.||.++++.+|..+|+.||.|.+|.++.. ||||||
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI 462 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFI 462 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEE
Confidence 569999999999999999999999999999987654 689986
No 170
>smart00361 RRM_1 RNA recognition motif.
Probab=97.38 E-value=0.00018 Score=51.72 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=29.5
Q ss_pred HHHHHHHhc----CCCCeeEEE-EeecCCC--CCCcceeeC
Q 013667 405 YEDLRRFFS----DVGGVSSIR-ILHDKFT--GKSRVSFFL 438 (438)
Q Consensus 405 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~~fv 438 (438)
+++|+++|+ .||.|.++. ++.++.+ |+++|||||
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV 42 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYI 42 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEE
Confidence 578899998 999999995 7777666 999999997
No 171
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.00021 Score=67.38 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=42.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCC-eeEEEEeecCC-CCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKF-TGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~-~~~~~g~~fv 438 (438)
+..+|.|||||+|.+-++++|.+.|++.++ |.+|-|..++. +.++||||||
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEE
Confidence 356889999999999999999999999874 56776665543 5789999997
No 172
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.36 E-value=0.00021 Score=62.55 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=47.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+.+...||+|.|..+++.+.|...|.+|-.....++++|+.||+++|||||
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfV 237 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFV 237 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceee
Confidence 456679999999999999999999999998888999999999999999997
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.34 E-value=0.014 Score=59.15 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
|..+...+...+.-++.....|-.+.-.-.+++ +.+.|-+.|.+++...|++.+-|..+....+..|.-.+|+..+..|
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle-k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLE-KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHh-hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 444444444444335555567777666666677 7888888999999888988888988888888888888999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013667 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
++.+ ..+-.+|+.|.-.-...|..++.-.|..+.
T Consensus 580 lKcn---~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 580 LKCN---YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhcC---CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8743 345568888887777777766665555443
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00077 Score=47.88 Aligned_cols=65 Identities=20% Similarity=0.090 Sum_probs=54.4
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHH
Q 013667 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~ 99 (438)
...|+++.|..+|++++..+|.+.++|+.++..+... +..+.+..++++++...|....+|....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3568899999999999999999999999999988755 5678899999999999998766665543
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0056 Score=59.20 Aligned_cols=95 Identities=19% Similarity=0.056 Sum_probs=80.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCH
Q 013667 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (438)
Q Consensus 30 ~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~ 109 (438)
+.-....|++..++.+|++||...|.+..+|...+..+.. .+..+.+...+++|+...|.....|......+. ..+..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCH
Confidence 3444567899999999999999999999999999887764 456778999999999999999999988776554 47889
Q ss_pred HHHHHHHHHHHhCCccc
Q 013667 110 EEISTVFEKSLLCAFST 126 (438)
Q Consensus 110 ~~~~~i~~ral~~~~~~ 126 (438)
+.+...|++++...+..
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999877664
No 176
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.30 E-value=0.00032 Score=40.80 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=21.3
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013667 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (438)
Q Consensus 38 ~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~ 68 (438)
.+++|+.||||.|...| ++..|+.|+.|.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhc
Confidence 35677778888777764 4777888877653
No 177
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.28 E-value=0.27 Score=50.55 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC--CCCHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--PWVGELWVRSL 99 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~--p~~~~lW~~y~ 99 (438)
+..+|....-.....|.+..+...||+++...-...+.|..+.--+...++ ...+..+++..+..- |.......+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcchHHHHHH
Confidence 445677666666777888888888998888777788888888876665544 345778888887766 54444444444
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCcc-----cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHH-HHHHHHHHHHhh
Q 013667 100 LSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR-ETFQRASDYLSE 173 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~~~~~-----~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r-~~f~~a~~~l~~ 173 (438)
..+....+..+++.+.-.+|+...-. ....|.-+-.+|- ...+. .. ....| ..-.++++.++.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~--~~A~~--a~-------~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYG--FQARQ--AN-------LKSERDALHKKSLQALEE 469 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH--hHhhc--CC-------ChHHHHHHHHHHHHHHHH
Confidence 44444455555555555566642110 0111111111111 00000 00 00111 112334444444
Q ss_pred hhc--CCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCC
Q 013667 174 QMK--NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250 (438)
Q Consensus 174 ~~~--~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~ 250 (438)
+.. .+|+ .-++|.-++....++++.|.....+++.. .+++...|.-.+-.....+++..|-.+.+.++.. ++
T Consensus 470 av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~- 544 (799)
T KOG4162|consen 470 AVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FG- 544 (799)
T ss_pred HHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hh-
Confidence 432 2333 33444444433333899999999999999 6788899999999999999999999999999984 22
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhHHHHH
Q 013667 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELR 288 (438)
Q Consensus 251 ~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l~~~~ 288 (438)
..-.++.--+..|..+|+.++ ++..|...|.=++
T Consensus 545 -~N~~l~~~~~~i~~~~~~~e~---~l~t~~~~L~~we 578 (799)
T KOG4162|consen 545 -DNHVLMDGKIHIELTFNDREE---ALDTCIHKLALWE 578 (799)
T ss_pred -hhhhhchhhhhhhhhcccHHH---HHHHHHHHHHHHH
Confidence 223566677788888887544 5666666665444
No 178
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.27 E-value=0.0076 Score=48.27 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccch-HHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAM-LEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~-~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
+.+..+++|+.|+++- . ..+.+|.-+... -+.. ..+|..|+.+....|++..|..||+.+
T Consensus 64 nD~RyLkiWi~ya~~~---~----dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 64 NDPRYLKIWLKYADNC---D----EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred CCHHHHHHHHHHHHhc---C----CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 3445568888888652 2 357788888876 4444 468899999988999999999988753
No 179
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.24 E-value=0.00055 Score=69.86 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=36.8
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHhcCC------------CCeeEEEEeecCCCCCCcceeeC
Q 013667 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDV------------GGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+......++|||||||+.+|+++|..+|..+ +.|..+. .++.+|||||
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afV 228 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFL 228 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEE
Confidence 3445677899999999999999999999975 2333333 3456899997
No 180
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.24 E-value=0.0048 Score=59.66 Aligned_cols=90 Identities=11% Similarity=-0.029 Sum_probs=77.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
.|...|+.+|...|. +...|...+......|+++.+...|++||..+|.+...|......+. ..+..+.+...|+
T Consensus 20 ~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~ 94 (356)
T PLN03088 20 LAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 467789999988886 77889999999999999999999999999999999999999987666 4467788999999
Q ss_pred HHHHcCCCCHHHHHH
Q 013667 83 RATKNCPWVGELWVR 97 (438)
Q Consensus 83 rAl~~~p~~~~lW~~ 97 (438)
+|+...|....+...
T Consensus 95 ~al~l~P~~~~~~~~ 109 (356)
T PLN03088 95 KGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999999987654433
No 181
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.22 E-value=0.012 Score=59.56 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+.+..-|...+-....++ +..+|+..+..+++.+-++..+|..|.-.....|.++.|...|.+.+..
T Consensus 549 ~Pd~~eaWnNls~ayi~~~-~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLK-KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCchhhhhhhhHHHHHHh-hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5667788999988888899 7899999999999998788899999999999999999999999998864
No 182
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.22 E-value=0.28 Score=49.72 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=133.6
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-----GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~-----g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~ 77 (438)
+|...|...|.++|. +...+..|....... .+......+|+..-..+|.+...=.-=+.|+.. ......+
T Consensus 56 eA~~~y~~Li~rNPd----n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-~~F~~~~ 130 (517)
T PF12569_consen 56 EAEKIYRELIDRNPD----NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-DEFKERL 130 (517)
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-HHHHHHH
Confidence 577889999999996 777788887766222 246777889998888888754332222233221 0111234
Q ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----cccH------HHHHHHHHHH-HHHHHHh
Q 013667 78 RDVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTF------EEYLDLFLTR-IDGLRRR 144 (438)
Q Consensus 78 ~~i~erAl~-~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~-----~~~~------~~~~~~~~~~-~~~l~rr 144 (438)
...+.+.++ .+| ++-.. +..+........-+.++++..+... +... ....-+|..+ +.....
T Consensus 131 ~~yl~~~l~KgvP---slF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd- 205 (517)
T PF12569_consen 131 DEYLRPQLRKGVP---SLFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD- 205 (517)
T ss_pred HHHHHHHHhcCCc---hHHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH-
Confidence 444555555 334 34433 2223332222334555555543210 1000 0011122111 111100
Q ss_pred hhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 013667 145 ILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~ 224 (438)
..+.+++|+.+++.++...|..++++..-+++..+.| ++..|-..++.+-..++.+--+=...+
T Consensus 206 ---------------~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 206 ---------------YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred ---------------HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 1134567888888888878888999999999998888 999999999999988776555666778
Q ss_pred HHHHhcccHHHHHHHHHHHHh
Q 013667 225 SMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+..+.|.++.|..++.....
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcC
Confidence 888899999999999888765
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.0018 Score=45.93 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=47.1
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
..| +++.|..+|++++..+|++.++++.++.+....|+++.|+.++++++..
T Consensus 3 ~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQG-DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTT-HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999999999999999999999974
No 184
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.19 E-value=0.00048 Score=64.80 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=43.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhc-CCCCeeEEEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.+.|||+|||+++...+|+.+|. +.|.|..|.|..| .+||+||||.|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavV 91 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVV 91 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEE
Confidence 34699999999999999999997 5899999999999 79999999976
No 185
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.19 Score=46.53 Aligned_cols=219 Identities=9% Similarity=0.099 Sum_probs=119.1
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC---HHHHHH--HHHHHHHccCCHHH
Q 013667 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVR--SLLSLERSRASEEE 111 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~---~~lW~~--y~~~le~~~~~~~~ 111 (438)
.++++++.+|-..+...|...++-+...+...+ -+..++++.|.+--+. -|.- ..+... ..+.+- ..+-.+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs-RGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym-~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRS-RGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYM-AAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHh-cchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHH-HhhhhhH
Confidence 367888888888888888888888877775543 3455656555544333 2321 111111 111111 1234566
Q ss_pred HHHHHHHHHhCCcc---cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 013667 112 ISTVFEKSLLCAFS---TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (438)
Q Consensus 112 ~~~i~~ral~~~~~---~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (438)
++.+|......+-- .....+.+|... .||. .+++-|..+.. ++..+..+.|-.+|
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~t-----------------reW~---KAId~A~~L~k--~~~q~~~~eIAqfy 183 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQAT-----------------REWE---KAIDVAERLVK--LGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHh-----------------hHHH---HHHHHHHHHHH--cCCccchhHHHHHH
Confidence 77777765542211 112222333211 1221 22222222221 11223344555555
Q ss_pred HHHH--HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 013667 189 AHLE--QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (438)
Q Consensus 189 a~~e--~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~ 266 (438)
.++- .....+.++|+..+.+++..+|+.+..=+...+.+...|++..|...++++++.+ ++....+......-=..
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHH
Confidence 5442 2233378888888999988888888777778888888888888888888888742 23333344333333344
Q ss_pred hCCHHHHHHHHHhhhh
Q 013667 267 YGTLEDFDHSVQKVTP 282 (438)
Q Consensus 267 ~G~~~~~~~a~~~~~~ 282 (438)
.|.++....-+.+++.
T Consensus 262 lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 262 LGKPAEGLNFLRRAME 277 (389)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5666666555544433
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.18 E-value=0.014 Score=48.57 Aligned_cols=102 Identities=9% Similarity=-0.072 Sum_probs=87.8
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHH
Q 013667 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (438)
Q Consensus 20 ~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~ 99 (438)
++.++.--.|.......|+++.|..+|+-.+...|.+...|+...-.... .++...+...|.+|+..-|.++.......
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 56788888899989999999999999999999999999999999987664 45778899999999999998888777766
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC
Q 013667 100 LSLERSRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~~~ 123 (438)
. +....++.+.++..|+.|+...
T Consensus 111 ~-c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 E-CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred H-HHHHcCCHHHHHHHHHHHHHHh
Confidence 5 4445788999999999999654
No 187
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0004 Score=66.83 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=45.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+|||.|++..++.+.|+.+|+.||.|.+++|+.+ ..|+++|||||
T Consensus 269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV 316 (369)
T KOG0123|consen 269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFV 316 (369)
T ss_pred cccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEE
Confidence 4458999999999999999999999999999999999 79999999997
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.0013 Score=42.22 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHH
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~ 225 (438)
.+|..+++.+...| +++.|+.+|+++++.+|++..+|..+++
T Consensus 2 ~~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 36888899999999 8999999999999999999999988764
No 189
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.26 Score=47.52 Aligned_cols=185 Identities=14% Similarity=-0.000 Sum_probs=104.5
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 013667 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~ 116 (438)
.++..++.+-..||...-+++..-.+-.+.... .++.+.+...|..|+++-..+.+.-...-...+. .++.+++.+.|
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~-ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~~ldeald~f 547 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFA-NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LGNLDEALDCF 547 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeee-cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hcCHHHHHHHH
Confidence 367777777788887777777666655554443 3566778888888888765555433332222333 56677777777
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcC
Q 013667 117 EKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (438)
Q Consensus 117 ~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (438)
-+.-.....+....+.+-..|- .+ .+-......+.++..++ +....+....++++-+.|
T Consensus 548 ~klh~il~nn~evl~qianiye-~l-------------ed~aqaie~~~q~~sli-------p~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 548 LKLHAILLNNAEVLVQIANIYE-LL-------------EDPAQAIELLMQANSLI-------PNDPAILSKLADLYDQEG 606 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH-Hh-------------hCHHHHHHHHHHhcccC-------CCCHHHHHHHHHHhhccc
Confidence 6644332233333222221110 00 22333334444444432 223346777788877777
Q ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 197 KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 197 ~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|..+|-+.+-.....+|.+.+...-...+.....=.+++...|++|--
T Consensus 607 -dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 607 -DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred -chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 788888888777778888776322222233333335667777777653
No 190
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.19 Score=48.08 Aligned_cols=236 Identities=10% Similarity=0.000 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013667 24 QQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g-~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~l 102 (438)
..|+.-..+.-... .......++-.-....|.|+.|-...++.+...+ +...+.-.|+.+...-|....---.|...|
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G-dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG-DYFQAEDIFSSTLCANPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc-CchHHHHHHHHHhhCChhhhhhHHHHHHHH
Confidence 35665444332222 2233445666667789999999999999777554 556688999999998887655444555434
Q ss_pred HHccCCHHHHHHHHHHHHhCCcccHHHH-----HHHHH----HHHHHHHHhhhcc-cccchh-------h---cHHHHHH
Q 013667 103 ERSRASEEEISTVFEKSLLCAFSTFEEY-----LDLFL----TRIDGLRRRILFS-GEVEGV-------L---DYSLIRE 162 (438)
Q Consensus 103 e~~~~~~~~~~~i~~ral~~~~~~~~~~-----~~~~~----~~~~~l~rr~~~~-~~~~~~-------~---~~~~~r~ 162 (438)
-+ .+..+....+-.+.+.....+...+ ..++. ..+.+...-+... .....+ . -.....-
T Consensus 277 ~~-eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 277 GQ-EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred Hh-ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 43 5667778888777776542211111 11111 1111111111110 011111 0 1112223
Q ss_pred HHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHH---HHHHHhcccHHHHHHH
Q 013667 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY---ISMEIELDHINEARSI 239 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y---~~~e~~~g~~~~ar~i 239 (438)
.|..|... .|..++.+.-.+.-+...+ .+.+|.-+-+.+++.+|.+..-..-+ +-++.- ---++|..+
T Consensus 356 aFR~Aq~L-------ap~rL~~Y~GL~hsYLA~~-~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-~~rEKAKkf 426 (564)
T KOG1174|consen 356 AFRTAQML-------APYRLEIYRGLFHSYLAQK-RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-RMREKAKKF 426 (564)
T ss_pred HHHHHHhc-------chhhHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-hhHHHHHHH
Confidence 34444332 3444555555555445566 78899999999999988877533222 222222 235899999
Q ss_pred HHHHHhcccCCCChHHH--HHHHHHHHHHhCCHHH
Q 013667 240 YKRCYSKRFTGTGSEDI--CHAWLRFEREYGTLED 272 (438)
Q Consensus 240 ~~ral~~~~~~~~~~~i--~~~~~~fE~~~G~~~~ 272 (438)
++++|.. .++....+ .-.....|..+|+.-.
T Consensus 427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 9999984 44444333 2356666777776543
No 191
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.12 E-value=0.00069 Score=62.04 Aligned_cols=45 Identities=29% Similarity=0.397 Sum_probs=39.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+..-.|+|||+|-..+++.+|++.|.+||+|.+++++.. +|+|||
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv 269 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFV 269 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------ccccee
Confidence 455569999999999999999999999999999998875 367876
No 192
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.23 Score=46.01 Aligned_cols=229 Identities=15% Similarity=0.125 Sum_probs=133.2
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHH------HHHHhhccchhHHHHHHHHHHHcCCCCH
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT------QYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~------~~l~~~~~~~~~~~~i~erAl~~~p~~~ 92 (438)
|++.++.-....++-...|..++++.+.+-.+. .|+-..-=...+ +|+. .+-.+.+..+|..-+..--...
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~--aGl~DRAE~~f~~L~de~efa~ 141 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMA--AGLLDRAEDIFNQLVDEGEFAE 141 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHhcchhhhH
Confidence 345677777788877888999999988865554 343221111111 1111 1223444444443333111111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHh
Q 013667 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (438)
Q Consensus 93 ~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~ 172 (438)
..-...+. +.......+.+.++=++....+...+..-|. ..||+... -......+++|...+.
T Consensus 142 ~AlqqLl~-IYQ~treW~KAId~A~~L~k~~~q~~~~eIA--qfyCELAq--------------~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 142 GALQQLLN-IYQATREWEKAIDVAERLVKLGGQTYRVEIA--QFYCELAQ--------------QALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHH-HHHHhhHHHHHHHHHHHHHHcCCccchhHHH--HHHHHHHH--------------HHhhhhhHHHHHHHHH
Confidence 22222222 2333344455555555555544443322222 22333221 1122345566667777
Q ss_pred hhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCC
Q 013667 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251 (438)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~-~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~ 251 (438)
+++..++.+++.-+...+++...| ++..|.+.|+.++..+|.... +-..........|+.+.....+.++... ..
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g-~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-~~-- 280 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKG-DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-NT-- 280 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhcc-chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-cC--
Confidence 776667788888889999999999 999999999999999998764 6666666777889999999999999983 23
Q ss_pred ChHHHHHHHHHHHHHhCCHH
Q 013667 252 GSEDICHAWLRFEREYGTLE 271 (438)
Q Consensus 252 ~~~~i~~~~~~fE~~~G~~~ 271 (438)
.++.+...+--.|...|..+
T Consensus 281 g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 281 GADAELMLADLIELQEGIDA 300 (389)
T ss_pred CccHHHHHHHHHHHhhChHH
Confidence 33334434444445555433
No 193
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.10 E-value=0.0015 Score=59.87 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=38.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeE--------EEEeecCCCCCCccee
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVSF 436 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~ 436 (438)
-++.|||+|||.++|-+++..+|+.||.|.+ |+|-++ ..|+.+|=|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDa 186 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDA 186 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCce
Confidence 3457999999999999999999999998864 667777 468888854
No 194
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00046 Score=63.17 Aligned_cols=47 Identities=32% Similarity=0.450 Sum_probs=45.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.-+||.-|.+-+|.++|.-+|+.||.|.+|.|++|..||-+--||||
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFi 286 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFI 286 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeee
Confidence 38999999999999999999999999999999999999999999997
No 195
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.05 E-value=0.39 Score=49.39 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHH
Q 013667 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV--SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~--~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~ 238 (438)
++.+.+|...+..++.-+|.++......+.+....| +.. ..|.+...+++.+|.+.+.|.......+..|+.+.|..
