BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013672
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 150/361 (41%), Gaps = 71/361 (19%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSAL 151
Y ++SIG+P +F + DTGS +W CQ + F+P ESS+YS
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYST------- 66
Query: 152 CKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF- 210
N + YG S + G +TLT + VPN FG + G F
Sbjct: 67 ------------NGQTFSLQYGSGSLT-GFFGYDTLTVQSIQVPNQEFGLSENEPGTNFV 113
Query: 211 -SQGAGLVGLGRGPLS----------LVSQ--LKEPKFSYCLTSIDAAKTSTLLMGXXXX 257
+Q G++GL LS +V + L P FS L++ + ++ G
Sbjct: 114 YAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFG---- 169
Query: 258 XXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGGLIIDS 316
+ T + +P+ Y+ + +E +GG AS + +G I+D+
Sbjct: 170 ---GVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGG-----QASGWC--SEGCQA-IVDT 218
Query: 317 GTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTG--LDVCFKLPSGSTDVEVPKLVFHF 374
GT+L V ++++S + D+ G L C + + +P L F
Sbjct: 219 GTSLL--------TVPQQYMSALLQATGAQEDEYGQFLVNCNSIQN------LPSLTFII 264
Query: 375 KGADVDLPPENYMIADS---SMGLACLAMGSSSG--MSIFGNVQQQNMLVLYDLAKETLS 429
G + LPP +Y+++++ ++G+ + S +G + I G+V ++ +YDL +
Sbjct: 265 NGVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVG 324
Query: 430 F 430
F
Sbjct: 325 F 325
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 68/316 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
+Y D+++G+P +F ILDTGS +W C CF + +D + SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKA---- 67
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
N E+ YG T S +G ++ +TL+ GD+++P F + G
Sbjct: 68 ---------------NGTEFAIQYG-TGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 209 GFSQGA--GLVGLGRGPLSL----------VSQ--LKEPKFSYCL--TSIDAAKTSTLLM 252
F+ G G++GLG +S+ + Q L E +F++ L TS D
Sbjct: 112 TFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATF 171
Query: 253 GXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGL 312
G I P+ + +++ + EGI +G ++ S G
Sbjct: 172 GGIDESKFKG--DITWLPVRRK----AYWEVKFEGIGLGDEYAELE----------SHGA 215
Query: 313 IIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVF 372
ID+GT+L L +++ E ++ + Q LD +T +P L+F
Sbjct: 216 AIDTGTSLITLPSGLAEMINAEIGAKKGWT-----GQYTLDC-------NTRDNLPDLIF 263
Query: 373 HFKGADVDLPPENYMI 388
+F G + + P +Y +
Sbjct: 264 NFNGYNFTIGPYDYTL 279
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 68/316 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
+Y D+++G+P +F ILDTGS +W C CF + +D + SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKA---- 67
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
N E+ YG T S +G ++ +TL+ GD+++P F + G
Sbjct: 68 ---------------NGTEFAIQYG-TGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 209 GFSQGA--GLVGLGRGPLSL----------VSQ--LKEPKFSYCL--TSIDAAKTSTLLM 252
F+ G G++GLG +S+ + Q L E +F++ L TS D
Sbjct: 112 TFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATF 171
Query: 253 GXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGL 312
G I P+ + +++ + EGI +G ++ S G
Sbjct: 172 GGIDESKFKG--DITWLPVRRK----AYWEVKFEGIGLGDEYAELE----------SHGA 215
Query: 313 IIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVF 372
ID+GT+L L +++ E ++ + Q LD +T +P L+F
Sbjct: 216 AIDTGTSLITLPSGLAEMINAEIGAKKGWT-----GQYTLDC-------NTRDNLPDLIF 263
Query: 373 HFKGADVDLPPENYMI 388
+F G + + P +Y +
Sbjct: 264 NFNGYNFTIGPYDYTL 279
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 68/316 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
+Y D+++G+P +F ILDTGS +W C CF + +D + SSSY
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKA---- 67
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
N E+ YG T S +G ++ +TL+ GD+++P F + G
Sbjct: 68 ---------------NGTEFAIQYG-TGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 209 GFSQGA--GLVGLGRGPLSL----------VSQ--LKEPKFSYCL--TSIDAAKTSTLLM 252
F+ G G++GLG +S+ + Q L E +F++ L TS D
Sbjct: 112 TFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATF 171
Query: 253 GXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGL 312
G I P+ + +++ + EGI +G ++ S G
Sbjct: 172 GGIDESKFKG--DITWLPVRRK----AYWEVKFEGIGLGDEYAELE----------SHGA 215
Query: 313 IIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVF 372
ID+GT+L L +++ E I K S Q LD +T +P L+F
Sbjct: 216 AIDTGTSLITLPSGLAEMINAE-IGAKKGST----GQYTLDC-------NTRDNLPDLIF 263
Query: 373 HFKGADVDLPPENYMI 388
+F G + + P +Y +
Sbjct: 264 NFNGYNFTIGPYDYTL 279
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 156/393 (39%), Gaps = 63/393 (16%)
Query: 87 AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIP 146
A T +Y+ ++ +P VS + ++D G +W C V SS+Y +
Sbjct: 17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYV-------------SSTYRPVR 63
Query: 147 CSSALCKAL-----------PQQECNANNACEYIYSYGDTSSSQGVLATETLTFGD---- 191
C ++ C P+ CN N + + +++ G +A + ++
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGS 123
Query: 192 -----VSVPNIGFGCGSDNEGDGFSQG-AGLVGLGRGPLSLVSQLK-----EPKFSYCLT 240
V+VP F C + + G G+ GLGR ++L SQ + KF+ CL+
Sbjct: 124 SSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLS 183
Query: 241 SIDAAKTSTLLMGX---XXXXXXXXXDQILT-TPLIKSPLQASF----------YYLPLE 286
+ S ++ G D+ LT TPL+ +P+ S Y++ ++
Sbjct: 184 G-STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVK 242
Query: 287 GISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQT-KLSVTD 345
I + + ++ S ++ G GG I + T L S + V + FI ++ ++T
Sbjct: 243 SIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITR 302
Query: 346 AADQTGLDVCF---KLPSGSTDVEVPK--LVFHFKGADVDLPPENYM--IADSSMGLACL 398
A CF + S VP LV + + N M I D+ + L +
Sbjct: 303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVV 362
Query: 399 AMGSSSGMSI-FGNVQQQNMLVLYDLAKETLSF 430
GS+ SI G Q ++ LV +DLA + F
Sbjct: 363 DGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 156/393 (39%), Gaps = 63/393 (16%)
Query: 87 AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIP 146
A T +Y+ ++ +P VS + ++D G +W C V SS+Y +
Sbjct: 17 ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYV-------------SSTYRPVR 63
Query: 147 CSSALCKAL-----------PQQECNANNACEYIYSYGDTSSSQGVLATETLTFGD---- 191
C ++ C P+ CN N + + +++ G +A + ++
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGS 123
Query: 192 -----VSVPNIGFGCGSDNEGDGFSQG-AGLVGLGRGPLSLVSQLK-----EPKFSYCLT 240
V+VP F C + + G G+ GLGR ++L SQ + KF+ CL+
Sbjct: 124 SSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLS 183
Query: 241 SIDAAKTSTLLMGX---XXXXXXXXXDQILT-TPLIKSPLQASF----------YYLPLE 286
