Query 013669
Match_columns 438
No_of_seqs 416 out of 3495
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 9.1E-30 2E-34 251.8 22.2 294 57-436 84-378 (381)
2 COG2524 Predicted transcriptio 99.8 4.6E-18 1E-22 153.3 13.6 124 270-418 169-292 (294)
3 COG2524 Predicted transcriptio 99.7 1.1E-16 2.3E-21 144.5 12.9 126 191-336 166-291 (294)
4 COG3448 CBS-domain-containing 99.7 3.4E-16 7.3E-21 143.7 9.1 128 271-418 243-373 (382)
5 COG3620 Predicted transcriptio 99.6 4.3E-15 9.3E-20 124.6 12.9 137 250-418 49-185 (187)
6 PRK14869 putative manganese-de 99.6 2.6E-14 5.7E-19 150.3 18.5 193 197-416 68-303 (546)
7 cd04603 CBS_pair_KefB_assoc Th 99.6 3.4E-14 7.3E-19 117.0 13.2 109 287-414 2-110 (111)
8 cd04618 CBS_pair_5 The CBS dom 99.6 2.8E-14 6.1E-19 115.0 12.3 95 287-414 2-97 (98)
9 cd04619 CBS_pair_6 The CBS dom 99.6 4.9E-14 1.1E-18 116.6 14.0 112 287-414 2-113 (114)
10 COG3448 CBS-domain-containing 99.6 1.6E-14 3.5E-19 132.8 11.5 131 194-336 242-372 (382)
11 PRK15094 magnesium/cobalt effl 99.6 7.6E-14 1.7E-18 134.5 15.8 132 271-425 65-197 (292)
12 cd04641 CBS_pair_28 The CBS do 99.6 5.3E-14 1.1E-18 117.4 12.8 119 287-415 2-120 (120)
13 cd04630 CBS_pair_17 The CBS do 99.5 3E-13 6.5E-18 111.7 14.7 111 287-414 2-113 (114)
14 cd04617 CBS_pair_4 The CBS dom 99.5 3E-13 6.5E-18 112.5 14.4 114 287-414 2-117 (118)
15 cd04607 CBS_pair_NTP_transfera 99.5 3E-13 6.6E-18 111.4 14.2 110 287-414 3-112 (113)
16 cd04600 CBS_pair_HPP_assoc Thi 99.5 2.4E-13 5.3E-18 113.8 13.8 114 287-414 3-123 (124)
17 TIGR03520 GldE gliding motilit 99.5 2.6E-13 5.6E-18 137.0 16.4 130 271-425 189-319 (408)
18 COG3620 Predicted transcriptio 99.5 9.9E-14 2.1E-18 116.5 10.9 134 182-336 51-184 (187)
19 cd04608 CBS_pair_PALP_assoc Th 99.5 1.3E-13 2.8E-18 116.2 10.9 113 287-416 3-124 (124)
20 cd04593 CBS_pair_EriC_assoc_ba 99.5 5.7E-13 1.2E-17 110.1 14.2 111 287-414 2-114 (115)
21 cd04623 CBS_pair_10 The CBS do 99.5 7.8E-13 1.7E-17 108.5 14.6 111 287-414 2-112 (113)
22 cd04641 CBS_pair_28 The CBS do 99.5 4.6E-13 1E-17 111.7 13.4 117 210-333 2-119 (120)
23 cd04631 CBS_pair_18 The CBS do 99.5 5.4E-13 1.2E-17 111.8 13.9 115 287-415 2-125 (125)
24 cd04642 CBS_pair_29 The CBS do 99.5 2.6E-13 5.6E-18 114.3 12.0 122 287-415 2-126 (126)
25 cd04803 CBS_pair_15 The CBS do 99.5 5.7E-13 1.2E-17 111.2 14.0 115 287-415 2-122 (122)
26 cd04615 CBS_pair_2 The CBS dom 99.5 6.7E-13 1.4E-17 109.2 13.9 111 287-414 2-112 (113)
27 cd04618 CBS_pair_5 The CBS dom 99.5 4E-13 8.7E-18 108.3 12.0 95 210-333 2-97 (98)
28 PRK14869 putative manganese-de 99.5 9.3E-14 2E-18 146.1 10.6 282 57-415 84-391 (546)
29 cd04605 CBS_pair_MET2_assoc Th 99.5 1.2E-12 2.6E-17 107.1 14.7 107 287-414 3-109 (110)
30 cd04801 CBS_pair_M50_like This 99.5 4.4E-13 9.5E-18 110.6 12.1 111 287-414 2-113 (114)
31 cd04627 CBS_pair_14 The CBS do 99.5 4.8E-13 1E-17 112.1 12.5 113 287-413 2-121 (123)
32 cd04621 CBS_pair_8 The CBS dom 99.5 9.1E-13 2E-17 112.7 14.4 113 287-414 2-134 (135)
33 cd04639 CBS_pair_26 The CBS do 99.5 7.3E-13 1.6E-17 108.6 13.3 109 287-414 2-110 (111)
34 COG2905 Predicted signal-trans 99.5 2.5E-13 5.4E-18 135.5 12.0 123 273-418 149-271 (610)
35 cd04626 CBS_pair_13 The CBS do 99.5 1.1E-12 2.4E-17 107.6 14.1 109 287-414 2-110 (111)
36 cd04596 CBS_pair_DRTGG_assoc T 99.5 8.6E-13 1.9E-17 107.8 13.2 105 287-414 3-107 (108)
37 cd04643 CBS_pair_30 The CBS do 99.5 9.7E-13 2.1E-17 108.7 13.6 113 287-415 2-116 (116)
38 PRK11543 gutQ D-arabinose 5-ph 99.5 5.5E-13 1.2E-17 131.1 14.1 121 272-415 196-318 (321)
39 cd04619 CBS_pair_6 The CBS dom 99.5 9.3E-13 2E-17 108.9 13.4 111 211-333 3-113 (114)
40 PRK07807 inosine 5-monophospha 99.5 9.8E-13 2.1E-17 134.3 16.3 119 274-420 90-208 (479)
41 cd04590 CBS_pair_CorC_HlyC_ass 99.5 1.4E-12 3.1E-17 106.9 14.4 108 287-414 2-110 (111)
42 cd04603 CBS_pair_KefB_assoc Th 99.5 7.7E-13 1.7E-17 108.9 12.8 108 211-333 3-110 (111)
43 cd04629 CBS_pair_16 The CBS do 99.5 8.4E-13 1.8E-17 108.7 13.0 112 287-414 2-113 (114)
44 cd04624 CBS_pair_11 The CBS do 99.5 1.5E-12 3.3E-17 106.9 14.4 110 287-414 2-111 (112)
45 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.2E-12 2.6E-17 106.3 13.6 104 287-414 2-105 (106)
46 cd04632 CBS_pair_19 The CBS do 99.5 1.3E-12 2.9E-17 110.2 13.8 114 287-414 2-127 (128)
47 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 1.3E-12 2.8E-17 107.5 13.4 111 287-414 3-113 (114)
48 PRK10892 D-arabinose 5-phospha 99.5 8.8E-13 1.9E-17 129.9 14.4 122 272-415 201-323 (326)
49 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 1.6E-12 3.4E-17 106.9 13.6 111 287-414 2-113 (114)
50 cd04635 CBS_pair_22 The CBS do 99.5 1.3E-12 2.9E-17 108.9 13.2 114 287-414 2-121 (122)
51 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 2.3E-12 4.9E-17 105.1 14.2 106 287-414 3-108 (109)
52 cd04614 CBS_pair_1 The CBS dom 99.4 1.2E-12 2.5E-17 105.1 11.8 94 287-414 2-95 (96)
53 TIGR00400 mgtE Mg2+ transporte 99.4 2.8E-13 6.2E-18 138.6 10.3 179 188-416 122-305 (449)
54 cd04620 CBS_pair_7 The CBS dom 99.4 2.1E-12 4.5E-17 106.7 13.6 110 287-414 2-114 (115)
55 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4E-12 8.6E-17 104.0 14.9 108 287-414 2-109 (110)
56 cd04636 CBS_pair_23 The CBS do 99.4 2.3E-12 5E-17 109.4 14.0 114 287-415 2-132 (132)
57 cd04586 CBS_pair_BON_assoc Thi 99.4 1.4E-12 3.1E-17 111.2 12.6 113 287-414 3-134 (135)
58 cd04640 CBS_pair_27 The CBS do 99.4 1.1E-12 2.4E-17 110.6 11.5 112 287-414 2-125 (126)
59 cd04595 CBS_pair_DHH_polyA_Pol 99.4 4.7E-12 1E-16 103.6 15.0 107 287-414 3-109 (110)
60 cd04800 CBS_pair_CAP-ED_DUF294 99.4 4.9E-12 1.1E-16 103.6 15.1 109 287-414 2-110 (111)
61 cd04617 CBS_pair_4 The CBS dom 99.4 2.4E-12 5.3E-17 107.0 13.2 112 210-333 2-117 (118)
62 cd04587 CBS_pair_CAP-ED_DUF294 99.4 3E-12 6.5E-17 105.2 13.5 111 287-414 2-112 (113)
63 cd04627 CBS_pair_14 The CBS do 99.4 2.5E-12 5.3E-17 107.8 13.1 118 210-333 2-122 (123)
64 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 6.1E-12 1.3E-16 102.9 14.7 109 287-414 2-110 (111)
65 cd04625 CBS_pair_12 The CBS do 99.4 7.1E-12 1.5E-16 102.8 15.0 110 287-414 2-111 (112)
66 KOG1764 5'-AMP-activated prote 99.4 4.6E-12 1E-16 125.9 16.3 191 55-337 168-360 (381)
67 cd04633 CBS_pair_20 The CBS do 99.4 4E-12 8.7E-17 105.9 13.5 112 287-414 2-120 (121)
68 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 6.4E-12 1.4E-16 102.8 14.3 109 287-414 2-110 (111)
69 cd04585 CBS_pair_ACT_assoc2 Th 99.4 5.4E-12 1.2E-16 104.9 13.8 113 287-414 2-121 (122)
70 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1E-11 2.3E-16 126.7 18.5 114 282-420 93-206 (475)
71 PRK10892 D-arabinose 5-phospha 99.4 3.8E-12 8.3E-17 125.4 14.9 124 195-334 200-323 (326)
72 cd04589 CBS_pair_CAP-ED_DUF294 99.4 9.6E-12 2.1E-16 102.0 14.9 110 287-415 2-111 (111)
73 PRK11543 gutQ D-arabinose 5-ph 99.4 3.7E-12 8E-17 125.2 14.1 121 196-334 196-318 (321)
74 cd04622 CBS_pair_9 The CBS dom 99.4 9.2E-12 2E-16 102.3 14.3 110 287-414 2-112 (113)
75 cd04600 CBS_pair_HPP_assoc Thi 99.4 5.3E-12 1.1E-16 105.6 13.0 118 209-333 2-123 (124)
76 PRK05567 inosine 5'-monophosph 99.4 4.7E-12 1E-16 130.8 15.1 176 199-415 89-265 (486)
77 cd04630 CBS_pair_17 The CBS do 99.4 8.8E-12 1.9E-16 102.9 13.9 112 210-333 2-113 (114)
78 cd04607 CBS_pair_NTP_transfera 99.4 8.3E-12 1.8E-16 102.8 13.7 109 211-333 4-112 (113)
79 TIGR01302 IMP_dehydrog inosine 99.4 8.2E-12 1.8E-16 127.7 16.2 115 282-418 85-202 (450)
80 cd04601 CBS_pair_IMPDH This cd 99.4 5.9E-12 1.3E-16 102.8 12.3 106 287-414 3-109 (110)
81 PRK11573 hypothetical protein; 99.4 1.1E-11 2.5E-16 125.1 16.9 135 270-425 184-319 (413)
82 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.2E-11 2.6E-16 100.2 13.9 103 287-414 2-104 (105)
83 cd04606 CBS_pair_Mg_transporte 99.4 4.7E-12 1E-16 103.6 11.6 103 291-416 2-109 (109)
84 cd04605 CBS_pair_MET2_assoc Th 99.4 1.1E-11 2.4E-16 101.4 13.7 108 209-333 2-109 (110)
85 cd04623 CBS_pair_10 The CBS do 99.4 1.3E-11 2.9E-16 101.1 14.2 111 210-333 2-112 (113)
86 cd04639 CBS_pair_26 The CBS do 99.4 6.1E-12 1.3E-16 103.1 12.2 109 210-333 2-110 (111)
87 PRK01862 putative voltage-gate 99.4 5.3E-12 1.1E-16 133.6 14.6 127 271-418 445-572 (574)
88 cd04624 CBS_pair_11 The CBS do 99.4 1.4E-11 3.1E-16 101.1 14.0 110 210-333 2-111 (112)
89 cd04801 CBS_pair_M50_like This 99.4 5.3E-12 1.2E-16 104.1 11.5 110 210-333 2-113 (114)
90 PRK07807 inosine 5-monophospha 99.4 1.3E-11 2.9E-16 126.0 16.8 178 194-417 86-263 (479)
91 cd04602 CBS_pair_IMPDH_2 This 99.4 1.2E-11 2.6E-16 102.1 13.6 107 287-414 3-113 (114)
92 cd04637 CBS_pair_24 The CBS do 99.4 1E-11 2.2E-16 103.7 13.2 114 287-415 2-122 (122)
93 cd04643 CBS_pair_30 The CBS do 99.4 8.6E-12 1.9E-16 103.0 12.5 114 210-333 2-115 (116)
94 cd04802 CBS_pair_3 The CBS dom 99.4 2.3E-11 4.9E-16 99.8 15.0 110 287-414 2-111 (112)
95 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.6E-11 3.5E-16 100.1 13.9 109 287-415 2-110 (110)
96 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.6E-11 3.5E-16 102.1 13.8 113 287-414 2-120 (121)
97 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.6E-11 3.5E-16 101.3 13.7 111 210-333 2-114 (115)
98 cd04803 CBS_pair_15 The CBS do 99.4 1.6E-11 3.4E-16 102.4 13.2 117 210-333 2-121 (122)
99 cd04642 CBS_pair_29 The CBS do 99.4 1.4E-11 3E-16 103.7 12.9 117 210-333 2-125 (126)
100 PRK05567 inosine 5'-monophosph 99.4 1.6E-11 3.5E-16 126.8 16.0 115 282-418 92-206 (486)
101 PLN02274 inosine-5'-monophosph 99.3 1.4E-11 3.1E-16 126.8 15.4 116 283-418 106-223 (505)
102 cd04608 CBS_pair_PALP_assoc Th 99.3 5E-12 1.1E-16 106.4 10.0 113 209-334 2-123 (124)
103 cd04610 CBS_pair_ParBc_assoc T 99.3 2E-11 4.4E-16 99.2 13.2 104 287-414 3-106 (107)
104 cd04594 CBS_pair_EriC_assoc_ar 99.3 2.6E-11 5.6E-16 98.4 13.6 100 289-414 4-103 (104)
105 cd04634 CBS_pair_21 The CBS do 99.3 2.8E-11 6.1E-16 104.4 14.6 112 287-414 2-142 (143)
106 cd04615 CBS_pair_2 The CBS dom 99.3 2.3E-11 5E-16 100.0 13.4 110 211-333 3-112 (113)
107 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 2.9E-11 6.2E-16 98.5 13.8 106 210-333 3-108 (109)
108 cd04626 CBS_pair_13 The CBS do 99.3 2.3E-11 5.1E-16 99.6 13.1 109 210-333 2-110 (111)
109 cd04631 CBS_pair_18 The CBS do 99.3 1.6E-11 3.5E-16 102.8 12.3 118 210-333 2-124 (125)
110 COG0517 FOG: CBS domain [Gener 99.3 4E-11 8.8E-16 99.0 14.6 112 283-413 5-117 (117)
111 cd04621 CBS_pair_8 The CBS dom 99.3 3.3E-11 7.1E-16 103.0 14.2 116 210-333 2-134 (135)
112 TIGR00400 mgtE Mg2+ transporte 99.3 2.1E-11 4.7E-16 124.8 15.3 122 271-420 129-255 (449)
113 cd04614 CBS_pair_1 The CBS dom 99.3 1.9E-11 4.2E-16 97.9 11.9 94 210-333 2-95 (96)
114 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.7E-11 8E-16 97.5 13.7 104 210-333 2-105 (106)
115 COG4109 Predicted transcriptio 99.3 1.1E-11 2.4E-16 117.0 11.8 118 273-417 188-306 (432)
116 cd04629 CBS_pair_16 The CBS do 99.3 1.7E-11 3.6E-16 100.9 11.7 112 210-333 2-113 (114)
117 cd02205 CBS_pair The CBS domai 99.3 4.2E-11 9.1E-16 97.3 13.9 111 287-414 2-112 (113)
118 cd04598 CBS_pair_GGDEF_assoc T 99.3 3.2E-11 6.9E-16 100.1 12.9 113 287-414 2-118 (119)
119 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.8E-11 6E-16 98.8 12.1 106 209-333 2-107 (108)
120 PRK07107 inosine 5-monophospha 99.3 2.4E-11 5.2E-16 124.9 14.1 111 288-416 107-219 (502)
121 TIGR03520 GldE gliding motilit 99.3 3.4E-11 7.4E-16 121.6 15.1 169 188-387 182-350 (408)
122 cd04636 CBS_pair_23 The CBS do 99.3 3.8E-11 8.3E-16 101.9 13.1 116 210-333 2-131 (132)
123 cd04632 CBS_pair_19 The CBS do 99.3 3.9E-11 8.5E-16 101.1 12.9 118 210-333 2-127 (128)
124 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 4.6E-11 9.9E-16 98.2 13.0 112 209-333 2-113 (114)
125 PRK15094 magnesium/cobalt effl 99.3 2.7E-11 5.9E-16 116.8 13.2 194 187-420 57-250 (292)
126 PTZ00314 inosine-5'-monophosph 99.3 2.9E-11 6.4E-16 124.4 13.7 116 282-417 101-218 (495)
127 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 5.9E-11 1.3E-15 97.4 13.0 112 210-333 2-113 (114)
128 cd04586 CBS_pair_BON_assoc Thi 99.3 3.1E-11 6.7E-16 102.9 11.6 117 209-333 2-134 (135)
129 cd04588 CBS_pair_CAP-ED_DUF294 99.3 7.5E-11 1.6E-15 96.4 13.4 108 210-333 2-109 (110)
130 cd04620 CBS_pair_7 The CBS dom 99.3 7.7E-11 1.7E-15 97.2 13.3 110 210-333 2-114 (115)
131 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 9E-11 1.9E-15 95.9 13.6 109 210-333 2-110 (111)
132 cd04585 CBS_pair_ACT_assoc2 Th 99.3 7.1E-11 1.5E-15 98.1 13.1 116 210-333 2-121 (122)
133 cd04640 CBS_pair_27 The CBS do 99.3 5.4E-11 1.2E-15 100.1 12.4 112 210-333 2-125 (126)
134 TIGR00393 kpsF KpsF/GutQ famil 99.3 3.3E-11 7.2E-16 115.4 12.5 113 273-408 155-268 (268)
135 cd04800 CBS_pair_CAP-ED_DUF294 99.3 9.5E-11 2.1E-15 95.9 13.3 109 210-333 2-110 (111)
136 cd04625 CBS_pair_12 The CBS do 99.3 9.7E-11 2.1E-15 96.0 13.4 110 210-333 2-111 (112)
137 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.1E-10 2.4E-15 95.4 13.7 108 209-333 2-109 (110)
138 cd04591 CBS_pair_EriC_assoc_eu 99.3 6.7E-11 1.4E-15 96.4 12.2 101 287-415 3-105 (105)
139 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.2E-10 2.6E-15 118.9 16.8 120 195-338 86-205 (475)
140 cd04590 CBS_pair_CorC_HlyC_ass 99.3 9.7E-11 2.1E-15 95.9 13.2 109 210-333 2-110 (111)
141 COG1253 TlyC Hemolysins and re 99.3 7.2E-11 1.6E-15 120.3 15.0 134 270-426 203-337 (429)
142 PRK01862 putative voltage-gate 99.3 5.4E-11 1.2E-15 125.9 14.5 127 194-336 444-571 (574)
143 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1E-10 2.2E-15 96.0 13.1 111 210-333 2-112 (113)
144 cd04635 CBS_pair_22 The CBS do 99.3 6.2E-11 1.3E-15 98.8 11.9 117 210-333 2-121 (122)
145 cd04802 CBS_pair_3 The CBS dom 99.3 1.5E-10 3.2E-15 95.0 14.0 110 210-333 2-111 (112)
146 COG2905 Predicted signal-trans 99.3 4.1E-11 8.8E-16 119.9 12.4 126 194-337 146-271 (610)
147 cd04638 CBS_pair_25 The CBS do 99.3 1.8E-10 3.9E-15 93.6 14.0 104 287-414 2-105 (106)
148 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-10 2.7E-15 95.0 12.9 109 210-333 2-110 (111)
149 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1.7E-10 3.7E-15 94.5 13.7 109 210-333 2-110 (111)
150 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.6E-10 3.5E-15 96.0 12.8 116 210-333 2-120 (121)
151 COG0517 FOG: CBS domain [Gener 99.2 2.1E-10 4.6E-15 94.6 13.4 108 209-331 7-116 (117)
152 TIGR01137 cysta_beta cystathio 99.2 1.4E-10 3.1E-15 119.4 15.1 126 266-416 328-453 (454)
153 cd04602 CBS_pair_IMPDH_2 This 99.2 1.8E-10 3.8E-15 95.1 12.8 106 210-333 3-113 (114)
154 cd04622 CBS_pair_9 The CBS dom 99.2 2E-10 4.2E-15 94.3 13.0 110 210-333 2-112 (113)
155 cd04637 CBS_pair_24 The CBS do 99.2 1.2E-10 2.5E-15 97.2 11.6 116 210-333 2-121 (122)
156 cd04633 CBS_pair_20 The CBS do 99.2 1.5E-10 3.1E-15 96.4 11.9 114 210-333 2-120 (121)
157 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.3E-10 2.7E-15 111.3 12.8 113 197-327 155-268 (268)
158 cd04601 CBS_pair_IMPDH This cd 99.2 1.6E-10 3.4E-15 94.3 11.3 107 209-333 2-109 (110)
159 cd04599 CBS_pair_GGDEF_assoc2 99.2 2.5E-10 5.5E-15 92.3 12.4 102 210-332 2-103 (105)
160 cd04606 CBS_pair_Mg_transporte 99.2 1.6E-10 3.6E-15 94.4 11.4 102 214-334 2-108 (109)
161 cd02205 CBS_pair The CBS domai 99.2 3.7E-10 8E-15 91.6 13.4 111 210-333 2-112 (113)
162 PRK07107 inosine 5-monophospha 99.2 1.3E-10 2.9E-15 119.4 13.1 122 199-336 96-220 (502)
163 cd04609 CBS_pair_PALP_assoc2 T 99.2 3.8E-10 8.3E-15 91.9 12.4 108 210-333 2-109 (110)
164 cd04594 CBS_pair_EriC_assoc_ar 99.2 5.3E-10 1.1E-14 90.7 12.4 100 212-333 4-103 (104)
165 PLN02274 inosine-5'-monophosph 99.2 4.1E-10 8.9E-15 116.1 13.9 113 209-337 108-223 (505)
166 cd04610 CBS_pair_ParBc_assoc T 99.2 6.7E-10 1.5E-14 90.1 12.5 105 209-333 2-106 (107)
167 cd04591 CBS_pair_EriC_assoc_eu 99.1 7.2E-10 1.6E-14 90.3 12.0 100 210-333 3-104 (105)
168 TIGR01302 IMP_dehydrog inosine 99.1 5.4E-10 1.2E-14 114.3 13.1 112 209-336 88-201 (450)
169 cd04634 CBS_pair_21 The CBS do 99.1 1.2E-09 2.7E-14 94.1 13.0 115 210-333 2-142 (143)
170 TIGR01137 cysta_beta cystathio 99.1 1.2E-09 2.5E-14 112.7 15.0 122 194-335 332-453 (454)
171 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.2E-09 2.6E-14 93.1 12.0 110 287-400 2-119 (133)
172 COG4535 CorC Putative Mg2+ and 99.1 6E-10 1.3E-14 99.9 9.7 133 271-426 65-198 (293)
173 cd04638 CBS_pair_25 The CBS do 99.1 2.6E-09 5.5E-14 86.7 12.8 104 210-333 2-105 (106)
174 cd04598 CBS_pair_GGDEF_assoc T 99.1 2.6E-09 5.6E-14 88.5 12.3 113 210-333 2-118 (119)
175 COG4109 Predicted transcriptio 99.0 1.3E-09 2.7E-14 103.2 11.0 119 197-336 188-306 (432)
176 PTZ00314 inosine-5'-monophosph 99.0 1.4E-09 3.1E-14 112.0 12.3 112 209-336 104-218 (495)
177 COG2239 MgtE Mg/Co/Ni transpor 99.0 1.4E-09 3.1E-14 109.5 10.8 126 271-424 130-260 (451)
178 PRK11573 hypothetical protein; 99.0 5E-09 1.1E-13 105.9 14.7 134 188-336 178-311 (413)
179 cd04592 CBS_pair_EriC_assoc_eu 99.0 6.9E-09 1.5E-13 88.5 11.8 106 210-317 2-117 (133)
180 COG4536 CorB Putative Mg2+ and 99.0 3.3E-09 7.1E-14 101.5 10.4 129 271-420 198-327 (423)
181 PF00571 CBS: CBS domain CBS d 99.0 2.4E-09 5.2E-14 76.8 7.3 56 349-417 1-56 (57)
182 COG1253 TlyC Hemolysins and re 98.9 5.8E-08 1.3E-12 99.0 17.4 135 186-337 195-329 (429)
183 PF00571 CBS: CBS domain CBS d 98.8 1.9E-08 4.2E-13 72.1 7.8 56 199-259 1-56 (57)
184 TIGR01186 proV glycine betaine 98.7 5E-07 1.1E-11 89.8 17.7 156 233-418 198-359 (363)
185 COG4535 CorC Putative Mg2+ and 98.7 3E-08 6.6E-13 89.1 7.0 137 183-336 53-189 (293)
186 COG2239 MgtE Mg/Co/Ni transpor 98.7 1.2E-07 2.5E-12 95.9 11.7 127 188-337 123-254 (451)
187 COG4536 CorB Putative Mg2+ and 98.7 2.8E-07 6E-12 88.5 12.1 168 192-386 195-362 (423)
188 PRK10070 glycine betaine trans 98.7 9.1E-07 2E-11 89.1 16.5 105 291-418 290-394 (400)
189 KOG2550 IMP dehydrogenase/GMP 98.6 1.1E-07 2.3E-12 91.9 7.7 109 287-416 117-227 (503)
190 TIGR01186 proV glycine betaine 98.4 7.9E-06 1.7E-10 81.3 14.2 108 211-337 252-359 (363)
191 KOG2550 IMP dehydrogenase/GMP 98.3 1.1E-06 2.3E-11 85.2 7.5 110 209-335 116-227 (503)
192 PRK10070 glycine betaine trans 98.2 1.3E-05 2.8E-10 80.7 13.0 107 213-338 289-395 (400)
193 KOG0474 Cl- channel CLC-7 and 98.2 2.6E-06 5.7E-11 86.6 7.1 149 272-426 581-756 (762)
194 KOG0474 Cl- channel CLC-7 and 98.1 5.8E-06 1.3E-10 84.2 8.0 135 194-334 579-745 (762)
195 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.7E-05 3.6E-10 65.4 6.6 55 347-414 58-112 (113)
196 smart00116 CBS Domain in cysta 97.9 3E-05 6.5E-10 52.2 6.2 47 369-416 2-48 (49)
197 cd04597 CBS_pair_DRTGG_assoc2 97.7 8.4E-05 1.8E-09 61.1 6.5 55 197-256 58-112 (113)
198 KOG0475 Cl- channel CLC-3 and 97.7 0.00038 8.2E-09 71.4 12.2 142 187-335 533-694 (696)
199 KOG0475 Cl- channel CLC-3 and 97.6 0.00066 1.4E-08 69.7 11.8 127 287-416 557-694 (696)
200 smart00116 CBS Domain in cysta 97.5 0.00034 7.3E-09 46.8 6.2 47 211-258 2-48 (49)
201 TIGR03415 ABC_choXWV_ATP choli 97.0 0.016 3.5E-07 58.2 13.9 144 233-418 233-381 (382)
202 COG4175 ProV ABC-type proline/ 96.4 0.006 1.3E-07 58.4 5.6 157 219-418 224-384 (386)
203 TIGR03415 ABC_choXWV_ATP choli 95.0 0.18 3.8E-06 50.7 10.3 110 194-336 271-380 (382)
204 COG4175 ProV ABC-type proline/ 94.8 0.058 1.3E-06 51.8 5.9 111 196-336 273-383 (386)
205 KOG0476 Cl- channel CLC-2 and 93.5 0.28 6E-06 52.1 8.1 61 197-261 588-649 (931)
206 COG1125 OpuBA ABC-type proline 92.6 0.58 1.3E-05 43.9 7.9 111 287-415 188-308 (309)
207 KOG2118 Predicted membrane pro 86.6 1.1 2.3E-05 46.7 5.3 125 272-418 203-329 (498)
208 COG1125 OpuBA ABC-type proline 86.0 4.2 9E-05 38.3 8.1 111 211-334 189-308 (309)
209 KOG2118 Predicted membrane pro 66.7 8.9 0.00019 40.0 4.9 127 190-331 197-324 (498)
210 KOG0476 Cl- channel CLC-2 and 66.2 5.9 0.00013 42.6 3.5 52 367-418 596-648 (931)
211 PRK11388 DNA-binding transcrip 49.7 54 0.0012 35.4 7.6 97 222-327 63-162 (638)
212 PF05198 IF3_N: Translation in 40.0 56 0.0012 24.7 4.2 27 390-417 12-38 (76)
213 PRK11388 DNA-binding transcrip 35.6 1.1E+02 0.0024 33.1 7.3 96 297-409 61-163 (638)
214 PRK10026 arsenate reductase; P 33.7 3E+02 0.0065 23.4 9.1 109 288-416 6-116 (141)
215 smart00594 UAS UAS domain. 21.2 1E+02 0.0022 25.3 3.0 60 194-257 50-120 (122)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.97 E-value=9.1e-30 Score=251.75 Aligned_cols=294 Identities=26% Similarity=0.379 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccchh
Q 013669 57 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA 136 (438)
Q Consensus 57 ~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (438)
..++.+|+..|..+.++++||+|... ++++|++++.|++..++..+...
