BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013669
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
IT+ + + EA M + IGG+PVV+ ++ ++VG ++ RD+R F
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD-EEGRLVGLLTNRDVR--------FEKNLSKK 156
Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYX--XXXXXXXXXXX 406
++D M TP + P LE ++H HRI
Sbjct: 157 IKDLM------TPREKLIVAPPDISLEKAK-EILHQ------HRIEKLPLVSKDNKLVGL 203
Query: 407 ITLRDVISCFIFEPPN 422
IT++D++S + E PN
Sbjct: 204 ITIKDIMS--VIEHPN 217
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
++VITI +E + A M+ + I G+PVVE +K+VG ++ +DI +
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVE--DEKVVGIITKKDI----------AARE 148
Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTL 378
V++ M V T P+S +V + +E+ +
Sbjct: 149 GKLVKELMTKEVITVPESIEVEEALKIMIENRI 181
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
+ + EVIT+ + + EA K M +N I +PVV+ ++ K+VG +++ D+
Sbjct: 155 LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDL 202
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 266 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGN 325
+F +A I+ +GL M + ++ + + ++ AF R + + E + K+VG
Sbjct: 19 YFQSMAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV-SKVDDFLANEAKGTKVVGA 77
Query: 326 VSIRDIRHLLLKPE---LFSNFRQLTVRDFMNAVVPTTPDSGKV 366
S++++ L KP L Q V DF+ +VP D+G +
Sbjct: 78 QSLKEMVSKLKKPRRIILLVKAGQ-AVDDFIEKLVPLL-DTGDI 119
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 231 RLRNVPIIEPGTPDIKNYITQSAVVQGLEGC--------KGRDWFDIIASQPISDLGLPF 282
+ R +P++ G + IT +V + G K F ++P+ ++
Sbjct: 34 KYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREI---- 89
Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336
+ VIT++ N I EA + N+GG P+V + +++ ++ RD+ LL
Sbjct: 90 -MEENVITLKENADIDEAIETFLTKNVGGAPIV-NDENQLISLITERDVIRALL 141
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 280 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 339
+ + +++T+ I +A M +N +PVV K+VG ++ DI +
Sbjct: 6 MKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65
Query: 340 LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSV 390
++ R+ R+F+ A+ + + N IT K + + I + +K+V
Sbjct: 66 KYNLIREKHERNFLAAINEPVREIMEEN-VITLKENADIDEAIETFLTKNV 115
>pdb|2LMD|A Chain A, Minimal Constraints Solution Nmr Structure Of Prospero
Homeobox Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4660b
Length = 174
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 338 PELFSNFRQLTVRDFMNAVVP---TTPDSGKVNPPITCKLESTLGSVIHS 384
PE F Q+T+R+F NA++ P K + CKL+S + + S
Sbjct: 115 PERFLEVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKS 164
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 339
VIT + +E ++EAF++ I +PV++ + K++G V+ DI + L++ +
Sbjct: 18 VITAKRHEGVVEAFEKXLKYKISSLPVIDDEN-KVIGIVTTTDIGYNLIRDK 68
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
+A I +GL M + + I+S + + R+++ + E + K IVG SI
Sbjct: 2 MAKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ--EAKGKNIVGTYSIE 59
Query: 330 DIRHLLLKP 338
+ + L KP
Sbjct: 60 EFVNALEKP 68
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
+A I +GL M + + I+S + + R+++ + E + K IVG SI
Sbjct: 3 MAKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ--EAKGKNIVGTYSIE 60
Query: 330 DIRHLLLKP 338
+ + L KP
Sbjct: 61 EFVNALEKP 69
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
IT SN I+EA K + +NI +P+V+ + K+VG ++ DI L + + ++
Sbjct: 14 ITAHSNISIMEAAKILIKHNINHLPIVD-EHGKLVGIITSWDIAKALAQNK--KTIEEIM 70
Query: 349 VRDFMNA 355
R+ + A
Sbjct: 71 TRNVITA 77
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 332
+T+ + I+E + ++ G PVVE Q ++VG V+ RD+R
Sbjct: 119 VTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLR 160
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
IT SN I+EA K + +NI +P+V+ + K+VG ++ DI L + + ++
Sbjct: 12 ITAHSNISIMEAAKILIKHNINHLPIVD-EHGKLVGIITSWDIAKALAQNK--KTIEEIM 68
Query: 349 VRDFMNA 355
R+ + A
Sbjct: 69 TRNVITA 75
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 332
+T+ + I+E + ++ G PVVE Q ++VG V+ RD+R
Sbjct: 99 VTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLR 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,399,498
Number of Sequences: 62578
Number of extensions: 373900
Number of successful extensions: 879
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 22
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)