+ S ++ G D+ LT TPL+ +P+ S Y++ ++
Sbjct: 184 G-STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVK 242
Query: 287 GISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQT-KLSVTD 345
I + + ++ S ++ G GG I + T L S + V + FI ++ ++T
Sbjct: 243 SIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITR 302
Query: 346 AADQTGLDVCF---KLPSGSTDVEVPK--LVFHFKGADVDLPPENYM--IADSSMGLACL 398
A CF + S VP LV + + N M I D+ + L +
Sbjct: 303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVV 362
Query: 399 AMGSSSGMSI-FGNVQQQNMLVLYDLAKETLSF 430
GS+ SI G Q ++ LV +DLA + F
Sbjct: 363 DGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 145/366 (39%), Gaps = 80/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPC--QVCFDQATPIFDPKESSSYSKIPCS 148
EY +SIG+P SF I DTGS +W C Q C + F P++SS+Y + +
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNK--FKPRQSSTYVETGKT 70
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
L +YG T +G+L +T++ G S PN G S E
Sbjct: 71 VDL-------------------TYG-TGGMRGILGQDTVSVGGGSDPNQELG-ESQTEPG 109
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ ++ SQ +++ FS+ L+ A + +L G
Sbjct: 110 PFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGG 169
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGGL 312
I P+ A Y+ + L+GI+V G +
Sbjct: 170 VDNSHYTGSIHWI--------PVTAEKYWQVALDGITVNGQTAACEGCQ----------A 211
Query: 313 IIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTG--LDVCFKLPSGSTDVEVPKL 370
I+D+GT+ SA + K+ A++ G + C + S +P +
Sbjct: 212 IVDTGTSKIVAPVSALANIMKDI---------GASENQGEMMGNCASVQS------LPDI 256
Query: 371 VFHFKGADVDLPPENYMIADSSM---GLACLAMGS-SSGMSIFGNVQQQNMLVLYDLAKE 426
F G LPP Y+ D + GL + S +S + IFG+V +N +YD
Sbjct: 257 TFTINGVKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNN 316
Query: 427 TLSFIP 432
+ F P
Sbjct: 317 KVGFAP 322
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 141/352 (40%), Gaps = 58/352 (16%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIWT--QCKPCQVCFDQATPIFDPKESSSYSKIPCSS 149
Y D+ +GS + ++DTGS +W CQV + T F +E + P SS
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTF---DPSSS 70
Query: 150 ALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDG 209
+ + L Q ++ YGD +SSQG +T+ FG +S+ N F + D
Sbjct: 71 SSAQNLNQ---------DFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQ 121
Query: 210 FSQGAGLVGLGRG-------PLSLVSQ--LKEPKFSYCLTSIDAAKTSTLLMGXXXXXXX 260
G G G P++L Q + + +S L S DA+ + G
Sbjct: 122 GIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAK-- 179
Query: 261 XXXDQILTTPLIKSPLQASF-YYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTT 319
T L P+ +S + L I+ GT + +A +++DSGTT
Sbjct: 180 ------YTGTLTALPVTSSVELRVHLGSINFDGTSVSTNAD-----------VVLDSGTT 222
Query: 320 LTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHF-KGAD 378
+TY S D K + A + ++LPS + VF+F +G
Sbjct: 223 ITYFSQSTAD----------KFARIVGATWDSRNEIYRLPSCDLSGDA---VFNFDQGVK 269
Query: 379 VDLPPENYMIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSF 430
+ +P ++ DS + + S + +I G+ + ++YDL +T+S
Sbjct: 270 ITVPLSELILKDSDSSICYFGI-SRNDANILGDNFLRRAYIVYDLDDKTISL 320
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 51/268 (19%)
Query: 84 SVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQ--CKPCQVCFDQATPIFDPKESSS 141
++H Y D+++GS + I+DTGS +W CQV + T F K+ +
Sbjct: 6 TLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADF-CKQKGT 64
Query: 142 YSKIPCSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGC 201
Y P S+ + L + YGD SSSQG L +T+ FG VS+ N
Sbjct: 65 YD--PSGSSASQDLN---------TPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLA- 112
Query: 202 GSDNEGDGFSQGAGLVGLGRG-----------PLSLVSQ--LKEPKFSYCLTSIDAAKTS 248
+ D S G++G+G P++L Q + + +S L S DAA
Sbjct: 113 ----DVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQ 168
Query: 249 TLLMGXXXXXXXXXXDQILTTPLIKSPLQASF-YYLPLEGISVGGTRLPIDASNFALQED 307
+ G + LI P+ + + L + V G + D +
Sbjct: 169 IIFGGVDNAK--------YSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVD------ 214
Query: 308 GSGGLIIDSGTTLTYLIDSAFDLVKKEF 335
+++DSGTT+TYL D + K F
Sbjct: 215 ----VLLDSGTTITYLQQDLADQIIKAF 238
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 108/268 (40%), Gaps = 51/268 (19%)
Query: 84 SVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQ--CKPCQVCFDQATPIFDPKESSS 141
++H Y D+++GS + I+DTGS +W CQV + T F K+ +
Sbjct: 6 TLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADF-CKQKGT 64
Query: 142 YSKIPCSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGC 201
Y P S+ + L + YGD SSSQG L +T+ FG VS+ N
Sbjct: 65 YD--PSGSSASQDLN---------TPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLA- 112
Query: 202 GSDNEGDGFSQGAGLVGLGRG-----------PLSLVSQ--LKEPKFSYCLTSIDAAKTS 248
+ D S G++G+G P++L Q + + +S L S D+A
Sbjct: 113 ----DVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATGQ 168
Query: 249 TLLMGXXXXXXXXXXDQILTTPLIKSPLQASF-YYLPLEGISVGGTRLPIDASNFALQED 307
+ G + LI P+ + + L + V G + D +
Sbjct: 169 IIFGGVDNAK--------YSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVD------ 214
Query: 308 GSGGLIIDSGTTLTYLIDSAFDLVKKEF 335
+++DSGTT+TYL D + K F
Sbjct: 215 ----VLLDSGTTITYLQQDLADQIIKAF 238
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 141/350 (40%), Gaps = 59/350 (16%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
+Y + IG+P F+ + DTGS +W C+ VC + FDP++SS++
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHR--FDPRKSSTFRN---- 65
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
L K L YG T S +G L +T+T ++ PN G ++ G+
Sbjct: 66 --LGKPLSIH-------------YG-TGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGE 109
Query: 209 GF--SQGAGLVGLGRGPLSLVSQLKEPKFSYCL-TSIDAAKTSTLLMGXXXXXXXXXXDQ 265
F S+ G++GL SL S+ P F + + A ++ M
Sbjct: 110 VFTYSEFDGILGLAYP--SLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGA 167
Query: 266 I----LTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTL 320
I T L P+ Y+ ++ +++ G A+ G I+D+GT++
Sbjct: 168 IDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGV---------AVACVGGCQAILDTGTSV 218
Query: 321 TYLIDSAFDLVKKEFISQTKLSVTDAADQTG-LDV-CFKLPSGSTDVEVPKLVFHFKGAD 378
L + D++K ++++ ++ G DV C L S +P +VF G D
Sbjct: 219 --LFGPSSDILK------IQMAIGATENRYGEFDVNCGNLRS------MPTVVFEINGRD 264
Query: 379 VDLPPENYMIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETL 428
L P Y D + ++S + I G+V + ++D A +
Sbjct: 265 YPLSPSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRV 314
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 108