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 344445555444444434445555555566555555 333 33447777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 013667 239 IYKRCYS 245 (438)
Q Consensus 239 i~~ral~ 245 (438)
+|.-|++
T Consensus 776 cf~aa~q 782 (799)
T KOG4162|consen 776 CFQAALQ 782 (799)
T ss_pred HHHHHHh
Confidence 7777765
No 196
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.99 E-value=0.0063 Score=45.04 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
..|..++...+...+....+|...+.+....+ +++.|...|+.++...|....+|...+.+....|+++.|..++.+++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444433323333356666777776667 78888888888888777777777777777777788888888888877
Q ss_pred h
Q 013667 245 S 245 (438)
Q Consensus 245 ~ 245 (438)
.
T Consensus 96 ~ 96 (100)
T cd00189 96 E 96 (100)
T ss_pred c
Confidence 5
No 197
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.95 E-value=0.0011 Score=59.20 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceee
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFF 437 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~f 437 (438)
.-.++|+|.|||+.|++.||+++|..||.+..+-|-++ ..|++.|.|=
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~ 128 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTAD 128 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccce
Confidence 34468999999999999999999999999999999998 5899999874
No 198
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.95 E-value=0.052 Score=46.55 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
....+...+......|+++.+...|++++...|.. ..+|...+..+. ..+..+.+...|++|+...|.....|..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44467777777778899999999999999876653 457777776555 34577889999999999999888888777
Q ss_pred HHHHHH
Q 013667 99 LLSLER 104 (438)
Q Consensus 99 ~~~le~ 104 (438)
...+..
T Consensus 113 g~~~~~ 118 (172)
T PRK02603 113 AVIYHK 118 (172)
T ss_pred HHHHHH
Confidence 665443
No 199
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.92 E-value=0.037 Score=43.70 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC---HHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRS 98 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~---~~lW~~y 98 (438)
.+..-+......|+++.+...|++++..+|.+ ...+..++..+... +..+.+...|++++...|.. ..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45566666778899999999999999988876 46777777666543 45677999999999988764 4677777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
...+.. .+..+.+...|.+++...+.
T Consensus 83 ~~~~~~-~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQE-LGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHH-hCChHHHHHHHHHHHHHCcC
Confidence 665554 67788899999999876655
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0073 Score=43.43 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 191 ~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
+....+ +++.|.+++++++..+|+++.+|..+..+....|++..|...|++++..
T Consensus 4 ~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344566 8999999999999999999999999999999999999999999999984
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.048 Score=49.98 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCC--HHHHHHHH
Q 013667 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS--EEEISTVF 116 (438)
Q Consensus 39 ~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~--~~~~~~i~ 116 (438)
++....-.+..|..+|.+.+-|.......... ++...+...|.+|++.-|...++|..|...+....+. ..+++.+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 45667788899999999999999998876654 3556688999999999999999999999877764433 35567777
Q ss_pred HHHHhCCcc
Q 013667 117 EKSLLCAFS 125 (438)
Q Consensus 117 ~ral~~~~~ 125 (438)
.+++..++.
T Consensus 217 ~~al~~D~~ 225 (287)
T COG4235 217 RQALALDPA 225 (287)
T ss_pred HHHHhcCCc
Confidence 777765443
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0051 Score=44.27 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=51.2
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHH
Q 013667 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL 94 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~l 94 (438)
...++++.+..++++++..+|.++.+|..++..+... +....+...|++++..+|.....
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHH
Confidence 4578899999999999999999999999999987754 56677999999999999976543
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.031 Score=51.18 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=92.2
Q ss_pred hHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--cchhHHHHHHHHH
Q 013667 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVYSRA 84 (438)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~i~erA 84 (438)
..|..|..+|. +.+.|.-....-...|+...+...|.+|+...|.++++|..|...+.... .....+..+|.+|
T Consensus 144 ~Le~~L~~nP~----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 144 RLETHLQQNPG----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHhCCC----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 45777888886 88899999999999999999999999999999999999999999887543 2445689999999
Q ss_pred HHcCCCCH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 85 TKNCPWVG-ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 85 l~~~p~~~-~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
++.-|... .+|.--+..++ .++..++...++..+...++
T Consensus 220 l~~D~~~iral~lLA~~afe--~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 220 LALDPANIRALSLLAFAAFE--QGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcCCC
Confidence 99887654 45554444444 58889999999998876554
No 204
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.83 E-value=0.00089 Score=62.00 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=46.2
Q ss_pred CCCCceEE-EeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAF-LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~-v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
.....++| |+||++++++++|+..|..||.|..++++.++.+|.++|||||
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~ 232 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYV 232 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhh
Confidence 34455666 9999999999999999999999999999999999999999986
No 205
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.11 Score=48.04 Aligned_cols=216 Identities=10% Similarity=0.102 Sum_probs=136.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHH
Q 013667 32 YEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (438)
Q Consensus 32 ~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~ 111 (438)
.....|-+.++...+.-+|...|.-. .++-..+ +....+.+..+..+|...+..+|....+-..-++..|. .+..++
T Consensus 232 CylrLgm~r~AekqlqssL~q~~~~d-TfllLsk-vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~ 308 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQFPHPD-TFLLLSK-VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQED 308 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhcCCchh-HHHHHHH-HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHH
Confidence 33456788899999999999987543 3332223 22234567889999999999999988888887775554 456778
Q ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q 013667 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (438)
Q Consensus 112 ~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (438)
+.++|.+++...+.+++....+-..+. .. ..-+.....|.+.++. +-...+++...+-.
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yf--------Y~------~~PE~AlryYRRiLqm-------G~~speLf~NigLC 367 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYF--------YD------NNPEMALRYYRRILQM-------GAQSPELFCNIGLC 367 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccc--------cC------CChHHHHHHHHHHHHh-------cCCChHHHhhHHHH
Confidence 899999988765543322111000000 00 0001111222222221 12222355554433
Q ss_pred HHHcCCCHHHHHHHHHHHHHh--ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013667 192 EQSMGKDMVSARGVWERLLKI--SGAM-LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (438)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~--~~~~-~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (438)
-...+ .++-+..-|++++.. .|.. .++|..........||+.-|..+|+-||.. ......-+....-++..-|
T Consensus 368 C~yaq-Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 368 CLYAQ-QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHhhc-chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcC
Confidence 33334 788899999999988 4544 479998888888899999999999999973 2334455566677788888
Q ss_pred CHHHHHH
Q 013667 269 TLEDFDH 275 (438)
Q Consensus 269 ~~~~~~~ 275 (438)
+++..+.
T Consensus 444 ~i~~Ars 450 (478)
T KOG1129|consen 444 DILGARS 450 (478)
T ss_pred chHHHHH
Confidence 8776543
No 206
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.81 E-value=0.041 Score=53.44 Aligned_cols=98 Identities=16% Similarity=-0.030 Sum_probs=58.0
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
++..+-..|...|. +.-.|.--.+.....+....+...|++++...|.++-+|+.|.+.+..- +.+..+..++.+
T Consensus 325 A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~-g~~~eai~~L~~ 399 (484)
T COG4783 325 ALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG-GKPQEAIRILNR 399 (484)
T ss_pred HHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-CChHHHHHHHHH
Confidence 34444444445553 4434444455555566666666677777776666666777776666533 334456666666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcc
Q 013667 84 ATKNCPWVGELWVRSLLSLERSR 106 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~ 106 (438)
.+...|.....|...++.++..+
T Consensus 400 ~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 400 YLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC
Confidence 66666666666666666555533
No 207
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.78 E-value=0.00031 Score=68.15 Aligned_cols=52 Identities=29% Similarity=0.427 Sum_probs=49.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..++..|||+-.|+-.++.-+|.++|+.+|.|.+|+++.|+.+++++|.|||
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yv 226 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYV 226 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEE
Confidence 3467889999999999999999999999999999999999999999999997
No 208
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.77 E-value=0.28 Score=45.77 Aligned_cols=259 Identities=14% Similarity=0.086 Sum_probs=140.9
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
++.+.+.-.+...-....|.+..+..-|-.||..+|+++.....-+.....-++. ..+..=+.|.|..-|.....-+..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-k~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-KAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-ccchhhHHHHHhcCccHHHHHHHh
Confidence 3456666777777666778888899999999999998876555444332222222 336677888888888655555554
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCccc---HHHHHHHHHH-----HHHHHHH---------------hhhcccccchhh
Q 013667 99 LLSLERSRASEEEISTVFEKSLLCAFST---FEEYLDLFLT-----RIDGLRR---------------RILFSGEVEGVL 155 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~~---~~~~~~~~~~-----~~~~l~r---------------r~~~~~~~~~~~ 155 (438)
...+-+ .+..+.+..-|...|...++. .+.+-.+-+. ....+.. .++....|+.
T Consensus 113 g~vllK-~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda-- 189 (504)
T KOG0624|consen 113 GVVLLK-QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA-- 189 (504)
T ss_pred chhhhh-cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh--
Confidence 443443 677888888899888776641 1111111000 0000000 0000001110
Q ss_pred cHHHHH-HHH------HHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013667 156 DYSLIR-ETF------QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 156 ~~~~~r-~~f------~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
.+-.+| ..| ..|+.-+..+.+....+.+.+-..+++++..| +.+.+......+|+.+|+.-..+-.|-++-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg-d~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG-DAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh-hHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 000111 111 22332222222211122345556788888999 8999999999999999987665555544322
Q ss_pred ------------hcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013667 229 ------------ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 229 ------------~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
..+++..|....++.+.. .+..+..-+..+--++.++...+.+-+|++.|...|
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 224566666777777753 222222223344445555555555555666555544
No 209
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.77 E-value=0.00092 Score=59.77 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.++++||||.+.++.++|+..|+++|+|.++.|+.|
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd 113 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD 113 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc
Confidence 458999999999999999999999999999999876
No 210
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.77 E-value=0.0028 Score=63.44 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=42.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCC---CCCCcceeeC
Q 013667 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRVSFFL 438 (438)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~~fv 438 (438)
.++...+++|||||++.+++..|-..|..||+|.+++++..+. ..+.+-||||
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfv 224 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFV 224 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcccccccee
Confidence 3455677999999999999999999999999999999997643 2334456665
No 211
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.71 E-value=0.036 Score=53.81 Aligned_cols=113 Identities=9% Similarity=-0.042 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
..++.|+..|...+.+.|.+.-+|....++....+ ....|.+.+++++...|+..-+|+.|.+.....|++.+|..+++
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n-k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN-KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 34466777777777777777778888899999999 89999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013667 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (438)
Q Consensus 242 ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~ 278 (438)
+.+.. .+++| ..|....+=+...|+......|..
T Consensus 399 ~~~~~--~p~dp-~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 399 RYLFN--DPEDP-NGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHhhc--CCCCc-hHHHHHHHHHHHhCchHHHHHHHH
Confidence 99974 33444 788888888888888766655543
No 212
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.69 E-value=0.026 Score=46.93 Aligned_cols=81 Identities=10% Similarity=-0.031 Sum_probs=68.7
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
+|...|+-.+.-.|. +...|..+.-.....|++..++..|.+|+...|+++..-..-..-+. ..++.+.++..|+
T Consensus 53 ~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L-~lG~~~~A~~aF~ 127 (157)
T PRK15363 53 GAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL-ACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 355666666666665 88899999999999999999999999999999999998887776555 4567788999999
Q ss_pred HHHHcC
Q 013667 83 RATKNC 88 (438)
Q Consensus 83 rAl~~~ 88 (438)
.||..|
T Consensus 128 ~Ai~~~ 133 (157)
T PRK15363 128 AVVRIC 133 (157)
T ss_pred HHHHHh
Confidence 999988
No 213
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.023 Score=51.91 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013667 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~ 105 (438)
...=.+-..+.+++..|+..|.+||...|.+.-++.+-+.-+. .++..+.+..-++.||+.-|++...|...-..+ ..
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~-~~ 161 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY-LA 161 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH-Hc
Confidence 3333344455678999999999999999999999999887655 445667789999999999999999998866544 45
Q ss_pred cCCHHHHHHHHHHHHhCCccc
Q 013667 106 RASEEEISTVFEKSLLCAFST 126 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~~ 126 (438)
.+.++++..-|.+||...+..
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 677888888899999988763
No 214
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.62 E-value=0.0042 Score=47.22 Aligned_cols=47 Identities=21% Similarity=0.105 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcC--CCCeeEEEEeecCCCCCCcceeeC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSD--VGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+||-|.|+|...|..+|.+++.. .|...-+.++.|-.++-+.|||||
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFV 50 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFV 50 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEE
Confidence 69999999999999999988875 366667789999888889999997
No 215
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.58 E-value=0.013 Score=43.51 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
...+|...+......| ++++|..++++ +...+.+..+..-++......|+++.|+.+|+++
T Consensus 24 ~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3446666788888888 89999999998 6667777776666688888889999999998875
No 216
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.55 Score=42.20 Aligned_cols=94 Identities=7% Similarity=0.079 Sum_probs=68.6
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHH
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~ 257 (438)
.++..++|...+-.+.+.| +.+.||.-|.++++..|+...+-....-+....|+++.|+.++.++.. .......|-
T Consensus 130 ~p~d~~~~~~lgaaldq~G-r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l---~~~ad~~v~ 205 (257)
T COG5010 130 APTDWEAWNLLGAALDQLG-RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL---SPAADSRVR 205 (257)
T ss_pred CCCChhhhhHHHHHHHHcc-ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh---CCCCchHHH
Confidence 3444556666666667788 899999999999999888888777777777788999999999999886 233344666
Q ss_pred HHHHHHHHHhCCHHHHHH
Q 013667 258 HAWLRFEREYGTLEDFDH 275 (438)
Q Consensus 258 ~~~~~fE~~~G~~~~~~~ 275 (438)
+...---...|+...-++
T Consensus 206 ~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 206 QNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHhhcCChHHHHh
Confidence 666666666677655544
No 217
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.49 E-value=0.065 Score=52.14 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
++.|++++.+.....+. ++...|++....+ +-.+|..+++++++.+|.++.+....++|....++++.|..+.++|
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555555554433332 3444555555555 5667777888888777777777778888888778788888888888
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHh
Q 013667 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (438)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~ 279 (438)
+.. . | .-+..|..+-+.|=..++++.|+.-
T Consensus 261 v~l--s---P-~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 261 VEL--S---P-SEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHh--C---c-hhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 762 1 1 3345566666666555555555533
No 218
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.45 E-value=0.8 Score=42.89 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.++..-+..+...| ++..|..=+..+-+...++.+......+++-..|+.+.+....+.+|.
T Consensus 190 ~l~~~Rakc~i~~~-e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 190 SLRQARAKCYIAEG-EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 34444455444555 566666555555555555566555556666566666666666666664
No 219
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.42 E-value=0.52 Score=44.00 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=79.1
Q ss_pred hcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc----h--H-HHHHHHHHHH
Q 013667 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA----M--L-EAWQSYISME 227 (438)
Q Consensus 155 ~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~----~--~-~~W~~y~~~e 227 (438)
.+++.....|.+|.+++...- .......+....+.+...++ +++.|.++|+++.....+ . + ..++..+-+.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 467778888999988876431 11223467788899999999 999999999999986321 1 2 3566666666
Q ss_pred HhcccHHHHHHHHHHHHhc--ccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhh
Q 013667 228 IELDHINEARSIYKRCYSK--RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (438)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~--~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~ 280 (438)
...||+..|+..|++.... .|..+.--.++...++= -+.||.+.+..++..+
T Consensus 207 L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 207 LAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 7789999999999999863 12221112333333332 2367888888777554
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=96.41 E-value=0.24 Score=48.43 Aligned_cols=171 Identities=13% Similarity=0.020 Sum_probs=100.4
Q ss_pred HHHcCCCCH---HHH--HHHHHHHHH----ccCCHHHHHHHHHHHH---hCCcccHHHHHHHHHHHHHHHHHhhhccccc
Q 013667 84 ATKNCPWVG---ELW--VRSLLSLER----SRASEEEISTVFEKSL---LCAFSTFEEYLDLFLTRIDGLRRRILFSGEV 151 (438)
Q Consensus 84 Al~~~p~~~---~lW--~~y~~~le~----~~~~~~~~~~i~~ral---~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~ 151 (438)
+.+.-|.+. .-| ..|++-+.. ...+.+.+..+|.+|+ ...+.....|.. +++|...+.-..... .
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~--lA~~h~~~~~~g~~~-~ 316 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCL--LAECHMSLALHGKSE-L 316 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHH--HHHHHHHHHHhcCCC-c
Confidence 333446666 778 666664433 1223466788899999 444432222222 223222211111111 1
Q ss_pred chhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc
Q 013667 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (438)
Q Consensus 152 ~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g 231 (438)
..+....+..-++|.+. ...|+. ..-..+.+....+ +.+.|...|++++..+|+....|..+.-...-.|
T Consensus 317 --~~~~~~a~~~A~rAvel-----d~~Da~--a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 317 --ELAAQKALELLDYVSDI-----TTVDGK--ILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred --hHHHHHHHHHHHHHHhc-----CCCCHH--HHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 12233333444444442 123332 3333444555667 6999999999999999999999988888888899
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013667 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (438)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (438)
+.+.|+..+++|+... |......+...|++.-..+|
T Consensus 387 ~~~~a~~~i~~alrLs-P~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 387 KIEEARICIDKSLQLE-PRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred CHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHcCCc
Confidence 9999999999999742 33333457777885443344
No 221
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.34 E-value=0.43 Score=42.91 Aligned_cols=179 Identities=14% Similarity=0.027 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013667 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (438)
Q Consensus 42 ~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~ 121 (438)
+...+=+....+|.+.++ ..+..-+...+ +.+....+...+.-..|....+-..++...-+ .+++..+...|.++..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G-~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRG-DADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcc-cccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhc
Confidence 455555677778888888 77777665443 33334455555555556666677667764443 6778888888888887
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHH
Q 013667 122 CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS 201 (438)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ 201 (438)
..++.+..+-.+-..+ + + ..++...|..|.+++++... .+ .+....+-...-.| |.+.
T Consensus 129 l~p~d~~~~~~lgaal-d----q---------~Gr~~~Ar~ay~qAl~L~~~----~p---~~~nNlgms~~L~g-d~~~ 186 (257)
T COG5010 129 LAPTDWEAWNLLGAAL-D----Q---------LGRFDEARRAYRQALELAPN----EP---SIANNLGMSLLLRG-DLED 186 (257)
T ss_pred cCCCChhhhhHHHHHH-H----H---------ccChhHHHHHHHHHHHhccC----Cc---hhhhhHHHHHHHcC-CHHH
Confidence 7666554433322211 0 1 14566777888888776421 22 13333333333445 8999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 202 ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 202 ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|+.++..+....+....+=...+-.....|++..|+.|-..=+.