T Consensus 84 ~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~~~~~------------------------ 132 (381)
T KOG1764|consen 84 KLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRYYKSK------------------------ 132 (381)
T ss_pred CCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHhhccC------------------------
Confidence 89999999999999999999999987 79999999999999877654210
Q ss_pred hhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEEeC
Q 013669 137 LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT 216 (438)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~ 216 (438)
...+....+..........+..+.....+++++.+.+
T Consensus 133 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p 169 (381)
T KOG1764|consen 133 -------------------------------------------SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISP 169 (381)
T ss_pred -------------------------------------------CcHHHHhhhhhhhccccchhhhhhccccCCCceeecC
Confidence 0112222232233333344555555556677799999
Q ss_pred CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEcCCCc
Q 013669 217 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNEL 296 (438)
Q Consensus 217 ~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~ 296 (438)
..++.++...+.+++++++||.|.+.+++.+++|+..|++++..+.+.-++..+..+++.+++++.+. ++..+..+++
T Consensus 170 ~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~--~i~~i~~~~~ 247 (381)
T KOG1764|consen 170 ESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS--NIASISEDTP 247 (381)
T ss_pred cHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh--hheeecCCCc
Confidence 99999999999999999999999666899999999999999998866666778889999999887554 6999999999
Q ss_pred HHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc-HHHHhcccCCCCCCCCCCCCCeEeCCC
Q 013669 297 ILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT-VRDFMNAVVPTTPDSGKVNPPITCKLE 375 (438)
Q Consensus 297 l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~-v~~~m~~~~~~~~~~~~~~~~~~v~~~ 375 (438)
+.+|+++|.+++++++||++. .|+.+|+++..|+..+........ ...+ +.+..... ..+..++++|+++
T Consensus 248 v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~--~~~~~l~~~~~~~------~~~~~~vvtc~~~ 318 (381)
T KOG1764|consen 248 VIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNN--LDLSCLSEALSHR------PIRFEGVVTCRPT 318 (381)
T ss_pred HHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCc--cchhHHHHHhhhc------ccccCccEEEeec
Confidence 999999999999999999998 777799999999999987654422 1233 55555431 1233468999999
Q ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccccchhhHHHhh
Q 013669 376 STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLL 436 (438)
Q Consensus 376 ~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~~~~~~~~~~~ 436 (438)
+||.+++.+|..+++||+||||++| +++|+||++||+.++..+|.+++...+++......
T Consensus 319 ssL~~vi~~lv~~~vHRl~VVd~~~-~l~GvvSLsDil~~l~~~p~~~~~~~~~~~~~~~~ 378 (381)
T KOG1764|consen 319 STLAEVIDKLVAHRVHRLWVVDEDG-VLVGVISLSDILSYLVLTPSGGTPDAPSSSMSTSE 378 (381)
T ss_pred chHHHHHHHHHhcCceEEEEEcCCC-cEEEEeeHHHHHHHHHhCccCCCCCCcCccccccC
Confidence 9999999999999999999999998 99999999999999999999999998887665443
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.77 E-value=4.6e-18 Score=153.33 Aligned_cols=124 Identities=27% Similarity=0.457 Sum_probs=115.0
Q ss_pred cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
+...++.+ +|++ +++++.+++++.++.+.|.++++++.||+| +++++|++|.+|+..++.+... ...|
T Consensus 169 iPk~~V~~----~~s~-~~i~v~~d~tl~eaak~f~~~~i~GaPVvd--~dk~vGiit~~dI~~aia~g~~-----~~kV 236 (294)
T COG2524 169 IPKEKVKN----LMSK-KLITVRPDDTLREAAKLFYEKGIRGAPVVD--DDKIVGIITLSDIAKAIANGNL-----DAKV 236 (294)
T ss_pred cCcchhhh----hccC-CceEecCCccHHHHHHHHHHcCccCCceec--CCceEEEEEHHHHHHHHHcCCc-----cccH
Confidence 46778888 7887 999999999999999999999999999999 4699999999999999987644 5689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
.++|.+ ++++++.++.+.||+++|..+++.|+.|+|.+| +++|+||++||++.++.
T Consensus 237 ~~~M~k------------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g-kpvGiITrTDIL~~ia~ 292 (294)
T COG2524 237 SDYMRK------------NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG-KPVGIITRTDILTRIAG 292 (294)
T ss_pred HHHhcc------------CCceEcCchhHHHHHHHHHhcCcceEEEEccCC-cEEEEEehHHHHHHhhc
Confidence 999996 999999999999999999999999999999988 99999999999998874
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.71 E-value=1.1e-16 Score=144.54 Aligned_cols=126 Identities=25% Similarity=0.415 Sum_probs=116.1
Q ss_pred cCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccc
Q 013669 191 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII 270 (438)
Q Consensus 191 ~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l 270 (438)
-......+|.++|+ .+++++.+++|+.+|..+|.++++++.||+|+ ++++|++|.+|+...+.++.
T Consensus 166 m~siPk~~V~~~~s----~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~-------- 231 (294)
T COG2524 166 MVSIPKEKVKNLMS----KKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGN-------- 231 (294)
T ss_pred eeecCcchhhhhcc----CCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCC--------
Confidence 34455678999999 88999999999999999999999999999997 49999999999999998873
Q ss_pred ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
...++++ +|.+ +++++.+++.+.+|+++|..++++++.|+|. +|+++|+||+.|++..+.
T Consensus 232 ~~~kV~~----~M~k-~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSD----YMRK-NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHH----Hhcc-CCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhh
Confidence 5678999 8997 9999999999999999999999999999998 899999999999998765
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.65 E-value=3.4e-16 Score=143.75 Aligned_cols=128 Identities=24% Similarity=0.438 Sum_probs=112.0
Q ss_pred ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc---ccccC
Q 013669 271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS---NFRQL 347 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~---~~~~~ 347 (438)
.+.+..+ +|++ ++++++.++++.+|.++|.+++++.+||+|+ +.+++|+++.+|+.+.... ..+. .+...
T Consensus 243 ~~Ltcad----IMSr-dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~-~p~qrlr~~~~~ 315 (382)
T COG3448 243 GELTCAD----IMSR-DVVTVSTDTSIDHARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARP-SPFQRLRFLRPP 315 (382)
T ss_pred ccccHHH----hcCc-cceecCCcCChHHHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCc-chHHHhhccCCC
Confidence 4557777 8997 9999999999999999999999999999998 8999999999999875322 2222 23445
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
+++.+|++ ++.++.++++..+.+-++.+.+.|++||+|++| +++||||++|++..+..
T Consensus 316 ~vk~imt~------------~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g-~lvGIvsQtDliaal~r 373 (382)
T COG3448 316 TVKGIMTT------------PVVTVRPDTPAVELVPRLADEGLHALPVLDAAG-KLVGIVSQTDLIAALYR 373 (382)
T ss_pred cccccccC------------cceeecCCCcHHHHHHHhhcCCcceeeEEcCCC-cEEEEeeHHHHHHHHHH
Confidence 78888885 899999999999999999999999999999998 99999999999999875
No 5
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.63 E-value=4.3e-15 Score=124.64 Aligned_cols=137 Identities=27% Similarity=0.457 Sum_probs=113.3
Q ss_pred eHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHH
Q 013669 250 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329 (438)
Q Consensus 250 t~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~ 329 (438)
|.+.|++++.++.+ ...+... +|+. +++.|.+++++.++.++|.+++++.+||++ +++++|-||..
T Consensus 49 t~k~Il~aL~e~e~-------~~ita~~----iM~s-pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~--~~k~VGsItE~ 114 (187)
T COG3620 49 TVKRILEALEEAEK-------TRITAKT----IMHS-PVVSVSPDDSISDVVNLMRDKGISQLPVIE--EDKVVGSITEN 114 (187)
T ss_pred HHHHHHHHHHHhhc-------ceEeHhh----hccC-CeeEECchhhHHHHHHHHHHcCCccCceee--CCeeeeeecHH
Confidence 44666777776642 2234455 7886 999999999999999999999999999999 69999999999
Q ss_pred HHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeH
Q 013669 330 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL 409 (438)
Q Consensus 330 Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~ 409 (438)
|+.+.+.+. ...+.+..|+++|.. +..++++++++..+-+++..+. .+.|+ ++| +++||||+
T Consensus 115 ~iv~~~le~--~e~i~~~~vr~vM~e------------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G-~~vGIITk 176 (187)
T COG3620 115 DIVRALLEG--MESIRSLRVREVMGE------------PFPTVSPDESLNVISQLLEEHP--AVLVV-ENG-KVVGIITK 176 (187)
T ss_pred HHHHHHhcc--ccchhhhhHHHHhcC------------CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCC-ceEEEEeH
Confidence 999998653 245678899999985 8899999999999888888764 56666 555 99999999
Q ss_pred HHHHHHhhc
Q 013669 410 RDVISCFIF 418 (438)
Q Consensus 410 ~DIl~~l~~ 418 (438)
.||++.+..
T Consensus 177 ~DI~k~~~~ 185 (187)
T COG3620 177 ADIMKLLAG 185 (187)
T ss_pred HHHHHHHhc
Confidence 999998764
No 6
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.60 E-value=2.6e-14 Score=150.28 Aligned_cols=193 Identities=12% Similarity=0.162 Sum_probs=145.5
Q ss_pred CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC--
Q 013669 197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP-- 274 (438)
Q Consensus 197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~-- 274 (438)
.+|+++|. .+++++++++++.+|+++|.+++++.+||+|++ |+++|++|..|+.+.+........+... ..+
T Consensus 68 ~~V~dim~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~-~~t~~ 141 (546)
T PRK14869 68 PQVRDLEI----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKS-PTSLE 141 (546)
T ss_pred CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhc-CCCHH
Confidence 46999998 789999999999999999999999999999977 8999999999999876543211001100 000
Q ss_pred --------------------cccccc---------CCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC-------
Q 013669 275 --------------------ISDLGL---------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ------- 318 (438)
Q Consensus 275 --------------------v~~l~l---------~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~------- 318 (438)
...+-+ ..+.+..++.+.... +....+.+.++++++|+...
T Consensus 142 ~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~ 218 (546)
T PRK14869 142 NIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVL 218 (546)
T ss_pred HHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence 000000 023333455554333 33446788999999888641
Q ss_pred ----CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc-ccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEE
Q 013669 319 ----QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN-AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRI 393 (438)
Q Consensus 319 ----~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~-~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l 393 (438)
+..+.++.|..|.......-. ...+|.++|+ . +++++++++++.++.+.|.+++++++
T Consensus 219 ~la~~~~i~ii~t~~dt~~t~~~l~-----~~~~V~~iM~~~------------~~~~~~~~~~~~~~~~~m~~~~~~~~ 281 (546)
T PRK14869 219 ELAKENGVTVISTPYDTFTTARLIN-----QSIPVSYIMTTE------------DLVTFSKDDYLEDVKEVMLKSRYRSY 281 (546)
T ss_pred HHHHhCCCeEEEecccHHHHHHHhh-----cCCCHHHhccCC------------CcEEECCCCcHHHHHHHHHhcCCCce
Confidence 225889999999887754311 3678999998 5 88999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeHHHHHHHh
Q 013669 394 YVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 394 ~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
||+|++| +++|+||.+|+++..
T Consensus 282 PVvd~~g-~lvGiit~~dl~~~~ 303 (546)
T PRK14869 282 PVVDEDG-KVVGVISRYHLLSPV 303 (546)
T ss_pred EEEcCCC-CEEEEEEHHHhhccc
Confidence 9999988 999999999999854
No 7
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=3.4e-14 Score=117.02 Aligned_cols=109 Identities=18% Similarity=0.340 Sum_probs=95.3
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+.+.+.++|+++ +++++|+++..|+..... . .....++.++|..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~--~---~~~~~~v~~~~~~----------- 64 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP--N---DYETLKVCEVYIV----------- 64 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc--c---cccccChhheeec-----------
Confidence 4678899999999999999999999999997 789999999999987421 1 1123578899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.+|+++|.+++.+++||+|++| +++|+||.+|+++
T Consensus 65 -~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~-~~~Giit~~di~~ 110 (111)
T cd04603 65 -PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEG-KLVGTIYERELLR 110 (111)
T ss_pred -CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-eEEEEEEhHHhhc
Confidence 788999999999999999999999999999887 9999999999986
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=2.8e-14 Score=115.03 Aligned_cols=95 Identities=19% Similarity=0.341 Sum_probs=85.8
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
+++++++++++.++.+.|.+++++++||+|+++|+++|++|..|+...+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 57899999999999999999999999999962479999999999976421
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~-g~~lvGvIT~~DIl~ 414 (438)
++++.+++++.+|+++|.+++++++||+|++ | +++|+||.+||++
T Consensus 52 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~-~~~giit~~d~~~ 97 (98)
T cd04618 52 --LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTG-TGLYILTSRRILK 97 (98)
T ss_pred --eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCC-CceEEeehhhhhc
Confidence 4679999999999999999999999999987 6 9999999999985
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=4.9e-14 Score=116.56 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=97.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
.+.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|++..+..... .....++.++|..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~--~~~~~~v~~~~~~----------- 67 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGG--PGCTAPVENVMTR----------- 67 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCC--CcccCCHHHHhcC-----------
Confidence 4678899999999999999999999999997 8899999999999876542111 1234679999975
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
+++++.+++++.++++.|.+++.+++||+|++| +++|+||++|+++
T Consensus 68 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~~Gvi~~~dl~~ 113 (114)
T cd04619 68 -AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENA-RPLGVLNARDALK 113 (114)
T ss_pred -CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEhHhhcc
Confidence 889999999999999999999999999999887 9999999999975
No 10
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-14 Score=132.80 Aligned_cols=131 Identities=21% Similarity=0.367 Sum_probs=113.3
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
+...++.+||+ +.++++.+++++.+|..+|.+++++.+||+|++ .+++||+|++|+++...... ...+..+...
T Consensus 242 ~~~LtcadIMS----rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~ 315 (382)
T COG3448 242 MGELTCADIMS----RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARPSP-FQRLRFLRPP 315 (382)
T ss_pred hccccHHHhcC----ccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhccCcch-HHHhhccCCC
Confidence 34467899999 889999999999999999999999999999988 79999999999987443211 2222334566
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
+++. +|++ ++.++.++++..+.+-.+.+.+.+++||+|. .|+++||||..|++..+.
T Consensus 316 ~vk~----imt~-~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 316 TVKG----IMTT-PVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALY 372 (382)
T ss_pred cccc----cccC-cceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHH
Confidence 7788 8997 8999999999999999999999999999998 999999999999998865
No 11
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.56 E-value=7.6e-14 Score=134.49 Aligned_cols=132 Identities=17% Similarity=0.325 Sum_probs=112.9
Q ss_pred ccCCccccccCCCCCC-CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 271 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~-~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
...++++ +|+++ +++++..++++.++++.+.+++++++||+++..++++|+++.+|++..+.... ...++
T Consensus 65 ~~~~V~d----iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-----~~~~l 135 (292)
T PRK15094 65 ADQRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-----EAFSM 135 (292)
T ss_pred CCCEEeE----EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-----CcCCH
Confidence 5678999 89874 58999999999999999999999999999862378999999999987643211 12357
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 425 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~ 425 (438)
.++|. +++++.+++++.++++.|.+++.+.++|+|+.| .++|+||+.||++.+.++..+.++
T Consensus 136 ~~l~r-------------~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G-~viGiVTleDIle~ivGei~de~d 197 (292)
T PRK15094 136 DKVLR-------------QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGEIEDEYD 197 (292)
T ss_pred HHHcC-------------CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC-CEEEEeEHHHHHHHHhCCCccccc
Confidence 88886 567999999999999999999999999999998 899999999999999987665554
No 12
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.3e-14 Score=117.43 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=95.0
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++++++||+++ +|+++|+++.+|++.++..... . ....++.+++... ....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~-~-~~~~~~~~~~~~~------~~~~ 72 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAY-N-NLDLTVGEALERR------SQDF 72 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcc-c-cccCCHHHHHhhc------ccCC
Confidence 5788999999999999999999999999987 8999999999999986543211 1 1122344443210 0011
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
.++.++.+++++.++++.|.+++++++||+|++| +++|+||++|++++
T Consensus 73 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~~~Givt~~di~~~ 120 (120)
T cd04641 73 EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENK-RVEGIISLSDILQF 120 (120)
T ss_pred CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCC-CEEEEEEHHHhhcC
Confidence 3678999999999999999999999999999887 99999999999863
No 13
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=3e-13 Score=111.71 Aligned_cols=111 Identities=23% Similarity=0.388 Sum_probs=96.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
++.++.+++++.++++.|.+++.+.+||+++ + ++++|+++..|++..+..... .....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~~G~v~~~dl~~~~~~~~~--~~~~~~v~~~~~~---------- 68 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR-RESDAYGIVTMRDILKKVVAEGR--DPDRVNVYEIMTK---------- 68 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CCCcEEEEEehHHHHHHHHhCCC--CCCccCHHHHhcC----------
Confidence 5788999999999999999999999999997 6 899999999999886543211 1234579999974
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++++++++.++++.|.+++.+++||+|+ | +++|+||..||++
T Consensus 69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~Gvi~~~dl~~ 113 (114)
T cd04630 69 --PLISVSPDMDIKYCARLMERTNIRRAPVVEN-N-ELIGIISLTDIFL 113 (114)
T ss_pred --CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999998 6 9999999999986
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=3e-13 Score=112.54 Aligned_cols=114 Identities=20% Similarity=0.294 Sum_probs=96.9
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++..++||+|+ +++++|+++..|++....... .+...++.++|.. .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~----------~ 67 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGA---DLQKVPVGVIMTR----------M 67 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCC---CccCCCHHHHhCC----------C
Confidence 5788999999999999999999999999997 789999999999988764211 1235578888862 0
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC--CeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE--AEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g--~~lvGvIT~~DIl~ 414 (438)
.++.++++++++.+++++|.+++++++||+|+++ |+++|+||++||++
T Consensus 68 ~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 68 PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 2578999999999999999999999999999872 39999999999875
No 15
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=3e-13 Score=111.41 Aligned_cols=110 Identities=28% Similarity=0.460 Sum_probs=96.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
+++++.+++++.++.+.|.+.+...++|+++ +++++|+++.+|++..+.+... ...++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----~~~~v~~~~~~----------- 66 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----LDDPVSEVMNR----------- 66 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----cCCCHHHhhcC-----------
Confidence 4677899999999999999999999999987 7999999999999876543221 13478999974
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+++||+|++| +++|+||.+||+.
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~ 112 (113)
T cd04607 67 -NPITAKVGSSREEILALMRERSIRHLPILDEEG-RVVGLATLDDLLS 112 (113)
T ss_pred -CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEhHHhcc
Confidence 788999999999999999999999999999887 9999999999974
No 16
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2.4e-13 Score=113.79 Aligned_cols=114 Identities=26% Similarity=0.467 Sum_probs=97.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT 359 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-------~~~~~~v~~~m~~~~~~ 359 (438)
++.++.+++++.++.+.|.+.+++++||+++ +|+++|+++..|++..+....... .....++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 77 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP---- 77 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence 6788999999999999999999999999987 799999999999987764322100 0124468888874
Q ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
+++++.+++++.++++.|.+.+.+++||+|++| +++|+||..|+++
T Consensus 78 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvit~~di~~ 123 (124)
T cd04600 78 --------PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDR-RLVGIVTQTDLIA 123 (124)
T ss_pred --------CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCC-CEEEEEEhHHhhc
Confidence 789999999999999999999999999999887 9999999999986
No 17
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.52 E-value=2.6e-13 Score=136.97 Aligned_cols=130 Identities=18% Similarity=0.318 Sum_probs=113.1
Q ss_pred ccCCccccccCCCCCC-CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 271 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~-~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
.+.++++ +|+++ ++++++.++++.++++.|.+++++++||++++.++++|+++.+|++..+.. ...++
T Consensus 189 ~~~~v~d----iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~l 257 (408)
T TIGR03520 189 GNTDTKQ----VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------KNFDW 257 (408)
T ss_pred CCCEeee----eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------CCCCH
Confidence 5678999 89873 689999999999999999999999999998644799999999999876432 12357
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 425 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~ 425 (438)
.++|+ ++.++++++++.++++.|.+++.|..+|+|+.| .++|+||..||++.+.+|..+.++
T Consensus 258 ~~~~~-------------~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G-~~~GiVT~eDileeivgei~de~d 319 (408)
T TIGR03520 258 QSLLR-------------EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG-GTSGLVTLEDIIEEIVGDISDEFD 319 (408)
T ss_pred HHHcC-------------CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC-CEEEEEEHHHHHHHHhCCCCCcCC
Confidence 78876 789999999999999999999999999999998 999999999999999987655443
No 18
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.52 E-value=9.9e-14 Score=116.52 Aligned_cols=134 Identities=24% Similarity=0.388 Sum_probs=113.6
Q ss_pred chhhhhhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 013669 182 EDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 261 (438)
Q Consensus 182 ~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~ 261 (438)
..+++.+.+.+. ...+++.+|+ +|++++.|++++.+++++|.+++++.+||++. ++++|-||..+|.+.+.+.
T Consensus 51 k~Il~aL~e~e~-~~ita~~iM~----spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 51 KRILEALEEAEK-TRITAKTIMH----SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEG 123 (187)
T ss_pred HHHHHHHHHhhc-ceEeHhhhcc----CCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhcc
Confidence 456666665554 5577899999 89999999999999999999999999999997 6999999999999998765
Q ss_pred CCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 262 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 262 ~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
. +++....+++ +|.. ++.++++++++..+..++..++ ++.|++ +|+++|+||+.|++.++.
T Consensus 124 ~-----e~i~~~~vr~----vM~e-~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 124 M-----ESIRSLRVRE----VMGE-PFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLA 184 (187)
T ss_pred c-----cchhhhhHHH----HhcC-CCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHh
Confidence 2 3456778888 8986 8999999999988887777654 678886 799999999999998865
No 19
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.51 E-value=1.3e-13 Score=116.16 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=96.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++++++||+|+ +++++|+++..|++..+..... ....++.++|..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~---~~~~~v~~im~~----------- 67 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKV---QPSDPVSKALYK----------- 67 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhcc---CCCCcHHHHhhc-----------
Confidence 6788999999999999999999999999997 7899999999999876543221 135689999985
Q ss_pred CCCeEeCCCCCHHHHHHHHH---------hCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 367 NPPITCKLESTLGSVIHSLA---------SKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~---------~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
++.++.+++++.++.++|. +.+.+++||+|++| +++|+||.+||++++
T Consensus 68 -~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~Givt~~Dl~~~~ 124 (124)
T cd04608 68 -QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQE-KPIGIVTKIDLLSYI 124 (124)
T ss_pred -cceecCCCCCHHHHHhhcccCCceEEEecccccccccccccc-ceEEEEehhHhhhhC
Confidence 8899999999999999653 34678889999887 999999999999864
No 20
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.50 E-value=5.7e-13 Score=110.13 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=96.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++.+.|.+.+++.+||+++ +|+++|+++..|++..+.+... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~----------- 66 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEA---GEPSAVDEVATP----------- 66 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccc---cccccHHHhccC-----------
Confidence 4678899999999999999999999999997 7999999999999987643221 123458888874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--CCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE--EAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~--g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.+++++|.+++.+++||+|++ | +++|+||.+||++
T Consensus 67 -~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~-~~~Gvit~~di~~ 114 (115)
T cd04593 67 -PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPG-QVLGLLTRENVLL 114 (115)
T ss_pred -CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCC-eEEEEEEhHHhhc
Confidence 78999999999999999999999999999987 6 9999999999986
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=7.8e-13 Score=108.54 Aligned_cols=111 Identities=27% Similarity=0.432 Sum_probs=96.3
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.++.++.++++.|.+++++.+||+++ +++++|+++..|++..+..... .....++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~--~~~~~~~~~~~~~----------- 67 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGA--SALDTPVSEIMTR----------- 67 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCC--CccccCHHHhcCC-----------
Confidence 5778899999999999999999999999997 7899999999999987653211 1124578999874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+.+.+++||+++ | +++|+||..||++
T Consensus 68 -~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~ 112 (113)
T cd04623 68 -NVITVTPDDTVDEAMALMTERRFRHLPVVDG-G-KLVGIVSIGDVVK 112 (113)
T ss_pred -CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999998 6 9999999999986
No 22
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=4.6e-13 Score=111.70 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=92.4
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc-CCccccccCCCCCCCc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS-QPISDLGLPFMSSDEV 288 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~-~~v~~l~l~~m~~~~v 288 (438)
+++++++++++.+|++.|.+++++++||+|++ ++++|+++..|+++++...........+.. ..... +|.. ++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~ 75 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRS----QDFE-GV 75 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcc----cCCC-CC
Confidence 57899999999999999999999999999976 899999999999987643311000000000 01112 3443 67
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+||.+|++.