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 109 ----EATSQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 153
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 154 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 213
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 214 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 254
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 255 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIDS------LPDI 302
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 362
Query: 427 TLSFIP 432
+ P
Sbjct: 363 KVGLAP 368
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 64
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 65 ----EATSQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 109
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 110 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 169
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 170 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 210
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 211 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIAS------LPDI 258
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 318
Query: 427 TLSFIP 432
+ P
Sbjct: 319 KVGLAP 324
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
EY ++IG+P F+ DTGS +W C C + T +DP +SS+Y
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSSTYQA------ 68
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
+ + SYGD SS+ G+LA + + G + + + E F
Sbjct: 69 -------------DGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIEL-AKREAASF 114
Query: 211 SQGA--GLVGLGRGPLSLVSQLKEP 233
+ G GL+GLG ++ V +K P
Sbjct: 115 ASGPNDGLLGLGFDTITTVRGVKTP 139
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 108
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 109 ----EATXQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 153
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 154 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 213
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 214 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 254
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 255 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIDS------LPDI 302
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 362
Query: 427 TLSFIP 432
+ P
Sbjct: 363 KVGLAP 368
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 64
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 65 ----EATSQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 109
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 110 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 169
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 170 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 210
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 211 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIDS------LPDI 258
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 318
Query: 427 TLSFIP 432
+ P
Sbjct: 319 KVGLAP 324
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 64
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 65 ----EATXQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 109
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 110 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 169
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 170 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 210
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 211 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIDS------LPDI 258
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 318
Query: 427 TLSFIP 432
+ P
Sbjct: 319 KVGLAP 324
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 136/352 (38%), Gaps = 55/352 (15%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
EY ++IG+P F+ DTGS +W C C T +DP +SS+Y
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK-YDPNQSSTYQA------ 68
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
+ + SYGD SS+ G+LA + + G + + + E F
Sbjct: 69 -------------DGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIEL-AKREAASF 114
Query: 211 SQGA--GLVGLGRGPLSLVSQLKEPKFSYCLTSIDAAKTSTLLMGXXXXXXXXXXDQILT 268
+ G GL+GLG ++ V +K P + + + + +G + +
Sbjct: 115 ASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGG---EYIF 171
Query: 269 TPLIKSPLQASFYYLPLE------GISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTY 322
+ + S +P++ GI+V R + S A DG I+D+GTTL
Sbjct: 172 GGYDSTKFKGSLTTVPIDNSRGWWGITV--DRATVGTSTVASSFDG----ILDTGTTLLI 225
Query: 323 LIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPK-LVFHFKGADVDL 381
L ++ V + + +D D T C D K LVF GA +
Sbjct: 226 LPNNIAASVARAY------GASDNGDGTYTISC--------DTSAFKPLVFSINGASFQV 271
Query: 382 PPENYMIADSSMGLACLAMG-SSSGMSIFGNVQQQNMLVLYDLAKETLSFIP 432
P++ ++ + G G + G +I G+ +N V+++ + P
Sbjct: 272 SPDS-LVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP 322
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 64
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 65 ----EATSQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 109
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 110 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 169
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 170 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 210
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 211 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIDS------LPDI 258
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 318
Query: 427 TLSFIP 432
+ P
Sbjct: 319 KVGLAP 324
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 149/366 (40%), Gaps = 78/366 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ--VCFDQATPIFDPKESSSYSKIPCS 148
EY + IG+PA F+ I DTGS +W C C D F+P +SS++
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF------ 64
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+A Q E +YG T S G+L +T+ G +S N FG S+ E
Sbjct: 65 ----EATXQ---------ELSITYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPG 109
Query: 209 GFSQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMG 253
F A G++GL G P+ +L Q + + FS L+S D + + LL G
Sbjct: 110 SFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGG 169
Query: 254 XXXXXXXXXXDQILTTPLIKSPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGG- 311
T L P+ Y+ + L+ I++ G + SGG
Sbjct: 170 IDS--------SYYTGSLNWVPVSVEGYWQITLDSITMDGETIAC-----------SGGC 210
Query: 312 -LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
I+D+GT+L SA + Q+ + ++ +D + C + S +P +