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 99999999887776666666777777788999999888665443
No 222
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.31 E-value=1.6 Score=45.54 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHHhcccHHHHHHHH------HHHHhccc--------------C--C-CCh-----HHHHHHHHHHHH
Q 013667 214 GAMLEAWQSYISMEIELDHINEARSIY------KRCYSKRF--------------T--G-TGS-----EDICHAWLRFER 265 (438)
Q Consensus 214 ~~~~~~W~~y~~~e~~~g~~~~ar~i~------~ral~~~~--------------~--~-~~~-----~~i~~~~~~fE~ 265 (438)
.+++++...-++|..++.++++|..++ .+|+.... . . +.| ..+++...+|+.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 345778888999998888898888774 44543200 0 0 111 268899999999
Q ss_pred HhCCHHHHHHHHHhhhhhHHHH
Q 013667 266 EYGTLEDFDHSVQKVTPRLEEL 287 (438)
Q Consensus 266 ~~G~~~~~~~a~~~~~~~l~~~ 287 (438)
..|+.. .|.+|...+=.++
T Consensus 1157 qQG~Yh---~AtKKfTQAGdKl 1175 (1416)
T KOG3617|consen 1157 QQGAYH---AATKKFTQAGDKL 1175 (1416)
T ss_pred hccchH---HHHHHHhhhhhHH
Confidence 999854 3455544444443
No 223
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.30 E-value=0.0052 Score=54.13 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT 429 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 429 (438)
.-||++|||+.+....|+++|+.||.|.+|.|-....+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 48999999999999999999999999999988765433
No 224
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.20 E-value=0.27 Score=39.28 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC---CHHHHHHHH
Q 013667 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW---VGELWVRSL 99 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~---~~~lW~~y~ 99 (438)
+..........|+.++++.+|++++..-... ...++.+..-+. +.+..+.+..+++.++..+|. +..++.-+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 3344445567899999999999999964433 468888888766 556788899999999999987 778888877
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 013667 100 LSLERSRASEEEISTVFEKSLL 121 (438)
Q Consensus 100 ~~le~~~~~~~~~~~i~~ral~ 121 (438)
..+.. .+..+++...+-.++.
T Consensus 83 l~L~~-~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYN-LGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH-CCCHHHHHHHHHHHHH
Confidence 76665 4555666666666554
No 225
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.20 E-value=0.61 Score=49.52 Aligned_cols=90 Identities=11% Similarity=-0.029 Sum_probs=73.5
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--cCCHH
Q 013667 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS--RASEE 110 (438)
Q Consensus 33 e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~--~~~~~ 110 (438)
+..+.+++.++..-+++|+.+|+|+..|......+.....+.+++..-|-.|.+.-|...-.|......+++. ..+.+
T Consensus 12 al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld 91 (1238)
T KOG1127|consen 12 ALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLD 91 (1238)
T ss_pred HHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhh
Confidence 3456688888999999999999999999999999887777788999999999999999888998887766662 23356
Q ss_pred HHHHHHHHHHhC
Q 013667 111 EISTVFEKSLLC 122 (438)
Q Consensus 111 ~~~~i~~ral~~ 122 (438)
++-.+|.+++..
T Consensus 92 ~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 92 RAAKCYQRAVLI 103 (1238)
T ss_pred HhHHHHHHHHHh
Confidence 677888887754
No 226
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.91 Score=42.69 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchH
Q 013667 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML 217 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~ 217 (438)
+..+|.-|++|+++....+.+++...-+-.+.|-...++. -++-+.+++.-.+..+|++.
T Consensus 160 vhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 160 VHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcH
Confidence 4567888999999888877655554434334444445555 67888888888888888764
No 227
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.10 E-value=0.0064 Score=61.07 Aligned_cols=46 Identities=37% Similarity=0.447 Sum_probs=39.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCC----CcceeeC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK----SRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~----~~g~~fv 438 (438)
+++||.||++++|.+++...|...|.|.++.|...+ .+. |.|||||
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFV 565 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFV 565 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEE
Confidence 349999999999999999999999999999888764 332 5599997
No 228
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.10 E-value=0.0061 Score=59.96 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=47.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....+.+|||+||...++..+.++...||++...+++.+..+|.++||||.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ 336 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFC 336 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeee
Confidence 345679999999999999999999999999999999999999999999984
No 229
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.09 E-value=0.13 Score=50.14 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=63.3
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
+...||......|. ++.-.+......++-..++.+..++|..+|.+..++...+.|+.... ..+.|..+.++
T Consensus 188 ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-~~~lAL~iAk~ 259 (395)
T PF09295_consen 188 AIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK-KYELALEIAKK 259 (395)
T ss_pred HHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 34445555544442 23333444444555667777777777777777777777777777543 34667777777
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 013667 84 ATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~ 114 (438)
|+...|.....|...+..+. ..++++.+.-
T Consensus 260 av~lsP~~f~~W~~La~~Yi-~~~d~e~ALl 289 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYI-QLGDFENALL 289 (395)
T ss_pred HHHhCchhHHHHHHHHHHHH-hcCCHHHHHH
Confidence 77777777777777666433 3455555443
No 230
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.08 E-value=0.39 Score=39.73 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
..+..+.+....+ +++.|..+++.. ...+-...++.-..+.....|+.+.|+..|++||
T Consensus 87 a~l~LA~~~~~~~-~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQG-QYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3444566666666 677777777552 2222333455556666666777777777777664
No 231
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.90 E-value=0.035 Score=41.21 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=55.9
Q ss_pred cCChhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHH
Q 013667 36 SGDPGRVQLLYERAITDFPV--SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~--~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~ 113 (438)
.|+++.|+.+|++++...|. +...|...+..+.. .+..+.+..++++ ...-|.....+..+++.+.. .+..+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 57888999999999999885 46677766665553 3566778888888 55555554555555665554 67788888
Q ss_pred HHHHHH
Q 013667 114 TVFEKS 119 (438)
Q Consensus 114 ~i~~ra 119 (438)
.+|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888775
No 232
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.87 E-value=0.35 Score=37.89 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=29.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 192 EQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~---~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....+ +++.|.+.|+.++..+|+. ...+..+.......|+++.|..+|++++.
T Consensus 12 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 12 VLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33444 5666666666666555443 23444555555555666666666666654
No 233
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.75 E-value=0.34 Score=41.22 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
....|...+......|+++.+...|++|+...|.+ ..+|......+. ..+..+.+...|++|+...|.....|...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45578888888888999999999999999876653 347877766555 44677889999999999999888777766
Q ss_pred HHHHH
Q 013667 99 LLSLE 103 (438)
Q Consensus 99 ~~~le 103 (438)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55333
No 234
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.73 E-value=0.18 Score=46.38 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+...+.+....+ +++.|...|.++++.+|++ .+.|...+......|+.+.|+.+|++++.
T Consensus 182 A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444555555 6666666666666665543 34554444455555666666666666665
No 235
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.085 Score=48.28 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
.-|+.|+..+..++.-.|...-++..-|..+.++| .++.|.+-.+.+|..+|+....|...-......|++..|..-|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 33455555555555445555557777788888999 89999999999999999999999888888888999999999999
Q ss_pred HHHhcccCCCCh
Q 013667 242 RCYSKRFTGTGS 253 (438)
Q Consensus 242 ral~~~~~~~~~ 253 (438)
+||. +.+++.
T Consensus 174 KaLe--ldP~Ne 183 (304)
T KOG0553|consen 174 KALE--LDPDNE 183 (304)
T ss_pred hhhc--cCCCcH
Confidence 9997 455443
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.67 E-value=0.097 Score=38.04 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---ccch----HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SGAM----LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~~~----~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
..++...+.+....| ++++|...|++++.. .++. ...+.....+....|+++.|...|++|+.
T Consensus 5 a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677788888888 899999999999976 3322 34666777778888999999999999986
No 237
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=95.62 E-value=0.0088 Score=56.56 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=38.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcc
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRV 434 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g 434 (438)
.+..|+|||.|||+++|...|++-|..||.|..+.|+ ..|+++|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG 576 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG 576 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc
Confidence 4678899999999999999999999999999988883 3677877
No 238
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.51 E-value=0.74 Score=39.32 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~ 232 (438)
.++...+.+....| +++.|...|++++...|+....|..+.......|+
T Consensus 73 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNG-EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 46666777777788 89999999999999988887777666666655554
No 239
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.49 E-value=0.0081 Score=55.11 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCC--CeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+....+|||||-+.+|.+||-+.+...| .+.++++..++.+|.|||||.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~ 129 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALL 129 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEE
Confidence 4455899999999999999998888776 5677888888889999999975
No 240
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.43 E-value=0.69 Score=47.03 Aligned_cols=173 Identities=13% Similarity=0.039 Sum_probs=96.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--cCC-----HHHHHHH
Q 013667 47 ERAITDFPVSSDLWLDYTQYLDKTL----KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS--RAS-----EEEISTV 115 (438)
Q Consensus 47 ERal~~~p~~~~lW~~Y~~~l~~~~----~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~--~~~-----~~~~~~i 115 (438)
+|+...-|.+.+.|-.|+.-...-. .....++.+|++|+..-|.....|.......... ... ...+...
T Consensus 327 ~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 327 ERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3444556778888888876543211 2345688899999999998877766643322111 111 2334444
Q ss_pred HHHHHhCCc--ccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 013667 116 FEKSLLCAF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (438)
Q Consensus 116 ~~ral~~~~--~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (438)
..+++..+. .....+..+-... .. ..++......|++|+.. .+. ...|...+.+..
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~--~~------------~g~~~~A~~~l~rAl~L-------~ps-~~a~~~lG~~~~ 464 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQA--LV------------KGKTDEAYQAINKAIDL-------EMS-WLNYVLLGKVYE 464 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHH--Hh------------cCCHHHHHHHHHHHHHc-------CCC-HHHHHHHHHHHH
Confidence 555444321 1111111110000 00 03444455555555553 443 457888888888
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHH-HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 194 SMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~-~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
..| +.+.|...|++++..+|.... +|..=+-|. -+++...-.+.+++.
T Consensus 465 ~~G-~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~---~~~~~~~~~~~~~~~ 513 (517)
T PRK10153 465 LKG-DNRLAADAYSTAFNLRPGENTLYWIENLVFQ---TSVETVVPYLYRFLA 513 (517)
T ss_pred HcC-CHHHHHHHHHHHHhcCCCCchHHHHHhcccc---ccHHHHHHHHHhccC
Confidence 888 899999999999999887653 444433343 344555555555543
No 241
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=0.018 Score=56.40 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=38.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+....+|+|-|||.++++++|..+|+.||+|+.|+. |-..+|.+||
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v 117 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFV 117 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEE
Confidence 456679999999999999999999999999999754 3345666665
No 242
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.37 E-value=1.1 Score=41.98 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 013667 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~ 261 (438)
..+..-|+.+-.-- +.+..|-.+|+.+...++..+.+....+-..+..|+++.|..++..|+.. .+..|+ .+-..+
T Consensus 167 ~qLa~awv~l~~g~-e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d-~LaNli 242 (290)
T PF04733_consen 167 TQLAEAWVNLATGG-EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPD-TLANLI 242 (290)
T ss_dssp HHHHHHHHHHHHTT-TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHH-HHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHH-HHHHHH
Confidence 45555566554322 26888999999988778888888888888888889999999999998874 344454 444556
Q ss_pred HHHHHhCCH-HHHHHHH
Q 013667 262 RFEREYGTL-EDFDHSV 277 (438)
Q Consensus 262 ~fE~~~G~~-~~~~~a~ 277 (438)
-.....|.. +.+.+.+
T Consensus 243 v~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYL 259 (290)
T ss_dssp HHHHHTT-TCHHHHHHH
T ss_pred HHHHHhCCChhHHHHHH
Confidence 666777766 4444433
No 243
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.31 E-value=1.2 Score=41.51 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhc---cc---hHHHHHHHHHHHH
Q 013667 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-GKDMVSARGVWERLLKIS---GA---MLEAWQSYISMEI 228 (438)
Q Consensus 156 ~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~~~~~~ar~i~e~~l~~~---~~---~~~~W~~y~~~e~ 228 (438)
+...+...|++|+.++... +.......+....+.+.... + +++.|.+.|++++..+ +. ...+....+.+..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~-G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREA-GRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHC-T-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3444556677777765432 11223345777788887777 6 9999999999999872 21 1358889999999
Q ss_pred hcccHHHHHHHHHHHHhcccCCCChH-HHHHHH---HHHHHHhCCHHHHHHHHHhhh
Q 013667 229 ELDHINEARSIYKRCYSKRFTGTGSE-DICHAW---LRFEREYGTLEDFDHSVQKVT 281 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~~~~~~~~~~-~i~~~~---~~fE~~~G~~~~~~~a~~~~~ 281 (438)
..|+++.|..+|++.....+..+... .+-..+ +-.-...|++...+.++.++.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999987432222111 111112 122233477777777776654
No 244
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.28 E-value=1.9 Score=37.96 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~ 92 (438)
.+-.-+......|+...++..|++.+..+|.++ .+|+.++.|.. ++...+...|++.++.+|.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~---~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ---GDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCc
Confidence 344445556678999999999999999988764 56776666533 456779999999999999865
No 245
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.24 E-value=3.4 Score=44.23 Aligned_cols=184 Identities=10% Similarity=0.001 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHH--HH-HH
Q 013667 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE--EY-LD 132 (438)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~--~~-~~ 132 (438)
....|..|+.... +...+...|=||++.-|.....|.-.-.++.. ..+-..++..|.+|+..+...+. .+ .+
T Consensus 460 ~~~~w~a~~~~rK----~~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~ad 534 (1238)
T KOG1127|consen 460 NSEFWVALGCMRK----NSALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASAD 534 (1238)
T ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Confidence 4456666654332 23456677777777777666666654443322 22445567777777765443111 11 11
Q ss_pred HH------HHHHHHHHHhhhcccccchhhcHHH------HHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHH
Q 013667 133 LF------LTRIDGLRRRILFSGEVEGVLDYSL------IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV 200 (438)
Q Consensus 133 ~~------~~~~~~l~rr~~~~~~~~~~~~~~~------~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~ 200 (438)
.+ ......+-+.............|-. -...+..++..+..++-..|..+..|.-..+.+...| .+.
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG-ry~ 613 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG-RYS 613 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC-cee
Confidence 11 0000000000000000000000000 0011233444444444446667788888888888888 689
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 201 SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 201 ~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.|.++|.++....|.+.-.-..-+-++...|.+..+..++...+.
T Consensus 614 ~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999888886543222334466677888888887776664
No 246
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.20 E-value=0.56 Score=43.16 Aligned_cols=98 Identities=10% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHHHH-HHHhcCChhhHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC---HHH
Q 013667 24 QQYMIYLK-YEQSSGDPGRVQLLYERAITDFPVS-----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GEL 94 (438)
Q Consensus 24 ~~w~~Y~~-~e~~~g~~~~~~~~yERal~~~p~~-----~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~---~~l 94 (438)
..|..++. +....|+++.+...|+..|..+|.+ ...|+-.+.|. .++.+.+...|++++..+|.+ .+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~---~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN---KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 44444444 3356789999999999999999987 34555555442 356678999999999988864 566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 95 WVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
|......+. ..++.+.+..+|++++...+.
T Consensus 220 l~klg~~~~-~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQ-DKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCcC
Confidence 666555444 367889999999998875554
No 247
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.17 E-value=0.82 Score=37.79 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=9.7
Q ss_pred cCChhhHHHHHHHHHhcCCCC
Q 013667 36 SGDPGRVQLLYERAITDFPVS 56 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~ 56 (438)
.++...+...++..+..+|.+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s 44 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS 44 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
Confidence 344444444444444444444
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.11 E-value=0.026 Score=33.83 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=30.2
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccHHHHH
Q 013667 205 VWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (438)
Q Consensus 205 i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar 237 (438)
.|+++|+.+|+++..|..+..+....|+++.|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999886
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.06 E-value=0.45 Score=39.33 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 013667 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (438)
Q Consensus 74 ~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ra 119 (438)
.+.+..++.+++...|.+..+|...|..+.. .++...+..+|+++
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3444455555555555555555554443332 33444444444443
No 250
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=94.75 E-value=0.034 Score=37.62 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=20.7
Q ss_pred HHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 408 LRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 408 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
|.++|++||.|.++.+..++ +|+|||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V 26 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFV 26 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEE
Confidence 67899999999999887653 588886
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.62 E-value=0.16 Score=49.64 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=59.5
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH---HHHHHHHHHhhccchhHHHHHHHHHHHc
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~l---W~~Y~~~l~~~~~~~~~~~~i~erAl~~ 87 (438)
+|.+...|.++.......|+++.++..|++||..+|++... |.+-+..+. ..+..+.+...|++|+..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 56788899999999999999999999999999999999865 888877665 446778899999999996
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=94.58 E-value=2.1 Score=42.07 Aligned_cols=173 Identities=11% Similarity=0.060 Sum_probs=96.7
Q ss_pred HHhcCCCCH---HHH--HHHHHHHHh----hccchhHHHHHHHHHH---HcCCCCHH-----HHHHHHHHHHH---ccCC
Q 013667 49 AITDFPVSS---DLW--LDYTQYLDK----TLKVGNVVRDVYSRAT---KNCPWVGE-----LWVRSLLSLER---SRAS 108 (438)
Q Consensus 49 al~~~p~~~---~lW--~~Y~~~l~~----~~~~~~~~~~i~erAl---~~~p~~~~-----lW~~y~~~le~---~~~~ 108 (438)
+...-|.+. +.| -.|+.-+.. ...+...+..+|.||+ ..-|.... .|+.....+.. ....
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 333336666 778 556554432 1123455888899999 56666443 23332221111 1222
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 013667 109 EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (438)
Q Consensus 109 ~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~ 188 (438)
..++..+-++|+..+........ .+..+-.+. .+++.....|++|... +|.....|.+.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~--~~g~~~~~~------------~~~~~a~~~f~rA~~L-------~Pn~A~~~~~~ 378 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILA--IMGLITGLS------------GQAKVSHILFEQAKIH-------STDIASLYYYR 378 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHhh------------cchhhHHHHHHHHhhc-------CCccHHHHHHH
Confidence 35567778888887765322211 111111110 1223333455555443 56666788888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccchHH--HHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 189 AHLEQSMGKDMVSARGVWERLLKISGAMLE--AWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~--~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
+.+....| +.+.|+..+++++...|.... +-..++++... ..++++..+|-+-.
T Consensus 379 ~~~~~~~G-~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 379 ALVHFHNE-KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHcC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 88887778 899999999999999887643 33444443322 34566666665543
No 253
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.48 E-value=0.46 Score=40.39 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~ 228 (438)
+|...+.+....| +.+.|...|++++...|.....|.....+..