T Consensus 76 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~ 119 (120)
T cd04641 76 RTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ 119 (120)
T ss_pred eEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999997 689999999999874
No 23
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=5.4e-13 Score=111.83 Aligned_cols=115 Identities=29% Similarity=0.400 Sum_probs=98.0
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc--------ccccCcHHHHhcccC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS--------NFRQLTVRDFMNAVV 357 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~--------~~~~~~v~~~m~~~~ 357 (438)
++.++.++.++.+++++|.+.+...+||+++ + |+++|+++..|++..+.+...+. .....++.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~-~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE-GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR-- 78 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC-CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence 5778899999999999999999999999997 5 99999999999998775432211 1123578888864
Q ss_pred CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 358 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 358 ~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++.++++++++.++++.|.+.+.+++||+|++| +++|+||..||+++
T Consensus 79 ----------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~-~~~Gvit~~di~~~ 125 (125)
T cd04631 79 ----------NVITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDLLKA 125 (125)
T ss_pred ----------CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-cEEEEEEHHHhhcC
Confidence 789999999999999999999999999999877 99999999999863
No 24
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=2.6e-13 Score=114.32 Aligned_cols=122 Identities=43% Similarity=0.687 Sum_probs=92.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh---cccCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM---NAVVPTTPDS 363 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m---~~~~~~~~~~ 363 (438)
+++++.+++++.++++.|.+++++.+||+|+ +|+++|+++..|++......... ...+...++ ..... . ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~ 75 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDL---LLYRTITFKELSEKFTD-S-DG 75 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchh---hcccchhhhhhhhhccc-c-cc
Confidence 5788999999999999999999999999997 79999999999998876432211 010111000 00000 0 00
Q ss_pred CCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 364 GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 364 ~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
....++.++.+++++.+|+++|.+++.+++||+|+++ +++|+||.+||+++
T Consensus 76 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dil~~ 126 (126)
T cd04642 76 VKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEG-KPIGVITLTDIISI 126 (126)
T ss_pred cccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCC-CEEEEEEHHHHhcC
Confidence 0124789999999999999999999999999999887 99999999999864
No 25
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=5.7e-13 Score=111.21 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=98.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT 360 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~------~~~~~~v~~~m~~~~~~~ 360 (438)
++.++.+++++.++.+.|.+.+++.+||+++ +|+++|+++..|++..+....... .....++.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC-----
Confidence 5788999999999999999999999999997 799999999999988764321100 1135678899874
Q ss_pred CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++.++.+++++.++++.|.+.+.+++||+|++| +++|+||..|++++
T Consensus 76 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dl~~~ 122 (122)
T cd04803 76 -------DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKG-TLVGIITRSDFLRL 122 (122)
T ss_pred -------CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCC-CEEEEEEHHHhhcC
Confidence 789999999999999999999999999999887 99999999999863
No 26
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=6.7e-13 Score=109.20 Aligned_cols=111 Identities=23% Similarity=0.394 Sum_probs=96.8
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++..+.+++++.++++.|.+.+.+.+||+|+ +++++|+++..|++..+.+... +...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~i~~~~~~----------- 66 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEE---LKDAKVREVMNS----------- 66 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhh---hcCCcHHHhccC-----------
Confidence 3677899999999999999999999999997 7899999999999876443322 234578899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++..++++.++++.|.+++.+++||+|++| +++|+||..||++
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvvt~~dl~~ 112 (113)
T cd04615 67 -PVITIDANDSIAKARWLMSNNNISRLPVLDDKG-KVGGIVTEDDILR 112 (113)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCCeeeEECCCC-eEEEEEEHHHhhc
Confidence 789999999999999999999999999999887 9999999999975
No 27
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4e-13 Score=108.27 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=84.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++++++++++.+|.+.|.+++++++||+|+++++++|++|..|+.+.+ . +.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------~---~~ 53 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------R---LV 53 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------e---eE
Confidence 4789999999999999999999999999997437899999999986521 0 67
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++++++||+++ + |+++|++|.+|++.
T Consensus 54 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~ 97 (98)
T cd04618 54 SIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK 97 (98)
T ss_pred EeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence 8899999999999999999999999997 5 89999999999864
No 28
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.49 E-value=9.3e-14 Score=146.13 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=173.5
Q ss_pred CCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccchh
Q 013669 57 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA 136 (438)
Q Consensus 57 ~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (438)
++++.+|+++|.+++++.+||+|++ ++++|+|+..|+..++++..+....+
T Consensus 84 ~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~~--------------------- 134 (546)
T PRK14869 84 DTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEILS--------------------- 134 (546)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhhh---------------------
Confidence 8899999999999999999999976 49999999999999887754311110
Q ss_pred hhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEEeC
Q 013669 137 LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT 216 (438)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~ 216 (438)
..+..+..+..+..|..+.|+.......|+ ..+..... ..+...+. ...++.+..
T Consensus 135 -----~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~--~~v~a~~~---------------~~~~~~~~---~~~lvi~gd 189 (546)
T PRK14869 135 -----KSPTSLENIIRTLDGEVLVGAEEDKVEEGK--VVVAAMAP---------------ESLLERIE---EGDIVIVGD 189 (546)
T ss_pred -----hcCCCHHHHHHhcCcEEEecCccccccccc--EEEEEcCH---------------HHHHHhcc---CCCEEEEcC
Confidence 001122333322222222221111000000 00000000 01112222 123444433
Q ss_pred CCCHHHHHHHHHhCCCCEEEEEcCC-----------CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCC-
Q 013669 217 DDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS- 284 (438)
Q Consensus 217 ~~sl~~al~~m~~~~i~~lpVvd~~-----------~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~- 284 (438)
... ....+.+.++++++|+... ...+.++.|..|......... ...++++ +|+
T Consensus 190 r~d---~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~--------~~~~V~~----iM~~ 254 (546)
T PRK14869 190 RED---IQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLIN--------QSIPVSY----IMTT 254 (546)
T ss_pred cHH---HHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhh--------cCCCHHH----hccC
Confidence 333 2335678889999888653 236889999999987765432 3568899 898
Q ss_pred CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc------cccc-cc---cCcHHHHhc
Q 013669 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------LFSN-FR---QLTVRDFMN 354 (438)
Q Consensus 285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~------~~~~-~~---~~~v~~~m~ 354 (438)
. +++++++++++.++.+.|.+++++.+||+|+ +|+++|++|.+|++.....+- .... .. ...+.+++.
T Consensus 255 ~-~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiD 332 (546)
T PRK14869 255 E-DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIID 332 (546)
T ss_pred C-CcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEec
Confidence 5 8999999999999999999999999999997 899999999999988643210 0000 00 000000110
Q ss_pred c-cCCCCCCCCCCCCCeEe---CCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 355 A-VVPTTPDSGKVNPPITC---KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 355 ~-~~~~~~~~~~~~~~~~v---~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
. ..++. ....++.+ ....+...+.++|.+.++...|++.. . .+.||+|-++.+++
T Consensus 333 HH~~~~~----~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~-ll~gIlsDT~~f~~ 391 (546)
T PRK14869 333 HHRLGDI----QTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-L-LLAAILSDTLLFKS 391 (546)
T ss_pred CCccCCC----CCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-H-HHHHHHHHhcCccC
Confidence 0 00000 11233333 44667778899999999887777754 2 68888888887764
No 29
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.2e-12 Score=107.14 Aligned_cols=107 Identities=29% Similarity=0.444 Sum_probs=95.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++++.+||+++ +|+++|+++..|++..+.... .++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~-------~~~~~~~~~----------- 63 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK-------KSVEDIMTR----------- 63 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc-------cCHHHhcCC-----------
Confidence 6788999999999999999999999999997 799999999999987654321 248888864
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+.+||++++| +++|+||+.||++
T Consensus 64 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~v~~~di~~ 109 (110)
T cd04605 64 -NVITATPDEPIDVAARKMERHNISALPVVDAEN-RVIGIITSEDISK 109 (110)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCC-cEEEEEEHHHhhh
Confidence 788999999999999999999999999999887 9999999999975
No 30
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=4.4e-13 Score=110.64 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=94.0
Q ss_pred CceEEcCCCcHHHHHHHHHHcC-CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
++.++++++++.++++.|.+++ .+.+||+|+ +++++|+++..|++...... ....++.++|...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~-----~~~~~v~~~~~~~--------- 66 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQ-----WAQTTVIQVMTPA--------- 66 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhh-----ccccchhhhhccc---------
Confidence 5778999999999999997775 889999987 79999999999998875321 1245788888631
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.++.++.+++++.++++.|.+++.+++||+|++| +++|+||.+||++
T Consensus 67 -~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~-~~~Gvl~~~di~~ 113 (114)
T cd04801 67 -AKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSG-QVIGLITEADLLR 113 (114)
T ss_pred -ccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCC-cEEEEEeccceec
Confidence 1467899999999999999999999999999887 9999999999875
No 31
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=4.8e-13 Score=112.11 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=90.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc---cc---ccCcHHHHhcccCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS---NF---RQLTVRDFMNAVVPT 359 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~---~~---~~~~v~~~m~~~~~~ 359 (438)
++.++.+++++.++++.|.+++++++||+|+ + ++++|+++..|++..+....... .. ....+.++|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE-ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGT----- 75 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC-CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCc-----
Confidence 5788999999999999999999999999997 5 89999999999987653211000 00 0011112333
Q ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013669 360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 413 (438)
Q Consensus 360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl 413 (438)
.++.++++++++.+|++.|.+++.+++||+|+++ +++|+||++||-
T Consensus 76 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~vGiit~~di~ 121 (123)
T cd04627 76 -------SDVISINGDQPLIDALHLMHNEGISSVAVVDNQG-NLIGNISVTDVR 121 (123)
T ss_pred -------CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCC-cEEEEEeHHHhh
Confidence 3788999999999999999999999999999987 999999999973
No 32
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=9.1e-13 Score=112.71 Aligned_cols=113 Identities=22% Similarity=0.345 Sum_probs=96.3
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--------------------cccc
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--------------------NFRQ 346 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~--------------------~~~~ 346 (438)
++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++..|++..+....... ....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 5778999999999999999999999999997 799999999999998764221100 0124
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.++.++|.. ++.++.+++++.++++.|.+++.+++||+++ | +++|+||.+||++
T Consensus 81 ~~v~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~-~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTE------------EIITVSPNDDVVDAAKLMLEANISGLPVVDN-D-NIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-C-EEEEEEEHHHHhh
Confidence 578899874 7889999999999999999999999999987 6 9999999999986
No 33
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.3e-13 Score=108.61 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=96.0
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+.+...+||+++ +++++|+++..|+...+.... ...++.++|..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~----------- 64 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGG-----PDAPVRGVMRR----------- 64 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcC-----CCCcHHHHhcC-----------
Confidence 5678899999999999999889999999997 789999999999988764321 23478898874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++..++||+|++| +++|+||.+||.+
T Consensus 65 -~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~ 110 (111)
T cd04639 65 -DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSG-RLVGLVTLENVGE 110 (111)
T ss_pred -CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCC-CEEEEEEHHHhhc
Confidence 789999999999999999999999999999887 9999999999975
No 34
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.48 E-value=2.5e-13 Score=135.49 Aligned_cols=123 Identities=18% Similarity=0.348 Sum_probs=108.1
Q ss_pred CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHH
Q 013669 273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF 352 (438)
Q Consensus 273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~ 352 (438)
..+.+ +++. ++++|++..++.+|..+|.+.|++++.++++ ++...||||.+|+......... ....+|.++
T Consensus 149 trv~~----~~~~-~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~---~~~~~V~ev 219 (610)
T COG2905 149 TRVGE----VKTL-PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGR---SKTQKVSEV 219 (610)
T ss_pred HHHHH----HhcC-CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCC---Ccccchhhh
Confidence 35555 4565 8999999999999999999999999999988 8999999999999887653222 246799999
Q ss_pred hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 353 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 353 m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
|+. |+++++.++.+.+|+-+|.+++++|+||.++ |+++|+||.+||++.+..
T Consensus 220 mT~------------p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 220 MTS------------PVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred hcc------------CceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCC
Confidence 995 9999999999999999999999999999876 499999999999998875
No 35
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.1e-12 Score=107.55 Aligned_cols=109 Identities=25% Similarity=0.370 Sum_probs=95.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++++++++.++++.|.+++.+++||+++ +|+++|+++..|++.+..... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~~~~v~~~~~~----------- 65 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FLEKKVFNIVSQ----------- 65 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cccCcHHHHhcC-----------
Confidence 5778999999999999999999999999997 799999999999987643211 124578898874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+++||+|+ | +++|+||..||+.
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~di~~ 110 (111)
T cd04626 66 -DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-N-KLIGVVRTKDILD 110 (111)
T ss_pred -CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEhHHhcc
Confidence 7899999999999999999999999999998 6 9999999999974
No 36
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=8.6e-13 Score=107.83 Aligned_cols=105 Identities=22% Similarity=0.382 Sum_probs=94.7
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+++..|++... ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~---------~~~~v~~~~~~----------- 61 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD---------PDTTIEKVMTK----------- 61 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc---------ccccHHHHhcC-----------
Confidence 6788999999999999999999999999997 89999999999997531 13478999974
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+.+||+|++| +++|+||..|+++
T Consensus 62 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~di~~ 107 (108)
T cd04596 62 -NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNK-KLLGIISRQDVLK 107 (108)
T ss_pred -CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCC-CEEEEEEHHHhhc
Confidence 789999999999999999999999999999887 9999999999985
No 37
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=9.7e-13 Score=108.68 Aligned_cols=113 Identities=25% Similarity=0.369 Sum_probs=94.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--ccccCcHHHHhcccCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--NFRQLTVRDFMNAVVPTTPDSG 364 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~--~~~~~~v~~~m~~~~~~~~~~~ 364 (438)
+++++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|++..+....... .+...++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--------- 71 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--------- 71 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC---------
Confidence 5788999999999999999999999999997 789999999999988764321110 0114578898874
Q ss_pred CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++.++.+++++.++++.|.+.+ .+||+|++| +++|+||..|++++
T Consensus 72 ---~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~-~~~Gvit~~dil~~ 116 (116)
T cd04643 72 ---DVPVIIDDADIEEILHLLIDQP--FLPVVDDDG-IFIGIITRREILKA 116 (116)
T ss_pred ---CCceecCCCCHHHHHHHHhcCC--ceeEEeCCC-eEEEEEEHHHhhcC
Confidence 7899999999999999998865 599999887 99999999999863
No 38
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.47 E-value=5.5e-13 Score=131.10 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=106.2
Q ss_pred cCCccccccCCCCCCC--ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 272 SQPISDLGLPFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 272 ~~~v~~l~l~~m~~~~--vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
..++++ +|.+ + +.++++++++.++.+.|.+.+...+||+|+ +|+++|+|+..|+...+..... ...++
T Consensus 196 ~~~V~~----im~~-~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~----~~~~v 265 (321)
T PRK11543 196 LNKVHH----LMRR-DDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGA----LTTPV 265 (321)
T ss_pred HhHHHH----Hhcc-CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCC----cCCcH
Confidence 457778 7876 5 899999999999999999999999999997 8999999999999887643221 24579
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
.++|.. ++.++.+++++.+|++.|.++++.++||||++| +++|+||++||+++
T Consensus 266 ~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGvIt~~di~~~ 318 (321)
T PRK11543 266 NEAMTR------------GGTTLQAQSRAIDAKEILMKRKITAAPVVDENG-KLTGAINLQDFYQA 318 (321)
T ss_pred HHhcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHhc
Confidence 999985 789999999999999999999999999999888 99999999999974
No 39
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=9.3e-13 Score=108.87 Aligned_cols=111 Identities=19% Similarity=0.419 Sum_probs=95.6
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 290 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~ 290 (438)
+..+.+++++.+|++.|.+++...+||+|++ |+++|++|..|+.+.+...... ....++.+ +|.. ++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~-----~~~~~v~~----~~~~-~~~~ 71 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGP-----GCTAPVEN----VMTR-AVVS 71 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----cccCCHHH----HhcC-CCee
Confidence 6788999999999999999999999999987 8999999999998866431111 13456777 6766 7899
Q ss_pred EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+.+++++.++++.|.+++...+||+++ +|+++|+|+.+|++.
T Consensus 72 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 72 CRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred ECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 999999999999999999999999997 789999999999864
No 40
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.47 E-value=9.8e-13 Score=134.33 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=105.2
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM 353 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m 353 (438)
++.+ +|.+ +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+... . ...++.++|
T Consensus 90 Kv~~----iMi~-~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~--~-------~~~~V~diM 154 (479)
T PRK07807 90 KSRD----LVFD-TPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV--D-------RFTQVRDVM 154 (479)
T ss_pred cccc----cccc-CCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC--c-------cCCCHHHhc
Confidence 4456 6766 8999999999999999999999999999997 8899999999999543 1 124799999
Q ss_pred cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669 354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~ 420 (438)
.. +++++++++++.+|++.|.+++++++||+|+++ +++|+||.+||++.....|
T Consensus 155 t~------------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-~lvGIIT~~DIl~~~~~~~ 208 (479)
T PRK07807 155 ST------------DLVTLPAGTDPREAFDLLEAARVKLAPVVDADG-RLVGVLTRTGALRATIYTP 208 (479)
T ss_pred cC------------CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhCCc
Confidence 85 899999999999999999999999999999988 9999999999999877643
No 41
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.47 E-value=1.4e-12 Score=106.86 Aligned_cols=108 Identities=21% Similarity=0.485 Sum_probs=94.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
+++++.+++++.++.+.|.+.+.+.+||+++ + ++++|+++..|++....+... ..++.+++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-~~~~~~G~v~~~~l~~~~~~~~~-----~~~~~~~~~----------- 64 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-DLDNIIGVVHVKDLLRALAEGEE-----DLDLRDLLR----------- 64 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-CCceEEEEEEHHHHHHHHHcCCC-----cCCHHHHhc-----------
Confidence 5788999999999999999999999999997 6 899999999999987653211 145777664
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+++||+|++| +++|+||++|+++
T Consensus 65 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~ 110 (111)
T cd04590 65 --PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYG-GTAGLVTLEDILE 110 (111)
T ss_pred --CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCC-CEEEEeEHHHhhc
Confidence 678999999999999999999999999999988 9999999999975
No 42
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7.7e-13 Score=108.87 Aligned_cols=108 Identities=11% Similarity=0.226 Sum_probs=93.0
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 290 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~ 290 (438)
++++.+++++.+|++.|.+++.+.+||+|++ ++++|+++..|+.+..... +...++.+ +|.. ++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~--------~~~~~v~~----~~~~-~~~~ 68 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPND--------YETLKVCE----VYIV-PVPI 68 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccc--------ccccChhh----eeec-CCcE
Confidence 6788999999999999999999999999976 8999999999998732111 12346777 6765 7889
Q ss_pred EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+.+++++.+++++|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus 69 v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 69 VYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 999999999999999999999999997 799999999999875
No 43
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=8.4e-13 Score=108.69 Aligned_cols=112 Identities=26% Similarity=0.373 Sum_probs=96.1
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++.+.|.+++.+.+||+++ +++++|+++..|++..+.... +......++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~v~~~~~~----------- 68 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESS-YHCDGVATVRDIMTT----------- 68 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhh-hccCCCccHHHHhcc-----------
Confidence 5778999999999999999999999999997 789999999999987654321 111224578999874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+++||+|+ | +++|+||.+||++
T Consensus 69 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~ 113 (114)
T cd04629 69 -EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-G-KLVGQISRRDVLR 113 (114)
T ss_pred -CceEECCCCcHHHHHHHHHHhCCCccCEEEC-C-EEEEEEEHHHHhc
Confidence 7889999999999999999999999999998 6 9999999999986
No 44
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.5e-12 Score=106.86 Aligned_cols=110 Identities=25% Similarity=0.389 Sum_probs=96.7
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++.+.|.+.+++.+||+++ +++++|+++..|++..+..... ...++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~----~~~~v~~~~~~----------- 65 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGID----LDTPVSEIMTR----------- 65 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCC----CccCHHHhccC-----------
Confidence 5678899999999999999999999999997 7999999999999887654321 24578888874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++..++++.++++.|.+++...+||+|++| +++|++|..|+++
T Consensus 66 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g-~~~Gilt~~dl~~ 111 (112)
T cd04624 66 -DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDLVR 111 (112)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCC-cEEEEEEHHHhcc
Confidence 788999999999999999999999999999887 9999999999975
No 45
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.47 E-value=1.2e-12 Score=106.33 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=92.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.++.++.++++.|.+++.+.++|+++ +|+++|+++..|++.... .++.++|..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~----------~~~~~~~~~----------- 59 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG----------GCCGDHAEP----------- 59 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc----------cchhhhccc-----------
Confidence 5678899999999999999999999999987 799999999999986521 247788864
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++...+||+|+++ +++|+||.+|+++
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~~l~~ 105 (106)
T cd04582 60 -FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDG-RYVGEVTQRSIAD 105 (106)
T ss_pred -CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 668899999999999999999999999999887 9999999999985
No 46
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.3e-12 Score=110.18 Aligned_cols=114 Identities=25% Similarity=0.455 Sum_probs=95.1
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc----------ccccccCcHHHHhccc
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL----------FSNFRQLTVRDFMNAV 356 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~----------~~~~~~~~v~~~m~~~ 356 (438)
++.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+..++..... .......++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS- 79 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence 5678999999999999999999999999997 7999999999999876532110 001223578888874
Q ss_pred CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEe--CCCCeEEEEEeHHHHHH
Q 013669 357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA--GEEAEVVGVITLRDVIS 414 (438)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd--~~g~~lvGvIT~~DIl~ 414 (438)
+++++.+++++.++++.|.+.+.+.+||++ +++ +++|+||.+||++
T Consensus 80 -----------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~-~~~Gvit~~di~~ 127 (128)
T cd04632 80 -----------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDT-KVVGILTKKDVLR 127 (128)
T ss_pred -----------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCC-cEEEEEEhHhhhc
Confidence 789999999999999999999999999985 356 9999999999986
No 47
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.46 E-value=1.3e-12 Score=107.45 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=96.8
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+++..+++.++..... +...++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~---~~~~~v~~~~~~----------- 67 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD---ILTLPVADVMTR----------- 67 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc---cccCCHHHhhcc-----------
Confidence 5677899999999999999888899999997 7899999999999988754221 223479999975
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+.+||+|+++ +++|+||..||++
T Consensus 68 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~iG~it~~di~~ 113 (114)
T cd04604 68 -NPKTIDPDALAAEALELMEENKITALPVVDDNG-RPVGVLHIHDLLR 113 (114)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEEEHHHhhc
Confidence 778999999999999999999999999999877 9999999999986
No 48
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=8.8e-13 Score=129.92 Aligned_cols=122 Identities=20% Similarity=0.360 Sum_probs=103.6
Q ss_pred cCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669 272 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 350 (438)
Q Consensus 272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~ 350 (438)
..++++ +|.+ ++++++++++++.++++.|.+++.+.+||+|+ +|+++|++|.+|+++.+.... .+...++.
T Consensus 201 ~~~V~d----im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~---~~~~~~v~ 272 (326)
T PRK10892 201 LLRVSD----IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI---DLRQASIA 272 (326)
T ss_pred cCcHHH----HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC---CcccCCHH
Confidence 345677 6764 37899999999999999999999888888887 899999999999987654321 12346899
Q ss_pred HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++|.+ +++++.+++++.+|++.|.+++++++||+|+ + +++|+||++||++.
T Consensus 273 ~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~-~lvGiit~~dil~~ 323 (326)
T PRK10892 273 DVMTP------------GGIRVRPGILAVDALNLMQSRHITSVLVADG-D-HLLGVLHMHDLLRA 323 (326)
T ss_pred HhcCC------------CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC-C-EEEEEEEhHHhHhc
Confidence 99985 8899999999999999999999999999974 5 99999999999975
No 49
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.46 E-value=1.6e-12 Score=106.86 Aligned_cols=111 Identities=25% Similarity=0.515 Sum_probs=97.3
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++.+.|.+.+++.+||+++ +++++|+++..|+...+.+... ....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~v~~~~~~----------- 66 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSL---YDLVVASDIMTK----------- 66 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccc---cccEEHHHhccC-----------
Confidence 5788999999999999999999999999997 7899999999999887643222 123579999975
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAG-EEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~-~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+.+.+++||+|+ ++ +++|+||..||+.
T Consensus 67 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~-~~~Gvvt~~di~~ 113 (114)
T cd04613 67 -PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG-KLLGILSRSDLLS 113 (114)
T ss_pred -CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCC-EEEEEEEhHHhhc
Confidence 7899999999999999999999999999998 77 9999999999975
No 50
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.3e-12 Score=108.93 Aligned_cols=114 Identities=19% Similarity=0.371 Sum_probs=96.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT 360 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~------~~~~~~v~~~m~~~~~~~ 360 (438)
+++++.+++++.++++.|.+.+++++||+|+ +|+++|+++..|++.......... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC-----
Confidence 5788999999999999999999999999997 799999999999987532110000 0234578888864
Q ss_pred CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++..++++.++++.|.+++.+++||+|++| +++|++|.+|+++
T Consensus 76 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvit~~dl~~ 121 (122)
T cd04635 76 -------PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKD-QLVGIVDRHDVLK 121 (122)
T ss_pred -------CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCC-cEEEEEEhHHhhc
Confidence 789999999999999999999999999999887 9999999999986
No 51
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.45 E-value=2.3e-12 Score=105.11 Aligned_cols=106 Identities=23% Similarity=0.391 Sum_probs=94.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++..+.+++++.+++..|.+.++.++||+++ +++++|+++..|++..... ..++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~--------~~~v~~~~~~----------- 62 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE--------AKSLEDIMLE----------- 62 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc--------CCcHhHhhcC-----------
Confidence 5778899999999999999999999999997 7899999999999876421 2368888874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.+.++++++++.++++.|.+.+.+++||+|++| +++|+||.+|+++
T Consensus 63 -~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g-~~~Gvit~~~l~~ 108 (109)
T cd04583 63 -DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDG-KLVGLITRSSLVD 108 (109)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCceeeEECCCC-eEEEEEehHHhhc
Confidence 788999999999999999999999999999887 9999999999975
No 52
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.2e-12 Score=105.08 Aligned_cols=94 Identities=18% Similarity=0.366 Sum_probs=85.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
+++++.+++++.++++.|.+++++.+||+|+ +|+++|+++.+|++...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC-------------------------------
Confidence 5788999999999999999999999999997 79999999999997631
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.+.++.+++++.+++++|.+++.+++||+|++| +++|+||.+||++
T Consensus 50 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~-~~~Giit~~di~~ 95 (96)
T cd04614 50 -EVVTATKRTTVSECAQKMKRNRIEQIPIINGND-KLIGLLRDHDLLK 95 (96)
T ss_pred -CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 147799999999999999999999999999887 9999999999986
No 53
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.45 E-value=2.8e-13 Score=138.60 Aligned_cols=179 Identities=16% Similarity=0.251 Sum_probs=144.7
Q ss_pred hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHh-----CCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 013669 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 262 (438)
Q Consensus 188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~-----~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~ 262 (438)
+.....+...+++++|. .++++++++.++.++++.|.+ ++...++|+|++ ++++|+++.+|++.. .
T Consensus 122 i~~ll~~~e~tvg~iMt----~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a---~- 192 (449)
T TIGR00400 122 INLLLSYSDDSAGRIMT----IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-KHLKGVLSIRDLILA---K- 192 (449)
T ss_pred HHHHhCCCcchHHHhCc----CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-CeEEEEEEHHHHhcC---C-
Confidence 33345577788999999 779999999999999999975 456779999876 899999999998642 1
Q ss_pred CCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc
Q 013669 263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342 (438)
Q Consensus 263 ~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~ 342 (438)
...++++ +|.+ +++++.+++++.++++.|.+++...+||+|+ +|+++|+||.+|++..+.+.