Sbjct: 211 QAIVDTGTSLLTGPTSAIANI------QSDIGASENSDGEMVISCSSIDS------LPDI 258
Query: 371 VFHFKGADVDLPPENYMIADS---SMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKE 426
VF G L P Y++ D + G + + +SSG + I G+V + ++D A
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANN 318
Query: 427 TLSFIP 432
+ P
Sbjct: 319 KVGLAP 324
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 123/317 (38%), Gaps = 67/317 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 73
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 74 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 117
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMGX 254
F ++ G+VG+G P+ +++SQ LKE FS+ D+ +L G
Sbjct: 118 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSLGGQIVLGGS 176
Query: 255 XXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLII 314
I LIK+ + + + ++G+SVG + L L EDG
Sbjct: 177 DPQHYEGNFHYI---NLIKTGV----WQIQMKGVSVGSSTL--------LCEDGC----- 216
Query: 315 DSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHF 374
L+D+ + S KL A + D K G T +P + FH
Sbjct: 217 ------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDISFHL 267
Query: 375 KGADVDLPPENYMIADS 391
G + L +Y+ +S
Sbjct: 268 GGKEYTLTSADYVFQES 284
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 144/378 (38%), Gaps = 51/378 (13%)
Query: 89 TGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCS 148
TG + +L +P + ++D + +W C+ P + S + C
Sbjct: 20 TGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCL 79
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSS------QGVLATE-----TLTFGD-VSVPN 196
S C A + C+ N C + + T + + VLA T G V+VP
Sbjct: 80 S--CPAASRPGCH-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQ 136
Query: 197 IGFGCG-SDNEGDGFSQGA-GLVGLGRGPLSLVSQLK-----EPKFSYCLTSIDAAKTST 249
F C S G + G+ GLG P+SL +QL + +F+ CL+ +K
Sbjct: 137 FLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSK-GA 195
Query: 250 LLMGXXXXXXXXXXDQILTTPLIKSPLQASF---YYLPLEGISVG-GTRLPIDASNFALQ 305
++ G +Q + L +PL + Y + + I + + P++ + +
Sbjct: 196 IIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIV 255
Query: 306 EDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQ-TKLSVTDAADQTGLDVCFK------L 358
SGG +I + T L S + + F Q K + + GL CF
Sbjct: 256 GSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGL--CFNSNKINAY 313
Query: 359 PSGSTDVEVPK-LVFHFKGADVDLPPENYMIADSSMGLACLAMGSSSGMS-----IFGNV 412
PS ++ P V+ G D ++ + G+ CL + + GM G
Sbjct: 314 PSVDLVMDKPNGPVWRISGED--------LMVQAQPGVTCLGV-MNGGMQPRAEITLGAR 364
Query: 413 QQQNMLVLYDLAKETLSF 430
Q + LV++DLA+ + F
Sbjct: 365 QLEENLVVFDLARSRVGF 382
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 67/264 (25%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIWT--------QCKPCQVC-FDQATPIFDPKESSSY 142
Y D++IGS F+ I+DTGS +W + +P Q F + I+ PK S++
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTT- 72
Query: 143 SKIPCSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCG 202
+ N + YGD SSSQG L +T+ FG S+ F
Sbjct: 73 ------------------SQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVF--- 111
Query: 203 SDNEGDGFSQGAGLVGLGRG-----------PLSLVSQ--LKEPKFSYCLTSIDAAKTST 249
+D Q G++G+G P++L +Q + + +S L S +AA
Sbjct: 112 ADITKTSIPQ--GILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQI 169
Query: 250 LLMGXXXXXXXXXXDQILTTPLIK-SPLQASFYYLPLEGISVGGTRLPIDASNFALQEDG 308
+ G ++ P+ L+ + L G ++ G ID
Sbjct: 170 IFGGVDKAKYSGS---LIAVPVTSDRELRITLNSLKAVGKNINGN---ID---------- 213
Query: 309 SGGLIIDSGTTLTYL-IDSAFDLV 331
+++DSGTT+TYL D A D++
Sbjct: 214 ---VLLDSGTTITYLQQDVAQDII 234
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIW---TQCKPCQVCFDQATPIFDPKESSSYSKIPCS 148
Y ++ IG+P F+ I DTGS ++W ++C + C +A +++ +SS+Y +
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKAC--RAHSMYESSDSSTYKENGTF 72
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
A+ YG T S G + +++T GD+ V F +D +
Sbjct: 73 GAII-------------------YG-TGSITGFFSQDSVTIGDLVVKEQDFIEATDEADN 112
Query: 209 GFSQGA--GLVGLGRGPLS------LVSQ--LKEPKFSYCLT-SIDAAKTSTLLMG 253
F G++GL +S +++Q +KE +FS+ L ++D + L+ G
Sbjct: 113 VFLHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFG 168
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 72/332 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 66
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 67 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 110
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTL---- 250
F ++ G+VG+G P+ +++SQ LKE FS+ D+ + +L
Sbjct: 111 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQSLGGQI 169
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
++G + LIK+ + + + ++G+SVG + L L EDG
Sbjct: 170 VLGGSDPQHYEGNFHYIN--LIKTGV----WQIQMKGVSVGSSTL--------LCEDGC- 214
Query: 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
L+D+ + S KL A + D K G T +P +
Sbjct: 215 ----------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDI 261
Query: 371 VFHFKGADVDLPPENYMIAD--SSMGLACLAM 400
FH G + L +Y+ + SS L LA+
Sbjct: 262 SFHLGGKEYTLTSADYVFQESYSSKKLCTLAI 293
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 72/332 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 70
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 71 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 114
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTL---- 250
F ++ G+VG+G P+ +++SQ LKE FS+ D+ + +L
Sbjct: 115 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQSLGGQI 173
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
++G + LIK+ + + + ++G+SVG + L L EDG
Sbjct: 174 VLGGSDPQHYEGNFHYIN--LIKTGV----WQIQMKGVSVGSSTL--------LCEDGC- 218
Query: 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
L+D+ + S KL A + D K G T +P +
Sbjct: 219 ----------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDI 265
Query: 371 VFHFKGADVDLPPENYMIAD--SSMGLACLAM 400
FH G + L +Y+ + SS L LA+
Sbjct: 266 SFHLGGKEYTLTSADYVFQESYSSKKLCTLAI 297
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 72/332 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 73
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 74 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 117
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTL---- 250
F ++ G+VG+G P+ +++SQ LKE FS+ D+ + +L
Sbjct: 118 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQSLGGQI 176
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
++G + LIK+ + + + ++G+SVG + L L EDG
Sbjct: 177 VLGGSDPQHYEGNFHYIN--LIKTGV----WQIQMKGVSVGSSTL--------LCEDGC- 221
Query: 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
L+D+ + S KL A + D K G T +P +