T Consensus 74 ~~~~lg~~~~~~g-~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 74 ILYNIGLIHTSNG-EHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 5555666666666 6777777777777666665555544444444
No 254
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.37 E-value=0.047 Score=32.72 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhh
Q 013667 45 LYERAITDFPVSSDLWLDYTQYLDKT 70 (438)
Q Consensus 45 ~yERal~~~p~~~~lW~~Y~~~l~~~ 70 (438)
+|++||..+|.++..|..++.++...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 37888888888888888888877644
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.36 E-value=0.44 Score=39.04 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH----HHH
Q 013667 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVS-----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE----LWV 96 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~-----~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~----lW~ 96 (438)
+..=+.-....|++..++..||.....+|.. ..||+.|+.|.. ++.+.+...++|.|+..|.+.. ++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~---~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ---GDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3334444567889999999999999988865 479999998865 3457799999999999887653 333
Q ss_pred HHHHHHHHcc----------C---CHHHHHHHHHHHHhCCcc
Q 013667 97 RSLLSLERSR----------A---SEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 97 ~y~~~le~~~----------~---~~~~~~~i~~ral~~~~~ 125 (438)
.-+..++... . ....+..-|++.+..-+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 3333333211 1 134566777887755443
No 256
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.30 E-value=4.1 Score=37.08 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE 93 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~ 93 (438)
.+-.-+.-....|+.+.|...|+..+...|.++ .+|+.|+.|-. ++.+.+...|+++++..|.+..
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~---~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCcCCCc
Confidence 333344444568999999999999999999875 36777776643 4567899999999999998653
No 257
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.26 E-value=2.2 Score=34.04 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~---~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+.++.++.....+| .++.|..+++.++..+|+ ...++..++......|..++|...+-.++.
T Consensus 39 ~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 39 RALIQLASTLRNLG-RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35555666667778 788888888888888777 556776777777777888888887777765
No 258
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.38 E-value=0.14 Score=49.95 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=42.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhc-CCCCeeEEEEeecCCCCCCcceee
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRVSFF 437 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~f 437 (438)
...+|||||.||--++-.+|..+|+ .||.|..+-|=+|+.-+-++|-|=
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 4456999999999999999999999 699999999999977777887663
No 259
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.37 E-value=0.49 Score=46.28 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=59.7
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~---~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+.....|...+..+...+ +++.|...|+++|..+|++.+ .|....-.....|+++.|...|++|+..
T Consensus 71 dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556678888888888888 899999999999999999875 4888888888999999999999999973
No 260
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.53 E-value=2.5 Score=36.10 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=30.6
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC-------hhhHHHHHHHHHhcCCCCHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-------PGRVQLLYERAITDFPVSSDL 59 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~-------~~~~~~~yERal~~~p~~~~l 59 (438)
+|+.||.....+|. |.+++-.|-..+.-.-...+ ++.++.-|+.||..+|...+.
T Consensus 10 ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 10 ARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 67778888877774 45555556555543322222 345566777777778776543
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.26 E-value=1.4 Score=36.30 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
+....+......| +++.|..+..+++..+|-+-.+|...+......|+...|..+|+++..
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445566666778 899999999999999999999999999999999999999999998865
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.25 E-value=0.44 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
+|...+.+....+ +++.|+..|++++..+|+
T Consensus 3 ~~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLG-NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHCcC
Confidence 4566667777777 788888888888877765
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.21 E-value=3.1 Score=34.13 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 72 KVGNVVRDVYSRATKNCPWVG-----ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 72 ~~~~~~~~i~erAl~~~p~~~-----~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
++.+.+...|+.....+|.+. .||+.|+.+. .++.+.+...+++-+...|.
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCC
Confidence 456778888988888888643 6888887643 46788899999998876665
No 264
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.01 E-value=1.3 Score=40.40 Aligned_cols=61 Identities=26% Similarity=0.323 Sum_probs=43.6
Q ss_pred hhhHhHHHHHhcCCCCC-hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 013667 3 NARAHLEEQISRQDLSD-SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~-~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l 67 (438)
+|...||..+...|.+. ......|..|+- .+.+++..++..|++.|..+|.++.+ .|+.|+
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ay--y~~~~y~~A~~~~e~fi~~~P~~~~~--~~a~Y~ 111 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAY--YKNADLPLAQAAIDRFIRLNPTHPNI--DYVLYM 111 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCcCCCch--HHHHHH
Confidence 56788999999888642 111224555555 56789999999999999999998865 444443
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.93 E-value=0.44 Score=27.95 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVS 56 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~ 56 (438)
.|...+......|+++.++..|+++|..+|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56666666677777888888888887777754
No 266
>PRK15331 chaperone protein SicA; Provisional
Probab=91.52 E-value=4.7 Score=33.95 Aligned_cols=102 Identities=8% Similarity=-0.142 Sum_probs=75.6
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHH
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y 98 (438)
+++.++.--.|+--....|+++.|..+|.-.....|.+++.|+..+..... .+..+.+...|..|...-+.++..-..-
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 455666666677767788999999999999999999999999999876553 4567889999999988655443322221
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 013667 99 LLSLERSRASEEEISTVFEKSLLC 122 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~ 122 (438)
.. +....++.+.++..|+-++..
T Consensus 112 gq-C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQ-CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HH-HHHHhCCHHHHHHHHHHHHhC
Confidence 22 333467888999999998874
No 267
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.48 E-value=0.33 Score=47.52 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEe
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRIL 424 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~ 424 (438)
..-.+.||||+||+.++|+.|...|..||.+ .|..+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP 291 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWP 291 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecC
Confidence 3456799999999999999999999999987 34555
No 268
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=13 Score=36.10 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH----HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHH
Q 013667 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE----AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED 255 (438)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~----~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~ 255 (438)
..+..|..-+.-..+.| ++..|-++|..+|..+|++.+ ++..-+..-.+.|....|..-.+.|+.. . + .
T Consensus 247 k~le~~k~~gN~~fk~G-~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D---~-s 319 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNG-NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--D---S-S 319 (486)
T ss_pred HHHHHHHhhhhhHhhcc-chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--C---H-H
Confidence 34566777777777888 899999999999999988653 5555556667789999999999999872 2 3 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhhhhHH
Q 013667 256 ICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (438)
Q Consensus 256 i~~~~~~fE~~~G~~~~~~~a~~~~~~~l~ 285 (438)
.+..++.=-+.|-.++.++.|++-+.++++
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666667777777777766665554
No 269
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.12 E-value=2.7 Score=35.82 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhh--cc-------chhHHHHHHHHHHHcCCCCHH-HHHHHHHH--HHHcc
Q 013667 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKT--LK-------VGNVVRDVYSRATKNCPWVGE-LWVRSLLS--LERSR 106 (438)
Q Consensus 39 ~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~--~~-------~~~~~~~i~erAl~~~p~~~~-lW~~y~~~--le~~~ 106 (438)
++.++..|+.....+|++.+.+.++.-.|..- .+ -.+.+..-|+.||+.+|.... +|.-=.-+ +-...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45678888999999999999999998777532 11 124577888999999998754 55431111 11122
Q ss_pred CCHHHHHHHHHHHHh
Q 013667 107 ASEEEISTVFEKSLL 121 (438)
Q Consensus 107 ~~~~~~~~i~~ral~ 121 (438)
.+..++...|++|..
T Consensus 87 ~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE 101 (186)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 334456666666553
No 270
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=91.08 E-value=0.58 Score=40.71 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=35.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec-CCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD-KFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~~fv 438 (438)
+.-+|+||++||.++...+|..+|..|-.-....|-.. +...-.+.+|||
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFa 82 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFA 82 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEE
Confidence 44679999999999999999999999865554444332 112224467764
No 271
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.06 E-value=0.49 Score=43.53 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=52.1
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHH
Q 013667 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW 95 (438)
.+.|+.++++.+||.|+...|.++++-+.|..|.+.+ ++.-.+-.+|-+|+..-|...+.-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHH
Confidence 4578999999999999999999999999999999876 455558889999999998765543
No 272
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=8.9 Score=38.25 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=70.7
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHH
Q 013667 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (438)
Q Consensus 33 e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~ 112 (438)
..+.|++..++..|..||..+|.+..++.+-+.-+.. ......+..-.+.++...|.....|..-...+. .....+.+
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k-L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~-~mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK-LGEYPEALKDAKKCIELDPNFIKAYLRKGAALR-AMKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHHHHHHH
Confidence 3456899999999999999999999999887765543 344556777788999988877777777665444 35567888
Q ss_pred HHHHHHHHhCCcc
Q 013667 113 STVFEKSLLCAFS 125 (438)
Q Consensus 113 ~~i~~ral~~~~~ 125 (438)
...|+.++..++.
T Consensus 446 leay~eale~dp~ 458 (539)
T KOG0548|consen 446 LEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHhcCch
Confidence 9999999987765
No 273
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=11 Score=36.31 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=48.6
Q ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Q 013667 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYKRC 243 (438)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g-~~~~ar~i~~ra 243 (438)
..|+....+.+...+.++...-.-++....++ +++.||..|+++++..|++-.+-...+.+-.+.. ..++.+.+|.+.
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333444433334445555566 7777888888887777777777777777665554 344567777777
Q ss_pred Hhc
Q 013667 244 YSK 246 (438)
Q Consensus 244 l~~ 246 (438)
+..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 653
No 274
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=18 Score=35.20 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+...++..-+-+...+| ....|..-.+.+++.++...+..+.-++.-...++++.|+.-|++|++.
T Consensus 284 ~~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLG-RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677777888 7889999999999998877777777777777778899999999999974
No 275
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=90.27 E-value=0.24 Score=46.24 Aligned_cols=49 Identities=27% Similarity=0.288 Sum_probs=40.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeE--------EEEeecCCCCCCcceee
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVSFF 437 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~f 437 (438)
....+|||-+||.+++++++..+|.+||.|.. |.|-+|+.|+++||=|-
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeat 120 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEAT 120 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCcee
Confidence 45569999999999999999999999998853 55667778888887553
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.05 E-value=0.91 Score=26.61 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
+|...+.++...| +++.|.+.|+++++..|+
T Consensus 3 ~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLG-DYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 5666666666777 777777777777776653
No 277
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=24 Score=35.88 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhcCCchh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------ccchHHHHHHHHHHHHhcccHHH
Q 013667 164 FQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAWQSYISMEIELDHINE 235 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-------~~~~~~~W~~y~~~e~~~g~~~~ 235 (438)
+.++..+|......++.. ..+-+..+++-...| ++..|.+++...+.. ....+.+--....+....++.+.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g-n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG-NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 344444444444333332 345556677777777 788888888744422 11222333222233334456666
Q ss_pred HHHHHHHHHhcc---cC-CCChHHHHHHHHHHHHHhCCHHHHH
Q 013667 236 ARSIYKRCYSKR---FT-GTGSEDICHAWLRFEREYGTLEDFD 274 (438)
Q Consensus 236 ar~i~~ral~~~---~~-~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (438)
|..++..|+.-. .+ ...-..+|.....|+..+|+.++-.
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 777777776420 01 1112246677788888888766443
No 278
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=90.01 E-value=0.52 Score=41.20 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=38.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....++|+.|||.+++.+.+..+|.+|+....++++..+ +|.+||
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfv 188 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFV 188 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEE
Confidence 445699999999999999999999999999999998763 356665
No 279
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=5.6 Score=39.62 Aligned_cols=111 Identities=17% Similarity=0.078 Sum_probs=86.0
Q ss_pred hhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~er 83 (438)
|-..|-++|.++|. +...|.+-+....+.|.+..+..--+.+|..+|.....|++=+..+. .++..+.+...|+.
T Consensus 377 Av~~YteAIkr~P~----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~-~mk~ydkAleay~e 451 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPE----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR-AMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHhcCCc----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44577788888875 67778888888888899999999999999999999999999887665 45567789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013667 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (438)
Q Consensus 84 Al~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral 120 (438)
|+..-|.+.++-..|.+.++...+ ...-..++++++
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~~~-~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQRG-DETPEETKRRAM 487 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhc-CCCHHHHHHhhc
Confidence 999999988887777776664222 223345555644
No 280
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=89.62 E-value=0.31 Score=42.37 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEe
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRIL 424 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~ 424 (438)
-.|+||.||..++||++|+.+|+.|.....++|-
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~ 243 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR 243 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe
Confidence 3499999999999999999999999776666654
No 281
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=89.57 E-value=0.32 Score=37.81 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
++.|.|.+++..++.++|+..|+.||.|..|.+..+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G 36 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG 36 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC
Confidence 357899999999999999999999999998887665
No 282
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=88.99 E-value=1.1 Score=43.80 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=38.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeE-EEEeecCCCCCCcceeeC
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~fv 438 (438)
....|-+..||+++|+++|.+||+..-.+.. +-++.+ ..|++.|=|||
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfV 150 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFV 150 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEE
Confidence 3458999999999999999999997754444 557777 57888888886
No 283
>PRK15331 chaperone protein SicA; Provisional
Probab=88.93 E-value=13 Score=31.34 Aligned_cols=86 Identities=7% Similarity=-0.052 Sum_probs=64.4
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHH
Q 013667 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (438)
...| +++.|..+|.-+...++.+.++|+-+.-.....++++.|...|..|... ..++|...+..-.-+ ...|+.+.
T Consensus 48 y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~agqC~-l~l~~~~~ 123 (165)
T PRK15331 48 YNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTGQCQ-LLMRKAAK 123 (165)
T ss_pred HHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHHHHH-HHhCCHHH
Confidence 4566 8999999999999999999999999999999999999999999999973 344443333221111 22477777
Q ss_pred HHHHHHhhhh
Q 013667 273 FDHSVQKVTP 282 (438)
Q Consensus 273 ~~~a~~~~~~ 282 (438)
-+.|+..+..
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7766665544
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.73 E-value=0.97 Score=26.15 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccch
Q 013667 188 WAHLEQSMGKDMVSARGVWERLLKISGAM 216 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (438)
.+.+....| +.+.|+.+|++++..+|++
T Consensus 6 ~a~~~~~~g-~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLG-DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHC-HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHcc-CHHHHHHHHHHHHHHCcCC
Confidence 344445566 7888888888888888763
No 285
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.48 E-value=2.5 Score=30.34 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013667 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 213 ~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
+|+...++..........|+++.|...|++++... ...+....+...+..+-..+.....++.|+.-..+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556777888888889999999999999999741 1122333455666666666555555555554444333
No 286
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=88.45 E-value=21 Score=33.37 Aligned_cols=120 Identities=8% Similarity=-0.043 Sum_probs=81.2
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhccchhHHHHHHH
Q 013667 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS--DLWLDYTQYLDKTLKVGNVVRDVYS 82 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~--~lW~~Y~~~l~~~~~~~~~~~~i~e 82 (438)
...||.+|.--... ++.+.-.-.+......+.++.|...++.+-....++. .+...|+.+... +.....+..+|+
T Consensus 115 ~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g-~e~~~~A~y~f~ 191 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG-GEKYQDAFYIFE 191 (290)
T ss_dssp CCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT-TTCCCHHHHHHH
T ss_pred cCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34688888665432 3455555556666788999999999988776654432 456666665432 234566999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHH
Q 013667 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (438)
Q Consensus 83 rAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~ 128 (438)
.....+|.+..+....+. +....++.+++..+++.|+...+...+
T Consensus 192 El~~~~~~t~~~lng~A~-~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 192 ELSDKFGSTPKLLNGLAV-CHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHHCCS--SHHHHHHHHH-HHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHHhccCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 988888888888877665 566689999999999999987665444
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.20 E-value=0.99 Score=26.51 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~ 55 (438)
+|..-+......|+++.+...|++||..+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666666777777888888888877764
No 288
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.96 E-value=26 Score=33.72 Aligned_cols=215 Identities=14% Similarity=0.052 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV-SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~-~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
.++--+..-...||.+++-.+..++-+.-++ .-..-+.-...+... ++...++.-...++..-|....+-.-..+ ..
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~v~~ll~~~pr~~~vlrLa~r-~y 197 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR-RDYPAARENVDQLLEMTPRHPEVLRLALR-AY 197 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhCcCChHHHHHHHH-HH
Confidence 3444444445668888888888888776322 233444444544433 34455777888888888876654444344 22
Q ss_pred HccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhc-HH-----------H---------HHH
Q 013667 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD-YS-----------L---------IRE 162 (438)
Q Consensus 104 ~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~-~~-----------~---------~r~ 162 (438)
...+....+..+..+.-+.+.-+-.++..+....+..+-+........+.... |. . ..+
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC
Confidence 33566666777766655555444455555543333222222222111111000 00 0 001
Q ss_pred HHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 163 TFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 163 ~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
..+.|..++...++. .|+. +...+.. -..++...-.+..++.++.+|+++.+|.....+..+.+.+.+|...|+
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~--L~~~~~~---l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR--LCRLIPR---LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred ChHHHHHHHHHHHHhccChh--HHHHHhh---cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 224455555554442 3332 3333322 223377777888888888899999999999999999999999999999
Q ss_pred HHHhc
Q 013667 242 RCYSK 246 (438)
Q Consensus 242 ral~~ 246 (438)
.|+..
T Consensus 353 aAl~~ 357 (400)
T COG3071 353 AALKL 357 (400)
T ss_pred HHHhc
Confidence 99974
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.80 E-value=1.6 Score=40.33 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHH
Q 013667 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDI 256 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i 256 (438)
..| +.++|..+|+-++...|+++++.++|.+|....+++-.|-.+|-+||. +.+...+.+
T Consensus 128 ~~G-k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~nseAL 187 (472)
T KOG3824|consen 128 KDG-KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNSEAL 187 (472)
T ss_pred hcc-chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCchHHH
Confidence 445 899999999999999999999999999999888999999999999997 344444433
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.69 E-value=19 Score=31.85 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=21.7
Q ss_pred hHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013667 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (438)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~ 55 (438)
|-.|-++|.-.|. ..+++.-..-+....|+++.+...|.-.+...|.
T Consensus 85 R~DftQaLai~P~----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 85 RNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred hhhhhhhhhcCCC----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 4444444444443 2333333333344445555555555555555544
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.73 E-value=2.4 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
+|...+.+....+ +++.|...|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLG-DYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHCcC
Confidence 4556666666777 788888888888887775
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.65 E-value=6.3 Score=34.29 Aligned_cols=89 Identities=20% Similarity=0.173 Sum_probs=50.7
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc------
Q 013667 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR------ 106 (438)
Q Consensus 33 e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~------ 106 (438)
..++|++..+..-|.+||..||..+.- .+-|-|..+. ..-.-+.-++-||..|...-.||-.|...+++..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nra--aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRA--AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhH--HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 345788999999999999999876651 1122222110 0011223456667777766677777777666521
Q ss_pred CCHHHHHHHHHHHHhCCc
Q 013667 107 ASEEEISTVFEKSLLCAF 124 (438)
Q Consensus 107 ~~~~~~~~i~~ral~~~~ 124 (438)
..++.+..-|.+.+...+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 233444444555554444
No 293
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.39 E-value=16 Score=29.56 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=68.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcC-CCCH---HHHHHHHHHHHHccCCHH
Q 013667 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PWVG---ELWVRSLLSLERSRASEE 110 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~-p~~~---~lW~~y~~~le~~~~~~~ 110 (438)
..|+.+.++..|..+|..+|.....+.+-+.-+.-. ++++.+..-+++|+..- |... ..+..... +.+..++.+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~trtacqa~vQRg~-lyRl~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQTRTACQAFVQRGL-LYRLLGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHhCchH
Confidence 358999999999999999999999999998877644 45677899999999854 4322 34444333 566678889
Q ss_pred HHHHHHHHHHhCCcc
Q 013667 111 EISTVFEKSLLCAFS 125 (438)
Q Consensus 111 ~~~~i~~ral~~~~~ 125 (438)
.++.-|++|-..+.+
T Consensus 133 ~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 133 AARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhHHHHHHhCCH
Confidence 999999999876654
No 294
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=86.29 E-value=0.99 Score=43.19 Aligned_cols=37 Identities=35% Similarity=0.581 Sum_probs=33.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
..+||.+-|||.+-.-+.|.++|+.||.|..|+|..-
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 3569999999999999999999999999999999875
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.05 E-value=1.4 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013667 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~ 55 (438)
.+|..........|+++.+...|++++..+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35777777777888888888888888887763
No 296
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=85.91 E-value=0.83 Score=30.50 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=25.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEe
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRIL 424 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~ 424 (438)
++|-|.+.|.+..+.- ...|..||+|.++.+.