T Consensus 193 --------~~~~v~~----im~~-~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~---- 254 (449)
T TIGR00400 193 --------PEEILSS----IMRS-SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSE---- 254 (449)
T ss_pred --------CCCcHHH----HhCC-CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhh----
Confidence 2346888 7876 7889999999999999999999999999997 89999999999999987631
Q ss_pred ccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 343 ~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
..+++|+. ..++..+++++.+++..|.+++...++|. .+.|++| ..++..|
T Consensus 255 -----~~ed~~~~------------~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 255 -----ATEDFYMI------------AAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISNY 305 (449)
T ss_pred -----hHHHHHHh------------cCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHHH
Confidence 24688874 44555567889999999999998888774 4566666 5565544
No 54
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=2.1e-12 Score=106.69 Aligned_cols=110 Identities=16% Similarity=0.331 Sum_probs=91.9
Q ss_pred CceEEcCCCcHHHHHHHHHHcC-CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
++.++.++.++.++++.|.+++ ...++|++ +|+++|+++..|++..+.... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~---~~~~~~i~~~~~~---------- 66 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK---DLSDLPIGEVMTQ---------- 66 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC---CccccCHHHhcCC----------
Confidence 5678899999999999998888 66677777 589999999999988654311 1123578899874
Q ss_pred CCCCeEeCCC--CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 366 VNPPITCKLE--STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 366 ~~~~~~v~~~--~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.++ +++.++++.|.+++.+.+||+|++| +++|+||++|+++
T Consensus 67 --~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Gvit~~dl~~ 114 (115)
T cd04620 67 --PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQG-QLIGLVTAESIRQ 114 (115)
T ss_pred --CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCC-CEEEEEEhHHhhc
Confidence 77888877 7899999999999999999999887 9999999999986
No 55
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.44 E-value=4e-12 Score=104.01 Aligned_cols=108 Identities=31% Similarity=0.453 Sum_probs=95.1
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++++++||+++ ++++|+++..|+++...... ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~----------- 63 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL-----ELAKVKDVMTK----------- 63 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc-----cccCHHHHhcC-----------
Confidence 5788999999999999999999999999994 89999999999998754321 12578888874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+.+.+.+||+|++| +++|+||..|+++
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~ 109 (110)
T cd04588 64 -DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDILR 109 (110)
T ss_pred -CceEECCCCCHHHHHHHHHhcCCCEEEEECCCC-CEEEEEEhHHhhc
Confidence 889999999999999999999999999999887 9999999999985
No 56
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.3e-12 Score=109.40 Aligned_cols=114 Identities=25% Similarity=0.440 Sum_probs=95.9
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----------------ccccCcH
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----------------NFRQLTV 349 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-----------------~~~~~~v 349 (438)
++.++.+++++.++++.|.+.+++++||+|+ +++++|+++..|+...+....... .+...++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 5788999999999999999999999999997 789999999999988764321100 0111277
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
.++|.. ++..+.+++++.+++++|.+.+.+++||+|+ | +++|+||..|++++
T Consensus 81 ~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~iGvit~~dl~~~ 132 (132)
T cd04636 81 EEIMTK------------KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-G-KLVGIISRGDIIRS 132 (132)
T ss_pred HHhccC------------CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-C-EEEEEEEHHHhhcC
Confidence 888764 7899999999999999999999999999998 6 99999999999863
No 57
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.4e-12 Score=111.17 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=95.7
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------------------ccccccC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------------------FSNFRQL 347 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-------------------~~~~~~~ 347 (438)
++.++.+++++.++++.|.+.++.++||+|+ +++++|+++..|+......... +......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 6788999999999999999999999999997 7899999999999876432100 0011235
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++|.. ++.++.+++++.++++.|.+.+.+++||+| +| +++|+||..|+++
T Consensus 82 ~v~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g-~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTR------------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GG-RLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCccCEec-CC-EEEEEEEhHhhhc
Confidence 78888874 789999999999999999999999999999 66 9999999999986
No 58
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.1e-12 Score=110.55 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=91.0
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh-----cCCccccccccCcHHHHhcccCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL-----LKPELFSNFRQLTVRDFMNAVVPTTP 361 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l-----~~~~~~~~~~~~~v~~~m~~~~~~~~ 361 (438)
++.++.+++++.++++.|.+++...+||+++ +|+++|+++..|+.... .... ......++.++|..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~--~~~~~~~v~~im~~------ 72 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGG--ISRSELTVADVMTP------ 72 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcC--CCchheEHHHhcCc------
Confidence 4678999999999999999999999999997 78999999999998521 1110 01234579999974
Q ss_pred CCCCCCCCe--Ee----CCCCCHHHHHHHHHhCCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013669 362 DSGKVNPPI--TC----KLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS 414 (438)
Q Consensus 362 ~~~~~~~~~--~v----~~~~tL~ea~~~m~~~~i~~l~VVd~~-g~~lvGvIT~~DIl~ 414 (438)
+.. .+ .+++++.++++.|.+++.+++||+|++ | +++|+||++||++
T Consensus 73 ------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~-~~~G~it~~di~~ 125 (126)
T cd04640 73 ------KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHH-QIRGIISTSDIAR 125 (126)
T ss_pred ------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCC-EEEEEEeHHHHhh
Confidence 332 23 368899999999999999999999987 6 9999999999986
No 59
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=4.7e-12 Score=103.64 Aligned_cols=107 Identities=28% Similarity=0.450 Sum_probs=94.7
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++..+.++.++.+.|.+.+.+++||+++ ++++|+++..|+...+.. .. ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~-~~----~~~~~~~~~~~----------- 64 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRH-GL----GHAPVKDYMST----------- 64 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhc-cc----ccCcHHHHhcC-----------
Confidence 6788999999999999999999999999994 899999999999887532 11 34689999974
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.+++++|.+++.+++||+| +| +++|+||..|+++
T Consensus 65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~~~Gvvt~~di~~ 109 (110)
T cd04595 65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG-RLVGIVTRTDLLR 109 (110)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC-EEEEEEEhHHhhc
Confidence 789999999999999999999999999999 66 9999999999975
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.44 E-value=4.9e-12 Score=103.62 Aligned_cols=109 Identities=28% Similarity=0.440 Sum_probs=94.9
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++..++++.++.+.|.+.+++.+||++ +++++|+++..|++..+...... ...++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~~~~~G~v~~~~l~~~~~~~~~~---~~~~i~~~~~~----------- 65 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--DGRLVGIVTDRDLRNRVVAEGLD---PDTPVSEVMTA----------- 65 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--CCEEEEEEEhHHHHHHHhccCCC---ccCCHHHHhCC-----------
Confidence 577899999999999999999999999998 48999999999998755433221 23578999874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
+++++.+++++.++++.|.+++.+++||+++ | +++|+||.+||++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Giit~~di~~ 110 (111)
T cd04800 66 -PPITIPPDATVFEALLLMLERGIHHLPVVDD-G-RLVGVISATDLLR 110 (111)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhc
Confidence 8899999999999999999999999999998 6 9999999999985
No 61
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=2.4e-12 Score=107.02 Aligned_cols=112 Identities=19% Similarity=0.383 Sum_probs=94.8
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCC-CCc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEV 288 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~-~~v 288 (438)
+++++.+++++.+|++.|.++++..+||+|++ ++++|++|..|+.+...... . +...++.+ +|.. .++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~--~----~~~~~~~~----~~~~~~~~ 70 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGA--D----LQKVPVGV----IMTRMPNI 70 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCC--C----ccCCCHHH----HhCCCCCc
Confidence 57899999999999999999999999999986 79999999999988765321 1 13445666 5652 368
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCC---CeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~---~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.+++++|.++++..+||+|+ + ++++|+||.+|+..
T Consensus 71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 71 TTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 89999999999999999999999999997 4 69999999999864
No 62
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.43 E-value=3e-12 Score=105.19 Aligned_cols=111 Identities=19% Similarity=0.308 Sum_probs=94.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++.+.++|++ +++++|+++..|++..+...... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~G~v~~~dl~~~~~~~~~~--~~~~~v~~i~~~----------- 66 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--GNKLVGIFTSKDIALRVVAQGLD--PESTLVERVMTP----------- 66 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--CCEEEEEEEhHHHHHHHHhcCCC--cCcCCHHHhcCC-----------
Confidence 577889999999999999999999999998 48999999999998544332211 112578999874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+++||+++++ +++|+||..||+.
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-~~~Gvvs~~dl~~ 112 (113)
T cd04587 67 -NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLTH 112 (113)
T ss_pred -CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCC-CEEEEEEHHHhcc
Confidence 788999999999999999999999999999887 9999999999975
No 63
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.5e-12 Score=107.77 Aligned_cols=118 Identities=23% Similarity=0.381 Sum_probs=92.4
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc-ccc--ccCCccccccCCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-DII--ASQPISDLGLPFMSSD 286 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~-~~l--~~~~v~~l~l~~m~~~ 286 (438)
++.++.+++++.+|++.|.+++++++||+|+++++++|+++..|+++++..+...... ... ....+.+ +|..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 76 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLT----IGTS- 76 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcc----cCcC-
Confidence 5788999999999999999999999999997436899999999999876543110000 000 0011112 4554
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||.+|+..
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~~ 122 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVRL 122 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhhc
Confidence 7899999999999999999999999999997 789999999999863
No 64
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.42 E-value=6.1e-12 Score=102.91 Aligned_cols=109 Identities=25% Similarity=0.412 Sum_probs=95.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+.+...+||++ +++++|+++..|++........ ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~G~v~~~~l~~~~~~~~~----~~~~v~~~~~~----------- 64 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD--DGRPLGIVTERDILRLLASGPD----LQTPVGEVMSS----------- 64 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEeHHHHHHHHhcCCC----CCcCHHHhcCC-----------
Confidence 567889999999999999999999999998 4899999999999887643211 24678899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
+++++.+++++.++++.|.+.+.+.+||+|++| +++|+||.+||++
T Consensus 65 -~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~di~~ 110 (111)
T cd04611 65 -PLLTVPADTSLYDARQLMREHGIRHLVVVDDDG-ELLGLLSQTDLLQ 110 (111)
T ss_pred -CceEECCCCCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEhHHhhc
Confidence 789999999999999999999999999999887 9999999999985
No 65
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=7.1e-12 Score=102.85 Aligned_cols=110 Identities=24% Similarity=0.468 Sum_probs=92.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
.+.++.+++++.++.+.|.+++...++|.+ +|+++|+++..|++..+.... ......++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~----------- 66 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHG--AGVLDTTVRAIMNP----------- 66 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcC--CchhcCCHHHHhCC-----------
Confidence 467889999999999999888887777776 689999999999987764211 01124579999974
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.+++++|.+++..++||+|+ | +++|+||.+||++
T Consensus 67 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~-~~~Gvvt~~dl~~ 111 (112)
T cd04625 67 -EPIVASPDDSIDEVRRLMVERHLRYLPVLDG-G-TLLGVISFHDVAK 111 (112)
T ss_pred -CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-C-EEEEEEEHHHhhc
Confidence 6889999999999999999999999999984 6 9999999999986
No 66
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.42 E-value=4.6e-12 Score=125.90 Aligned_cols=191 Identities=17% Similarity=0.261 Sum_probs=145.1
Q ss_pred CCCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccc
Q 013669 55 GRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 134 (438)
Q Consensus 55 ~~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 134 (438)
.+..++.+|+..|.+++++.+||.|.+. +.++.+++..-|++++-......
T Consensus 168 ~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------~~v~~ilt~~rIl~~l~~~~~~~---------------------- 218 (381)
T KOG1764|consen 168 SPESSLLDAVLLLIKSRIHRVPVIDPET-------GEVLYILTQRRILKFLWLNGRLL---------------------- 218 (381)
T ss_pred cCcHHHHHHHHHHHhCCccceeeecccc-------cceeeehhHHHHHHHHHHhhccc----------------------
Confidence 3367899999999999999999999666 69999999999998854432110
Q ss_pred hhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEE
Q 013669 135 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPV 214 (438)
Q Consensus 135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v 214 (438)
. ...+...++.|+-. ..|..+..+
T Consensus 219 --------------------------------------------------~-----~~~~l~~s~~dl~i-g~~~~i~~i 242 (381)
T KOG1764|consen 219 --------------------------------------------------P-----LPSLLSKSLSDLGI-GTWSNIASI 242 (381)
T ss_pred --------------------------------------------------c-----cHHHhhCCHHHhCc-chhhhheee
Confidence 0 01122233443322 234679999
Q ss_pred eCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC-ccccc-cCCCCCCCceEEc
Q 013669 215 ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP-ISDLG-LPFMSSDEVITIQ 292 (438)
Q Consensus 215 ~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~-v~~l~-l~~m~~~~vv~v~ 292 (438)
..++++.+|+++|.+.+++.+||+|.. |+.+|+++..|+.....+.. ...+ ..+ ++... ..-.....+++|.
T Consensus 243 ~~~~~v~~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~-~~~~----~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 243 SEDTPVIEALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGT-YNNL----DLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred cCCCcHHHHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCc-cCcc----chhHHHHHhhhcccccCccEEEe
Confidence 999999999999999999999999988 77899999999988776542 1111 111 21110 0011224689999
Q ss_pred CCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669 293 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337 (438)
Q Consensus 293 ~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~ 337 (438)
+++++.+++..|..++++++.|||+ +|.++|+||.+|++.++..
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVL 360 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHh
Confidence 9999999999999999999999998 8999999999999998764
No 67
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=4e-12 Score=105.88 Aligned_cols=112 Identities=29% Similarity=0.443 Sum_probs=95.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------ccccccCcHHHHhcccCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------FSNFRQLTVRDFMNAVVPT 359 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-------~~~~~~~~v~~~m~~~~~~ 359 (438)
+++++.+++++.++.+.|.+.++.++||++ +|+++|+++..|++..+..... ...+...++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE--GGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR---- 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE--CCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC----
Confidence 577899999999999999999999999999 4899999999999876542110 011234578888864
Q ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.+++++|.+.+.+++||+|+ | +++|+||.+|+++
T Consensus 76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 --------PVITIEPDTSVSDVASLMLENNIGGLPVVDD-G-KLVGIVTRTDILR 120 (121)
T ss_pred --------CceEECCCCcHHHHHHHHHHcCCCcccEEEC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999998 7 9999999999986
No 68
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.41 E-value=6.4e-12 Score=102.77 Aligned_cols=109 Identities=26% Similarity=0.447 Sum_probs=94.7
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
+++++.+++++.++++.|.+.+++.+||+++ ++++|+++..|+......... ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~~----------- 64 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE----ATVLVGDVMTR----------- 64 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc----cccCHHHhccC-----------
Confidence 5788999999999999999999999999994 899999999999876543211 12467788874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++..++++.++++.|.+++.+++||+|+++ +++|+||..||++
T Consensus 65 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~ 110 (111)
T cd04612 65 -DPVTASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDLLR 110 (111)
T ss_pred -CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCC-CEEEEEEHHHhhh
Confidence 889999999999999999999999999999887 9999999999986
No 69
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.41 E-value=5.4e-12 Score=104.88 Aligned_cols=113 Identities=27% Similarity=0.430 Sum_probs=95.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT 359 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-------~~~~~~v~~~m~~~~~~ 359 (438)
++.++.+++++.++++.|.+.+...+||+++ |+++|+++..|++.......... .....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR---- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC----
Confidence 5778999999999999999999999999994 89999999999988764321100 0123567888864
Q ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.+++..|.+.+.+++||+|++| +++|+||..||++
T Consensus 76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvvt~~di~~ 121 (122)
T cd04585 76 --------DPITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDLFR 121 (122)
T ss_pred --------CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCC-cEEEEEEHHHhhh
Confidence 789999999999999999999999999999887 9999999999986
No 70
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=1e-11 Score=126.69 Aligned_cols=114 Identities=18% Similarity=0.297 Sum_probs=100.9
Q ss_pred CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 361 (438)
Q Consensus 282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 361 (438)
+|.. +++++.+++++.++++.|.+++++.++|+| +++++|+||.+|+... . ...++.++|+.
T Consensus 93 im~~-~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD--~gklvGIVT~rDL~~~--~-------~~~~V~dIMt~------ 154 (475)
T TIGR01303 93 LVLD-TPITLAPHDTVSDAMALIHKRAHGAAVVIL--EDRPVGLVTDSDLLGV--D-------RFTQVRDIMST------ 154 (475)
T ss_pred cccc-CCeEECCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEEEHHHhhcC--C-------CCCCHHHHccC------
Confidence 5665 789999999999999999999999999988 5799999999998533 1 12479999985
Q ss_pred CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669 362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420 (438)
Q Consensus 362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~ 420 (438)
+++++.+++++.+|+++|.+++++++||+|+++ +++|+||.+||++.....|
T Consensus 155 ------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~LvGIIT~~DLl~~~~~~~ 206 (475)
T TIGR01303 155 ------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-TLAGILTRTGALRATIYTP 206 (475)
T ss_pred ------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhCCc
Confidence 899999999999999999999999999999888 9999999999999887654
No 71
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.41 E-value=3.8e-12 Score=125.36 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=105.5
Q ss_pred CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669 195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 274 (438)
Q Consensus 195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~ 274 (438)
...+|+++|... ++++++++++++.+|++.|.+++.+.+||+|++ |+++|++|..|+.+.+.... . +...+
T Consensus 200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~--~----~~~~~ 270 (326)
T PRK10892 200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGI--D----LRQAS 270 (326)
T ss_pred ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCC--C----cccCC
Confidence 446799999821 279999999999999999999888888888876 89999999999987654321 1 23457
Q ss_pred ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669 275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 334 (438)
Q Consensus 275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 334 (438)
+.+ +|++ ++.++.+++++.++++.|.+++++.+||++ +++++|+||.+|+++.
T Consensus 271 v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 IAD----VMTP-GGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHH----hcCC-CCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 888 7887 899999999999999999999999999998 6899999999999865
No 72
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.41 E-value=9.6e-12 Score=101.96 Aligned_cols=110 Identities=24% Similarity=0.347 Sum_probs=94.5
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++++++++.++.++++.|.+.+...++|+++ ++++|+++..|++..+..... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~---~~~~~i~~~~~~----------- 65 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL---PSSTPVGEIATF----------- 65 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC---CCCCCHHHHhCC-----------
Confidence 4678899999999999999999999999984 789999999999887643221 124578899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||..|++++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~dl~~~ 111 (111)
T cd04589 66 -PLITVDPDDFLFNALLLMTRHRIHRVVVREG-G-EVVGVLEQTDLLSF 111 (111)
T ss_pred -CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-C-EEEEEEEhHHhhcC
Confidence 7889999999999999999999999999986 5 99999999999864
No 73
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.40 E-value=3.7e-12 Score=125.21 Aligned_cols=121 Identities=20% Similarity=0.328 Sum_probs=105.7
Q ss_pred CCchhhhccccCCCC--ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 196 STTVRSIIKSYRWAP--FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 196 ~~~v~di~~~~~~~~--~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
..+|+++|. .+ ++++++++++.+|++.|.+++...+||+|++ |+++|+||..|+.+.+..... ...
T Consensus 196 ~~~V~~im~----~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~-------~~~ 263 (321)
T PRK11543 196 LNKVHHLMR----RDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGA-------LTT 263 (321)
T ss_pred HhHHHHHhc----cCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCC-------cCC
Confidence 457999998 55 9999999999999999999899999999987 899999999999887653211 234
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 334 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 334 (438)
++.+ +|.+ ++.++.+++++.++++.|.+++...+||+|+ +++++|+||.+|++.+
T Consensus 264 ~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 264 PVNE----AMTR-GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred cHHH----hcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 6778 7876 8899999999999999999999999999997 7899999999999865
No 74
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=9.2e-12 Score=102.27 Aligned_cols=110 Identities=26% Similarity=0.452 Sum_probs=93.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
++.++.+++++.++++.|.+++.+.+||++ +|+++|+++..|++. .+... . .....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~i~~~~l~~~~~~~~-~--~~~~~~~~~~~~~---------- 66 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE--NDRLVGIVTDRDIVVRAVAEG-R--DPDTTTVGDVMTR---------- 66 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEhHHHHHHHhhcc-C--CcccCCHHHhccC----------
Confidence 578899999999999999999999999998 499999999999873 33221 1 1123358899874
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.+.++.+++++.++++.|.+.+.+++||+|++| +++|+||..|+++
T Consensus 67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~ 112 (113)
T cd04622 67 --GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR 112 (113)
T ss_pred --CccEECCCCCHHHHHHHHHHcCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 788899999999999999999999999999887 9999999999975
No 75
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=5.3e-12 Score=105.62 Aligned_cols=118 Identities=21% Similarity=0.346 Sum_probs=96.8
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc----ccccCCccccccCCCC
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMS 284 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~----~l~~~~v~~l~l~~m~ 284 (438)
.+++++.++.++.++++.|.+++++++||++++ |+++|+++..|+.+.+.......... .....++.+ +|.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 76 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD----IMS 76 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH----hcc
Confidence 468899999999999999999999999999987 89999999999987665321100000 012335667 676
Q ss_pred CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
. ++.++.+++++.++++.|.+++.+.+||+++ +|+++|+|+..|++.
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 77 P-PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred C-CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 5 7899999999999999999999999999997 799999999999864
No 76
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.39 E-value=4.7e-12 Score=130.79 Aligned_cols=176 Identities=20% Similarity=0.338 Sum_probs=132.8
Q ss_pred hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcccc
Q 013669 199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 278 (438)
Q Consensus 199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l 278 (438)
+.++|. .+++++++++++.+++++|.+++++++||+|++ ++++|++|.+|+..... ...++.+
T Consensus 89 ~~dim~----~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~DL~~~~~-----------~~~~V~d- 151 (486)
T PRK05567 89 SESGVV----TDPVTVTPDTTLAEALALMARYGISGVPVVDEN-GKLVGIITNRDVRFETD-----------LSQPVSE- 151 (486)
T ss_pred hhhccc----CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-CEEEEEEEHHHhhhccc-----------CCCcHHH-
Confidence 566776 789999999999999999999999999999976 89999999999954211 2346788
Q ss_pred ccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccC
Q 013669 279 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVV 357 (438)
Q Consensus 279 ~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~-~~~~~v~~~m~~~~ 357 (438)
+|.+.+++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+||+..+..+....+ ...+.|...|.
T Consensus 152 ---im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~--- 224 (486)
T PRK05567 152 ---VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVG--- 224 (486)
T ss_pred ---HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecc---
Confidence 677337899999999999999999999999999998 8999999999999987643221000 01112223332
Q ss_pred CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 358 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 358 ~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
..+ .-.+.++.|.+.+++.+ |+|...|+..++++..+.++.
T Consensus 225 --------------~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 225 --------------VGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred --------------cCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 223 12788889999999855 677532388787766665554
No 77
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=8.8e-12 Score=102.86 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=94.3
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+.+++++.++++.|.+++++.+||+|++.++++|+++..|+++.+..... .....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~----~~~~-~~~ 71 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-----DPDRVNVYE----IMTK-PLI 71 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC-----CCCccCHHH----HhcC-CCe
Confidence 478899999999999999999999999998642699999999999986643210 012346777 6765 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||++ +|+++|+|+..|++.
T Consensus 72 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 72 SVSPDMDIKYCARLMERTNIRRAPVVE--NNELIGIISLTDIFL 113 (114)
T ss_pred eECCCCCHHHHHHHHHHcCCCEeeEee--CCEEEEEEEHHHhhc
Confidence 999999999999999999999999998 489999999999864
No 78
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=8.3e-12 Score=102.78 Aligned_cols=109 Identities=22% Similarity=0.352 Sum_probs=94.2
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 290 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~ 290 (438)
.+++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+.+.+... ...++.+ +|.. ++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~~-~~~~ 70 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-------LDDPVSE----VMNR-NPIT 70 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-------cCCCHHH----hhcC-CCEE
Confidence 6778999999999999999999999999987 899999999999886654311 2345777 6765 7889
Q ss_pred EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+.+++++.++++.|.+++.+.+||+++ +|+++|+||.+|++.
T Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 71 AKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred EcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 999999999999999999999999997 789999999999863
No 79
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.39 E-value=8.2e-12 Score=127.68 Aligned_cols=115 Identities=29% Similarity=0.438 Sum_probs=101.5
Q ss_pred CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCC
Q 013669 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP 358 (438)
Q Consensus 282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~---~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~ 358 (438)
.|.+ +++++.+++++.++++.|.+++++++||+|+ + ++++|+|+.+|++.... ...++.++|..
T Consensus 85 ~~~~-~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-~~~~~~lvGIVt~rDL~~~~~--------~~~~V~dvm~~--- 151 (450)
T TIGR01302 85 GIIS-DPVTISPETTVADVLELMERKGISGIPVVED-GDMTGKLVGIITKRDIRFVKD--------KGKPVSEVMTR--- 151 (450)
T ss_pred ceec-CceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-CCCCCeEEEEEEHHHHhhhhc--------CCCCHHHhhCC---
Confidence 4555 7899999999999999999999999999997 5 79999999999975421 24579999972
Q ss_pred CCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 359 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 359 ~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
.+++++.+++++.++++.|.+++.+.+||+|++| +++|+||++||++.+..
T Consensus 152 --------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G-~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 152 --------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKDIVKRRKF 202 (450)
T ss_pred --------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEhHHhhhcccC
Confidence 2789999999999999999999999999999998 99999999999998753
No 80
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.38 E-value=5.9e-12 Score=102.80 Aligned_cols=106 Identities=26% Similarity=0.450 Sum_probs=91.7
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++..++++.++.+.|.+++...+||+++ +|+++|+++..|++.... ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~--------~~~~v~~~~~~----------- 62 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD--------LDKPVSEVMTP----------- 62 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc--------CCCCHHHhccc-----------
Confidence 5788899999999999999999999999997 799999999999864311 13578899874
Q ss_pred CCCeEeCC-CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKL-ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~-~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.+..+.. ++++.++++.|.+.+.+++||+|++| +++|+||.+|+++
T Consensus 63 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~dil~ 109 (110)
T cd04601 63 -ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG-KLKGLITVKDIEK 109 (110)
T ss_pred -CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCC-CEEEEEEhhhhhc
Confidence 5566666 99999999999999999999999887 9999999999985
No 81
>PRK11573 hypothetical protein; Provisional
Probab=99.38 E-value=1.1e-11 Score=125.10 Aligned_cols=135 Identities=12% Similarity=0.213 Sum_probs=113.0
Q ss_pred cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669 270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348 (438)
Q Consensus 270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~ 348 (438)
+.+.++++ +|++ .+++.++.++++.++++.+.+++++++||+++..+.++|++..+|++..+.+... .....
T Consensus 184 l~~~~v~e----iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---~~~~~ 256 (413)
T PRK11573 184 LEKVTVDD----IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEN 256 (413)
T ss_pred cCCCChhh----cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc---CCHHH
Confidence 35778999 7876 4789999999999999999999999999998645899999999999876432111 11112
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 425 (438)
Q Consensus 349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~ 425 (438)
+.++++ ++.+++++.++.++++.|.+++.|-..|+|+.| ...|+||..||++.+++|..+.|+
T Consensus 257 l~~~~r-------------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG-~~~GiVTleDilEeivGei~de~d 319 (413)
T PRK11573 257 MLRAAD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGDFTTSMS 319 (413)
T ss_pred HHhhcc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC-CeEEEeeHHHHHHHHhCCCCcccC
Confidence 334443 889999999999999999999999999999998 999999999999999988777655
No 82
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.2e-11 Score=100.20 Aligned_cols=103 Identities=30% Similarity=0.429 Sum_probs=91.5
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+++...+||+| +++++|+++..|+.... ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~---------~~~~~~~~~~~----------- 59 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAH---------PNRLVADAMTR----------- 59 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhccc---------ccCCHHHHccC-----------
Confidence 567889999999999999999999999998 58999999999997642 13468888874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++..++||+|+ | +++|+||..|++.
T Consensus 60 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~~l~~ 104 (105)
T cd04599 60 -EVVTISPEASLLEAKRLMEEKKIERLPVLRE-R-KLVGIITKGTIAL 104 (105)
T ss_pred -CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-C-EEEEEEEHHHhcc
Confidence 7899999999999999999999999999998 6 9999999999973
No 83
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=4.7e-12 Score=103.61 Aligned_cols=103 Identities=26% Similarity=0.369 Sum_probs=89.2
Q ss_pred EcCCCcHHHHHHHHHHcC-----CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 291 IQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
+.+++++.++++.|.+++ +..+||+|+ +++++|+++.+|++.. . ...++.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~--~-------~~~~v~~~~~~---------- 61 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA--D-------PDTPVSDIMDT---------- 61 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC--C-------CcchHHHHhCC----------
Confidence 567899999999998877 478999987 7899999999999752 1 13468898874
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
++.++.+++++.++++.|.+.+.+++||+|++| +++|+||..|+++.+
T Consensus 62 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dll~~~ 109 (109)
T cd04606 62 --DVISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVIDVI 109 (109)
T ss_pred --CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCC-cEEEEEEhHHhhhhC
Confidence 789999999999999999999999999999887 999999999999753
No 84
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.1e-11 Score=101.38 Aligned_cols=108 Identities=21% Similarity=0.442 Sum_probs=94.3
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
++++++.+++++.++++.|.+++...+||+|++ |+++|+++..|+++.+... ..++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~----------~~~~~~----~~~~-~~ 65 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARD----------KKSVED----IMTR-NV 65 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhC----------ccCHHH----hcCC-CC
Confidence 568899999999999999999999999999987 8999999999998766532 123666 5665 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus 66 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 66 ITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred eEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 89999999999999999999999999997 789999999999864
No 85
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.3e-11 Score=101.14 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=94.6
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+.++.++.++++.|.+++++++||+|++ ++++|+++..|+++.+..... . ....++.+ +|.. ++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~-~----~~~~~~~~----~~~~-~~~ 70 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGA-S----ALDTPVSE----IMTR-NVI 70 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCC-C----ccccCHHH----hcCC-CcE
Confidence 46788999999999999999999999999987 799999999999987754311 0 12346777 6766 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+.+.+.+||++ +++++|+|+.+|++.
T Consensus 71 ~v~~~~~~~~~l~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~ 112 (113)
T cd04623 71 TVTPDDTVDEAMALMTERRFRHLPVVD--GGKLVGIVSIGDVVK 112 (113)
T ss_pred EECCCCcHHHHHHHHHHcCCCEeEEEe--CCEEEEEEEHHHhhc
Confidence 999999999999999999999999998 489999999999864
No 86
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6.1e-12 Score=103.07 Aligned_cols=109 Identities=16% Similarity=0.348 Sum_probs=94.5
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++++.+++++.++++.|.+.+...+||+|++ ++++|+++..|+.+++.... ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~ 67 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGG--------PDAPVRG----VMRR-DFP 67 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcC--------CCCcHHH----HhcC-CCc
Confidence 46789999999999999988889999999986 89999999999998775431 2246777 6765 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||+++ +++++|++|.+|+..
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 68 TVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred EECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 9999999999999999999999999986 689999999999864
No 87
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.38 E-value=5.3e-12 Score=133.56 Aligned_cols=127 Identities=15% Similarity=0.253 Sum_probs=108.6
Q ss_pred ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669 271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 350 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~ 350 (438)
...++++ +|++ ++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+.+.+.+... ....++.