Sbjct: 222 ----------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDI 268
Query: 371 VFHFKGADVDLPPENYMIAD--SSMGLACLAM 400
FH G + L +Y+ + SS L LA+
Sbjct: 269 SFHLGGKEYTLTSADYVFQESYSSKKLCTLAI 300
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 142/365 (38%), Gaps = 71/365 (19%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
EY +SIGSP +F+ I DTGS +W C + F P +SS+YS+
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ------ 77
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
P Q + YG T S G++ + ++ ++V FG G F
Sbjct: 78 -----PGQ--------SFSIQYG-TGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTF 123
Query: 211 --SQGAGLVGLGRGPLS----------LVSQ--LKEPKFS-YCLTSIDAAKTSTLLMGXX 255
++ G++GLG L+ +++Q + P FS Y ++ + S L+ G
Sbjct: 124 VDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFG-- 181
Query: 256 XXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIID 315
+ P+ K +++ + L+ I VGGT + A I+D
Sbjct: 182 GYDHSHFSGSLNWVPVTKQ----AYWQIALDNIQVGGTVMFCSEGCQA---------IVD 228
Query: 316 SGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK 375
+GT+ LI D +K+ + +A +D + + + +V +P + F
Sbjct: 229 TGTS---LITGPSDKIKQ---------LQNAIGAAPVDGEYAVECANLNV-MPDVTFTIN 275
Query: 376 GADVDLPPENYMIAD-------SSMGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKET 427
G L P Y + D S G L + +G + I G+V + ++D
Sbjct: 276 GVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNR 335
Query: 428 LSFIP 432
+ P
Sbjct: 336 VGLAP 340
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 72/332 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 73
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 74 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 117
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTL---- 250
F ++ G+VG+G P+ +++SQ LKE FS+ D+ + +L
Sbjct: 118 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQSLGGQI 176
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
++G + LIK+ + + + ++G+SVG + L L EDG
Sbjct: 177 VLGGSDPQHYEGNFHYIN--LIKTGV----WQIQMKGVSVGSSTL--------LCEDGC- 221
Query: 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
L+D+ + S KL A + D K G T +P +
Sbjct: 222 ----------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDI 268
Query: 371 VFHFKGADVDLPPENYMIAD--SSMGLACLAM 400
FH G + L +Y+ + SS L LA+
Sbjct: 269 SFHLGGKEYTLTSADYVFQESYSSKKLCTLAI 300
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 72/332 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 69
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 70 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 113
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTL---- 250
F ++ G+VG+G P+ +++SQ LKE FS+ D+ + +L
Sbjct: 114 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQSLGGQI 172
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
++G + LIK+ + + + ++G+SVG + L L EDG
Sbjct: 173 VLGGSDPQHYEGNFHYIN--LIKTGV----WQIQMKGVSVGSSTL--------LCEDGC- 217
Query: 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
L+D+ + S KL A + D K G T +P +
Sbjct: 218 ----------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDI 264
Query: 371 VFHFKGADVDLPPENYMIAD--SSMGLACLAM 400
FH G + L +Y+ + SS L LA+
Sbjct: 265 SFHLGGKEYTLTSADYVFQESYSSKKLCTLAI 296
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 72/332 (21%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 116
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 117 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 160
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTL---- 250
F ++ G+VG+G P+ +++SQ LKE FS+ D+ + +L
Sbjct: 161 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQSLGGQI 219
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
++G + LIK+ + + + ++G+SVG + L L EDG
Sbjct: 220 VLGGSDPQHYEGNFHYIN--LIKTGV----WQIQMKGVSVGSSTL--------LCEDGC- 264
Query: 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKL 370
L+D+ + S KL A + D K G T +P +
Sbjct: 265 ----------LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPT---LPDI 311
Query: 371 VFHFKGADVDLPPENYMIAD--SSMGLACLAM 400
FH G + L +Y+ + SS L LA+
Sbjct: 312 SFHLGGKEYTLTSADYVFQESYSSKKLCTLAI 343
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 139/363 (38%), Gaps = 75/363 (20%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIWT-----QCKPCQVCFDQATPIFDPKESSSYSKIP 146
Y +S+GS + I+DTGS W QC C +++ F P SSSY +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNL- 70
Query: 147 CSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPN---------- 196
+ YGD S+SQG +T+T VS+
Sbjct: 71 ------------------GAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTS 112
Query: 197 -----IGFGCGSDNEGDGFSQGAGLVGLGRGPLSLVSQLKEPKFSYCLT-SIDAAKTSTL 250
+G G S+ S P++L Q K +Y L + +A+T T+
Sbjct: 113 VDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTI 172
Query: 251 LMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310
+ G + L+ + +S + +++ + + S+F+ +
Sbjct: 173 IFGGVDNAK-------YSGKLVAEQVTSS------QALTISLASVNLKGSSFSFGD---- 215
Query: 311 GLIIDSGTTLTYL-IDSAFDLVKKEFISQTKLSVTDAADQTGLDV-CFKLPSGSTDVEVP 368
G ++DSGTTLTY D A L K ++ A DQ + C SG+T
Sbjct: 216 GALLDSGTTLTYFPSDFAAQLADKAGARLVQV----ARDQYLYFIDCNTDTSGTT----- 266
Query: 369 KLVFHF-KGADVDLPPENYMIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKET 427
VF+F GA + +P Y+ + CL S +I G+ ++ +LY+L T
Sbjct: 267 --VFNFGNGAKITVPNTEYVYQNGDG--TCLWGIQPSDDTILGDNFLRHAYLLYNLDANT 322
Query: 428 LSF 430
+S
Sbjct: 323 ISI 325
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 68/361 (18%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
EY + IG+PA F+ + DTGS +W C F+P++SS+Y + +
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTSETVS 72
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
+ +YG T S G+L +T+ G +S N FG S+ E F
Sbjct: 73 I-------------------TYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPGSF 111
Query: 211 SQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMGXX 255
A G++GL G P+ ++ +Q + + FS L++ D + + + G
Sbjct: 112 LYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGID 171
Query: 256 XXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIID 315
+ + T ++ + ++ I++ G + A I+D
Sbjct: 172 SSYYTGSLNWVPVT-------VEGYWQITVDSITMNGEAIACAEGCQA---------IVD 215
Query: 316 SGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK 375
+GT+L S + Q+ + ++ +D + C + S +P +VF
Sbjct: 216 TGTSLLTGPTSPIANI------QSDIGASENSDGDMVVSCSAISS------LPDIVFTIN 263
Query: 376 GADVDLPPENYMIADSS---MGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKETLSFI 431