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcC
Confidence 4788999998877654 5588899999998876
No 297
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.60 E-value=9 Score=34.94 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC---CHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW---VGELWV 96 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~---~~~lW~ 96 (438)
.|..-+++. +.|++..|...|..-|...|.+. ..|+-=+.|-. ++.+.+-.+|.++++..|. .++.-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q---g~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ---GDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc---ccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 455555543 56789999999999999999754 68887666543 3456688999999997765 446666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 97 RSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 97 ~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
.....+.. .++.+.++.+|++.+..-+.
T Consensus 220 Klg~~~~~-l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 220 KLGVSLGR-LGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHHCCC
Confidence 66665554 67788999999998876554
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.51 E-value=15 Score=36.50 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=84.8
Q ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccc
Q 013667 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
++..-.+.-.+|+...|.+...|+-.+ |....+..++..+|.+|+..+...+-. +...
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLA---EEeA~Ti~Eae~l~rqAvkAgE~~lg~--s~~~----------------- 240 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLA---EEEASTIVEAEELLRQAVKAGEASLGK--SQFL----------------- 240 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcc---cccccCHHHHHHHHHHHHHHHHHhhch--hhhh-----------------
Confidence 445566778899999999888776644 333566889999999999754321100 0000
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhc
Q 013667 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIEL 230 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~~W~~y~~~e~~~ 230 (438)
.......+.+... .......+-...+....++| ...+|.+.|..+++.+|. ...+-...+......
T Consensus 241 ---------~~~g~~~e~~~~R--dt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 241 ---------QHHGHFWEAWHRR--DTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ---------hcccchhhhhhcc--ccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence 0000000100000 00111112222455557788 799999999999988664 445777778888888
Q ss_pred ccHHHHHHHHHHHH
Q 013667 231 DHINEARSIYKRCY 244 (438)
Q Consensus 231 g~~~~ar~i~~ral 244 (438)
+.+..+..++.+--
T Consensus 309 q~Yad~q~lL~kYd 322 (539)
T PF04184_consen 309 QAYADVQALLAKYD 322 (539)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999988853
No 299
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.50 E-value=29 Score=31.74 Aligned_cols=60 Identities=7% Similarity=-0.013 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 013667 59 LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (438)
Q Consensus 59 lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~r 118 (438)
.-..+..|+.....-.+.+.++++......-.+..+|....-......++++++..+.++
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~ 133 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL 133 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc
Confidence 344555555433222233556666666655555567766554444456777777777776
No 300
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=85.49 E-value=6.7 Score=34.49 Aligned_cols=55 Identities=25% Similarity=0.182 Sum_probs=37.8
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD 58 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~ 58 (438)
.|...|+..+...|.+. -..+++...+......|+...+...|++-+..+|.++.
T Consensus 23 ~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 23 EAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 46778888888888642 22334444555556789999999999999999999874
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.71 E-value=1.6 Score=25.13 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=12.1
Q ss_pred hcCChhhHHHHHHHHHhcCCC
Q 013667 35 SSGDPGRVQLLYERAITDFPV 55 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~ 55 (438)
..|+.+.++.+|++.+..+|.
T Consensus 12 ~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHCHHHHHHHHHHHHHHHSTT
T ss_pred HccCHHHHHHHHHHHHHHCcC
Confidence 345556666666666665554
No 302
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=84.03 E-value=2.2 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhc
Q 013667 45 LYERAITDFPVSSDLWLDYTQYLDKTL 71 (438)
Q Consensus 45 ~yERal~~~p~~~~lW~~Y~~~l~~~~ 71 (438)
.|.+||..+|.+...|+-|+++|..++
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~g 30 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHG 30 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcC
Confidence 456777777777777777777777554
No 303
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.66 E-value=9.5 Score=30.81 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH---HHHhCCHHHHH
Q 013667 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF---EREYGTLEDFD 274 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~f---E~~~G~~~~~~ 274 (438)
+++.|.+.|.+++...|.....+..-++-.+.+|+.+.|..=+++|+. +..+....-+++|++- -+..|+.+..+
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 788888888888888888888888888888888888888888888887 3455555666666653 33446655443
No 304
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=16 Score=35.25 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
...+.+-...+.+.+..|+..-.++|...|.|+..-.+-..-+.. .++.+.|+..|++|+..-|....+-..++....+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 344444445566778888888899999999998877777776653 4567779999999999999888888887775554
Q ss_pred ccCCHHHHHHHHHHHHh
Q 013667 105 SRASEEEISTVFEKSLL 121 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~ 121 (438)
.....+.-+.+|.+++.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 43444455677777664
No 305
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=82.77 E-value=0.59 Score=48.87 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=37.2
Q ss_pred CCCCCCCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 383 GRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 383 ~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.+.+......|||+|||+..+++.+|+..|..+|.|.+|.|-+-
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP 407 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP 407 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC
Confidence 33444566789999999999999999999999999999887654
No 306
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.65 E-value=1.1 Score=39.95 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=35.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCccee
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSF 436 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~ 436 (438)
..|+|.||+.-++.+.+.+-|+.||+|...-++.| ..|++-|=|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg 75 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREG 75 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccc
Confidence 58999999999999999999999999987766666 455544433
No 307
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=82.59 E-value=2.7 Score=40.08 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=32.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
..-|.++|||.+++|.++-.++.+||.|..+.+...
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG 63 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG 63 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeecc
Confidence 347999999999999999999999999998876654
No 308
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=82.24 E-value=21 Score=33.90 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 196 GKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~~~~---~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|.-.+.++.+++.+++.-|+. +.+|+..+.++...|.++++..||+.|+.
T Consensus 116 Gcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ 168 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAIL 168 (353)
T ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 445678888999999887764 46999999999999999999999999997
No 309
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=82.15 E-value=2.6 Score=35.68 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=34.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.....|.|+.||++.+.++|+......|.|.-..+.+|
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD 150 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD 150 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc
Confidence 55679999999999999999999999999988877776
No 310
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=81.87 E-value=19 Score=39.47 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCH
Q 013667 198 DMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~--~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~ 270 (438)
....++.+|..+... -.....++..|.......+.+.+|..+|..++++. ....+.+-+.+..|....|--
T Consensus 93 ~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~--aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNK--AEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhhh
Confidence 467888899888876 33444577888888888888999999999999853 334678889999998887754
No 311
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.70 E-value=18 Score=33.03 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=24.7
Q ss_pred HcCCCHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 194 SMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~---~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
..| +++.|-.+|..+++.+|++ ++..+.........|+.+.|+.+|+..+.
T Consensus 190 ~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 190 AQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred hcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344 4555555555555553332 23444444444444555555555555554
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.16 E-value=7.4 Score=33.44 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~---~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
-..+...++++...| |.+.|.+.|.++...+. ...++|+..+..-..+|++..+...+.++-.
T Consensus 36 r~~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356777888889999 99999999999888743 3457999999999999999999999888876
No 313
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=80.71 E-value=17 Score=34.49 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHH
Q 013667 73 VGNVVRDVYSRATKNCPWV---GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE 129 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~---~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~ 129 (438)
..+.+..++...|.++|.. ...|+-.++ ++...++++.+..||+.|+..+..-+++
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Ar-l~~~~~~~e~vi~iyEeAi~agAqPieE 176 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLAR-LEPRTGPIEDVIAIYEEAILAGAQPIEE 176 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHcCCChHHH
Confidence 4567999999999999974 468999998 4445788899999999999877654333
No 314
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=80.62 E-value=3.7 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=22.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
.||--..|.+....||.++|++||.| .|..+.|
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d 42 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND 42 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC
Confidence 45555599999999999999999997 5666655
No 315
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=79.79 E-value=4.4 Score=25.36 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=23.9
Q ss_pred HhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhH
Q 013667 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRV 42 (438)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~ 42 (438)
..|..+|...|. +-..|..|++|...+|++.++
T Consensus 3 ~all~AI~~~P~----ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPD----DDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCC----CcchHHHHHHHHHHcCCHHHH
Confidence 456777777775 445688888888888888654
No 316
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=77.34 E-value=4.1 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 013667 26 YMIYLKYEQSSGDPGRVQLLYERAIT 51 (438)
Q Consensus 26 w~~Y~~~e~~~g~~~~~~~~yERal~ 51 (438)
|...+......|++++++.+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677777888999999999999664
No 317
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.59 E-value=5.6 Score=23.81 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 220 WQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|.....+....|++++|..+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888999999999999664
No 318
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=62 Score=29.66 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=21.5
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013667 61 LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 61 ~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
+.|..-+.....-..++..+-+-+|+..|....+|.-...
T Consensus 46 m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~ 85 (318)
T KOG0530|consen 46 MDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRV 85 (318)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4454444433322344666666666666666666655443
No 319
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.35 E-value=4.9 Score=42.00 Aligned_cols=51 Identities=25% Similarity=0.517 Sum_probs=41.2
Q ss_pred cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013667 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (438)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le 103 (438)
.+|.++.+|..|+..+..-+. .+....++-+|+..|||...+...++..+-
T Consensus 831 ~l~~~~~~WR~yl~~lskl~~-~~~~~~~~tkA~~sCpW~K~l~md~ie~l~ 881 (913)
T KOG1972|consen 831 ELPDENSKWRDYLEALSKLLN-KERSKAASTKALDSCPWAKWLEMDVIEDLP 881 (913)
T ss_pred cCCcchhHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCchHHHHHHHHHHhcc
Confidence 368888999999999886554 677888999999999998888888776443
No 320
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=19 Score=32.39 Aligned_cols=81 Identities=19% Similarity=0.055 Sum_probs=58.7
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 013667 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (438)
Q Consensus 38 ~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ 117 (438)
.+..++..|-|||..+|+....|.+-+.-... .+..+.+..-..||+...|++..-....-.++-. ...+..+...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHHHHH
Confidence 35678889999999999999999987754332 4556778888899999999876554443333332 345667777788
Q ss_pred HHH
Q 013667 118 KSL 120 (438)
Q Consensus 118 ral 120 (438)
||.
T Consensus 103 ra~ 105 (284)
T KOG4642|consen 103 RAY 105 (284)
T ss_pred HHH
Confidence 875
No 321
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=74.24 E-value=88 Score=30.31 Aligned_cols=128 Identities=17% Similarity=0.071 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHH
Q 013667 92 GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYL 171 (438)
Q Consensus 92 ~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l 171 (438)
+.|=..|+..+.. .+..+++..+.+.++....+. -+ ...++.++ . .|...+....++.+..
T Consensus 263 p~l~~~~a~~li~-l~~~~~A~~~i~~~Lk~~~D~---~L---~~~~~~l~----~-------~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 263 PELVVAYAERLIR-LGDHDEAQEIIEDALKRQWDP---RL---CRLIPRLR----P-------GDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred hhHHHHHHHHHHH-cCChHHHHHHHHHHHHhccCh---hH---HHHHhhcC----C-------CCchHHHHHHHHHHHh-
Confidence 3566666665554 556677777777777654431 11 11111111 1 1222222333333332
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
++....++....++..+.+ .+.+|...|+.+++.-|+... |...++.....|+...|-.+++.++..
T Consensus 324 ------h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 ------HPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ------CCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2333358999999998888 899999999999988766443 555666667889999999999999864
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.84 E-value=6.6 Score=21.33 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013667 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (438)
Q Consensus 25 ~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~ 55 (438)
.|...+......|+++.+...|++++...|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3555555556667777777777777766553
No 323
>PRK04841 transcriptional regulator MalT; Provisional
Probab=73.61 E-value=1.5e+02 Score=32.65 Aligned_cols=116 Identities=13% Similarity=0.009 Sum_probs=58.2
Q ss_pred hhHhHHHHHhcCCCCChH-hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC----CHHHHH--HHHHHHHhhccchhH
Q 013667 4 ARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV----SSDLWL--DYTQYLDKTLKVGNV 76 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~-~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~----~~~lW~--~Y~~~l~~~~~~~~~ 76 (438)
++..++.++...+..+.. ....+..........|+++.+..+|++++..... ....|. ..+..+. ..++.+.
T Consensus 471 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~ 549 (903)
T PRK04841 471 AERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQA 549 (903)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHH
Confidence 455566666543321110 1112333333345678888888888888864321 111221 1122222 2355677
Q ss_pred HHHHHHHHHHcCCCC--------HHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013667 77 VRDVYSRATKNCPWV--------GELWVRSLLSLERSRASEEEISTVFEKSLL 121 (438)
Q Consensus 77 ~~~i~erAl~~~p~~--------~~lW~~y~~~le~~~~~~~~~~~i~~ral~ 121 (438)
+...+++++..+... ..++..... +....++.+++...+.+++.
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ-LLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHH-HHHHhcCHHHHHHHHHHhHH
Confidence 788888887753211 112222222 22234777888888888775
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.23 E-value=16 Score=31.28 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhHH
Q 013667 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (438)
Q Consensus 218 ~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l~ 285 (438)
..|...+++..+.|+.+.|.+.|.++......+...-+++..+++..-.+|+...+..-+.++...+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 36778888999999999999999998874322222335566777777778998888777766655443
No 325
>PRK04841 transcriptional regulator MalT; Provisional
Probab=72.09 E-value=1.6e+02 Score=32.39 Aligned_cols=199 Identities=14% Similarity=0.031 Sum_probs=110.0
Q ss_pred HhcCChhhHHHHHHHHHhcCCC-----CHHHH--HHH-HHHHHhhccchhHHHHHHHHHHHcCCCCHH---HHH-HHHHH
Q 013667 34 QSSGDPGRVQLLYERAITDFPV-----SSDLW--LDY-TQYLDKTLKVGNVVRDVYSRATKNCPWVGE---LWV-RSLLS 101 (438)
Q Consensus 34 ~~~g~~~~~~~~yERal~~~p~-----~~~lW--~~Y-~~~l~~~~~~~~~~~~i~erAl~~~p~~~~---lW~-~y~~~ 101 (438)
...|+++.+..+++++....+. .+.+. ... .-++....++.+.+...+++|+...|.... .+. ..+-.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 4567888888888887664332 11211 111 112222345667788999999886554221 111 11112
Q ss_pred HHHccCCHHHHHHHHHHHHhCCcc--cHHH--HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013667 102 LERSRASEEEISTVFEKSLLCAFS--TFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 102 le~~~~~~~~~~~i~~ral~~~~~--~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
.....++.+.+...+++++..... .... +....+..+.+ . ..++......+.+++.........
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~---~---------~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF---A---------QGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH---H---------CCCHHHHHHHHHHHHHHHHHhccc
Confidence 233467888899999988853211 1110 11111111111 1 145666667777777765442111
Q ss_pred -CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---c--hHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 178 -TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---A--MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 178 -~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~---~--~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
......++...+.+....| +++.|+..+..++.... . ....+..........|+++.|...+.+++.
T Consensus 568 ~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred cccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111223344566667777 99999999999987621 1 123344455566678999999999998865
No 326
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=69.31 E-value=1.5 Score=38.13 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=43.0
Q ss_pred CCCceEEEeC----CCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSN----INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~n----l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
....+++.|| |...++++.+...|+.-|++..+++.++ ..|+++-++|+
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~ 130 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFV 130 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccch
Confidence 3456899999 9999999999999999999999999998 46888888875
No 327
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.00 E-value=1.4e+02 Score=30.59 Aligned_cols=65 Identities=20% Similarity=0.123 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------cch----HH-----HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS------GAM----LE-----AWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~------~~~----~~-----~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
.+++.-.-|-.+...| ++..|.++++++++.+ .+. .+ |-...+=.....|+...|..||...+.
T Consensus 174 syel~yN~Ac~~i~~g-ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 174 SYELLYNTACILIENG-KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred hHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4444444455566677 7889999998886542 111 11 111222223446888899999988887
Q ss_pred c
Q 013667 246 K 246 (438)
Q Consensus 246 ~ 246 (438)
.
T Consensus 253 ~ 253 (652)
T KOG2376|consen 253 R 253 (652)
T ss_pred h
Confidence 5
No 328
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=68.33 E-value=1.3e+02 Score=30.46 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHH-HHHHHHHcCCCHHHHHHHHHHHHHhccc--hHH--HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 013667 184 LYAY-WAHLEQSMGKDMVSARGVWERLLKISGA--MLE--AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (438)
Q Consensus 184 l~~~-~a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~--~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~ 258 (438)
+|+. -++++...| +++.|.+.|++++..... +.. ++-+.+-.....++++.|-..|.+.+. .+.|+..++.
T Consensus 268 lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y~ 343 (468)
T PF10300_consen 268 LFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFYA 343 (468)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHHH
Confidence 5554 366666666 788888888877743211 111 111222223345678888888888776 3466655553
No 329
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=68.00 E-value=73 Score=26.82 Aligned_cols=196 Identities=17% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013667 27 MIYLKYEQSSGDPGRVQLLYERAIT--DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (438)
Q Consensus 27 ~~Y~~~e~~~g~~~~~~~~yERal~--~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~ 104 (438)
..........+....+...++.++. ..+.....|.....+.... +....+..++..++...+.....+.........
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 3333334445566666666666665 4555555665555544432 233446666666666554432222222110122
Q ss_pred ccCCHHHHHHHHHHHHhCCcc--cHHH-HHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCch-
Q 013667 105 SRASEEEISTVFEKSLLCAFS--TFEE-YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG- 180 (438)
Q Consensus 105 ~~~~~~~~~~i~~ral~~~~~--~~~~-~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~- 180 (438)
..+..+.+...|.+++...+. .... +...... . ....+.......+.++... .+.
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~a~~~~~~~~~~-------~~~~ 200 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGAL----L----------EALGRYEEALELLEKALKL-------NPDD 200 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH----H----------HHhcCHHHHHHHHHHHHhh-------Cccc
Confidence 245566666666666543221 1100 0000000 0 0001112222222222222 222
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....+..........+ +...+...+..++...|.....+..........|.+..+...+.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 201 DAEALLNLGLLYLKLG-KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred chHHHHHhhHHHHHcc-cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2223444444444445 567777777777777665333332222222255567777777777765
No 330
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.20 E-value=1e+02 Score=28.12 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHH-HHHH
Q 013667 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVR 97 (438)
Q Consensus 24 ~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~-lW~~ 97 (438)
..|-+=+.-+...|+...|...|+.....+|.++ .+=+-|+.|.. ++.+.++...+|.++.+|.+.+ -|..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~---~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN---GEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 4566666667788999999999999999998875 35555555533 4567799999999999998764 4666
Q ss_pred HHHHH
Q 013667 98 SLLSL 102 (438)
Q Consensus 98 y~~~l 102 (438)
||.-+
T Consensus 112 YlkgL 116 (254)
T COG4105 112 YLKGL 116 (254)
T ss_pred HHHHH
Confidence 66533
No 331
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=66.98 E-value=1.2e+02 Score=28.81 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHc------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Q 013667 183 RLYAYWAHLEQSM------GKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (438)
Q Consensus 183 ~l~~~~a~~e~~~------~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~ 229 (438)
+++...+++-... + +.+.+.+.|..+++.+|+....|..|+.+...