T Consensus 445 ~~~~V~d----im~~-~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---~~~~~v~ 515 (574)
T PRK01862 445 RTTQMRE----LIQP-AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---TTDKTAA 515 (574)
T ss_pred hhCcHHH----HhcC-CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---cccchHH
Confidence 4567888 7876 7889999999999999999999999999997 8999999999999886533221 1235789
Q ss_pred HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEeHHHHHHHhhc
Q 013669 351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE-AEVVGVITLRDVISCFIF 418 (438)
Q Consensus 351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g-~~lvGvIT~~DIl~~l~~ 418 (438)
++|.. ++.++++++++.+++++|.+++.+++||+|+++ ++++|+||++|+++.+..
T Consensus 516 dim~~------------~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 516 DYAHT------------PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HhccC------------CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 99974 788999999999999999999999999999863 389999999999998764
No 88
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.4e-11 Score=101.06 Aligned_cols=110 Identities=26% Similarity=0.449 Sum_probs=95.2
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+.+++++.++++.|.++++..+||+|++ ++++|+++..|+++.+..... ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~~-~~~ 68 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-------LDTPVSE----IMTR-DLV 68 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-------CccCHHH----hccC-CCE
Confidence 46789999999999999999999999999987 899999999999887764321 2346777 6766 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||+++ +|+++|++|.+|+++
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 69 TVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred EECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 9999999999999999999999999997 799999999999863
No 89
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=5.3e-12 Score=104.10 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=92.0
Q ss_pred CceEEeCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCC-CC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DE 287 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~-i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~-~~ 287 (438)
++.++++++++.+|++.|.+++ .+.+||+|++ ++++|+++..|+++...... ...++.+ +|.+ .+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~ 68 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK 68 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence 4788999999999999997775 8899999976 89999999999988664221 2346677 5653 24
Q ss_pred ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+.++.+++++.++++.|.+++.+.+||+++ +++++|+++.+|++.
T Consensus 69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 69 LVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 678999999999999999999999999996 689999999999864
No 90
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.37 E-value=1.3e-11 Score=126.03 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=131.6
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
+...++.++|. .+++++.+++++.+++++|.+++++.+||+|++ ++++|+||..|+... . ...
T Consensus 86 l~~VKv~~iMi----~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~-------~-----~~~ 148 (479)
T PRK07807 86 VAWVKSRDLVF----DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGV-------D-----RFT 148 (479)
T ss_pred Hhhcccccccc----cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcC-------c-----cCC
Confidence 33455677887 779999999999999999999999999999976 899999999998421 1 124
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM 353 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m 353 (438)
++.+ +|+. +++++.+++++.++++.|.++++..+||+|+ +++++|+||.+||+.....+.....-....|...
T Consensus 149 ~V~d----iMt~-~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa- 221 (479)
T PRK07807 149 QVRD----VMST-DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA- 221 (479)
T ss_pred CHHH----hccC-CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh-
Confidence 6888 7886 8999999999999999999999999999997 7899999999999998654322111111112222
Q ss_pred cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669 354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~ 417 (438)
+.+ .....+.++.|.+.++..+ ++|-..|+ -....+.++.+.
T Consensus 222 ----------------v~~--~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~~~~~~i~~ik 263 (479)
T PRK07807 222 ----------------VGI--NGDVAAKARALLEAGVDVL-VVDTAHGH---QEKMLEALRAVR 263 (479)
T ss_pred ----------------hcc--ChhHHHHHHHHHHhCCCEE-EEeccCCc---cHHHHHHHHHHH
Confidence 222 2346788888888888774 66744424 233344555444
No 91
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.37 E-value=1.2e-11 Score=102.07 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=91.0
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 364 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 364 (438)
++.++.+++++.++++.|.+++...+||+|+. +|+++|+++..|++.... ...++.++|..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--------~~~~v~~~~~~--------- 65 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--------SETPLSEVMTP--------- 65 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--------cCCCHHHhcCC---------
Confidence 56788999999999999999999999999842 489999999999875421 12468899974
Q ss_pred CCCCCeEeCC--CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 365 KVNPPITCKL--ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 365 ~~~~~~~v~~--~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.. ++++.++++.|.+++.+++||+|++| +++|+||.+||++
T Consensus 66 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~-~~~Gvit~~di~~ 113 (114)
T cd04602 66 ---REVLVVAPTGITLEEANEILRESKKGKLPIVNDDG-ELVALVTRSDLKK 113 (114)
T ss_pred ---CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCC-eEEEEEEHHHhhc
Confidence 5666655 99999999999999999999999888 9999999999975
No 92
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1e-11 Score=103.65 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=94.9
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-----ccc--cccCcHHHHhcccCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-----FSN--FRQLTVRDFMNAVVPT 359 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-----~~~--~~~~~v~~~m~~~~~~ 359 (438)
++.++.+++++.++++.|.+.+++++||++ +|+++|+++..|+...+..... ... ....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE--DNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR---- 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe--CCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC----
Confidence 578899999999999999999999999999 4899999999999876542100 000 012367888864
Q ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
+++++.+++++.++++.|.+++..++||+|+++ +++|++|+.|++++
T Consensus 76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~-~~~Gvit~~dll~~ 122 (122)
T cd04637 76 --------DPITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDLLKY 122 (122)
T ss_pred --------CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCC-CEEEEEEHHHhhhC
Confidence 789999999999999999999999999999887 99999999999863
No 93
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=8.6e-12 Score=102.97 Aligned_cols=114 Identities=20% Similarity=0.326 Sum_probs=93.2
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++++++++++.++++.|.+++++.+||+|++ ++++|+++..|+.+++.......+ ..+...++.+ +|.+ ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~v~~----~~~~-~~~ 74 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDL-ERLVDLKVID----VMNT-DVP 74 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhH-HHHhCCcHHH----HhcC-CCc
Confidence 47889999999999999999999999999976 899999999999987754321110 0011456777 6776 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+.+ .+||+++ +++++|++|.+|++.
T Consensus 75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 75 VIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred eecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 9999999999999998765 5899987 799999999999875
No 94
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=2.3e-11 Score=99.82 Aligned_cols=110 Identities=31% Similarity=0.515 Sum_probs=93.9
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++++.|.+.+.+.+||+++ ++++|+++..|++..+..... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~--~~~~~~~~~~~~~----------- 66 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNL--KPREVPVGEVMST----------- 66 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccC--CcccCCHHHhcCC-----------
Confidence 5778899999999999999999999999995 599999999999986543221 1124578899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||..|+++
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 67 -PLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred -CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 7889999999999999999999999999986 4 8999999999975
No 95
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.37 E-value=1.6e-11 Score=100.11 Aligned_cols=109 Identities=23% Similarity=0.446 Sum_probs=91.8
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++.+++++.++.+.|.+++++.+||+++ ++++|+++..|+...+..... . ...++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~--~-~~~~~~~~~~~----------- 65 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKA--K-FSLPVREVMGE----------- 65 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccc--c-cCcCHHHHhcC-----------
Confidence 4678899999999999999999999999994 899999999999988653221 1 13578899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++.++.+++++.+++++|.+ . +.+||++++| +++|+||++||+++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~-~~~Gvvt~~di~~~ 110 (110)
T cd04609 66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGG-KFVGIITRADLLKY 110 (110)
T ss_pred -CCceeCCCCcHHHHHHHHHh-C-CceeEEecCC-eEEEEEeHHHhhcC
Confidence 78899999999999999988 3 4578999887 99999999999864
No 96
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.36 E-value=1.6e-11 Score=102.10 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=95.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc--cc----cccccCcHHHHhcccCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE--LF----SNFRQLTVRDFMNAVVPTT 360 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~--~~----~~~~~~~v~~~m~~~~~~~ 360 (438)
++.++++++++.++.+.|.+.+++++||+|+ +++++|+++..|+........ .. ......++.++|..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK----- 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC-----
Confidence 5778899999999999999999999999997 799999999999987543110 00 01234578899874
Q ss_pred CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
+++++..++++.++++.|.+++.+++||+|+ + +++|++|..||++
T Consensus 76 -------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~~Gvv~~~di~~ 120 (121)
T cd04584 76 -------DVITVHPLDTVEEAALLMREHRIGCLPVVED-G-RLVGIITETDLLR 120 (121)
T ss_pred -------CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999987 6 9999999999986
No 97
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.36 E-value=1.6e-11 Score=101.35 Aligned_cols=111 Identities=14% Similarity=0.270 Sum_probs=94.3
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.++.+++++.++++.|.+.+++.+||+|++ ++++|+++..|+.+.+..... ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~----~~~~-~~~ 69 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEA------GEPSAVDE----VATP-PLL 69 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccc------cccccHHH----hccC-Cce
Confidence 46788999999999999999999999999987 899999999999887653210 02234666 6665 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCC--CeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ--KKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~--~~lvGiIs~~Dl~~ 333 (438)
++.+++++.+++++|.+++...+||+++ + |+++|+||.+|++.
T Consensus 70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 70 TVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL 114 (115)
T ss_pred EECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence 9999999999999999999999999986 5 79999999999874
No 98
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.6e-11 Score=102.43 Aligned_cols=117 Identities=22% Similarity=0.414 Sum_probs=96.2
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc---cccccCCccccccCCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~---~~l~~~~v~~l~l~~m~~~ 286 (438)
+++++.+++++.++++.|.+.+++.+||++++ ++++|+++..|+.+.+......... ......++.+ +|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~- 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----VMKT- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----hhCC-
Confidence 57889999999999999999999999999987 8999999999999876543211100 0113446667 6665
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.++.+++++.++++.|.+.+...+||+++ +|+++|++|..|++.
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 7899999999999999999999999999996 689999999999874
No 99
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.4e-11 Score=103.71 Aligned_cols=117 Identities=16% Similarity=0.279 Sum_probs=91.7
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccc-----ccc--CCccccccCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI-----IAS--QPISDLGLPF 282 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~-----l~~--~~v~~l~l~~ 282 (438)
.++++++++++.++++.|.++++..+||+|++ ++++|+++..|+.+............. +.. ....+ .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDG----V 76 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccc----c
Confidence 37889999999999999999999999999987 899999999999887643211000000 000 01112 3
Q ss_pred CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
|.. ++.++.+++++.++++.|.+++.+.+||+++ +++++|+||..|++.
T Consensus 77 ~~~-~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 77 KSR-PLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred ccC-CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 444 7899999999999999999999999999997 789999999999875
No 100
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.35 E-value=1.6e-11 Score=126.82 Aligned_cols=115 Identities=24% Similarity=0.373 Sum_probs=102.1
Q ss_pred CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 361 (438)
Q Consensus 282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 361 (438)
+|.. +++++.+++++.++++.|.+++++++||+|+ +++++|+|+.+|+..... ...++.++|..
T Consensus 92 im~~-~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~~--------~~~~V~dim~~------ 155 (486)
T PRK05567 92 GVVT-DPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFETD--------LSQPVSEVMTK------ 155 (486)
T ss_pred cccC-CCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhccc--------CCCcHHHHcCC------
Confidence 5665 8999999999999999999999999999997 899999999999965321 23579999972
Q ss_pred CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
++++++.+++++.++++.|.+++++.+||+|++| +++|+||.+||++.+..
T Consensus 156 -----~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 156 -----ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIEKAEEF 206 (486)
T ss_pred -----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEhHHhhhhhhC
Confidence 2889999999999999999999999999999998 99999999999998753
No 101
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.35 E-value=1.4e-11 Score=126.75 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=101.1
Q ss_pred CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013669 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT 360 (438)
Q Consensus 283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~ 360 (438)
|.+ +++++++++++.++++.|.+++++.+||+|+. +++++|+||.+|+.... ..+.+|.++|++.
T Consensus 106 mi~-dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------~~~~~V~eIMt~~---- 172 (505)
T PLN02274 106 FVS-DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------DRETKLSEVMTSD---- 172 (505)
T ss_pred ccC-CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------ccCCcHHHHhccC----
Confidence 444 78999999999999999999999999999852 27999999999997542 1256899999840
Q ss_pred CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
.+++++.+++++.+|++.|.+++++++||||+++ +++|+||++||++.+..
T Consensus 173 ------~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 ------DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG-ELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ------CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhC
Confidence 1378999999999999999999999999999988 99999999999998875
No 102
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.35 E-value=5e-12 Score=106.41 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=94.9
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
.+++++.++.++.++++.|.++++.++||+|++ ++++|+++..|+++.+.... .. ...++.+ +|.+ ++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~-~~-----~~~~v~~----im~~-~~ 69 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGK-VQ-----PSDPVSK----ALYK-QF 69 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhc-cC-----CCCcHHH----Hhhc-cc
Confidence 468899999999999999999999999999987 89999999999987665431 11 3568899 7887 89
Q ss_pred eEEcCCCcHHHHHHHHH---------HcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669 289 ITIQSNELILEAFKRMK---------DNNIGGIPVVEGQQKKIVGNVSIRDIRHL 334 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 334 (438)
.++.+++++.++.++|. +.+...+||+++ +|+++|+||.+|++.+
T Consensus 70 ~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 70 KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSY 123 (124)
T ss_pred eecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhh
Confidence 99999999999998653 335677888886 7999999999999875
No 103
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=2e-11 Score=99.18 Aligned_cols=104 Identities=28% Similarity=0.433 Sum_probs=92.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
+++++..+.++.++++.|.+.+...+||++ +++++|+++..|++.. . ...++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~g~v~~~~l~~~--~-------~~~~~~~~~~~----------- 60 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD--NGKVVGIVSARDLLGK--D-------PDETVEEIMSK----------- 60 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhcc--C-------ccccHHHhCCC-----------
Confidence 678899999999999999988888999998 4899999999999753 1 13468899874
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.+++||+|++| +++|+|+..||++
T Consensus 61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvi~~~di~~ 106 (107)
T cd04610 61 -DLVVAVPEMDIMDAARVMFRTGISKLPVVDENN-NLVGIITNTDVIR 106 (107)
T ss_pred -CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCC-eEEEEEEHHHhhc
Confidence 788999999999999999999999999999987 9999999999985
No 104
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.34 E-value=2.6e-11 Score=98.41 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=88.0
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP 368 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~ 368 (438)
+++.+++++.++++.|.+.+.+.+||+++ ++++|+++..|++... ..++.++|.. +
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----------~~~~~~~~~~------------~ 59 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----------YGDVVDYIVR------------G 59 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----------ccchhhhhhc------------C
Confidence 56889999999999999999999999994 8999999999997641 1246777764 6
Q ss_pred CeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 369 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 369 ~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
+.++.+++++.++++.|.+++...+||+| +| +++|+||.+|+++
T Consensus 60 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~-~~iGvit~~dl~~ 103 (104)
T cd04594 60 IPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DG-KFKGIVTLDSILD 103 (104)
T ss_pred CcEEcCCCCHHHHHHHHHHcCcceEEEEE-CC-EEEEEEEHHHhhc
Confidence 78999999999999999999999999998 46 9999999999975
No 105
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.8e-11 Score=104.43 Aligned_cols=112 Identities=30% Similarity=0.493 Sum_probs=94.1
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-----------------------
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN----------------------- 343 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~----------------------- 343 (438)
+++++.+++++.++++.|.+.+++.+||+++ ++++|+++..|++..+........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 5788999999999999999999999999994 899999999999887643221000
Q ss_pred ------cccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 344 ------FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 344 ------~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
....++.++|.. ++.++..++++.+++..|.+.+.+++||+++ + +++|+||..|+++
T Consensus 80 ~~~~~~~~~~~v~~~~~~------------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRDIMTK------------KVITISPDASIEDAAELMVRHKIKRLPVVED-G-RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHHHcCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence 123467777763 7899999999999999999999999999998 6 9999999999975
No 106
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=2.3e-11 Score=99.96 Aligned_cols=110 Identities=24% Similarity=0.297 Sum_probs=94.2
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 290 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~ 290 (438)
+..+.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+.+.+.... .+...++.+ +|.. ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~------~~~~~~i~~----~~~~-~~~~ 70 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESE------ELKDAKVRE----VMNS-PVIT 70 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhh------hhcCCcHHH----hccC-CceE
Confidence 6788999999999999999999999999986 89999999999987544321 113456777 6766 7899
Q ss_pred EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 71 IDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 999999999999999999999999987 789999999999863
No 107
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.34 E-value=2.9e-11 Score=98.52 Aligned_cols=106 Identities=13% Similarity=0.304 Sum_probs=92.7
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+.++.++.++++.|.++++.++||+|++ ++++|+++..|+.+.... ..++.+ +|.. ++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~~-~~~ 65 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-----------AKSLED----IMLE-DVF 65 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------CCcHhH----hhcC-Cce
Confidence 47789999999999999999999999999986 899999999999875421 235666 6765 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.+++..|.+.+...+||+++ +|+++|++|.+|++.
T Consensus 66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 66 TVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred EECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 9999999999999999999999999997 789999999999864
No 108
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.3e-11 Score=99.64 Aligned_cols=109 Identities=22% Similarity=0.362 Sum_probs=93.3
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+++++++.++++.|.+++++.+||+|++ |+++|+++..|+.++..... ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~----~~~~-~~~ 68 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFES-------FLEKKVFN----IVSQ-DVF 68 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcc-------cccCcHHH----HhcC-CcE
Confidence 47789999999999999999999999999986 89999999999987654321 02346777 6765 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||++ +|+++|+||..|++.
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~di~~ 110 (111)
T cd04626 69 YVNEEDTIDEALDIMREKQIGRLPVVD--DNKLIGVVRTKDILD 110 (111)
T ss_pred EEcCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEhHHhcc
Confidence 999999999999999999999999998 489999999999863
No 109
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.6e-11 Score=102.82 Aligned_cols=118 Identities=25% Similarity=0.442 Sum_probs=95.8
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-----ccccccCCccccccCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----FDIIASQPISDLGLPFMS 284 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-----~~~l~~~~v~~l~l~~m~ 284 (438)
++.++.++.++.+++++|.+++...+||+|+++++++|+++..|+.+++........ .......++.+ +|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT 77 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence 477889999999999999999999999998754799999999999987754311100 00112345667 566
Q ss_pred CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
. ++.++.+++++.++++.|.+.+...+||+++ +|+++|+||..|+++
T Consensus 78 ~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 78 R-NVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred C-CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 5 7999999999999999999999999999986 689999999999875
No 110
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.34 E-value=4e-11 Score=98.97 Aligned_cols=112 Identities=29% Similarity=0.545 Sum_probs=97.1
Q ss_pred CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCC
Q 013669 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPD 362 (438)
Q Consensus 283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~ 362 (438)
|.+ .++++.++.++.++...|.++++..+||++ .++++|++|.+|++..+..... ...++.++|..
T Consensus 5 ~~~-~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~--~~~l~Giit~~di~~~~~~~~~----~~~~v~~v~~~------- 70 (117)
T COG0517 5 MTK-DVITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGGK----RLLPVKEVMTK------- 70 (117)
T ss_pred ccC-CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHhccCC----ccccHHHhccC-------
Confidence 444 789999999999999999999999999998 4589999999999999764322 11168899984
Q ss_pred CCCCCCCeEeCCCCCHHHHHHHHHh-CCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013669 363 SGKVNPPITCKLESTLGSVIHSLAS-KSVHRIYVVAGEEAEVVGVITLRDVI 413 (438)
Q Consensus 363 ~~~~~~~~~v~~~~tL~ea~~~m~~-~~i~~l~VVd~~g~~lvGvIT~~DIl 413 (438)
+++++.+++++.++++.|.+ ++++++||+|+++++++|++|.+|++
T Consensus 71 -----~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 71 -----PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -----CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 88999999999999999999 79999999998722999999999974
No 111
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.3e-11 Score=103.02 Aligned_cols=116 Identities=25% Similarity=0.329 Sum_probs=95.0
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-----------------cccccc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----------------FDIIAS 272 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-----------------~~~l~~ 272 (438)
++.++.+++++.+|++.|.+++...+||+|++ ++++|+++..|+++.+........ ......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 36788999999999999999999999999987 899999999999987753211100 000123
Q ss_pred CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+ +|.. ++..+.+++++.++++.|.+++...+||++ +|+++|+||.+|++.
T Consensus 81 ~~v~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAED----IMTE-EIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICR 134 (135)
T ss_pred ccHHH----hcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhh
Confidence 46777 6765 788999999999999999999999999998 489999999999864
No 112
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.33 E-value=2.1e-11 Score=124.82 Aligned_cols=122 Identities=19% Similarity=0.267 Sum_probs=106.1
Q ss_pred ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHH-----cCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669 271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD-----NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~ 345 (438)
...++++ +|++ ++++++++.++.++++.|.+ ++...++|+|+ +++++|+++.+|++.. . .
T Consensus 129 ~e~tvg~----iMt~-~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a--~-------~ 193 (449)
T TIGR00400 129 SDDSAGR----IMTI-EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA--K-------P 193 (449)
T ss_pred CcchHHH----hCcC-ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC--C-------C
Confidence 5568888 7987 89999999999999999986 45667888987 7999999999998643 1 2
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420 (438)
Q Consensus 346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~ 420 (438)
+.++.++|.+ +++++++++++.+|++.|.+++...+||||++| +++|+||.+|+++.+..+.
T Consensus 194 ~~~v~~im~~------------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 194 EEILSSIMRS------------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-RLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred CCcHHHHhCC------------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC-eEEEEEEHHHHHHHHHhhh
Confidence 3479999985 788999999999999999999999999999998 9999999999999887644
No 113
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.9e-11 Score=97.94 Aligned_cols=94 Identities=19% Similarity=0.384 Sum_probs=84.3
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++.+.+++++.+|++.|.+++++.+||+|++ ++++|+++..|+.+.. .+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------------------~~~ 52 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------------------EVV 52 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------------------CcE
Confidence 47889999999999999999999999999976 8999999999985410 267
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++.+.+||+++ +|+++|++|.+|++.
T Consensus 53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~ 95 (96)
T cd04614 53 TATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK 95 (96)
T ss_pred EecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 8899999999999999999999999996 689999999999864
No 114
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.33 E-value=3.7e-11 Score=97.51 Aligned_cols=104 Identities=18% Similarity=0.305 Sum_probs=90.2
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.+++++.++.+|++.|.+++.+.+||+|++ |+++|++|..|+.+... .++.+ +|.+ .+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~-------------~~~~~----~~~~-~~~ 62 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG-------------GCCGD----HAEP-FKV 62 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc-------------cchhh----hccc-CCE
Confidence 46788999999999999999999999999876 89999999999976421 23556 6665 678
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.+.+++++.++++.|.+++...+||+++ +++++|+|+.+|++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 63 TVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred EECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 8999999999999999999999999997 789999999999864
No 115
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.33 E-value=1.1e-11 Score=116.99 Aligned_cols=118 Identities=21% Similarity=0.397 Sum_probs=106.4
Q ss_pred CCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669 273 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 351 (438)
Q Consensus 273 ~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~ 351 (438)
..+.+ +|.| .+..++.+++++.+..++..+.+.+++||+|. ..+++|++|.+|+.... .+.++..
T Consensus 188 ~~Ved----i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~---------~~t~ieK 253 (432)
T COG4109 188 ITVED----IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK---------PSTTIEK 253 (432)
T ss_pred eeHHH----hccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC---------CCccHHH
Confidence 45677 6664 36788999999999999999999999999998 89999999999997662 2568999
Q ss_pred HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669 352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417 (438)
Q Consensus 352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~ 417 (438)
+|++ +|+++.+.+++..+.++|.-.++.-+||+|++. +++|+||++|+++.+.
T Consensus 254 VMtk------------np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~-~llGiitR~dvlk~lq 306 (432)
T COG4109 254 VMTK------------NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNN-TLLGIITRQDVLKSLQ 306 (432)
T ss_pred Hhcc------------CCeeecccchHHHHHHHHHhccceeeeEEcCCc-eEEEEEEHHHHHHHHH
Confidence 9995 899999999999999999999999999999998 9999999999999885
No 116
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.7e-11 Score=100.89 Aligned_cols=112 Identities=20% Similarity=0.363 Sum_probs=94.1
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.++.+++++.++++.|.+++++.+||+|++ ++++|+++..|+++.+.... .......++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~----~~~~~~~~v~~----~~~~-~~~ 71 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESS----YHCDGVATVRD----IMTT-EVL 71 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhh----hccCCCccHHH----Hhcc-Cce
Confidence 47789999999999999998899999999987 89999999999988664321 00012456777 6766 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 72 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~ 113 (114)
T cd04629 72 TVSPDDSIVDLAQLMLKAKPKRYPVVD--DGKLVGQISRRDVLR 113 (114)
T ss_pred EECCCCcHHHHHHHHHHhCCCccCEEE--CCEEEEEEEHHHHhc
Confidence 999999999999999999999999999 489999999999864
No 117
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.32 E-value=4.2e-11 Score=97.28 Aligned_cols=111 Identities=28% Similarity=0.488 Sum_probs=94.8
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++..++++.++.+.|.+.+...+||+++ +++++|+++.+|+...+..... .....+.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~~~~~----------- 66 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGL---DPLVTVGDVMTR----------- 66 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccC---CccccHHHHhcC-----------
Confidence 5678899999999999999999999999997 6899999999999887653211 011126677764
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+.+.+++||+|+++ +++|+++..|+++
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~ 112 (113)
T cd02205 67 -DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRSDILR 112 (113)
T ss_pred -CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHhhc
Confidence 788999999999999999999999999999987 9999999999986
No 118
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=3.2e-11 Score=100.09 Aligned_cols=113 Identities=17% Similarity=0.331 Sum_probs=92.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcC-CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
++.++.+++++.++++.|...+ .+.+||+++ |+++|+++..|++..+........+...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~---------- 69 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP---------- 69 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC----------
Confidence 4667899999999999998887 889999995 899999999999876543110011234578999974
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCCCeEEEEEeHHHHHH
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVH---RIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~---~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++.+++++.++++.|.+++.. ..+|++++| +++|+||..|+++
T Consensus 70 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~-~~~Gvvs~~di~~ 118 (119)
T cd04598 70 --DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG-RYLGIGTVKDLLR 118 (119)
T ss_pred --CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCC-eEEEEEEHHHHhc
Confidence 789999999999999999998864 346888887 9999999999986
No 119
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.8e-11 Score=98.85 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=93.0
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
.++.++.+++++.+++..|.+++.+.+||+|.+ ++++|+++..|+.... ...++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~------------~~~~v~~----~~~~-~~ 63 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD------------PDTTIEK----VMTK-NP 63 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc------------ccccHHH----HhcC-CC
Confidence 458899999999999999999999999999976 8999999999996421 2346777 6765 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus 64 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 64 ITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred eEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 99999999999999999999999999997 789999999999864
No 120
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=2.4e-11 Score=124.91 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=96.5
Q ss_pred ceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 365 (438)
Q Consensus 288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 365 (438)
..++++++++.++++.|.+++++.+||+|+. +++++|+||..|++... ...+.++.++|+..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-------~~~~~~V~dIMt~~--------- 170 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-------MSLDTKVKDFMTPF--------- 170 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------cCCCCCHHHHhCCC---------
Confidence 4689999999999999999999999999852 47999999999996431 12356899999831
Q ss_pred CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
.+++++.+++++.+|+++|.+++++++||+|+++ +++|+||++||++..
T Consensus 171 -~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g-~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 171 -EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG-NLVYLVFRKDYDSHK 219 (502)
T ss_pred -CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEhHHHHhcc
Confidence 2678999999999999999999999999999888 999999999999965
No 121
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.31 E-value=3.4e-11 Score=121.59 Aligned_cols=169 Identities=10% Similarity=0.156 Sum_probs=129.7
Q ss_pred hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc
Q 013669 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 267 (438)
Q Consensus 188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~ 267 (438)
+..--.+...+|+++|... .++++++.++++.++++.+.+++++++||++++.++++|+++.+|++.++..
T Consensus 182 i~~vl~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~------- 252 (408)
T TIGR03520 182 LQGIVSFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------- 252 (408)
T ss_pred HHHHhccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence 3344567788999999933 5799999999999999999999999999998765689999999999875432
Q ss_pred cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013669 268 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 347 (438)
Q Consensus 268 ~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~ 347 (438)
...++.+ +|. ++.++++++++.++++.|.+++.+..+|+|+ .|.++|+||..|++..+.. +..... +
T Consensus 253 ---~~~~l~~----~~~--~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg-ei~de~-d- 319 (408)
T TIGR03520 253 ---KNFDWQS----LLR--EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG-DISDEF-D- 319 (408)
T ss_pred ---CCCCHHH----HcC--CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC-CCCCcC-C-
Confidence 1224566 564 5789999999999999999999999999997 7999999999999998753 221111 1
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHh
Q 013669 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS 387 (438)
Q Consensus 348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~ 387 (438)
.-.+.+.. .....+.++...++.++.+.|--
T Consensus 320 ~~~~~i~~---------~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 320 DEDLIYSK---------IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred cCccceEE---------eCCCeEEEEeccCHHHHHHHhCC
Confidence 11111221 01245778889999999888843
No 122
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.8e-11 Score=101.86 Aligned_cols=116 Identities=22% Similarity=0.416 Sum_probs=94.5
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc--------------cccccCCc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF--------------DIIASQPI 275 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~--------------~~l~~~~v 275 (438)
+++++.+++++.++++.|.+.+++++||+|++ ++++|+++..|+.+++......... ..+...++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 47889999999999999999999999999987 8999999999999877543211100 00111256
Q ss_pred cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.+ +|.+ ++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|..|++.