G +PP Y++ G + + + SG + I G+V + ++D A +
Sbjct: 264 GVQYPVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGLA 323
Query: 432 P 432
P
Sbjct: 324 P 324
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 39/253 (15%)
Query: 84 SVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYS 143
++H Y D+++GS + I+DTGS +W +C PK
Sbjct: 6 TLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNV-ICI--------PKWRGDKG 56
Query: 144 KIPCSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGS 203
C SA + + N + YGD S ++G L +T+ G VSV + F
Sbjct: 57 DF-CKSAGSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVW 115
Query: 204 DNE------GDGFSQG-AGLVGLGRGPLSLVSQLKEPKFSYCLTSIDAAKTSTLLMGXXX 256
G GF G A P+SL +Q K +Y L +++A+ ST
Sbjct: 116 STSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLY-LNSAEAST------- 167
Query: 257 XXXXXXXDQILTTPLIKSPLQASFYYLPL---EGISVGGTRLPIDASNFALQEDGSGGLI 313
QI+ + K+ S LP+ + ++VG + + N D + ++
Sbjct: 168 -------GQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNV----DANTNVL 216
Query: 314 IDSGTTLTYLIDS 326
+DSGTT++Y S
Sbjct: 217 LDSGTTISYFTRS 229
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 97/252 (38%), Gaps = 43/252 (17%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
+Y++++ +GSPA ++S ++DTGS W SY K SSA
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGADK------------------SYVKTSTSSA 54
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEG-DG 209
+ +YG S S G T+T+T G +++P G S + G DG
Sbjct: 55 TSDKVS-------------VTYGSGSFS-GTEYTDTVTLGSLTIPKQSIGVASRDSGFDG 100
Query: 210 FSQ--GAGLVGLGRGPLSLVSQLKEPKFSYCLTSIDAAKTSTLLMGXXXXXXXXXXDQIL 267
G G V L G LS + P + L S T+ L + + L
Sbjct: 101 VDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGEL 160
Query: 268 TTPLI-KSPLQASFYYLPLEGISVGGTRLPID-----ASNFALQEDGSGGLIIDSGTTLT 321
T S S Y P+ S I+ S+ ++ +G I+D+GTTLT
Sbjct: 161 TFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAG--IVDTGTTLT 218
Query: 322 YLIDSAFDLVKK 333
+ AF KK
Sbjct: 219 LIASDAFAKYKK 230
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 142/361 (39%), Gaps = 68/361 (18%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
EY + IG+PA F+ + DTGS +W C F+P++SS+Y + +
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTSETVS 72
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
+ +YG T S G+L +T+ G +S N FG S+ E F
Sbjct: 73 I-------------------TYG-TGSMTGILGYDTVQVGGISDTNQIFGL-SETEPGSF 111
Query: 211 SQGA---GLVGL--------GRGPL--SLVSQ--LKEPKFSYCLTSIDAAKTSTLLMGXX 255
A G++GL G P+ ++ +Q + + FS L++ D + + + G
Sbjct: 112 LYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGID 171
Query: 256 XXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIID 315
+ + T ++ + ++ I++ G + A E I+D
Sbjct: 172 SSYYTGSLNWVPVT-------VEGYWQITVDSITMNGEAI-------ACAEGCQA--IVD 215
Query: 316 SGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK 375
+GT+L S + Q+ + ++ +D + C + S +P +VF
Sbjct: 216 TGTSLLTGPTSPIANI------QSDIGASENSDGDMVVSCSAISS------LPDIVFTIN 263
Query: 376 GADVDLPPENYMIADSS---MGLACLAMGSSSG-MSIFGNVQQQNMLVLYDLAKETLSFI 431
G +PP Y++ G + + + SG + I G+V + ++D A +
Sbjct: 264 GVQYPVPPSAYILQSEGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVGLA 323
Query: 432 P 432
P
Sbjct: 324 P 324
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 137/358 (38%), Gaps = 65/358 (18%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSAL 151
Y D+++GS + ++DTGS +W P QA DP ++ K + +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWV---PDSQVSCQAGQGQDP----NFCKNEGTYSP 66
Query: 152 CKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFS 211
+ Q N+ + E YGD ++SQG +T+ FG +S+ F + D
Sbjct: 67 SSSSSSQNLNSPFSIE----YGDGTTSQGTWYKDTIGFGGISITKQQFADVTSTSVD--- 119
Query: 212 QGAGLVGLGRG-----------PLSLVSQ--LKEPKFSYCLTSIDAAKTSTLLMGXXXXX 258
G++G+G P++L +Q + + +S L S A + G
Sbjct: 120 --QGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSGQIIFGGVDNAK 177
Query: 259 XXXXXDQILTTPLIKSPLQA-SFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSG 317
+ LI P+ + + + L + V G + D +++DSG
Sbjct: 178 --------YSGTLIALPVTSDNELRIHLNTVKVAGQSINADVD-----------VLLDSG 218
Query: 318 TTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHF-KG 376
TT+TYL D V F Q DA V L SGS D F F K
Sbjct: 219 TTITYLQQGVADQVISAFNGQ---ETYDANGNLFYLVDCNL-SGSVD-------FAFDKN 267
Query: 377 ADVDLPPENY----MIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSF 430
A + +P + D + C + +S +I G+ ++ ++YDL +S
Sbjct: 268 AKISVPASEFTAPLYTEDGQVYDQCQLLFGTSDYNILGDNFLRSAYIVYDLDDNEISL 325
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 20/145 (13%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
+Y + +G+P F+ + DTGS W C+ + FDP++SS++
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQN------ 68
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
L K L YG T S QG+L +T+T ++ G + GD F
Sbjct: 69 LGKPLSIH-------------YG-TGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVF 114
Query: 211 SQGAGLVGLGRGPLSLVSQLKEPKF 235
+ LG SL S+ P F
Sbjct: 115 TYAEFDGILGMAYPSLASEYSIPVF 139
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 20/145 (13%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
+Y + +G+P F+ + DTGS W C+ + FDP++SS++
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQN------ 68
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
L K L YG T S QG+L +T+T ++ G + GD F
Sbjct: 69 LGKPLSIH-------------YG-TGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFF 114
Query: 211 SQGAGLVGLGRGPLSLVSQLKEPKF 235
+ LG SL S+ P F
Sbjct: 115 TYAEFDGILGMAYPSLASEYSIPVF 139
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 134/374 (35%), Gaps = 78/374 (20%)
Query: 106 SAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALC---KALPQQECNA 162
S +LD L+W+ C D P P E IPCSS C A P C A
Sbjct: 25 SLVLDVAGPLVWSTC-------DGGQP---PAE------IPCSSPTCLLANAYPAPGCPA 68
Query: 163 --------NNACEYIYSYGDTS--------SSQGVLATETLTFGDVSVPNIGF--GCGSD 204
+ C Y Y S S +A T VS N+G C
Sbjct: 69 PSCGSDKHDKPCT-AYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPS 127
Query: 205 NEGDGFSQGA-GLVGLGRGPLSLVSQLKEP-----KFSYCLTSIDAAKTSTLLMGXXXXX 258
+G+ G+ GL L+L +Q+ +F CL + + G
Sbjct: 128 KLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT---GGPGVAIFGGGPVP 184
Query: 259 XXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGT 318
+ TPL+ + +Y+ I VG TR+P+ A +GG+++ T
Sbjct: 185 WPQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALA-----TGGVMLS--T 236
Query: 319 TLTYLI------DSAFDLVKKEFISQ--TKLSVTDAADQTG-LDVCFKLPSGSTDV---E 366
L Y++ D K +Q V A + VC+ + ++
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296