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSE-SSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 5666666665555 4 78899999999999999999999888887754
No 332
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.77 E-value=1.3e+02 Score=29.36 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-----------chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCC-
Q 013667 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-----------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS- 108 (438)
Q Consensus 41 ~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~-----------~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~- 108 (438)
.+..+=-..+..||.-..+|.--=..+..... ..+.-..+.+-|++.+|.+..+|....-.+.++..+
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 44455555567788888888633222221110 112244567888899999999999988878876555
Q ss_pred HHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHH
Q 013667 109 EEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYA 186 (438)
Q Consensus 109 ~~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~ 186 (438)
...=.++.+++++.++. ..|+|-.+-... +....+ .-..=+++...++.++.+++..|-
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~-------~~~~~~------------~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQ-------AERSRN------------LEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHH-------Hhcccc------------cchhHHHHHHHHHhccchhhhHHH
Confidence 66667888999987665 345544322211 110000 001112444455555666777787
Q ss_pred HHHHHHHHc-----CC---CHHHHHHHHHHHHH---hccchHHHHHHHHHHHHhcc
Q 013667 187 YWAHLEQSM-----GK---DMVSARGVWERLLK---ISGAMLEAWQSYISMEIELD 231 (438)
Q Consensus 187 ~~a~~e~~~-----~~---~~~~ar~i~e~~l~---~~~~~~~~W~~y~~~e~~~g 231 (438)
+-.-+...+ .| ..+..++-++...+ .+|++...|.+ ..+....|
T Consensus 188 yRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~~~ 242 (421)
T KOG0529|consen 188 YRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLGRG 242 (421)
T ss_pred HHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhccc
Confidence 765554321 11 13334444444443 48888899955 56665554
No 333
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=66.29 E-value=61 Score=25.34 Aligned_cols=84 Identities=14% Similarity=0.293 Sum_probs=55.9
Q ss_pred HcCCCHHHHHHHHHHHHHhccchHHHHHHHH-------HHHHhcccH-------HHHHHHHHHHHhcccCCCChHHHHHH
Q 013667 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYI-------SMEIELDHI-------NEARSIYKRCYSKRFTGTGSEDICHA 259 (438)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~-------~~e~~~g~~-------~~ar~i~~ral~~~~~~~~~~~i~~~ 259 (438)
..| |..+|.+|.+.++..+++....|+-.. .......|. -.+...|.++.. +.++. ...
T Consensus 8 ~rG-nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~--Lsp~~----A~~ 80 (111)
T PF04781_consen 8 ARG-NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE--LSPDS----AHS 80 (111)
T ss_pred Hcc-CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc--cChhH----HHH
Confidence 456 899999999999999888776663211 111122222 346667777775 23222 456
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhhH
Q 013667 260 WLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 260 ~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
.+..-...|...-+++|+.+|...|
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6777778899999999999886655
No 334
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=66.29 E-value=1.5e+02 Score=32.80 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhc---C-C-hhhHHHHHHHHHhc------CCCCHHHHHHHHH-HHHhhccchhHHHHHHHHHHH--c
Q 013667 22 KFQQYMIYLKYEQSS---G-D-PGRVQLLYERAITD------FPVSSDLWLDYTQ-YLDKTLKVGNVVRDVYSRATK--N 87 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~---g-~-~~~~~~~yERal~~------~p~~~~lW~~Y~~-~l~~~~~~~~~~~~i~erAl~--~ 87 (438)
-+..|..|+.|.... | . ......+.||++.. ...++.+-.-|+- ++... ...+..+|...-. .
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~---~~d~~d~f~~m~~kgI 109 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELREE---LQDAEDFFSYLENKGI 109 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHH---HhhHHHHHHHHHhccc
Confidence 356799999998753 3 3 44567788888764 3455553333332 11111 2336677777665 3
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013667 88 CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (438)
Q Consensus 88 ~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~ 123 (438)
++....++..|...+++ .+.+.++..+|+..++..
T Consensus 110 g~~lalfYe~~a~~lE~-k~~~keA~~v~q~Giq~~ 144 (974)
T KOG1166|consen 110 GTTLALFYEAYAKHLER-KEYFKEAKEVFQLGIQNK 144 (974)
T ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 45566788888877776 344889999999998643
No 335
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.99 E-value=89 Score=30.50 Aligned_cols=93 Identities=24% Similarity=0.195 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCC---HHHHHHHHHH
Q 013667 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS---EEEISTVFEK 118 (438)
Q Consensus 43 ~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~-~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~---~~~~~~i~~r 118 (438)
..+-+-||..+|.++..|..-.-.|.+...+ ...-..+.+++++.-|.+..-|.-.=...+....+ ..+=.+.-.+
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~ 174 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTK 174 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHH
Confidence 4566889999999999999999888765543 45678899999998888888886543334443333 3334556677
Q ss_pred HHhCCccc--HHHHHHHHH
Q 013667 119 SLLCAFST--FEEYLDLFL 135 (438)
Q Consensus 119 al~~~~~~--~~~~~~~~~ 135 (438)
++...|++ .|.|-.+.+
T Consensus 175 ~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 175 LINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHhccchhhhHHHHHHHHH
Confidence 77777774 444555443
No 336
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=62.94 E-value=11 Score=37.64 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCCceEEEeCCCCCCCH------HHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATY------EDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+...-|+|.|+|---.. .-|..+|+++|+|..+.++.+. .|.++||.|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~ 110 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFV 110 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEE
Confidence 44558999999865332 2356789999999999999884 5559999885
No 337
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.25 E-value=1.3e+02 Score=28.96 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
...+|+.+..+ ++| |+++|..+|..++....-..++|...+-...-.|.+..|.++-.+|-
T Consensus 58 ~~~lWia~C~f--hLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 58 SLQLWIAHCYF--HLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHHHHH--hhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 45678776644 567 99999999999998754456777766665555677777777766654
No 338
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.01 E-value=73 Score=28.80 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ra 243 (438)
|..|++.+.+++..+|.....|..-|.-..++. +.+.+-.=-.+++...|+.+.-....-.+......++.|...+.+|
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344445555555445555456666665555555 7888888888899889988765545555555667889999999999
Q ss_pred Hh
Q 013667 244 YS 245 (438)
Q Consensus 244 l~ 245 (438)
..
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 54
No 339
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.76 E-value=1.1e+02 Score=26.85 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
++........-|.++.+.. .++.|.+=|.+++...|..-+
T Consensus 164 ~pty~kAl~RRAeayek~e-k~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKME-KYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred CchhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCcchHH
Confidence 4444444445566666665 688888888888888776443
No 340
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=61.10 E-value=11 Score=27.88 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=23.1
Q ss_pred chhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHh
Q 013667 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS 35 (438)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~ 35 (438)
.+.|..||..|.+... ...-|..|+.+|..
T Consensus 26 vkkR~~fEy~L~rr~~----~~~Dfl~YI~yE~~ 55 (83)
T PF08640_consen 26 VKKRRDFEYKLQRRGK----KKSDFLRYIEYEMN 55 (83)
T ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHHH
Confidence 4678999999977664 45578889998864
No 341
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=60.93 E-value=1.1e+02 Score=26.55 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcCCc--hhH
Q 013667 106 RASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD--GLL 182 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~~~~~-~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~~~--~~~ 182 (438)
.+...+++..|++++.-.+. ....++.+-.+.+.. .+. -.|...|+..+..++ ...
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~--------------~~~-------A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI--------------QEF-------AAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh--------------ccH-------HHHHHHHHHHhhcCCccCCC
Confidence 57788999999999987665 233333332221100 122 222233332222111 112
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHH----HHHHHHHHHHhcccCCCChHHHHH
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN----EARSIYKRCYSKRFTGTGSEDICH 258 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~----~ar~i~~ral~~~~~~~~~~~i~~ 258 (438)
+-.+.|++.+...| ....|+..|+-++...|. ..--+.|..|..++|... .++.+++++.... ..-..--.
T Consensus 161 d~~Ll~aR~laa~g-~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~---~H~rkh~r 235 (251)
T COG4700 161 DGHLLFARTLAAQG-KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSR---PHYRKHHR 235 (251)
T ss_pred CchHHHHHHHHhcC-CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc---hhHHHHHH
Confidence 34677888888888 799999999999999887 444557899999998544 4566777776521 11123334
Q ss_pred HHHHHH
Q 013667 259 AWLRFE 264 (438)
Q Consensus 259 ~~~~fE 264 (438)
.|+++-
T Consensus 236 eW~~~A 241 (251)
T COG4700 236 EWIKTA 241 (251)
T ss_pred HHHHHH
Confidence 566653
No 342
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=59.29 E-value=4.7 Score=37.54 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=42.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
+..+++|+|++...+.+.....++...|......+........++|+++|
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~ 135 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSV 135 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceee
Confidence 45679999999999999999999999998888887776678888888875
No 343
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=58.57 E-value=18 Score=34.40 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhcCCCC-eeE--EEEeecCCCCCCcceeeC
Q 013667 391 ECTAFLSNINLKATYEDLRRFFSDVGG-VSS--IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~--~~~~~~~~~~~~~g~~fv 438 (438)
.-.|-..+||++++-++|-.+|..|-. |.- |+++.+ ..|+..|=|||
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFI 329 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFI 329 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhh
Confidence 347999999999999999999998863 333 788887 68999998886
No 344
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=58.22 E-value=17 Score=34.55 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=35.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcC---C-CCeeEEEEeecCCCCCCcceeeC
Q 013667 392 CTAFLSNINLKATYEDLRRFFSD---V-GGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~---~-G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
..|-..+||+++|+.++..+|.+ . |....|-+|+. .+|+..|=|||
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFv 211 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFV 211 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEE
Confidence 37888899999999999999963 2 24445656665 57888888876
No 345
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=56.61 E-value=2.3e+02 Score=28.66 Aligned_cols=85 Identities=21% Similarity=0.110 Sum_probs=53.2
Q ss_pred cCChhhHHHHHHHHHhcCCC-CH---HHHHHHHHHHH---h---hccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013667 36 SGDPGRVQLLYERAITDFPV-SS---DLWLDYTQYLD---K---TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~-~~---~lW~~Y~~~l~---~---~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~ 105 (438)
.||-+....+..++...... .+ -+-+.|=.++. . ...+.+.+..++++....+|.+ .+|.-+.--+++.
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-ALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 46767777777777663211 11 11222222221 1 1223456888999999999964 6666666557777
Q ss_pred cCCHHHHHHHHHHHHh
Q 013667 106 RASEEEISTVFEKSLL 121 (438)
Q Consensus 106 ~~~~~~~~~i~~ral~ 121 (438)
.++.+.+.+.|++|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 280 KGNLEEAIESFERAIE 295 (468)
T ss_pred hcCHHHHHHHHHHhcc
Confidence 8888999999998884
No 346
>PRK10941 hypothetical protein; Provisional
Probab=55.47 E-value=52 Score=30.38 Aligned_cols=54 Identities=15% Similarity=-0.028 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC
Q 013667 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (438)
Q Consensus 37 g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~ 91 (438)
++.+++..+-|+.|...|.++.-|.+-.-... +.+....+..=++..|..||..
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCc
Confidence 45555555555555555555555555443222 3333444555555555555543
No 347
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=54.46 E-value=8.3 Score=39.35 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEE
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 423 (438)
...+|||||+...+..+-++.+...||-|.++..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr 72 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR 72 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhh
Confidence 3459999999999999999999999999987743
No 348
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=52.72 E-value=20 Score=34.43 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=33.0
Q ss_pred CceEEEeCCCCC-CCHHHHHHHhcCCCCeeEEEEeecCC
Q 013667 391 ECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKF 428 (438)
Q Consensus 391 ~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~ 428 (438)
.+.|-|+||-.. +|.+.|--+|.-||.|.+|.|...+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk 335 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK 335 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC
Confidence 568889988655 79999999999999999999998754
No 349
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=52.71 E-value=84 Score=29.17 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
...+..+...+ +.+.+.+.++..+..+|-+-.+|...+......|+...|...|++.-.
T Consensus 157 ~~lae~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444444555 788999999999999999889999999999999999999999888765
No 350
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=52.63 E-value=2e+02 Score=26.78 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=35.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 013667 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (438)
Q Consensus 29 Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl 85 (438)
+++.....|..+.+...+++.+...|.+..+|..-+......+ ....++..|++.=
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l~ 214 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-RQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-CchHHHHHHHHHH
Confidence 3444444566777777777777778888888877777666443 3344555565543
No 351
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=52.36 E-value=16 Score=26.87 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=19.0
Q ss_pred ceEEEeCCCCCCCHH----HHHHHhcCCC-CeeEE
Q 013667 392 CTAFLSNINLKATYE----DLRRFFSDVG-GVSSI 421 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~----~l~~~f~~~G-~i~~~ 421 (438)
..|+|.|||.+.+.. .|++++..|| .|.+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 379999999998875 4667788887 45444
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=51.99 E-value=3.4e+02 Score=29.41 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------cchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------------------GAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---------------------~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
.+|..|+++....| +++.|..+|..+-..+ ..+.....-.+....+.|++..|...|-
T Consensus 913 ~L~~WWgqYlES~G-emdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVG-EMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 48999999988999 8999999999887642 1112234455666777888888888887
Q ss_pred HHH
Q 013667 242 RCY 244 (438)
Q Consensus 242 ral 244 (438)
||-
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 765
No 353
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.75 E-value=11 Score=35.72 Aligned_cols=87 Identities=17% Similarity=0.045 Sum_probs=67.0
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHccCCHHHH
Q 013667 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--ELWVRSLLSLERSRASEEEI 112 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~--~lW~~y~~~le~~~~~~~~~ 112 (438)
..|.++.++..|-+||..+|.+..+...-...+.. .+-+..+..=|.+|+...|.+. .-|..|+..+ .++.+++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl---lg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL---LGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHH---hhchHHH
Confidence 35789999999999999999998888777765543 3344567788999999988765 4788876544 4677888
Q ss_pred HHHHHHHHhCCcc
Q 013667 113 STVFEKSLLCAFS 125 (438)
Q Consensus 113 ~~i~~ral~~~~~ 125 (438)
...|+.+...++.
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 8888888876654
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.97 E-value=64 Score=30.72 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=51.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 013667 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~ 114 (438)
+.|.++.++..|-+++...|.++-+..+-+.-.... +....+..-++.||...-.....|...+. .....+...++..
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~-AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ-KSFAQAEEDCEAAIALDKLYVKAYSRRMQ-ARESLGNNMEAKK 186 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHHHHHH-HHHHHhhHHHHHH
Confidence 467899999999999999998887666554322211 12223333344444432222233333333 1223456677888
Q ss_pred HHHHHHhCCcc
Q 013667 115 VFEKSLLCAFS 125 (438)
Q Consensus 115 i~~ral~~~~~ 125 (438)
-++++|...+.
T Consensus 187 D~E~vL~LEP~ 197 (536)
T KOG4648|consen 187 DCETVLALEPK 197 (536)
T ss_pred hHHHHHhhCcc
Confidence 88888876554
No 355
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.65 E-value=2.2e+02 Score=25.83 Aligned_cols=119 Identities=8% Similarity=0.029 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHhc
Q 013667 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ-SMGKDMVSARGVWERLLKISGA------MLEAWQSYISMEIEL 230 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~-~~~~~~~~ar~i~e~~l~~~~~------~~~~W~~y~~~e~~~ 230 (438)
......++++++++..+ +....-...+...++++. .+. ++++|...|+.+-..+.. .....+.-+++-...
T Consensus 90 ~eAv~cL~~aieIyt~~-Grf~~aAk~~~~iaEiyEsdl~-d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDM-GRFTMAAKHHIEIAEIYESDLQ-DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHhhhhhHHHHHhhhHH-HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 34445566666665432 111111123444566544 345 899999999999987422 224777888888888
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHHHHH---HH--HHHHHHh-CCHHHHHHHHHhh
Q 013667 231 DHINEARSIYKRCYSKRFTGTGSEDICH---AW--LRFEREY-GTLEDFDHSVQKV 280 (438)
Q Consensus 231 g~~~~ar~i~~ral~~~~~~~~~~~i~~---~~--~~fE~~~-G~~~~~~~a~~~~ 280 (438)
+++..|..||+...... .+.+-.-|. .+ .-+|... +++-....|++++
T Consensus 168 eqY~~Ai~iyeqva~~s--~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSS--LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred HHHHHHHHHHHHHHHHh--ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 99999999999888643 233322221 11 1234434 5655666666554
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.53 E-value=1e+02 Score=22.47 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
....|..+|.++|+..++..+-|....-+-..+.+.-+.|..++-|+.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999777777776665555556666666777766665
No 357
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.49 E-value=31 Score=30.87 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=47.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCC
Q 013667 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (438)
Q Consensus 33 e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~ 91 (438)
..+.|+.+.+..+|.+|+..-|.+..-|.+...|.++.+ ..+.+-..|+..++.-|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCccc
Confidence 345678888899999999999999999999999887654 5566788888888887754
No 358
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=45.29 E-value=14 Score=32.62 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=29.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEE
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSI 421 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~ 421 (438)
....+.++|-|++..+.+.+|...|.++|.+...
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~ 129 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV 129 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchh
Confidence 3556789999999999999999999999998443
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.86 E-value=61 Score=30.18 Aligned_cols=35 Identities=17% Similarity=-0.042 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC
Q 013667 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA 107 (438)
Q Consensus 73 ~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~ 107 (438)
.+..+.++.+|++...|-+...|..++..+-..+.
T Consensus 294 ~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 294 KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 34556777777777777777777776665554333
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.81 E-value=80 Score=20.96 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.9
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHH
Q 013667 193 QSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
.+++ +++.|+...+.+|+..|++..
T Consensus 12 ykl~-~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 12 YKLG-EYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHTT--HHHHHHHHHHHHHHTTS-HH
T ss_pred HHhh-hHHHHHHHHHHHHhhCCCcHH
Confidence 4566 888888888888888887654
No 361
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.89 E-value=2.3e+02 Score=26.21 Aligned_cols=121 Identities=10% Similarity=-0.003 Sum_probs=80.0
Q ss_pred hhHhHHHHHhcCCCCChHh-H-HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHH
Q 013667 4 ARAHLEEQISRQDLSDSEK-F-QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (438)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~-~-~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~ 81 (438)
.+..+|..|+.....|.+. + +.=..|+.+..-.+....+.-+||..-..+|..+.+-..-+.... ..++++.+..++
T Consensus 152 r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL 230 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHH
Confidence 4567788887654333221 1 223334444444456778888999988877777776666555433 446788899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcc
Q 013667 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (438)
Q Consensus 82 erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~ 125 (438)
+.|+..-+..++.-.+.+......+.+.+...+...+.....+.