T Consensus 81 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EE----IMTK-KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred HH----hccC-CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 66 5665 7899999999999999999999999999994 89999999999874
No 123
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.9e-11 Score=101.10 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=94.3
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-------ccccccCCccccccCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------FDIIASQPISDLGLPF 282 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-------~~~l~~~~v~~l~l~~ 282 (438)
++..+.+++++.+|+++|.+.+.+.+||+|++ ++++|++|..|+.+++........ .......++.+ +
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----A 76 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----H
Confidence 46788999999999999999999999999987 899999999999876532210000 00112345677 6
Q ss_pred CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeC-CCCeEEEEEeHHHHHH
Q 013669 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRH 333 (438)
Q Consensus 283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~ 333 (438)
|.. +++++.+++++.++++.|.+++...+||++. ++++++|+||.+|++.
T Consensus 77 ~~~-~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 MSS-PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hcC-CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 776 7899999999999999999999999999852 2689999999999864
No 124
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.30 E-value=4.6e-11 Score=98.15 Aligned_cols=112 Identities=26% Similarity=0.400 Sum_probs=95.8
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
.++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..++.+.+..... ....++.+ +|.+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~------~~~~~v~~----~~~~-~~ 69 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD------ILTLPVAD----VMTR-NP 69 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc------cccCCHHH----hhcc-CC
Confidence 346778999999999999988889999999987 899999999999987764311 12346777 6776 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+++...+||+++ +++++|+|+..|++.
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 70 KTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999997 799999999999864
No 125
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.30 E-value=2.7e-11 Score=116.80 Aligned_cols=194 Identities=11% Similarity=0.163 Sum_probs=136.2
Q ss_pred hhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc
Q 013669 187 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW 266 (438)
Q Consensus 187 ~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~ 266 (438)
.+..--.+...+|+++|... .+++++++++++.++++.+.+++++++||++++.++++|+++.+|++..+....
T Consensus 57 ~i~~vl~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~---- 130 (292)
T PRK15094 57 MLEGVMDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA---- 130 (292)
T ss_pred HHHHHhccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC----
Confidence 34444567788999999832 479999999999999999999999999999875468999999999987553210
Q ss_pred ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013669 267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346 (438)
Q Consensus 267 ~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~ 346 (438)
....+.+ +|. +++++++++++.++++.|.+++.+.+||+|+ .|.++|+||..|++..+.. +.......
T Consensus 131 ----~~~~l~~----l~r--~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG-ei~de~d~ 198 (292)
T PRK15094 131 ----EAFSMDK----VLR--QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG-EIEDEYDE 198 (292)
T ss_pred ----CcCCHHH----HcC--CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC-CCcccccc
Confidence 1224666 565 4668999999999999999999999999997 7889999999999998763 21111100
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420 (438)
Q Consensus 347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~ 420 (438)
....-+.. ....-+.++...+|.++.+.+-- . +| + + +.-|...++-......
T Consensus 199 -~~~~~i~~---------~~~~~~~v~G~~~l~dl~~~l~~---~-l~---~-~----~~~Tl~G~i~~~l~~i 250 (292)
T PRK15094 199 -EDDIDFRQ---------LSRHTWTVRALASIEDFNEAFGT---H-FS---D-E----EVDTIGGLVMQAFGHL 250 (292)
T ss_pred -ccccccEE---------eCCCeEEEEeccCHHHHHHHhCC---C-CC---C-C----CCccHHHHHHHHhCcC
Confidence 00000111 01234677778888877776522 1 22 1 1 3446666666555443
No 126
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.29 E-value=2.9e-11 Score=124.42 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=100.0
Q ss_pred CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013669 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT 359 (438)
Q Consensus 282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~ 359 (438)
.|.. +++++++++++.+++++|.+++++.+||+++. +++++|+++.+|+...- . ...++.++|++.
T Consensus 101 g~i~-dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~-----~~~~V~diMt~~--- 168 (495)
T PTZ00314 101 GFIM-DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---D-----KSTPVSEVMTPR--- 168 (495)
T ss_pred cccc-CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---c-----CCCCHHHhhCCc---
Confidence 3444 78999999999999999999999999999862 27999999999997431 1 246899999731
Q ss_pred CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669 360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417 (438)
Q Consensus 360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~ 417 (438)
.+++++.+++++.+++++|.+++++.+||+|+++ +++|+||++||++...
T Consensus 169 -------~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 169 -------EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALVSRSDLKKNRG 218 (495)
T ss_pred -------CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEehHhhhccc
Confidence 2689999999999999999999999999999998 9999999999998765
No 127
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.29 E-value=5.9e-11 Score=97.40 Aligned_cols=112 Identities=16% Similarity=0.284 Sum_probs=94.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.++.+++++.++++.|.++++.++||+|++ ++++|+++..|+.+++.+... ....++.+ +|.+ ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~------~~~~~v~~----~~~~-~~~ 69 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL------YDLVVASD----IMTK-PPV 69 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc------cccEEHHH----hccC-CCc
Confidence 47789999999999999999999999999987 899999999999887654311 11256777 6776 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+.+...+||++...++++|+++..|++.
T Consensus 70 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 70 VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999999999831389999999999864
No 128
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=3.1e-11 Score=102.86 Aligned_cols=117 Identities=19% Similarity=0.373 Sum_probs=95.2
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC---CCccc-------------cccc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG---RDWFD-------------IIAS 272 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~---~~~~~-------------~l~~ 272 (438)
.++.++.+++++.++++.|.+++.+++||+|++ ++++|+++..|+.+....... ..|.. ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 468889999999999999999999999999976 899999999999876543210 00000 0123
Q ss_pred CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+ +|.+ ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||..|++.
T Consensus 81 ~~v~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVAD----VMTR-PVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 45667 6765 789999999999999999999999999998 689999999999864
No 129
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.29 E-value=7.5e-11 Score=96.39 Aligned_cols=108 Identities=19% Similarity=0.413 Sum_probs=93.1
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++++.+++++.++++.|.+++++++||+++ +++.|+++..|+++...... ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~ 66 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--------ELAKVKD----VMTK-DVI 66 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--------cccCHHH----HhcC-Cce
Confidence 4778999999999999999999999999997 69999999999998765331 1245667 5665 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+.+...+||+++ +|+++|+|+..|++.
T Consensus 67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 67 TIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred EECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 9999999999999999999999999986 689999999999863
No 130
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=7.7e-11 Score=97.20 Aligned_cols=110 Identities=25% Similarity=0.398 Sum_probs=90.3
Q ss_pred CceEEeCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~-i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
++..+.++.++.++++.|.+++ ...+||+|. ++++|+++..|+++++.... . ....++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~--~----~~~~~i~~----~~~~-~~ 68 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGK--D----LSDLPIGE----VMTQ-PV 68 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCC--C----ccccCHHH----hcCC-Cc
Confidence 4678899999999999998888 566777774 79999999999998765321 0 12346777 6765 77
Q ss_pred eEEcCC--CcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSN--ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.++ +++.++++.|.+++...+||+|+ +|+++|+||.+|+++
T Consensus 69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred EEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 888877 68999999999999999999997 799999999999875
No 131
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.28 E-value=9e-11 Score=95.91 Aligned_cols=109 Identities=18% Similarity=0.350 Sum_probs=94.0
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+++++++.++++.|.+++.+.+||+|+ ++++|+++..|+.++..... . ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~--~-----~~~~v~~----~~~~-~~~ 67 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGP--D-----LQTPVGE----VMSS-PLL 67 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCC--C-----CCcCHHH----hcCC-Cce
Confidence 4678999999999999999989999999986 79999999999998775431 1 2356777 6765 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+.+...+||+++ +|+++|+|+.+|+++
T Consensus 68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 68 TVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred EECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 9999999999999999999999999997 789999999999864
No 132
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.28 E-value=7.1e-11 Score=98.08 Aligned_cols=116 Identities=22% Similarity=0.364 Sum_probs=94.4
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc----ccccCCccccccCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMSS 285 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~----~l~~~~v~~l~l~~m~~ 285 (438)
++.+++++.++.++++.|.+.++..+||+|+ ++++|+++..|+.++........... .....++.+ +|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMTR 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hccC
Confidence 4678999999999999999999999999997 79999999999988764321100000 012245666 6766
Q ss_pred CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.++.+++++.+++..|.+.+.+.+||+++ +|+++|+||..|++.
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 7899999999999999999999999999996 699999999999875
No 133
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.4e-11 Score=100.13 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=89.0
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH-----hhcCCCCCcccccccCCccccccCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMS 284 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~-----l~~~~~~~~~~~l~~~~v~~l~l~~m~ 284 (438)
+++++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+. +.... . .....++.+ +|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~-~----~~~~~~v~~----im~ 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGG-I----SRSELTVAD----VMT 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcC-C----CchheEHHH----hcC
Confidence 46789999999999999999999999999976 899999999999752 22110 0 013456777 676
Q ss_pred CCCceE--E----cCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHH
Q 013669 285 SDEVIT--I----QSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH 333 (438)
Q Consensus 285 ~~~vv~--v----~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~ 333 (438)
+ +... + .+++++.++++.|.+++.+.+||+|+ + |+++|+||.+|+++
T Consensus 72 ~-~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 P-KEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred c-hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 5 3332 3 36889999999999999999999997 5 79999999999864
No 134
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.28 E-value=3.3e-11 Score=115.35 Aligned_cols=113 Identities=26% Similarity=0.402 Sum_probs=98.1
Q ss_pred CCccccccCCCCCCC-ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669 273 QPISDLGLPFMSSDE-VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 351 (438)
Q Consensus 273 ~~v~~l~l~~m~~~~-vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~ 351 (438)
.++++ +|.+ + +.++.+++++.++++.|.+.+++.+||+|+ +|+++|+++..|++..+.... ....++.+
T Consensus 155 ~~v~~----im~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~----~~~~~v~~ 224 (268)
T TIGR00393 155 VKVKD----LMQT-TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGG----SLKSEVRD 224 (268)
T ss_pred hhHHH----HhCC-CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCC----cccCcHHH
Confidence 35667 6776 6 889999999999999999999999999997 799999999999988754211 12467999
Q ss_pred HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 013669 352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408 (438)
Q Consensus 352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT 408 (438)
+|.. ++.++.+++++.+|++.|.+++.+++||+|++| +++|+|+
T Consensus 225 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~l~GvI~ 268 (268)
T TIGR00393 225 FMTL------------GPKTFKLDALLLEALEFLERRKITSLVVVDDHN-KVLGVLH 268 (268)
T ss_pred hCCC------------CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCC-eEEEEEC
Confidence 9974 788999999999999999999999999999988 9999985
No 135
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.27 E-value=9.5e-11 Score=95.93 Aligned_cols=109 Identities=21% Similarity=0.390 Sum_probs=92.5
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.+++++.++.++++.|.+++++.+||+|+ ++++|+++..|+.+.+.... .. ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~-~~-----~~~~i~~----~~~~-~~~ 68 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEG-LD-----PDTPVSE----VMTA-PPI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccC-CC-----ccCCHHH----HhCC-CCe
Confidence 4778999999999999999999999999986 79999999999987554321 10 2346777 5665 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++.+++||++ +|+++|++|.+|++.
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Giit~~di~~ 110 (111)
T cd04800 69 TIPPDATVFEALLLMLERGIHHLPVVD--DGRLVGVISATDLLR 110 (111)
T ss_pred EECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhc
Confidence 999999999999999999999999998 489999999999874
No 136
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=9.7e-11 Score=96.04 Aligned_cols=110 Identities=16% Similarity=0.309 Sum_probs=91.2
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
.+.++.+++++.++++.|.+++.+.++|.++ ++++|+++..|+.+.+.... .. +...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----~~~~-~~~ 69 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHG-AG----VLDTTVRA----IMNP-EPI 69 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcC-Cc----hhcCCHHH----HhCC-CCe
Confidence 3678899999999999998888877777754 79999999999998765321 11 12346778 6765 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 70 ~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 70 VASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 999999999999999999999999998 589999999999874
No 137
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=1.1e-10 Score=95.40 Aligned_cols=108 Identities=26% Similarity=0.473 Sum_probs=93.7
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
.++.+++++.++.++++.|.+++..++||+|+ ++++|+++..|+.+.+... + ...++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~----~----~~~~~~~----~~~~-~~ 66 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHG----L----GHAPVKD----YMST-DV 66 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcc----c----ccCcHHH----HhcC-CC
Confidence 46889999999999999999889999999997 7999999999998866322 1 3356777 6776 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+++...+||++ +|+++|++|..|++.
T Consensus 67 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 67 VTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 9999999999999999999999999998 689999999999864
No 138
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.27 E-value=6.7e-11 Score=96.43 Aligned_cols=101 Identities=20% Similarity=0.373 Sum_probs=87.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 364 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 364 (438)
....+.+++++.++.+.|.+.+...+||+++. +++++|+++.+|+.....+ +|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------~m~~--------- 59 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------YIDP--------- 59 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------hccC---------
Confidence 46778999999999999999988999999852 3899999999999876431 5653
Q ss_pred CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
++.++++++++.++++.|.+++.+++||++ +| +++|+||++||+++
T Consensus 60 ---~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~-~~~Gvvt~~dl~~~ 105 (105)
T cd04591 60 ---SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EG-RLVGIITRKDLLKA 105 (105)
T ss_pred ---CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CC-eEEEEEEhhhhhcC
Confidence 788999999999999999999999999995 55 99999999999863
No 139
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.27 E-value=1.2e-10 Score=118.94 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=102.9
Q ss_pred CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669 195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 274 (438)
Q Consensus 195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~ 274 (438)
...++.++|. .+++++.+++++.+++++|.+++++.+||+|+ ++++|+||.+|+... . ...+
T Consensus 86 ~~VKv~eim~----~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-------~-----~~~~ 147 (475)
T TIGR01303 86 AFVKSRDLVL----DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-------D-----RFTQ 147 (475)
T ss_pred hhcchhhccc----cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-------C-----CCCC
Confidence 3445667777 67899999999999999999999999999985 689999999998321 1 2246
Q ss_pred ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013669 275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 338 (438)
Q Consensus 275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~ 338 (438)
+.+ +|+. +++++.+++++.+++++|.++++..+||+|+ +++++|+||.+||++....+
T Consensus 148 V~d----IMt~-~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 148 VRD----IMST-DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHH----HccC-CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC
Confidence 888 7886 8999999999999999999999999999997 79999999999999876543
No 140
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.27 E-value=9.7e-11 Score=95.87 Aligned_cols=109 Identities=14% Similarity=0.259 Sum_probs=91.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++++.+++++.+|++.|.++++..+||++++.++++|+++..|+.+...... . ..++.+ ++ . ++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~------~~~~~~----~~-~-~~~ 67 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--E------DLDLRD----LL-R-PPL 67 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--C------cCCHHH----Hh-c-CCe
Confidence 36889999999999999999999999999875368999999999998775321 1 134555 44 3 578
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++.+.+||+++ +|+++|++|.+|++.
T Consensus 68 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 68 FVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred ecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 8999999999999999999999999997 799999999999863
No 141
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.27 E-value=7.2e-11 Score=120.26 Aligned_cols=134 Identities=22% Similarity=0.432 Sum_probs=113.7
Q ss_pred cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669 270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348 (438)
Q Consensus 270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~ 348 (438)
+.+.++++ +|++ .+++.++.+.++.++.+.+.+++++++||+++..+.++|++..+|++....+... ...
T Consensus 203 l~~~~v~e----iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-----~~~ 273 (429)
T COG1253 203 LDDRTVRE----IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-----DLD 273 (429)
T ss_pred cCCcEeee----EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-----ccc
Confidence 35778999 7887 4788999999999999999999999999999547899999999999998764321 011
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccc
Q 013669 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN 426 (438)
Q Consensus 349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~ 426 (438)
....+ +++..++++.++.++++.|.+.+.|-..|+|+.| .+.|+||+.||++.+++|.++.+++
T Consensus 274 ~~~~~-------------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG-~~~GlVTleDIiEeIvGei~de~d~ 337 (429)
T COG1253 274 LRVLV-------------RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYG-GVEGLVTLEDIIEEIVGEIPDEHDE 337 (429)
T ss_pred hhhcc-------------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCC-CeEEEeEHHHHHHHHhCCCcCcccc
Confidence 11222 2789999999999999999999999999999998 9999999999999999988877764
No 142
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.27 E-value=5.4e-11 Score=125.93 Aligned_cols=127 Identities=12% Similarity=0.224 Sum_probs=107.5
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
+...+++|+|. +++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+.+..... ....
T Consensus 444 L~~~~V~dim~----~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~------~~~~ 512 (574)
T PRK01862 444 LRTTQMRELIQ----PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRD------TTDK 512 (574)
T ss_pred HhhCcHHHHhc----CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccc------cccc
Confidence 44567999998 678899999999999999999999999999987 899999999999886543211 1234
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhc
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~ 336 (438)
++.+ +|.+ ++.++.+++++.++++.|.+++.+.+||+|+++ ++++|+||++|+++.+.
T Consensus 513 ~v~d----im~~-~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 513 TAAD----YAHT-PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred hHHH----hccC-CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 6778 7876 789999999999999999999999999998622 58999999999998864
No 143
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.27 E-value=1e-10 Score=96.01 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=92.7
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+.+++++.++++.|.+++.+.+||+++ ++++|+++..|+++.+.... ... ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~-~~~----~~~~v~~----i~~~-~~~ 69 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQG-LDP----ESTLVER----VMTP-NPV 69 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcC-CCc----CcCCHHH----hcCC-CCe
Confidence 4778999999999999999999999999986 79999999999986544221 110 1246777 6765 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++..++||+++ +++++|+||..|++.
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 70 CATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred EEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 9999999999999999999999999997 689999999999864
No 144
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=6.2e-11 Score=98.78 Aligned_cols=117 Identities=21% Similarity=0.347 Sum_probs=93.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC-Cc--ccccccCCccccccCCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR-DW--FDIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~-~~--~~~l~~~~v~~l~l~~m~~~ 286 (438)
+++++.+++++.++++.|.+++++++||+|.+ ++++|+++..|+++........ .. .......++.+ +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----IMST- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----HhcC-
Confidence 47889999999999999999999999999976 8999999999998753211000 00 00012345666 5665
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.++.+++++.++++.|.+.+.+.+||+++ +|+++|++|..|++.
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 7899999999999999999999999999997 799999999999874
No 145
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=1.5e-10 Score=94.96 Aligned_cols=110 Identities=23% Similarity=0.357 Sum_probs=92.1
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++..|+++.+...... ....++.+ +|.+ ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~~~----~~~~-~~~ 69 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLK-----PREVPVGE----VMST-PLI 69 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCC-----cccCCHHH----hcCC-CcE
Confidence 4678899999999999999999999999996 4899999999999866432100 12346777 6765 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||+++ ++++|+|+.+|++.
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 70 TIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 9999999999999999999999999995 49999999999863
No 146
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.26 E-value=4.1e-11 Score=119.88 Aligned_cols=126 Identities=21% Similarity=0.335 Sum_probs=111.4
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
+-.+++.+++. .|.+++++..++.+|...|.+++++++.+++++ +...||+|.+|+...+...- .+ ...
T Consensus 146 ~~~trv~~~~~----~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g-~~-----~~~ 214 (610)
T COG2905 146 FILTRVGEVKT----LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADG-RS-----KTQ 214 (610)
T ss_pred HHHHHHHHHhc----CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcC-CC-----ccc
Confidence 44466788888 889999999999999999999999999999977 89999999999987665321 22 467
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~ 337 (438)
++++ +|+. +++++..++.+.+|+-.|.++++.++||++ +|+++|+||..||+.+...
T Consensus 215 ~V~e----vmT~-p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 215 KVSE----VMTS-PVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred chhh----hhcc-CceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhCC
Confidence 8999 8997 999999999999999999999999999999 7999999999999999864
No 147
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.8e-10 Score=93.56 Aligned_cols=104 Identities=18% Similarity=0.368 Sum_probs=90.6
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 366 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 366 (438)
++.++..+.++.+++..|.+.+.+.+||+++ +++++|+++..+++... ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~~---------~~~~~~~~~~~----------- 60 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRNP---------EEEQLALLMTR----------- 60 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhcc---------ccchHHHHhcC-----------
Confidence 5778899999999999999999999999997 68999999999997531 12357788764
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
++.++..++++.++++.|.+++.+.+||+|+ | +++|+||..|+++
T Consensus 61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~G~it~~d~~~ 105 (106)
T cd04638 61 -DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-G-KLVGIVTVADIVR 105 (106)
T ss_pred -CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence 7888999999999999999999999999985 5 9999999999975
No 148
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.25 E-value=1.3e-10 Score=95.04 Aligned_cols=109 Identities=26% Similarity=0.420 Sum_probs=92.7
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++.+.+++++.++++.|.+.+++++||+|+ ++++|+++..|+.+...... . ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~--~-----~~~~~~~----~~~~-~~~ 67 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR--E-----ATVLVGD----VMTR-DPV 67 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc--c-----cccCHHH----hccC-CCe
Confidence 5788999999999999999989999999997 79999999999987664321 0 1124555 5665 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.++++.|.+++...+||+++ +++++|++|..|+++
T Consensus 68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 68 TASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred EECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 9999999999999999999999999986 799999999999864
No 149
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.25 E-value=1.7e-10 Score=94.50 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=92.6
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++.++++.++.++++.|.+++...+||+|+ +++.|+++..|+.+.+.... . ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~-~-----~~~~~i~~----~~~~-~~~ 68 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDG-L-----PSSTPVGE----IATF-PLI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCC-C-----CCCCCHHH----HhCC-CcE
Confidence 3678899999999999999999999999997 68999999999988764321 0 13446777 6765 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.+++++++.++++.|.+++...+||++ +++++|+||..|++.
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~ 110 (111)
T cd04589 69 TVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLS 110 (111)
T ss_pred EECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhc
Confidence 999999999999999999999999998 589999999999874
No 150
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.23 E-value=1.6e-10 Score=96.03 Aligned_cols=116 Identities=19% Similarity=0.362 Sum_probs=93.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc---cccccCCccccccCCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~---~~l~~~~v~~l~l~~m~~~ 286 (438)
++.++++++++.+|++.|.+.+.+++||+|++ ++++|+++..|+.+........... ......++.+ +|..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~- 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----IMTK- 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----HhhC-
Confidence 47789999999999999999999999999987 8999999999998765321100000 0123456777 6766
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.++.+++++.++++.|.+.+...+||++ +++++|+++.+|++.
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence 789999999999999999999999999998 489999999999864
No 151
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.23 E-value=2.1e-10 Score=94.60 Aligned_cols=108 Identities=27% Similarity=0.498 Sum_probs=94.8
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
..++++.++.++.+|+..|.++++..+||++. .+++|++|.+|+.+.+...... ..++.+ +|+. ++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~-------~~~v~~----v~~~-~~ 72 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKR-------LLPVKE----VMTK-PV 72 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCc-------cccHHH----hccC-Cc
Confidence 56899999999999999999999999999986 4799999999999988755211 115777 7876 89
Q ss_pred eEEcCCCcHHHHHHHHHH-cCCceEeEEeCCCC-eEEEEEeHHHH
Q 013669 289 ITIQSNELILEAFKRMKD-NNIGGIPVVEGQQK-KIVGNVSIRDI 331 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~~~-~lvGiIs~~Dl 331 (438)
+++.++.++.++.+.|.+ ++++++||+++ ++ +++|++|.+|+
T Consensus 73 ~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di 116 (117)
T COG0517 73 VTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDI 116 (117)
T ss_pred EEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHc
Confidence 999999999999999999 79999999997 65 99999999997
No 152
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.23 E-value=1.4e-10 Score=119.41 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=103.4
Q ss_pred cccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669 266 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345 (438)
Q Consensus 266 ~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~ 345 (438)
.++.+...++++ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +++++|+|+..|++..+..... ..
T Consensus 328 ~~~~l~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~ 398 (454)
T TIGR01137 328 VFDVLKNATVKD----LHLP-APVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA---NP 398 (454)
T ss_pred HHHHhccCCHHH----hCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC---Cc
Confidence 333455667888 7876 8999999999999999999999999999997 7899999999999886643211 12
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
..++.++|.. ++.++++++++.+++++|.+++ .+||++++ +++|+||++||++.|
T Consensus 399 ~~~v~~im~~------------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g-~liGvvt~~dll~~l 453 (454)
T TIGR01137 399 DDAVSKVMSK------------KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEG-KPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCHHHhcCC------------CCeEECCcCcHHHHHHHHHHCC---eeEEEECC-EEEEEEEHHHHHHhh
Confidence 3479999974 7889999999999999998753 45666666 999999999999875
No 153
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.23 E-value=1.8e-10 Score=95.06 Aligned_cols=106 Identities=18% Similarity=0.331 Sum_probs=88.7
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcC---CCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP---GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~---~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~ 286 (438)
++.++.+++++.++++.|.+++...+||+|. + ++++|+++..|+..... ...++.+ +|..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~-~~~~G~v~~~dl~~~~~-----------~~~~v~~----~~~~- 65 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG-GKLLGIVTSRDIDFLTD-----------SETPLSE----VMTP- 65 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC-CEEEEEEEhHHhhhhhc-----------cCCCHHH----hcCC-
Confidence 4778899999999999999889999999996 4 79999999999864211 1235677 6765
Q ss_pred CceEEcC--CCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 287 EVITIQS--NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 287 ~vv~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
...++.. ++++.++++.|.+++...+||+++ +++++|+||.+|++.
T Consensus 66 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 66 REVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred CceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 5666655 999999999999999999999987 789999999999864
No 154
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=2e-10 Score=94.29 Aligned_cols=110 Identities=23% Similarity=0.440 Sum_probs=91.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH-HHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~-~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
+++++.+++++.++++.|.+++.+.+||+|+ ++++|+++..|++ +.+... .. ....++.+ +|.. .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~--~~----~~~~~~~~----~~~~-~~ 68 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEG--RD----PDTTTVGD----VMTR-GV 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhcc--CC----cccCCHHH----hccC-Cc
Confidence 4678999999999999999999999999996 7999999999987 333322 11 12234777 6765 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+.+..++||+++ +|+++|+++..|+++
T Consensus 69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 69 VTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred cEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 89999999999999999999999999986 689999999999864
No 155
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.2e-10 Score=97.20 Aligned_cols=116 Identities=18% Similarity=0.314 Sum_probs=93.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc--c--cccCCccccccCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD--I--IASQPISDLGLPFMSS 285 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~--~--l~~~~v~~l~l~~m~~ 285 (438)
+++++.+++++.++++.|.++++.++||+|+ |+++|+++..|+.+.+.......... . ....++.+ +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMTR 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhcC
Confidence 4788999999999999999999999999996 79999999999988664321000000 0 01235666 6765
Q ss_pred CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+++++.+++++.++++.|.+++...+||+++ +++++|+++..|++.
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 7899999999999999999999999999987 789999999999875
No 156
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.5e-10 Score=96.38 Aligned_cols=114 Identities=30% Similarity=0.468 Sum_probs=93.4
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-----ccccccCCccccccCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----FDIIASQPISDLGLPFMS 284 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-----~~~l~~~~v~~l~l~~m~ 284 (438)
+++++.+++++.++++.|.+++++.+||+|+ ++++|+++..|+.+.+..... .+ ...+...++.+ +|.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~ 74 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRP-LVRDRHQERRIRNLPVSD----IMT 74 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhh-cccchhhhhhhhccCHHH----Hcc
Confidence 5778999999999999999999999999996 799999999999876653210 00 00122345666 576
Q ss_pred CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
. ++.++.+++++.++++.|.+.+.+.+||+++ ++++|+++.+|++.