Query: 367 VPKLVFHFK-GADVDLPPENYMIADSSMGLACLAMGSSSGMS---------IFGNVQQQN 416
VP + G+D + +N M+ D G AC+A G++ I G Q ++
Sbjct: 297 VPNVQLGLDGGSDWTMTGKNSMV-DVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMED 355
Query: 417 MLVLYDLAKETLSF 430
++ +D+ K+ L F
Sbjct: 356 FVLDFDMEKKRLGF 369
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 135/375 (36%), Gaps = 80/375 (21%)
Query: 106 SAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALC---KALPQQECNA 162
S +LD L+W+ CK Q P E IPCSS C A P C A
Sbjct: 25 SLVLDVAGPLVWSTCKGGQ----------PPAE------IPCSSPTCLLANAYPAPGCPA 68
Query: 163 --------NNACEYIYSYGDTS--------SSQGVLATETLTFGDVSVPNIGF--GCGSD 204
+ C Y Y S S +A T VS N+G C
Sbjct: 69 PSCGSDKHDKPCT-AYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPS 127
Query: 205 NEGDGFSQGA-GLVGLGRGPLSLVSQLKEP-----KFSYCLTSIDAAKTSTLLMGXXXXX 258
+G+ G+ GL L+L +Q+ +F CL + + G
Sbjct: 128 KLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT---GGPGVAIFGGGPVP 184
Query: 259 XXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGT 318
+ TPL+ + +Y+ I VG TR+P+ A +GG+++ T
Sbjct: 185 WPQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALA-----TGGVMLS--T 236
Query: 319 TLTYLIDSAFDLVKKEFISQTKLSVTDAAD----------QTGLDVCFKLPSGSTDV--- 365
L Y++ D+ + + TK A+ VC+ + ++
Sbjct: 237 RLPYVLLRP-DVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGY 295
Query: 366 EVPKLVFHFK-GADVDLPPENYMIADSSMGLACLAMGSSSGMS---------IFGNVQQQ 415
VP + G+D + +N M+ D G AC+A G++ I G Q +
Sbjct: 296 AVPNVQLGLDGGSDWTMTGKNSMV-DVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQME 354
Query: 416 NMLVLYDLAKETLSF 430
+ ++ +D+ K+ L F
Sbjct: 355 DFVLDFDMEKKRLGF 369
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 37/163 (22%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQAT--PIFDPKESSSYSKIPCS 148
+Y ++ IG+P +F + DTGS +W C + +FD +SSSY
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----- 73
Query: 149 SALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD 208
+N E Y T + G L+ + +T G ++V + FG ++
Sbjct: 74 --------------HNGTELTLRY-STGTVSGFLSQDIITVGGITVTQM-FGEVTEMPAL 117
Query: 209 GF--SQGAGLVGLG--------RGPL--SLVSQ--LKEPKFSY 237
F ++ G+VG+G P+ +++SQ LKE FS+
Sbjct: 118 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSF 160
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 144/353 (40%), Gaps = 55/353 (15%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSA 150
EY+ +SIG+PA DTGS +W F T PK S++ A
Sbjct: 16 EYITSVSIGTPAQVLPLDFDTGSSDLW--------VFSSET----PKSSAT------GHA 57
Query: 151 LCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF 210
+ + + SYGD SSS G + T+ +T G SV G + + F
Sbjct: 58 IYTPSKSSTSKKVSGASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTE-F 116
Query: 211 SQG---AGLVGLGRGPLSLVS-QLKEPKFSYCLTSI-DAAKTSTLLMGXXXXXXXXXXD- 264
Q +GLVGL + V ++ FS +S+ + T+ L G D
Sbjct: 117 VQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASSLAEPLFTADLRHGQNGSYNFGYIDT 176
Query: 265 QILTTPLIKSPLQAS--FYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTY 322
+ P+ +P+ S F+ G SVGG +L ++ DG I D+GTTL
Sbjct: 177 SVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSI------DG----IADTGTTLLL 226
Query: 323 LIDSAFD-----LVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGA 377
L D+ D + ++ +Q + V D + F GS+ + +P G
Sbjct: 227 LDDNVVDAYYANVQSAQYDNQQEGVVFDCDEDL---PSFSFGVGSSTITIP-------GD 276
Query: 378 DVDLPPENYMIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSF 430
++L P + SS L S G++IFG+V + LV++DL E L +
Sbjct: 277 LLNLTP---LEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGW 326
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 274 SPLQASFYY-LPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDLVK 332
+P++ +YY + + + +GG L +D +E + I+DSGTTL L FD V
Sbjct: 189 TPIKEEWYYQIEILKLEIGGQSLNLDC-----REYNADKAIVDSGTTLLRLPQKVFDAVV 243
Query: 333 KEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGAD------VDLPPENY 386
+ + + TG + S + PK+ + + + + + P+ Y
Sbjct: 244 EAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLY 303
Query: 387 M--IADSSMGLACLAMG--SSSGMSIFGNVQQQNMLVLYDLAKETLSFIPTQCDKL 438
+ + + + C G S+ + G + V++D A++ + F + C ++
Sbjct: 304 IQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 28/180 (15%)
Query: 52 RVLHGMKRGQHRLQRFNAMSLAASDTASDLKSSVHAGTGEYLMDLSIGSPAVSFSAILDT 111
RV G+ G+ + A L S+ D+ + + +Y ++ +G+P F+ I DT
Sbjct: 15 RVATGLSGGEEQPLLSGANPLR-SEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDT 73
Query: 112 GSDLIWTQCKPCQ---VCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEY 168
GS +W C C+ + + SS+Y K N
Sbjct: 74 GSSNLWVPSAKCYFSIACYLHSR--YKAGASSTYKK-------------------NGKPA 112
Query: 169 IYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSL 226
YG T S G + +++T GD+ V + F + G F ++ G++GLG +S+
Sbjct: 113 AIQYG-TGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISV 171
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPC---QVCFDQATPIFDPKESSSYSK 144
EY + +SIG+P F + DTGS W K C + C + FDP SS++ +
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKE 73
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 73 AASDTASDLKSSVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPC---QVCFDQ 129
AA+D + D EY + +SIG+P F + DTGS W K C + C
Sbjct: 1 AAADGSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCV-- 58
Query: 130 ATPIFDPKESSSY 142
+ FDP SS++
Sbjct: 59 GSRFFDPSASSTF 71
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 124/356 (34%), Gaps = 78/356 (21%)
Query: 98 IGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQ 157
IG+ F I DTGS +W C ++D S SY K
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEK------------- 68
Query: 158 QECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFSQGA--- 214
+ + SYG + + +G + + ++ GD+S+P ++ + G+
Sbjct: 69 ------DGTKVEISYG-SGTVRGYFSKDVISLGDLSLPYKFIEVTDADDLEPIYSGSEFD 121
Query: 215 GLVGLGRGPLSL------VSQLKEPK------FSYCLTSIDAAKTSTLLMGXXXXXXXXX 262
G++GLG LS+ V +LK+ F++ L D + G
Sbjct: 122 GILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDKHVGYLTIGGIES------ 175
Query: 263 XDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTY 322
PL L Y+ L I + +Q+ ++DSGT+
Sbjct: 176 --DFYEGPLTYEKLNHDLYW---------QIDLDIHFGKYVMQK---ANAVVDSGTS--- 218
Query: 323 LIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGST---DVEVPKLVFHFKGADV 379
I + + K F D + V F LP T + ++P L FH +
Sbjct: 219 TITAPTSFLNKFF-----------RDMNVIKVPF-LPLYVTTCDNDDLPTLEFHSRNNKY 266
Query: 380 DLPPENYMIADSSMG-----LACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSF 430
L PE YM S + L L + I G+ + ++D KE++ F