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 99999999888888887765555566655566666665554444
No 362
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=42.72 E-value=43 Score=31.23 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013667 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (438)
Q Consensus 44 ~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~ 122 (438)
..|++-+..++.+..- .=|..|.. ++++ ++.+|++.|-.--....+|..|+...+....-.+.-..+..||++.
T Consensus 165 ~~fe~W~s~f~lDeK~--eEI~~LL~--gnpd-ir~ly~~lVP~~VshetFW~RYFy~v~kleq~e~~r~~l~~rai~~ 238 (331)
T KOG2690|consen 165 EDFELWLSPFSLDEKT--EEISELLE--GNPD-IRKLYEDLVPSEVSHETFWHRYFYKVEKLEQEEAKRKELLSRAISS 238 (331)
T ss_pred HHHHHHhhccCcccch--HHHHHHHh--cCcc-HHHHHHHhCcccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 5666666655544321 11112221 2223 7778877665444455788888766555333333345677788854
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.38 E-value=41 Score=30.15 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
...+ |.+.+-++|++++..-|....-|.....+..+.|+++.|..-|+..+..
T Consensus 6 ~~~~-D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESG-DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccC-ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3445 8899999999999999999999999999999999999999999998863
No 364
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=42.15 E-value=2.8e+02 Score=25.57 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 013667 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER-SRASEEEISTVFEKS 119 (438)
Q Consensus 41 ~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~~le~-~~~~~~~~~~i~~ra 119 (438)
++..+.+-+-...|+.+.+..-+++++.. ..+.+.+..++.++|++++++..-+...+..+.. .......+...+...
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYL 183 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 34445445555678888888888888876 3455678899999999988665555554443321 122334455555555
Q ss_pred H
Q 013667 120 L 120 (438)
Q Consensus 120 l 120 (438)
+
T Consensus 184 l 184 (278)
T PF08631_consen 184 L 184 (278)
T ss_pred H
Confidence 5
No 365
>PF12854 PPR_1: PPR repeat
Probab=42.00 E-value=58 Score=19.07 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWER 208 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~ 208 (438)
.|...+.-..+.| +++.|.++|++
T Consensus 9 ty~~lI~~~Ck~G-~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAG-RVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHh
Confidence 4555555556666 67777777765
No 366
>PF13041 PPR_2: PPR repeat family
Probab=40.83 E-value=77 Score=20.18 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 219 ~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.|...+....+.|+++.|..+|+.....
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3445555555555555555555555543
No 367
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=40.41 E-value=19 Score=31.92 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=28.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEE
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSI 421 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~ 421 (438)
.+..++|+-|+|...|++.|..+.+.+|.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445699999999999999999999999966554
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.94 E-value=62 Score=20.55 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 013667 188 WAHLEQSMGKDMVSARGVWERLLK 211 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~ 211 (438)
.|+.+...| +.+.||++++.++.
T Consensus 5 LA~ayie~G-d~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMG-DLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHH
Confidence 344445566 67777777777773
No 369
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=39.78 E-value=69 Score=17.87 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 220 WQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|...+....+.|+++.|..+|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444455555555555555443
No 370
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=39.62 E-value=42 Score=34.77 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCc-eEEEeCCCCCCCHHHHHHHhcCCCCee-EEEEeecCCCCCCccee
Q 013667 390 DEC-TAFLSNINLKATYEDLRRFFSDVGGVS-SIRILHDKFTGKSRVSF 436 (438)
Q Consensus 390 ~~~-~v~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~ 436 (438)
.++ -|-+.|+|++++-+||-+||..|-.+- +|++-++ ..|...|=|
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~ 912 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGEC 912 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccce
Confidence 344 678899999999999999999997653 5666665 667776644
No 371
>COG4499 Predicted membrane protein [Function unknown]
Probab=39.43 E-value=3.7e+02 Score=26.14 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh---CCH--HHHH
Q 013667 201 SARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY---GTL--EDFD 274 (438)
Q Consensus 201 ~ar~i~e~~l~~-~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~---G~~--~~~~ 274 (438)
+-..|.+.+.-. +++....|+.+. .|++..|..|=+. .+.++.++-+++..-++. |++ +...
T Consensus 301 kkeNi~NnislkSd~~~llYWi~~G-----RGe~~eAinIAr~-------L~D~d~~~~Al~k~~eevksn~~lsg~~r~ 368 (434)
T COG4499 301 KKENILNNISLKSDDNYLLYWIYSG-----RGEFKEAINIARN-------LDDNDLTLLALTKLYEEVKSNTDLSGDKRQ 368 (434)
T ss_pred HHHHHhhccccccchhHHHHHHHhc-----CccHHHHhhHHHh-------CCcchhHHHHHHHHHHHHhcccCCCchHHH
Confidence 444555555422 555566776553 4666666554221 234555555555544333 333 2344
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 013667 275 HSVQKVTPRLEELRLFRS 292 (438)
Q Consensus 275 ~a~~~~~~~l~~~~~~~~ 292 (438)
+-++.++..++.......
T Consensus 369 e~lk~~n~~lqd~~k~~~ 386 (434)
T COG4499 369 ELLKEYNKKLQDYTKKLG 386 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556777777776655443
No 372
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.35 E-value=28 Score=33.05 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHH--HHHHHHHHHHhcccHHHHHHHHH
Q 013667 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE--AWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 164 f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~--~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
|+.|++.+..++..+++...++..-+.+...+. ....|..=+..++..+|+... -|..|++ +..|+...|+..|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEAAHDLA 206 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHHHHHHH
Confidence 455666665555556666666666677666777 677888888899988888764 5555554 45688999999999
Q ss_pred HHHhc
Q 013667 242 RCYSK 246 (438)
Q Consensus 242 ral~~ 246 (438)
.+++.
T Consensus 207 ~a~kl 211 (377)
T KOG1308|consen 207 LACKL 211 (377)
T ss_pred HHHhc
Confidence 99873
No 373
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=37.18 E-value=90 Score=18.43 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 220 WQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
......+....|+++.|..++++++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345556666778888888888888863
No 374
>PF13041 PPR_2: PPR repeat family
Probab=36.78 E-value=1e+02 Score=19.56 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccch
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAM 216 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~ 216 (438)
.|...+....+.+ +++.|.++|+++.+. .|+.
T Consensus 5 ~yn~li~~~~~~~-~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 5 TYNTLISGYCKAG-KFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred HHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCH
Confidence 4556666667888 899999999999987 4553
No 375
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=36.51 E-value=6e+02 Score=27.74 Aligned_cols=214 Identities=16% Similarity=0.136 Sum_probs=106.9
Q ss_pred hHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 013667 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (438)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~ 86 (438)
..+..+++.|. .....+...|.- .+.|..+.+..+.| ++..-+-+.++=++.+.++....+..+.+..+|+||+.
T Consensus 31 ~~~kllkk~Pn--~~~a~vLkaLsl--~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 31 KLGKLLKKHPN--ALYAKVLKALSL--FRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHCCC--cHHHHHHHHHHH--HHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 33444455553 122334554444 34455555554443 34444445677778888877777677889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCCH----HHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHHHHHhhhcccccchhhc---H
Q 013667 87 NCPWVGELWVRSLLSLERSRASE----EEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLD---Y 157 (438)
Q Consensus 87 ~~p~~~~lW~~y~~~le~~~~~~----~~~~~i~~ral~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~---~ 157 (438)
..|. .++-..++...-+ ..++ ..+.++|.- .|.. -.|..+++...- + ...+...+ +
T Consensus 106 ~~P~-eell~~lFmayvR-~~~yk~qQkaa~~LyK~---~pk~~yyfWsV~Slilqs------~----~~~~~~~~~i~l 170 (932)
T KOG2053|consen 106 KYPS-EELLYHLFMAYVR-EKSYKKQQKAALQLYKN---FPKRAYYFWSVISLILQS------I----FSENELLDPILL 170 (932)
T ss_pred hCCc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh---CCcccchHHHHHHHHHHh------c----cCCcccccchhH
Confidence 9997 5544444432222 2222 223444441 1111 233333333210 0 00000011 1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhccc-hHHHHHHHHHHHHhcccHHH
Q 013667 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL-LKISGA-MLEAWQSYISMEIELDHINE 235 (438)
Q Consensus 158 ~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~-l~~~~~-~~~~W~~y~~~e~~~g~~~~ 235 (438)
......++ ..+... +......++.+++. +...++ ..++|..++..- ....++ +..+-..-.++....+.+.+
T Consensus 171 ~LA~~m~~---~~l~~~-gk~~s~aE~~Lyl~-iL~~~~-k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 171 ALAEKMVQ---KLLEKK-GKIESEAEIILYLL-ILELQG-KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred HHHHHHHH---HHhccC-CccchHHHHHHHHH-HHHhcc-cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 11112221 122211 11233334555444 445567 688888888433 333333 23344455666777788888
Q ss_pred HHHHHHHHHhc
Q 013667 236 ARSIYKRCYSK 246 (438)
Q Consensus 236 ar~i~~ral~~ 246 (438)
.-.+..+.+.+
T Consensus 245 l~~l~~~Ll~k 255 (932)
T KOG2053|consen 245 LFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHHHh
Confidence 88888888875
No 376
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.24 E-value=9.4e+02 Score=29.65 Aligned_cols=72 Identities=10% Similarity=0.206 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcccCCCChHHH
Q 013667 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI----SGAMLEAWQSYISMEIEL-DHINEARSIYKRCYSKRFTGTGSEDI 256 (438)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----~~~~~~~W~~y~~~e~~~-g~~~~ar~i~~ral~~~~~~~~~~~i 256 (438)
+..+-.|.++..+.....+..-.+...++.. +|. --+|+..+-+-... ....++..|+.++... .+.+..+
T Consensus 1889 Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPq-q~lW~~~a~~kS~~p~R~~R~keIL~k~~~~---~~~~~~l 1964 (2382)
T KOG0890|consen 1889 YQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQ-QTLWQSAALSKSNVPSRVERCKEILTKSRRQ---KPDYKKL 1964 (2382)
T ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CccHHHH
Confidence 4456667888776654445555555555543 665 34787777665544 3678899999988873 3445544
Q ss_pred H
Q 013667 257 C 257 (438)
Q Consensus 257 ~ 257 (438)
.
T Consensus 1965 ~ 1965 (2382)
T KOG0890|consen 1965 L 1965 (2382)
T ss_pred H
Confidence 4
No 377
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.86 E-value=48 Score=22.84 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=14.2
Q ss_pred HHHHHHhcCCCCeeEEE
Q 013667 406 EDLRRFFSDVGGVSSIR 422 (438)
Q Consensus 406 ~~l~~~f~~~G~i~~~~ 422 (438)
.+||++|++.|+|.-+-
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 57999999999987554
No 378
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.71 E-value=1.9e+02 Score=20.76 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHHHHh
Q 013667 230 LDHINEARSIYKRCYS 245 (438)
Q Consensus 230 ~g~~~~ar~i~~ral~ 245 (438)
.|+++.|..+|..||.
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4677778888877775
No 379
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=32.45 E-value=86 Score=17.04 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 220 WQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 220 W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
|...++...+.|+++.|..+|++...
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555555556666666666665443
No 380
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=32.14 E-value=57 Score=33.89 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=40.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeE-EEEeecCCCCCCcceeeC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~fv 438 (438)
.-+..|||..||+.+++.++-++|...-.|.+ |.|... -+++-++-|||
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv 481 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFV 481 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhh
Confidence 34568999999999999999999998777776 666666 47888888886
No 381
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=31.94 E-value=5.2e+02 Score=25.61 Aligned_cols=52 Identities=13% Similarity=-0.010 Sum_probs=30.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC
Q 013667 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (438)
Q Consensus 35 ~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~ 90 (438)
+.|+...-+.+|+.||..-..+..+-. -++.+.++.--...-|++|++...+
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLS----AIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLS----AIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHH----HHHHHhcchhhhHhhHHHHHhhhhh
Confidence 457788888999999987554443221 1222333323345667888875443
No 382
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.99 E-value=52 Score=29.87 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCHHHHHHHhcCCCCeeEEEEee
Q 013667 403 ATYEDLRRFFSDVGGVSSIRILH 425 (438)
Q Consensus 403 ~~~~~l~~~f~~~G~i~~~~~~~ 425 (438)
.+++.|+..|+.||.|..|.|+.
T Consensus 173 pse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcc
Confidence 57889999999999999888764
No 383
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.63 E-value=4e+02 Score=28.80 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013667 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 161 r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
...|.-|+.+....-.+.+..-.+++.|+......| |.+.|-.-|-+.+..
T Consensus 347 K~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kg-df~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKG-DFDEATDQYIETIGF 397 (933)
T ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHccc
Confidence 466777887765443344555689999999999999 999999999998865
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.95 E-value=2.2e+02 Score=23.37 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH-hccchHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcccCCCChH
Q 013667 185 YAYWAHLEQSMGKDMVSARGVWERLLK-ISGAMLEAWQSYISMEI-ELDHINEARSIYKRCYSKRFTGTGSE 254 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~-~~~~~~~~W~~y~~~e~-~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (438)
-..|+-+-.....|+.+...+++.+++ .+|..-.-++.|+-+-- +.++|+.++.+.+..+.. .+++++
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Q 106 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQ 106 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHH
Confidence 334444433333367888999999997 46766556667766643 568999999999999973 444443
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=5e+02 Score=24.81 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhhhhhH
Q 013667 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (438)
Q Consensus 218 ~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~a~~~~~~~l 284 (438)
+.|+.-+.|..+.||.++|-..|.+...+.......-+|+-.-+++---|++-+-+.+.++++.+.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4666677777777776666655555554433333344566666666666666666665555544433
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.87 E-value=4.2e+02 Score=23.88 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013667 157 YSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
......+|++|..+....+.. +|-.+.+.+.|+-|+....++.+.|.++-+.++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 355678889998887765544 44457888888888766666898888887777654
No 387
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.03 E-value=81 Score=28.91 Aligned_cols=35 Identities=6% Similarity=0.063 Sum_probs=28.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeec
Q 013667 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (438)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (438)
....|||||++++..-+..++...-.+.++.+|..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 47889999999999999999987766666666654
No 388
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=28.86 E-value=4.5e+02 Score=23.91 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013667 157 YSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (438)
Q Consensus 157 ~~~~r~~f~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (438)
.+....+|+.|.++....+.. +|-.+.+.+.|+-|.....++.+.|.++-..++..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567788887775543333 44456677777777666655788777776666543
No 389
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=28.59 E-value=53 Score=25.21 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=20.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEE
Q 013667 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIR 422 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~ 422 (438)
+.+.|-|-+.|+..+ ..+-+.|++||.|.+..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHF 36 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEee
Confidence 345788889999855 45667789999998764
No 390
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=28.12 E-value=3.5e+02 Score=22.39 Aligned_cols=171 Identities=16% Similarity=0.045 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC---CHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW---VGELWVRS 98 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~---~~~lW~~y 98 (438)
....|..........++...+..++..++...+.+...+..+...+....+..+.+...|++++...|. ....+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 445677777777778888899999999999777664444443331222345667799999999885562 22333332
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHHHHhhhcccccchhhcHHHHHHHHHHHHHHHhhhhcC
Q 013667 99 LLSLERSRASEEEISTVFEKSLLCAFST-FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (438)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~ral~~~~~~-~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~f~~a~~~l~~~~~~ 177 (438)
... ....+....+...+.+++...... ...+..+-..+. . ...+..+...+...+..
T Consensus 174 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 174 GAL-LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-----K----------------LGKYEEALEYYEKALEL 231 (291)
T ss_pred hhH-HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-----H----------------cccHHHHHHHHHHHHhh
Confidence 221 222456777888888887654442 111111111000 0 01223333333333332
Q ss_pred CchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 013667 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (438)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (438)
.+.....+...+......+ ..+.+...+.+++...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 232 DPDNAEALYNLALLLLELG-RYEEALEALEKALELDPD 268 (291)
T ss_pred CcccHHHHhhHHHHHHHcC-CHHHHHHHHHHHHHhCcc
Confidence 3322223444444434444 799999999999999876
No 391
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=27.38 E-value=89 Score=25.21 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Q 013667 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~ 229 (438)
+.+.|.+||+.++..+|+.+.+.+.+|+-...
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 56899999999999999999999998885543
No 392
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.33 E-value=82 Score=23.41 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=27.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceee
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFF 437 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~f 437 (438)
-|||||++..+-+.--..+.+.++.- ++-++.. ... .-||+|
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~-~~n-eqG~~~ 68 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDG-SAVMVWS-DNN-EQGFDF 68 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEc-cCC-CCCEEE
Confidence 69999999998887666666655543 3334443 122 668876
No 393
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.84 E-value=98 Score=27.71 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecC
Q 013667 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK 427 (438)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 427 (438)
.....++++|++..++...+...|..+|.+....+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 455689999999999999999999999999777666553
No 394
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=26.76 E-value=5.8e+02 Score=24.57 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013667 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (438)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~ 226 (438)
..+| .+..|.+=++.+|...|++.++=-.|..+
T Consensus 176 ~~Lg-~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLG-NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHh-hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 3456 67888888888888888776655555443
No 395
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.61 E-value=71 Score=24.33 Aligned_cols=42 Identities=2% Similarity=-0.035 Sum_probs=25.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceee
Q 013667 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFF 437 (438)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~f 437 (438)
-||||+++..+-+.--..+-+.+|. .++-++.. .+. ..||+|
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~-~~~-eqG~~~ 70 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA-TNT-ESGFEF 70 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc-CCC-CCCcEE
Confidence 6999999988877655555555554 23434442 222 338876
No 396
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.22 E-value=5.6e+02 Score=24.17 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCC---CH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhhcccccc
Q 013667 77 VRDVYSRATKNCPW---VG-ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (438)
Q Consensus 77 ~~~i~erAl~~~p~---~~-~lW~~y~~~le~~~~~~~~~~~i~~ral~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (438)
...++++||..|.. +. +|... |....-+.+.|..++.++...++.+=..|...|... ++..