T Consensus 75 ~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 75 R-PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred C-CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 5 7899999999999999999999999999994 89999999999874
No 157
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.21 E-value=1.3e-10 Score=111.33 Aligned_cols=113 Identities=21% Similarity=0.356 Sum_probs=98.3
Q ss_pred CchhhhccccCCCC-ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669 197 TTVRSIIKSYRWAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 275 (438)
Q Consensus 197 ~~v~di~~~~~~~~-~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v 275 (438)
.+++++|. .+ +.++.+++++.++++.|.+.+++.+||+|++ ++++|+++..|+.+.+.... . ...++
T Consensus 155 ~~v~~im~----~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~--~-----~~~~v 222 (268)
T TIGR00393 155 VKVKDLMQ----TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGG--S-----LKSEV 222 (268)
T ss_pred hhHHHHhC----CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCC--c-----ccCcH
Confidence 46889998 56 8899999999999999999999999999977 89999999999988664321 1 34578
Q ss_pred cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEe
Q 013669 276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 327 (438)
Q Consensus 276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs 327 (438)
++ +|.+ ++.++.+++++.++++.|.+++...+||+|+ +|+++|+|+
T Consensus 223 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 223 RD----FMTL-GPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred HH----hCCC-CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 88 7876 7899999999999999999999999999997 789999985
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.21 E-value=1.6e-10 Score=94.30 Aligned_cols=107 Identities=20% Similarity=0.431 Sum_probs=89.8
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
.+++.+.+++++.++++.|.+++...+||+|++ |+++|+++..++.+... ...++.+ +|.. .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-----------~~~~v~~----~~~~-~~ 64 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-----------LDKPVSE----VMTP-EN 64 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-----------CCCCHHH----hccc-Cc
Confidence 457889999999999999999999999999987 89999999999854211 2346777 6765 55
Q ss_pred eEEcC-CCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQS-NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
..+.. ++++.++++.|.+.+.+.+||+++ +++++|+|+.+|++.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 65 LLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred eEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 66666 999999999999999999999997 789999999999864
No 159
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.5e-10 Score=92.31 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=88.9
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++..+.+++++.++++.|.+++.+.+||+| + ++++|+++..|+.+.. ...++.+ +|.+ ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~------------~~~~~~~----~~~~-~~~ 62 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAH------------PNRLVAD----AMTR-EVV 62 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhccc------------ccCCHHH----HccC-CCE
Confidence 467889999999999999989999999998 4 7999999999997632 1235666 6766 789
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 332 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~ 332 (438)
++.+++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus 63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~ 103 (105)
T cd04599 63 TISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIA 103 (105)
T ss_pred EECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhc
Confidence 999999999999999999999999999 48999999999986
No 160
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=1.6e-10 Score=94.38 Aligned_cols=102 Identities=17% Similarity=0.342 Sum_probs=86.9
Q ss_pred EeCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 214 VATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 214 v~~~~sl~~al~~m~~~~-----i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
+.+++++.++++.|.+++ +..+||+|++ ++++|+++..|+++. . ...++.+ +|.+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~---~---------~~~~v~~----~~~~-~~ 63 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA---D---------PDTPVSD----IMDT-DV 63 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC---C---------CcchHHH----HhCC-CC
Confidence 568899999999998777 4789999976 899999999998651 0 2345777 6665 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 334 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 334 (438)
..+.+++++.++++.|.+++...+||+++ +++++|+||..|++..
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~ 108 (109)
T cd04606 64 ISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV 108 (109)
T ss_pred eEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence 99999999999999999999999999987 7899999999999865
No 161
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.20 E-value=3.7e-10 Score=91.64 Aligned_cols=111 Identities=22% Similarity=0.387 Sum_probs=93.1
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.++.+++++.++++.|.+++.+++||++++ ++++|+++..|+.+.+....... ...+.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~----~~~~-~~~ 69 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDP------LVTVGD----VMTR-DVV 69 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCc------cccHHH----HhcC-Cce
Confidence 46788999999999999999999999999987 79999999999998776432110 011445 5655 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.+.+++++.+++..|.+.+...+||+++ +++++|+++..|++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 70 TVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred ecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 8999999999999999999999999997 799999999999864
No 162
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=1.3e-10 Score=119.40 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=100.0
Q ss_pred hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669 199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 276 (438)
Q Consensus 199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~ 276 (438)
|+++|...- ....++++++++.+|+++|.+++++.+||+|++ +++++|+||..|+.+.. . ....+++
T Consensus 96 Vk~~~~g~i-~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~---------~~~~~V~ 164 (502)
T PRK07107 96 VKNYKAGFV-VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-M---------SLDTKVK 164 (502)
T ss_pred HHHHhcCCc-CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-c---------CCCCCHH
Confidence 556554221 223689999999999999999999999999962 37999999999985321 0 1456788
Q ss_pred ccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 277 DLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 277 ~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
+ +|++ .+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|++....
T Consensus 165 d----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~~ 220 (502)
T PRK07107 165 D----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHKE 220 (502)
T ss_pred H----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhccc
Confidence 8 7874 36889999999999999999999999999997 789999999999988643
No 163
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.18 E-value=3.8e-10 Score=91.90 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=89.1
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
+++++.+++++.++++.|.+++++.+||+|. ++++|+++..|+.+.+..... . ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~-~-----~~~~~~~----~~~~-~~~ 68 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKA-K-----FSLPVRE----VMGE-PLP 68 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccc-c-----cCcCHHH----HhcC-CCc
Confidence 4778999999999999999999999999996 799999999999987754311 0 1345666 5665 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++++++++.++.++|.+ . ..+||+++ +++++|++|.+|++.
T Consensus 69 ~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04609 69 TVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLK 109 (110)
T ss_pred eeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhc
Confidence 99999999999999988 3 34788886 799999999999875
No 164
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.17 E-value=5.3e-10 Score=90.66 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=86.9
Q ss_pred eEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEE
Q 013669 212 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITI 291 (438)
Q Consensus 212 i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v 291 (438)
+++.+++++.++++.|.+.++..+||+|+ ++++|+++..|+.+.. ..++.+ +|.. .+.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-------------~~~~~~----~~~~-~~~~v 63 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-------------YGDVVD----YIVR-GIPYV 63 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-------------ccchhh----hhhc-CCcEE
Confidence 57899999999999999999999999996 7999999999997531 124556 5665 68899
Q ss_pred cCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 292 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 292 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 64 ~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 64 RLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred cCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 689999999999864
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.15 E-value=4.1e-10 Score=116.06 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=98.5
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~ 286 (438)
.+++++.+++++.+++++|.+++++.+||+|++ .++++|+||..|+.... . ...++.+ +|++.
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~---------~~~~V~e----IMt~~ 172 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--D---------RETKLSE----VMTSD 172 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--c---------cCCcHHH----HhccC
Confidence 678999999999999999999999999999873 27999999999995421 1 3567888 78762
Q ss_pred -CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669 287 -EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337 (438)
Q Consensus 287 -~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~ 337 (438)
+++++.+++++.++++.|.+++...+||+|+ +++++|+||.+|+++.+..
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence 2789999999999999999999999999997 7899999999999988754
No 166
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=6.7e-10 Score=90.11 Aligned_cols=105 Identities=16% Similarity=0.354 Sum_probs=90.5
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
.+++++..+.++.++++.|.+.+...+||+|+ ++++|+++..|++.. . ...++.+ +|.. .+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~---~---------~~~~~~~----~~~~-~~ 62 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK---D---------PDETVEE----IMSK-DL 62 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc---C---------ccccHHH----hCCC-CC
Confidence 45788999999999999998888889999985 799999999998752 1 2345777 6765 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus 63 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 63 VVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred eEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 89999999999999999999999999997 789999999999864
No 167
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.14 E-value=7.2e-10 Score=90.27 Aligned_cols=100 Identities=16% Similarity=0.336 Sum_probs=87.1
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCC
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 287 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~ 287 (438)
....+.+++++.++.+.|.+.+...+||+|+. .++++|+++..|+.+.... +|.. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------~m~~-~ 60 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------YIDP-S 60 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------hccC-C
Confidence 46788999999999999999989999999972 2899999999999775531 2454 7
Q ss_pred ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred CceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 88999999999999999999999999996 789999999999864
No 168
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.12 E-value=5.4e-10 Score=114.34 Aligned_cols=112 Identities=23% Similarity=0.436 Sum_probs=97.8
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCC--CCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~--~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~ 286 (438)
.+++++++++++.+++++|.+++++++||+|++. ++++|+||.+|+..... ...++.+ +|++.
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-----------~~~~V~d----vm~~~ 152 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-----------KGKPVSE----VMTRE 152 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-----------CCCCHHH----hhCCC
Confidence 5789999999999999999999999999999752 58999999999964211 2357888 77723
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
+++++.+++++.++++.|.+++...+||+|+ +|+++|+||.+|++..+.
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence 7999999999999999999999999999998 899999999999998754
No 169
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=1.2e-09 Score=94.10 Aligned_cols=115 Identities=23% Similarity=0.351 Sum_probs=92.6
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC-CCc-c--------------------
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG-RDW-F-------------------- 267 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~-~~~-~-------------------- 267 (438)
+++++.+++++.++++.|.+.++..+||+|+ ++++|+++..|+.+++..... ... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 4778999999999999999999999999996 799999999999887753210 000 0
Q ss_pred ----cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 268 ----DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 268 ----~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
......++.+ +|.. ++.++.+++++.+++..|.+.+.+.+||++. ++++|+++.+|++.
T Consensus 80 ~~~~~~~~~~~v~~----~~~~-~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRD----IMTK-KVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHH----HcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 0012334556 5665 7899999999999999999999999999984 89999999999863
No 170
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.11 E-value=1.2e-09 Score=112.70 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=100.9
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
+...+++++|. .++.++.+++++.++++.|.+++++.+||+|++ ++++|+||..|+.+.+.... . ....
T Consensus 332 l~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~--~----~~~~ 400 (454)
T TIGR01137 332 LKNATVKDLHL----PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGK--A----NPDD 400 (454)
T ss_pred hccCCHHHhCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccC--C----CcCC
Confidence 45567889998 779999999999999999999999999999976 79999999999998765421 0 0234
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 335 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l 335 (438)
++.+ +|.+ ++.++++++++.++++.|.+++ .++|++ +++++|+||.+|++..+
T Consensus 401 ~v~~----im~~-~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 AVSK----VMSK-KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CHHH----hcCC-CCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 6788 7876 7889999999999999998764 345554 78999999999998875
No 171
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.09 E-value=1.2e-09 Score=93.12 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=82.2
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc--------ccCcHHHHhcccCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF--------RQLTVRDFMNAVVP 358 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~--------~~~~v~~~m~~~~~ 358 (438)
++.++.+++++.++++.|.+++++.+||+|+ +|+++|++|..|++..+......... ....+.++|....-
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 5788999999999999999999999999997 79999999999999876532221000 01124455531000
Q ss_pred CCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC
Q 013669 359 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400 (438)
Q Consensus 359 ~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g 400 (438)
. .....+++++++++++.+|++.|.+++++++||+|+.+
T Consensus 81 ~---~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 81 Y---GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred h---cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 0 00003789999999999999999999999999998764
No 172
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.08 E-value=6e-10 Score=99.89 Aligned_cols=133 Identities=15% Similarity=0.335 Sum_probs=115.6
Q ss_pred ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
....+++ +|-+ ...+++..+.++.+++..+.+...+++||+.++.+.+.|++-.+||+.++..... ...+
T Consensus 65 adl~vrD----iMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~-----~F~i 135 (293)
T COG4535 65 ADLRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE-----PFDI 135 (293)
T ss_pred HHhhHhh----hcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc-----cccH
Confidence 4557788 6655 3678999999999999999999999999998767889999999999998765322 2357
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccc
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN 426 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~ 426 (438)
++++. |.+.++++-.+...++-+..++.|-..|||+-| .+-|.||..||+..++++..+.|++
T Consensus 136 ~~lLR-------------Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfG-gVsGLVTIEDiLEqIVGdIEDE~De 198 (293)
T COG4535 136 KELLR-------------PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFG-GVSGLVTIEDILEQIVGDIEDEYDE 198 (293)
T ss_pred HHhcc-------------cceecccchhHHHHHHHHHhhcCceEEEEeccC-CeeeeEEHHHHHHHHhcccccccch
Confidence 77775 889999999999999999999999999999998 9999999999999999988887765
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=2.6e-09 Score=86.72 Aligned_cols=104 Identities=27% Similarity=0.440 Sum_probs=88.5
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 289 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv 289 (438)
++.++.++.++.+++..|.+.+...+||++++ ++++|+++..++.+.. ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------------~~~~~~~----~~~~-~~~ 63 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------------EEEQLAL----LMTR-DPP 63 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------------ccchHHH----HhcC-CCc
Confidence 47788999999999999998889999999987 8999999999996521 1124555 5665 788
Q ss_pred EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
++.+++++.+++..|.+++...+||++ +++++|+++..|++.
T Consensus 64 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~ 105 (106)
T cd04638 64 TVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105 (106)
T ss_pred eECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence 899999999999999999999999998 479999999999864
No 174
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=2.6e-09 Score=88.49 Aligned_cols=113 Identities=16% Similarity=0.272 Sum_probs=90.0
Q ss_pred CceEEeCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669 210 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 288 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~-i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v 288 (438)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..|+.+.+....... .....++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~---~~~~~~v~~----~~~~-~~ 71 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRA---LYGKKPVSE----VMDP-DP 71 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHH---HHcCCcHHH----hcCC-Cc
Confidence 4667899999999999998876 889999997 79999999999987654321000 013446777 6776 78
Q ss_pred eEEcCCCcHHHHHHHHHHcCCc---eEeEEeCCCCeEEEEEeHHHHHH
Q 013669 289 ITIQSNELILEAFKRMKDNNIG---GIPVVEGQQKKIVGNVSIRDIRH 333 (438)
Q Consensus 289 v~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~~~~lvGiIs~~Dl~~ 333 (438)
.++.+++++.+++..|.+++.. ..+|+++ +|+++|+||..|++.
T Consensus 72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred EEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 9999999999999999988753 3467876 799999999999864
No 175
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.05 E-value=1.3e-09 Score=103.23 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=106.2
Q ss_pred CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669 197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 276 (438)
Q Consensus 197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~ 276 (438)
..|.|+|... .....+.+++++.+-.++-.+.+..++||+|.. .+++|++|.+|+.... .+.++.
T Consensus 188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~------------~~t~ie 252 (432)
T COG4109 188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKK------------PSTTIE 252 (432)
T ss_pred eeHHHhcccc--ccceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCC------------CCccHH
Confidence 5688888744 667889999999999999999999999999987 7999999999996521 456777
Q ss_pred ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
. +|++ +++++.+.+++..+.+.|.=.++.-+||+++ +.+++|+||++|++..+.
T Consensus 253 K----VMtk-np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq 306 (432)
T COG4109 253 K----VMTK-NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred H----Hhcc-CCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence 7 8997 8999999999999999999999999999998 899999999999998875
No 176
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.04 E-value=1.4e-09 Score=111.99 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=96.7
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCC-
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS- 285 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~- 285 (438)
.+++++++++++.+++++|.+++++.+||+|++ +++++|++|..|+.. .. . ...++++ +|++
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~-~~-~---------~~~~V~d----iMt~~ 168 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF-VK-D---------KSTPVSE----VMTPR 168 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh-cc-c---------CCCCHHH----hhCCc
Confidence 568899999999999999999999999999873 278999999999862 11 1 2457888 7864
Q ss_pred CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
.+++++.+++++.+++++|.+++...+||+|+ +++++|+||.+|++....
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhccc
Confidence 36899999999999999999999999999998 899999999999987753
No 177
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.4e-09 Score=109.54 Aligned_cols=126 Identities=21% Similarity=0.386 Sum_probs=108.7
Q ss_pred ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc-----CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669 271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~ 345 (438)
...++.. .|+. .++++.++.|+.+++..+++. .+..+.|+|. +++++|+++.++++.. ++
T Consensus 130 ~e~taG~----~Mt~-e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a--~~------- 194 (451)
T COG2239 130 PEDTAGR----IMTT-EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTA--EP------- 194 (451)
T ss_pred Chhhhhc----ccee-eeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcC--Cc-------
Confidence 4556666 7887 899999999999999999854 3678999998 8899999999999765 32
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcc
Q 013669 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL 424 (438)
Q Consensus 346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~ 424 (438)
+.+++++|.. .++++.+++...++.+.+.+++.-.+||||+++ +++|+||..|++..+-.|....+
T Consensus 195 ~~~i~~im~~------------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~-~LiG~itiDDiidvi~eEa~eDi 260 (451)
T COG2239 195 DELLKDLMED------------DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDN-RLIGIITIDDIIDVIEEEATEDI 260 (451)
T ss_pred HhHHHHHhcc------------cceeecccCCHHHHHHHHHHhCCeecceECCCC-ceeeeeeHHHHHHHHHHHHHHHH
Confidence 3479999985 689999999999999999999999999999998 99999999999998875544433
No 178
>PRK11573 hypothetical protein; Provisional
Probab=99.02 E-value=5e-09 Score=105.94 Aligned_cols=134 Identities=14% Similarity=0.156 Sum_probs=110.5
Q ss_pred hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc
Q 013669 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 267 (438)
Q Consensus 188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~ 267 (438)
+..--.+...+++++|... .+++.++.++++.++++.+.+++++++||++++..+++|++..+|++..+.....
T Consensus 178 i~~vl~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---- 251 (413)
T PRK11573 178 LLSVLDLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---- 251 (413)
T ss_pred HHHHhccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc----
Confidence 3444567889999999844 8999999999999999999999999999998766789999999999876543210
Q ss_pred cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 268 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 268 ~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
.....+.+ ++. ++..++++.++.++++.|.+++.+-..|+|+ .|...|+||..|++.-+.
T Consensus 252 --~~~~~l~~----~~r--~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeiv 311 (413)
T PRK11573 252 --FTKENMLR----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV 311 (413)
T ss_pred --CCHHHHHh----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHh
Confidence 01122334 343 6889999999999999999999999999998 799999999999998875
No 179
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.98 E-value=6.9e-09 Score=88.46 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=79.5
Q ss_pred CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC-ccc----ccccCCccccc-----
Q 013669 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WFD----IIASQPISDLG----- 279 (438)
Q Consensus 210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~-~~~----~l~~~~v~~l~----- 279 (438)
.++++.+++++.+|++.|.++++.++||+|++ ++++|++|..|+++++....... ... ......+.++-
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 47889999999999999999999999999987 89999999999998875431100 000 00011122310
Q ss_pred cCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeC
Q 013669 280 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 317 (438)
Q Consensus 280 l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 317 (438)
...|.. +++++.+++++.+|++.|.+++++++||+++
T Consensus 81 ~~~~~~-~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 81 YGGQEC-GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hcccCC-CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 001334 7899999999999999999999999999985
No 180
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.97 E-value=3.3e-09 Score=101.50 Aligned_cols=129 Identities=22% Similarity=0.357 Sum_probs=109.5
Q ss_pred ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
...+|+| +|.+ .++..+..+++..++++.+....+.++|+..++-+.++|++..+|+++++.+.+.+ +-
T Consensus 198 e~~tV~D----IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~------~k 267 (423)
T COG4536 198 ENLTVSD----IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF------TK 267 (423)
T ss_pred ccceeee----eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc------cH
Confidence 4568899 7866 36889999999999999999999999999976557899999999999998865432 23
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~ 420 (438)
.++++. ..+|.+++..+++.+-+..|.+++-|.-.|||+.| .+.|+||+.||++.++++-
T Consensus 268 ~d~~~~----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG-~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 268 EDILRA----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG-DIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred hHHHHH----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC-cEEeeeeHHHHHHHHhccc
Confidence 344432 13789999999999999999999999999999998 9999999999999999743
No 181
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.97 E-value=2.4e-09 Score=76.84 Aligned_cols=56 Identities=27% Similarity=0.564 Sum_probs=52.3
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417 (438)
Q Consensus 349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~ 417 (438)
|+++|.+ +++++++++++.++++.|.+++++++||+|++| +++|+||.+||++++.
T Consensus 1 v~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~-~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP------------PPITVSPDDSLEEALEIMRKNGISRLPVVDEDG-KLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS------------SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTS-BEEEEEEHHHHHHHHH
T ss_pred CeECCcC------------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC-EEEEEEEHHHHHhhhh
Confidence 4678875 899999999999999999999999999999998 9999999999999875
No 182
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.90 E-value=5.8e-08 Score=99.02 Aligned_cols=135 Identities=12% Similarity=0.204 Sum_probs=112.0
Q ss_pred hhhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC
Q 013669 186 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD 265 (438)
Q Consensus 186 ~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~ 265 (438)
..+..--.+...+++++|.. +..+..++.+.++.++.+.+.+.+++++||++++.+.++|++..+|++..+.....
T Consensus 195 ~mi~~v~~l~~~~v~eiMtP--R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 195 EMINNVLDLDDRTVREIMTP--RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred HHHHHHhccCCcEeeeEeee--cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--
Confidence 33444556788999999994 48899999999999999999999999999999555789999999999998765421
Q ss_pred cccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669 266 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337 (438)
Q Consensus 266 ~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~ 337 (438)
...... .+. ++..++++.++.++++.|++.+.+-..|+|+ -|.+.|+||..|++..+..
T Consensus 271 ------~~~~~~----~~~--~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 271 ------DLDLRV----LVR--PPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ------ccchhh----ccc--CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence 011111 122 6899999999999999999999999999998 7999999999999998863
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.82 E-value=1.9e-08 Score=72.05 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=52.2
Q ss_pred hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 013669 199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 259 (438)
Q Consensus 199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~ 259 (438)
|+++|. .+++++++++++.++++.|.+++++++||+|++ ++++|++|.+|+++++.
T Consensus 1 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT----PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB----SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CeECCc----CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 567888 789999999999999999999999999999988 89999999999999875
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.75 E-value=5e-07 Score=89.84 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=112.8
Q ss_pred CEEEEEcCCCCCEEEEEeHHHHHHHh-----hcCCCC-CcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHH
Q 013669 233 RNVPIIEPGTPDIKNYITQSAVVQGL-----EGCKGR-DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 306 (438)
Q Consensus 233 ~~lpVvd~~~~~v~Giit~~Di~~~l-----~~~~~~-~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~ 306 (438)
.++.++++ |+++..-+..+++..- ....+. .....+....+.+ .+.. ......++.+..++++.|..
T Consensus 198 drI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~ 270 (363)
T TIGR01186 198 DRIVIMKA--GEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQ----RMNT-GPITKTADKGPRSALQLMRD 270 (363)
T ss_pred CEEEEEeC--CEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhh----hccc-cceeecCCCCHHHHHHHHHh
Confidence 56777765 7888887877775421 100000 0000011111111 1222 33456677789999999999
Q ss_pred cCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHH
Q 013669 307 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA 386 (438)
Q Consensus 307 ~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~ 386 (438)
.+...+.|++. ++++.|.++..++..++.. ..++.+.+.. ...++.++++|.+++..|.
T Consensus 271 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 271 ERVDSLYVVDR-QNKLVGVVDVESIKQARKK--------AQGLQDVLID------------DIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred cCCceEEEEcC-CCCEEEEEeHHHHHHHhhc--------CCchhhhhcc------------CCceECCCCcHHHHHHHHH
Confidence 99999999997 8999999999999876542 2246777764 6788999999999999999
Q ss_pred hCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 387 SKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 387 ~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
+++.. +||+|++| +++|+||..++++.+..
T Consensus 330 ~~~~~-~~v~~~~~-~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 330 KAGIK-VPVVDEDQ-RLVGIVTRGSLVDALYD 359 (363)
T ss_pred hCCCC-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence 99988 99999998 99999999999999975
No 185
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.71 E-value=3e-08 Score=89.10 Aligned_cols=137 Identities=11% Similarity=0.194 Sum_probs=114.2
Q ss_pred hhhhhhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 013669 183 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 262 (438)
Q Consensus 183 ~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~ 262 (438)
+-...+..--.+...+|+|||-.. .+.+++..+.++.+++..+.+...+++||+.++...+.||+-.+|+++++....
T Consensus 53 dt~~mlEGvm~iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~ 130 (293)
T COG4535 53 DTLDMLEGVMDIADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA 130 (293)
T ss_pred hHHHHHHHHHHHHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc
Confidence 334444444445667899999844 789999999999999999999999999999888789999999999999986542
Q ss_pred CCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 263 ~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
....+.+ +.. +.+.|+++-.+...++-++.++.+..+|+|+ -|.+-|++|..|++..+.
T Consensus 131 --------~~F~i~~----lLR--Pav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 131 --------EPFDIKE----LLR--PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIV 189 (293)
T ss_pred --------ccccHHH----hcc--cceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHh
Confidence 2235566 332 6899999999999999999999999999998 789999999999998875
No 186
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.2e-07 Score=95.87 Aligned_cols=127 Identities=13% Similarity=0.295 Sum_probs=109.3
Q ss_pred hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 013669 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 262 (438)
Q Consensus 188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~ 262 (438)
+.+...|...+++.+|+ .+++.+.++.|+.+++..+.+. .+..+.|+|.+ +++.|+++.++++.. .
T Consensus 123 v~~~l~y~e~taG~~Mt----~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll~a---~- 193 (451)
T COG2239 123 VRQLLSYPEDTAGRIMT----TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLLTA---E- 193 (451)
T ss_pred HHHhcCCChhhhhccce----eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHhcC---C-
Confidence 33445566778999999 7799999999999999999854 46779999988 799999999998641 1
Q ss_pred CCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669 263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337 (438)
Q Consensus 263 ~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~ 337 (438)
.+.++++ +|.+ .++++.+++.-+++.+.+.+++.-++||||+ +++++|+||..|++..+.+
T Consensus 194 --------~~~~i~~----im~~-~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 --------PDELLKD----LMED-DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred --------cHhHHHH----Hhcc-cceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHHH
Confidence 4567888 7887 6999999999999999999999999999998 8999999999999988753
No 187
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.8e-07 Score=88.55 Aligned_cols=168 Identities=14% Similarity=0.178 Sum_probs=126.1
Q ss_pred CCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013669 192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 271 (438)
Q Consensus 192 ~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~ 271 (438)
..+...+|+|+|... ..+..++.+++..+.++.+...-..++|++.++-..++|++..+|+++++.++.. + .
T Consensus 195 LDLe~~tV~DIMvpR--~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~---~---~ 266 (423)
T COG4536 195 LDLENLTVSDIMVPR--NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE---F---T 266 (423)
T ss_pred cccccceeeeeeccc--cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc---c---c
Confidence 446668999999844 8899999999999999999999999999998876789999999999999987632 1 1
Q ss_pred cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 351 (438)
Q Consensus 272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~ 351 (438)
...+.. .. .++..+++.+++.+-+..|.+++-+.-.|||+ -|.+.|++|..|++.-+.-. |.+.......+
T Consensus 267 k~d~~~----~a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVGd--ftde~d~~~~e 337 (423)
T COG4536 267 KEDILR----AA--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVGD--FTDEHDTLAKE 337 (423)
T ss_pred HhHHHH----Hh--cCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhcc--ccccCcccchh
Confidence 112222 11 36899999999999999999999888889998 89999999999999876531 21222223333
Q ss_pred HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHH
Q 013669 352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA 386 (438)
Q Consensus 352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~ 386 (438)
+..+ ...-+.++.+.++.+.-+.|-
T Consensus 338 v~~q----------~dgs~iidGs~~iRdlNr~l~ 362 (423)
T COG4536 338 VIPQ----------SDGSFIIDGSANVRDLNRALD 362 (423)
T ss_pred hccc----------CCCcEEEeCCCcHHHHHHhcC
Confidence 3332 124466777777777655543
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=9.1e-07 Score=89.07 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=90.4
Q ss_pred EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCe
Q 013669 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPI 370 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~ 370 (438)
..++.+..+++..|...+...+.|+|. +++++|+++..++...... ..++.+.+.. ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~ 348 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ--------QQGLDAALID------------APL 348 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc--------CCchhhhhcc------------CCc
Confidence 446678899999999999999999998 8999999999999776432 2246666653 678
Q ss_pred EeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 371 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 371 ~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
++.++++|.+++..|.+.... +||||++| +++|+||..++++.+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQ-QYVGIISKGMLLRALDR 394 (400)
T ss_pred eeCCCCCHHHHHHHHHhCCCc-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence 999999999999999998766 99999998 99999999999999975
No 189
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.1e-07 Score=91.92 Aligned_cols=109 Identities=27% Similarity=0.348 Sum_probs=95.8
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 364 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 364 (438)
+++.++|+.++.++++....+++..+||.++. ..+++|+||.+|+-.+ .+ ...++.++|..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~-------~~~~~~~vmt~--------- 179 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED-------NSLLVSDVMTK--------- 179 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hc-------ccchhhhhccc---------
Confidence 57888999999999999999999999999731 3689999999999877 21 24578899986
Q ss_pred CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
++++.....+|.++-+.|.+.+...+||||++| +++.+|+++||.+.-
T Consensus 180 ---~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 180 ---NPVTGAQGITLKEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKNR 227 (503)
T ss_pred ---ccccccccccHHHHHHHHHhhhcCCcceeccCC-ceeeeeehhhhhhhc
Confidence 558999999999999999999999999999998 999999999998853
No 190
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.36 E-value=7.9e-06 Score=81.33 Aligned_cols=108 Identities=18% Similarity=0.338 Sum_probs=91.2
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 290 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~ 290 (438)
.....++.+..+++..|...+...+.|+|.+ +++.|+++..++..++... ..+.+ .+.. .+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~-~~~~ 314 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----------QGLQD----VLID-DIYT 314 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----------Cchhh----hhcc-CCce
Confidence 3456677789999999999999999999987 8999999999997766432 23555 4544 6778
Q ss_pred EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337 (438)
Q Consensus 291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~ 337 (438)
+.+++++.+++..|.+++.. +||+|+ +|+++|+|+..+++..+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 315 VDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 99999999999999999998 999998 8999999999999998763
No 191
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.35 E-value=1.1e-06 Score=85.17 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=95.4
Q ss_pred CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669 209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 286 (438)
Q Consensus 209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~ 286 (438)
.+++++.|+.++.++++....+++..+||.++. .++++|+||.+|+- ++.+ ....+.+ +|++
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~~~----------~~~~~~~----vmt~- 179 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FLED----------NSLLVSD----VMTK- 179 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hhhc----------ccchhhh----hccc-
Confidence 457889999999999999999999999999754 36899999999983 3422 3467788 7887
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 335 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l 335 (438)
+.++.+...++.++-+++.+.+-..+||||+ +|+++.+|++.||.+.-
T Consensus 180 ~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 180 NPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNR 227 (503)
T ss_pred ccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhc
Confidence 5689999999999999999999999999998 89999999999998764
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1.3e-05 Score=80.75 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=89.3
Q ss_pred EEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEc
Q 013669 213 PVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQ 292 (438)
Q Consensus 213 ~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~ 292 (438)
...++.+..+++..|...+...+.|+|.+ +++.|+++..++.+..... ..+.+ .+.. ...++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~-~~~~~~ 351 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----------QGLDA----ALID-APLAVD 351 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----------Cchhh----hhcc-CCceeC
Confidence 34467789999999999999999999987 8999999999997665421 23444 3444 678899
Q ss_pred CCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013669 293 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 338 (438)
Q Consensus 293 ~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~ 338 (438)
+++++.+++..|.+.... +||+|+ +|+++|+|+..+++..+...