Sbjct: 267 TLEPEFYMDPLSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGF 322
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 77/374 (20%), Positives = 133/374 (35%), Gaps = 84/374 (22%)
Query: 80 DLKSSVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKES 139
D+ + + G GE +G F I DTGS +W K C ++D +S
Sbjct: 58 DVANIMFYGEGE------VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKS 111
Query: 140 SSYSKIPCSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGF 199
SY K + + +YG + + +G + + +T G +S+P
Sbjct: 112 KSYEK-------------------DGTKVDITYG-SGTVKGFFSKDLVTLGHLSMPYKFI 151
Query: 200 GCGSDNEGDGFSQGA---GLVGLGRGPLS------LVSQLKEPK------FSYCLTSIDA 244
++ + G++GLG LS +V +LK F++ L D
Sbjct: 152 EVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDV 211
Query: 245 AKTSTLLMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFAL 304
+ G ++ + L Y+ ++ +D +F
Sbjct: 212 HAGYLTIGG--------IEEKFYEGNITYEKLNHDLYW-----------QIDLDV-HFGK 251
Query: 305 QEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGST- 363
Q +I+DSGTT I + + + K F A+ + V F LP T
Sbjct: 252 QTMEKANVIVDSGTT---TITAPSEFLNKFF-----------ANLNVIKVPF-LPFYVTT 296
Query: 364 --DVEVPKLVFHFKGADVDLPPENYM-----IADSSMGLACLAMGSSSGMSIFGNVQQQN 416
+ E+P L F L PE YM + D+ + L + S I G+ +
Sbjct: 297 CDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRK 356
Query: 417 MLVLYDLAKETLSF 430
++D KE++ F
Sbjct: 357 YFTVFDYDKESVGF 370
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPC 123
+Y ++ IG+P +F I DTGS +W C
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKC 48
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPI---FDPKESSSYSK 144
+Y ++ IG+P F+ + DTGS +W C++ D A I ++ +SS+Y K
Sbjct: 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKL-LDIACWIHHKYNSDKSSTYVK 69
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 84/374 (22%)
Query: 80 DLKSSVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKES 139
D+ + + G GE +G F I DTGS +W K C ++D +S
Sbjct: 12 DVANIMFYGEGE------VGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKS 65
Query: 140 SSYSKIPCSSALCKALPQQECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGF 199
SY K + + +YG + + +G + + +T G +S+P
Sbjct: 66 KSYEK-------------------DGTKVDITYG-SGTVKGFFSKDLVTLGHLSMPYKFI 105
Query: 200 GC-GSDNEGDGFS--QGAGLVGLGRGPLS------LVSQLKEPK------FSYCLTSIDA 244
+D+ +S + G++GLG LS +V +LK F++ L D
Sbjct: 106 EVIDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDV 165
Query: 245 AKTSTLLMGXXXXXXXXXXDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFAL 304
+ G ++ + L Y+ ++ +D +F
Sbjct: 166 HAGYLTIGG--------IEEKFYEGNITYEKLNHDLYW-----------QIDLDV-HFGK 205
Query: 305 QEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGST- 363
Q +I+DSGTT I + + + K F A+ + V F LP T
Sbjct: 206 QTMEKANVIVDSGTT---TITAPSEFLNKFF-----------ANLNVIKVPF-LPFYVTT 250
Query: 364 --DVEVPKLVFHFKGADVDLPPENYM-----IADSSMGLACLAMGSSSGMSIFGNVQQQN 416
+ E+P L F L PE YM + D+ + L + S I G+ +
Sbjct: 251 CDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRK 310
Query: 417 MLVLYDLAKETLSF 430
++D KE++ F
Sbjct: 311 YFTVFDYDKESVGF 324
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
Y + IG F+ I DTGS +W C + ++D +S +Y K
Sbjct: 23 YYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEK 75
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 80 DLKSSVHAGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKES 139
D+ + + G GE +G F I DTGS +W K C ++D +S
Sbjct: 10 DVANLMFYGEGE------VGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSSKS 63
Query: 140 SSYSK 144
SY K
Sbjct: 64 KSYEK 68
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 313 IIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDA-ADQTGLDVCFKLPSGSTDVEVPKLV 371
I D+GTTL L DS V ++ SQ + D+ A D LP S V +
Sbjct: 211 IADTGTTLLLLDDS----VVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFS--VSISGYT 264
Query: 372 FHFKGADVDLPPENYMIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSFI 431
G+ ++ P D S L + S G SIFG++ ++ V++D L F
Sbjct: 265 ATVPGSLINYGPS----GDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA 320
Query: 432 P 432
P
Sbjct: 321 P 321
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 49 TFERVLHGMKRGQHRLQRFNAMSLAASDTASDLKSSVHAGTGEY 92
T E+++HG K + +Q ++ +SL + A D ++ A TGE+
Sbjct: 475 TIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEW 518
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 49 TFERVLHGMKRGQHRLQRFNAMSLAASDTASDLKSSVHAGTGEY 92
T E+++HG K + +Q ++ +SL + A D ++ A TGE+
Sbjct: 474 TIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEW 517
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 49 TFERVLHGMKRGQHRLQRFNAMSLAASDTASDLKSSVHAGTGEY 92
T E+++HG K + +Q ++ +SL + A D ++ A TGE+
Sbjct: 475 TIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEW 518
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 49 TFERVLHGMKRGQHRLQRFNAMSLAASDTASDLKSSVHAGTGEY 92
T E+++HG K + +Q ++ +SL + A D ++ A TGE+
Sbjct: 475 TIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEW 518
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 95 DLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
D +G F+ ILDTGS +W C ++D +S +Y K
Sbjct: 70 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 119
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 95 DLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
D +G F+ ILDTGS +W C ++D +S +Y K
Sbjct: 143 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 192
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 95 DLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
D +G F+ ILDTGS +W C ++D +S +Y K
Sbjct: 21 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 70
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 95 DLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
D +G F+ ILDTGS +W C ++D +S +Y K
Sbjct: 21 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 70
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 95 DLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
D +G F+ ILDTGS +W C ++D +S +Y K
Sbjct: 19 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 68
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 95 DLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSK 144
D +G F+ ILDTGS +W C ++D +S +Y K
Sbjct: 19 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,649,006
Number of Sequences: 62578
Number of extensions: 479738
Number of successful extensions: 1275
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 86
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)