T Consensus 161 ~~~lk~kAL~lLSrReRSe~ELr~K----L~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~------R~~k----- 225 (309)
T PRK14136 161 ARSLKGRALGYLSRREYSRAELARK----LAPYADESDSVEPLLDALEREGWLSDARFAESLVHR------RASR----- 225 (309)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHH----HHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHH------Hhhc-----
Confidence 56789999987743 32 34443 333455678899999998887776544455444311 1100
Q ss_pred hhhcHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc-
Q 013667 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD- 231 (438)
Q Consensus 153 ~~~~~~~~r~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g- 231 (438)
+.-......+.+++ .+..+ |-..+..++ .. .++.|+.++++-+...+.....+...+.|.+..|
T Consensus 226 -kGp~rIrqELrQKG----------Id~eL-IEqALeeie--ED-E~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGF 290 (309)
T PRK14136 226 -VGSARIVSELKRHA----------VGDAL-VESVGAQLR--ET-EFERAQAVWRKKFGALPQTPAERAKQARFLAARGF 290 (309)
T ss_pred -hhHHHHHHHHHHcC----------CCHHH-HHHHHHhcc--Hh-HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCC
Confidence 00000001111111 11100 111111111 12 4667888888877665555566778888988888
Q ss_pred cHHHHHHHHHHHH
Q 013667 232 HINEARSIYKRCY 244 (438)
Q Consensus 232 ~~~~ar~i~~ral 244 (438)
.++.++.+++..-
T Consensus 291 S~D~I~~vLk~~~ 303 (309)
T PRK14136 291 SSATIVKLLKVGD 303 (309)
T ss_pred CHHHHHHHHHhch
Confidence 7888887776543
No 397
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=25.36 E-value=58 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=26.9
Q ss_pred CCceEEEeCCCCCCCHHH----H--HHHhcCCCCeeEEEEe
Q 013667 390 DECTAFLSNINLKATYED----L--RRFFSDVGGVSSIRIL 424 (438)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~----l--~~~f~~~G~i~~~~~~ 424 (438)
+..-|||-+||+.+..++ | .++|.+||.|..|-|-
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvN 153 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVN 153 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEec
Confidence 334799999999987665 3 3789999999887554
No 398
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=25.01 E-value=1.6e+02 Score=28.27 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceEEEeCCCCC-CCHHHHHHHhcCCCCeeEEEEeecCCCCCCcceeeC
Q 013667 382 PGRTKGFTDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVSFFL 438 (438)
Q Consensus 382 ~~~~~~~~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 438 (438)
...+.+..+++-+.|.+|... ++-+.|-.+|..||.|.+|++++.+. |-|.|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamV 330 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMV 330 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEE
No 399
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.85 E-value=1.7e+02 Score=29.24 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 162 ~~f~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
..|+.|+....+++...+.+..++..-+....+.+ ++..|..=..++++..|.....+..=...-+..+.+..|...|+
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeec-hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 34555555555555545555556666554445556 77778888888888888777766666666677778888888888
Q ss_pred HHHh
Q 013667 242 RCYS 245 (438)
Q Consensus 242 ral~ 245 (438)
....
T Consensus 97 ~~~~ 100 (476)
T KOG0376|consen 97 KVKK 100 (476)
T ss_pred Hhhh
Confidence 8776
No 400
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=24.70 E-value=86 Score=33.66 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=31.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhcCCCCeeEEEE
Q 013667 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423 (438)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 423 (438)
....+.+|||+|+..+.-..|...|..||.|..|.+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 345668999999999999999999999999987654
No 401
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=24.68 E-value=4.8e+02 Score=22.86 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=19.4
Q ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013667 77 VRDVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (438)
Q Consensus 77 ~~~i~erAl~-~~p~~~~lW~~y~~~le~~~~~~~~~~~i~~ral~~ 122 (438)
+...|+.|+. .+-....+-...++..- ..+....+..+++.....
T Consensus 108 A~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 108 AVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred hHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhc
Confidence 4555555554 33334444444443211 133444445555554443
No 402
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.23 E-value=1.4e+03 Score=28.25 Aligned_cols=215 Identities=14% Similarity=0.079 Sum_probs=116.4
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHH-cCCC-------
Q 013667 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK-NCPW------- 90 (438)
Q Consensus 19 ~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~-~~p~------- 90 (438)
+..--+.|..++.+..+.|..++|....=.|...- -+.+-+..+++++..+ +...+..+++..+. ++|.
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCccc
Confidence 34455689999999999999999987766665543 5689999999999764 55668999999996 4454
Q ss_pred ---CH--HH----HHHHHHHHHHcc-CCHHHHHHHHHHHHhCCcc------cHHHHHHHHHHHHHHHHHhhhcccccchh
Q 013667 91 ---VG--EL----WVRSLLSLERSR-ASEEEISTVFEKSLLCAFS------TFEEYLDLFLTRIDGLRRRILFSGEVEGV 154 (438)
Q Consensus 91 ---~~--~l----W~~y~~~le~~~-~~~~~~~~i~~ral~~~~~------~~~~~~~~~~~~~~~l~rr~~~~~~~~~~ 154 (438)
+. .+ =..+..+++... .....+...|+.++.+.+. ....|++-|+. ++.... .+..
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~------~~~~~~--~E~~ 1814 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLE------DYKSNK--MEKS 1814 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhh------hhhccc--cccc
Confidence 11 11 122223444322 2345688889998876552 11222222211 111111 1112
Q ss_pred hcHHH---HHHHHHHHHHHHhhhh-cCCchhHHHHHHHHHH--H-HHcCC------CHHHHHHHHHHHHHhccchHHHHH
Q 013667 155 LDYSL---IRETFQRASDYLSEQM-KNTDGLLRLYAYWAHL--E-QSMGK------DMVSARGVWERLLKISGAMLEAWQ 221 (438)
Q Consensus 155 ~~~~~---~r~~f~~a~~~l~~~~-~~~~~~~~l~~~~a~~--e-~~~~~------~~~~ar~i~e~~l~~~~~~~~~W~ 221 (438)
+++.. +..-|.+++.+-...+ .+.|.-..+|+.++-. . ...+. ++...-++.+.+++..|. +.+..
T Consensus 1815 g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~-Y~f~t 1893 (2382)
T KOG0890|consen 1815 GRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT-YQFYT 1893 (2382)
T ss_pred ccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc-hHHHH
Confidence 33322 2223355555433222 2345555677775221 1 11220 233344445555555554 55667
Q ss_pred HHHHHHHhc-ccHHHHHHHHHHHHh
Q 013667 222 SYISMEIEL-DHINEARSIYKRCYS 245 (438)
Q Consensus 222 ~y~~~e~~~-g~~~~ar~i~~ral~ 245 (438)
.|.++..+. ..-+.+-.++...+.
T Consensus 1894 a~sQLlSRicH~~~dV~~vl~~II~ 1918 (2382)
T KOG0890|consen 1894 AYSQLLSRICHPNQDVARVLKHIIA 1918 (2382)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Confidence 888877654 333444444444443
No 403
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=23.92 E-value=3.1e+02 Score=25.59 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013667 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (438)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral 244 (438)
+....++...... +..+--++|+..+.. ...+...|-.|++.-...||..-+|.+...+.
T Consensus 204 vi~~Il~~L~~~~-dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 204 VIISILEILAESR-DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 5555666777777 899999999999877 55667899999999999999999998887765
No 404
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=23.51 E-value=1.8e+02 Score=23.56 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhc-------CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013667 24 QQYMIYLKYEQSS-------GDPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (438)
Q Consensus 24 ~~w~~Y~~~e~~~-------g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~ 68 (438)
..|-+|.+-+... -+.+.+-.||+..+..+|....+-+.+|.-++
T Consensus 70 tk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 70 TKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp --HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3555565544321 13344445555555555555555555554444
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.42 E-value=6.8e+02 Score=24.21 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHc
Q 013667 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (438)
Q Consensus 38 ~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~ 87 (438)
|++.+..+ |..+|+.++.-+.-..+.... ++...+..+.+|||=.
T Consensus 25 Dp~~l~~l----l~~~PyHidtLlqls~v~~~~-gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 25 DPNALINL----LQKNPYHIDTLLQLSEVYRQQ-GDHAQANDLLERALFA 69 (360)
T ss_pred CHHHHHHH----HHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 55555444 356677777666666655543 3556666677776653
No 406
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.42 E-value=2.5e+02 Score=23.01 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhc-CCchhHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhccchHH
Q 013667 164 FQRASDYLSEQMK-NTDGLLRLYAYWAHLE-QSMGKDMVSARGVWERLLKISGAMLE 218 (438)
Q Consensus 164 f~~a~~~l~~~~~-~~~~~~~l~~~~a~~e-~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (438)
.++++.+|...+. ..+..-+-+.+|.-+= ++++ +++.++.+.+.++...|++..
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-eY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-EYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-hHHHHHHHHHHHHhhCCCcHH
Confidence 3556666766664 3333445566665553 5666 899999999999999887653
No 407
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.40 E-value=2.6e+02 Score=20.16 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=13.5
Q ss_pred hcccHHHHHHHHHHHHh
Q 013667 229 ELDHINEARSIYKRCYS 245 (438)
Q Consensus 229 ~~g~~~~ar~i~~ral~ 245 (438)
..|+++.|..+|..||.
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 35788888888888885
No 408
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=23.22 E-value=1.8e+02 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH
Q 013667 43 QLLYERAITDFPVSSDLWLDYT 64 (438)
Q Consensus 43 ~~~yERal~~~p~~~~lW~~Y~ 64 (438)
+.+|++.+-..-....+|.+|.
T Consensus 194 r~ly~~lVP~~VshetFW~RYF 215 (331)
T KOG2690|consen 194 RKLYEDLVPSEVSHETFWHRYF 215 (331)
T ss_pred HHHHHHhCcccccHHHHHHHHH
Confidence 3344444433333344444443
No 409
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.18 E-value=4.8e+02 Score=27.11 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHH
Q 013667 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (438)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ 241 (438)
-+++....+ ..++|-.+|++++..+++ +....|++-..+.|-...|+.+++
T Consensus 48 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 48 KAEFLHDVN-ETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred Hhhhhhhhh-hhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 455555566 688999999999999998 566788888888898888998887
No 410
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.96 E-value=5.3e+02 Score=22.79 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHh--ccch----HHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013667 183 RLYAYWAHLEQSMGKDM-------VSARGVWERLLKI--SGAM----LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (438)
Q Consensus 183 ~l~~~~a~~e~~~~~~~-------~~ar~i~e~~l~~--~~~~----~~~W~~y~~~e~~~g~~~~ar~i~~ral~~ 246 (438)
.+++..|-+....+ +. ..|...|++++.. +|.. ..+-.--..+.++.|+++.|...|.+.+..
T Consensus 119 ~l~LrlAWlyR~~~-~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLG-DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35555555555555 43 4677777777766 3221 223333445777889999999999999984
No 411
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=22.89 E-value=1.4e+02 Score=16.04 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 013667 187 YWAHLEQSMGKDMVSARGVWE 207 (438)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e 207 (438)
..+......| +++.|+.+++
T Consensus 6 ~la~~~~~~G-~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQG-DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcC-CHHHHHHHHh
Confidence 3444555566 6777766654
No 412
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.88 E-value=5.9e+02 Score=23.28 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=55.3
Q ss_pred hhhHhHHHHHhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH-HHHHHHHHHhhc------cch-
Q 013667 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL-WLDYTQYLDKTL------KVG- 74 (438)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~l-W~~Y~~~l~~~~------~~~- 74 (438)
+|-..||....+.|.+ +-..++-...+--..+.++.+.++...+|-+..+|.++++ |..|+.-+..-. .+.
T Consensus 52 ~A~~~fe~l~~~~p~s-~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~ 130 (254)
T COG4105 52 EAIKYFEALDSRHPFS-PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQS 130 (254)
T ss_pred HHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHH
Confidence 3456677777777753 2223333333333467889999999999999999998873 555555443211 111
Q ss_pred --hHHHHHHHHHHHcCCCC
Q 013667 75 --NVVRDVYSRATKNCPWV 91 (438)
Q Consensus 75 --~~~~~i~erAl~~~p~~ 91 (438)
..+..-|+..|..+|+|
T Consensus 131 ~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 131 AARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 22555666777777776
No 413
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=5.8e+02 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=10.9
Q ss_pred cccHHHHHHHHHHHHh
Q 013667 230 LDHINEARSIYKRCYS 245 (438)
Q Consensus 230 ~g~~~~ar~i~~ral~ 245 (438)
.++|+.|-.+|..|+.
T Consensus 23 a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALE 38 (439)
T ss_pred hhchHHHHHHHHHHHH
Confidence 3567777777777764
No 414
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=22.64 E-value=2.8e+02 Score=19.93 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHHHHh
Q 013667 231 DHINEARSIYKRCYS 245 (438)
Q Consensus 231 g~~~~ar~i~~ral~ 245 (438)
|+++.|..+|..|+.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 566666666666664
No 415
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.29 E-value=3.8e+02 Score=25.10 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=58.5
Q ss_pred cCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHHHHH
Q 013667 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (438)
Q Consensus 195 ~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (438)
.+ +...|..+|..++...|.+.++-+-|+......|+.+.|..+|...=.. ...+.... ..+++.|-..-.+..+..
T Consensus 147 ~e-~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~-l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 147 AE-DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHG-LQAQIELLEQAAATPEIQ 223 (304)
T ss_pred cc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHH-HHHHHHHHHHHhcCCCHH
Confidence 44 8999999999999999999999999999999999999999998863221 11111112 456777776666555444
Q ss_pred HHHHh
Q 013667 275 HSVQK 279 (438)
Q Consensus 275 ~a~~~ 279 (438)
....+
T Consensus 224 ~l~~~ 228 (304)
T COG3118 224 DLQRR 228 (304)
T ss_pred HHHHH
Confidence 43333
No 416
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.07 E-value=7.2e+02 Score=23.96 Aligned_cols=88 Identities=8% Similarity=-0.006 Sum_probs=55.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHccCCHHH
Q 013667 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN----CPWVGELWVRSLLSLERSRASEEE 111 (438)
Q Consensus 36 ~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~----~p~~~~lW~~y~~~le~~~~~~~~ 111 (438)
.|+...+...+++.|..+|.+--.|..-=+... .++........+++.+-. .|-+.-+.-+|+.-|+. .+-...
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchh
Confidence 356677888889999999988777654332221 223333344555555543 35455667777765554 566778
Q ss_pred HHHHHHHHHhCCcc
Q 013667 112 ISTVFEKSLLCAFS 125 (438)
Q Consensus 112 ~~~i~~ral~~~~~ 125 (438)
++..-.+|++.+..
T Consensus 194 AEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 194 AEKQADRALQINRF 207 (491)
T ss_pred HHHHHHhhccCCCc
Confidence 88888888877654
No 417
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=21.99 E-value=4.1e+02 Score=21.13 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHhc-c--cHHHHHHHHHHHH
Q 013667 185 YAYWAHLEQSMGK-DMVSARGVWERLLKI-SGAMLEAWQSYISMEIEL-D--HINEARSIYKRCY 244 (438)
Q Consensus 185 ~~~~a~~e~~~~~-~~~~ar~i~e~~l~~-~~~~~~~W~~y~~~e~~~-g--~~~~ar~i~~ral 244 (438)
|...-++....|. +...-|.++..|.+. .-++.+.|+.+++.--.. . +-+.|..+|.+..
T Consensus 44 WK~lK~~L~~~G~~~~~spr~~~r~A~~~glI~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 44 WKTLKDYLEYEGISECNSPRDVFREAFKAGLIDDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP 108 (124)
T ss_dssp HHHHHHHHHHCTSSCCTSHHHHHHHHHHTTSSSHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHcCCCCCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4433333333443 344558999999987 557788999998865332 2 4567888887765
No 418
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.24 E-value=2.1e+02 Score=30.68 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 013667 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK 69 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~ 69 (438)
+...|..|+....+.++.++.-.+|-+|+..||-+-.+-++|++.+-.
T Consensus 835 ~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K~l~md~ie~l~v 882 (913)
T KOG1972|consen 835 ENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAKWLEMDVIEDLPV 882 (913)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHHHHHHHHHHhccc
Confidence 445899999999999899999999999999999888888888887654
No 419
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=6.7e+02 Score=23.25 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 013667 22 KFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (438)
Q Consensus 22 ~~~~w~~Y~~~e~~~g-~~~~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~~~~lW~~y~~ 100 (438)
++..=+.|..-....+ ...||..+-+-+|..+|-+..+|.---..|..-+.+...-..-+.+.+...|....+|...-.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 4555556666554443 467999999999999999999998766666544444455567788888899999999999766
Q ss_pred HHHHccCCHH-HHHHHHHHHHhC
Q 013667 101 SLERSRASEE-EISTVFEKSLLC 122 (438)
Q Consensus 101 ~le~~~~~~~-~~~~i~~ral~~ 122 (438)
.+|... +.. .-..+..+++..
T Consensus 121 ive~l~-d~s~rELef~~~~l~~ 142 (318)
T KOG0530|consen 121 IVELLG-DPSFRELEFTKLMLDD 142 (318)
T ss_pred HHHHhc-CcccchHHHHHHHHhc
Confidence 667644 332 223334455543
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.98 E-value=2.7e+02 Score=23.89 Aligned_cols=54 Identities=17% Similarity=0.069 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHHHcCCC-CHHHHH
Q 013667 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW-VGELWV 96 (438)
Q Consensus 41 ~~~~~yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~i~erAl~~~p~-~~~lW~ 96 (438)
......++.+...| ++.+..+|+..+... ++.+++..+..++...+|. ...-|.
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~-G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALL-GDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34556677777777 788889998877754 5678899999999999993 334554
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.83 E-value=9.2e+02 Score=24.74 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 013667 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (438)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE 264 (438)
+...++.+...+ .+.--.+|+++++.+-+...+-...+..... ++.+.+-..|.+|+-+-++......|-+-|-.+-
T Consensus 102 l~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 102 LLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Q ss_pred HHhC-CHHHHHHHHHhhhhhH
Q 013667 265 REYG-TLEDFDHSVQKVTPRL 284 (438)
Q Consensus 265 ~~~G-~~~~~~~a~~~~~~~l 284 (438)
.-.| +.+.+-..+.++.+.+
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~l 199 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKL 199 (711)
T ss_pred HhccccHHHHHHHHHHHHHhh
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.66 E-value=3.6e+02 Score=23.12 Aligned_cols=44 Identities=25% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013667 201 SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (438)
Q Consensus 201 ~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~ 245 (438)
...+..++.++..|+ ..+...|+......|+.++|+.+..++..
T Consensus 129 ~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555566656664 56677777777777888888888777775
No 423
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.25 E-value=6.6e+02 Score=23.03 Aligned_cols=68 Identities=12% Similarity=0.297 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------cc-----CCCChHHHHHHHHHHHHH
Q 013667 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK------RF-----TGTGSEDICHAWLRFERE 266 (438)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~~W~~y~~~e~~~g~~~~ar~i~~ral~~------~~-----~~~~~~~i~~~~~~fE~~ 266 (438)
+++.|..+|..++...+.-...|. +|...++....-|....-.+.. .+ ..-|| .+++.+++|++.
T Consensus 175 d~~~ai~~w~ll~~~~~pll~~w~---~FL~~~~~~~~~KDtW~~~l~Fs~~i~~dlSnYDeegAWP-~liDeFVe~~r~ 250 (260)
T KOG3077|consen 175 DLETAISLWKLLFGQTPPLLDQWI---QFLKDSPNRAISKDTWNLLLDFSKTIDPDLSNYDEEGAWP-VLIDEFVEYLRD 250 (260)
T ss_pred CHHHHHHHHHHHhCCCCchHHHHH---HHHHhCcCcccCcccHHHHHHHHHhcCccccCccccccch-HHHHHHHHHHHH
Confidence 688999999999955555555554 4444444332223332222211 11 11233 678889998887
Q ss_pred hCC
Q 013667 267 YGT 269 (438)
Q Consensus 267 ~G~ 269 (438)
.+.
T Consensus 251 ~~~ 253 (260)
T KOG3077|consen 251 KQS 253 (260)
T ss_pred hcc
Confidence 654
Done!