T Consensus 352 ~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 352 AQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 999999999999997766 999998 89999999999999988643
No 193
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.21 E-value=2.6e-06 Score=86.60 Aligned_cols=149 Identities=23% Similarity=0.304 Sum_probs=107.8
Q ss_pred cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC----CeEEEEEeHHHHHHHhcCCccccc----
Q 013669 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ----KKIVGNVSIRDIRHLLLKPELFSN---- 343 (438)
Q Consensus 272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~----~~lvGiIs~~Dl~~~l~~~~~~~~---- 343 (438)
+..+++ +|++ +++++..-+.+..+.+.+....++.+||+|+.. +++.|+|-++.++.++.+....+.
T Consensus 581 ~L~a~e----v~~~-pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 581 NLTAGE----VMSK-PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhHhh----hccC-CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 456677 7887 999999999999999999999999999998532 478999999999988865322211
Q ss_pred -----cccCcHHHHhcccC--CCCC----------CCC--CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEE
Q 013669 344 -----FRQLTVRDFMNAVV--PTTP----------DSG--KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404 (438)
Q Consensus 344 -----~~~~~v~~~m~~~~--~~~~----------~~~--~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lv 404 (438)
....+.+|+..+.. ++.+ +.+ ....|.++.+++++..+..++++-+.+|+.||+..+ +++
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-~~~ 734 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-RVV 734 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCC-cee
Confidence 11123333332100 0000 001 234678999999999999999999999999999988 899
Q ss_pred EEEeHHHHHHHhhcCCCCcccc
Q 013669 405 GVITLRDVISCFIFEPPNHLDN 426 (438)
Q Consensus 405 GvIT~~DIl~~l~~e~~~~~~~ 426 (438)
|++|++|++.+=..+...+.++
T Consensus 735 gilTR~D~~~~~~l~~~~~v~~ 756 (762)
T KOG0474|consen 735 GILTRKDLARYRILGLEPHVDE 756 (762)
T ss_pred EEEehhhhhhHHHhcccccccc
Confidence 9999999996544333334443
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=5.8e-06 Score=84.18 Aligned_cols=135 Identities=16% Similarity=0.264 Sum_probs=105.3
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCC----CCEEEEEeHHHHHHHhhcCCCC----C
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGCKGR----D 265 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~----~~v~Giit~~Di~~~l~~~~~~----~ 265 (438)
+.+.+++++|. .|+++++.-..+....+.+.....+.+||+|+.. +++.|+|-.+.++..+...... .
T Consensus 579 mr~L~a~ev~~----~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 579 MRNLTAGEVMS----KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hhhhhHhhhcc----CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 45678899999 7999999999999999999999999999999752 4789999999998777532110 0
Q ss_pred c--c--------ccc--ccCCcccccc------------CCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCe
Q 013669 266 W--F--------DII--ASQPISDLGL------------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK 321 (438)
Q Consensus 266 ~--~--------~~l--~~~~v~~l~l------------~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~ 321 (438)
. . +++ ...+++++.+ ++|++ .+.++.+++++..++.++++-+.+++.|++. .+.
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~-sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~ 732 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP-SPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNR 732 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC-CCcccCcccchHHHHHHHHHhcceeEEEecC-CCc
Confidence 0 0 000 0112333221 46777 7899999999999999999999999999998 778
Q ss_pred EEEEEeHHHHHHH
Q 013669 322 IVGNVSIRDIRHL 334 (438)
Q Consensus 322 lvGiIs~~Dl~~~ 334 (438)
++|++|++|+...
T Consensus 733 ~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 733 VVGILTRKDLARY 745 (762)
T ss_pred eeEEEehhhhhhH
Confidence 8999999999754
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=1.7e-05 Score=65.39 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=50.2
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414 (438)
Q Consensus 347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~ 414 (438)
.++.++|.. ++.++.+++++.++++.|.+.+.+.+||+|++| +++|+||..||.+
T Consensus 58 ~~v~dim~~------------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~-~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR------------KPVTARPNDPLREALNLMHEHNIRTLPVVDDDG-TPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC------------CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHhhc
Confidence 568899874 788999999999999999999999999999988 9999999999864
No 196
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.94 E-value=3e-05 Score=52.18 Aligned_cols=47 Identities=30% Similarity=0.511 Sum_probs=43.2
Q ss_pred CeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 369 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 369 ~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
+.++.+++++.++++.|.+.+.+++||+++++ +++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEG-RLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCC-eEEEEEEHHHHHHhh
Confidence 57789999999999999999999999999887 999999999998765
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.72 E-value=8.4e-05 Score=61.15 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=49.8
Q ss_pred CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 013669 197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 256 (438)
Q Consensus 197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~ 256 (438)
.+++++|. .++..+.+++++.++++.|.+++.+.+||+|++ ++++|++|..|+.+
T Consensus 58 ~~v~dim~----~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVIN----RKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcC----CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 56889998 678999999999999999999999999999987 89999999999853
No 198
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00038 Score=71.41 Aligned_cols=142 Identities=10% Similarity=0.188 Sum_probs=100.6
Q ss_pred hhhccCCCCCCchhhhccccCCC-CceEEeCC-CCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCC
Q 013669 187 VILQEEPFKSTTVRSIIKSYRWA-PFLPVATD-DSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKG 263 (438)
Q Consensus 187 ~l~~~~~~~~~~v~di~~~~~~~-~~i~v~~~-~sl~~al~~m~~~~i~~lpVv-d~~~~~v~Giit~~Di~~~l~~~~~ 263 (438)
.+.....+.++-..++|..-+.+ +++.+..+ .++.+...+|.+..++..||+ ++++.+++|++..+|+.-.+.....
T Consensus 533 ~l~~k~e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~ 612 (696)
T KOG0475|consen 533 FLDSKSEFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARK 612 (696)
T ss_pred CcccccccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcc
Confidence 34444555544455666644334 57777665 899999999999999988876 4555789999999999766653211
Q ss_pred CCcccc----cc-------------cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEE
Q 013669 264 RDWFDI----IA-------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 326 (438)
Q Consensus 264 ~~~~~~----l~-------------~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiI 326 (438)
.+.+.. .. ...+++ +|.. .++++....+.+.+++++.+-+.+.+.|.. +|++.|+|
T Consensus 613 ~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~----il~~-tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Gii 685 (696)
T KOG0475|consen 613 IQSFIVTTSIYFNDPSPSAVAGIPSRLDLKD----ILDM-TPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGII 685 (696)
T ss_pred ccccceecccccCCCCccccCCCCCCcCcee----eccC-CcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeee
Confidence 110000 00 112223 4555 789999999999999999999999888887 79999999
Q ss_pred eHHHHHHHh
Q 013669 327 SIRDIRHLL 335 (438)
Q Consensus 327 s~~Dl~~~l 335 (438)
|.+|++...
T Consensus 686 tkkd~l~~~ 694 (696)
T KOG0475|consen 686 TKKDCLRHT 694 (696)
T ss_pred ehHHHHHhh
Confidence 999998763
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00066 Score=69.69 Aligned_cols=127 Identities=19% Similarity=0.285 Sum_probs=86.5
Q ss_pred CceEEcCC-CcHHHHHHHHHHcCCceEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccCCCCC--
Q 013669 287 EVITIQSN-ELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVVPTTP-- 361 (438)
Q Consensus 287 ~vv~v~~~-~~l~~a~~~m~~~~~~~lpVv-d~~~~~lvGiIs~~Dl~~~l~~~~~~~~-~~~~~v~~~m~~~~~~~~-- 361 (438)
...+++.+ .++.+...+|.+..++.+||+ ++++..++|++.++|+...+.+...... ..+... .+.....+...
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~ 635 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGI 635 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCC
Confidence 35555555 899999999999999999887 3336789999999999776653211110 001111 11111100000
Q ss_pred ----C--CCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 362 ----D--SGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 362 ----~--~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
+ ....-.++++...++...+++++.+-+++.+.| +++| ++.|+||.+|++++.
T Consensus 636 ~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G-~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 636 PSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNG-ILLGIITKKDCLRHT 694 (696)
T ss_pred CCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCC-eeEeeeehHHHHHhh
Confidence 0 012246899999999999999999999988865 5566 999999999999864
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.52 E-value=0.00034 Score=46.85 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=42.6
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 258 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l 258 (438)
+..+.+++++.++++.|.+++.+.+||++++ ++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 5678999999999999999999999999987 7999999999997754
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.97 E-value=0.016 Score=58.18 Aligned_cols=144 Identities=11% Similarity=0.089 Sum_probs=88.5
Q ss_pred CEEEEEcCCCCCEEEEEeHHHHHHH-----hhcCCCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc
Q 013669 233 RNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 307 (438)
Q Consensus 233 ~~lpVvd~~~~~v~Giit~~Di~~~-----l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~ 307 (438)
.++.++++ |+++..-+..+++.. .... ....+...-.+..+ +|.+ ...+...+.. .+++. +
T Consensus 233 DrI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~--~~~~~~~~~l~a~~----~m~~--~~~~~~~~~~-~~~~~---~ 298 (382)
T TIGR03415 233 NRIAIMEG--GRIIQHGTPEEIVLNPANDYVADF--VAHTNPLNVLTARS----LMRP--LTDLEHVDGG-WCVSD---R 298 (382)
T ss_pred CEEEEEEC--CEEEEecCHHHHhhCcchHHHHHH--hcccCcccceeHHH----Hhcc--cccccccCcc-hhhhh---c
Confidence 45666654 678777777776431 1110 00001112223344 5643 3333222222 44433 7
Q ss_pred CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHh
Q 013669 308 NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS 387 (438)
Q Consensus 308 ~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~ 387 (438)
+.+.+.|+| . |+++..+...+.... ...++.+ +.. ...++++++++.+++..+.+
T Consensus 299 ~~~~~~~~~--~----~~~~~~~~~~~~~~~------~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~ 353 (382)
T TIGR03415 299 RDTWLFTID--K----QVRRRDAKLPVQAWA------AEQEVES-LEA------------APTVINPDTLMRDVLAARHR 353 (382)
T ss_pred ccceeEeec--c----ceecccchHhHhhcc------cccchhh-hcc------------cCcccCCCCcHHHHHHHHhc
Confidence 788889998 3 788877765543311 1223555 332 67889999999999999998
Q ss_pred CCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 388 KSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 388 ~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
.+. -++|+|+ | +++|+|+..+++..+..
T Consensus 354 ~~~-~~~v~~~-~-~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 354 TGG-AILLVEN-G-RIVGVIGDDNIYHALLG 381 (382)
T ss_pred CCC-CeEEeeC-C-eEEEEEeHHHHHHHHhc
Confidence 874 4889886 6 99999999999998863
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.38 E-value=0.006 Score=58.36 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.4
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccc---ccCCccccccCCCCCCC-ceEEcCC
Q 013669 219 SMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII---ASQPISDLGLPFMSSDE-VITIQSN 294 (438)
Q Consensus 219 sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l---~~~~v~~l~l~~m~~~~-vv~v~~~ 294 (438)
.+.+|+++ -+++.+..+ |+++.+=|..+|+..-...+-...+..+ .-.+..+ +|...+ ...-.+.
T Consensus 224 DLdEAlri-----G~rIaimkd--G~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~----IM~~~~~~~~~~~~ 292 (386)
T COG4175 224 DLDEALRI-----GDRIAIMKD--GEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKD----IMRRPDLLIRKTPG 292 (386)
T ss_pred CHHHHHhc-----cceEEEecC--CeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHH----hhcccccccccccc
Confidence 45666632 245666664 8999999999987432211101111111 1223344 454211 1122222
Q ss_pred CcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCC
Q 013669 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKL 374 (438)
Q Consensus 295 ~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~ 374 (438)
..-..+++.+.......+.+++. .++.+|+++..++... .+. .++.++..
T Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~-----------------~~~------------~~~~~v~~ 342 (386)
T COG4175 293 DGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA-----------------ALI------------DDVLTVDA 342 (386)
T ss_pred cccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-----------------ccc------------ccccccCc
Confidence 33346778888888777777775 7889999998886543 122 26778999
Q ss_pred CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 375 ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 375 ~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
++++.+.+..+.+... .++|+|+++ +++|+|+...++.++..
T Consensus 343 d~~~~~~~~~~~~~~~-p~aVvde~~-r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 343 DTPLSEILARIRQAPC-PVAVVDEDG-RYVGIISRGELLEALAR 384 (386)
T ss_pred cchHHHHHHHHhcCCC-ceeEEcCCC-cEEEEecHHHHHHHHhc
Confidence 9999999999888875 578999998 99999999999999875
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.01 E-value=0.18 Score=50.75 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~ 273 (438)
.+-.++.++|. ........+.+ .+++. ++...+.|+|. |+++..+.......+. ..
T Consensus 271 ~~~l~a~~~m~----~~~~~~~~~~~--~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~ 326 (382)
T TIGR03415 271 LNVLTARSLMR----PLTDLEHVDGG--WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAA---------EQ 326 (382)
T ss_pred ccceeHHHHhc----ccccccccCcc--hhhhh---cccceeEeecc------ceecccchHhHhhccc---------cc
Confidence 34456778885 21222222222 34433 67888899885 6787777655443221 12
Q ss_pred CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
.+.++ .. .+.++++++++.+++..+.+.+.. ++|+| +|+++|+|+..+++..+.
T Consensus 327 ~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVESL-----EA-APTVINPDTLMRDVLAARHRTGGA-ILLVE--NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhhh-----cc-cCcccCCCCcHHHHHHHHhcCCCC-eEEee--CCeEEEEEeHHHHHHHHh
Confidence 33331 22 577889999999999999887754 88888 599999999999998864
No 204
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.84 E-value=0.058 Score=51.84 Aligned_cols=111 Identities=16% Similarity=0.255 Sum_probs=81.5
Q ss_pred CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669 196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 275 (438)
Q Consensus 196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v 275 (438)
-.+..++|..+ .+.+.-.+...-..++..+.......+.+++.. ++.+|+++..+++..
T Consensus 273 VltA~~IM~~~--~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~~~g~v~~~~~~~~------------------ 331 (386)
T COG4175 273 VLTAKDIMRRP--DLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-NKFVGVVSIDSLVKA------------------ 331 (386)
T ss_pred eeeHHHhhccc--ccccccccccccchhhhhhhhccchhhHHHhcc-CceeeEEeccchhcc------------------
Confidence 35677888732 333333344455567888887777777777754 779999988776542
Q ss_pred cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669 276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336 (438)
Q Consensus 276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~ 336 (438)
. +.. .+.++..++++.+.+..+.+... .++|+|+ +++++|+++...++.++.
T Consensus 332 -~-----~~~-~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 -A-----LID-DVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALA 383 (386)
T ss_pred -c-----ccc-cccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHh
Confidence 1 122 67788899999999988887664 5899998 899999999999999875
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.53 E-value=0.28 Score=52.08 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=51.3
Q ss_pred CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCC-CCEEEEEeHHHHHHHhhcC
Q 013669 197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQGLEGC 261 (438)
Q Consensus 197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~-~~v~Giit~~Di~~~l~~~ 261 (438)
..|.++|- +++..+..++|..+.-+.+....++.+|+||+.+ .-++|.|..+.+..++..+
T Consensus 588 v~VE~iMV----~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 588 VKVEHIMV----TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred EEeeeecc----ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 45678888 8899999999999999988877799999998753 3489999999999888653
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.58 E-value=0.58 Score=43.88 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=70.4
Q ss_pred CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC---------C-ccccccccCcHHHHhccc
Q 013669 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK---------P-ELFSNFRQLTVRDFMNAV 356 (438)
Q Consensus 287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~---------~-~~~~~~~~~~v~~~m~~~ 356 (438)
.++.|+.| +.+|+++- .++.|.+ +|+++-+-+..+++..-.+ . ..+..+....+.+.+...
T Consensus 188 TivfVTHD--idEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 188 TIVFVTHD--IDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEEecC--HHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 46666554 46777543 4688888 6999999998887643211 0 111222333445554421
Q ss_pred CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669 357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415 (438)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~ 415 (438)
.. . .--.........+++..+...+...+||+|++| +++|+||..+|+..
T Consensus 259 ~~--~------~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g-~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP--A------DGEPLLEGFVDRDALSDFLARGRSVLPVVDEDG-RPLGTVTRADLLDE 308 (309)
T ss_pred cc--c------cCCccccchhhHHHHHHHHhcCCceeEEECCCC-cEeeEEEHHHHhhh
Confidence 00 0 011233344455688888899999999999998 99999999999875
No 207
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=86.59 E-value=1.1 Score=46.71 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=85.0
Q ss_pred cCCccccccCCCCC-CCceEEcCCCcHH-HHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669 272 SQPISDLGLPFMSS-DEVITIQSNELIL-EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349 (438)
Q Consensus 272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v 349 (438)
.+.+++ +|++ +.++.+..+..+. +......+++++++||.+.+....+|..=...+..+... +. .+...++
T Consensus 203 ek~~~e----vmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~-~~--~~~~~~v 275 (498)
T KOG2118|consen 203 EKLVGE----VMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQV-EV--PLEPLPV 275 (498)
T ss_pred HHHHHH----hccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcc-cc--ccccccc
Confidence 345555 5665 3566667777776 556667789999999998633334443222222222211 11 3345677
Q ss_pred HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418 (438)
Q Consensus 350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~ 418 (438)
.+++.. +...++.++++.+.++.+.+.+.|.+.|.+. . .-+++++..|+ .....
T Consensus 276 ~~~~~~------------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~-~~~~~~~l~~~-~~~~~ 329 (498)
T KOG2118|consen 276 SESALL------------RLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-H-VDIFVLTLEDL-EEVVK 329 (498)
T ss_pred hhhhcc------------ccccCCCcccHHHHHHHHhhhhceeEEEecC-C-cceeeEeccch-hhhcc
Confidence 888764 7888999999999999999999888877774 3 68999999998 55443
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.02 E-value=4.2 Score=38.34 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=66.2
Q ss_pred ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh-----hcCC--CCCcccccccCCccccccCCC
Q 013669 211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-----EGCK--GRDWFDIIASQPISDLGLPFM 283 (438)
Q Consensus 211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l-----~~~~--~~~~~~~l~~~~v~~l~l~~m 283 (438)
++.|. ..+.+|+++- .++.|.+. |+++.+-+..++++.- .... +...+..+...++.+. .+
T Consensus 189 ivfVT--HDidEA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~---~~ 256 (309)
T COG1125 189 IVFVT--HDIDEALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADA---VR 256 (309)
T ss_pred EEEEe--cCHHHHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHh---hc
Confidence 44444 3467787543 56888885 8999999987775421 1110 1112222233333331 11
Q ss_pred CCC--CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669 284 SSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 334 (438)
Q Consensus 284 ~~~--~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 334 (438)
+.. .--.+.......+++..+...+...+||+|+ +|+++|.+|..+++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 257 RGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE 308 (309)
T ss_pred ccccccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence 110 0111223344455777788888899999998 9999999999998754
No 209
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=66.67 E-value=8.9 Score=40.02 Aligned_cols=127 Identities=9% Similarity=0.090 Sum_probs=83.4
Q ss_pred ccCCCCCCchhhhccccCCCCceEEeCCCCHH-HHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc
Q 013669 190 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSML-SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 268 (438)
Q Consensus 190 ~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~-~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~ 268 (438)
....+....++++|..- ..+..++.+..+. +......+.++.++||.+.+....+|.+=....++++....
T Consensus 197 g~l~l~ek~~~evmtpi--~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~------ 268 (498)
T KOG2118|consen 197 GALELTEKLVGEVMTPI--EDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV------ 268 (498)
T ss_pred hhHHHHHHHHHHhccch--hhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc------
Confidence 33444556688888733 5667777777776 55666678999999999976333344322233333332110
Q ss_pred ccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHH
Q 013669 269 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331 (438)
Q Consensus 269 ~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl 331 (438)
.+...++.. .+.. ++..+++++++.+.++.+.+.+.+.+.|.+ ...-+++++..|+
T Consensus 269 ~~~~~~v~~----~~~~-~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 269 PLEPLPVSE----SALL-RLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred ccccccchh----hhcc-ccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 223445555 3433 678889999999999999988877666666 4567889999887
No 210
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=66.16 E-value=5.9 Score=42.55 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCC-eEEEEEeHHHHHHHhhc
Q 013669 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA-EVVGVITLRDVISCFIF 418 (438)
Q Consensus 367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~-~lvGvIT~~DIl~~l~~ 418 (438)
+++.++..++|..|..+.+..+.++.+|+||+... -++|.|.++.+...+-.
T Consensus 596 ~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 596 TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 49999999999999999998888999999986432 58999999999987753
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=49.66 E-value=54 Score=35.44 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC---CCCCcccccccCCccccccCCCCCCCceEEcCCCcHH
Q 013669 222 SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC---KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELIL 298 (438)
Q Consensus 222 ~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~---~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~ 298 (438)
...+.+...+ ..+++.|.+ |.++.+....++.+.+... .+..|.+....+.. +++ .+....++.|...+
T Consensus 63 ~l~~~l~~~~-~~~~l~D~~-G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTna--ig~-al~~~~pv~v~g~E--- 134 (638)
T PRK11388 63 DAWEYMADRE-CALLILDET-GCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNA--LSL-AAISGQPVKTMGDQ--- 134 (638)
T ss_pred HHHHHhcCCC-cEEEEEcCC-ceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCH--HHH-HHhcCCceEEecHH---
Confidence 3334444444 678889987 9999999988887765431 12333222211111 111 12222455565544
Q ss_pred HHHHHHHHcCCceEeEEeCCCCeEEEEEe
Q 013669 299 EAFKRMKDNNIGGIPVVEGQQKKIVGNVS 327 (438)
Q Consensus 299 ~a~~~m~~~~~~~lpVvd~~~~~lvGiIs 327 (438)
+-...+......+.||.|. +|+++|+|+
T Consensus 135 H~~~~~~~~~c~aaPI~d~-~G~liGvl~ 162 (638)
T PRK11388 135 HFKQALHNWAFCATPVFDS-KGRLTGTIA 162 (638)
T ss_pred HHHHhccCceEEeeEEEcC-CCCEEEEEE
Confidence 3344445555678999998 899999996
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=40.02 E-value=56 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669 390 VHRIYVVAGEEAEVVGVITLRDVISCFI 417 (438)
Q Consensus 390 i~~l~VVd~~g~~lvGvIT~~DIl~~l~ 417 (438)
...+-|||++| +.+|+++.++.++..-
T Consensus 12 ~~~VrlI~~~g-~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLIDEDG-EQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE-TTS--EEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCC-cEeceEEHHHHHHHHH
Confidence 35688999998 9999999999998553
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=35.65 E-value=1.1e+02 Score=33.09 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--ccccc----Cc-HHHHhcccCCCCCCCCCCCCC
Q 013669 297 ILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--SNFRQ----LT-VRDFMNAVVPTTPDSGKVNPP 369 (438)
Q Consensus 297 l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~--~~~~~----~~-v~~~m~~~~~~~~~~~~~~~~ 369 (438)
+....+.+...+ ..++++|. +|.++......+++..+....+. ..+.+ +. +.-.+. ...+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~-----------~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI-----------SGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh-----------cCCc
Confidence 344445555555 57788888 89999999988887665431110 01111 11 111221 1356
Q ss_pred eEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeH
Q 013669 370 ITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL 409 (438)
Q Consensus 370 ~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~ 409 (438)
+.|....-..+..+.+ .....||.|.+| +++|+|+.
T Consensus 128 v~v~g~EH~~~~~~~~---~c~aaPI~d~~G-~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFKQALHNW---AFCATPVFDSKG-RLTGTIAL 163 (638)
T ss_pred eEEecHHHHHHhccCc---eEEeeEEEcCCC-CEEEEEEE
Confidence 6666666555554443 456799999987 99999963
No 214
>PRK10026 arsenate reductase; Provisional
Probab=33.71 E-value=3e+02 Score=23.44 Aligned_cols=109 Identities=9% Similarity=0.070 Sum_probs=67.0
Q ss_pred ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCC
Q 013669 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVN 367 (438)
Q Consensus 288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~ 367 (438)
++..+...+...|++.+.++++..- +.|= .---.|..+|..++... ...+.+++++.. ...+
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~-~~d~----~~~ppt~~eL~~~l~~~-------g~~~~~lint~~-~~yr----- 67 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPT-IIHY----LETPPTRDELVKLIADM-------GISVRALLRKNV-EPYE----- 67 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcE-EEee----eCCCcCHHHHHHHHHhC-------CCCHHHHHHcCC-chHH-----
Confidence 5556667888999999999987642 3331 12236888888887631 335677776522 1111
Q ss_pred CCeEeCCCCCHHHHHHHHHhCC--CCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669 368 PPITCKLESTLGSVIHSLASKS--VHRIYVVAGEEAEVVGVITLRDVISCF 416 (438)
Q Consensus 368 ~~~~v~~~~tL~ea~~~m~~~~--i~~l~VVd~~g~~lvGvIT~~DIl~~l 416 (438)
..-.-..+.+..++++.|.++. +.|=.|+++++ .++|- ....++..+
T Consensus 68 ~L~~~~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~-a~i~R-p~e~v~~~l 116 (141)
T PRK10026 68 ELGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLG-TRLCR-PSEVVLEIL 116 (141)
T ss_pred HcCCCccCCCHHHHHHHHHhCccceeCcEEEcCCC-eEEEC-CHHHHHHHh
Confidence 1111113578899999999975 45544556666 88887 445555544
No 215
>smart00594 UAS UAS domain.
Probab=21.22 E-value=1e+02 Score=25.27 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCE---EEEEcCCCC--------CEEEEEeHHHHHHH
Q 013669 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN---VPIIEPGTP--------DIKNYITQSAVVQG 257 (438)
Q Consensus 194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~---lpVvd~~~~--------~v~Giit~~Di~~~ 257 (438)
+.+..|.+.+. +.++...-+.+-.+..+++...+++. +.+++...| ++-|.++..+++..
T Consensus 50 l~~~~V~~~i~----~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 50 LCNEAVKSLIR----ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred ccCHHHHHHHH----cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHh
Confidence 55556888877 55777666655566677776666655 557776522 33455555555544
Done!